Citrus Sinensis ID: 048358
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 541 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SIL5 | 534 | Pentatricopeptide repeat- | yes | no | 0.957 | 0.970 | 0.625 | 0.0 | |
| Q9FG16 | 622 | Pentatricopeptide repeat- | no | no | 0.898 | 0.781 | 0.387 | 1e-113 | |
| Q9FMA1 | 530 | Pentatricopeptide repeat- | no | no | 0.959 | 0.979 | 0.407 | 1e-113 | |
| Q9FIF7 | 544 | Putative pentatricopeptid | no | no | 0.942 | 0.937 | 0.385 | 1e-110 | |
| Q9LSB8 | 687 | Putative pentatricopeptid | no | no | 0.927 | 0.730 | 0.388 | 1e-110 | |
| Q9FI80 | 646 | Pentatricopeptide repeat- | no | no | 0.916 | 0.767 | 0.392 | 1e-107 | |
| Q9FJY7 | 620 | Pentatricopeptide repeat- | no | no | 0.903 | 0.788 | 0.388 | 1e-106 | |
| P0C899 | 686 | Putative pentatricopeptid | no | no | 0.918 | 0.724 | 0.359 | 1e-104 | |
| Q9SJG6 | 559 | Pentatricopeptide repeat- | no | no | 0.914 | 0.885 | 0.388 | 1e-104 | |
| Q9SIT7 | 697 | Pentatricopeptide repeat- | no | no | 0.953 | 0.740 | 0.372 | 1e-103 |
| >sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/524 (62%), Positives = 417/524 (79%), Gaps = 6/524 (1%)
Query: 9 SIKELEDRFVPILQSCENLIELKKIHTQILKYLLSQSNFLVTKMIDVCNSGGDLAYASLL 68
I+E+E+ F+P LQ ++ E KKI+ I+ + LSQS+F+VTKM+D C+ D+ YA+ L
Sbjct: 5 GIREVENYFIPFLQRVKSRNEWKKINASIIIHGLSQSSFMVTKMVDFCDKIEDMDYATRL 64
Query: 69 FKQVKEPNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCA 128
F QV PNVFLYN++IRAYT+N LY I +YKQ+LR S LPD+FT PF+ KSCA
Sbjct: 65 FNQVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRK----SFELPDRFTFPFMFKSCA 120
Query: 129 GLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNN 188
L LGKQ+H H+CKFG + H +TENAL+D+Y K D+L++AHKVF+EM +RD+++WN+
Sbjct: 121 SLGSCYLGKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNS 180
Query: 189 LISGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPD 248
L+SGYARLGQMKKA+ LF M TIVSWTAMISGYT IG Y EA+D FR+MQ+ GIEPD
Sbjct: 181 LLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPD 240
Query: 249 EISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFD 308
EIS++SVLP+CAQLGSLELG+WIH+Y ++ L++T +CNALIEMY KCG I+QA QLF
Sbjct: 241 EISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFG 300
Query: 309 QMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNE 368
QM +DV+SWST+I G A HG AH AI F+EMQR KV PN ITF+GLLSAC+H G W E
Sbjct: 301 QMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQE 360
Query: 369 GLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKPDAKIWGSLLSSC 428
GL YFD M++D+ IE KIEHYGCL+D+L RAG+L++A+ I + MPMKPD+KIWGSLLSSC
Sbjct: 361 GLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMKPDSKIWGSLLSSC 420
Query: 429 RTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPG 488
RT NL++A++AM+HL+ LEPED GNYVLL+NIYA G+WEDVSR+RK+IR+++MKKTPG
Sbjct: 421 RTPGNLDVALVAMDHLVELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIRNENMKKTPG 480
Query: 489 CSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVI 532
SLIEVNN VQEFVSGD++KPF +I +L+L HQD +DVI
Sbjct: 481 GSLIEVNNIVQEFVSGDNSKPFWTEISIVLQLFTSHQD--QDVI 522
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 409 bits (1051), Expect = e-113, Method: Compositional matrix adjust.
Identities = 193/498 (38%), Positives = 316/498 (63%), Gaps = 12/498 (2%)
Query: 18 VPILQSCENLIELKKIHTQILKYLLSQSNFLVTKMIDVCNSGGD-------LAYASLLFK 70
+ +LQSC + +LK IH +L+ L F+ ++++ +C L YA +F
Sbjct: 16 LALLQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYGIFS 75
Query: 71 QVKEPNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGL 130
Q++ PN+F++N +IR ++ A Y QML+ S I PD T PF+IK+ + +
Sbjct: 76 QIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLK-----SRIWPDNITFPFLIKASSEM 130
Query: 131 LCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLI 190
C +G+Q H+ + +FG ++ EN+L+ +Y C + A ++F +M RD+V+W +++
Sbjct: 131 ECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMV 190
Query: 191 SGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEI 250
+GY + G ++ AR +FD+MP+ + +W+ MI+GY + +A+D+F M+ G+ +E
Sbjct: 191 AGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANET 250
Query: 251 SIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQM 310
+VSV+ +CA LG+LE GE + Y K+H+ ++ AL++M+ +CG I +A +F+ +
Sbjct: 251 VMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGL 310
Query: 311 VERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGL 370
E D +SWS++I GLA HG AHKA+H F +M L P D+TF +LSAC+H G +GL
Sbjct: 311 PETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGL 370
Query: 371 MYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKPDAKIWGSLLSSCRT 430
+++MK+DH IE ++EHYGC+VD+LGRAG+L +A N I +M +KP+A I G+LL +C+
Sbjct: 371 EIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKI 430
Query: 431 YSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCS 490
Y N E+A L+ ++PE +G YVLLSNIYA G+W+ + +R +++ K +KK PG S
Sbjct: 431 YKNTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWS 490
Query: 491 LIEVNNEVQEFVSGDDTK 508
LIE++ ++ +F GDD K
Sbjct: 491 LIEIDGKINKFTMGDDQK 508
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protein At5g56310 OS=Arabidopsis thaliana GN=PCMP-E13 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 408 bits (1049), Expect = e-113, Method: Compositional matrix adjust.
Identities = 216/530 (40%), Positives = 325/530 (61%), Gaps = 11/530 (2%)
Query: 1 MAARIGALSIKELEDRFVPILQ-SCENLIELKKIHTQILKYLLSQSNFLVTKMIDVCNSG 59
M RI ALS+ + FV L+ NL LK+ H ++ L++ N V K I+ C++
Sbjct: 1 MIQRINALSLSSGLNWFVTSLKIHGNNLKTLKQSHCYMIITGLNRDNLNVAKFIEACSNA 60
Query: 60 GDLAYASLLFKQVKEPNVFLYNAMIRAYT---NNHLYGLAINLYKQMLRDPRTGSLILPD 116
G L YA +F PN +L+N MIRA + + + +AI +Y+++ PD
Sbjct: 61 GHLRYAYSVFTHQPCPNTYLHNTMIRALSLLDEPNAHSIAITVYRKLW-----ALCAKPD 115
Query: 117 KFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFE 176
FT PFV+K + G+QIH V FG S L+ +Y C L +A K+F+
Sbjct: 116 TFTFPFVLKIAVRVSDVWFGRQIHGQVVVFGFDSSVHVVTGLIQMYFSCGGLGDARKMFD 175
Query: 177 EMTDRDIVAWNNLISGYARLGQMKKARMLFDKMP--YTTIVSWTAMISGYTHIGSYAEAL 234
EM +D+ WN L++GY ++G+M +AR L + MP VSWT +ISGY G +EA+
Sbjct: 176 EMLVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASEAI 235
Query: 235 DVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMY 294
+VF++M M +EPDE+++++VL ACA LGSLELGE I Y D + R + NA+I+MY
Sbjct: 236 EVFQRMLMENVEPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVIDMY 295
Query: 295 IKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFI 354
K G I +A +F+ + ER+VV+W+T+I GLA HG +A+ +F+ M + V PND+TFI
Sbjct: 296 AKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPNDVTFI 355
Query: 355 GLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPM 414
+LSAC+H G+ + G F+SM+ + I IEHYGC++DLLGRAG+L +A +I+ MP
Sbjct: 356 AILSACSHVGWVDLGKRLFNSMRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIKSMPF 415
Query: 415 KPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRM 474
K +A IWGSLL++ + +LE+ A+ L+ LEP ++GNY+LL+N+Y+ GRW++ M
Sbjct: 416 KANAAIWGSLLAASNVHHDLELGERALSELIKLEPNNSGNYMLLANLYSNLGRWDESRMM 475
Query: 475 RKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALH 524
R +++ +KK G S IEV N V +F+SGD T P ++ I +L+ + L
Sbjct: 476 RNMMKGIGVKKMAGESSIEVENRVYKFISGDLTHPQVERIHEILQEMDLQ 525
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIF7|PP435_ARATH Putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E41 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 400 bits (1029), Expect = e-110, Method: Compositional matrix adjust.
Identities = 200/519 (38%), Positives = 318/519 (61%), Gaps = 9/519 (1%)
Query: 17 FVPILQSCENLIELKKIHTQILKYLLSQSNFLVTKMIDVCNSGGDLAYASLLFKQVKEPN 76
+ +L+SC+N+ + IH +I++ Q F+V ++I VC++ + YA +F V PN
Sbjct: 32 LISVLRSCKNIAHVPSIHAKIIRTFHDQDAFVVFELIRVCSTLDSVDYAYDVFSYVSNPN 91
Query: 77 VFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLG 136
V+LY AMI + ++ ++LY +M+ + +LPD + + V+K+C +C
Sbjct: 92 VYLYTAMIDGFVSSGRSADGVSLYHRMIHNS-----VLPDNYVITSVLKACDLKVC---- 142
Query: 137 KQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARL 196
++IHA V K G S ++++YGK EL+ A K+F+EM DRD VA +I+ Y+
Sbjct: 143 REIHAQVLKLGFGSSRSVGLKMMEIYGKSGELVNAKKMFDEMPDRDHVAATVMINCYSEC 202
Query: 197 GQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVL 256
G +K+A LF + V WTAMI G +AL++FR+MQM + +E + V VL
Sbjct: 203 GFIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQMENVSANEFTAVCVL 262
Query: 257 PACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERDVV 316
AC+ LG+LELG W+H + + + + NALI MY +CG IN+A ++F M ++DV+
Sbjct: 263 SACSDLGALELGRWVHSFVENQRMELSNFVGNALINMYSRCGDINEARRVFRVMRDKDVI 322
Query: 317 SWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSM 376
S++T+I GLA HG + +AI+ F +M PN +T + LL+AC+H G + GL F+SM
Sbjct: 323 SYNTMISGLAMHGASVEAINEFRDMVNRGFRPNQVTLVALLNACSHGGLLDIGLEVFNSM 382
Query: 377 KRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKPDAKIWGSLLSSCRTYSNLEI 436
KR ++E +IEHYGC+VDLLGR GRL++A IE +P++PD + G+LLS+C+ + N+E+
Sbjct: 383 KRVFNVEPQIEHYGCIVDLLGRVGRLEEAYRFIENIPIEPDHIMLGTLLSACKIHGNMEL 442
Query: 437 AVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNN 496
+ L E D+G YVLLSN+YA G+W++ + +R+ +R ++K PGCS IEV+N
Sbjct: 443 GEKIAKRLFESENPDSGTYVLLSNLYASSGKWKESTEIRESMRDSGIEKEPGCSTIEVDN 502
Query: 497 EVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIM 535
++ EF+ GD P + I+ L+ L ++ IDI+
Sbjct: 503 QIHEFLVGDIAHPHKEAIYQRLQELNRILRFKENQIDII 541
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 399 bits (1026), Expect = e-110, Method: Compositional matrix adjust.
Identities = 198/510 (38%), Positives = 314/510 (61%), Gaps = 8/510 (1%)
Query: 31 KKIHTQILKYLLSQSNFLVTKMIDVCNSGGDLAYASLLFKQVKEPNVFLYNAMIRAYTNN 90
KK+H ++K+ L + ++ ++ + + G + A +F + + +VF +N MI Y
Sbjct: 155 KKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRM 214
Query: 91 HLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKS 150
Y +I L +M R+ L+ P TL V+ +C+ + L K++H +V + +
Sbjct: 215 KEYEESIELLVEMERN-----LVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEP 269
Query: 151 HSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMP 210
ENAL++ Y C E+ A ++F M RD+++W +++ GY G +K AR FD+MP
Sbjct: 270 SLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMP 329
Query: 211 YTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEW 270
+SWT MI GY G + E+L++FR+MQ G+ PDE ++VSVL ACA LGSLE+GEW
Sbjct: 330 VRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEW 389
Query: 271 IHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGK 330
I Y DKN + V+ NALI+MY KCGC +A ++F M +RD +W+ ++ GLAN+G+
Sbjct: 390 IKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQ 449
Query: 331 AHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYG 390
+AI +F +MQ + + P+DIT++G+LSAC H+G ++ +F M+ DH IE + HYG
Sbjct: 450 GQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYG 509
Query: 391 CLVDLLGRAGRLDQALNIIEEMPMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPE 450
C+VD+LGRAG + +A I+ +MPM P++ +WG+LL + R +++ +A +A + +L LEP+
Sbjct: 510 CMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEPD 569
Query: 451 DTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPF 510
+ Y LL NIYA RW+D+ +R+ I ++KKTPG SLIEVN EFV+GD +
Sbjct: 570 NGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVAGDKSHLQ 629
Query: 511 LKDIFWLLELLALHQDRAK---DVIDIMYE 537
++I+ LE LA A D ++++E
Sbjct: 630 SEEIYMKLEELAQESTFAAYLPDTSELLFE 659
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 390 bits (1003), Expect = e-107, Method: Compositional matrix adjust.
Identities = 204/520 (39%), Positives = 309/520 (59%), Gaps = 24/520 (4%)
Query: 19 PILQSCENLIELKKIHTQILKYLLSQSNFLVTKMIDVCNSGG----DLAYASLLFKQVKE 74
P + +C + +L +IH +K + +++ C + DL YA +F Q+ +
Sbjct: 28 PQINNCRTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQ 87
Query: 75 PNVFLYNAMIRAYTNNHLYG--LAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLC 132
N F +N +IR ++ + +AI L+ +M+ D + P++FT P V+K+CA
Sbjct: 88 RNCFSWNTIIRGFSESDEDKALIAITLFYEMMSD----EFVEPNRFTFPSVLKACAKTGK 143
Query: 133 PSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEE---------MTDR-- 181
GKQIH K+G + L+ +Y C + +A +F + MTDR
Sbjct: 144 IQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRK 203
Query: 182 ---DIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFR 238
+IV WN +I GY RLG K ARMLFDKM ++VSW MISGY+ G + +A++VFR
Sbjct: 204 RDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFR 263
Query: 239 QMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCG 298
+M+ I P+ +++VSVLPA ++LGSLELGEW+H+Y + + + V+ +ALI+MY KCG
Sbjct: 264 EMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCG 323
Query: 299 CINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLS 358
I +A +F+++ +V++WS +I G A HG+A AI F +M++ V P+D+ +I LL+
Sbjct: 324 IIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLT 383
Query: 359 ACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKPDA 418
AC+H G EG YF M +E +IEHYGC+VDLLGR+G LD+A I MP+KPD
Sbjct: 384 ACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDD 443
Query: 419 KIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLI 478
IW +LL +CR N+E+ L+ + P D+G YV LSN+YA G W +VS MR +
Sbjct: 444 VIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRM 503
Query: 479 RSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLL 518
+ K ++K PGCSLI+++ + EFV DD+ P K+I +L
Sbjct: 504 KEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSML 543
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 387 bits (994), Expect = e-106, Method: Compositional matrix adjust.
Identities = 193/497 (38%), Positives = 299/497 (60%), Gaps = 8/497 (1%)
Query: 21 LQSCENLIELKKIHTQILKYLLSQSNFLVTKMIDVC---NSGGDLAYASLLFKQVKEPNV 77
LQ C ELK+IH ++LK L Q ++ +TK + C S L YA ++F P+
Sbjct: 21 LQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDT 80
Query: 78 FLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGK 137
FL+N MIR ++ + ++ LY++ML S + +T P ++K+C+ L
Sbjct: 81 FLWNLMIRGFSCSDEPERSLLLYQRML-----CSSAPHNAYTFPSLLKACSNLSAFEETT 135
Query: 138 QIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLG 197
QIHA + K G ++ N+L++ Y AH +F+ + + D V+WN++I GY + G
Sbjct: 136 QIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAG 195
Query: 198 QMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLP 257
+M A LF KM +SWT MISGY EAL +F +MQ +EPD +S+ + L
Sbjct: 196 KMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALS 255
Query: 258 ACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERDVVS 317
ACAQLG+LE G+WIH Y +K + +V+ LI+MY KCG + +A ++F + ++ V +
Sbjct: 256 ACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQA 315
Query: 318 WSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMK 377
W+ +I G A HG +AI F EMQ++ + PN ITF +L+AC++TG EG + F SM+
Sbjct: 316 WTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSME 375
Query: 378 RDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKPDAKIWGSLLSSCRTYSNLEIA 437
RD++++ IEHYGC+VDLLGRAG LD+A I+EMP+KP+A IWG+LL +CR + N+E+
Sbjct: 376 RDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELG 435
Query: 438 VIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNE 497
E L+ ++P G YV +NI+A +W+ + R+L++ + + K PGCS I +
Sbjct: 436 EEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGT 495
Query: 498 VQEFVSGDDTKPFLKDI 514
EF++GD + P ++ I
Sbjct: 496 THEFLAGDRSHPEIEKI 512
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142 OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 380 bits (975), Expect = e-104, Method: Compositional matrix adjust.
Identities = 194/539 (35%), Positives = 305/539 (56%), Gaps = 42/539 (7%)
Query: 20 ILQSCENLIELKKIHTQILKYLLSQSNFLVTKMIDVCNSGGDLAYASLLFKQVKEPNVFL 79
+L + ++ L+ +H++I+ L ++ L K++ S D+A A +F ++ E NV +
Sbjct: 48 VLDTYPDIRTLRTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVII 107
Query: 80 YNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQI 139
N MIR+Y NN YG + ++ M G + PD +T P V+K+C+ +G++I
Sbjct: 108 INVMIRSYVNNGFYGEGVKVFGTM-----CGCNVRPDHYTFPCVLKACSCSGTIVIGRKI 162
Query: 140 HAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQM 199
H K GL S N L+ +YGKC L EA V +EM+ RD+V+WN+L+ GYA+ +
Sbjct: 163 HGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRF 222
Query: 200 KKA-------------------------------------RMLFDKMPYTTIVSWTAMIS 222
A + +F KM ++VSW MI
Sbjct: 223 DDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIG 282
Query: 223 GYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLR 282
Y EA++++ +M+ G EPD +SI SVLPAC +L LG+ IH Y ++ L+
Sbjct: 283 VYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIP 342
Query: 283 RTVICNALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQ 342
++ NALI+MY KCGC+ +A +F+ M RDVVSW+ +I G+ A+ LF ++Q
Sbjct: 343 NLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQ 402
Query: 343 RLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRL 402
+ P+ I F+ L+AC+H G EG F M + I ++EH C+VDLLGRAG++
Sbjct: 403 DSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKV 462
Query: 403 DQALNIIEEMPMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIY 462
+A I++M M+P+ ++WG+LL +CR +S+ +I ++A + L L PE +G YVLLSNIY
Sbjct: 463 KEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIY 522
Query: 463 AKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELL 521
AK GRWE+V+ +R +++SK +KK PG S +EVN + F+ GD + P +I+ L++L
Sbjct: 523 AKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYRELDVL 581
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SJG6|PP200_ARATH Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E75 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 379 bits (973), Expect = e-104, Method: Compositional matrix adjust.
Identities = 194/499 (38%), Positives = 307/499 (61%), Gaps = 4/499 (0%)
Query: 24 CENLIELKKIHTQILKYLLSQSNFLVTKMIDVC-NSGGDLAYASLLFKQVKEPNVFLYNA 82
C + ELK+IH ++K L ++++ C S D+ YA L+F ++ N F++N
Sbjct: 35 CSTMRELKQIHASLIKTGLISDTVTASRVLAFCCASPSDMNYAYLVFTRINHKNPFVWNT 94
Query: 83 MIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAH 142
+IR ++ + +AI+++ ML + + P + T P V K+ L G+Q+H
Sbjct: 95 IIRGFSRSSFPEMAISIFIDMLCSSPS---VKPQRLTYPSVFKAYGRLGQARDGRQLHGM 151
Query: 143 VCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKA 202
V K GL+ S N +L +Y C LIEA ++F M D+VAWN++I G+A+ G + +A
Sbjct: 152 VIKEGLEDDSFIRNTMLHMYVTCGCLIEAWRIFLGMIGFDVVAWNSMIMGFAKCGLIDQA 211
Query: 203 RMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQL 262
+ LFD+MP VSW +MISG+ G + +ALD+FR+MQ ++PD ++VS+L ACA L
Sbjct: 212 QNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYL 271
Query: 263 GSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERDVVSWSTVI 322
G+ E G WIH Y +N +++ ALI+MY KCGCI + +F+ ++ + W+++I
Sbjct: 272 GASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCWNSMI 331
Query: 323 GGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHI 382
GLAN+G +A+ LF E++R + P+ ++FIG+L+ACAH+G + +F MK + I
Sbjct: 332 LGLANNGFEERAMDLFSELERSGLEPDSVSFIGVLTACAHSGEVHRADEFFRLMKEKYMI 391
Query: 383 EHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKPDAKIWGSLLSSCRTYSNLEIAVIAME 442
E I+HY +V++LG AG L++A +I+ MP++ D IW SLLS+CR N+E+A A +
Sbjct: 392 EPSIKHYTLMVNVLGGAGLLEEAEALIKNMPVEEDTVIWSSLLSACRKIGNVEMAKRAAK 451
Query: 443 HLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFV 502
L L+P++T YVLLSN YA +G +E+ R L++ + M+K GCS IEV+ EV EF+
Sbjct: 452 CLKKLDPDETCGYVLLSNAYASYGLFEEAVEQRLLMKERQMEKEVGCSSIEVDFEVHEFI 511
Query: 503 SGDDTKPFLKDIFWLLELL 521
S T P +I+ LL++L
Sbjct: 512 SCGGTHPKSAEIYSLLDIL 530
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 375 bits (963), Expect = e-103, Method: Compositional matrix adjust.
Identities = 198/531 (37%), Positives = 311/531 (58%), Gaps = 15/531 (2%)
Query: 14 EDRFVPILQSCENLIELKK---IHTQILKYLLSQSNFLVTKMIDVCNSGGDLAYASLLFK 70
E F +L +C L ++ K +H+ I K ++ + ++D+ + G++ A +F
Sbjct: 152 EYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFD 211
Query: 71 QVKEPNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGL 130
++ + NV +N++I + N A+++++ ML S + PD+ TL VI +CA L
Sbjct: 212 EMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLE-----SRVEPDEVTLASVISACASL 266
Query: 131 LCPSLGKQIHAHVCKFG-LKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNL 189
+G+++H V K L++ I NA +D+Y KC + EA +F+ M R+++A ++
Sbjct: 267 SAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSM 326
Query: 190 ISGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDE 249
ISGYA K AR++F KM +VSW A+I+GYT G EAL +F ++ + P
Sbjct: 327 ISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTH 386
Query: 250 ISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRT------VICNALIEMYIKCGCINQA 303
S ++L ACA L L LG H++ K+ ++ + N+LI+MY+KCGC+ +
Sbjct: 387 YSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEG 446
Query: 304 SQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHT 363
+F +M+ERD VSW+ +I G A +G ++A+ LF EM P+ IT IG+LSAC H
Sbjct: 447 YLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHA 506
Query: 364 GFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKPDAKIWGS 423
GF EG YF SM RD + +HY C+VDLLGRAG L++A ++IEEMPM+PD+ IWGS
Sbjct: 507 GFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGS 566
Query: 424 LLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSM 483
LL++C+ + N+ + E LL +EP ++G YVLLSN+YA+ G+WEDV +RK +R + +
Sbjct: 567 LLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGV 626
Query: 484 KKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDI 534
K PGCS I++ F+ D + P K I LL++L +D +I
Sbjct: 627 TKQPGCSWIKIQGHDHVFMVKDKSHPRKKQIHSLLDILIAEMRPEQDHTEI 677
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 541 | ||||||
| 224141809 | 547 | predicted protein [Populus trichocarpa] | 1.0 | 0.989 | 0.705 | 0.0 | |
| 359476084 | 541 | PREDICTED: pentatricopeptide repeat-cont | 0.996 | 0.996 | 0.672 | 0.0 | |
| 255551084 | 517 | pentatricopeptide repeat-containing prot | 0.946 | 0.990 | 0.691 | 0.0 | |
| 225430143 | 537 | PREDICTED: pentatricopeptide repeat-cont | 0.990 | 0.998 | 0.658 | 0.0 | |
| 356518302 | 535 | PREDICTED: pentatricopeptide repeat-cont | 0.977 | 0.988 | 0.629 | 0.0 | |
| 357466605 | 568 | Pentatricopeptide repeat-containing prot | 0.983 | 0.936 | 0.616 | 0.0 | |
| 15225375 | 534 | mitochondrial editing factor 21 [Arabido | 0.957 | 0.970 | 0.625 | 0.0 | |
| 296081956 | 553 | unnamed protein product [Vitis vinifera] | 0.927 | 0.907 | 0.622 | 0.0 | |
| 297832654 | 534 | pentatricopeptide repeat-containing prot | 0.955 | 0.968 | 0.613 | 0.0 | |
| 359476090 | 515 | PREDICTED: LOW QUALITY PROTEIN: pentatri | 0.948 | 0.996 | 0.620 | 0.0 |
| >gi|224141809|ref|XP_002324255.1| predicted protein [Populus trichocarpa] gi|222865689|gb|EEF02820.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 818 bits (2114), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/544 (70%), Positives = 463/544 (85%), Gaps = 3/544 (0%)
Query: 1 MAARIGALSIKELEDRFVPILQSCENLIELKKIHTQILKYLLSQSNFLVTKMIDVCNSGG 60
MA RIGAL I+ELE+ FVPILQ+C+N++ELK IH ++KY LSQS+FLVTKM+DVC+
Sbjct: 1 MATRIGALKIRELENFFVPILQNCKNIVELKSIHAHVIKYSLSQSSFLVTKMVDVCDKTE 60
Query: 61 DLAYASLLFKQVKEPNVFLYNAMIRAYTNNHLYGLAINLYKQMLR--DPRTGSLILPDKF 118
DL YASLLFKQVKEPN +LYNAMIRA+T+N +Y LAI YK+MLR DP + + I PD+F
Sbjct: 61 DLGYASLLFKQVKEPNGYLYNAMIRAHTHNKVYALAILFYKEMLRLKDPESENPIFPDRF 120
Query: 119 TLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEM 178
T PFVIKSC+GL+C +LGKQ+HAH+CKFG KS+ ENAL+D+Y KC L++AHKVF+ M
Sbjct: 121 TFPFVIKSCSGLVCYNLGKQVHAHLCKFGPKSNITMENALIDMYTKCASLLDAHKVFDGM 180
Query: 179 TDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFR 238
+RD ++WN++ISG+ +GQM+KA LFD MPY TIVSWTAMISGYT +GSYA+AL VFR
Sbjct: 181 VERDAISWNSIISGHVGVGQMRKAGALFDLMPYRTIVSWTAMISGYTRLGSYADALYVFR 240
Query: 239 QMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCG 298
QMQ+VG+EPDEISI+SVLPACAQLG+LE+G+WIHMYCD+N LLR+T ICNAL+EMY KCG
Sbjct: 241 QMQIVGVEPDEISIISVLPACAQLGALEVGKWIHMYCDRNGLLRKTSICNALMEMYSKCG 300
Query: 299 CINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLS 358
CI QA QLFDQM + DV+SWST+IGGLANHGKA +AI LF M++ K+ PN ITF+GLLS
Sbjct: 301 CIGQAYQLFDQMSKGDVISWSTMIGGLANHGKAREAIELFKRMKKAKIEPNGITFLGLLS 360
Query: 359 ACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKPDA 418
ACAH GFWNEGL YFDSM +D+HIE ++EHYGCLVD+LGRAGRL QAL++IE+MPMKPD+
Sbjct: 361 ACAHAGFWNEGLAYFDSMSKDYHIEPEVEHYGCLVDILGRAGRLSQALDVIEKMPMKPDS 420
Query: 419 KIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLI 478
KIWGSLLSSCRT+SNL+IA+IAMEHL LEP+DTGNYVLLSNIYA +W+ VSRMRKLI
Sbjct: 421 KIWGSLLSSCRTHSNLDIAIIAMEHLEELEPDDTGNYVLLSNIYADLAKWDGVSRMRKLI 480
Query: 479 RSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKD-VIDIMYE 537
+SKSMKKTPG SLI++NN VQEFVS DD+KPF +DIFWLLELL HQD +I+IM E
Sbjct: 481 KSKSMKKTPGSSLIDINNVVQEFVSWDDSKPFSRDIFWLLELLTSHQDTTDPHLIEIMLE 540
Query: 538 DIGE 541
D E
Sbjct: 541 DGSE 544
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein At2g20540-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 771 bits (1991), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/540 (67%), Positives = 445/540 (82%), Gaps = 1/540 (0%)
Query: 1 MAARIGALSIKELEDRFVPILQSCENLIELKKIHTQILKYLLSQSNFLVTKMIDVCNSGG 60
MA ++ AL I+E+ED FVPIL++C N++ELKKIH I+K+ LSQS+FLVTKM+DVCN
Sbjct: 1 MARKLRALKIREMEDIFVPILKNCPNIVELKKIHAHIVKFSLSQSSFLVTKMVDVCNHHA 60
Query: 61 DLAYASLLFKQVKEPNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTL 120
+ YA+LLFK+V +PN FLYNAMIRAY +N +Y LAI +YKQML + I PDKFT
Sbjct: 61 ETEYANLLFKRVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGHSHGENPIFPDKFTF 120
Query: 121 PFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTD 180
PFV+KSCAGL+C LGKQ+H HV KFG KS+++ EN+L+++Y KCD L +AHKVFEEMT+
Sbjct: 121 PFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHKVFEEMTE 180
Query: 181 RDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQM 240
RD V+WN LISG+ RLGQM++AR +F++M TI SWTA++SGY IG YA+AL+ FR+M
Sbjct: 181 RDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRM 240
Query: 241 QMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCI 300
QMVGIEPDEIS+VSVLPACAQLG+LELG+WIH Y DK LR +CNALIEMY KCG I
Sbjct: 241 QMVGIEPDEISLVSVLPACAQLGALELGKWIHFYADKAGFLRNICVCNALIEMYAKCGSI 300
Query: 301 NQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSAC 360
++ +LFDQM ERDV+SWST+I GLANHG+AH+AI LF EMQ+ K+ PN ITF+GLLSAC
Sbjct: 301 DEGRRLFDQMNERDVISWSTMIVGLANHGRAHEAIELFQEMQKAKIEPNIITFVGLLSAC 360
Query: 361 AHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKPDAKI 420
AH G NEGL YF+SMKRD++IE +EHYGCLV+LLG +GRLDQAL +I++MPMKPD+ I
Sbjct: 361 AHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELIKKMPMKPDSAI 420
Query: 421 WGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRS 480
WGSLLSSCR++SNLEIAVIAMEHLL LEP DTGNYVLLSN+YA G+W+ VSRMRKL+RS
Sbjct: 421 WGSLLSSCRSHSNLEIAVIAMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRS 480
Query: 481 KSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRA-KDVIDIMYEDI 539
KSMKKTPGCS IEV+N VQEF SGDD+KPF K I+ +L+LL +HQ R D+I+IM DI
Sbjct: 481 KSMKKTPGCSSIEVDNMVQEFASGDDSKPFSKAIYRVLKLLVMHQRRMDDDIIEIMVHDI 540
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255551084|ref|XP_002516590.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223544410|gb|EEF45931.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 764 bits (1972), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/516 (69%), Positives = 429/516 (83%), Gaps = 4/516 (0%)
Query: 27 LIELKKIHTQILKYLLSQSNFLVTKMIDVCNSGGDLAYASLLFKQVKEPNVFLYNAMIRA 86
+ ELKK H ++KY LSQSNFLVTKMIDVC+ D+ YAS LFK+V +PN +LYNAMIRA
Sbjct: 1 MAELKKNHALVIKYALSQSNFLVTKMIDVCDRNEDMDYASFLFKEVIDPNAYLYNAMIRA 60
Query: 87 YTNNHLYGLAINLYKQMLRDPRTGS----LILPDKFTLPFVIKSCAGLLCPSLGKQIHAH 142
T+N +Y L I+ YKQMLR+ R LILPD+FT PFV+K+CA L +LGKQ+HA
Sbjct: 61 CTHNSMYSLTIDFYKQMLREYRNSQTSEDLILPDEFTFPFVVKACARLGLHNLGKQVHAQ 120
Query: 143 VCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKA 202
KFG KSH ITENAL+D+Y KCD L++AH +F+EM +R ++WN +ISG+ RLGQM++A
Sbjct: 121 FFKFGKKSHLITENALIDMYTKCDNLLDAHNLFDEMHERGAISWNGIISGHVRLGQMRRA 180
Query: 203 RMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQL 262
R LFD+MP TIVSWTA+ISGYT IGSY +ALDVFR+MQ+ GIEPDE SI+SVLPACA+L
Sbjct: 181 RALFDEMPNRTIVSWTAIISGYTRIGSYIDALDVFREMQIAGIEPDEASIISVLPACAKL 240
Query: 263 GSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERDVVSWSTVI 322
G+LE G+WIHM+C +N LLRRT ICNALIEMY KCGCI+QA QLFDQM RDV+SWST+I
Sbjct: 241 GALETGKWIHMFCARNGLLRRTCICNALIEMYTKCGCIDQACQLFDQMRGRDVISWSTMI 300
Query: 323 GGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHI 382
GGLANHGK +AI +F M++ + PN ITF+GLLSACAH GFW EGLMYFD+MK+D HI
Sbjct: 301 GGLANHGKVREAIAIFERMKQTNIKPNGITFVGLLSACAHAGFWEEGLMYFDTMKKDFHI 360
Query: 383 EHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKPDAKIWGSLLSSCRTYSNLEIAVIAME 442
E +IEHYG LVDLLGRAGRL QAL+I+E+MPMKPD+KIWGSLLSSCRT+ N+E+AVIAME
Sbjct: 361 EPEIEHYGSLVDLLGRAGRLSQALDIVEKMPMKPDSKIWGSLLSSCRTHCNIEVAVIAME 420
Query: 443 HLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFV 502
HL LEP+DTGNYVLLSNIYA G+W+DVSRMRKL+RSK MKKTPGCSLIEVNN QEFV
Sbjct: 421 HLEELEPDDTGNYVLLSNIYADLGKWDDVSRMRKLVRSKRMKKTPGCSLIEVNNVAQEFV 480
Query: 503 SGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMYED 538
SGDD+KP+ K+IFWLLELLA HQD K +++I+ E+
Sbjct: 481 SGDDSKPYSKEIFWLLELLAFHQDMDKHILEIIPEN 516
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 757 bits (1955), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/539 (65%), Positives = 441/539 (81%), Gaps = 3/539 (0%)
Query: 1 MAARIGALSIKELEDRFVPILQSCENLIELKKIHTQILKYLLSQSNFLVTKMIDVCNSGG 60
MA ++ AL I+E+ED FVPIL+ C N++ELKKIH I+K+ LSQS+FLVTKM+DVCN G
Sbjct: 1 MARKLRALKIREMEDMFVPILKDCPNIVELKKIHAHIVKFSLSQSSFLVTKMVDVCNHYG 60
Query: 61 DLAYASLLFKQVKEPNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTL 120
+ YA+LLFK V +PN FLYNAMIRAY +N +Y LAI +YKQML +P + I PDKFT
Sbjct: 61 ETEYANLLFKGVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTF 120
Query: 121 PFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTD 180
PFV+KSCAGL+C LGKQ+H HV KFG KS+++ EN+L+++Y KCD L +AH+VFEEMT+
Sbjct: 121 PFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTE 180
Query: 181 RDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQM 240
RD V+WN LISG+ RLGQM++AR +F++M TI SWTA++SGY IG YA+AL+ FR+M
Sbjct: 181 RDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRM 240
Query: 241 QMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCI 300
QMVGIEPDEIS+VSVLP CAQLG+LELG+WIH+Y DK LR +CNALIEMY KCG I
Sbjct: 241 QMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSI 300
Query: 301 NQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSAC 360
+Q +LFDQM ERDV+SWST+I GLANHG+A +AI LF EMQ+ K+ P+ ITF+GLL+AC
Sbjct: 301 DQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTAC 360
Query: 361 AHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKPDAKI 420
AH G NEGL YF+SMKRD++IE +EHYGCLV+LLG +GRLDQAL ++++MP KPD+ I
Sbjct: 361 AHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELVKKMPRKPDSPI 420
Query: 421 WGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRS 480
WGSLLSSCR++ NL+IAVIAMEHLL LEP DTGNYVLLSN+YA G+W+ VSRMRKL+RS
Sbjct: 421 WGSLLSSCRSHGNLKIAVIAMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRS 480
Query: 481 KSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMYEDI 539
KSMKKTPGCS IEV+N VQEF SGDD+KPF K I +L+LL +HQ + +I+IM DI
Sbjct: 481 KSMKKTPGCSSIEVDNMVQEFASGDDSKPFSKAICRVLKLLVMHQSK---IIEIMVHDI 536
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356518302|ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/534 (62%), Positives = 436/534 (81%), Gaps = 5/534 (0%)
Query: 8 LSIKELEDRFVPILQSCENLIELKKIHTQILKYLLSQSNFLVTKMIDVCNSGGDLAYASL 67
+ ++ELE+RFV L++C + ELKKIH I+K LSQSNFLVTKM+D+C++ + YA++
Sbjct: 1 MGVRELENRFVTTLRNCPKIAELKKIHAHIVKLSLSQSNFLVTKMLDLCDNLSHVDYATM 60
Query: 68 LFKQVKEPNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSC 127
+F+Q++ PNVF YNA+IR YT+NH + LAI ++ QML T PDKFT PFVIKSC
Sbjct: 61 IFQQLENPNVFSYNAIIRTYTHNHKHPLAITVFNQML----TTKSASPDKFTFPFVIKSC 116
Query: 128 AGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWN 187
AGLLC LG+Q+HAHVCKFG K+H+ITENAL+D+Y KC ++ A++V+EEMT+RD V+WN
Sbjct: 117 AGLLCRRLGQQVHAHVCKFGPKTHAITENALIDMYTKCGDMSGAYQVYEEMTERDAVSWN 176
Query: 188 NLISGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEP 247
+LISG+ RLGQMK AR +FD+MP TIVSWT MI+GY G YA+AL +FR+MQ+VGIEP
Sbjct: 177 SLISGHVRLGQMKSAREVFDEMPCRTIVSWTTMINGYARGGCYADALGIFREMQVVGIEP 236
Query: 248 DEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLF 307
DEIS++SVLPACAQLG+LE+G+WIH Y +K+ L+ + NAL+EMY KCGCI++A LF
Sbjct: 237 DEISVISVLPACAQLGALEVGKWIHKYSEKSGFLKNAGVFNALVEMYAKCGCIDEAWGLF 296
Query: 308 DQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWN 367
+QM+E+DV+SWST+IGGLANHGK + AI +F +MQ+ V PN +TF+G+LSACAH G WN
Sbjct: 297 NQMIEKDVISWSTMIGGLANHGKGYAAIRVFEDMQKAGVTPNGVTFVGVLSACAHAGLWN 356
Query: 368 EGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKPDAKIWGSLLSS 427
EGL YFD M+ D+H+E +IEHYGCLVDLLGR+G+++QAL+ I +MPM+PD++ W SLLSS
Sbjct: 357 EGLRYFDVMRVDYHLEPQIEHYGCLVDLLGRSGQVEQALDTILKMPMQPDSRTWNSLLSS 416
Query: 428 CRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTP 487
CR + NLEIAV+AME LL LEPE++GNYVLL+NIYAK +WE VS +RKLIRSK +KKTP
Sbjct: 417 CRIHHNLEIAVVAMEQLLKLEPEESGNYVLLANIYAKLDKWEGVSNVRKLIRSKRIKKTP 476
Query: 488 GCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMYEDIGE 541
GCSLIEVNN VQEFVSGDD+KPF +++FW+L+ L LHQ R KD I+ + ED G+
Sbjct: 477 GCSLIEVNNLVQEFVSGDDSKPFSQEVFWILKGLTLHQIRTKDFIEFV-EDAGQ 529
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357466605|ref|XP_003603587.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355492635|gb|AES73838.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 711 bits (1836), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/534 (61%), Positives = 428/534 (80%), Gaps = 2/534 (0%)
Query: 5 IGALSIKELEDRFVPILQSCENLIELKKIHTQILKYLLSQSNFLVTKMIDVCNSGGDLAY 64
+ + I+ELE+R++ L++C + +LKKIH ++K LSQSNFLVTKM+D C++ G ++Y
Sbjct: 1 MATIFIRELENRYITSLKNCFKITQLKKIHAHVVKLSLSQSNFLVTKMLDSCDNLGHVSY 60
Query: 65 ASLLFKQVKEPNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVI 124
A+LLFKQ+ PN+F YNA+IR Y +N + AI+++ QML + + + PDKFT PFVI
Sbjct: 61 ATLLFKQLLHPNIFTYNAIIRTYAHNRHHSSAISVFVQML--THSTNSVFPDKFTFPFVI 118
Query: 125 KSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIV 184
KSC G+LC LG Q+H V KFG H ITENAL+D+Y K +L A KVFEEM+ RD++
Sbjct: 119 KSCTGILCHRLGMQVHGLVYKFGADFHCITENALIDMYTKFGDLTNACKVFEEMSHRDVI 178
Query: 185 AWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVG 244
+WN+LI GY +LGQM AR LFD MP TIVSWT MI+GY +G Y +ALDVFR+MQMVG
Sbjct: 179 SWNSLIFGYVKLGQMNSARELFDDMPVRTIVSWTTMITGYGRMGCYGDALDVFREMQMVG 238
Query: 245 IEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQAS 304
IEPDEISI++VLPACAQLG+LE+G+WIHMY DKN LR+T ICNALIEMY KCGCI++A
Sbjct: 239 IEPDEISIIAVLPACAQLGALEVGKWIHMYADKNGFLRKTGICNALIEMYAKCGCIDEAW 298
Query: 305 QLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTG 364
LFDQ+VE+DV+SWST+IGGLANHGK ++AI LF EM +++V PN+ITF+G+L AC+HTG
Sbjct: 299 NLFDQLVEKDVISWSTMIGGLANHGKGYEAIQLFEEMCKVRVAPNEITFLGVLLACSHTG 358
Query: 365 FWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKPDAKIWGSL 424
W+EGL YFD M +HIE +IEHYGCL+DLLGR+G L QAL+ I +MP+KPD++IW SL
Sbjct: 359 LWDEGLKYFDVMSASYHIEPEIEHYGCLIDLLGRSGCLGQALDTISKMPIKPDSRIWNSL 418
Query: 425 LSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMK 484
LSSCR + NL+IAVIA++ L+ LEPE++GNYVLL+N+YA+HG+WEDVS +RKLIR+K +K
Sbjct: 419 LSSCRIHRNLQIAVIAVKQLMELEPEESGNYVLLANMYAEHGKWEDVSNIRKLIRNKRIK 478
Query: 485 KTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMYED 538
KTPG S IEVNN VQEFVS DD+KPF +++FW+LE LAL+Q R D+++ + ED
Sbjct: 479 KTPGSSSIEVNNVVQEFVSSDDSKPFSQEVFWILEGLALNQTRTNDLMEPVEED 532
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15225375|ref|NP_179644.1| mitochondrial editing factor 21 [Arabidopsis thaliana] gi|75337271|sp|Q9SIL5.1|PP165_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g20540 gi|4586036|gb|AAD25654.1| unknown protein [Arabidopsis thaliana] gi|67633530|gb|AAY78689.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|330251931|gb|AEC07025.1| mitochondrial editing factor 21 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/524 (62%), Positives = 417/524 (79%), Gaps = 6/524 (1%)
Query: 9 SIKELEDRFVPILQSCENLIELKKIHTQILKYLLSQSNFLVTKMIDVCNSGGDLAYASLL 68
I+E+E+ F+P LQ ++ E KKI+ I+ + LSQS+F+VTKM+D C+ D+ YA+ L
Sbjct: 5 GIREVENYFIPFLQRVKSRNEWKKINASIIIHGLSQSSFMVTKMVDFCDKIEDMDYATRL 64
Query: 69 FKQVKEPNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCA 128
F QV PNVFLYN++IRAYT+N LY I +YKQ+LR S LPD+FT PF+ KSCA
Sbjct: 65 FNQVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRK----SFELPDRFTFPFMFKSCA 120
Query: 129 GLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNN 188
L LGKQ+H H+CKFG + H +TENAL+D+Y K D+L++AHKVF+EM +RD+++WN+
Sbjct: 121 SLGSCYLGKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNS 180
Query: 189 LISGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPD 248
L+SGYARLGQMKKA+ LF M TIVSWTAMISGYT IG Y EA+D FR+MQ+ GIEPD
Sbjct: 181 LLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPD 240
Query: 249 EISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFD 308
EIS++SVLP+CAQLGSLELG+WIH+Y ++ L++T +CNALIEMY KCG I+QA QLF
Sbjct: 241 EISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFG 300
Query: 309 QMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNE 368
QM +DV+SWST+I G A HG AH AI F+EMQR KV PN ITF+GLLSAC+H G W E
Sbjct: 301 QMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQE 360
Query: 369 GLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKPDAKIWGSLLSSC 428
GL YFD M++D+ IE KIEHYGCL+D+L RAG+L++A+ I + MPMKPD+KIWGSLLSSC
Sbjct: 361 GLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMKPDSKIWGSLLSSC 420
Query: 429 RTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPG 488
RT NL++A++AM+HL+ LEPED GNYVLL+NIYA G+WEDVSR+RK+IR+++MKKTPG
Sbjct: 421 RTPGNLDVALVAMDHLVELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIRNENMKKTPG 480
Query: 489 CSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVI 532
SLIEVNN VQEFVSGD++KPF +I +L+L HQD +DVI
Sbjct: 481 GSLIEVNNIVQEFVSGDNSKPFWTEISIVLQLFTSHQD--QDVI 522
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296081956|emb|CBI20961.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 691 bits (1782), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/538 (62%), Positives = 415/538 (77%), Gaps = 36/538 (6%)
Query: 4 RIGALSIKELEDRFVPILQSCENLIELKKIHTQILKYLLSQSNFLVTKMIDVCNSGGDLA 63
++ AL I+E+ED FVPIL+ C N++ELKKIH I+K+ LSQS+FLVTKM+DVCN G+
Sbjct: 49 KLRALKIREMEDMFVPILKDCPNIVELKKIHAHIVKFSLSQSSFLVTKMVDVCNHYGETE 108
Query: 64 YASLLFKQVKEPNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFV 123
YA+LLFK V +PN FLYNAMIRAY +N +Y LAI +YKQML +P + I PDKFT PFV
Sbjct: 109 YANLLFKGVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFV 168
Query: 124 IKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRD- 182
+KSCAGL+C LGKQ+H HV KFG KS+++ EN+L+++Y KCD L +AH+VFEEMT+RD
Sbjct: 169 VKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDA 228
Query: 183 -IVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQ 241
I +W ++SGYAR IG YA+AL+ FR+MQ
Sbjct: 229 TIFSWTAIVSGYAR-------------------------------IGCYADALEFFRRMQ 257
Query: 242 MVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCIN 301
MVGIEPDEIS+VSVLP CAQLG+LELG+WIH+Y DK LR +CNALIEMY KCG I+
Sbjct: 258 MVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSID 317
Query: 302 QASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACA 361
Q +LFDQM ERDV+SWST+I GLANHG+A +AI LF EMQ+ K+ P+ ITF+GLL+ACA
Sbjct: 318 QGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACA 377
Query: 362 HTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKPDAKIW 421
H G NEGL YF+SMKRD++IE +EHYGCLV+LLG +GRLDQAL ++++MP KPD+ IW
Sbjct: 378 HAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELVKKMPRKPDSPIW 437
Query: 422 GSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481
GSLLSSCR++ NL+IAVIAMEHLL LEP DTGNYVLLSN+YA G+W+ VSRMRKL+RSK
Sbjct: 438 GSLLSSCRSHGNLKIAVIAMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSK 497
Query: 482 SMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMYEDI 539
SMKKTPGCS IEV+N VQEF SGDD+KPF K I +L+LL +HQ + +I+IM DI
Sbjct: 498 SMKKTPGCSSIEVDNMVQEFASGDDSKPFSKAICRVLKLLVMHQSK---IIEIMVHDI 552
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297832654|ref|XP_002884209.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297330049|gb|EFH60468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 688 bits (1776), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/523 (61%), Positives = 418/523 (79%), Gaps = 6/523 (1%)
Query: 10 IKELEDRFVPILQSCENLIELKKIHTQILKYLLSQSNFLVTKMIDVCNSGGDLAYASLLF 69
I+E+E+ F+P LQ ++ E KKIH I+ + LSQS+F+VTKM+D+C+ GD+ YA+ LF
Sbjct: 6 IREVENYFIPFLQRVKSRNEWKKIHACIIVHGLSQSSFMVTKMVDLCDKLGDMDYATRLF 65
Query: 70 KQVKEPNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAG 129
QV PNVFLYN++IRAYT+N LY I +YKQ+LR ++ PD+FT PF+ KSCA
Sbjct: 66 NQVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRK----TIEFPDRFTFPFMFKSCAS 121
Query: 130 LLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNL 189
L LGKQ+H H+ KFG + H +TENAL+D+Y K D+L++AHKVF+EM++RD+++WN+L
Sbjct: 122 LGSCYLGKQVHGHLYKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMSERDVISWNSL 181
Query: 190 ISGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDE 249
+SGYARLGQMKKA+ LF M TIVSWTAMISGYT IG Y EA+D FR+MQ+ GIEPDE
Sbjct: 182 LSGYARLGQMKKAKGLFHLMIDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDE 241
Query: 250 ISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQ 309
IS++SVLP+CA LGSLELG+WIHMY ++ LL++T +CNALIEMY KCG ++QA QLF+Q
Sbjct: 242 ISLISVLPSCAHLGSLELGKWIHMYAERRGLLKQTGVCNALIEMYSKCGMLSQAIQLFEQ 301
Query: 310 MVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEG 369
+DV+SWST+I G A HG AH+A F EMQR KV PN ITF+GLLSAC+H G W +G
Sbjct: 302 TKGKDVISWSTMISGYAYHGNAHRAFETFIEMQRAKVKPNGITFLGLLSACSHVGLWQQG 361
Query: 370 LMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKPDAKIWGSLLSSCR 429
L YFD M++D+ IE KIEHYGCL+D+L RAG+L++A+ I + MP+KPD+KIWGSLLSSCR
Sbjct: 362 LKYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPVKPDSKIWGSLLSSCR 421
Query: 430 TYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGC 489
T NL++A++AM+HL+ +EP+D GNYVLL+NIYA G+WEDVSR+RK+IR ++MKKTPGC
Sbjct: 422 TKGNLDVALVAMDHLVEVEPDDMGNYVLLANIYADLGKWEDVSRLRKIIRKENMKKTPGC 481
Query: 490 SLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVI 532
SLIEVNN VQEFV+GD++KPF +I +L+L HQD +DVI
Sbjct: 482 SLIEVNNIVQEFVAGDNSKPFWTEISLVLQLFTSHQD--QDVI 522
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359476090|ref|XP_003631788.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At2g20540-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/514 (62%), Positives = 408/514 (79%), Gaps = 1/514 (0%)
Query: 27 LIELKKIHTQILKYLLSQSNFLVTKMIDVCNSGGDLAYASLLFKQVKEPNVFLYNAMIRA 86
++ELKKIH ++K+ LS S+FLVTKM+D+CN G+ YA+LLFK+V +PN FLYNAMIRA
Sbjct: 1 MVELKKIHAHVVKFSLSXSSFLVTKMVDMCNHHGETEYANLLFKRVADPNAFLYNAMIRA 60
Query: 87 YTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKF 146
Y +N +Y LAI ++KQML + PDKFT PFV+K CAGL+C +LGKQ+H H KF
Sbjct: 61 YKHNKVYILAITVHKQMLGHSHGENPXFPDKFTFPFVVKXCAGLMCYNLGKQVHGHAFKF 120
Query: 147 GLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLF 206
G KS+++ EN+L+++Y KCD L +AH+VFEEMT+RD V+WN LISG+ RLGQM++AR +F
Sbjct: 121 GPKSNTVIENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGHVRLGQMRRARAIF 180
Query: 207 DKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLE 266
+++ TI SWTA++SGY IG +A AL+ FR+MQMV IE DEIS+VSVLPACAQLG+LE
Sbjct: 181 EELQDKTIFSWTAIVSGYARIGCHAVALEFFRRMQMVDIELDEISLVSVLPACAQLGALE 240
Query: 267 LGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLA 326
LG+WIH+Y DK LR +CNALIE+Y K G +++ +LF +M ERDV+SWST+I GLA
Sbjct: 241 LGKWIHIYADKAGFLRDICVCNALIEVYAKRGSMDEGRRLFHKMNERDVISWSTMIVGLA 300
Query: 327 NHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKI 386
NHG+A +AI LF EMQ+ KV PN ITF+GLLSACAH G NEGL YF+SM+RD +IE +
Sbjct: 301 NHGRAREAIELFQEMQKAKVEPNIITFVGLLSACAHAGLLNEGLGYFESMERDDNIEPGV 360
Query: 387 EHYGCLVDLLGRAGRLDQALNIIEEMPMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLV 446
EHYGCLV+LLG +GRLDQAL +I++MPMKPD+ IWG L SSCR++ NLEI IAMEHLL
Sbjct: 361 EHYGCLVNLLGLSGRLDQALELIKKMPMKPDSDIWGLLSSSCRSHGNLEIVAIAMEHLLE 420
Query: 447 LEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDD 506
LEP+DTGNY+ LSN+YA G+W+ VSRMRKL+ SK M KTPGCS IEV+N VQE+ SGDD
Sbjct: 421 LEPDDTGNYITLSNLYADLGKWDGVSRMRKLMSSKYMNKTPGCSSIEVDNMVQEYASGDD 480
Query: 507 TKPFLKDIFWLLELLALHQDRA-KDVIDIMYEDI 539
+KPF K I+ +L+LL +HQ + D+I+IM DI
Sbjct: 481 SKPFSKAIYRVLKLLVMHQSKMDDDIIEIMVHDI 514
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 541 | ||||||
| TAIR|locus:2054789 | 534 | MEF21 "mitochondrial editing f | 0.955 | 0.968 | 0.627 | 7e-180 | |
| TAIR|locus:2161018 | 530 | AT5G56310 "AT5G56310" [Arabido | 0.957 | 0.977 | 0.408 | 1.4e-103 | |
| TAIR|locus:2144143 | 622 | AT5G06540 [Arabidopsis thalian | 0.894 | 0.778 | 0.391 | 1.4e-103 | |
| TAIR|locus:2093920 | 687 | AT3G15930 "AT3G15930" [Arabido | 0.927 | 0.730 | 0.388 | 3.8e-101 | |
| TAIR|locus:2154855 | 620 | AT5G66520 "AT5G66520" [Arabido | 0.903 | 0.788 | 0.388 | 4.5e-98 | |
| TAIR|locus:2154389 | 646 | LPA66 "LOW PSII ACCUMULATION 6 | 0.909 | 0.761 | 0.393 | 7.4e-98 | |
| TAIR|locus:2045580 | 559 | AT2G42920 [Arabidopsis thalian | 0.914 | 0.885 | 0.388 | 5.9e-96 | |
| TAIR|locus:2054131 | 697 | SLO2 "AT2G13600" [Arabidopsis | 0.953 | 0.740 | 0.372 | 3.3e-95 | |
| TAIR|locus:2096414 | 882 | AT3G03580 [Arabidopsis thalian | 0.628 | 0.385 | 0.382 | 6.1e-95 | |
| TAIR|locus:2159602 | 511 | AT5G08510 "AT5G08510" [Arabido | 0.889 | 0.941 | 0.401 | 2.3e-94 |
| TAIR|locus:2054789 MEF21 "mitochondrial editing factor 21" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1746 (619.7 bits), Expect = 7.0e-180, P = 7.0e-180
Identities = 328/523 (62%), Positives = 417/523 (79%)
Query: 10 IKELEDRFVPILQSCENLIELKKIHTQILKYLLSQSNFLVTKMIDVCNSGGDLAYASLLF 69
I+E+E+ F+P LQ ++ E KKI+ I+ + LSQS+F+VTKM+D C+ D+ YA+ LF
Sbjct: 6 IREVENYFIPFLQRVKSRNEWKKINASIIIHGLSQSSFMVTKMVDFCDKIEDMDYATRLF 65
Query: 70 KQVKEPNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAG 129
QV PNVFLYN++IRAYT+N LY I +YKQ+LR S LPD+FT PF+ KSCA
Sbjct: 66 NQVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRK----SFELPDRFTFPFMFKSCAS 121
Query: 130 LLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNL 189
L LGKQ+H H+CKFG + H +TENAL+D+Y K D+L++AHKVF+EM +RD+++WN+L
Sbjct: 122 LGSCYLGKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSL 181
Query: 190 ISGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDE 249
+SGYARLGQMKKA+ LF M TIVSWTAMISGYT IG Y EA+D FR+MQ+ GIEPDE
Sbjct: 182 LSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDE 241
Query: 250 ISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQ 309
IS++SVLP+CAQLGSLELG+WIH+Y ++ L++T +CNALIEMY KCG I+QA QLF Q
Sbjct: 242 ISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQ 301
Query: 310 MVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEG 369
M +DV+SWST+I G A HG AH AI F+EMQR KV PN ITF+GLLSAC+H G W EG
Sbjct: 302 MEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEG 361
Query: 370 LMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKPDAKIWGSLLSSCR 429
L YFD M++D+ IE KIEHYGCL+D+L RAG+L++A+ I + MPMKPD+KIWGSLLSSCR
Sbjct: 362 LRYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMKPDSKIWGSLLSSCR 421
Query: 430 TYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGC 489
T NL++A++AM+HL+ LEPED GNYVLL+NIYA G+WEDVSR+RK+IR+++MKKTPG
Sbjct: 422 TPGNLDVALVAMDHLVELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIRNENMKKTPGG 481
Query: 490 SLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVI 532
SLIEVNN VQEFVSGD++KPF +I +L+L HQD+ DVI
Sbjct: 482 SLIEVNNIVQEFVSGDNSKPFWTEISIVLQLFTSHQDQ--DVI 522
|
|
| TAIR|locus:2161018 AT5G56310 "AT5G56310" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1026 (366.2 bits), Expect = 1.4e-103, P = 1.4e-103
Identities = 216/529 (40%), Positives = 325/529 (61%)
Query: 1 MAARIGALSIKELEDRFVPILQ-SCENLIELKKIHTQILKYLLSQSNFLVTKMIDVCNSG 59
M RI ALS+ + FV L+ NL LK+ H ++ L++ N V K I+ C++
Sbjct: 1 MIQRINALSLSSGLNWFVTSLKIHGNNLKTLKQSHCYMIITGLNRDNLNVAKFIEACSNA 60
Query: 60 GDLAYASLLFKQVKEPNVFLYNAMIRAYT---NNHLYGLAINLYKQMLRDPRTGSLILPD 116
G L YA +F PN +L+N MIRA + + + +AI +Y+++ PD
Sbjct: 61 GHLRYAYSVFTHQPCPNTYLHNTMIRALSLLDEPNAHSIAITVYRKLW-----ALCAKPD 115
Query: 117 KFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFE 176
FT PFV+K + G+QIH V FG S L+ +Y C L +A K+F+
Sbjct: 116 TFTFPFVLKIAVRVSDVWFGRQIHGQVVVFGFDSSVHVVTGLIQMYFSCGGLGDARKMFD 175
Query: 177 EMTDRDIVAWNNLISGYARLGQMKKARMLFDKMP--YTTIVSWTAMISGYTHIGSYAEAL 234
EM +D+ WN L++GY ++G+M +AR L + MP VSWT +ISGY G +EA+
Sbjct: 176 EMLVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASEAI 235
Query: 235 DVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMY 294
+VF++M M +EPDE+++++VL ACA LGSLELGE I Y D + R + NA+I+MY
Sbjct: 236 EVFQRMLMENVEPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVIDMY 295
Query: 295 IKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFI 354
K G I +A +F+ + ER+VV+W+T+I GLA HG +A+ +F+ M + V PND+TFI
Sbjct: 296 AKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPNDVTFI 355
Query: 355 GLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPM 414
+LSAC+H G+ + G F+SM+ + I IEHYGC++DLLGRAG+L +A +I+ MP
Sbjct: 356 AILSACSHVGWVDLGKRLFNSMRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIKSMPF 415
Query: 415 KPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRM 474
K +A IWGSLL++ + +LE+ A+ L+ LEP ++GNY+LL+N+Y+ GRW++ M
Sbjct: 416 KANAAIWGSLLAASNVHHDLELGERALSELIKLEPNNSGNYMLLANLYSNLGRWDESRMM 475
Query: 475 RKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLAL 523
R +++ +KK G S IEV N V +F+SGD T P ++ I +L+ + L
Sbjct: 476 RNMMKGIGVKKMAGESSIEVENRVYKFISGDLTHPQVERIHEILQEMDL 524
|
|
| TAIR|locus:2144143 AT5G06540 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1026 (366.2 bits), Expect = 1.4e-103, P = 1.4e-103
Identities = 194/496 (39%), Positives = 317/496 (63%)
Query: 20 ILQSCENLIELKKIHTQILKYLLSQSNFLVTKMIDVC------NSGGDL-AYASLLFKQV 72
+LQSC + +LK IH +L+ L F+ ++++ +C N +L YA +F Q+
Sbjct: 18 LLQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYGIFSQI 77
Query: 73 KEPNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLC 132
+ PN+F++N +IR ++ A Y QML+ S I PD T PF+IK+ + + C
Sbjct: 78 QNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLK-----SRIWPDNITFPFLIKASSEMEC 132
Query: 133 PSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISG 192
+G+Q H+ + +FG ++ EN+L+ +Y C + A ++F +M RD+V+W ++++G
Sbjct: 133 VLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAG 192
Query: 193 YARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISI 252
Y + G ++ AR +FD+MP+ + +W+ MI+GY + +A+D+F M+ G+ +E +
Sbjct: 193 YCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVM 252
Query: 253 VSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE 312
VSV+ +CA LG+LE GE + Y K+H+ ++ AL++M+ +CG I +A +F+ + E
Sbjct: 253 VSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPE 312
Query: 313 RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMY 372
D +SWS++I GLA HG AHKA+H F +M L P D+TF +LSAC+H G +GL
Sbjct: 313 TDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEI 372
Query: 373 FDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKPDAKIWGSLLSSCRTYS 432
+++MK+DH IE ++EHYGC+VD+LGRAG+L +A N I +M +KP+A I G+LL +C+ Y
Sbjct: 373 YENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKIYK 432
Query: 433 NLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLI 492
N E+A L+ ++PE +G YVLLSNIYA G+W+ + +R +++ K +KK PG SLI
Sbjct: 433 NTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWSLI 492
Query: 493 EVNNEVQEFVSGDDTK 508
E++ ++ +F GDD K
Sbjct: 493 EIDGKINKFTMGDDQK 508
|
|
| TAIR|locus:2093920 AT3G15930 "AT3G15930" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1003 (358.1 bits), Expect = 3.8e-101, P = 3.8e-101
Identities = 198/510 (38%), Positives = 314/510 (61%)
Query: 31 KKIHTQILKYLLSQSNFLVTKMIDVCNSGGDLAYASLLFKQVKEPNVFLYNAMIRAYTNN 90
KK+H ++K+ L + ++ ++ + + G + A +F + + +VF +N MI Y
Sbjct: 155 KKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRM 214
Query: 91 HLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKS 150
Y +I L +M R+ L+ P TL V+ +C+ + L K++H +V + +
Sbjct: 215 KEYEESIELLVEMERN-----LVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEP 269
Query: 151 HSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMP 210
ENAL++ Y C E+ A ++F M RD+++W +++ GY G +K AR FD+MP
Sbjct: 270 SLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMP 329
Query: 211 YTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEW 270
+SWT MI GY G + E+L++FR+MQ G+ PDE ++VSVL ACA LGSLE+GEW
Sbjct: 330 VRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEW 389
Query: 271 IHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGK 330
I Y DKN + V+ NALI+MY KCGC +A ++F M +RD +W+ ++ GLAN+G+
Sbjct: 390 IKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQ 449
Query: 331 AHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYG 390
+AI +F +MQ + + P+DIT++G+LSAC H+G ++ +F M+ DH IE + HYG
Sbjct: 450 GQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYG 509
Query: 391 CLVDLLGRAGRLDQALNIIEEMPMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPE 450
C+VD+LGRAG + +A I+ +MPM P++ +WG+LL + R +++ +A +A + +L LEP+
Sbjct: 510 CMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEPD 569
Query: 451 DTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPF 510
+ Y LL NIYA RW+D+ +R+ I ++KKTPG SLIEVN EFV+GD +
Sbjct: 570 NGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVAGDKSHLQ 629
Query: 511 LKDIFWLLELLALHQDRAK---DVIDIMYE 537
++I+ LE LA A D ++++E
Sbjct: 630 SEEIYMKLEELAQESTFAAYLPDTSELLFE 659
|
|
| TAIR|locus:2154855 AT5G66520 "AT5G66520" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 974 (347.9 bits), Expect = 4.5e-98, P = 4.5e-98
Identities = 193/497 (38%), Positives = 301/497 (60%)
Query: 21 LQSCENLIELKKIHTQILKYLLSQSNFLVTKMIDVC--NSGGD-LAYASLLFKQVKEPNV 77
LQ C ELK+IH ++LK L Q ++ +TK + C ++ D L YA ++F P+
Sbjct: 21 LQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDT 80
Query: 78 FLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGK 137
FL+N MIR ++ + ++ LY++ML S + +T P ++K+C+ L
Sbjct: 81 FLWNLMIRGFSCSDEPERSLLLYQRMLC-----SSAPHNAYTFPSLLKACSNLSAFEETT 135
Query: 138 QIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLG 197
QIHA + K G ++ N+L++ Y AH +F+ + + D V+WN++I GY + G
Sbjct: 136 QIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAG 195
Query: 198 QMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLP 257
+M A LF KM +SWT MISGY EAL +F +MQ +EPD +S+ + L
Sbjct: 196 KMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALS 255
Query: 258 ACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERDVVS 317
ACAQLG+LE G+WIH Y +K + +V+ LI+MY KCG + +A ++F + ++ V +
Sbjct: 256 ACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQA 315
Query: 318 WSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMK 377
W+ +I G A HG +AI F EMQ++ + PN ITF +L+AC++TG EG + F SM+
Sbjct: 316 WTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSME 375
Query: 378 RDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKPDAKIWGSLLSSCRTYSNLEIA 437
RD++++ IEHYGC+VDLLGRAG LD+A I+EMP+KP+A IWG+LL +CR + N+E+
Sbjct: 376 RDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELG 435
Query: 438 VIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNE 497
E L+ ++P G YV +NI+A +W+ + R+L++ + + K PGCS I +
Sbjct: 436 EEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGT 495
Query: 498 VQEFVSGDDTKPFLKDI 514
EF++GD + P ++ I
Sbjct: 496 THEFLAGDRSHPEIEKI 512
|
|
| TAIR|locus:2154389 LPA66 "LOW PSII ACCUMULATION 66" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 972 (347.2 bits), Expect = 7.4e-98, P = 7.4e-98
Identities = 203/516 (39%), Positives = 307/516 (59%)
Query: 19 PILQSCENLIELKKIHTQILKYLLSQSNFLVTKMIDVCNSGG----DLAYASLLFKQVKE 74
P + +C + +L +IH +K + +++ C + DL YA +F Q+ +
Sbjct: 28 PQINNCRTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQ 87
Query: 75 PNVFLYNAMIRAYTNNHLYG--LAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLC 132
N F +N +IR ++ + +AI L+ +M+ D + P++FT P V+K+CA
Sbjct: 88 RNCFSWNTIIRGFSESDEDKALIAITLFYEMMSD----EFVEPNRFTFPSVLKACAKTGK 143
Query: 133 PSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEE---------MTDR-- 181
GKQIH K+G + L+ +Y C + +A +F + MTDR
Sbjct: 144 IQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRK 203
Query: 182 ---DIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFR 238
+IV WN +I GY RLG K ARMLFDKM ++VSW MISGY+ G + +A++VFR
Sbjct: 204 RDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFR 263
Query: 239 QMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCG 298
+M+ I P+ +++VSVLPA ++LGSLELGEW+H+Y + + + V+ +ALI+MY KCG
Sbjct: 264 EMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCG 323
Query: 299 CINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLS 358
I +A +F+++ +V++WS +I G A HG+A AI F +M++ V P+D+ +I LL+
Sbjct: 324 IIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLT 383
Query: 359 ACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKPDA 418
AC+H G EG YF M +E +IEHYGC+VDLLGR+G LD+A I MP+KPD
Sbjct: 384 ACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDD 443
Query: 419 KIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLI 478
IW +LL +CR N+E+ L+ + P D+G YV LSN+YA G W +VS MR +
Sbjct: 444 VIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRM 503
Query: 479 RSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDI 514
+ K ++K PGCSLI+++ + EFV DD+ P K+I
Sbjct: 504 KEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEI 539
|
|
| TAIR|locus:2045580 AT2G42920 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 954 (340.9 bits), Expect = 5.9e-96, P = 5.9e-96
Identities = 194/499 (38%), Positives = 307/499 (61%)
Query: 24 CENLIELKKIHTQILKYLLSQSNFLVTKMIDVC-NSGGDLAYASLLFKQVKEPNVFLYNA 82
C + ELK+IH ++K L ++++ C S D+ YA L+F ++ N F++N
Sbjct: 35 CSTMRELKQIHASLIKTGLISDTVTASRVLAFCCASPSDMNYAYLVFTRINHKNPFVWNT 94
Query: 83 MIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAH 142
+IR ++ + +AI+++ ML + + P + T P V K+ L G+Q+H
Sbjct: 95 IIRGFSRSSFPEMAISIFIDMLCSSPS---VKPQRLTYPSVFKAYGRLGQARDGRQLHGM 151
Query: 143 VCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKA 202
V K GL+ S N +L +Y C LIEA ++F M D+VAWN++I G+A+ G + +A
Sbjct: 152 VIKEGLEDDSFIRNTMLHMYVTCGCLIEAWRIFLGMIGFDVVAWNSMIMGFAKCGLIDQA 211
Query: 203 RMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQL 262
+ LFD+MP VSW +MISG+ G + +ALD+FR+MQ ++PD ++VS+L ACA L
Sbjct: 212 QNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYL 271
Query: 263 GSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERDVVSWSTVI 322
G+ E G WIH Y +N +++ ALI+MY KCGCI + +F+ ++ + W+++I
Sbjct: 272 GASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCWNSMI 331
Query: 323 GGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHI 382
GLAN+G +A+ LF E++R + P+ ++FIG+L+ACAH+G + +F MK + I
Sbjct: 332 LGLANNGFEERAMDLFSELERSGLEPDSVSFIGVLTACAHSGEVHRADEFFRLMKEKYMI 391
Query: 383 EHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKPDAKIWGSLLSSCRTYSNLEIAVIAME 442
E I+HY +V++LG AG L++A +I+ MP++ D IW SLLS+CR N+E+A A +
Sbjct: 392 EPSIKHYTLMVNVLGGAGLLEEAEALIKNMPVEEDTVIWSSLLSACRKIGNVEMAKRAAK 451
Query: 443 HLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFV 502
L L+P++T YVLLSN YA +G +E+ R L++ + M+K GCS IEV+ EV EF+
Sbjct: 452 CLKKLDPDETCGYVLLSNAYASYGLFEEAVEQRLLMKERQMEKEVGCSSIEVDFEVHEFI 511
Query: 503 SGDDTKPFLKDIFWLLELL 521
S T P +I+ LL++L
Sbjct: 512 SCGGTHPKSAEIYSLLDIL 530
|
|
| TAIR|locus:2054131 SLO2 "AT2G13600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 947 (338.4 bits), Expect = 3.3e-95, P = 3.3e-95
Identities = 198/531 (37%), Positives = 311/531 (58%)
Query: 14 EDRFVPILQSCENLIELKK---IHTQILKYLLSQSNFLVTKMIDVCNSGGDLAYASLLFK 70
E F +L +C L ++ K +H+ I K ++ + ++D+ + G++ A +F
Sbjct: 152 EYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFD 211
Query: 71 QVKEPNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGL 130
++ + NV +N++I + N A+++++ ML S + PD+ TL VI +CA L
Sbjct: 212 EMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLE-----SRVEPDEVTLASVISACASL 266
Query: 131 LCPSLGKQIHAHVCKFG-LKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNL 189
+G+++H V K L++ I NA +D+Y KC + EA +F+ M R+++A ++
Sbjct: 267 SAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSM 326
Query: 190 ISGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDE 249
ISGYA K AR++F KM +VSW A+I+GYT G EAL +F ++ + P
Sbjct: 327 ISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTH 386
Query: 250 ISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRT------VICNALIEMYIKCGCINQA 303
S ++L ACA L L LG H++ K+ ++ + N+LI+MY+KCGC+ +
Sbjct: 387 YSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEG 446
Query: 304 SQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHT 363
+F +M+ERD VSW+ +I G A +G ++A+ LF EM P+ IT IG+LSAC H
Sbjct: 447 YLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHA 506
Query: 364 GFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKPDAKIWGS 423
GF EG YF SM RD + +HY C+VDLLGRAG L++A ++IEEMPM+PD+ IWGS
Sbjct: 507 GFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGS 566
Query: 424 LLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSM 483
LL++C+ + N+ + E LL +EP ++G YVLLSN+YA+ G+WEDV +RK +R + +
Sbjct: 567 LLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGV 626
Query: 484 KKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDI 534
K PGCS I++ F+ D + P K I LL++L +D +I
Sbjct: 627 TKQPGCSWIKIQGHDHVFMVKDKSHPRKKQIHSLLDILIAEMRPEQDHTEI 677
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| TAIR|locus:2096414 AT3G03580 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 647 (232.8 bits), Expect = 6.1e-95, Sum P(2) = 6.1e-95
Identities = 130/340 (38%), Positives = 197/340 (57%)
Query: 182 DIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQ 241
D+ N LI YA+ G++ + +F M V+W +IS G +A L V QM+
Sbjct: 442 DLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQMR 501
Query: 242 MVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCIN 301
+ PD + + LP CA L + LG+ IH + I NALIEMY KCGC+
Sbjct: 502 KSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLE 561
Query: 302 QASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACA 361
+S++F++M RDVV+W+ +I +G+ KA+ F +M++ + P+ + FI ++ AC+
Sbjct: 562 NSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACS 621
Query: 362 HTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKPDAKIW 421
H+G +EGL F+ MK + I+ IEHY C+VDLL R+ ++ +A I+ MP+KPDA IW
Sbjct: 622 HSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIKPDASIW 681
Query: 422 GSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481
S+L +CRT ++E A ++ L P+D G +L SN YA +W+ VS +RK ++ K
Sbjct: 682 ASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYAALRKWDKVSLIRKSLKDK 741
Query: 482 SMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELL 521
+ K PG S IEV V F SGDD+ P + I+ LE+L
Sbjct: 742 HITKNPGYSWIEVGKNVHVFSSGDDSAPQSEAIYKSLEIL 781
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| TAIR|locus:2159602 AT5G08510 "AT5G08510" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 939 (335.6 bits), Expect = 2.3e-94, P = 2.3e-94
Identities = 198/493 (40%), Positives = 297/493 (60%)
Query: 30 LKKIHTQILKYLLSQSNFLVTKMIDVCNSGGDLAYASLLFKQVKEPNVFLYNAMIRAYTN 89
+K++H L+ + ++ L+ +++ + N L YA LF + FLYN +I+AY
Sbjct: 4 IKQLHAHCLRTGVDETKDLLQRLLLIPN----LVYARKLFDHHQNSCTFLYNKLIQAYYV 59
Query: 90 NHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLK 149
+H +I LY + D G + P T F+ + A + +H+ + G +
Sbjct: 60 HHQPHESIVLYNLLSFD---G--LRPSHHTFNFIFAASASFSSARPLRLLHSQFFRSGFE 114
Query: 150 SHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKM 209
S S L+ Y K L A +VF+EM+ RD+ WN +I+GY R G MK A LFD M
Sbjct: 115 SDSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITGYQRRGDMKAAMELFDSM 174
Query: 210 PYTTIVSWTAMISGYTHIGSYAEALDVFRQMQM-VGIEPDEISIVSVLPACAQLGSLELG 268
P + SWT +ISG++ G+Y+EAL +F M+ ++P+ I++VSVLPACA LG LE+G
Sbjct: 175 PRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITVVSVLPACANLGELEIG 234
Query: 269 EWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMV-ERDVVSWSTVIGGLAN 327
+ Y +N +CNA IEMY KCG I+ A +LF+++ +R++ SW+++IG LA
Sbjct: 235 RRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEELGNQRNLCSWNSMIGSLAT 294
Query: 328 HGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIE 387
HGK +A+ LF +M R P+ +TF+GLL AC H G +G F SM+ H I K+E
Sbjct: 295 HGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVHGGMVVKGQELFKSMEEVHKISPKLE 354
Query: 388 HYGCLVDLLGRAGRLDQALNIIEEMPMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVL 447
HYGC++DLLGR G+L +A ++I+ MPMKPDA +WG+LL +C + N+EIA IA E L L
Sbjct: 355 HYGCMIDLLGRVGKLQEAYDLIKTMPMKPDAVVWGTLLGACSFHGNVEIAEIASEALFKL 414
Query: 448 EPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCS-LIEVNNEVQEFVSGDD 506
EP + GN V++SNIYA + +W+ V RMRKL++ ++M K G S +EV +V +F D
Sbjct: 415 EPTNPGNCVIMSNIYAANEKWDGVLRMRKLMKKETMTKAAGYSYFVEVGVDVHKFTVEDK 474
Query: 507 TKPFLKDIFWLLE 519
+ P +I+ +LE
Sbjct: 475 SHPRSYEIYQVLE 487
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SIL5 | PP165_ARATH | No assigned EC number | 0.6259 | 0.9574 | 0.9700 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | fgenesh4_pg.C_LG_XVIII000327 | hypothetical protein (547 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 541 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-103 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-90 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-61 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-59 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 7e-36 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-24 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-14 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-11 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-07 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.004 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 328 bits (843), Expect = e-103
Identities = 159/474 (33%), Positives = 268/474 (56%), Gaps = 45/474 (9%)
Query: 53 IDVCNS-------GGDLAYASLLFKQVKEPNVFLYNAMIRAYTNNHLYGLAINLYKQMLR 105
+ VCNS G A +F +++ + + AMI Y N L A+ Y M +
Sbjct: 323 VSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQ 382
Query: 106 DPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKC 165
D + PD+ T+ V+ +CA L +G ++H + GL S+ + NAL+++Y KC
Sbjct: 383 DN-----VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKC 437
Query: 166 DELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYT 225
+ +A +VF + ++D++ SWT++I+G
Sbjct: 438 KCIDKALEVFHNIPEKDVI-------------------------------SWTSIIAGLR 466
Query: 226 HIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTV 285
EAL FRQM + ++P+ +++++ L ACA++G+L G+ IH + + +
Sbjct: 467 LNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGF 525
Query: 286 ICNALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLK 345
+ NAL+++Y++CG +N A F+ E+DVVSW+ ++ G HGK A+ LF+ M
Sbjct: 526 LPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESG 584
Query: 346 VPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQA 405
V P+++TFI LL AC+ +G +GL YF SM+ + I ++HY C+VDLLGRAG+L +A
Sbjct: 585 VNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEA 644
Query: 406 LNIIEEMPMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKH 465
N I +MP+ PD +WG+LL++CR + ++E+ +A +H+ L+P G Y+LL N+YA
Sbjct: 645 YNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADA 704
Query: 466 GRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLE 519
G+W++V+R+RK +R + PGCS +EV +V F++ D++ P +K+I +LE
Sbjct: 705 GKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLE 758
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Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 291 bits (746), Expect = 3e-90
Identities = 139/462 (30%), Positives = 237/462 (51%), Gaps = 36/462 (7%)
Query: 60 GDLAYASLLFKQVKEPNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFT 119
G L A LF ++ E N+ + +I + Y A L+++M D + T
Sbjct: 172 GMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWED-----GSDAEPRT 226
Query: 120 LPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMT 179
++++ AGL G+Q+H V K G+ + AL+D+Y KC ++ +A VF+ M
Sbjct: 227 FVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP 286
Query: 180 DRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQ 239
++ VAWN++++GYA + GY+ EAL ++ +
Sbjct: 287 EKTTVAWNSMLAGYA--------------------------LHGYSE-----EALCLYYE 315
Query: 240 MQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGC 299
M+ G+ D+ + ++ ++L LE + H + V AL+++Y K G
Sbjct: 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGR 375
Query: 300 INQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSA 359
+ A +FD+M ++++SW+ +I G NHG+ KA+ +F M V PN +TF+ +LSA
Sbjct: 376 MEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA 435
Query: 360 CAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKPDAK 419
C ++G +G F SM +H I+ + HY C+++LLGR G LD+A +I P KP
Sbjct: 436 CRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVN 495
Query: 420 IWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIR 479
+W +LL++CR + NLE+ +A E L + PE NYV+L N+Y GR + +++ + ++
Sbjct: 496 MWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLK 555
Query: 480 SKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELL 521
K + P C+ IEV + F SGD P ++I+ L+ L
Sbjct: 556 RKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDEL 597
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Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 217 bits (553), Expect = 1e-61
Identities = 127/440 (28%), Positives = 219/440 (49%), Gaps = 42/440 (9%)
Query: 14 EDRFVPILQSCEN---LIELKKIHTQILKYLLSQSNFLVTKMIDVCNSGGDLAYASLLFK 70
ED +V + + CE + E ++ ++ L S L M+ + G+L +A +F
Sbjct: 86 EDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFG 145
Query: 71 QVKEPNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGL 130
++ E ++F +N ++ Y + A+ LY +ML + + PD +T P V+++C G+
Sbjct: 146 KMPERDLFSWNVLVGGYAKAGYFDEALCLYHRML-----WAGVRPDVYTFPCVLRTCGGI 200
Query: 131 LCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLI 190
+ G+++HAHV +FG FE D D+V N LI
Sbjct: 201 PDLARGREVHAHVVRFG---------------------------FEL--DVDVV--NALI 229
Query: 191 SGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEI 250
+ Y + G + AR++FD+MP +SW AMISGY G E L++F M+ + ++PD +
Sbjct: 230 TMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLM 289
Query: 251 SIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQM 310
+I SV+ AC LG LG +H Y K +CN+LI+MY+ G +A ++F +M
Sbjct: 290 TITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM 349
Query: 311 VERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGL 370
+D VSW+ +I G +G KA+ + M++ V P++IT +LSACA G + G+
Sbjct: 350 ETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGV 409
Query: 371 MYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKPDAKIWGSLLSS-CR 429
+ +R I + + L+++ + +D+AL + +P K D W S+++
Sbjct: 410 KLHELAERKGLISYVVVA-NALIEMYSKCKCIDKALEVFHNIPEK-DVISWTSIIAGLRL 467
Query: 430 TYSNLEIAVIAMEHLLVLEP 449
E + + LL L+P
Sbjct: 468 NNRCFEALIFFRQMLLTLKP 487
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Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 211 bits (538), Expect = 2e-59
Identities = 110/351 (31%), Positives = 175/351 (49%), Gaps = 40/351 (11%)
Query: 17 FVPILQSCENLIEL---KKIHTQILKYLLSQSNFLVTKMIDVCNSGGDLAYASLLFKQVK 73
F +L++C + +L +++H ++++ +V +I + GD+ A L+F ++
Sbjct: 190 FPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP 249
Query: 74 EPNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCP 133
+ +NAMI Y N + L+ M + PD T+ VI +C L
Sbjct: 250 RRDCISWNAMISGYFENGECLEGLELFFTMRELS-----VDPDLMTITSVISACELLGDE 304
Query: 134 SLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGY 193
LG+++H +V K G D+ N+LI Y
Sbjct: 305 RLGREMHGYVVKTGF-------------------------------AVDVSVCNSLIQMY 333
Query: 194 ARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIV 253
LG +A +F +M VSWTAMISGY G +AL+ + M+ + PDEI+I
Sbjct: 334 LSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIA 393
Query: 254 SVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVER 313
SVL ACA LG L++G +H ++ L+ V+ NALIEMY KC CI++A ++F + E+
Sbjct: 394 SVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK 453
Query: 314 DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTG 364
DV+SW+++I GL + + +A+ F +M L + PN +T I LSACA G
Sbjct: 454 DVISWTSIIAGLRLNNRCFEALIFFRQM-LLTLKPNSVTLIAALSACARIG 503
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Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 7e-36
Identities = 73/236 (30%), Positives = 118/236 (50%), Gaps = 1/236 (0%)
Query: 180 DRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQ 239
+ D N ++ + + G + AR LFD+MP + SW +I G G+Y EA +FR+
Sbjct: 155 EPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFRE 214
Query: 240 MQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGC 299
M G + + + V +L A A LGS G+ +H K ++ T + ALI+MY KCG
Sbjct: 215 MWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGD 274
Query: 300 INQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSA 359
I A +FD M E+ V+W++++ G A HG + +A+ L++EM+ V + TF ++
Sbjct: 275 IEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRI 334
Query: 360 CAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMK 415
+ + R I LVDL + GR++ A N+ + MP K
Sbjct: 335 FSRLALLEHAKQAHAGLIR-TGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK 389
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Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (270), Expect = 1e-24
Identities = 79/312 (25%), Positives = 141/312 (45%), Gaps = 48/312 (15%)
Query: 31 KKIHTQILKYLLSQSNFLVTKMIDVCNSGGDLAYASLLFKQVKEPNVFLYNAMIRAYTNN 90
+++H +LK + F+ +ID+ + GD+ A +F + E +N+M+ Y
Sbjct: 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYA-- 301
Query: 91 HLYGL---AINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFG 147
L+G A+ LY +M S + D+FT +I+ + L KQ HA + + G
Sbjct: 302 -LHGYSEEALCLYYEMRD-----SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG 355
Query: 148 LKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFD 207
+ AL+DLY K W G+M+ AR +FD
Sbjct: 356 FPLDIVANTALVDLYSK---------------------W----------GRMEDARNVFD 384
Query: 208 KMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLEL 267
+MP ++SW A+I+GY + G +A+++F +M G+ P+ ++ ++VL AC G E
Sbjct: 385 RMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQ 444
Query: 268 GEWIHMYCDKNHLLR-RTVICNALIEMYIKCGCINQA-SQLFDQMVERDVVSWSTVIGGL 325
G I +NH ++ R + +IE+ + G +++A + + + V W L
Sbjct: 445 GWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMW----AAL 500
Query: 326 ANHGKAHKAIHL 337
+ HK + L
Sbjct: 501 LTACRIHKNLEL 512
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 2e-14
Identities = 50/206 (24%), Positives = 92/206 (44%), Gaps = 16/206 (7%)
Query: 228 GSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVIC 287
G +AL + MQ + + DE + V++ C ++E G + +H +
Sbjct: 65 GQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLG 124
Query: 288 NALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVP 347
NA++ M+++ G + A +F +M ERD+ SW+ ++GG A G +A+ L+H M V
Sbjct: 125 NAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVR 184
Query: 348 PNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHI-------EHKIEHYGCLVDLLGRAG 400
P+ TF +L C G R+ H E ++ L+ + + G
Sbjct: 185 PDVYTFPCVLRTCGGIPDLARG--------REVHAHVVRFGFELDVDVVNALITMYVKCG 236
Query: 401 RLDQALNIIEEMPMKPDAKIWGSLLS 426
+ A + + MP + D W +++S
Sbjct: 237 DVVSARLVFDRMPRR-DCISWNAMIS 261
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 70.3 bits (172), Expect = 1e-12
Identities = 69/296 (23%), Positives = 131/296 (44%), Gaps = 29/296 (9%)
Query: 163 GKCDELIEAHKVFEEMTDRDIVA----WNNLISGYARLGQMKKARMLFDKMPYTTI---- 214
GK D + E VF EM + + A + LI G AR GQ+ KA + M +
Sbjct: 486 GKVDAMFE---VFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDR 542
Query: 215 VSWTAMISGYTHIGSYAEALDVFRQM--QMVGIEPDEISIVSVLPACAQLG----SLELG 268
V + A+IS G+ A DV +M + I+PD I++ +++ ACA G + E+
Sbjct: 543 VVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602
Query: 269 EWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERDV----VSWSTVIGG 324
+ IH Y K T+ N+ + G + A ++D M ++ V V +S ++
Sbjct: 603 QMIHEYNIKGTPEVYTIAVNS----CSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDV 658
Query: 325 LANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEH 384
+ G KA + + ++ + +++ L+ AC++ W + L ++ +K +
Sbjct: 659 AGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK-SIKLRP 717
Query: 385 KIEHYGCLVDLLGRAGRLDQALNIIEEMP---MKPDAKIWGSLLSSCRTYSNLEIA 437
+ L+ L +L +AL ++ EM + P+ + LL + + ++
Sbjct: 718 TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVG 773
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.4 bits (140), Expect = 6e-11
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 314 DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAH 362
DVV+++T+I G GK +A+ LF+EM++ + PN T+ L+
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 63.0 bits (153), Expect = 2e-10
Identities = 57/250 (22%), Positives = 114/250 (45%), Gaps = 20/250 (8%)
Query: 199 MKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPA 258
+++A + D YTT++S A G +VF +M G+E + + +++
Sbjct: 463 VQEAGLKADCKLYTTLISTCA------KSGKVDAMFEVFHEMVNAGVEANVHTFGALIDG 516
Query: 259 CAQLGSL--ELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQM------ 310
CA+ G + G + M KN R V+ NALI + G +++A + +M
Sbjct: 517 CARAGQVAKAFGAYGIMR-SKNVKPDR-VVFNALISACGQSGAVDRAFDVLAEMKAETHP 574
Query: 311 VERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGL 370
++ D ++ ++ AN G+ +A ++ + + + +++C+ G W+ L
Sbjct: 575 IDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFAL 634
Query: 371 MYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMP---MKPDAKIWGSLLSS 427
+D MK+ ++ + LVD+ G AG LD+A I+++ +K + SL+ +
Sbjct: 635 SIYDDMKKKGVKPDEV-FFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGA 693
Query: 428 CRTYSNLEIA 437
C N + A
Sbjct: 694 CSNAKNWKKA 703
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.9 bits (118), Expect = 5e-08
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 8/49 (16%)
Query: 182 DIVAWNNLISGYARLGQMKKARMLFDKM------PYTTIVSWTAMISGY 224
D+V +N LI GY + G++++A LF++M P + +++ +I G
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKP--NVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 46.2 bits (111), Expect = 5e-07
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 284 TVICNALIEMYIKCGCINQASQLFDQMVER----DVVSWSTVIGGLAN 327
V N LI+ Y K G + +A +LF++M +R +V ++S +I GL
Sbjct: 3 VVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 1e-06
Identities = 49/243 (20%), Positives = 106/243 (43%), Gaps = 20/243 (8%)
Query: 17 FVPILQSCENLIEL---KKIHTQILKYLLSQSNFLVTKMIDVCNSGGDLAYASLLFKQVK 73
+ L +C + L K+IH +L+ + FL ++D+ G + YA F
Sbjct: 492 LIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF-NSH 550
Query: 74 EPNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSC--AGLL 131
E +V +N ++ Y + +A+ L+ +M+ S + PD+ T ++ +C +G++
Sbjct: 551 EKDVVSWNILLTGYVAHGKGSMAVELFNRMVE-----SGVNPDEVTFISLLCACSRSGMV 605
Query: 132 CPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEM-TDRDIVAWNNLI 190
L + H+ K+ + + ++DL G+ +L EA+ +M D W L+
Sbjct: 606 TQGL-EYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALL 664
Query: 191 SG-----YARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGI 245
+ + LG++ + ++ ++ + + + Y G + E V + M+ G+
Sbjct: 665 NACRIHRHVELGELAAQHIF--ELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGL 722
Query: 246 EPD 248
D
Sbjct: 723 TVD 725
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 1e-06
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 214 IVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQ 261
+V++ +I GY G EAL +F +M+ GI+P+ + ++ +
Sbjct: 3 VVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 2e-06
Identities = 75/354 (21%), Positives = 136/354 (38%), Gaps = 78/354 (22%)
Query: 52 MIDVCNSGGDL-----AYASLLFKQVKEPNVFLYNAMIRAYTNNHLYGLAINLYKQMLRD 106
+ID C G + AY + K VK P+ ++NA+I A + A ++ +M +
Sbjct: 513 LIDGCARAGQVAKAFGAYGIMRSKNVK-PDRVVFNALISACGQSGAVDRAFDVLAEMKAE 571
Query: 107 PRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCD 166
I PD T+ ++K+CA K+++ + ++ +K ++ +
Sbjct: 572 THP---IDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKG 628
Query: 167 ELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTH 226
+ A ++++M + + K + F +A++ H
Sbjct: 629 DWDFALSIYDDMKKKGV----------------KPDEVFF-----------SALVDVAGH 661
Query: 227 IGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLG----SLELGEWIHMYCDKNHLLR 282
G +A ++ + + GI+ +S S++ AC+ +LEL E I K+ LR
Sbjct: 662 AGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI-----KSIKLR 716
Query: 283 RTV-ICNALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEM 341
TV NALI + + +QL KA+ + EM
Sbjct: 717 PTVSTMNALIT------ALCEGNQL-------------------------PKALEVLSEM 745
Query: 342 QRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDL 395
+RL + PN IT+ LL A + GL K D I+ + C+ L
Sbjct: 746 KRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGL 798
|
Length = 1060 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 2e-05
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 215 VSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDE 249
V++ +I G G EAL++F++M+ GIEPD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 4e-05
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 184 VAWNNLISGYARLGQMKKARMLFDKM 209
V +N+LISGY + G++++A LF +M
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEM 26
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 1e-04
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 316 VSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPND 350
V+++T+I GL G+ +A+ LF EM+ + P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 2e-04
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 215 VSWTAMISGYTHIGSYAEALDVFRQMQMVGI 245
V++ ++ISGY G EAL++F++M+ G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 5e-04
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Query: 75 PNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCA 128
P+V YN +I Y A+ L+ +M + I P+ +T +I
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKK-----RGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.9 bits (87), Expect = 6e-04
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 309 QMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQ 342
+ ++ DVV+++T+I GL G+ +A+ L EM+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 7e-04
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 152 SITENALLDLYGKCDELIEAHKVFEEMTDR----DIVAWNNLISGYAR 195
+T N L+D Y K ++ EA K+F EM R ++ ++ LI G +
Sbjct: 3 VVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 7e-04
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 316 VSWSTVIGGLANHGKAHKAIHLFHEMQRLKV 346
V+++++I G GK +A+ LF EM+ V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.001
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 182 DIVAWNNLISGYARLGQMKKARMLFDKMP 210
D+V +N LI G R G++ +A L D+M
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 184 VAWNNLISGYARLGQMKKARMLFDKM 209
V +N LI G + G++++A LF +M
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEM 26
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 34.7 bits (81), Expect = 0.004
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 285 VICNALIEMYIKCGCINQASQLFDQMVERDVV 316
V N LI+ K G + +A +LF +M ER +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIE 32
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 541 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.93 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.93 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.92 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.92 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.91 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.88 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.88 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.88 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.88 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.88 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.84 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.84 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.83 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.83 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.79 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.75 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.71 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.71 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.7 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.7 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.7 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.69 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.69 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.68 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.67 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.67 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.66 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.65 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.65 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.64 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.64 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.64 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.63 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.61 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.61 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.61 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.57 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.52 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.49 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.47 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.47 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.45 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.44 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.42 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.42 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.41 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.38 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.38 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.38 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.37 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.36 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.36 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.35 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.33 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.3 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.3 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.29 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.29 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.29 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.28 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.26 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.26 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.26 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.25 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.24 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.24 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.24 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.2 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.18 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.17 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.17 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.13 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.11 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.11 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.08 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.08 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.07 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.07 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.06 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.05 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.98 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.98 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.98 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.97 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.96 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.95 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.95 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.94 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.94 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.93 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.93 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.91 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.89 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.88 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.88 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.86 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.86 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.85 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.83 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.79 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.79 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.78 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.76 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.71 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.71 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.69 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.65 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.64 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.63 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.61 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.58 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.57 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.57 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.54 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.53 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.52 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.52 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.5 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.46 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.44 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.4 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.39 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.39 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.38 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.36 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.36 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.36 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.33 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.31 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.28 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.26 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.24 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.21 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.21 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.15 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.14 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.12 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.12 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.08 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.08 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.07 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.07 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.06 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.05 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.03 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.0 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.0 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.99 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.96 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.96 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.95 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.94 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.92 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.88 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.85 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.83 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.82 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.81 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.8 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.74 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.73 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.71 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.7 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.68 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.68 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.65 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.61 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.55 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.53 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.52 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.52 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.51 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.51 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.5 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.5 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.48 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.47 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.47 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.45 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.44 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.43 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.42 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.41 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.38 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.37 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.36 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.36 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.33 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.31 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.31 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.3 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.29 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.27 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.22 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.19 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.17 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.12 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.11 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.1 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.07 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 97.03 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.03 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.99 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.99 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.98 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.98 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.95 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.94 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.91 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.91 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.9 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.89 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.84 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.7 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.65 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.64 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.64 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.57 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.56 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.52 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.43 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.42 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.41 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.4 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.33 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.3 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.25 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.22 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.09 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.95 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.9 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 95.74 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.7 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.69 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.65 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 95.63 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.62 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.53 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.52 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 95.47 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.46 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.4 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.34 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.29 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.26 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 95.19 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.14 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 95.13 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 95.08 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.07 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.04 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.8 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.71 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.68 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.62 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.61 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.57 | |
| PRK09687 | 280 | putative lyase; Provisional | 94.5 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.45 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 94.35 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.3 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.06 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 93.8 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 93.62 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.61 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.39 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.39 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.3 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.22 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.18 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 92.92 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 92.87 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 92.79 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 92.75 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 92.73 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 92.73 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.73 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.34 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.31 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 92.28 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 92.25 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 92.19 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 92.14 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.12 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.12 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 91.99 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 91.72 | |
| PRK09687 | 280 | putative lyase; Provisional | 91.59 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 91.55 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 91.23 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 90.61 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 90.25 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 90.06 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 90.06 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 89.54 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 89.42 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 89.31 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 89.2 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 89.0 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 88.82 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 88.74 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 88.67 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 88.62 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 88.55 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 88.37 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 88.31 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 88.1 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 88.08 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 87.94 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 87.73 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 87.65 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 87.55 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 87.54 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 87.47 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 87.42 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 87.27 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 87.16 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 87.02 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 86.97 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 86.6 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 86.58 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 86.49 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 86.43 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 86.24 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 86.12 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 85.81 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 85.45 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 85.31 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 85.12 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 85.06 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 85.06 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 84.84 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 84.78 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 84.31 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 84.19 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 82.6 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 82.48 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 82.3 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 81.83 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 81.82 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 81.75 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 81.42 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 81.05 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 80.9 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 80.7 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 80.48 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-77 Score=631.67 Aligned_cols=525 Identities=33% Similarity=0.617 Sum_probs=494.1
Q ss_pred CcchhhhcCCCCChhhHHHHHHhccChh---HHHHHHHHHHHhccCCchhHHHHHHHHHHcCCChHHHHHHHhcCCCCCc
Q 048358 1 MAARIGALSIKELEDRFVPILQSCENLI---ELKKIHTQILKYLLSQSNFLVTKMIDVCNSGGDLAYASLLFKQVKEPNV 77 (541)
Q Consensus 1 ~~~~m~~~g~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 77 (541)
+|.+|++.|++||..||..++++|+..+ .+.+++..+++.|+.||+.++|+|+.+|+++|++++|.++|++|+++|.
T Consensus 174 ~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~ 253 (857)
T PLN03077 174 LYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDC 253 (857)
T ss_pred HHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCc
Confidence 3678999999999999999999998655 4589999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHH
Q 048358 78 FLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENA 157 (541)
Q Consensus 78 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 157 (541)
.+||.+|.+|++.|++++|+++|++|.+.|+ .||..||+.++.+|++.|+.+.+.+++..|.+.|+.||..+|+.
T Consensus 254 ~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~-----~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~ 328 (857)
T PLN03077 254 ISWNAMISGYFENGECLEGLELFFTMRELSV-----DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNS 328 (857)
T ss_pred chhHHHHHHHHhCCCHHHHHHHHHHHHHcCC-----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHH
Confidence 9999999999999999999999999999998 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhc-----------------------------------------
Q 048358 158 LLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARL----------------------------------------- 196 (541)
Q Consensus 158 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~----------------------------------------- 196 (541)
|+.+|++.|++++|.++|++|..||..+|+.++.+|.+.
T Consensus 329 Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a 408 (857)
T PLN03077 329 LIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVG 408 (857)
T ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHH
Confidence 999999999999999999999888877777777777764
Q ss_pred -----------------------------CCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 048358 197 -----------------------------GQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEP 247 (541)
Q Consensus 197 -----------------------------~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 247 (541)
|++++|.++|++|.++|+.+|+.++.+|++.|+.++|+.+|++|.. +++|
T Consensus 409 ~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~p 487 (857)
T PLN03077 409 VKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKP 487 (857)
T ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCC
Confidence 4555555555555566777788888888888888888888888875 5899
Q ss_pred ChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHh
Q 048358 248 DEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLAN 327 (541)
Q Consensus 248 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 327 (541)
|..||+.++.+|++.|+++.+.+++..+.+.|+.++..+++.|+++|++.|++++|.++|+.+ .+|..+||++|.+|++
T Consensus 488 d~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~ 566 (857)
T PLN03077 488 NSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVA 566 (857)
T ss_pred CHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHH
Q 048358 328 HGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALN 407 (541)
Q Consensus 328 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 407 (541)
.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+|+.|+..+|+.++.+|++.|++++|.+
T Consensus 567 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~ 646 (857)
T PLN03077 567 HGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYN 646 (857)
T ss_pred cCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999778999999999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCC
Q 048358 408 IIEEMPMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTP 487 (541)
Q Consensus 408 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 487 (541)
++++|+++||..+|..|+.+|...|+.+.+....+++.+++|+++..|..|++.|.+.|+|++|.++.+.|++.|+.+.|
T Consensus 647 ~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~ 726 (857)
T PLN03077 647 FINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDP 726 (857)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCc
Q 048358 488 GCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVI 532 (541)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~ 532 (541)
|+|||++++.++.|..++..||+..+||..|..+..++++.....
T Consensus 727 g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~ 771 (857)
T PLN03077 727 GCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAG 771 (857)
T ss_pred CccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCC
Confidence 999999999999999999999999999999999999998765543
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-73 Score=590.08 Aligned_cols=487 Identities=29% Similarity=0.537 Sum_probs=398.5
Q ss_pred CCCChhhHHHHHHhccChh---HHHHHHHHHHHhccCCchhHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHH
Q 048358 10 IKELEDRFVPILQSCENLI---ELKKIHTQILKYLLSQSNFLVTKMIDVCNSGGDLAYASLLFKQVKEPNVFLYNAMIRA 86 (541)
Q Consensus 10 ~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~ 86 (541)
..|+..||..++.+|+..+ .+.+++..+.+.|+.||+.+||.++.+|+++|+++.|.++|++|++||..+||.++.+
T Consensus 119 ~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~ 198 (697)
T PLN03081 119 FTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGG 198 (697)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHH
Confidence 4455555555555443322 2345555555555555555555555555555555555555555555555555555555
Q ss_pred HHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCC
Q 048358 87 YTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCD 166 (541)
Q Consensus 87 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 166 (541)
|++.|++++|+++|++|.+.|+ .|+..||..++.+|+..|..+.+.+++..+.+.|+.||..+++.|
T Consensus 199 ~~~~g~~~~A~~lf~~M~~~g~-----~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~L-------- 265 (697)
T PLN03081 199 LVDAGNYREAFALFREMWEDGS-----DAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCAL-------- 265 (697)
T ss_pred HHHCcCHHHHHHHHHHHHHhCC-----CCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHH--------
Confidence 5555555555555555555444 455555555555555555555555555555555555555555554
Q ss_pred ChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 048358 167 ELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIE 246 (541)
Q Consensus 167 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 246 (541)
+.+|++.|++++|.++|+.|.++|+++||.++.+|++.|++++|+++|++|.+.|+.
T Consensus 266 -----------------------i~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 266 -----------------------IDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred -----------------------HHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 455555555555555555566778888999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHH
Q 048358 247 PDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLA 326 (541)
Q Consensus 247 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 326 (541)
||..||+.++.+|++.|+++.|.+++..|.+.|++||..+|+.|+++|++.|++++|.++|++|.++|..+||+||.+|+
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~ 402 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYG 402 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 048358 327 NHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQAL 406 (541)
Q Consensus 327 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 406 (541)
+.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+..|+.|+..+|+.++++|++.|++++|.
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~ 482 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY 482 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999987899999999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccC
Q 048358 407 NIIEEMPMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKT 486 (541)
Q Consensus 407 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 486 (541)
+++++|+..|+..+|+.++.+|...|+++.|..+++++.+.+|++..+|..|+++|.+.|+|++|.++++.|++.|+.+.
T Consensus 483 ~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 483 AMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMH 562 (697)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCc
Q 048358 487 PGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVI 532 (541)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~ 532 (541)
||+||+++++.++.|.+++..||+..++|..|..+..++++.....
T Consensus 563 ~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~ 608 (697)
T PLN03081 563 PACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVA 608 (697)
T ss_pred CCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999999998765443
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-67 Score=554.21 Aligned_cols=503 Identities=30% Similarity=0.501 Sum_probs=460.1
Q ss_pred CcchhhhcCCCCChhhHHHHHHhccC---hhHHHHHHHHHHHhccCCchhHHHHHHHHHHcCCChHHHHHHHhcCCCCCc
Q 048358 1 MAARIGALSIKELEDRFVPILQSCEN---LIELKKIHTQILKYLLSQSNFLVTKMIDVCNSGGDLAYASLLFKQVKEPNV 77 (541)
Q Consensus 1 ~~~~m~~~g~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 77 (541)
+|..|.+.|++|+..+|..+++.|.. +..+.+++..+.+.+..++..++|+++..|++.|+++.|.++|++|++||.
T Consensus 73 l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~ 152 (857)
T PLN03077 73 LLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDL 152 (857)
T ss_pred HHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCe
Confidence 36789999999999999999999864 445689999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHH
Q 048358 78 FLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENA 157 (541)
Q Consensus 78 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 157 (541)
.+||.+|.+|++.|++++|+++|++|...|+ .||..||+.++++|+..+++..+.+++..+.+.|+.|+..+++.
T Consensus 153 ~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~-----~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ 227 (857)
T PLN03077 153 FSWNVLVGGYAKAGYFDEALCLYHRMLWAGV-----RPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNA 227 (857)
T ss_pred eEHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-----CCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhH
Confidence 9999999999999999999999999999998 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHh------------------------------------------
Q 048358 158 LLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYAR------------------------------------------ 195 (541)
Q Consensus 158 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~------------------------------------------ 195 (541)
|+.+|++.|++++|.++|++|..+|..+||++|.+|++
T Consensus 228 Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a 307 (857)
T PLN03077 228 LITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLG 307 (857)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHH
Confidence 99999999999999999999987766666666655554
Q ss_pred ----------------------------cCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 048358 196 ----------------------------LGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEP 247 (541)
Q Consensus 196 ----------------------------~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 247 (541)
.|++++|.++|++|..+|+.+||.++.+|++.|++++|+++|++|.+.|+.|
T Consensus 308 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~P 387 (857)
T PLN03077 308 REMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSP 387 (857)
T ss_pred HHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC
Confidence 6777777777888888899999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHh
Q 048358 248 DEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLAN 327 (541)
Q Consensus 248 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 327 (541)
|..||+.++.+|++.|+++.+.+++..+.+.|+.|+..+|+.|+++|++.|++++|.++|++|.++|..+|+.++.+|++
T Consensus 388 d~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~ 467 (857)
T PLN03077 388 DEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRL 467 (857)
T ss_pred CceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHH
Q 048358 328 HGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALN 407 (541)
Q Consensus 328 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 407 (541)
.|+.++|+.+|++|.. +++||..||+.++.+|++.|+++.+.+++..+.+. |+.++..+++.|++.|.++|++++|.+
T Consensus 468 ~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~ 545 (857)
T PLN03077 468 NNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWN 545 (857)
T ss_pred CCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHH
Confidence 9999999999999986 58999999999999999999999999999999985 899999999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccC-CCCcchHHHHHHHHHhcCCHHHHHHHHHHhh-hCCCcc
Q 048358 408 IIEEMPMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLE-PEDTGNYVLLSNIYAKHGRWEDVSRMRKLIR-SKSMKK 485 (541)
Q Consensus 408 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~~~ 485 (541)
+|+.+ .||..+|+.++.+|.+.|+.++|.++|++|.+.+ .||..+|..++.+|.+.|++++|.++|+.|. +.|+.|
T Consensus 546 ~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P 623 (857)
T PLN03077 546 QFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP 623 (857)
T ss_pred HHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC
Confidence 99999 7999999999999999999999999999999866 5568899999999999999999999999998 556655
Q ss_pred CCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCcccccc
Q 048358 486 TPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMYE 537 (541)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 537 (541)
+ ...|..|..++.+.|+.++|.+.+++
T Consensus 624 ~-------------------------~~~y~~lv~~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 624 N-------------------------LKHYACVVDLLGRAGKLTEAYNFINK 650 (857)
T ss_pred c-------------------------hHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3 24455566666666666666555544
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-62 Score=509.24 Aligned_cols=515 Identities=18% Similarity=0.234 Sum_probs=447.1
Q ss_pred CcchhhhcCCC-CChhhHHHHHHhccC---hhHHHHHHHHHHHhccCCchhHHHHHHHHHHcCCChHHHHHHHhcCCC--
Q 048358 1 MAARIGALSIK-ELEDRFVPILQSCEN---LIELKKIHTQILKYLLSQSNFLVTKMIDVCNSGGDLAYASLLFKQVKE-- 74 (541)
Q Consensus 1 ~~~~m~~~g~~-~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-- 74 (541)
+|..|...|+. |+..++..++..|.. ..++..++..|. .||..+|+.++.+|++.|+++.|.++|+.|.+
T Consensus 392 Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~----~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~G 467 (1060)
T PLN03218 392 LLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR----NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAG 467 (1060)
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC----CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC
Confidence 36788898964 566666777777754 445556666554 39999999999999999999999999999874
Q ss_pred --CCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCch
Q 048358 75 --PNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHS 152 (541)
Q Consensus 75 --~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 152 (541)
||..+|+.+|.+|++.|++++|.++|++|.+.|+ .||..+|+.+|.+|++.|++++|.++|+.|.+.|+.||.
T Consensus 468 l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv-----~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~ 542 (1060)
T PLN03218 468 LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGV-----EANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDR 542 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCH
Confidence 8999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHhhcC------CCChhhHHHHHHHHHhcCCHHHHHHHHhcCCC----CCcchHHHHHH
Q 048358 153 ITENALLDLYGKCDELIEAHKVFEEMT------DRDIVAWNNLISGYARLGQMKKARMLFDKMPY----TTIVSWTAMIS 222 (541)
Q Consensus 153 ~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~ 222 (541)
.+|+.++.+|++.|++++|.++|++|. .||..+|++++.+|++.|++++|.++|+.|.+ +++.+|+.+|.
T Consensus 543 vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ 622 (1060)
T PLN03218 543 VVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVN 622 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHH
Confidence 999999999999999999999999995 38999999999999999999999999999974 56689999999
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHH
Q 048358 223 GYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQ 302 (541)
Q Consensus 223 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 302 (541)
+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+.|+.|+..+|+.|+.+|++.|++++
T Consensus 623 ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~ee 702 (1060)
T PLN03218 623 SCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKK 702 (1060)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcc----CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 048358 303 ASQLFDQM----VERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKR 378 (541)
Q Consensus 303 A~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 378 (541)
|.++|++| ..||..+|+.||.+|++.|++++|.++|++|...|+.||..||+.++.+|++.|+++.|.++|+.|.+
T Consensus 703 A~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k 782 (1060)
T PLN03218 703 ALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKE 782 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999 46899999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hcCCCCcHhHHHHHHHHHHh----c-------------------CCHHHHHHHHHhC---CCCCCHHHHHHHHHHHhhcC
Q 048358 379 DHHIEHKIEHYGCLVDLLGR----A-------------------GRLDQALNIIEEM---PMKPDAKIWGSLLSSCRTYS 432 (541)
Q Consensus 379 ~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~~ 432 (541)
. |+.|+..+|+.++..|.+ + +..++|..+|++| ++.||..||..++.++...+
T Consensus 783 ~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~ 861 (1060)
T PLN03218 783 D-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPH 861 (1060)
T ss_pred c-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccc
Confidence 5 899999999999876432 1 1246799999999 89999999999998888889
Q ss_pred CHHHHHHHHHHHhcc-CCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCCh
Q 048358 433 NLEIAVIAMEHLLVL-EPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFL 511 (541)
Q Consensus 433 ~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 511 (541)
..+.+..+++.+... .+++..+|+.|++++.+. .++|..++++|...|+.|........+.-.++ ++-|..
T Consensus 862 ~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~~~~~~~~~d~~------~~~~~a 933 (1060)
T PLN03218 862 DATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVSFKKSPIVIDAE------ELPVFA 933 (1060)
T ss_pred cHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcccccCceEEEcc------cCcchh
Confidence 999999998887643 366788999999988432 36899999999999998874321101111111 223333
Q ss_pred h--HHHHHHHHHHHHHhcccCCcc
Q 048358 512 K--DIFWLLELLALHQDRAKDVID 533 (541)
Q Consensus 512 ~--~~~~~l~~~~~~~~~~~~a~~ 533 (541)
+ ..+.-|..++.++...++...
T Consensus 934 a~~~l~~wl~~~~~~~~~g~~lp~ 957 (1060)
T PLN03218 934 AEVYLLTILKGLKHRLAAGAKLPN 957 (1060)
T ss_pred HHHHHHHHHHHHHHHHhccCcCCc
Confidence 3 335567777777765555443
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-61 Score=499.38 Aligned_cols=469 Identities=15% Similarity=0.199 Sum_probs=437.0
Q ss_pred CChhhHHHHHHhc---cChhHHHHHHHHHHHhcc-CCchhHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHH
Q 048358 12 ELEDRFVPILQSC---ENLIELKKIHTQILKYLL-SQSNFLVTKMIDVCNSGGDLAYASLLFKQVKEPNVFLYNAMIRAY 87 (541)
Q Consensus 12 ~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~ 87 (541)
++...+..++..+ ++++++.++++.|.+.|+ +++..+++.++..|.+.|.+++|..+|+.|..||..+|+.++.+|
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVC 447 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3444555666655 688889999999999995 578888899999999999999999999999999999999999999
Q ss_pred HcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCC
Q 048358 88 TNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDE 167 (541)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 167 (541)
++.|++++|.++|+.|.+.|+ .||..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.++.+|++.|+
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl-----~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGL-----KADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 999999999999999999998 999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhcCC----CChhhHHHHHHHHHhcCCHHHHHHHHhcCC------CCCcchHHHHHHHHHhcCChHHHHHHH
Q 048358 168 LIEAHKVFEEMTD----RDIVAWNNLISGYARLGQMKKARMLFDKMP------YTTIVSWTAMISGYTHIGSYAEALDVF 237 (541)
Q Consensus 168 ~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~ 237 (541)
+++|.++|++|.+ ||..+|+.+|.+|++.|++++|.++|++|. .||..+|++++.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999964 899999999999999999999999999994 578899999999999999999999999
Q ss_pred HHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccC----CC
Q 048358 238 RQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMV----ER 313 (541)
Q Consensus 238 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~ 313 (541)
++|.+.|+.|+..+|+.++.+|++.|++++|..+|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999994 47
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHH
Q 048358 314 DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLV 393 (541)
Q Consensus 314 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 393 (541)
|..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|... |+.||..+|+.++
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~-Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL-GLCPNTITYSILL 761 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999875 8999999999999
Q ss_pred HHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHhh-----------------------cCCHHHHHHHHHHHhcc
Q 048358 394 DLLGRAGRLDQALNIIEEM---PMKPDAKIWGSLLSSCRT-----------------------YSNLEIAVIAMEHLLVL 447 (541)
Q Consensus 394 ~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~~~~ 447 (541)
.+|.+.|++++|.++++.| ++.||..+|+.++..|.+ .+..+.|..+|++|.+.
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~ 841 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA 841 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC
Confidence 9999999999999999999 789999999999876542 12346799999999987
Q ss_pred C-CCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccC
Q 048358 448 E-PEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKT 486 (541)
Q Consensus 448 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 486 (541)
+ .|+..+|..++.++...+.++.+..+++.|...+..+.
T Consensus 842 Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~ 881 (1060)
T PLN03218 842 GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQK 881 (1060)
T ss_pred CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcc
Confidence 7 56788999999888889999999999998877765443
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-55 Score=453.77 Aligned_cols=445 Identities=18% Similarity=0.224 Sum_probs=326.8
Q ss_pred CCcchHHHHHHHHHcCCChhHHHHHHHHhhhCC-CCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchh
Q 048358 75 PNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDP-RTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSI 153 (541)
Q Consensus 75 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 153 (541)
.+..+|+.++.++.+.|++++|+++|+.|...+ . .||..+|+.++.+|.+.++.+.+.+++..|.+.|+.||..
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~-----~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~ 159 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPF-----TLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQY 159 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC-----CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchH
Confidence 566677777777777777777777777777643 3 6777777777777777777777777777777777777777
Q ss_pred hHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCC----CCCcchHHHHHHHHHhcCC
Q 048358 154 TENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMP----YTTIVSWTAMISGYTHIGS 229 (541)
Q Consensus 154 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~ 229 (541)
+|+.++.+|++.|++++|.++|++|.+||..+|+.++.+|++.|++++|.++|++|. .|+..+|+.++.+|.+.|.
T Consensus 160 ~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 160 MMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 777777777777777777777777777777777777777777777777777777774 4566777777777777777
Q ss_pred hHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHc
Q 048358 230 YAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQ 309 (541)
Q Consensus 230 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 309 (541)
.+.+.+++..+.+.|+.||..+|+.++.+|++.|+++.|.++|+.|. ++|..+|+.++.+|++.|+.++|.++|++
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~ 315 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYE 315 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777764 34677777777777777777777777777
Q ss_pred c----CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCc
Q 048358 310 M----VERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHK 385 (541)
Q Consensus 310 ~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 385 (541)
| ..||..||++++.+|++.|++++|.+++..|.+.|++||..+|+.|+.+|++.|++++|.++|++|.+ ||
T Consensus 316 M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-----~d 390 (697)
T PLN03081 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR-----KN 390 (697)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC-----CC
Confidence 7 45677777777777777777777777777777777777777777777777777777777777777753 56
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccC--CCCcchHHHHHH
Q 048358 386 IEHYGCLVDLLGRAGRLDQALNIIEEM---PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLE--PEDTGNYVLLSN 460 (541)
Q Consensus 386 ~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~l~~ 460 (541)
..+|+.||.+|++.|+.++|.++|++| ++.||..||+.++.+|.+.|++++|.++|+.|.+.. .++..+|+++++
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~ 470 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence 777777777777777777777777777 677777777777777777777777777777776532 345667777777
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCccCCceeEE--------EEcCEEEE--EEeCCCCCCChhHHHHHHHHHHHHHhcccC
Q 048358 461 IYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLI--------EVNNEVQE--FVSGDDTKPFLKDIFWLLELLALHQDRAKD 530 (541)
Q Consensus 461 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~--------~~~~~~~~--~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 530 (541)
+|++.|++++|.+++++|.. .|+... |- +.+...+. +....+..|++...|..|.++|.+.|+.++
T Consensus 471 ~l~r~G~~~eA~~~~~~~~~---~p~~~~-~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~ 546 (697)
T PLN03081 471 LLGREGLLDEAYAMIRRAPF---KPTVNM-WAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAE 546 (697)
T ss_pred HHHhcCCHHHHHHHHHHCCC---CCCHHH-HHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHH
Confidence 77777777777777776632 222110 10 11101110 111125789888899999999999999999
Q ss_pred Ccccccc
Q 048358 531 VIDIMYE 537 (541)
Q Consensus 531 a~~~~~~ 537 (541)
|.+.+++
T Consensus 547 A~~v~~~ 553 (697)
T PLN03081 547 AAKVVET 553 (697)
T ss_pred HHHHHHH
Confidence 9887654
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-31 Score=287.60 Aligned_cols=505 Identities=12% Similarity=0.045 Sum_probs=308.4
Q ss_pred HHhccChhHHHHHHHHHHHhccCCchhHHHHHHHHHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHcCCChhHHH
Q 048358 21 LQSCENLIELKKIHTQILKYLLSQSNFLVTKMIDVCNSGGDLAYASLLFKQVKE---PNVFLYNAMIRAYTNNHLYGLAI 97 (541)
Q Consensus 21 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~A~ 97 (541)
+...+..+.+...++.+.+.. +.+...+..+...+...|++++|.+.|+.+.+ .+...+..++..+.+.|++++|.
T Consensus 373 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 451 (899)
T TIGR02917 373 YLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKAL 451 (899)
T ss_pred HHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHH
Confidence 334456666666666666543 33556666777777777777777777776654 12334455666677777777777
Q ss_pred HHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhh
Q 048358 98 NLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEE 177 (541)
Q Consensus 98 ~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 177 (541)
.+++.+.... +++..++..+...+...|+++.|...++++.+.. +.+...+..+...+...|++++|.+.|++
T Consensus 452 ~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 524 (899)
T TIGR02917 452 AAAKKLEKKQ------PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEK 524 (899)
T ss_pred HHHHHHHHhC------CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7777776653 4556667777777777777777777777776654 33445556666677777777777777776
Q ss_pred cCC---CChhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHH
Q 048358 178 MTD---RDIVAWNNLISGYARLGQMKKARMLFDKMPY---TTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEIS 251 (541)
Q Consensus 178 ~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 251 (541)
+.+ .+..++..+...+.+.|+.++|...|+++.. .+...+..++..+...|++++|..+++++.... +.+..+
T Consensus 525 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 603 (899)
T TIGR02917 525 VLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEA 603 (899)
T ss_pred HHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHH
Confidence 654 2445666666666677777777777666532 233455566666666677777777666666542 445556
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHhc
Q 048358 252 IVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE---RDVVSWSTVIGGLANH 328 (541)
Q Consensus 252 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~ 328 (541)
|..+...+...|+++.|...++.+.+.. +.+...+..++.+|...|++++|...|+++.+ .+..++..++..+...
T Consensus 604 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 682 (899)
T TIGR02917 604 WLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAA 682 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Confidence 6666666666667776666666666543 23445566666666666666666666666533 2345566666666666
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHH
Q 048358 329 GKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNI 408 (541)
Q Consensus 329 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 408 (541)
|++++|..+++.+.+.+ +++...+..+...+...|++++|...|+.+... .|+..++..++..+.+.|++++|.+.
T Consensus 683 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~ 758 (899)
T TIGR02917 683 KRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---APSSQNAIKLHRALLASGNTAEAVKT 758 (899)
T ss_pred CCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHCCCHHHHHHH
Confidence 66666666666666554 445555555666666666666666666666543 23334455556666666666666666
Q ss_pred HHhC-CCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccC
Q 048358 409 IEEM-PMK-PDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKT 486 (541)
Q Consensus 409 ~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 486 (541)
++++ ... .+...+..+...|...|++++|...|+++++..|+++.++..++.++...|+ ++|+.+++++.+......
T Consensus 759 ~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~ 837 (899)
T TIGR02917 759 LEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIP 837 (899)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCc
Confidence 6555 222 2445555555556666666666666666666666666666666666666666 556666665554321111
Q ss_pred C-----ceeEE---EEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCcccccccCC
Q 048358 487 P-----GCSLI---EVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMYEDIG 540 (541)
Q Consensus 487 ~-----~~~~~---~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~i~ 540 (541)
. +.... ....++..+....+..|.++.++..++.++...|+.++|.+.++++++
T Consensus 838 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 838 AILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 0 00000 001111112222245788889999999999999999999998887653
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-31 Score=284.76 Aligned_cols=502 Identities=15% Similarity=0.077 Sum_probs=370.6
Q ss_pred ChhHHHHHHHHHHHhccCCchhHHHHHHHHHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHcCCChhHHHHHHHH
Q 048358 26 NLIELKKIHTQILKYLLSQSNFLVTKMIDVCNSGGDLAYASLLFKQVKE---PNVFLYNAMIRAYTNNHLYGLAINLYKQ 102 (541)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 102 (541)
....+...+..+.+.. +.++..+..+...+.+.|++++|.++|+++.+ .+...|..+...+...|++++|+..|+.
T Consensus 344 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 422 (899)
T TIGR02917 344 RVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLET 422 (899)
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 3333444444443332 23444555555556666666666666655443 2333445555555566666666666666
Q ss_pred hhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCC--
Q 048358 103 MLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTD-- 180 (541)
Q Consensus 103 m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 180 (541)
+.+.. +........++..+.+.|+++.|..+++.+.... +.+..++..+..++...|++++|.+.|+++.+
T Consensus 423 a~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 495 (899)
T TIGR02917 423 AAQLD------PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE 495 (899)
T ss_pred HHhhC------CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Confidence 55543 2233444455556666666666666666666542 44566777777788888888888888877654
Q ss_pred -CChhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHH
Q 048358 181 -RDIVAWNNLISGYARLGQMKKARMLFDKMPY---TTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVL 256 (541)
Q Consensus 181 -~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 256 (541)
.+...+..+...+...|++++|.+.|+.+.. .+..++..+...+.+.|++++|...++++...+ +.+...+..+.
T Consensus 496 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 574 (899)
T TIGR02917 496 PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALA 574 (899)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHH
Confidence 3445667777778888888888888877642 355677778888888888888888888887654 44566677788
Q ss_pred HHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHhcCChHH
Q 048358 257 PACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE---RDVVSWSTVIGGLANHGKAHK 333 (541)
Q Consensus 257 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 333 (541)
..+...|+++.|..+++.+.+.. +.+..+|..++.+|...|++++|...|+.+.+ .+...+..+..++...|++++
T Consensus 575 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 653 (899)
T TIGR02917 575 QYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAK 653 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHH
Confidence 88888899999998888887654 45677888899999999999999999988743 356678888889999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 048358 334 AIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM- 412 (541)
Q Consensus 334 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 412 (541)
|..+|+++.+.. +.+..++..++..+...|++++|.++++.+.... +++...+..+...+.+.|++++|.+.|+.+
T Consensus 654 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 730 (899)
T TIGR02917 654 AITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH--PKAALGFELEGDLYLRQKDYPAAIQAYRKAL 730 (899)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cCChHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999988865 5667888889999999999999999999998753 567777888999999999999999999988
Q ss_pred CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCC---ce
Q 048358 413 PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTP---GC 489 (541)
Q Consensus 413 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~ 489 (541)
...|+..++..+..++.+.|++++|.+.++++++..|+++..+..++.+|...|++++|.+.++++.+....... ..
T Consensus 731 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 810 (899)
T TIGR02917 731 KRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNL 810 (899)
T ss_pred hhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 566777888889999999999999999999999999999999999999999999999999999999887543221 11
Q ss_pred eEE--EEcC--EEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCcccccccCC
Q 048358 490 SLI--EVNN--EVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMYEDIG 540 (541)
Q Consensus 490 ~~~--~~~~--~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~i~ 540 (541)
.|+ ..+. ++..+....+..|+++..+..++.++..+|+.++|...++++|+
T Consensus 811 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 865 (899)
T TIGR02917 811 AWLYLELKDPRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVN 865 (899)
T ss_pred HHHHHhcCcHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 111 1111 11112222367899999999999999999999999999998875
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6e-24 Score=231.04 Aligned_cols=500 Identities=12% Similarity=0.057 Sum_probs=340.3
Q ss_pred ChhHHHHHHHHHHHhccCCchhHHHHHHHHHHcCCChHHHHHHHhcCCC--CCcchH-----------------HHHHHH
Q 048358 26 NLIELKKIHTQILKYLLSQSNFLVTKMIDVCNSGGDLAYASLLFKQVKE--PNVFLY-----------------NAMIRA 86 (541)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~-----------------~~ll~~ 86 (541)
+.+.+++.+..+.... +.++.++..++..+.+.|+.++|.+.++++.+ |+...+ ....+.
T Consensus 43 ~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~l 121 (1157)
T PRK11447 43 REDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARL 121 (1157)
T ss_pred ChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHH
Confidence 3444556666555543 44788888899999999999999999999876 433222 223446
Q ss_pred HHcCCChhHHHHHHHHhhhCCCCCCCCCCCccc-HHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcC
Q 048358 87 YTNNHLYGLAINLYKQMLRDPRTGSLILPDKFT-LPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKC 165 (541)
Q Consensus 87 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 165 (541)
+.+.|++++|+..|+.+.+.+ +|+... ...........|+.++|.+.++.+.+.. +.+...+..+...+...
T Consensus 122 l~~~g~~~eA~~~~~~~l~~~------p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~ 194 (1157)
T PRK11447 122 LATTGRTEEALASYDKLFNGA------PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSS 194 (1157)
T ss_pred HHhCCCHHHHHHHHHHHccCC------CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHcc
Confidence 788999999999999998764 444321 1122222335689999999999999875 44677788889999999
Q ss_pred CChHHHHHHHhhcCCCCh-----------------------hhHH----------------------------------H
Q 048358 166 DELIEAHKVFEEMTDRDI-----------------------VAWN----------------------------------N 188 (541)
Q Consensus 166 g~~~~A~~~~~~~~~~~~-----------------------~~~~----------------------------------~ 188 (541)
|+.++|...++++..... ..+. .
T Consensus 195 g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~ 274 (1157)
T PRK11447 195 GRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARA 274 (1157)
T ss_pred CCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHH
Confidence 999999999887643100 0000 1
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHH------------
Q 048358 189 LISGYARLGQMKKARMLFDKMPY---TTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEP-DEISI------------ 252 (541)
Q Consensus 189 l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~------------ 252 (541)
....+...|++++|+..|++... .+..++..+..++.+.|++++|+..|++..+..-.. ....+
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 13345668999999999988753 356788889999999999999999999988753211 11111
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC--C-ChhHHHH---------
Q 048358 253 VSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE--R-DVVSWST--------- 320 (541)
Q Consensus 253 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~--------- 320 (541)
......+...|++++|...++++.+.. +.+...+..+..+|...|++++|++.|+++.+ | +...+..
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~ 433 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQS 433 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 112345678899999999999998875 34566777889999999999999999988743 2 2222222
Q ss_pred ---------------------------------HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHH
Q 048358 321 ---------------------------------VIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWN 367 (541)
Q Consensus 321 ---------------------------------l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 367 (541)
+...+...|++++|+..|++..+.. +-+...+..+...|...|+++
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 2334556789999999999988865 445667778888999999999
Q ss_pred HHHHHHHHhhhhcCCCCcHhHHHHHHH--------------------------------------------HHHhcCCHH
Q 048358 368 EGLMYFDSMKRDHHIEHKIEHYGCLVD--------------------------------------------LLGRAGRLD 403 (541)
Q Consensus 368 ~a~~~~~~~~~~~~~~~~~~~~~~l~~--------------------------------------------~~~~~g~~~ 403 (541)
+|...++++.+.. +.+...+..+.. .+...|+.+
T Consensus 513 ~A~~~l~~al~~~--P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 513 QADALMRRLAQQK--PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHHHHHHcC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence 9999999987642 333333333333 334445555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 048358 404 QALNIIEEMPMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSM 483 (541)
Q Consensus 404 ~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 483 (541)
+|.++++.-+ ++...+..+...+.+.|++++|+..|+++++..|+++.++..++.+|...|++++|++.++.+.+...
T Consensus 591 eA~~~l~~~p--~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p 668 (1157)
T PRK11447 591 EAEALLRQQP--PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN 668 (1157)
T ss_pred HHHHHHHhCC--CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC
Confidence 5555555322 24455666777788999999999999999999999999999999999999999999999998765432
Q ss_pred ccCC-----ceeEEE---EcCEEEEEEeCCCCCCC------hhHHHHHHHHHHHHHhcccCCcccccccC
Q 048358 484 KKTP-----GCSLIE---VNNEVQEFVSGDDTKPF------LKDIFWLLELLALHQDRAKDVIDIMYEDI 539 (541)
Q Consensus 484 ~~~~-----~~~~~~---~~~~~~~~~~~~~~~p~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~i 539 (541)
.... +..+.. ...++..+.......|+ +..++..++.++...|+.++|++.+++++
T Consensus 669 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 669 DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1111 110100 01111111111122332 22355566777777777777777666543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-22 Score=221.32 Aligned_cols=453 Identities=12% Similarity=0.036 Sum_probs=266.7
Q ss_pred HHHhccChhHHHHHHHHHHHhccCCchhHHHHH-HHHHHcCCChHHHHHHHhcCCC--C-CcchHHHHHHHHHcCCChhH
Q 048358 20 ILQSCENLIELKKIHTQILKYLLSQSNFLVTKM-IDVCNSGGDLAYASLLFKQVKE--P-NVFLYNAMIRAYTNNHLYGL 95 (541)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~g~~~~ 95 (541)
++...+..+.+.+.++.+++.. +|+....... .......|+.++|.+.++++.+ | +...+..+...+...|+.++
T Consensus 121 ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~e 199 (1157)
T PRK11447 121 LLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDE 199 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHH
Confidence 3445566777777777776543 3343221112 2222345888889999988875 3 44567777888888899888
Q ss_pred HHHHHHHhhhCCCCCC-----------CCC----------------CCcccH---------------------HHHHHHH
Q 048358 96 AINLYKQMLRDPRTGS-----------LIL----------------PDKFTL---------------------PFVIKSC 127 (541)
Q Consensus 96 A~~~~~~m~~~~~~~~-----------~~~----------------p~~~~~---------------------~~ll~~~ 127 (541)
|+..++++........ ... |+...+ ......+
T Consensus 200 Al~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~ 279 (1157)
T PRK11447 200 GFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAA 279 (1157)
T ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHH
Confidence 9888888754321000 000 110000 0113345
Q ss_pred hccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCC--CCh---hhHH------------HHH
Q 048358 128 AGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTD--RDI---VAWN------------NLI 190 (541)
Q Consensus 128 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~------------~l~ 190 (541)
...|++++|...+++.++.. +.+...+..+..++.+.|++++|...|++..+ |+. ..|. ...
T Consensus 280 ~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g 358 (1157)
T PRK11447 280 VDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQG 358 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHH
Confidence 56788889999998888865 33677788888888899999999988888765 321 1121 223
Q ss_pred HHHHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHH--------
Q 048358 191 SGYARLGQMKKARMLFDKMPY---TTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPAC-------- 259 (541)
Q Consensus 191 ~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~-------- 259 (541)
..+.+.|++++|...|+++.. .+...+..+..++...|++++|++.|++..+.. +.+...+..+...+
T Consensus 359 ~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A 437 (1157)
T PRK11447 359 DAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKA 437 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHH
Confidence 456778889999998887753 345677778888888999999999998888653 22233333333333
Q ss_pred ----------------------------------HccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHH
Q 048358 260 ----------------------------------AQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQ 305 (541)
Q Consensus 260 ----------------------------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 305 (541)
...|++++|...++++.+.. +.+...+..+...|.+.|++++|..
T Consensus 438 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~ 516 (1157)
T PRK11447 438 LAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADA 516 (1157)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 23444445555554444433 1223344444555555555555555
Q ss_pred HHHccCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH---------HHHHHHHHHhccCcHHHHHHHH
Q 048358 306 LFDQMVE--R-DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDI---------TFIGLLSACAHTGFWNEGLMYF 373 (541)
Q Consensus 306 ~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---------~~~~l~~~~~~~g~~~~a~~~~ 373 (541)
.++++.+ | ++..+..+...+...++.++|+..++.+......++.. .+......+...|++++|.+++
T Consensus 517 ~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l 596 (1157)
T PRK11447 517 LMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALL 596 (1157)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 5544422 1 22222222223333344444444433322111011100 0112233344445555555554
Q ss_pred HHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC
Q 048358 374 DSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPED 451 (541)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (541)
+. .+++...+..+...+.+.|++++|++.|++. ...| +...+..++..+...|++++|++.++++.+..|++
T Consensus 597 ~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~ 670 (1157)
T PRK11447 597 RQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDS 670 (1157)
T ss_pred Hh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCC
Confidence 41 1344455666777777777777777777776 4445 45667777777777777777777777777777777
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 048358 452 TGNYVLLSNIYAKHGRWEDVSRMRKLIRSKS 482 (541)
Q Consensus 452 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 482 (541)
+..+..++.++...|++++|.++++++....
T Consensus 671 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 671 LNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 7777777777777777777777777776543
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-23 Score=192.72 Aligned_cols=412 Identities=14% Similarity=0.144 Sum_probs=343.7
Q ss_pred HHHHHHHHHcCCChHHHHHHHhcCCC-------------------------------------CCcchHHHHHHHHHcCC
Q 048358 49 VTKMIDVCNSGGDLAYASLLFKQVKE-------------------------------------PNVFLYNAMIRAYTNNH 91 (541)
Q Consensus 49 ~~~l~~~~~~~~~~~~A~~~~~~~~~-------------------------------------~~~~~~~~ll~~~~~~g 91 (541)
...|..-.-+.|++.+|++......+ .-..+|..+...+-..|
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhc
Confidence 34455555667888888876654321 12346888888999999
Q ss_pred ChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchh-hHHHHHHHHHcCCChHH
Q 048358 92 LYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSI-TENALLDLYGKCDELIE 170 (541)
Q Consensus 92 ~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~l~~~~~~~g~~~~ 170 (541)
++++|+..++.+++.. +.....|..+..++...|+.+.|.+.|.+.++.+ |+.. ..+.+...+-..|++.+
T Consensus 131 ~~~~al~~y~~aiel~------p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~e 202 (966)
T KOG4626|consen 131 QLQDALALYRAAIELK------PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEE 202 (966)
T ss_pred hHHHHHHHHHHHHhcC------chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccch
Confidence 9999999999999985 5678899999999999999999999999998854 4433 33455566667899999
Q ss_pred HHHHHhhcCC--CC-hhhHHHHHHHHHhcCCHHHHHHHHhcCCCCCc---chHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048358 171 AHKVFEEMTD--RD-IVAWNNLISGYARLGQMKKARMLFDKMPYTTI---VSWTAMISGYTHIGSYAEALDVFRQMQMVG 244 (541)
Q Consensus 171 A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 244 (541)
|...|.+..+ |. ..+|..|...+-.+|++-.|+.-|++..+-|+ .+|-.|...|-..+.+++|+..|.+....
T Consensus 203 a~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l- 281 (966)
T KOG4626|consen 203 AKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL- 281 (966)
T ss_pred hHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc-
Confidence 9999888765 43 46899999999999999999999999886655 58889999999999999999999998865
Q ss_pred CCCC-hHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC--C-ChhHHHH
Q 048358 245 IEPD-EISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE--R-DVVSWST 320 (541)
Q Consensus 245 ~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~ 320 (541)
.|+ ...+..+...|...|.++.|...+++.++.... -+..|+.|..++-..|+..+|...|++... | ...+.+.
T Consensus 282 -rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~N 359 (966)
T KOG4626|consen 282 -RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNN 359 (966)
T ss_pred -CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHH
Confidence 554 456677777788999999999999999887532 267899999999999999999999998854 3 4668899
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCc-HhHHHHHHHHHHhc
Q 048358 321 VIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHK-IEHYGCLVDLLGRA 399 (541)
Q Consensus 321 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 399 (541)
|...|...|.+++|..+|....+.. +--...++.|...|-..|++++|+..|++..+ +.|+ ...|+.+...|-..
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~~NmGnt~ke~ 435 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADALSNMGNTYKEM 435 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHHHhcchHHHHh
Confidence 9999999999999999999988853 33456789999999999999999999999986 4565 67899999999999
Q ss_pred CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 048358 400 GRLDQALNIIEEM-PMKPD-AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMR 475 (541)
Q Consensus 400 g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 475 (541)
|+.+.|++.+.+. .+.|. ...++.|...|...|++.+|++.|+.++++.|+.+.+|..++.++.-..+|.+--+.+
T Consensus 436 g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~ 513 (966)
T KOG4626|consen 436 GDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRM 513 (966)
T ss_pred hhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHH
Confidence 9999999999887 77886 5788999999999999999999999999999999999999999887777766643333
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.3e-24 Score=195.47 Aligned_cols=388 Identities=13% Similarity=0.077 Sum_probs=242.4
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHH
Q 048358 80 YNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALL 159 (541)
Q Consensus 80 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 159 (541)
...+..-..+.|++++|.+.-...-+.+ +.+......+-..+.+..+.+...+--...++.. +.-..+|..+.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d------~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~a 123 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED------PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLA 123 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC------CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHH
Confidence 3345556677888888888776665543 3344444444555666666665555444444432 23456677777
Q ss_pred HHHHcCCChHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCCcc---hHHHHHHHHHhcCChHHH
Q 048358 160 DLYGKCDELIEAHKVFEEMTD---RDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIV---SWTAMISGYTHIGSYAEA 233 (541)
Q Consensus 160 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A 233 (541)
+.+-..|++++|+..++.+.+ ..+..|..+..++...|+.+.|...|.+..+-|+. ..+.+...+-..|+.++|
T Consensus 124 N~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea 203 (966)
T KOG4626|consen 124 NILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEA 203 (966)
T ss_pred HHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchh
Confidence 777777777777777777765 24567777777777777777777777766544432 222233444456677777
Q ss_pred HHHHHHHHHCCCCCC-hHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccC-
Q 048358 234 LDVFRQMQMVGIEPD-EISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMV- 311 (541)
Q Consensus 234 ~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 311 (541)
...|.+..+. +|. ...|+.+...+-..|+...|.+.|+++++.+.. -...|-.|...|...+.+++|...|.+..
T Consensus 204 ~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~ 280 (966)
T KOG4626|consen 204 KACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYLRALN 280 (966)
T ss_pred HHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHh
Confidence 7766666654 343 234555555566667777777777766655422 14456666777777777777776666552
Q ss_pred -CC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHH
Q 048358 312 -ER-DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHY 389 (541)
Q Consensus 312 -~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 389 (541)
.| ...++..+...|-.+|..+-|+..|++.++.. +--...|+.+..++-..|++.+|.+.|.....- .+......
T Consensus 281 lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam 357 (966)
T KOG4626|consen 281 LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAM 357 (966)
T ss_pred cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHH
Confidence 23 34556666666666677777777777666643 223456677777776667777777777766653 23445556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 048358 390 GCLVDLLGRAGRLDQALNIIEEM-PMKPD-AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGR 467 (541)
Q Consensus 390 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 467 (541)
+.|...|...|.+++|..+|... .+.|. ...++.|...|.++|++++|+..|++++.+.|.-.++|..+++.|-..|+
T Consensus 358 ~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 358 NNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhh
Confidence 66777777777777777766665 44554 35566666667777777777777777777777766677777777777777
Q ss_pred HHHHHHHHHHhhh
Q 048358 468 WEDVSRMRKLIRS 480 (541)
Q Consensus 468 ~~~A~~~~~~m~~ 480 (541)
.+.|...+.+...
T Consensus 438 v~~A~q~y~rAI~ 450 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQ 450 (966)
T ss_pred HHHHHHHHHHHHh
Confidence 7777766666543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-21 Score=203.40 Aligned_cols=471 Identities=12% Similarity=0.033 Sum_probs=266.1
Q ss_pred cChhHHHHHHHHHHHhccCCchhHHHHHHHHHHcCCChHHHHHHHhcCCC--CCcchHHHHHHHHHcCCChhHHHHHHHH
Q 048358 25 ENLIELKKIHTQILKYLLSQSNFLVTKMIDVCNSGGDLAYASLLFKQVKE--PNVFLYNAMIRAYTNNHLYGLAINLYKQ 102 (541)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 102 (541)
++...+...++..++.. +-++.++..+...|.+.|+.++|+..+++..+ |+-..|..++..+ +++.+|..++++
T Consensus 58 Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~ 133 (987)
T PRK09782 58 NDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEE 133 (987)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHH
Confidence 45556667777777665 44688889999999999999999999999886 4434444444333 888899999999
Q ss_pred hhhCCCCCCCCCCCcccHHHHHHH--------HhccCCchHHHHHHHHHHHhCCCCchhhHHHH-HHHHHcCCChHHHHH
Q 048358 103 MLRDPRTGSLILPDKFTLPFVIKS--------CAGLLCPSLGKQIHAHVCKFGLKSHSITENAL-LDLYGKCDELIEAHK 173 (541)
Q Consensus 103 m~~~~~~~~~~~p~~~~~~~ll~~--------~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-~~~~~~~g~~~~A~~ 173 (541)
+.... |-+..++..+... |.+. +.|.+.++ .....+.|+..+.... ..+|.+.|++++|++
T Consensus 134 l~~~~------P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~ 203 (987)
T PRK09782 134 LLAQQ------KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADT 203 (987)
T ss_pred HHHhC------CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHH
Confidence 98875 3444455444444 3333 44555444 3332333334434433 677777777777777
Q ss_pred HHhhcCCC---ChhhHHHHHHHHHh-cCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC
Q 048358 174 VFEEMTDR---DIVAWNNLISGYAR-LGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIE-PD 248 (541)
Q Consensus 174 ~~~~~~~~---~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~ 248 (541)
++.++.+. +......+...|.+ .++ +++..++....+.++..+..++..|.+.|+.++|.++++++...-.. |.
T Consensus 204 lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~ 282 (987)
T PRK09782 204 LYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQ 282 (987)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCc
Confidence 77776652 22334445555555 244 66666655444455666666666666666666666666665322110 11
Q ss_pred hHHHHHH------------------------------HHH----------------------------------------
Q 048358 249 EISIVSV------------------------------LPA---------------------------------------- 258 (541)
Q Consensus 249 ~~~~~~l------------------------------l~~---------------------------------------- 258 (541)
..++..+ +..
T Consensus 283 ~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 362 (987)
T PRK09782 283 EKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEAL 362 (987)
T ss_pred cHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHH
Confidence 1111000 000
Q ss_pred -----------------------HHccCChHHHHHHHHHHHHh-C-CCccHhHHHHHHHHHHhcCC--------------
Q 048358 259 -----------------------CAQLGSLELGEWIHMYCDKN-H-LLRRTVICNALIEMYIKCGC-------------- 299 (541)
Q Consensus 259 -----------------------~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~-------------- 299 (541)
....|+.++|.+++...... + ...+......|+..|.+.+.
T Consensus 363 ~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~ 442 (987)
T PRK09782 363 RLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPL 442 (987)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcccc
Confidence 11223333344443333321 0 11122233344444444433
Q ss_pred -------------------------------------------------HHHHHHHHHccCC--CChhHHHHHHHHHHhc
Q 048358 300 -------------------------------------------------INQASQLFDQMVE--RDVVSWSTVIGGLANH 328 (541)
Q Consensus 300 -------------------------------------------------~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~ 328 (541)
.++|...+.+... |+......+...+...
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~ 522 (987)
T PRK09782 443 PLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQV 522 (987)
T ss_pred ccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 3333333322211 1111111112222345
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHH
Q 048358 329 GKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNI 408 (541)
Q Consensus 329 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 408 (541)
|++++|...|+++... +|+...+..+..++...|++++|...++...+.. +++...+..+.....+.|++++|...
T Consensus 523 Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~ 598 (987)
T PRK09782 523 EDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALND 598 (987)
T ss_pred CCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHH
Confidence 5555555555554332 3333334444455555566666666665555421 22222222233333344666666666
Q ss_pred HHhC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCC
Q 048358 409 IEEM-PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTP 487 (541)
Q Consensus 409 ~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 487 (541)
+++. ...|+...+..+..++.+.|++++|+..++++++.+|+++..+..++.++...|++++|+..+++..+
T Consensus 599 ~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~------- 671 (987)
T PRK09782 599 LTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHK------- 671 (987)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------
Confidence 6655 45566666666666666667777777777776666666666666666666666777777666666544
Q ss_pred ceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCcccccccCC
Q 048358 488 GCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMYEDIG 540 (541)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~i~ 540 (541)
.+|+++.++..++.++..+|+.++|.+.++++|+
T Consensus 672 -------------------l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 672 -------------------GLPDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred -------------------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5799999999999999999999999999888764
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.9e-21 Score=195.22 Aligned_cols=419 Identities=13% Similarity=0.041 Sum_probs=286.5
Q ss_pred HHHHHHHHcCCChHHHHHHHhcCCC--CCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHH
Q 048358 50 TKMIDVCNSGGDLAYASLLFKQVKE--PNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSC 127 (541)
Q Consensus 50 ~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~ 127 (541)
......|.+.|+++.|...|++..+ |+...|..+..+|.+.|++++|++.++..++.. +.+...+..+..++
T Consensus 131 k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~------p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 131 KEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD------PDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC------CCCHHHHHHHHHHH
Confidence 3445566667777777777776554 566666677777777777777777777777654 44556677777777
Q ss_pred hccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHh
Q 048358 128 AGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFD 207 (541)
Q Consensus 128 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 207 (541)
...|++++|..-+..+...+...+.. ...++..+........+...++.-+ ++...+..+.. +...........-++
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~ 281 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLE 281 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhh
Confidence 77777777776666554443111111 1111111111111223333332221 12222222222 211111111111111
Q ss_pred cCCCCCc---chHHHHHHHH---HhcCChHHHHHHHHHHHHCC-CCC-ChHHHHHHHHHHHccCChHHHHHHHHHHHHhC
Q 048358 208 KMPYTTI---VSWTAMISGY---THIGSYAEALDVFRQMQMVG-IEP-DEISIVSVLPACAQLGSLELGEWIHMYCDKNH 279 (541)
Q Consensus 208 ~~~~~~~---~~~~~l~~~~---~~~g~~~~A~~~~~~m~~~~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 279 (541)
.....+. ..+..+...+ ...+++++|.+.|++....+ ..| ....+..+...+...|+++.|...++...+..
T Consensus 282 ~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~ 361 (615)
T TIGR00990 282 DSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD 361 (615)
T ss_pred cccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 1111111 1111111111 23478999999999998764 234 34567777777889999999999999998764
Q ss_pred CCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 048358 280 LLRRTVICNALIEMYIKCGCINQASQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGL 356 (541)
Q Consensus 280 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 356 (541)
+.....|..+...+...|++++|...|+++.+ .+..+|..+...+...|++++|...|++..+.. +.+...+..+
T Consensus 362 -P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~l 439 (615)
T TIGR00990 362 -PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQL 439 (615)
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHH
Confidence 33466788899999999999999999998744 357789999999999999999999999999875 5567788888
Q ss_pred HHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-H-------HHHHHHHH
Q 048358 357 LSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPDA-K-------IWGSLLSS 427 (541)
Q Consensus 357 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~-------~~~~l~~~ 427 (541)
..++.+.|++++|+..|+...+. .+.+...++.+...+...|++++|++.|++. .+.|+. . .+......
T Consensus 440 a~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~ 517 (615)
T TIGR00990 440 GVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALAL 517 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHH
Confidence 99999999999999999999874 3566788999999999999999999999986 444431 1 11222222
Q ss_pred HhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 428 CRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 428 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
+...|++++|.+.++++++++|++...+..++.++.+.|++++|.+.+++..+.
T Consensus 518 ~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 518 FQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 444699999999999999999999989999999999999999999999998654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.4e-20 Score=189.70 Aligned_cols=479 Identities=8% Similarity=-0.031 Sum_probs=328.5
Q ss_pred CCCChhhHHHHHHhccChhHHHHHHHHHHHhccCCchhHHHHHHHH--------HHcCCChHHHHHHHhcCCCCC--cch
Q 048358 10 IKELEDRFVPILQSCENLIELKKIHTQILKYLLSQSNFLVTKMIDV--------CNSGGDLAYASLLFKQVKEPN--VFL 79 (541)
Q Consensus 10 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~A~~~~~~~~~~~--~~~ 79 (541)
..|+...+...+........+..+++.+++.. +-+..++..+... |.+.+....+++ .+...|+ ...
T Consensus 107 ldP~n~~~~~~La~i~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~v 183 (987)
T PRK09782 107 RHPGDARLERSLAAIPVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKT 183 (987)
T ss_pred cCcccHHHHHHHHHhccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHH
Confidence 45665666666666666666667777777665 3345566666665 666666666665 2223333 333
Q ss_pred -HHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhc-cCCchHHHHHHHHHHHhCCCCchhhHHH
Q 048358 80 -YNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAG-LLCPSLGKQIHAHVCKFGLKSHSITENA 157 (541)
Q Consensus 80 -~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 157 (541)
.-.+.+.|.+.|++++|+.+++++.+.+ +.+..-...+..++.. .++ +.+..++.. .++.+......
T Consensus 184 L~L~~~rlY~~l~dw~~Ai~lL~~L~k~~------pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~a 252 (987)
T PRK09782 184 LRTDLLQRAIYLKQWSQADTLYNEARQQN------TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRIT 252 (987)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHH
Confidence 3344788899999999999999999886 4555556667777776 366 666666442 34457788889
Q ss_pred HHHHHHcCCChHHHHHHHhhcCC-----CChhhHH------------------------------HHHHHHHh-------
Q 048358 158 LLDLYGKCDELIEAHKVFEEMTD-----RDIVAWN------------------------------NLISGYAR------- 195 (541)
Q Consensus 158 l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~------------------------------~l~~~~~~------- 195 (541)
++..|.+.|+.++|.++++++.. |...+|. .++..+.+
T Consensus 253 la~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (987)
T PRK09782 253 YATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAA 332 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHH
Confidence 99999999999999999998864 2222211 11333333
Q ss_pred --------------------------------------------------------cCCHHHHHHHHhcCCC--CC----
Q 048358 196 --------------------------------------------------------LGQMKKARMLFDKMPY--TT---- 213 (541)
Q Consensus 196 --------------------------------------------------------~~~~~~A~~~~~~~~~--~~---- 213 (541)
.|+.++|.++|..... ++
T Consensus 333 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 412 (987)
T PRK09782 333 QKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLS 412 (987)
T ss_pred HHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccC
Confidence 3444444444444332 11
Q ss_pred cchHHHHHHHHHhcCC---hHHHHHH----------------------HHHHHHC-CC-CC--ChHHHHHHHHHHHccCC
Q 048358 214 IVSWTAMISGYTHIGS---YAEALDV----------------------FRQMQMV-GI-EP--DEISIVSVLPACAQLGS 264 (541)
Q Consensus 214 ~~~~~~l~~~~~~~g~---~~~A~~~----------------------~~~m~~~-~~-~p--~~~~~~~ll~~~~~~~~ 264 (541)
....+.++..|.+.+. ..++..+ +...... +. ++ +...+..+..++.. ++
T Consensus 413 ~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~ 491 (987)
T PRK09782 413 QTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TL 491 (987)
T ss_pred HHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CC
Confidence 1122244444444433 2222221 1111110 11 22 34445555555554 67
Q ss_pred hHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048358 265 LELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE--RDVVSWSTVIGGLANHGKAHKAIHLFHEMQ 342 (541)
Q Consensus 265 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 342 (541)
.++|...+....... |+......+...+...|++++|...|+++.. ++...+..+...+.+.|++++|..++++..
T Consensus 492 ~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL 569 (987)
T PRK09782 492 PGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAE 569 (987)
T ss_pred cHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 778888777776654 4443344445556789999999999998744 444566777888899999999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHH
Q 048358 343 RLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPD-AKI 420 (541)
Q Consensus 343 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~ 420 (541)
+.+ +++...+..+.......|++++|...+++..+. .|+...|..+..++.+.|++++|+..+++. ...|+ ...
T Consensus 570 ~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a 645 (987)
T PRK09782 570 QRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI---APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNY 645 (987)
T ss_pred hcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 875 444444444555556679999999999999874 467888999999999999999999999998 66674 567
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEE
Q 048358 421 WGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQE 500 (541)
Q Consensus 421 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~ 500 (541)
+..+..++...|++++|+..++++++..|.++..+..++.++...|++++|+..+++..+
T Consensus 646 ~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~-------------------- 705 (987)
T PRK09782 646 QAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVID-------------------- 705 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--------------------
Confidence 777878899999999999999999999999999999999999999999999999999865
Q ss_pred EEeCCCCCCChhHHHHHHHHHHHHHhcccCCcccc
Q 048358 501 FVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIM 535 (541)
Q Consensus 501 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 535 (541)
+.|+...+....+++..+......+.+.+
T Consensus 706 ------l~P~~a~i~~~~g~~~~~~~~~~~a~~~~ 734 (987)
T PRK09782 706 ------DIDNQALITPLTPEQNQQRFNFRRLHEEV 734 (987)
T ss_pred ------cCCCCchhhhhhhHHHHHHHHHHHHHHHH
Confidence 35677777777777776666555544433
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-20 Score=190.47 Aligned_cols=419 Identities=11% Similarity=-0.011 Sum_probs=305.7
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHH
Q 048358 80 YNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALL 159 (541)
Q Consensus 80 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 159 (541)
+......+.+.|++++|+..|++.++. .|+...|..+..++...|+++.|...++..++.. +.+...+..+.
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~-------~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a 201 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC-------KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRA 201 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 445667788999999999999999876 6778889899999999999999999999999875 34567888899
Q ss_pred HHHHcCCChHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHH
Q 048358 160 DLYGKCDELIEAHKVFEEMTD---RDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDV 236 (541)
Q Consensus 160 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 236 (541)
.+|...|++++|..-|..... .+......++..+........+...++.-. .+...+..+.. |....+......-
T Consensus 202 ~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~ 279 (615)
T TIGR00990 202 NAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAG 279 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhh
Confidence 999999999999987765432 111111122222212112233444443322 23333333333 2222222222222
Q ss_pred HHHHHHCCCCCCh-HHHHHHHH---HHHccCChHHHHHHHHHHHHhC--CCccHhHHHHHHHHHHhcCCHHHHHHHHHcc
Q 048358 237 FRQMQMVGIEPDE-ISIVSVLP---ACAQLGSLELGEWIHMYCDKNH--LLRRTVICNALIEMYIKCGCINQASQLFDQM 310 (541)
Q Consensus 237 ~~~m~~~~~~p~~-~~~~~ll~---~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 310 (541)
+....+ ..|.. ..+..+.. -....+++++|...|+.+.+.+ .+.....+..+...+...|++++|...|++.
T Consensus 280 ~~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ka 357 (615)
T TIGR00990 280 LEDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKS 357 (615)
T ss_pred hhcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 221111 11211 11111111 1133568899999999998865 2334567888899999999999999999998
Q ss_pred CC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHh
Q 048358 311 VE--R-DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIE 387 (541)
Q Consensus 311 ~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 387 (541)
.+ | +...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...|++.... .+.+..
T Consensus 358 l~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~ 434 (615)
T TIGR00990 358 IELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIF 434 (615)
T ss_pred HHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHH
Confidence 54 3 35578888899999999999999999998875 566788999999999999999999999999874 355677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHH-------H
Q 048358 388 HYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVL-------L 458 (541)
Q Consensus 388 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------l 458 (541)
.+..+...+.+.|++++|+..|++. ...| +...+..+...+...|++++|+..|++++++.|.+...+.. .
T Consensus 435 ~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a 514 (615)
T TIGR00990 435 SHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKA 514 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHH
Confidence 8888999999999999999999987 5556 46788889999999999999999999999998875433221 2
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCccccccc
Q 048358 459 SNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMYED 538 (541)
Q Consensus 459 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 538 (541)
+..+...|++++|.+++++... ++|++..++..|++++.++|+.++|+..++++
T Consensus 515 ~~~~~~~~~~~eA~~~~~kAl~--------------------------l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A 568 (615)
T TIGR00990 515 LALFQWKQDFIEAENLCEKALI--------------------------IDPECDIAVATMAQLLLQQGDVDEALKLFERA 568 (615)
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--------------------------cCCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 2234457999999999998764 36778888999999999999999999998876
Q ss_pred C
Q 048358 539 I 539 (541)
Q Consensus 539 i 539 (541)
+
T Consensus 569 ~ 569 (615)
T TIGR00990 569 A 569 (615)
T ss_pred H
Confidence 5
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-20 Score=181.50 Aligned_cols=270 Identities=13% Similarity=0.090 Sum_probs=186.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---hHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHH
Q 048358 216 SWTAMISGYTHIGSYAEALDVFRQMQMVGIEPD---EISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIE 292 (541)
Q Consensus 216 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 292 (541)
++..+...+...|++++|..+++.+...+..++ ...+..+...+...|+++.|..+|..+.+.. +.+..++..++.
T Consensus 71 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~ 149 (389)
T PRK11788 71 LHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLE 149 (389)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHH
Confidence 445555555555555555555555554321111 1234445555555555555555555555432 234555666666
Q ss_pred HHHhcCCHHHHHHHHHccCCCC--------hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 048358 293 MYIKCGCINQASQLFDQMVERD--------VVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTG 364 (541)
Q Consensus 293 ~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 364 (541)
.+...|++++|.+.++.+.+.+ ...+..+...+...|++++|...|+++.+.. +.+...+..+...+.+.|
T Consensus 150 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g 228 (389)
T PRK11788 150 IYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQG 228 (389)
T ss_pred HHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCC
Confidence 6666677777766666663321 1134556777788899999999999888764 445667778888899999
Q ss_pred cHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 048358 365 FWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEH 443 (541)
Q Consensus 365 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 443 (541)
++++|.++|+++.... ......++..++.+|...|++++|...++++ ...|+...+..++..+.+.|++++|..++++
T Consensus 229 ~~~~A~~~~~~~~~~~-p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~ 307 (389)
T PRK11788 229 DYAAAIEALERVEEQD-PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLRE 307 (389)
T ss_pred CHHHHHHHHHHHHHHC-hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999999999988642 1122456788889999999999999999987 5567777778888889999999999999999
Q ss_pred HhccCCCCcchHHHHHHHHHh---cCCHHHHHHHHHHhhhCCCccCCce
Q 048358 444 LLVLEPEDTGNYVLLSNIYAK---HGRWEDVSRMRKLIRSKSMKKTPGC 489 (541)
Q Consensus 444 ~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~ 489 (541)
+++..|++. .+..+...+.. .|+.+++..++++|.++++.+.|.+
T Consensus 308 ~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 308 QLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred HHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 999888865 45555555443 5689999999999998888777764
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.3e-19 Score=178.40 Aligned_cols=355 Identities=10% Similarity=-0.013 Sum_probs=203.5
Q ss_pred HcCCChHHHHHHHhcCCC------CCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhcc
Q 048358 57 NSGGDLAYASLLFKQVKE------PNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGL 130 (541)
Q Consensus 57 ~~~~~~~~A~~~~~~~~~------~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~ 130 (541)
.+..+++.---.|...++ .+......++..+.+.|++++|..+++...... +-+...+..++.+....
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~------p~~~~~l~~l~~~~l~~ 89 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA------KNGRDLLRRWVISPLAS 89 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC------CCchhHHHHHhhhHhhc
Confidence 344555555555555543 122333445566677777777777777777654 34445555566666667
Q ss_pred CCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCC
Q 048358 131 LCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMP 210 (541)
Q Consensus 131 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 210 (541)
|+++.|...++.+.+.. +.+...+..+...+...|++++|...+++.... .
T Consensus 90 g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l----------------------------~ 140 (656)
T PRK15174 90 SQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLA----------------------------F 140 (656)
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------------------C
Confidence 77777777777777764 334556666667777777777777777665431 0
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHH
Q 048358 211 YTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNAL 290 (541)
Q Consensus 211 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 290 (541)
..++..+..+..++...|++++|...++.+.... |+.......+..+...|++++|...++.+.+....++...+..+
T Consensus 141 P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l 218 (656)
T PRK15174 141 SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLA 218 (656)
T ss_pred CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHH
Confidence 1122334444444444555555555444443331 11111111112244445555555555444443322223333344
Q ss_pred HHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHhcCChHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 048358 291 IEMYIKCGCINQASQLFDQMVE---RDVVSWSTVIGGLANHGKAHK----AIHLFHEMQRLKVPPNDITFIGLLSACAHT 363 (541)
Q Consensus 291 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~----a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 363 (541)
...+...|++++|...+++... .+...+..+...+...|++++ |...|++..+.. +.+...+..+...+...
T Consensus 219 ~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~ 297 (656)
T PRK15174 219 VDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRT 297 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHC
Confidence 4555566666666666655532 234455556666666666664 677777776653 44555666777777777
Q ss_pred CcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHH-HHHHHHHHhhcCCHHHHHHHH
Q 048358 364 GFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPDAKI-WGSLLSSCRTYSNLEIAVIAM 441 (541)
Q Consensus 364 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~ 441 (541)
|++++|...++...... +.+...+..+..++.+.|++++|...|+++ ...|+... +..+..++...|+.++|+..|
T Consensus 298 g~~~eA~~~l~~al~l~--P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l 375 (656)
T PRK15174 298 GQNEKAIPLLQQSLATH--PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVF 375 (656)
T ss_pred CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 77777777777776632 444555666777777777777777777766 34555433 333445567777777777777
Q ss_pred HHHhccCCCC
Q 048358 442 EHLLVLEPED 451 (541)
Q Consensus 442 ~~~~~~~~~~ 451 (541)
+++++..|++
T Consensus 376 ~~al~~~P~~ 385 (656)
T PRK15174 376 EHYIQARASH 385 (656)
T ss_pred HHHHHhChhh
Confidence 7777777664
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-19 Score=184.37 Aligned_cols=347 Identities=10% Similarity=-0.026 Sum_probs=278.6
Q ss_pred HHHHHHHHcCCChHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCC
Q 048358 156 NALLDLYGKCDELIEAHKVFEEMTD---RDIVAWNNLISGYARLGQMKKARMLFDKMPY---TTIVSWTAMISGYTHIGS 229 (541)
Q Consensus 156 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~ 229 (541)
..++..+.+.|++++|..+++.... .+...+..++.+....|++++|.+.|+++.. .+...+..+...+...|+
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~ 125 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQ 125 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Confidence 4456778889999999999988865 3455677777888889999999999999863 355788889999999999
Q ss_pred hHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHc
Q 048358 230 YAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQ 309 (541)
Q Consensus 230 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 309 (541)
+++|...|+++.... +.+...+..+...+...|+++.|...++.+......+ ...+..+ ..+...|++++|...++.
T Consensus 126 ~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 126 YATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPEDHDLARA 202 (656)
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHHHHHHHH
Confidence 999999999998762 3345677788888999999999999999887765433 3344333 347889999999999998
Q ss_pred cCCC----ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHH----HHHHHHHhhhhcC
Q 048358 310 MVER----DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNE----GLMYFDSMKRDHH 381 (541)
Q Consensus 310 ~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~ 381 (541)
+.+. +...+..+...+...|++++|+..++++.... +.+...+..+...+...|++++ |...|+++.+.
T Consensus 203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l-- 279 (656)
T PRK15174 203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF-- 279 (656)
T ss_pred HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--
Confidence 7553 23344556678889999999999999999875 5567788889999999999986 89999999874
Q ss_pred CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHH
Q 048358 382 IEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPD-AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLS 459 (541)
Q Consensus 382 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 459 (541)
-|.+...+..+...+.+.|++++|...+++. ...|+ ...+..+..++.+.|++++|+..++++.+.+|.++..+..++
T Consensus 280 ~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a 359 (656)
T PRK15174 280 NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAA 359 (656)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 3566788999999999999999999999988 55564 566777888899999999999999999999999877777788
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhccc
Q 048358 460 NIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAK 529 (541)
Q Consensus 460 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 529 (541)
.++...|++++|...+++..+..... ..+...++...+...+...+..+
T Consensus 360 ~al~~~G~~deA~~~l~~al~~~P~~---------------------~~~~~~ea~~~~~~~~~~~~~~~ 408 (656)
T PRK15174 360 AALLQAGKTSEAESVFEHYIQARASH---------------------LPQSFEEGLLALDGQISAVNLPP 408 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhChhh---------------------chhhHHHHHHHHHHHHHhcCCcc
Confidence 89999999999999999987764321 24455556666666666665544
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-18 Score=180.51 Aligned_cols=400 Identities=11% Similarity=0.032 Sum_probs=259.0
Q ss_pred CCchhHHHHHHHHHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCccc
Q 048358 43 SQSNFLVTKMIDVCNSGGDLAYASLLFKQVKE---PNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFT 119 (541)
Q Consensus 43 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~ 119 (541)
+.++....-.+.+....|+.++|++++.+... .+...+..+...+...|++++|..+|++..+.. +.+...
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~------P~~~~a 85 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE------PQNDDY 85 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHH
Confidence 44566666777778888888888888887664 333457778888888888888888888887764 555666
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCC--C-ChhhHHHHHHHHHhc
Q 048358 120 LPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTD--R-DIVAWNNLISGYARL 196 (541)
Q Consensus 120 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~ 196 (541)
+..+..++...|++++|...++++++.. +.+.. +..+..++...|+.++|...++++.+ | +...+..+...+...
T Consensus 86 ~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~ 163 (765)
T PRK10049 86 QRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNN 163 (765)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 7777778888888888888888888764 33455 77778888888888888888888765 3 344555666667777
Q ss_pred CCHHHHHHHHhcCCCCCcc--------hHHHHHHHHHhc-----CCh---HHHHHHHHHHHHC-CCCCChHHHHHHHHHH
Q 048358 197 GQMKKARMLFDKMPYTTIV--------SWTAMISGYTHI-----GSY---AEALDVFRQMQMV-GIEPDEISIVSVLPAC 259 (541)
Q Consensus 197 ~~~~~A~~~~~~~~~~~~~--------~~~~l~~~~~~~-----g~~---~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~ 259 (541)
+..+.|.+.++.... ++. ....++...... +++ ++|++.++.+... ...|+...-
T Consensus 164 ~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~------- 235 (765)
T PRK10049 164 RLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATAD------- 235 (765)
T ss_pred CChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchH-------
Confidence 777777777776654 211 111111111111 112 3344444444432 111111000
Q ss_pred HccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCCC---h-hHHHHHHHHHHhcCChHHHH
Q 048358 260 AQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERD---V-VSWSTVIGGLANHGKAHKAI 335 (541)
Q Consensus 260 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~-~~~~~l~~~~~~~~~~~~a~ 335 (541)
........+..+...|++++|+..|+.+.+.+ + .....+...|...|++++|+
T Consensus 236 -----------------------~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~ 292 (765)
T PRK10049 236 -----------------------YQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQ 292 (765)
T ss_pred -----------------------HHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence 00000111223345566667777666664421 1 11222455666777777777
Q ss_pred HHHHHHHhCCCCCC----HHHHHHHHHHHhccCcHHHHHHHHHHhhhhcC----------CCCc---HhHHHHHHHHHHh
Q 048358 336 HLFHEMQRLKVPPN----DITFIGLLSACAHTGFWNEGLMYFDSMKRDHH----------IEHK---IEHYGCLVDLLGR 398 (541)
Q Consensus 336 ~~~~~m~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~ 398 (541)
.+|+++.... +.+ ......+..++...|++++|.++++.+..... -.|+ ...+..+...+..
T Consensus 293 ~~l~~~l~~~-p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~ 371 (765)
T PRK10049 293 SILTELFYHP-ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKY 371 (765)
T ss_pred HHHHHHhhcC-CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHH
Confidence 7777765532 111 23344555566777777777777777665310 0122 2345567778888
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 048358 399 AGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRK 476 (541)
Q Consensus 399 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 476 (541)
.|++++|++.++++ ...| +...+..+...+...|++++|++.++++++..|+++..+..++..+.+.|++++|+.+++
T Consensus 372 ~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~ 451 (765)
T PRK10049 372 SNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTD 451 (765)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 89999999988887 4445 567777788888889999999999999999899988888888888889999999999998
Q ss_pred HhhhCC
Q 048358 477 LIRSKS 482 (541)
Q Consensus 477 ~m~~~~ 482 (541)
++.+..
T Consensus 452 ~ll~~~ 457 (765)
T PRK10049 452 DVVARE 457 (765)
T ss_pred HHHHhC
Confidence 887754
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-18 Score=179.45 Aligned_cols=408 Identities=10% Similarity=-0.015 Sum_probs=275.4
Q ss_pred hhHHHHHHhccChhHHHHHHHHHHHhccCCchhHHHHHHHHHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHcCC
Q 048358 15 DRFVPILQSCENLIELKKIHTQILKYLLSQSNFLVTKMIDVCNSGGDLAYASLLFKQVKE---PNVFLYNAMIRAYTNNH 91 (541)
Q Consensus 15 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g 91 (541)
.-+..|..-.+....+.+++....... +.+...+..+...+.+.|++++|..+|++..+ .+...+..+...+...|
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g 97 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAG 97 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 345566666778888888888777633 44556789999999999999999999999653 34566778888999999
Q ss_pred ChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHH
Q 048358 92 LYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEA 171 (541)
Q Consensus 92 ~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A 171 (541)
++++|+..+++..+.. +.+.. +..+..++...|+.+.|...++++++..+ .+...+..+..++...|..+.|
T Consensus 98 ~~~eA~~~l~~~l~~~------P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 98 QYDEALVKAKQLVSGA------PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred CHHHHHHHHHHHHHhC------CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHHH
Confidence 9999999999999875 55666 88888899999999999999999999753 3566666788888899999999
Q ss_pred HHHHhhcCC-CCh------hhHHHHHHHHH-----hcCCH---HHHHHHHhcCCC---CCcch---H----HHHHHHHHh
Q 048358 172 HKVFEEMTD-RDI------VAWNNLISGYA-----RLGQM---KKARMLFDKMPY---TTIVS---W----TAMISGYTH 226 (541)
Q Consensus 172 ~~~~~~~~~-~~~------~~~~~l~~~~~-----~~~~~---~~A~~~~~~~~~---~~~~~---~----~~l~~~~~~ 226 (541)
.+.++.... |+. .....++.... ..+++ ++|++.++.+.. .++.. + ...+..+..
T Consensus 170 l~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~ 249 (765)
T PRK10049 170 LGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLA 249 (765)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHH
Confidence 999998876 221 11222222222 12234 677777776652 22211 1 111334567
Q ss_pred cCChHHHHHHHHHHHHCCCC-CChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCc---cHhHHHHHHHHHHhcCCHHH
Q 048358 227 IGSYAEALDVFRQMQMVGIE-PDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLR---RTVICNALIEMYIKCGCINQ 302 (541)
Q Consensus 227 ~g~~~~A~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~ 302 (541)
.|++++|+..|+++.+.+.+ |+. ....+...+...|++++|...++.+.+..... .......+..++...|++++
T Consensus 250 ~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~e 328 (765)
T PRK10049 250 RDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPG 328 (765)
T ss_pred hhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHH
Confidence 78999999999998876522 322 11223445666666666666666655432111 01223333334444444444
Q ss_pred HHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHhccCcHHHHHHHHHHhhhh
Q 048358 303 ASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPND---ITFIGLLSACAHTGFWNEGLMYFDSMKRD 379 (541)
Q Consensus 303 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 379 (541)
|...++.+...++.... ++. ...-.|+. ..+..+...+...|++++|+++++++...
T Consensus 329 A~~~l~~~~~~~P~~~~-----------------~~~---~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~ 388 (765)
T PRK10049 329 ALTVTAHTINNSPPFLR-----------------LYG---SPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN 388 (765)
T ss_pred HHHHHHHHhhcCCceEe-----------------ecC---CCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44444444321110000 000 00012332 24456667788889999999999988874
Q ss_pred cCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcch
Q 048358 380 HHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPD-AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGN 454 (541)
Q Consensus 380 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 454 (541)
.|.+...+..+...+...|++++|++.+++. ...|+ ...+......+...|++++|..+++++++..|+++.+
T Consensus 389 --~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 389 --APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 4667778888888999999999999999887 56675 4566666667888899999999999999999988743
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.9e-20 Score=177.70 Aligned_cols=284 Identities=14% Similarity=0.039 Sum_probs=133.4
Q ss_pred HHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCc---hhhHHHHHHHH
Q 048358 86 AYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSH---SITENALLDLY 162 (541)
Q Consensus 86 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~l~~~~ 162 (541)
.+...|++++|+..|+++.+.+ +.+..++..+...+...|+++.|..+++.+...+..++ ..++..+...|
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~ 117 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD------PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDY 117 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC------cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 3445566666666666666553 34445566666666666666666666666655321111 13445555566
Q ss_pred HcCCChHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCCc--------chHHHHHHHHHhcCChH
Q 048358 163 GKCDELIEAHKVFEEMTD---RDIVAWNNLISGYARLGQMKKARMLFDKMPYTTI--------VSWTAMISGYTHIGSYA 231 (541)
Q Consensus 163 ~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~l~~~~~~~g~~~ 231 (541)
.+.|++++|..+|+++.+ .+..++..++..+.+.|++++|.+.++.+...++ ..+..+...+...|+++
T Consensus 118 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 118 LKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD 197 (389)
T ss_pred HHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence 666666666666665543 2233444444444444444444444444422110 12333444455555555
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccC
Q 048358 232 EALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMV 311 (541)
Q Consensus 232 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 311 (541)
+|...|+++.+.. +.+...+..+...+...|++++|.++++.+.+.+......+++.++.+|...|++++|...++++.
T Consensus 198 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 198 AARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555554432 112233334444444445555555544444443222222334444444444444444444444442
Q ss_pred --CCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc---cCcHHHHHHHHHHhhh
Q 048358 312 --ERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAH---TGFWNEGLMYFDSMKR 378 (541)
Q Consensus 312 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~ 378 (541)
.|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+..++..+++.+.+
T Consensus 277 ~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 277 EEYPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 133333344444444444444444444444443 2444444444433332 2344444444444443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-16 Score=163.16 Aligned_cols=420 Identities=8% Similarity=-0.038 Sum_probs=299.6
Q ss_pred HHHHHcCCChHHHHHHHhcCCCCCcc---hHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhc
Q 048358 53 IDVCNSGGDLAYASLLFKQVKEPNVF---LYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAG 129 (541)
Q Consensus 53 ~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~ 129 (541)
+-...+.|+++.|+..|++..+.++. ....++..+...|+.++|+..+++..... +........+...+..
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~------n~~~~~llalA~ly~~ 114 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM------NISSRGLASAARAYRN 114 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC------CCCHHHHHHHHHHHHH
Confidence 34467889999999999998874444 47888889999999999999999987311 2223333333568888
Q ss_pred cCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHh
Q 048358 130 LLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTD--RDIVAWNNLISGYARLGQMKKARMLFD 207 (541)
Q Consensus 130 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~ 207 (541)
.|+++.|.++++++++..+ -+...+..++..+...++.++|++.++++.. |+...+..++..+...++..+|++.++
T Consensus 115 ~gdyd~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~e 193 (822)
T PRK14574 115 EKRWDQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASS 193 (822)
T ss_pred cCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHH
Confidence 8999999999999999763 3567777888899999999999999999987 444444334344444566656999998
Q ss_pred cCCC--C-CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHH--HHHHHHHc---------cCChHH---HHH
Q 048358 208 KMPY--T-TIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIV--SVLPACAQ---------LGSLEL---GEW 270 (541)
Q Consensus 208 ~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~--~ll~~~~~---------~~~~~~---a~~ 270 (541)
++.. | +...+..+..+..+.|-...|.++..+-... +.+...-.. ..+.-..+ ..++.. +..
T Consensus 194 kll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala 272 (822)
T PRK14574 194 EAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALA 272 (822)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH
Confidence 8863 3 4567788888889999998988777663321 122211110 00111111 122323 344
Q ss_pred HHHHHHHh-CC-CccHhH----HHHHHHHHHhcCCHHHHHHHHHccCCC----ChhHHHHHHHHHHhcCChHHHHHHHHH
Q 048358 271 IHMYCDKN-HL-LRRTVI----CNALIEMYIKCGCINQASQLFDQMVER----DVVSWSTVIGGLANHGKAHKAIHLFHE 340 (541)
Q Consensus 271 ~~~~~~~~-~~-~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~ 340 (541)
-++.+... +. ++.... ..-.+-++...|++.++++.|+.+..+ ...+-..+.++|...+++++|..+|+.
T Consensus 273 ~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~ 352 (822)
T PRK14574 273 DYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSS 352 (822)
T ss_pred HHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 44444432 11 222122 223455677889999999999998643 345667788999999999999999999
Q ss_pred HHhCC-----CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcC----------CCCcH---hHHHHHHHHHHhcCCH
Q 048358 341 MQRLK-----VPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHH----------IEHKI---EHYGCLVDLLGRAGRL 402 (541)
Q Consensus 341 m~~~~-----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----------~~~~~---~~~~~l~~~~~~~g~~ 402 (541)
+.... .+++......|..++...+++++|..+++.+.+... -.|+. ..+..++..+...|+.
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl 432 (822)
T PRK14574 353 LYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDL 432 (822)
T ss_pred HhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCH
Confidence 86643 123344457788899999999999999999987311 01221 2344567778889999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048358 403 DQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 403 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 480 (541)
.+|.+.++++ ...| |......+...+...|.+.+|++.++.+..++|++..+....+.++...|+|++|..+.+.+.+
T Consensus 433 ~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 433 PTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 9999999998 4445 7788888888899999999999999998889999999999999999999999999999988765
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.1e-17 Score=158.53 Aligned_cols=428 Identities=14% Similarity=0.083 Sum_probs=317.1
Q ss_pred CCchhHHHHHHHHHHcCCChHHHHHHHhcCCCC------CcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCC
Q 048358 43 SQSNFLVTKMIDVCNSGGDLAYASLLFKQVKEP------NVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPD 116 (541)
Q Consensus 43 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~ 116 (541)
.-+|.+.+.|.+.|--.|++..+..+...+... -..+|-.+.++|-..|++++|...|....+.. |+
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~-------~d 339 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD-------ND 339 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC-------CC
Confidence 457888888888888889998888888776542 23457788888899999999999888887764 33
Q ss_pred --cccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCC----ChHHHHHHHhhcCCC---ChhhHH
Q 048358 117 --KFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCD----ELIEAHKVFEEMTDR---DIVAWN 187 (541)
Q Consensus 117 --~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~---~~~~~~ 187 (541)
...+.-|.+.+...|+++.+...|+.+.+.. +.+..+...|...|+..+ ..+.|..++.+...+ |...|-
T Consensus 340 ~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l 418 (1018)
T KOG2002|consen 340 NFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWL 418 (1018)
T ss_pred CccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHH
Confidence 3445557788888899999999999888874 456677777777777765 567777777777653 556777
Q ss_pred HHHHHHHhcCCHH------HHHHHHhc-CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCh------HH
Q 048358 188 NLISGYARLGQMK------KARMLFDK-MPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMV---GIEPDE------IS 251 (541)
Q Consensus 188 ~l~~~~~~~~~~~------~A~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---~~~p~~------~~ 251 (541)
.+...+....-+. .|..++.. +....+...|.+...+...|++++|...|...... ...+|. .+
T Consensus 419 ~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~ 498 (1018)
T KOG2002|consen 419 ELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTL 498 (1018)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHH
Confidence 7766666544433 33333322 22456678899999999999999999999887655 223333 23
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHhc
Q 048358 252 IVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE---RDVVSWSTVIGGLANH 328 (541)
Q Consensus 252 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~ 328 (541)
--.+....-..++.+.|.+.|..+.+.... =+..|-.++.+....+...+|...++.... .|+..+..+...|...
T Consensus 499 ~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k 577 (1018)
T KOG2002|consen 499 KYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKK 577 (1018)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhh
Confidence 334555566777899999999988876421 133444444344445778888888888744 5777888888899988
Q ss_pred CChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHhc------------cCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHH
Q 048358 329 GKAHKAIHLFHEMQRL-KVPPNDITFIGLLSACAH------------TGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDL 395 (541)
Q Consensus 329 ~~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~~~------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 395 (541)
.++..|.+-|....+. ...+|..+...|.+.|.. .+..++|+++|.++.+. -|.|...-|.+.-.
T Consensus 578 ~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~--dpkN~yAANGIgiV 655 (1018)
T KOG2002|consen 578 SEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN--DPKNMYAANGIGIV 655 (1018)
T ss_pred hhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc--Ccchhhhccchhhh
Confidence 8888888877766543 223677777777775543 24578899999999874 36777778889999
Q ss_pred HHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccC--CCCcchHHHHHHHHHhcCCHHHH
Q 048358 396 LGRAGRLDQALNIIEEM--PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLE--PEDTGNYVLLSNIYAKHGRWEDV 471 (541)
Q Consensus 396 ~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A 471 (541)
+...|++.+|..+|... .......+|..+.++|...|++..|+++|+...+.. .+++.+..+|++++.+.|.+.+|
T Consensus 656 LA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~ea 735 (1018)
T KOG2002|consen 656 LAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEA 735 (1018)
T ss_pred hhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHH
Confidence 99999999999999988 223456789999999999999999999999998754 45788999999999999999999
Q ss_pred HHHHHHhhhC
Q 048358 472 SRMRKLIRSK 481 (541)
Q Consensus 472 ~~~~~~m~~~ 481 (541)
.+.....+..
T Consensus 736 k~~ll~a~~~ 745 (1018)
T KOG2002|consen 736 KEALLKARHL 745 (1018)
T ss_pred HHHHHHHHHh
Confidence 9988776654
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=5e-16 Score=158.87 Aligned_cols=418 Identities=11% Similarity=0.033 Sum_probs=315.0
Q ss_pred cChhHHHHHHHHHHHhccCCch--hHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHH---HHHHHcCCChhHHHHH
Q 048358 25 ENLIELKKIHTQILKYLLSQSN--FLVTKMIDVCNSGGDLAYASLLFKQVKEPNVFLYNAM---IRAYTNNHLYGLAINL 99 (541)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l---l~~~~~~g~~~~A~~~ 99 (541)
++...+...+++.++.. |+. .++ .++..+...|+.++|+..+++...|+...+..+ ...+...|++++|+++
T Consensus 48 Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiel 124 (822)
T PRK14574 48 GDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALAL 124 (822)
T ss_pred CCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34445555566665554 443 344 888999999999999999999987755554443 3467788999999999
Q ss_pred HHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcC
Q 048358 100 YKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMT 179 (541)
Q Consensus 100 ~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 179 (541)
|+++.+.. +.++..+..++..+...++.++|++.++.+... .|+...+..++..+...++..+|++.++++.
T Consensus 125 y~kaL~~d------P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 125 WQSSLKKD------PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHhhC------CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 99999986 556777778888899999999999999999875 4455555555555555677767999999997
Q ss_pred C--C-ChhhHHHHHHHHHhcCCHHHHHHHHhcCCCC-CcchHH----HHHHHHHhc---------CC---hHHHHHHHHH
Q 048358 180 D--R-DIVAWNNLISGYARLGQMKKARMLFDKMPYT-TIVSWT----AMISGYTHI---------GS---YAEALDVFRQ 239 (541)
Q Consensus 180 ~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~----~l~~~~~~~---------g~---~~~A~~~~~~ 239 (541)
+ | +...+..+.....+.|-...|.++..+-+.- +...+. ..+.-.++. .+ .+.|+.-++.
T Consensus 197 ~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~ 276 (822)
T PRK14574 197 RLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQN 276 (822)
T ss_pred HhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 6 4 5667788899999999999999998875521 111111 111111211 12 3445666666
Q ss_pred HHHC-CCCCChH-----HHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCC
Q 048358 240 MQMV-GIEPDEI-----SIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVER 313 (541)
Q Consensus 240 m~~~-~~~p~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 313 (541)
+... +-.|... ...-.+-++...++..++.+.++.+...+.+....+-..+.++|...++.++|..+|.++..+
T Consensus 277 l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~ 356 (822)
T PRK14574 277 LLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYS 356 (822)
T ss_pred HHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 6542 2224322 223456678899999999999999999987766778899999999999999999999998442
Q ss_pred ---------ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-----------CCCH---HHHHHHHHHHhccCcHHHHH
Q 048358 314 ---------DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKV-----------PPND---ITFIGLLSACAHTGFWNEGL 370 (541)
Q Consensus 314 ---------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-----------~p~~---~~~~~l~~~~~~~g~~~~a~ 370 (541)
+......|.-+|...+++++|..+++.+.+.-. .||+ ..+..++..+...|++.+|+
T Consensus 357 ~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae 436 (822)
T PRK14574 357 DGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQ 436 (822)
T ss_pred cccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHH
Confidence 222346788999999999999999999987321 1222 13345677788999999999
Q ss_pred HHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccC
Q 048358 371 MYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPD-AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLE 448 (541)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 448 (541)
+.++++... -|-|......+.+.+...|.+.+|.+.++.. ...|+ ..+....+.++...+++++|..+.+.+.+..
T Consensus 437 ~~le~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 437 KKLEDLSST--APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 999999874 4778899999999999999999999999877 56674 5677778888999999999999999999999
Q ss_pred CCCcchH
Q 048358 449 PEDTGNY 455 (541)
Q Consensus 449 ~~~~~~~ 455 (541)
|+++.+-
T Consensus 515 Pe~~~~~ 521 (822)
T PRK14574 515 PEDIPSQ 521 (822)
T ss_pred CCchhHH
Confidence 9987443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.7e-17 Score=158.69 Aligned_cols=434 Identities=11% Similarity=0.071 Sum_probs=222.6
Q ss_pred CCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhh
Q 048358 75 PNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSIT 154 (541)
Q Consensus 75 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 154 (541)
.|+...+.|.+.|...|+++.+..+...+....... ..-...|-.+.+++-..|+++.|...|.+..+....--...
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~---~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~ 344 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENK---SIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLP 344 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhh---HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccc
Confidence 455555555555666666666666665555432100 11223455566666666666666666655555432111223
Q ss_pred HHHHHHHHHcCCChHHHHHHHhhcCC--C-ChhhHHHHHHHHHhcC----CHHHHHHHHhcCCCC---CcchHHHHHHHH
Q 048358 155 ENALLDLYGKCDELIEAHKVFEEMTD--R-DIVAWNNLISGYARLG----QMKKARMLFDKMPYT---TIVSWTAMISGY 224 (541)
Q Consensus 155 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~----~~~~A~~~~~~~~~~---~~~~~~~l~~~~ 224 (541)
+..|...|.+.|+++.+...|+++.. | +..+...+...|...+ ..+.|..++.....+ |...|-.+...+
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLL 424 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 33455566666666666666665543 2 2233344444444433 334455554444432 333444444444
Q ss_pred HhcCChHHHHHHHHHH----HHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHh---CCCc------cHhHHHHHH
Q 048358 225 THIGSYAEALDVFRQM----QMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKN---HLLR------RTVICNALI 291 (541)
Q Consensus 225 ~~~g~~~~A~~~~~~m----~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~------~~~~~~~l~ 291 (541)
....-+ .++..|... ...+-++.....+.+.......|.++.|...|..+... ...+ +..+-..+.
T Consensus 425 e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla 503 (1018)
T KOG2002|consen 425 EQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA 503 (1018)
T ss_pred HhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence 333222 224444332 23333455555666666666666666666666555443 1111 111222345
Q ss_pred HHHHhcCCHHHHHHHHHccCCCChh---HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHH
Q 048358 292 EMYIKCGCINQASQLFDQMVERDVV---SWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNE 368 (541)
Q Consensus 292 ~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 368 (541)
.++...++.+.|.+.|..+.+..+. .|--++......+...+|..+++.....+ ..|+..+..+...+.+...+..
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~ 582 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKP 582 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcc
Confidence 5555555666666666666442221 22222222223355666666666655543 3344444445555556566666
Q ss_pred HHHHHHHhhhhcCCCCcHhHHHHHHHHHHh------------cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCH
Q 048358 369 GLMYFDSMKRDHHIEHKIEHYGCLVDLLGR------------AGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNL 434 (541)
Q Consensus 369 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~ 434 (541)
|..-|..+.+.....+|+.+.-.|.+.|.+ .+..++|+++|.+. ...| |...-+.+...++..|++
T Consensus 583 a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~ 662 (1018)
T KOG2002|consen 583 AKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRF 662 (1018)
T ss_pred cccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCc
Confidence 666555554432223444444444443332 23455666666655 3444 455556666666666777
Q ss_pred HHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHH
Q 048358 435 EIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDI 514 (541)
Q Consensus 435 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 514 (541)
.+|..+|.+..+-..+.+.+|..++.+|..+|+|-.|+++|+.....-. ..++..+
T Consensus 663 ~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~------------------------~~~~~~v 718 (1018)
T KOG2002|consen 663 SEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFY------------------------KKNRSEV 718 (1018)
T ss_pred hHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc------------------------ccCCHHH
Confidence 7777777666665555566677777777777777777777666654422 2345566
Q ss_pred HHHHHHHHHHHhcccCCcccccc
Q 048358 515 FWLLELLALHQDRAKDVIDIMYE 537 (541)
Q Consensus 515 ~~~l~~~~~~~~~~~~a~~~~~~ 537 (541)
...|++++.+-|+..++.+....
T Consensus 719 l~~Lara~y~~~~~~eak~~ll~ 741 (1018)
T KOG2002|consen 719 LHYLARAWYEAGKLQEAKEALLK 741 (1018)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHH
Confidence 66777777776666665554443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-16 Score=142.89 Aligned_cols=410 Identities=13% Similarity=0.101 Sum_probs=287.6
Q ss_pred chhHHHHHHHHHHcCCChHHHHHHHhcCCC----CCcchH-HHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCc--
Q 048358 45 SNFLVTKMIDVCNSGGDLAYASLLFKQVKE----PNVFLY-NAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDK-- 117 (541)
Q Consensus 45 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~-~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~-- 117 (541)
+-.+...|.+-|.......+|+..++-+.+ ||.... ..+...+.+.+++.+|+..|+..+.. .|+.
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq-------vpsink 272 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ-------VPSINK 272 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh-------ccccch
Confidence 344555566777778888999999988875 444332 23456678888999999999877765 3332
Q ss_pred c----cHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCC-------------
Q 048358 118 F----TLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTD------------- 180 (541)
Q Consensus 118 ~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------- 180 (541)
. ..+.+.-.+.+.|.++.|...|+...+. .|+..+--.|+-++..-|+.++..+.|.+|..
T Consensus 273 ~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~ 350 (840)
T KOG2003|consen 273 DMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKE 350 (840)
T ss_pred hhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCC
Confidence 2 2333444567889999999999998875 46766655666677778999999999988864
Q ss_pred ---CChhhHHH-----HHHHHHhcCC--HHHHHHHHhcC----CCCCc-------------chHHH--------HHHHHH
Q 048358 181 ---RDIVAWNN-----LISGYARLGQ--MKKARMLFDKM----PYTTI-------------VSWTA--------MISGYT 225 (541)
Q Consensus 181 ---~~~~~~~~-----l~~~~~~~~~--~~~A~~~~~~~----~~~~~-------------~~~~~--------l~~~~~ 225 (541)
|+....+. .+.-+.+.+. -++++-.--++ ..|+- ..+.. -..-+.
T Consensus 351 ~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~l 430 (840)
T KOG2003|consen 351 KDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELL 430 (840)
T ss_pred cCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHH
Confidence 12111111 1122222111 11221111111 12211 00111 122466
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChH---------------------HHHHH---------------HHHHHccCChHHHH
Q 048358 226 HIGSYAEALDVFRQMQMVGIEPDEI---------------------SIVSV---------------LPACAQLGSLELGE 269 (541)
Q Consensus 226 ~~g~~~~A~~~~~~m~~~~~~p~~~---------------------~~~~l---------------l~~~~~~~~~~~a~ 269 (541)
+.|+++.|+++++-.....-+.-.. .|..+ -+.....|++++|.
T Consensus 431 k~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~ 510 (840)
T KOG2003|consen 431 KNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAA 510 (840)
T ss_pred hccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHH
Confidence 7788888877776665432111111 11100 01112357888898
Q ss_pred HHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHcc---CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 048358 270 WIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQM---VERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKV 346 (541)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 346 (541)
..+++.....-.-....|| +.-.+...|++++|+.+|-++ ...+..+...+...|-...+..+|++++.+.... +
T Consensus 511 ~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-i 588 (840)
T KOG2003|consen 511 EFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-I 588 (840)
T ss_pred HHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-C
Confidence 8888888765444333444 445677889999999998776 4467778888889999999999999999887665 5
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 048358 347 PPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPDAKIWGSLL 425 (541)
Q Consensus 347 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 425 (541)
+.|+.....|...|-+.|+-..|.+.+-.--+ -+|.+..+...|...|....-+++|+.+|++. -++|+..-|..++
T Consensus 589 p~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmi 666 (840)
T KOG2003|consen 589 PNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMI 666 (840)
T ss_pred CCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHH
Confidence 77888899999999999999999998776665 36888999999999999999999999999998 6889999999998
Q ss_pred HH-HhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 048358 426 SS-CRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGR 467 (541)
Q Consensus 426 ~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 467 (541)
.. +.+.|++.+|.++|+......|.+.+.+..|++.+...|.
T Consensus 667 asc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 667 ASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 87 5789999999999999999999999999999999888775
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.5e-15 Score=143.57 Aligned_cols=352 Identities=14% Similarity=0.170 Sum_probs=204.9
Q ss_pred CChHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHhcC---CCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 048358 166 DELIEAHKVFEEMTD---RDIVAWNNLISGYARLGQMKKARMLFDKM---PYTTIVSWTAMISGYTHIGSYAEALDVFRQ 239 (541)
Q Consensus 166 g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 239 (541)
|++++|.+++.++.. .+..+|..|...|-+.|+.+++...+-.. .+.|...|..+.....+.|++.+|.-.|.+
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~r 232 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSR 232 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 444444444444433 23334444444444444444444433221 223334444444444455555555555555
Q ss_pred HHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHh----HHHHHHHHHHhcCCHHHHHHHHHccCC---
Q 048358 240 MQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTV----ICNALIEMYIKCGCINQASQLFDQMVE--- 312 (541)
Q Consensus 240 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 312 (541)
.++.. +++...+---...|-+.|+...|...+.++.....+.+.. .-...+..+...++-+.|.+.+.....
T Consensus 233 AI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~ 311 (895)
T KOG2076|consen 233 AIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEK 311 (895)
T ss_pred HHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc
Confidence 44442 2232233333344444455555555554444443221211 111223334444444555555544422
Q ss_pred --CChhHHHHHHHHHHhcCChHHHHHHHHHHHhC---------------------------CCCCCHHHHHHHHHHHhcc
Q 048358 313 --RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRL---------------------------KVPPNDITFIGLLSACAHT 363 (541)
Q Consensus 313 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---------------------------~~~p~~~~~~~l~~~~~~~ 363 (541)
.+...++.++..+.+...++.|......+... ++.++... ..++-++.+.
T Consensus 312 ~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L 390 (895)
T KOG2076|consen 312 DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVHL 390 (895)
T ss_pred ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhcc
Confidence 12334555555555555555555555544431 12233333 1222233333
Q ss_pred CcHHHHHHHHHHhhhhc-CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCC---CCCCHHHHHHHHHHHhhcCCHHHHHH
Q 048358 364 GFWNEGLMYFDSMKRDH-HIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMP---MKPDAKIWGSLLSSCRTYSNLEIAVI 439 (541)
Q Consensus 364 g~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~l~~~~~~~~~~~~a~~ 439 (541)
...+....+........ ....+...|.-+.++|.+.|++.+|+.+|..+- ..-+...|..+..+|...|.+++|++
T Consensus 391 ~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e 470 (895)
T KOG2076|consen 391 KERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIE 470 (895)
T ss_pred cccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHH
Confidence 33333333333333321 134456788999999999999999999999982 22357789999999999999999999
Q ss_pred HHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHH
Q 048358 440 AMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLE 519 (541)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~ 519 (541)
.|++++...|++.++...|+..+.+.|+.++|.+.+..+...+....+++.| +....+.....
T Consensus 471 ~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~-----------------~~e~ri~~~r~ 533 (895)
T KOG2076|consen 471 FYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW-----------------EPERRILAHRC 533 (895)
T ss_pred HHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc-----------------cHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987444333345544 55667778899
Q ss_pred HHHHHHhcccCCccccc
Q 048358 520 LLALHQDRAKDVIDIMY 536 (541)
Q Consensus 520 ~~~~~~~~~~~a~~~~~ 536 (541)
.++.++|+.++.+++..
T Consensus 534 d~l~~~gk~E~fi~t~~ 550 (895)
T KOG2076|consen 534 DILFQVGKREEFINTAS 550 (895)
T ss_pred HHHHHhhhHHHHHHHHH
Confidence 99999999888766543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.6e-15 Score=141.93 Aligned_cols=276 Identities=13% Similarity=0.088 Sum_probs=215.6
Q ss_pred CChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC--ccHhHHHHHHHHHHhcCCHHHHHH
Q 048358 228 GSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLL--RRTVICNALIEMYIKCGCINQASQ 305 (541)
Q Consensus 228 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~ 305 (541)
-+..+|+..|.+...+ +.-+......+..+|...+++++++++|+.+.+...- -+..+|.+.+--+-+.=.+.---+
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 3567888888885544 2334455566778899999999999999988875421 356677766643332222221112
Q ss_pred HHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCc
Q 048358 306 LFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHK 385 (541)
Q Consensus 306 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 385 (541)
-+-.+....+.+|.++..+|.-+++.+.|++.|++.++.+ +-...+|+.+..-+.....++.|...|+..... .+.+
T Consensus 412 ~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--~~rh 488 (638)
T KOG1126|consen 412 DLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--DPRH 488 (638)
T ss_pred HHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--Cchh
Confidence 2222334467899999999999999999999999998865 447788888888888889999999999988763 2334
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 048358 386 IEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYA 463 (541)
Q Consensus 386 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 463 (541)
-..|..+...|.++++++.|.-.|+++ .+.| +.+....+...+.+.|+.++|+++++++..++|.|+-.-...+..+.
T Consensus 489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~ 568 (638)
T KOG1126|consen 489 YNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILF 568 (638)
T ss_pred hHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHH
Confidence 455667888899999999999999988 7888 45666677777899999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCcc
Q 048358 464 KHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVID 533 (541)
Q Consensus 464 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 533 (541)
..+++++|+..++++++ +-|++..++.+||.+|.++|+.+.|..
T Consensus 569 ~~~~~~eal~~LEeLk~--------------------------~vP~es~v~~llgki~k~~~~~~~Al~ 612 (638)
T KOG1126|consen 569 SLGRYVEALQELEELKE--------------------------LVPQESSVFALLGKIYKRLGNTDLALL 612 (638)
T ss_pred hhcchHHHHHHHHHHHH--------------------------hCcchHHHHHHHHHHHHHHccchHHHH
Confidence 99999999999999876 468999999999999999998887754
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.5e-13 Score=130.41 Aligned_cols=500 Identities=12% Similarity=0.072 Sum_probs=330.1
Q ss_pred HHHhccChhHHHHHHHHHHHhccCCchhHHHHHHHHHHcCCChHHHHHHHhcCC---CCCcchHHHHHHHHHcCCChhHH
Q 048358 20 ILQSCENLIELKKIHTQILKYLLSQSNFLVTKMIDVCNSGGDLAYASLLFKQVK---EPNVFLYNAMIRAYTNNHLYGLA 96 (541)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~A 96 (541)
++-+.++.+.+..+...+++.. +.+...|..|...|-..|+.+++...+-... ..|...|..+.......|++++|
T Consensus 148 ~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHH
Confidence 4446688889999999999877 5688899999999999999999998875543 35667899999999999999999
Q ss_pred HHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHH----HHHHHHHcCCChHHHH
Q 048358 97 INLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITEN----ALLDLYGKCDELIEAH 172 (541)
Q Consensus 97 ~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~----~l~~~~~~~g~~~~A~ 172 (541)
.-.|.+.++.. +++...+---...|-+.|+...|...+.++....++.|..-.. ..+..+...++-+.|.
T Consensus 227 ~~cy~rAI~~~------p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~ 300 (895)
T KOG2076|consen 227 RYCYSRAIQAN------PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAA 300 (895)
T ss_pred HHHHHHHHhcC------CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 99999999886 6676666666778889999999999999999876533333232 3455666777778888
Q ss_pred HHHhhcCC-----CChhhHHHHHHHHHhcCCHHHHHHHHhcCCC----C----------------------CcchHH---
Q 048358 173 KVFEEMTD-----RDIVAWNNLISGYARLGQMKKARMLFDKMPY----T----------------------TIVSWT--- 218 (541)
Q Consensus 173 ~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~----------------------~~~~~~--- 218 (541)
+.++.... -+...++.++..+.+...++.|......+.. + +..+|.
T Consensus 301 ~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v 380 (895)
T KOG2076|consen 301 KALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV 380 (895)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh
Confidence 88877664 2445778888888888888888776654421 1 111111
Q ss_pred -HHHHHHHhcCChHHHHHHHHHHHHCCCCC--ChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHH
Q 048358 219 -AMISGYTHIGSYAEALDVFRQMQMVGIEP--DEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYI 295 (541)
Q Consensus 219 -~l~~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 295 (541)
.++-++.+....+....+........+.| +...|.-+..++...|++..|..++..+.......+..+|-.+..+|.
T Consensus 381 ~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 381 IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 23334444555555555555555555333 445677788888888888888888888887766666778888888888
Q ss_pred hcCCHHHHHHHHHccCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHhccC
Q 048358 296 KCGCINQASQLFDQMVER---DVVSWSTVIGGLANHGKAHKAIHLFHEMQRL--------KVPPNDITFIGLLSACAHTG 364 (541)
Q Consensus 296 ~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--------~~~p~~~~~~~l~~~~~~~g 364 (541)
..|.++.|...|..+..- +...--.|...+.+.|+.++|.+.+..+... +..|+..........+...|
T Consensus 461 ~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~g 540 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVG 540 (895)
T ss_pred HHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhh
Confidence 888888888888887543 3334455666777888888888888875422 23344443334444455555
Q ss_pred cHHHHHHHHHHhhhh--------------------------------------------------------------cCC
Q 048358 365 FWNEGLMYFDSMKRD--------------------------------------------------------------HHI 382 (541)
Q Consensus 365 ~~~~a~~~~~~~~~~--------------------------------------------------------------~~~ 382 (541)
+.++-+.+-..|... .++
T Consensus 541 k~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~L 620 (895)
T KOG2076|consen 541 KREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGL 620 (895)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccC
Confidence 544322221111100 000
Q ss_pred CCc--HhHHHHHHHHHHhcCCHHHHHHHHHhC-C----CCCCH---HHHHHHHHHHhhcCCHHHHHHHHHHHhcc-----
Q 048358 383 EHK--IEHYGCLVDLLGRAGRLDQALNIIEEM-P----MKPDA---KIWGSLLSSCRTYSNLEIAVIAMEHLLVL----- 447 (541)
Q Consensus 383 ~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~----~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 447 (541)
..+ ...+.-++..+.+.|++++|+.+...+ . ..++. ..-...+.++...+++..|...++.++..
T Consensus 621 siddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~ 700 (895)
T KOG2076|consen 621 SIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYL 700 (895)
T ss_pred cHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhh
Confidence 000 122345666778888899998887776 1 12222 12233445567888999999998888876
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEE---------EEcCEEEEEEeCCCCCCChhHHHHHH
Q 048358 448 EPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLI---------EVNNEVQEFVSGDDTKPFLKDIFWLL 518 (541)
Q Consensus 448 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~p~~~~~~~~l 518 (541)
+|--...|++..+.+.+.|+-.--.+.+......+...++....+ ....++..+...-..+|++|-+-..|
T Consensus 701 ~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~l 780 (895)
T KOG2076|consen 701 DVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCL 780 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 565566777666666666665555555555444433332221111 11222333333337899999999988
Q ss_pred HHHHHHHh
Q 048358 519 ELLALHQD 526 (541)
Q Consensus 519 ~~~~~~~~ 526 (541)
|-.+-++.
T Consensus 781 glafih~a 788 (895)
T KOG2076|consen 781 GLAFIHLA 788 (895)
T ss_pred HHHHHHHH
Confidence 88776544
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.3e-12 Score=119.13 Aligned_cols=365 Identities=12% Similarity=0.089 Sum_probs=239.9
Q ss_pred cHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCC--C-ChhhHHHHHHHHHh
Q 048358 119 TLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTD--R-DIVAWNNLISGYAR 195 (541)
Q Consensus 119 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~ 195 (541)
||..-...|...+.++-+..+|...++. ++.+...|...+..--..|..++-..+|++... | ....|-.....+-.
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~ 596 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWK 596 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHh
Confidence 3333444444444444444444444443 222334444444443444555555555544433 2 23344444555555
Q ss_pred cCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHH
Q 048358 196 LGQMKKARMLFDKMPY---TTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIH 272 (541)
Q Consensus 196 ~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 272 (541)
.|++..|..++.+.-+ .+...|-+-+.....+.++++|..+|.+.... .|+...|..-+..-...+..++|.+++
T Consensus 597 agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rll 674 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLL 674 (913)
T ss_pred cCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHH
Confidence 6777777766665542 23345666666666777777777777776643 566666666666666667777777777
Q ss_pred HHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 048358 273 MYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE--R-DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPN 349 (541)
Q Consensus 273 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 349 (541)
++..+.- +.-...|-.+.+.+.+.++.+.|.+.|..-.+ | .+..|-.|...--+.|..-.|..+|++..-.+ |-|
T Consensus 675 Ee~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~ 752 (913)
T KOG0495|consen 675 EEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKN 752 (913)
T ss_pred HHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCc
Confidence 7766642 22244666777777777777777777766544 3 34456666666666777777877877777666 666
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 048358 350 DITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKPDAKIWGSLLSSCR 429 (541)
Q Consensus 350 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 429 (541)
...|...|+.-.+.|+.+.|..+..+..+. .+.+...|..-|....+.++-......+++.. .|+.....+...+.
T Consensus 753 ~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lfw 828 (913)
T KOG0495|consen 753 ALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFW 828 (913)
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHH
Confidence 777777777777778888887777777764 36666677777777777777666666666554 45566666777788
Q ss_pred hcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEE
Q 048358 430 TYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEV 494 (541)
Q Consensus 430 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 494 (541)
...++++|.+-|+++++.+|++.++|..+-..+.+.|.-++-.+++++.... .|..|..|+-+
T Consensus 829 ~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~av 891 (913)
T KOG0495|consen 829 SEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAV 891 (913)
T ss_pred HHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHH
Confidence 8899999999999999999999999999999999999999999999988654 34555556433
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-13 Score=123.98 Aligned_cols=388 Identities=12% Similarity=0.090 Sum_probs=257.1
Q ss_pred CcchhhhcCCCCChhhHHHHHHhc---cCh--hHH--H-------------------HHHHHHHHhccCCchhHHHHHHH
Q 048358 1 MAARIGALSIKELEDRFVPILQSC---ENL--IEL--K-------------------KIHTQILKYLLSQSNFLVTKMID 54 (541)
Q Consensus 1 ~~~~m~~~g~~~~~~~~~~~l~~~---~~~--~~~--~-------------------~~~~~~~~~~~~~~~~~~~~l~~ 54 (541)
++.+|++.|+......-..+++-- .+. .-+ + .+-+ +.-.-.+.+..++..+|.
T Consensus 137 lY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAd-L~~E~~PKT~et~s~mI~ 215 (625)
T KOG4422|consen 137 LYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVAD-LLFETLPKTDETVSIMIA 215 (625)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHH-HHHhhcCCCchhHHHHHH
Confidence 367899999988888766666531 111 101 1 1112 222233567889999999
Q ss_pred HHHcCCChHHHHHHHhcCCC----CCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhcc
Q 048358 55 VCNSGGDLAYASLLFKQVKE----PNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGL 130 (541)
Q Consensus 55 ~~~~~~~~~~A~~~~~~~~~----~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~ 130 (541)
.+|+-...+.|.+++++... -+..+||.+|.+-.- ....+++.+|....+ .||..|||.++++.++.
T Consensus 216 Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm-----~Pnl~TfNalL~c~akf 286 (625)
T KOG4422|consen 216 GLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKM-----TPNLFTFNALLSCAAKF 286 (625)
T ss_pred HHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhc-----CCchHhHHHHHHHHHHh
Confidence 99999999999999988764 466778888865432 223778889998887 99999999999999999
Q ss_pred CCchH----HHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHH-HHHHHhhcCC------------CChhhHHHHHHHH
Q 048358 131 LCPSL----GKQIHAHVCKFGLKSHSITENALLDLYGKCDELIE-AHKVFEEMTD------------RDIVAWNNLISGY 193 (541)
Q Consensus 131 ~~~~~----a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~------------~~~~~~~~l~~~~ 193 (541)
|+++. |.+++.+|.+.|++|...+|..++..+.+.++..+ |..++.++.. .+..-|..-+..|
T Consensus 287 g~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic 366 (625)
T KOG4422|consen 287 GKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSIC 366 (625)
T ss_pred cchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHH
Confidence 97764 56788889999999999999999999999888744 4444444421 2445667777788
Q ss_pred HhcCCHHHHHHHHhcCCCC--------C---cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcc
Q 048358 194 ARLGQMKKARMLFDKMPYT--------T---IVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQL 262 (541)
Q Consensus 194 ~~~~~~~~A~~~~~~~~~~--------~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 262 (541)
.+..+.+.|.++..-.... + ..-|..+..+.++....+.-...|+.|.-.-+-|+..+...++++....
T Consensus 367 ~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~ 446 (625)
T KOG4422|consen 367 SSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVA 446 (625)
T ss_pred HHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhc
Confidence 8888888888877655421 1 1346667778888888999999999998887889999999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHh--cCChHHHHHHHHH
Q 048358 263 GSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLAN--HGKAHKAIHLFHE 340 (541)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~ 340 (541)
+.++-.-+++..++..|...+.....-++..+++.. ..|+...-..+-....+ ..-.+.....-.+
T Consensus 447 ~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k------------~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R 514 (625)
T KOG4422|consen 447 NRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK------------LHPLTPEREQLQVAFAKCAADIKEAYESQPIR 514 (625)
T ss_pred CcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC------------CCCCChHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 999999999998888775544443333333333322 11211111111111111 0111111222334
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHH---HHHHHHHhcCCHHHHHHHHHhC
Q 048358 341 MQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYG---CLVDLLGRAGRLDQALNIIEEM 412 (541)
Q Consensus 341 m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~ 412 (541)
|.+..++| ...+.++-.+.+.|..++|.++|..+.+.+.-.|.....+ .+++.-.+..+...|...++-+
T Consensus 515 ~r~~~~~~--t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 515 QRAQDWPA--TSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HHhccCCh--hHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 44444333 3445555566777888888887777755443334333344 4555556667777777777766
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.8e-17 Score=147.68 Aligned_cols=254 Identities=17% Similarity=0.201 Sum_probs=58.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHH-HHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcC
Q 048358 220 MISGYTHIGSYAEALDVFRQMQMVGIEPDEISIV-SVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCG 298 (541)
Q Consensus 220 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 298 (541)
+...+.+.|++++|++++++......+|+...|- .+...+...++.+.|...++.+...+.. ++..+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 3455556666666666664433332123322222 2222333444555555555555443322 23334444443 3444
Q ss_pred CHHHHHHHHHccCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 048358 299 CINQASQLFDQMVE--RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLK-VPPNDITFIGLLSACAHTGFWNEGLMYFDS 375 (541)
Q Consensus 299 ~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 375 (541)
++++|.+++....+ +++..+...+..+...++++++..+++.+.... .+++...|..+...+.+.|+.++|+..+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55555444443311 233344444444444455555555544443321 123333444444444445555555555555
Q ss_pred hhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcc
Q 048358 376 MKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM--PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTG 453 (541)
Q Consensus 376 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 453 (541)
..+.. |.+......++..+...|+.+++.++++.. ....|...+..+..++...|+.++|...++++.+..|+|+.
T Consensus 172 al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 172 ALELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 44421 223444444444444445544444444433 11122333444444444445555555555555544455555
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHH
Q 048358 454 NYVLLSNIYAKHGRWEDVSRMRKL 477 (541)
Q Consensus 454 ~~~~l~~~~~~~g~~~~A~~~~~~ 477 (541)
....++.++.+.|+.++|.++.++
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHHHHHHHT--------------
T ss_pred cccccccccccccccccccccccc
Confidence 555555555555555555544443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3e-12 Score=114.83 Aligned_cols=69 Identities=9% Similarity=-0.089 Sum_probs=44.3
Q ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccC---CCCcchHH---HHHHHHHhcCCHHHHHHHHHHhhhCCCcc
Q 048358 416 PDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLE---PEDTGNYV---LLSNIYAKHGRWEDVSRMRKLIRSKSMKK 485 (541)
Q Consensus 416 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 485 (541)
-.....+...-.+.+.|..++|.+++....+.+ |..+ ..+ -+.+.-.+.++..+|..+++-|...+...
T Consensus 520 ~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p-~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~ 594 (625)
T KOG4422|consen 520 WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSP-LLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPI 594 (625)
T ss_pred CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchh
Confidence 345556666666778888888888888775433 3322 333 34444556677888888888887666543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-13 Score=124.28 Aligned_cols=366 Identities=11% Similarity=0.058 Sum_probs=276.5
Q ss_pred CCCchhhHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchH-HHHHHHHHh
Q 048358 148 LKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSW-TAMISGYTH 226 (541)
Q Consensus 148 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~l~~~~~~ 226 (541)
...|...+-.....+-+.|..+.|...|......-+..|.+.+....-..+.+.+..+...+...+...- -.+..++..
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~e 239 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQE 239 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHH
Confidence 3445555555556667788888899888887765555566555555555556665555545443322211 124456666
Q ss_pred cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC--ccHhHHHHHHHHHHhcCCHHHHH
Q 048358 227 IGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLL--RRTVICNALIEMYIKCGCINQAS 304 (541)
Q Consensus 227 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~ 304 (541)
....+++..-.......|++-+...-+....+.-...++++|+.+|+++.+...- .|..+|..++-.-....++.---
T Consensus 240 l~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA 319 (559)
T KOG1155|consen 240 LHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLA 319 (559)
T ss_pred HHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHH
Confidence 7788888888888888887666666666666677889999999999999988422 35667776663333222222222
Q ss_pred HHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCC
Q 048358 305 QLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEH 384 (541)
Q Consensus 305 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 384 (541)
...-.+-+--+.|..++.+-|.-.++.++|...|++..+.+ |.....|+.+.+-|....+...|++-++...+- -|.
T Consensus 320 ~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi--~p~ 396 (559)
T KOG1155|consen 320 QNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI--NPR 396 (559)
T ss_pred HHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc--Cch
Confidence 22223344456677888888999999999999999999976 556677888888999999999999999999974 377
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 048358 385 KIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIY 462 (541)
Q Consensus 385 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 462 (541)
|-..|-.|..+|.-.+...=|+-+|++. ..+| |...|..|..+|.+.++.++|+..|+++...+..+...+..|++.|
T Consensus 397 DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLy 476 (559)
T KOG1155|consen 397 DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLY 476 (559)
T ss_pred hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 8889999999999999999999999998 6777 7899999999999999999999999999998877888999999999
Q ss_pred HhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCcccc
Q 048358 463 AKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIM 535 (541)
Q Consensus 463 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 535 (541)
.+.++.++|...+++..+.-. ......|+...+..-|++-+...++.++|..+.
T Consensus 477 e~l~d~~eAa~~yek~v~~~~-------------------~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya 530 (559)
T KOG1155|consen 477 EELKDLNEAAQYYEKYVEVSE-------------------LEGEIDDETIKARLFLAEYFKKMKDFDEASYYA 530 (559)
T ss_pred HHHHhHHHHHHHHHHHHHHHH-------------------hhcccchHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 999999999999998765310 011256777778777999888999888887644
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.2e-14 Score=135.51 Aligned_cols=248 Identities=13% Similarity=0.096 Sum_probs=133.9
Q ss_pred HccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC--C-ChhHHHHHHHHHHhcCChHHHHH
Q 048358 260 AQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE--R-DVVSWSTVIGGLANHGKAHKAIH 336 (541)
Q Consensus 260 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~ 336 (541)
.+.|+++.+...+..+.+....+...........+...|+++.|...++.+.+ | ++.....+...|.+.|++++|.+
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~ 208 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLD 208 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHH
Confidence 45555555555555554432111111111224555666666666666665533 2 44455556666666666666666
Q ss_pred HHHHHHhCCCCCCH-------HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHH
Q 048358 337 LFHEMQRLKVPPND-------ITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNII 409 (541)
Q Consensus 337 ~~~~m~~~~~~p~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 409 (541)
++..+.+.+..+.. .+|..++.......+.+...++++.+.+. .+.++.....+...+...|+.++|.+.+
T Consensus 209 ~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~--~~~~~~~~~~~A~~l~~~g~~~~A~~~L 286 (398)
T PRK10747 209 ILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK--TRHQVALQVAMAEHLIECDDHDTAQQII 286 (398)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH--HhCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 66666665432211 12222233333334445555555555442 2445555666666666667777766666
Q ss_pred HhC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCc
Q 048358 410 EEM-PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPG 488 (541)
Q Consensus 410 ~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 488 (541)
++. ...|+.... ++.+....++.+++.+..++..+..|+|+..+..++..+.+.|+|++|.+.|++..+.
T Consensus 287 ~~~l~~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~------- 357 (398)
T PRK10747 287 LDGLKRQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ------- 357 (398)
T ss_pred HHHHhcCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------
Confidence 665 333444222 2223334466666666666666666666666666777777777777777666666542
Q ss_pred eeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCccccccc
Q 048358 489 CSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMYED 538 (541)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 538 (541)
+|++ ..+..|+.++.++|+.++|.+.+.+.
T Consensus 358 -------------------~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 358 -------------------RPDA-YDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred -------------------CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3443 33456666666666666666555543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.7e-16 Score=144.75 Aligned_cols=252 Identities=14% Similarity=0.182 Sum_probs=110.9
Q ss_pred HHHHHHHhcCCHHHHHHHHhcC-C----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcc
Q 048358 188 NLISGYARLGQMKKARMLFDKM-P----YTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQL 262 (541)
Q Consensus 188 ~l~~~~~~~~~~~~A~~~~~~~-~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 262 (541)
.+...+.+.|++++|.++++.. . ..|+..|..+.......++++.|...++++...+ +-+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 4577888999999999999543 2 2355677777888888999999999999998765 2245556666666 788
Q ss_pred CChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccC-----CCChhHHHHHHHHHHhcCChHHHHHH
Q 048358 263 GSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMV-----ERDVVSWSTVIGGLANHGKAHKAIHL 337 (541)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~ 337 (541)
+++++|..++....+.. +++..+..++..+.+.++++++..+++.+. ..+...|..+...+.+.|+.++|+..
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999988766543 456677888899999999999999998852 34777889999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC
Q 048358 338 FHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP 416 (541)
Q Consensus 338 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 416 (541)
+++..+.. |.|......++..+...|+.+++.++++...+.. +.+...+..+..+|...|++++|+.+|++. ...|
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 99999875 4467788889999999999999999999988753 566677889999999999999999999998 4445
Q ss_pred -CHHHHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 048358 417 -DAKIWGSLLSSCRTYSNLEIAVIAMEHLLV 446 (541)
Q Consensus 417 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 446 (541)
|+.+...+..++...|+.++|.++..++.+
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 778888889999999999999999888764
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.2e-11 Score=113.99 Aligned_cols=428 Identities=12% Similarity=0.070 Sum_probs=312.3
Q ss_pred CCChHHHHHHHhcCCC--C-CcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchH
Q 048358 59 GGDLAYASLLFKQVKE--P-NVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSL 135 (541)
Q Consensus 59 ~~~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 135 (541)
....++|+-++.+..+ | +...|. +|++-.-++.|..+++...+.= +.+...|.+-...--..|+.+.
T Consensus 389 lE~~~darilL~rAveccp~s~dLwl----AlarLetYenAkkvLNkaRe~i------ptd~~IWitaa~LEE~ngn~~m 458 (913)
T KOG0495|consen 389 LEEPEDARILLERAVECCPQSMDLWL----ALARLETYENAKKVLNKAREII------PTDREIWITAAKLEEANGNVDM 458 (913)
T ss_pred ccChHHHHHHHHHHHHhccchHHHHH----HHHHHHHHHHHHHHHHHHHhhC------CCChhHHHHHHHHHHhcCCHHH
Confidence 3556667777777665 2 333333 4556666788888888887752 6777888877777778888888
Q ss_pred HHHHHHHHH----HhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCC------CChhhHHHHHHHHHhcCCHHHHHHH
Q 048358 136 GKQIHAHVC----KFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTD------RDIVAWNNLISGYARLGQMKKARML 205 (541)
Q Consensus 136 a~~~~~~~~----~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~ 205 (541)
...+++..+ ..|+..+..-|-.=...|-+.|..-.+..+...... .-..+|..-...|.+.+.++-|..+
T Consensus 459 v~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAV 538 (913)
T KOG0495|consen 459 VEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAV 538 (913)
T ss_pred HHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHH
Confidence 877766544 457777777777777777777777777766666543 2235888888889999999999988
Q ss_pred HhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCc
Q 048358 206 FDKMPY---TTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLR 282 (541)
Q Consensus 206 ~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 282 (541)
|....+ .+...|...+..--..|..++-..+|++....- +-....+.......-..|+...|..++..+.+... .
T Consensus 539 ya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p-n 616 (913)
T KOG0495|consen 539 YAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP-N 616 (913)
T ss_pred HHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-C
Confidence 887764 344677777777777888889999999988762 33444455555666778999999999998888763 3
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHccC--CCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048358 283 RTVICNALIEMYIKCGCINQASQLFDQMV--ERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSAC 360 (541)
Q Consensus 283 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 360 (541)
+...|-.-+........++.|+.+|.+.. .++...|.--+...-..+..++|.+++++.++. .+.-...|..+.+.+
T Consensus 617 seeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~ 695 (913)
T KOG0495|consen 617 SEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIE 695 (913)
T ss_pred cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHH
Confidence 67788888888888999999999998874 456667777777777788899999999888775 233455677788888
Q ss_pred hccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhcCCHHHHH
Q 048358 361 AHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMP-MKP-DAKIWGSLLSSCRTYSNLEIAV 438 (541)
Q Consensus 361 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~ 438 (541)
...++++.|...|..-.+ ..|..+..|..|...-.+.|..-+|..++++.. ..| +...|...+..-.+.|+.+.|.
T Consensus 696 e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~ 773 (913)
T KOG0495|consen 696 EQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAE 773 (913)
T ss_pred HHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHH
Confidence 888999999988887776 346677788888888888899999999998883 234 6788888888888999999999
Q ss_pred HHHHHHhccCCCC------------------------------cchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCc
Q 048358 439 IAMEHLLVLEPED------------------------------TGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPG 488 (541)
Q Consensus 439 ~~~~~~~~~~~~~------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 488 (541)
.++.++++--|.+ +.++...+..+....++++|.+.|.+..
T Consensus 774 ~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Rav--------- 844 (913)
T KOG0495|consen 774 LLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAV--------- 844 (913)
T ss_pred HHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 8888888766655 4444444555555555555555555544
Q ss_pred eeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhc
Q 048358 489 CSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDR 527 (541)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 527 (541)
+.+|+.+.++.-+=..+.+.|.
T Consensus 845 -----------------k~d~d~GD~wa~fykfel~hG~ 866 (913)
T KOG0495|consen 845 -----------------KKDPDNGDAWAWFYKFELRHGT 866 (913)
T ss_pred -----------------ccCCccchHHHHHHHHHHHhCC
Confidence 3566666666666666666653
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.3e-14 Score=127.09 Aligned_cols=214 Identities=13% Similarity=0.142 Sum_probs=112.0
Q ss_pred cCCHHHHHHHHHccCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 048358 297 CGCINQASQLFDQMVER---DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYF 373 (541)
Q Consensus 297 ~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 373 (541)
.|+.-.|..-|+..+.. +...|--+...|....+.++....|.+..+.+ +-|+.+|..-.+...-.++++.|..-|
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 34444444444444221 11123344444555555555555555555444 344444444444444445555555555
Q ss_pred HHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC-
Q 048358 374 DSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM--PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPE- 450 (541)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~- 450 (541)
++...- -|.+...|-.+.-+..|.+++++++..|++. ++..-+..|+.....+..+++++.|.+.|+.++++.|.
T Consensus 418 ~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~ 495 (606)
T KOG0547|consen 418 QKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPRE 495 (606)
T ss_pred HHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccc
Confidence 555431 1223334444444444555555555555554 22122344444555555555555555555555555544
Q ss_pred -----CcchHHHHHHHHHh-cCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHH
Q 048358 451 -----DTGNYVLLSNIYAK-HGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALH 524 (541)
Q Consensus 451 -----~~~~~~~l~~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 524 (541)
++..+..=+.+..+ .+++..|..++++.. +++|....++..|+.+..+
T Consensus 496 ~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~--------------------------e~Dpkce~A~~tlaq~~lQ 549 (606)
T KOG0547|consen 496 HLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAI--------------------------ELDPKCEQAYETLAQFELQ 549 (606)
T ss_pred ccccccchhhhhhhHhhhchhhhHHHHHHHHHHHH--------------------------ccCchHHHHHHHHHHHHHH
Confidence 33322221111111 144555555554432 5789999999999999999
Q ss_pred HhcccCCcccccccC
Q 048358 525 QDRAKDVIDIMYEDI 539 (541)
Q Consensus 525 ~~~~~~a~~~~~~~i 539 (541)
+|+.++|++.+++.+
T Consensus 550 ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 550 RGKIDEAIELFEKSA 564 (606)
T ss_pred HhhHHHHHHHHHHHH
Confidence 999999999998764
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.6e-13 Score=122.01 Aligned_cols=216 Identities=14% Similarity=0.110 Sum_probs=180.0
Q ss_pred HHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHhcCChHHHH
Q 048358 259 CAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAI 335 (541)
Q Consensus 259 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 335 (541)
+.-.|+.-.+..-|+..++....+ ...|..+..+|...++.++-...|+...+ .|+.+|..-.+.+.-.+++++|.
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHH
Confidence 345678888999999998876554 33477788889999999999999998844 37778998888888899999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 048358 336 HLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PM 414 (541)
Q Consensus 336 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 414 (541)
.=|++.+... +-+...|..+..+..+.+.++++...|++..++ +|.-+..|+.....+..++++++|.+.|+.. .+
T Consensus 415 aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 415 ADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 9999999876 566778888888888999999999999999985 5777888999999999999999999999987 44
Q ss_pred CCC---------HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048358 415 KPD---------AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIR 479 (541)
Q Consensus 415 ~p~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 479 (541)
.|+ +.+-..++.. .=.+++..|.++++++++++|....+|..|+....+.|+.++|+++|++..
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 443 2222222222 223899999999999999999999999999999999999999999999864
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-13 Score=133.96 Aligned_cols=286 Identities=13% Similarity=0.047 Sum_probs=199.7
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHH
Q 048358 225 THIGSYAEALDVFRQMQMVGIEPDE-ISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQA 303 (541)
Q Consensus 225 ~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 303 (541)
...|+++.|.+.+.+..+. .|+. ..+.....+....|+.+.+..++..+.+....+...+.......+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 4568888888888777655 4443 333444566777788888888888876654333333444457888889999999
Q ss_pred HHHHHccCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH-HHHHH---hccCcHHHHHHHHHHh
Q 048358 304 SQLFDQMVE--R-DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIG-LLSAC---AHTGFWNEGLMYFDSM 376 (541)
Q Consensus 304 ~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-l~~~~---~~~g~~~~a~~~~~~~ 376 (541)
...++.+.+ | ++.++..+...+...|++++|.+.+..+.+.++. +...+.. -..++ ...+..+.+.+.+..+
T Consensus 173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 999888844 3 5667888888999999999999999999988743 3333321 11111 2222223333344444
Q ss_pred hhhc--CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHH---HHHHHHHhhcCCHHHHHHHHHHHhccCCC
Q 048358 377 KRDH--HIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPDAKIW---GSLLSSCRTYSNLEIAVIAMEHLLVLEPE 450 (541)
Q Consensus 377 ~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 450 (541)
.... ..+.+...+..++..+...|++++|.+.+++. +..||.... ..........++.+.+.+.+++..+..|+
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~ 331 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD 331 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC
Confidence 4321 11247788888999999999999999999888 555665421 22222234568889999999999999999
Q ss_pred Cc--chHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcc
Q 048358 451 DT--GNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRA 528 (541)
Q Consensus 451 ~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 528 (541)
++ ....++++.+.+.|+|++|.+.|+..... +.+|+... +..|+.++.++|+.
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~------------------------~~~p~~~~-~~~La~ll~~~g~~ 386 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAAC------------------------KEQLDAND-LAMAADAFDQAGDK 386 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHh------------------------hcCCCHHH-HHHHHHHHHHcCCH
Confidence 99 88889999999999999999999953221 13566554 66999999999999
Q ss_pred cCCccccccc
Q 048358 529 KDVIDIMYED 538 (541)
Q Consensus 529 ~~a~~~~~~~ 538 (541)
++|.+...+.
T Consensus 387 ~~A~~~~~~~ 396 (409)
T TIGR00540 387 AEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHH
Confidence 9988777654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-12 Score=117.87 Aligned_cols=395 Identities=14% Similarity=0.132 Sum_probs=272.3
Q ss_pred hHHHH---HHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHH-HHHHHHhccCCchHHHHHHHHHHHhCCCCch--
Q 048358 79 LYNAM---IRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLP-FVIKSCAGLLCPSLGKQIHAHVCKFGLKSHS-- 152 (541)
Q Consensus 79 ~~~~l---l~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-- 152 (541)
+|+.| ..-|..+....+|+..|+-..+... -|+..... .+...+.+..++..|.+.++..+..-+..+.
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkm-----f~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~ 274 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKM-----FPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDM 274 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccc-----cCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhh
Confidence 45444 4456667778899999998887765 66665443 3445677888899999999988876433333
Q ss_pred --hhHHHHHHHHHcCCChHHHHHHHhhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHhcCCC----------------C
Q 048358 153 --ITENALLDLYGKCDELIEAHKVFEEMTD--RDIVAWNNLISGYARLGQMKKARMLFDKMPY----------------T 212 (541)
Q Consensus 153 --~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------------~ 212 (541)
...+.+...+.+.|.++.|...|+...+ |+..+-..|+-++.--|+-++..+.|.+|.. |
T Consensus 275 rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp 354 (840)
T KOG2003|consen 275 RIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDP 354 (840)
T ss_pred HHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCc
Confidence 3344455567889999999999999876 7777666667777778999999999988751 1
Q ss_pred CcchHHH-----HHHHHHhcC--ChHHHHHHHHHHHHCCCCCChHH-----HHH----------------HHHHHHccCC
Q 048358 213 TIVSWTA-----MISGYTHIG--SYAEALDVFRQMQMVGIEPDEIS-----IVS----------------VLPACAQLGS 264 (541)
Q Consensus 213 ~~~~~~~-----l~~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~~-----~~~----------------ll~~~~~~~~ 264 (541)
+....+. .++-.-+.+ +.++++-.-.++..--+.|+... ... -...+.+.|+
T Consensus 355 ~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d 434 (840)
T KOG2003|consen 355 DDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGD 434 (840)
T ss_pred chHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccC
Confidence 1122222 222222221 23333333333333333343211 000 1123678999
Q ss_pred hHHHHHHHHHHHHhCCCccHhHHHHHHHHH------------------------------------HhcCCHHHHHHHHH
Q 048358 265 LELGEWIHMYCDKNHLLRRTVICNALIEMY------------------------------------IKCGCINQASQLFD 308 (541)
Q Consensus 265 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~------------------------------------~~~g~~~~A~~~~~ 308 (541)
++.|.+++.-..+..-+.-...-+.|-..+ ...|++++|.+.|+
T Consensus 435 ~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~yk 514 (840)
T KOG2003|consen 435 IEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYK 514 (840)
T ss_pred HHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHH
Confidence 999999998877654332222222111111 13477888888888
Q ss_pred ccCCCChhHHHHHHH---HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCc
Q 048358 309 QMVERDVVSWSTVIG---GLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHK 385 (541)
Q Consensus 309 ~~~~~~~~~~~~l~~---~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 385 (541)
+....|...-.+|.. .+-..|+.++|++.|-++... +..+......+...|....+...|++++..... -+|.+
T Consensus 515 eal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~d 591 (840)
T KOG2003|consen 515 EALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPND 591 (840)
T ss_pred HHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCC
Confidence 888777665444443 466789999999999887654 245677788888999999999999999988875 56778
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 048358 386 IEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYA 463 (541)
Q Consensus 386 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 463 (541)
+.....|.+.|-+.|+-..|.+..-+- ..-| +..+..=|..-|....-.++++.+|+++.-+.|.-...-..++.++.
T Consensus 592 p~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~r 671 (840)
T KOG2003|consen 592 PAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFR 671 (840)
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 888999999999999999999875444 5445 56666666666777888899999999998888886655556677888
Q ss_pred hcCCHHHHHHHHHHhhhC
Q 048358 464 KHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 464 ~~g~~~~A~~~~~~m~~~ 481 (541)
+.|++.+|.++++....+
T Consensus 672 rsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 672 RSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred hcccHHHHHHHHHHHHHh
Confidence 899999999999998765
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.5e-14 Score=133.64 Aligned_cols=276 Identities=14% Similarity=0.093 Sum_probs=219.4
Q ss_pred CHHHHHHHHhcCCC--CCc-chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC----ChHHHHHHHHHHHccCChHHHHH
Q 048358 198 QMKKARMLFDKMPY--TTI-VSWTAMISGYTHIGSYAEALDVFRQMQMVGIEP----DEISIVSVLPACAQLGSLELGEW 270 (541)
Q Consensus 198 ~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p----~~~~~~~ll~~~~~~~~~~~a~~ 270 (541)
+..+|...|...+. .|+ .+...+.++|...+++++|.++|+.+.+. .| +..+|.+.+..+-.. .+..
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~--~p~rv~~meiyST~LWHLq~~----v~Ls 407 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRI--EPYRVKGMEIYSTTLWHLQDE----VALS 407 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccccccchhHHHHHHHHHHhh----HHHH
Confidence 45788888888542 233 55667889999999999999999999875 33 556777777654332 2222
Q ss_pred HHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 048358 271 IHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVER---DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVP 347 (541)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 347 (541)
.+.+-.-.--+..+.+|.++.++|.-+++.+.|++.|++..+- ...+|+.+..-+....++|.|...|+..+... +
T Consensus 408 ~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~ 486 (638)
T KOG1126|consen 408 YLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-P 486 (638)
T ss_pred HHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-c
Confidence 2222222222456889999999999999999999999999664 45688888888899999999999999987654 3
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 048358 348 PNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLL 425 (541)
Q Consensus 348 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 425 (541)
-+-..|..+.-.|.+.++++.|.-.|+++..-+ |.+......+...+.+.|+.++|+.+++++ ..+| |+..-...+
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN--P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN--PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCC--ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 344567778889999999999999999998743 556777788888999999999999999998 4555 555556666
Q ss_pred HHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 048358 426 SSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKS 482 (541)
Q Consensus 426 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 482 (541)
..+...+++++|+..++++.+.-|++..++..++..|.+.|+.+.|+.-|--+.+.+
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 778889999999999999999999999999999999999999999998777765543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.4e-12 Score=114.18 Aligned_cols=178 Identities=13% Similarity=0.122 Sum_probs=89.0
Q ss_pred HcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCc-ccHHHHHHHHhccCC
Q 048358 57 NSGGDLAYASLLFKQVKE---PNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDK-FTLPFVIKSCAGLLC 132 (541)
Q Consensus 57 ~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~ 132 (541)
...+++..|+.+|++... .+...|-..+..=.++.....|..++++.... -|-+ ..|..-+..--..|+
T Consensus 84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~-------lPRVdqlWyKY~ymEE~LgN 156 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI-------LPRVDQLWYKYIYMEEMLGN 156 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh-------cchHHHHHHHHHHHHHHhcc
Confidence 334455555555555544 34444555555555555555566666555543 2222 222223333334455
Q ss_pred chHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcC--CCChhhHHHHHHHHHhcCCHHHHHHHHhcCC
Q 048358 133 PSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMT--DRDIVAWNNLISGYARLGQMKKARMLFDKMP 210 (541)
Q Consensus 133 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 210 (541)
...|.++|+.-.+ ..|+...|.+.++.=.+...++.|..++++.. .|++.+|.....--.++|+...|..+|+...
T Consensus 157 i~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAi 234 (677)
T KOG1915|consen 157 IAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAI 234 (677)
T ss_pred cHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 5555555555544 34555555555555555555555555555543 2555555555555555555555555555443
Q ss_pred C------CCcchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048358 211 Y------TTIVSWTAMISGYTHIGSYAEALDVFRQMQMV 243 (541)
Q Consensus 211 ~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 243 (541)
. .+...+.++...-.++..++.|.-+|+-.+++
T Consensus 235 e~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~ 273 (677)
T KOG1915|consen 235 EFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH 273 (677)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 01123444444444445555555555555443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.9e-12 Score=116.63 Aligned_cols=437 Identities=12% Similarity=0.044 Sum_probs=296.3
Q ss_pred CCchhHHHHHHHHHHcCCChHHHHHHHhc--CCCCCcchHHHHHHHHHcCCChhHHHHHHHH----hhhCCC---C-CCC
Q 048358 43 SQSNFLVTKMIDVCNSGGDLAYASLLFKQ--VKEPNVFLYNAMIRAYTNNHLYGLAINLYKQ----MLRDPR---T-GSL 112 (541)
Q Consensus 43 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~--~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~----m~~~~~---~-~~~ 112 (541)
.-|+...--+++++.-.|+...|..+... +.+.|.........++.+..++++|+.++.. +....- . +..
T Consensus 46 ~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~ 125 (611)
T KOG1173|consen 46 TNDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANT 125 (611)
T ss_pred cCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhce
Confidence 34555555677888888888888877754 3457777888888888899999999999882 211100 0 000
Q ss_pred CCCCccc----HHHH-------HHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCCC
Q 048358 113 ILPDKFT----LPFV-------IKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDR 181 (541)
Q Consensus 113 ~~p~~~~----~~~l-------l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 181 (541)
+.+|..- -+.- ...+....+.++|...+.+.+...+. .-..+..++....-. ..+-..+|+..
T Consensus 126 l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~-c~Ea~~~lvs~~mlt--~~Ee~~ll~~l--- 199 (611)
T KOG1173|consen 126 LELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAK-CFEAFEKLVSAHMLT--AQEEFELLESL--- 199 (611)
T ss_pred eccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchh-hHHHHHHHHHHHhcc--hhHHHHHHhcc---
Confidence 0111111 0111 11223334555566565555443211 112222222222211 11222333321
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHhcC--------------------CCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 048358 182 DIVAWNNLISGYARLGQMKKARMLFDKM--------------------PYTTIVSWTAMISGYTHIGSYAEALDVFRQMQ 241 (541)
Q Consensus 182 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~--------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 241 (541)
+..... ..+.+.-..+|+-. .+.++.....-..-+...+++.+..++++...
T Consensus 200 ~~a~~~--------~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~ll 271 (611)
T KOG1173|consen 200 DLAMLT--------KEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELL 271 (611)
T ss_pred cHHhhh--------hhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHH
Confidence 111100 00111111111100 02234445555667778899999999999998
Q ss_pred HCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCCCh---hHH
Q 048358 242 MVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERDV---VSW 318 (541)
Q Consensus 242 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~ 318 (541)
+.. ++....+..-|.++...|+...-.-+-..+++.- |..+.+|-++.-.|.-.|+..+|++.|.+...-|. ..|
T Consensus 272 e~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaW 349 (611)
T KOG1173|consen 272 EKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAW 349 (611)
T ss_pred hhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHH
Confidence 764 6677777777888888888877777766666653 55678899999999999999999999998855443 489
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHh
Q 048358 319 STVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGR 398 (541)
Q Consensus 319 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 398 (541)
-.+...|+..|..++|+..|...-+. ++-....+.-+.--|.+.++++.|.+.|...... .|.|+...+-+.-....
T Consensus 350 l~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai--~P~Dplv~~Elgvvay~ 426 (611)
T KOG1173|consen 350 LAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI--APSDPLVLHELGVVAYT 426 (611)
T ss_pred HHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc--CCCcchhhhhhhheeeh
Confidence 99999999999999999999887664 1223333444556688899999999999999863 46677778888888888
Q ss_pred cCCHHHHHHHHHhCC--------CCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHH
Q 048358 399 AGRLDQALNIIEEMP--------MKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWE 469 (541)
Q Consensus 399 ~g~~~~A~~~~~~~~--------~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 469 (541)
.+.+.+|..+|+... .++ -..+++.|..+|.+.+.+++|+..+++++.+.|.++.++..++-+|...|+++
T Consensus 427 ~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld 506 (611)
T KOG1173|consen 427 YEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLD 506 (611)
T ss_pred HhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChH
Confidence 999999999998761 112 45678999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHH
Q 048358 470 DVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALH 524 (541)
Q Consensus 470 ~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 524 (541)
.|.+.|.+... +.|++..+-.+|+...+.
T Consensus 507 ~Aid~fhKaL~--------------------------l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 507 KAIDHFHKALA--------------------------LKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHHHHh--------------------------cCCccHHHHHHHHHHHHh
Confidence 99999998754 467777777777776664
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.8e-12 Score=113.09 Aligned_cols=250 Identities=12% Similarity=0.071 Sum_probs=145.2
Q ss_pred HHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCCC------ChhhHHHHHHHHHhcCC
Q 048358 125 KSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDR------DIVAWNNLISGYARLGQ 198 (541)
Q Consensus 125 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~ 198 (541)
.++......+++.+-.+.....|++.+...-+....+.-...|+|+|+.+|+++... |..+|..++-.--....
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 344455566677777777777777666665565666666777788888888877652 34455544433222222
Q ss_pred HHH-HHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 048358 199 MKK-ARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDK 277 (541)
Q Consensus 199 ~~~-A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 277 (541)
+.- |..++ .+.+=-+.|...+..-|.-.++.++|..+|++.++.+ +.....|+.+-+-|....+...|..-++.+++
T Consensus 315 Ls~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd 392 (559)
T KOG1155|consen 315 LSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD 392 (559)
T ss_pred HHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHh
Confidence 211 11111 1112223445555555666666677777777766553 33334455555556666666666666666665
Q ss_pred hCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 048358 278 NHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFI 354 (541)
Q Consensus 278 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 354 (541)
-. +.|-..|-.|.++|.-.+...-|+-.|++..+ .|...|.+|..+|.+.++.++|++.|+.....| ..+...+.
T Consensus 393 i~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~ 470 (559)
T KOG1155|consen 393 IN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALV 470 (559)
T ss_pred cC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHH
Confidence 44 34555666666666666666666666665522 355666666666666666666666666666655 33455666
Q ss_pred HHHHHHhccCcHHHHHHHHHHhhh
Q 048358 355 GLLSACAHTGFWNEGLMYFDSMKR 378 (541)
Q Consensus 355 ~l~~~~~~~g~~~~a~~~~~~~~~ 378 (541)
.|...|.+.++.++|.+.|++..+
T Consensus 471 ~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 471 RLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 666666666666666666655544
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.9e-12 Score=123.46 Aligned_cols=245 Identities=10% Similarity=0.061 Sum_probs=112.1
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChHHHH--HHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHH
Q 048358 225 THIGSYAEALDVFRQMQMVGIEPDEISIV--SVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQ 302 (541)
Q Consensus 225 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 302 (541)
.+.|+++.|...|.++.+. .|+..... .....+...|+++.|...++.+.+.. +.++.....+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHH
Confidence 4444444444444444432 33322221 11233444444444444444444433 2234444444555555555555
Q ss_pred HHHHHHccCCCC---hh--------HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 048358 303 ASQLFDQMVERD---VV--------SWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLM 371 (541)
Q Consensus 303 A~~~~~~~~~~~---~~--------~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 371 (541)
|.+++..+.+.. .. +|..++.......+.+...++++.+.+. .+.++.....+..++...|+.++|..
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 554444443211 11 1222222222333334444444443322 13344455555555555566666665
Q ss_pred HHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCC
Q 048358 372 YFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPD-AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEP 449 (541)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 449 (541)
++++..+. +|+.. ..++.+....++.+++++.++.. +..|+ ...+..+...|.+.+++++|.+.|+++.+..|
T Consensus 285 ~L~~~l~~---~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P 359 (398)
T PRK10747 285 IILDGLKR---QYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRP 359 (398)
T ss_pred HHHHHHhc---CCCHH--HHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 55555542 23332 11222223345555555555555 33342 33444555555666666666666666665555
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048358 450 EDTGNYVLLSNIYAKHGRWEDVSRMRKLIR 479 (541)
Q Consensus 450 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 479 (541)
++ ..+..++.++.+.|+.++|.+.+++-.
T Consensus 360 ~~-~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 360 DA-YDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 53 334455566666666666665555543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.61 E-value=5e-11 Score=108.53 Aligned_cols=399 Identities=12% Similarity=0.109 Sum_probs=302.7
Q ss_pred CcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhH
Q 048358 76 NVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITE 155 (541)
Q Consensus 76 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 155 (541)
+...|-.....=..++++..|..+|++.+... ..+...|..-+.+-.+......|..+++.++..-+..| ..|
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd------~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlW 144 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD------YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLW 144 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc------cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHH
Confidence 45566666666667888999999999998765 56667777778888889999999999999988643333 445
Q ss_pred HHHHHHHHcCCChHHHHHHHhhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHhcCC--CCCcchHHHHHHHHHhcCChH
Q 048358 156 NALLDLYGKCDELIEAHKVFEEMTD--RDIVAWNNLISGYARLGQMKKARMLFDKMP--YTTIVSWTAMISGYTHIGSYA 231 (541)
Q Consensus 156 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~ 231 (541)
-..+.+=-..|++..|.++|++-.+ |+..+|++.|..-.+.+.++.|..++++.. .|++.+|-...+.-.+.|+..
T Consensus 145 yKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~ 224 (677)
T KOG1915|consen 145 YKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVA 224 (677)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHH
Confidence 5555555667999999999998765 999999999999999999999999999864 789999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCChH----HHHHHHHHHHccCChHHHHHHHHHHHHhCCCcc-HhHHHHHHHHHHhcCCHHHHHHH
Q 048358 232 EALDVFRQMQMVGIEPDEI----SIVSVLPACAQLGSLELGEWIHMYCDKNHLLRR-TVICNALIEMYIKCGCINQASQL 306 (541)
Q Consensus 232 ~A~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~ 306 (541)
.|..+|....+. --|.. .+.+...-=.+...++.|..+|+.+++.-.... ...|..+...--+-|+.......
T Consensus 225 ~aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~ 302 (677)
T KOG1915|consen 225 LARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDA 302 (677)
T ss_pred HHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHH
Confidence 999999988764 22333 333333334567788999999998887643322 44566666555566665544443
Q ss_pred --------HHccCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-------HHHHHHHH---HhccCc
Q 048358 307 --------FDQMVER---DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDI-------TFIGLLSA---CAHTGF 365 (541)
Q Consensus 307 --------~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-------~~~~l~~~---~~~~g~ 365 (541)
|+.++.. |-.+|--.+..-...|+.+...++|++.+.. +||-.. .|.-+=.+ -....+
T Consensus 303 Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed 381 (677)
T KOG1915|consen 303 IVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAED 381 (677)
T ss_pred HhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344444 4456666777777789999999999998876 466332 22222222 235688
Q ss_pred HHHHHHHHHHhhhhcCCCCcHhHHH----HHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCCHHHHHHH
Q 048358 366 WNEGLMYFDSMKRDHHIEHKIEHYG----CLVDLLGRAGRLDQALNIIEEM-PMKPDAKIWGSLLSSCRTYSNLEIAVIA 440 (541)
Q Consensus 366 ~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 440 (541)
.+.+.++|+.+.+ -+|....|+. .......++.+...|.+++-.. |.-|...+|...|..-.+.++++....+
T Consensus 382 ~ertr~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkL 459 (677)
T KOG1915|consen 382 VERTRQVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKL 459 (677)
T ss_pred HHHHHHHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999987 3555555544 3444456888999999998776 8889999999999998899999999999
Q ss_pred HHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccC
Q 048358 441 MEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKT 486 (541)
Q Consensus 441 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 486 (541)
|++.++.+|.+..+|...+..-...|+++.|..+|+-..+++.-..
T Consensus 460 YEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldm 505 (677)
T KOG1915|consen 460 YEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDM 505 (677)
T ss_pred HHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCccccc
Confidence 9999999999999999999999999999999999998887764333
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-11 Score=119.52 Aligned_cols=277 Identities=10% Similarity=0.014 Sum_probs=134.6
Q ss_pred cCCChHHHHHHHhhcCC--CC-hhhHHHHHHHHHhcCCHHHHHHHHhcCCC--CCc--chHHHHHHHHHhcCChHHHHHH
Q 048358 164 KCDELIEAHKVFEEMTD--RD-IVAWNNLISGYARLGQMKKARMLFDKMPY--TTI--VSWTAMISGYTHIGSYAEALDV 236 (541)
Q Consensus 164 ~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~--~~~~~l~~~~~~~g~~~~A~~~ 236 (541)
..|+++.|.+.+.+..+ |+ ...+-.......+.|+.+.|.+.+.+..+ |+. ...-.....+...|+++.|...
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 34555555555544433 11 11222223344444555555555544321 221 1222234555556666666666
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhH-------HHHHHHHHHhcCCHHHHHHHHHc
Q 048358 237 FRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVI-------CNALIEMYIKCGCINQASQLFDQ 309 (541)
Q Consensus 237 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~g~~~~A~~~~~~ 309 (541)
++.+.+.. +-+...+..+...+...|+++.+.+.+..+.+.+..+.... +..++..-......+...+.+..
T Consensus 176 l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~ 254 (409)
T TIGR00540 176 VDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN 254 (409)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 66665553 22334455555555666666666666666555543322211 11111111112223333444444
Q ss_pred cCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHhccCcHHHHHHHHHHhhhhcCCC
Q 048358 310 MVE---RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITF---IGLLSACAHTGFWNEGLMYFDSMKRDHHIE 383 (541)
Q Consensus 310 ~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 383 (541)
.++ .++..+..+...+...|+.++|.+++++..+.. |+.... ..........++.+.+.+.++...+.. |
T Consensus 255 ~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~--p 330 (409)
T TIGR00540 255 QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV--D 330 (409)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC--C
Confidence 433 255566666666666677777776666666643 232210 111112223455566666666655532 2
Q ss_pred CcH--hHHHHHHHHHHhcCCHHHHHHHHHh--C-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHh
Q 048358 384 HKI--EHYGCLVDLLGRAGRLDQALNIIEE--M-PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLL 445 (541)
Q Consensus 384 ~~~--~~~~~l~~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 445 (541)
.+. ....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++|.+++++.+
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 233 4445566666666666666666662 2 445666555566666666666666666666554
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.8e-11 Score=108.17 Aligned_cols=275 Identities=14% Similarity=0.094 Sum_probs=160.8
Q ss_pred cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHH
Q 048358 227 IGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQL 306 (541)
Q Consensus 227 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 306 (541)
.|+|.+|+++..+-.+.+-. ....|..-..+.-+.|+.+.+..++.++.+.-..++....-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 46666666666665555422 23444555555566666666666666666554445555555666666666666666665
Q ss_pred HHccC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHhccCcHHHHHHHHHHh
Q 048358 307 FDQMV---ERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPND-------ITFIGLLSACAHTGFWNEGLMYFDSM 376 (541)
Q Consensus 307 ~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~ 376 (541)
+.++. ..++........+|.+.|++.+...++..+.+.|+-.+. .++..+++-....+..+.-...|+..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 55542 235556666666677777777777777766666643332 24555555555555555555566666
Q ss_pred hhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchH
Q 048358 377 KRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNY 455 (541)
Q Consensus 377 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 455 (541)
..+ ...++..-.+++.-+.++|+.++|.++.++. +..-|.. ....-.+.+-++.+.-++..++..+..|++|..+
T Consensus 256 pr~--lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~ 331 (400)
T COG3071 256 PRK--LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLL 331 (400)
T ss_pred cHH--hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHH
Confidence 553 2334444456666666777777777666555 2222332 1222234566666666666666666666666667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCcc
Q 048358 456 VLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVID 533 (541)
Q Consensus 456 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 533 (541)
.+|+..|.+.+.|.+|...++...+.+ .+.+.+..++.++.++|+..+|.+
T Consensus 332 ~tLG~L~~k~~~w~kA~~~leaAl~~~---------------------------~s~~~~~~la~~~~~~g~~~~A~~ 382 (400)
T COG3071 332 STLGRLALKNKLWGKASEALEAALKLR---------------------------PSASDYAELADALDQLGEPEEAEQ 382 (400)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhcC---------------------------CChhhHHHHHHHHHHcCChHHHHH
Confidence 777777777777777777766554432 123445666666666666655543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.9e-10 Score=103.05 Aligned_cols=289 Identities=11% Similarity=0.064 Sum_probs=201.0
Q ss_pred CCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChH
Q 048358 90 NHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELI 169 (541)
Q Consensus 90 ~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 169 (541)
.|+|.+|..+..+-.+.+ ......|..-.++.-+.|+.+.+-+++.++.+....++...+-+........|+++
T Consensus 97 eG~~~qAEkl~~rnae~~------e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~ 170 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG------EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYP 170 (400)
T ss_pred cCcHHHHHHHHHHhhhcC------cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCch
Confidence 456666666665554443 23333444444555555666666666655555422344444444455555555555
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh
Q 048358 170 EAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDE 249 (541)
Q Consensus 170 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 249 (541)
.|..-+++. ..|...++........+|.+.|++.+...++.+|.+.|.--|.
T Consensus 171 aA~~~v~~l----------------------------l~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~ 222 (400)
T COG3071 171 AARENVDQL----------------------------LEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDE 222 (400)
T ss_pred hHHHHHHHH----------------------------HHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChH
Confidence 554443332 2234556677888888899999999999999999888755442
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHH
Q 048358 250 ISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE---RDVVSWSTVIGGLA 326 (541)
Q Consensus 250 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 326 (541)
.. .+ ....+|+.+++-....+..+.-...++..+. .++..-.+++.-+.
T Consensus 223 e~-----------------~~-----------le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li 274 (400)
T COG3071 223 EA-----------------AR-----------LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLI 274 (400)
T ss_pred HH-----------------HH-----------HHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHH
Confidence 21 10 0134566677766666777777777777744 46777788888899
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 048358 327 NHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQAL 406 (541)
Q Consensus 327 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 406 (541)
+.|+.++|.++.++..+.+..|+ ....-.+.+.++...-++..+.-.+.++. ++..+.+|...|.+.+.+.+|.
T Consensus 275 ~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~--~p~L~~tLG~L~~k~~~w~kA~ 348 (400)
T COG3071 275 RLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPE--DPLLLSTLGRLALKNKLWGKAS 348 (400)
T ss_pred HcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHhhHHHHHH
Confidence 99999999999999988876666 22334566778888888888888876544 4466888999999999999999
Q ss_pred HHHHhC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 048358 407 NIIEEM-PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLV 446 (541)
Q Consensus 407 ~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 446 (541)
..|+.. +..|+..+|.-+..++.+.|+..+|.+..++.+.
T Consensus 349 ~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 349 EALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 999877 7889999999999999999999999999988874
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.9e-11 Score=103.44 Aligned_cols=215 Identities=11% Similarity=0.019 Sum_probs=114.7
Q ss_pred cCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhC-CCCc--hhhHHHHHHHHHcC
Q 048358 89 NNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFG-LKSH--SITENALLDLYGKC 165 (541)
Q Consensus 89 ~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~--~~~~~~l~~~~~~~ 165 (541)
-+.++++|+++|-+|.+.. +-+..+..+|.+.|.+.|..|.|+++++.+.++. ...+ ......|..-|...
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d------~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~a 120 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED------PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAA 120 (389)
T ss_pred hhcCcchHHHHHHHHHhcC------chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHh
Confidence 3567888888888888764 5566677778888888888888888888887642 1111 12334566667777
Q ss_pred CChHHHHHHHhhcCCCC---hhhHHHHHHHHHhcCCHHHHHHHHhcCCCCCcc--------hHHHHHHHHHhcCChHHHH
Q 048358 166 DELIEAHKVFEEMTDRD---IVAWNNLISGYARLGQMKKARMLFDKMPYTTIV--------SWTAMISGYTHIGSYAEAL 234 (541)
Q Consensus 166 g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~l~~~~~~~g~~~~A~ 234 (541)
|-+|.|+++|..+.+.+ ..+...|+..|-...+|++|++.-+++.+-+.. .|.-|...+....+++.|.
T Consensus 121 Gl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~ 200 (389)
T COG2956 121 GLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAR 200 (389)
T ss_pred hhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHH
Confidence 77777777777776522 234445555666666666665555544322222 2333333444445555555
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHcc
Q 048358 235 DVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQM 310 (541)
Q Consensus 235 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 310 (541)
.++.+..+.+ +.....-..+-......|+++.|.+.++.+.+.+...-..+...|..+|...|+.++...++..+
T Consensus 201 ~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~ 275 (389)
T COG2956 201 ELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRA 275 (389)
T ss_pred HHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 5555555442 11111112222333344444444444444444433333333344444444444444444444333
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.47 E-value=3e-11 Score=108.43 Aligned_cols=198 Identities=15% Similarity=0.112 Sum_probs=163.9
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048358 283 RTVICNALIEMYIKCGCINQASQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSA 359 (541)
Q Consensus 283 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 359 (541)
....+..+...|...|++++|...+++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 355677788888889999999988887743 245677888888999999999999999988875 5566778888888
Q ss_pred HhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHH
Q 048358 360 CAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIA 437 (541)
Q Consensus 360 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a 437 (541)
+...|++++|...++........+.....+..+...+...|++++|...+++. ...| +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998864222334556777888999999999999999887 4445 466788888889999999999
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 438 VIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
...++++.+..|.++..+..++..+...|+.++|..+.+.+...
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999988888888889999999999999999998877543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.6e-10 Score=108.09 Aligned_cols=455 Identities=14% Similarity=0.086 Sum_probs=252.3
Q ss_pred chhhhcCCCCChhhHHHHHHhccChhHH--HHHHHHHHHhccCCchhHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchH
Q 048358 3 ARIGALSIKELEDRFVPILQSCENLIEL--KKIHTQILKYLLSQSNFLVTKMIDVCNSGGDLAYASLLFKQVKEPNVFLY 80 (541)
Q Consensus 3 ~~m~~~g~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 80 (541)
..|..+||.|+..||..++..++..++. ..++..|.-...+....+++.++......++.+.+. +|.+.+|
T Consensus 14 a~~e~~gi~PnRvtyqsLiarYc~~gdieaatif~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDty 86 (1088)
T KOG4318|consen 14 ALHEISGILPNRVTYQSLIARYCTKGDIEAATIFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTY 86 (1088)
T ss_pred HHHHHhcCCCchhhHHHHHHHHcccCCCccccchhhhhcccccccchhHHHHHhcccccccccCCC-------CCchhHH
Confidence 3567788888888888888777655544 236666666666667777888887777777776655 6778888
Q ss_pred HHHHHHHHcCCChhHHHHHHHH-hhh-------CCCCCCCCCCCcccHHHHHH-HHhccCCchHH--------HHHHHHH
Q 048358 81 NAMIRAYTNNHLYGLAINLYKQ-MLR-------DPRTGSLILPDKFTLPFVIK-SCAGLLCPSLG--------KQIHAHV 143 (541)
Q Consensus 81 ~~ll~~~~~~g~~~~A~~~~~~-m~~-------~~~~~~~~~p~~~~~~~ll~-~~~~~~~~~~a--------~~~~~~~ 143 (541)
..++.+|...|+... .+..++ |.. .|+ -...-+ .++. .|+..-.++.. ..+++..
T Consensus 87 t~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gv------gs~e~~-fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 87 TNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGV------GSPERW-FLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred HHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhcc------CcHHHH-HHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 888888888887654 222222 211 121 111111 1111 11111111111 1222222
Q ss_pred HHhCC-CCchhhHHH---HHHHHHc-CCChHHHHHHHhhcCC-CChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCCc---
Q 048358 144 CKFGL-KSHSITENA---LLDLYGK-CDELIEAHKVFEEMTD-RDIVAWNNLISGYARLGQMKKARMLFDKMPYTTI--- 214 (541)
Q Consensus 144 ~~~g~-~~~~~~~~~---l~~~~~~-~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--- 214 (541)
++.+. .|...-++. .++-+.. ...+++-........+ ++..++..++.+-...|+.+.|..++..|.+.+.
T Consensus 159 lkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir 238 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIR 238 (1088)
T ss_pred HHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcc
Confidence 22221 111111111 1111111 1223333344444443 6777788888888888888888888887765432
Q ss_pred -chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHH-----------HHHHHH-----
Q 048358 215 -VSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWI-----------HMYCDK----- 277 (541)
Q Consensus 215 -~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~-----------~~~~~~----- 277 (541)
+-|-.|+-+ .++...+..+++-|...|+.|+..|+...+-.+...|....+... +..+..
T Consensus 239 ~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~ 315 (1088)
T KOG4318|consen 239 AHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLAN 315 (1088)
T ss_pred cccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhH
Confidence 223333333 677777777777888888888888887777776665554321110 000000
Q ss_pred --------------------hCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCC-------ChhHHHHHHHHHHhcCC
Q 048358 278 --------------------NHLLRRTVICNALIEMYIKCGCINQASQLFDQMVER-------DVVSWSTVIGGLANHGK 330 (541)
Q Consensus 278 --------------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~~~ 330 (541)
.|+.....+|..... ....|.-+....+-..+..| ++..|..++..|.+.-+
T Consensus 316 k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e 394 (1088)
T KOG4318|consen 316 KRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIE 394 (1088)
T ss_pred HHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHH
Confidence 011111222222221 12244444555544444222 34445444444432211
Q ss_pred ----------------------hHHHHHHHHHHHhCCCCCCHH----------------------------HHHHHHHHH
Q 048358 331 ----------------------AHKAIHLFHEMQRLKVPPNDI----------------------------TFIGLLSAC 360 (541)
Q Consensus 331 ----------------------~~~a~~~~~~m~~~~~~p~~~----------------------------~~~~l~~~~ 360 (541)
..+..+++... .||.. .-+.++..|
T Consensus 395 ~~~~~~i~~~~qgls~~l~se~tp~vsell~~l-----rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l 469 (1088)
T KOG4318|consen 395 RHICSRIYYAGQGLSLNLNSEDTPRVSELLENL-----RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTL 469 (1088)
T ss_pred hhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHh-----CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHH
Confidence 11111111111 22211 123344444
Q ss_pred hccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCC-----CCCCHHHHHHHHHHHhhcCCHH
Q 048358 361 AHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMP-----MKPDAKIWGSLLSSCRTYSNLE 435 (541)
Q Consensus 361 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~l~~~~~~~~~~~ 435 (541)
+..-+..+++..-+..... .-...|..|++.+....+.+.|..+.++.. +.-|..-+..+...+.+.+...
T Consensus 470 ~se~n~lK~l~~~ekye~~----lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~ 545 (1088)
T KOG4318|consen 470 NSEYNKLKILCDEEKYEDL----LFAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILY 545 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHH----HhhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHH
Confidence 4444445555444433331 112568899999999999999999999883 3346667788888899999999
Q ss_pred HHHHHHHHHhccC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCcc
Q 048358 436 IAVIAMEHLLVLE---PEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKK 485 (541)
Q Consensus 436 ~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 485 (541)
.+..++.++.+.- |........+.+.....|+.+.-.++.+-+...|+.-
T Consensus 546 dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 546 DLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 9999998887632 3334566778888889999999999999988888655
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.6e-10 Score=100.31 Aligned_cols=283 Identities=14% Similarity=0.153 Sum_probs=151.2
Q ss_pred CChHHHHHHHhhcCCCChhh---HHHHHHHHHhcCCHHHHHHHHhcCC-CCCc------chHHHHHHHHHhcCChHHHHH
Q 048358 166 DELIEAHKVFEEMTDRDIVA---WNNLISGYARLGQMKKARMLFDKMP-YTTI------VSWTAMISGYTHIGSYAEALD 235 (541)
Q Consensus 166 g~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~------~~~~~l~~~~~~~g~~~~A~~ 235 (541)
.+.++|.+.|-+|.+.|..+ .-+|.+.|-+.|..+.|+++.+.+. .||. .+...|..-|...|-++.|..
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 45666666666666543333 2344455555555555555555443 2322 122334444555555555555
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCCCh
Q 048358 236 VFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERDV 315 (541)
Q Consensus 236 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 315 (541)
+|..+.+.+ .- -......|+..|-...+|++|.++-+++.+.+.
T Consensus 129 ~f~~L~de~-ef-----------------------------------a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~ 172 (389)
T COG2956 129 IFNQLVDEG-EF-----------------------------------AEGALQQLLNIYQATREWEKAIDVAERLVKLGG 172 (389)
T ss_pred HHHHHhcch-hh-----------------------------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCC
Confidence 555554332 11 133444556666666666666666555533322
Q ss_pred h--------HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHh
Q 048358 316 V--------SWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIE 387 (541)
Q Consensus 316 ~--------~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 387 (541)
. .|.-+...+....+.+.|..++.+..+.+ +.....-..+.+.....|+++.|.+.++.+.+.+ ..--..
T Consensus 173 q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn-~~yl~e 250 (389)
T COG2956 173 QTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQN-PEYLSE 250 (389)
T ss_pred ccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhC-hHHHHH
Confidence 2 23334444445566777777777776654 3333334455566667777777777777776642 122234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHH-HH--
Q 048358 388 HYGCLVDLLGRAGRLDQALNIIEEM-PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNI-YA-- 463 (541)
Q Consensus 388 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~-~~-- 463 (541)
+...|..+|...|+.++...++.++ ...+....-..+........-.+.|...+.+-+...|.-. .+..++.. ..
T Consensus 251 vl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~-gf~rl~~~~l~da 329 (389)
T COG2956 251 VLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMR-GFHRLMDYHLADA 329 (389)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHH-HHHHHHHhhhccc
Confidence 4566677777777777777777665 3344444444444443344445555555555555555533 33333333 22
Q ss_pred hcCCHHHHHHHHHHhhhCCCccCC
Q 048358 464 KHGRWEDVSRMRKLIRSKSMKKTP 487 (541)
Q Consensus 464 ~~g~~~~A~~~~~~m~~~~~~~~~ 487 (541)
..|.+.+...+++.|..+.++..|
T Consensus 330 eeg~~k~sL~~lr~mvge~l~~~~ 353 (389)
T COG2956 330 EEGRAKESLDLLRDMVGEQLRRKP 353 (389)
T ss_pred cccchhhhHHHHHHHHHHHHhhcC
Confidence 234577777777777766554444
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.1e-08 Score=94.16 Aligned_cols=283 Identities=15% Similarity=0.194 Sum_probs=146.6
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCCc-------chHHHHHHHHHhcCChHHHHHHHHHHHHCCCC----------C---
Q 048358 188 NLISGYARLGQMKKARMLFDKMPYTTI-------VSWTAMISGYTHIGSYAEALDVFRQMQMVGIE----------P--- 247 (541)
Q Consensus 188 ~l~~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~----------p--- 247 (541)
.+...|-..|+++.|..+|++..+.+- .+|......-.+..+++.|+++.+.....--. |
T Consensus 392 ~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~ 471 (835)
T KOG2047|consen 392 EFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQA 471 (835)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHH
Confidence 334444445666666666665543221 23333334444445555555555544321100 0
Q ss_pred ----ChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC----CChh-HH
Q 048358 248 ----DEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE----RDVV-SW 318 (541)
Q Consensus 248 ----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-~~ 318 (541)
+...|...+..--..|-++....+++.+.+..+.... ........+....-++++.++|++-+. |++. .|
T Consensus 472 rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPq-ii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW 550 (835)
T KOG2047|consen 472 RLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQ-IIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIW 550 (835)
T ss_pred HHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHH-HHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHH
Confidence 1112222233333445555556666666655443222 222223333444456666666665433 3332 55
Q ss_pred HHHHHHHHh---cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HhccCcHHHHHHHHHHhhhhcCCCCc--HhHHHH
Q 048358 319 STVIGGLAN---HGKAHKAIHLFHEMQRLKVPPNDITFIGLLSA--CAHTGFWNEGLMYFDSMKRDHHIEHK--IEHYGC 391 (541)
Q Consensus 319 ~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~ 391 (541)
+..+.-+.+ ....+.|..+|++..+ |++|...-+..|+.+ -.+.|....|+.+++++.. ++++. ...|+.
T Consensus 551 ~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni 627 (835)
T KOG2047|consen 551 NTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNI 627 (835)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHH
Confidence 555554443 2357888888888887 667665544444333 2244777788888888765 34443 345665
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHH---HHHHHHhhcCCHHHHHHHHHHHhccCCC--CcchHHHHHHHHHhc
Q 048358 392 LVDLLGRAGRLDQALNIIEEM-PMKPDAKIWG---SLLSSCRTYSNLEIAVIAMEHLLVLEPE--DTGNYVLLSNIYAKH 465 (541)
Q Consensus 392 l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~ 465 (541)
.|.-....=-......+|++. ..-|+...-. .+...-.+.|.++.|..+|....++-+| +...|...-..-.+.
T Consensus 628 ~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrH 707 (835)
T KOG2047|consen 628 YIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRH 707 (835)
T ss_pred HHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhc
Confidence 554333222222233344443 2234443322 2333356788999999999888876644 566777777777788
Q ss_pred CCHHHHHHH
Q 048358 466 GRWEDVSRM 474 (541)
Q Consensus 466 g~~~~A~~~ 474 (541)
|+-+...++
T Consensus 708 GnedT~keM 716 (835)
T KOG2047|consen 708 GNEDTYKEM 716 (835)
T ss_pred CCHHHHHHH
Confidence 884444443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.8e-09 Score=96.89 Aligned_cols=432 Identities=14% Similarity=0.067 Sum_probs=262.1
Q ss_pred ChhHHHHHHHHHHHhccCCchhHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHH--HHH--HHcCCChhHHHHHHH
Q 048358 26 NLIELKKIHTQILKYLLSQSNFLVTKMIDVCNSGGDLAYASLLFKQVKEPNVFLYNAM--IRA--YTNNHLYGLAINLYK 101 (541)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l--l~~--~~~~g~~~~A~~~~~ 101 (541)
.++.+.+....++..+ +-+......-+-++.+.+++++|+.+.+.-... .+++.. =.+ +.+.+..++|+..++
T Consensus 27 e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~Dealk~~~ 103 (652)
T KOG2376|consen 27 EYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLDEALKTLK 103 (652)
T ss_pred HHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHHHHHHHHh
Confidence 3444555556666555 556667777777888999999999877764421 122222 233 457899999999998
Q ss_pred HhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCCC
Q 048358 102 QMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDR 181 (541)
Q Consensus 102 ~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 181 (541)
-.- +.|..+...-...|.+.|++++|..+|+.+.+.+.+ +... ..-.++.+ .+-.-.+. +.+..+..
T Consensus 104 ~~~---------~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d~d~-~~r~nl~a-~~a~l~~~-~~q~v~~v 170 (652)
T KOG2376|consen 104 GLD---------RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-DQDE-ERRANLLA-VAAALQVQ-LLQSVPEV 170 (652)
T ss_pred ccc---------ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-hHHH-HHHHHHHH-HHHhhhHH-HHHhccCC
Confidence 221 334447777778899999999999999999887633 2211 11111111 11111121 34444443
Q ss_pred ChhhHHH---HHHHHHhcCCHHHHHHHHhcC--------CCCCc----------chHHHHHHHHHhcCChHHHHHHHHHH
Q 048358 182 DIVAWNN---LISGYARLGQMKKARMLFDKM--------PYTTI----------VSWTAMISGYTHIGSYAEALDVFRQM 240 (541)
Q Consensus 182 ~~~~~~~---l~~~~~~~~~~~~A~~~~~~~--------~~~~~----------~~~~~l~~~~~~~g~~~~A~~~~~~m 240 (541)
...+|.. ....+...|++.+|+++++.. ...|. ..--.|..++...|+.++|..+|...
T Consensus 171 ~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~ 250 (652)
T KOG2376|consen 171 PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDI 250 (652)
T ss_pred CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 3334433 344567799999999999877 21111 12334566778899999999999999
Q ss_pred HHCCCCCChHHHHHHHHHH---HccCC-hH-HHHHHHHHHHHhC-------CC--ccHhHHHHHHHHHHhcCCHHHHHHH
Q 048358 241 QMVGIEPDEISIVSVLPAC---AQLGS-LE-LGEWIHMYCDKNH-------LL--RRTVICNALIEMYIKCGCINQASQL 306 (541)
Q Consensus 241 ~~~~~~p~~~~~~~ll~~~---~~~~~-~~-~a~~~~~~~~~~~-------~~--~~~~~~~~l~~~~~~~g~~~~A~~~ 306 (541)
+... .+|........+-+ ....+ ++ .+...++...... +. --...+........-.+..+.+.++
T Consensus 251 i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~ 329 (652)
T KOG2376|consen 251 IKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVREL 329 (652)
T ss_pred HHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 8875 55554333332222 11111 11 1111111111000 00 0011122222222334566777777
Q ss_pred HHccCCCC-hhHHHHHHHHHHh--cCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHH--------
Q 048358 307 FDQMVERD-VVSWSTVIGGLAN--HGKAHKAIHLFHEMQRLKVPPN-DITFIGLLSACAHTGFWNEGLMYFD-------- 374 (541)
Q Consensus 307 ~~~~~~~~-~~~~~~l~~~~~~--~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~-------- 374 (541)
....+... ...+.+++....+ ...+.++.+++....+.. +-+ .......+......|+++.|.+++.
T Consensus 330 ~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~-p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~s 408 (652)
T KOG2376|consen 330 SASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGH-PEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKS 408 (652)
T ss_pred HHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhh
Confidence 77775543 3344555544332 234777888888776653 222 3444555667788999999999999
Q ss_pred HhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHh
Q 048358 375 SMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM--------PMKPD-AKIWGSLLSSCRTYSNLEIAVIAMEHLL 445 (541)
Q Consensus 375 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 445 (541)
.+... +..|. +...+...+.+.++.+.|..++.+. ...+. ..++..+...-.+.|+.++|..++++++
T Consensus 409 s~~~~-~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~ 485 (652)
T KOG2376|consen 409 SILEA-KHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELV 485 (652)
T ss_pred hhhhh-ccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHH
Confidence 44432 33344 4467778888888877666666654 12222 2344444555567899999999999999
Q ss_pred ccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048358 446 VLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIR 479 (541)
Q Consensus 446 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 479 (541)
+.+|++..+...++.+|++. +.+.|..+-+.+.
T Consensus 486 k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 486 KFNPNDTDLLVQLVTAYARL-DPEKAESLSKKLP 518 (652)
T ss_pred HhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcCC
Confidence 99999999999999999988 7888888877664
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.3e-11 Score=106.81 Aligned_cols=194 Identities=12% Similarity=0.127 Sum_probs=164.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHH
Q 048358 314 DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLV 393 (541)
Q Consensus 314 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 393 (541)
....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++...+.. +.+...+..+.
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~ 106 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN--PNNGDVLNNYG 106 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHH
Confidence 34567788899999999999999999998765 5567788888999999999999999999998742 55667788899
Q ss_pred HHHHhcCCHHHHHHHHHhC-CC--CC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHH
Q 048358 394 DLLGRAGRLDQALNIIEEM-PM--KP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWE 469 (541)
Q Consensus 394 ~~~~~~g~~~~A~~~~~~~-~~--~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 469 (541)
..+...|++++|.+.+++. .. .| ....+..+...+...|++++|...++++++..|.++..+..++.++...|+++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHH
Confidence 9999999999999999987 21 12 34567778888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCccccc
Q 048358 470 DVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMY 536 (541)
Q Consensus 470 ~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 536 (541)
+|...+++.... .|.++..+..++.++...|+.++|....+
T Consensus 187 ~A~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 227 (234)
T TIGR02521 187 DARAYLERYQQT--------------------------YNQTAESLWLGIRIARALGDVAAAQRYGA 227 (234)
T ss_pred HHHHHHHHHHHh--------------------------CCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999998653 24556667788899999998888776543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.9e-09 Score=98.06 Aligned_cols=279 Identities=11% Similarity=0.022 Sum_probs=218.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCCc---chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 048358 182 DIVAWNNLISGYARLGQMKKARMLFDKMPYTTI---VSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPA 258 (541)
Q Consensus 182 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 258 (541)
+........+-+-..+++.+..++++...+.|+ ..+..-|.++...|+..+-..+=.++++.- +-...+|-++.--
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCY 321 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHH
Confidence 444455556667778999999999998876554 456666778888898888777777777652 5566788888888
Q ss_pred HHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHhcCChHHHH
Q 048358 259 CAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAI 335 (541)
Q Consensus 259 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 335 (541)
|...|+.++|.++|......+... ...|-.+...|.-.|..++|...+....+ .....+--+.--|.+.++...|.
T Consensus 322 Yl~i~k~seARry~SKat~lD~~f-gpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPTF-GPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCccc-cHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHH
Confidence 888899999999999887665333 44788999999999999999998877633 22233344556688889999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhc-----CCCCcHhHHHHHHHHHHhcCCHHHHHHHHH
Q 048358 336 HLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDH-----HIEHKIEHYGCLVDLLGRAGRLDQALNIIE 410 (541)
Q Consensus 336 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 410 (541)
+.|.+..... |.|+...+-+.-.....+.+.+|..+|+.....- ..+-...+++.|..+|.+.+++++|+..++
T Consensus 401 ~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 401 KFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred HHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 9999988764 6677788888777778899999999999887310 111244568899999999999999999999
Q ss_pred hC-CCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 048358 411 EM-PMK-PDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYA 463 (541)
Q Consensus 411 ~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 463 (541)
.. ... .+..++.++.-.|...|+++.|++.|.+++.+.|++..+-..|..+..
T Consensus 480 ~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 480 KALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 87 333 478899999999999999999999999999999998766666665544
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.8e-09 Score=93.34 Aligned_cols=273 Identities=10% Similarity=-0.020 Sum_probs=187.6
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchH---HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 048358 181 RDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSW---TAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLP 257 (541)
Q Consensus 181 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 257 (541)
.|+.....+..++...|+.++|+..|++...-|+.+. ....-.+.+.|+.+....+...+.... +-+...|-.-..
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~ 308 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQ 308 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhh
Confidence 3556666777777777777777777776654444322 222334456677777777666665432 122222222233
Q ss_pred HHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccC--CC-ChhHHHHHHHHHHhcCChHHH
Q 048358 258 ACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMV--ER-DVVSWSTVIGGLANHGKAHKA 334 (541)
Q Consensus 258 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a 334 (541)
.....++++.|..+-+..++.. +.+...+-.-..++...|+.++|.-.|+... .| +..+|..|+.+|...|++.+|
T Consensus 309 ~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA 387 (564)
T KOG1174|consen 309 LLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEA 387 (564)
T ss_pred hhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHH
Confidence 3445567777777777666654 2345556556677888888888888888763 33 677899999999999999998
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHH-HHHh-ccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 048358 335 IHLFHEMQRLKVPPNDITFIGLL-SACA-HTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM 412 (541)
Q Consensus 335 ~~~~~~m~~~~~~p~~~~~~~l~-~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 412 (541)
.-+-+...+. ++.+..+...+. ..|. ...--++|..++++..+.. |.-....+.+...+.+.|+.++++.++++.
T Consensus 388 ~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~--P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~ 464 (564)
T KOG1174|consen 388 NALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN--PIYTPAVNLIAELCQVEGPTKDIIKLLEKH 464 (564)
T ss_pred HHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC--CccHHHHHHHHHHHHhhCccchHHHHHHHH
Confidence 8777765554 245556655552 3332 3344577888888887632 334556678888899999999999999887
Q ss_pred -CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHH
Q 048358 413 -PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLL 458 (541)
Q Consensus 413 -~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 458 (541)
...||....+.|...+...+.+++|...|..++.++|.+..+...|
T Consensus 465 L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 465 LIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred HhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 6778999999999999999999999999999999999986555444
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.6e-11 Score=103.65 Aligned_cols=227 Identities=13% Similarity=0.072 Sum_probs=184.1
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC--C-ChhHHHHHHHHHHh
Q 048358 251 SIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE--R-DVVSWSTVIGGLAN 327 (541)
Q Consensus 251 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~ 327 (541)
--..+.++|.+.|.+..|++.++...+. .|.+.||-.|...|.+..+...|+.+|.+-.+ | |+....-+.+.+-.
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHH
Confidence 3345677778888888888888777665 34566777788888888888888888888755 3 44444556777888
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHH
Q 048358 328 HGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALN 407 (541)
Q Consensus 328 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 407 (541)
.++.++|.++|+...+.. +.+......+...|.-.++++.|+.+|+++.+- | ..++..|+.+.-+|.-.+++|-++.
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G-~~speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-G-AQSPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-c-CCChHHHhhHHHHHHhhcchhhhHH
Confidence 889999999999988875 666777777778888889999999999999874 4 3466778888888888999999988
Q ss_pred HHHhC---CCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 048358 408 IIEEM---PMKPD--AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKS 482 (541)
Q Consensus 408 ~~~~~---~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 482 (541)
-|++. -..|+ ...|..+.......||+..|.+.|.-++..++++.++++.|+..-.+.|++++|..+++......
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 88876 22343 46788898889999999999999999999999999999999999999999999999999877653
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.9e-09 Score=99.86 Aligned_cols=417 Identities=13% Similarity=0.042 Sum_probs=242.4
Q ss_pred cCCchhHHHHHHHHHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcc
Q 048358 42 LSQSNFLVTKMIDVCNSGGDLAYASLLFKQVKE---PNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKF 118 (541)
Q Consensus 42 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~ 118 (541)
+.-++.+|..+.-++.++|+++.+-+.|++... .....|+.+...+...|....|+.+++.-....- -++|..
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~----~ps~~s 394 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSE----QPSDIS 394 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhccccc----CCCcch
Confidence 445788999999999999999999999998765 4556788999999999999999999988765432 033444
Q ss_pred cHHHHHHHHh-ccCCchHHHHHHHHHHHhC--C--CCchhhHHHHHHHHHcC----C-------ChHHHHHHHhhcCCC-
Q 048358 119 TLPFVIKSCA-GLLCPSLGKQIHAHVCKFG--L--KSHSITENALLDLYGKC----D-------ELIEAHKVFEEMTDR- 181 (541)
Q Consensus 119 ~~~~ll~~~~-~~~~~~~a~~~~~~~~~~g--~--~~~~~~~~~l~~~~~~~----g-------~~~~A~~~~~~~~~~- 181 (541)
.+...-+.|. +.+..+++..+-..++... . ...+..|..+.-+|... . ...++++.+++..+.
T Consensus 395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d 474 (799)
T KOG4162|consen 395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD 474 (799)
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC
Confidence 5555555554 4577777777777776621 1 11223333333333321 1 123344445544331
Q ss_pred --ChhhHHHHHHHHHhcCCHHHHHHHHhcCC----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHH
Q 048358 182 --DIVAWNNLISGYARLGQMKKARMLFDKMP----YTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPD-EISIVS 254 (541)
Q Consensus 182 --~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ 254 (541)
|..+...+.--|+..++++.|.+...+.. ..++..|..|.-++...+++.+|+.+.+..... -|+ ......
T Consensus 475 ~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E--~~~N~~l~~~ 552 (799)
T KOG4162|consen 475 PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE--FGDNHVLMDG 552 (799)
T ss_pred CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH--hhhhhhhchh
Confidence 22222222333444555555554444332 224445555555555555555555555554432 111 111111
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHcc---C-C--CChhHHHHHHHHHHhc
Q 048358 255 VLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQM---V-E--RDVVSWSTVIGGLANH 328 (541)
Q Consensus 255 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~-~--~~~~~~~~l~~~~~~~ 328 (541)
-+..-...++.+.+......+...- ...- .....++-....+....+ . + ..+.++..+.......
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~w--------e~~~-~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~ 623 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLALW--------EAEY-GVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQ 623 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHHH--------Hhhh-hHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhh
Confidence 1111122333333333333222210 0000 000111111222222222 0 0 1122232222221111
Q ss_pred C---ChHHHHHHHHHHHhCCCCCCH--------HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHH
Q 048358 329 G---KAHKAIHLFHEMQRLKVPPND--------ITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLG 397 (541)
Q Consensus 329 ~---~~~~a~~~~~~m~~~~~~p~~--------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 397 (541)
+ .++.. +...-+.|.. ..|......+.+.+..++|...+.+..+. .+-....|......+.
T Consensus 624 ~~~~~se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~ 695 (799)
T KOG4162|consen 624 LKSAGSELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLE 695 (799)
T ss_pred hhhcccccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHH
Confidence 1 11111 1111112221 23445566788889999999888888763 3556667777778889
Q ss_pred hcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHH--HHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHH
Q 048358 398 RAGRLDQALNIIEEM-PMKPD-AKIWGSLLSSCRTYSNLEIAVI--AMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSR 473 (541)
Q Consensus 398 ~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 473 (541)
..|..++|.+.|... -+.|+ +.....+...+...|+..-|.. ++..+++.+|.++++|..++.++.+.|+.++|.+
T Consensus 696 ~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aae 775 (799)
T KOG4162|consen 696 VKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAE 775 (799)
T ss_pred HHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHH
Confidence 999999999988776 77785 5788889999999999888888 9999999999999999999999999999999999
Q ss_pred HHHHhhhC
Q 048358 474 MRKLIRSK 481 (541)
Q Consensus 474 ~~~~m~~~ 481 (541)
-|....+.
T Consensus 776 cf~aa~qL 783 (799)
T KOG4162|consen 776 CFQAALQL 783 (799)
T ss_pred HHHHHHhh
Confidence 99987664
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.4e-09 Score=91.11 Aligned_cols=386 Identities=12% Similarity=0.032 Sum_probs=226.4
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHH-HH
Q 048358 80 YNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITEN-AL 158 (541)
Q Consensus 80 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~l 158 (541)
+++++..+.+..++..|++++..-.+.. +.+......+..+|....++..|...++++...- |...-|. --
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~------p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~ 84 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS------PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQ 84 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHH
Confidence 4555555666677777777777666653 3355566666666677777777777777776542 3332222 12
Q ss_pred HHHHHcCCChHHHHHHHhhcCC-CChhhHHHHHH--HHHhcCCHHHHHHHHhcCC-CCCcchHHHHHHHHHhcCChHHHH
Q 048358 159 LDLYGKCDELIEAHKVFEEMTD-RDIVAWNNLIS--GYARLGQMKKARMLFDKMP-YTTIVSWTAMISGYTHIGSYAEAL 234 (541)
Q Consensus 159 ~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~--~~~~~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 234 (541)
...+.+.+.+..|+.+...|.+ ++...-..-+. ..-..+++..+..++++.+ +.+..+.+.......+.|++++|.
T Consensus 85 AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 85 AQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred HHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHH
Confidence 3455566777777777777765 22222222222 2234667777777777776 345556666666666777777777
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCc-------------c---------------HhH
Q 048358 235 DVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLR-------------R---------------TVI 286 (541)
Q Consensus 235 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~---------------~~~ 286 (541)
+-|+...+-+---....|+..+ +..+.|+.+.|.++..+++++|+.. | +..
T Consensus 165 qkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eA 243 (459)
T KOG4340|consen 165 QKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEA 243 (459)
T ss_pred HHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHH
Confidence 7777776643233334555444 3445677777777777777765441 1 113
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHccCCC-----ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 048358 287 CNALIEMYIKCGCINQASQLFDQMVER-----DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACA 361 (541)
Q Consensus 287 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 361 (541)
+|.-...+.+.|+++.|.+.+-.|+.+ |++|...+.-.- ..+++.+..+-+.-+...+ |....||..++-.||
T Consensus 244 fNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyC 321 (459)
T KOG4340|consen 244 FNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYC 321 (459)
T ss_pred hhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHh
Confidence 344445567889999999999999653 777776654322 2345555555556666654 455689999999999
Q ss_pred ccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHH-hcCCHHHHHHHHHhCCCCCCHHHHHHHHHH--HhhcCC---HH
Q 048358 362 HTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLG-RAGRLDQALNIIEEMPMKPDAKIWGSLLSS--CRTYSN---LE 435 (541)
Q Consensus 362 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~--~~~~~~---~~ 435 (541)
+..-++.|-.++.+-....-.-.+...|+ |++++. ..-..++|.+-++.+...-....-...+.. -...++ ..
T Consensus 322 KNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R 400 (459)
T KOG4340|consen 322 KNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIR 400 (459)
T ss_pred hhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 99999999888765432110112333333 344443 345677777666655101001111111111 111111 22
Q ss_pred HHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048358 436 IAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 436 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 480 (541)
.+++-|++.+++--| +....++.|.+..++..++++|..-.+
T Consensus 401 ~ai~~Yd~~LE~YLP---VlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 401 KAVNEYDETLEKYLP---VLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHhhccccccHHHHHHHHHHHh
Confidence 334445555554322 456677788899999999999987654
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.3e-10 Score=112.73 Aligned_cols=262 Identities=16% Similarity=0.075 Sum_probs=186.3
Q ss_pred CcchHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCChH-HHHHHHHHHH---------ccCChHHHHHHHHHHHH
Q 048358 213 TIVSWTAMISGYTH-----IGSYAEALDVFRQMQMVGIEPDEI-SIVSVLPACA---------QLGSLELGEWIHMYCDK 277 (541)
Q Consensus 213 ~~~~~~~l~~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~---------~~~~~~~a~~~~~~~~~ 277 (541)
+...|...+.+-.. .+.+++|...|++..+. .|+.. .+..+..++. ..+++++|...++.+.+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 44555566655322 23467899999999866 56543 4444443332 23457899999999988
Q ss_pred hCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 048358 278 NHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE--R-DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFI 354 (541)
Q Consensus 278 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 354 (541)
.+ +.+...+..+...+...|++++|...|++..+ | +...+..+...+...|++++|...+++..+.. +.+...+.
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~~~ 410 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAAGI 410 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhhHH
Confidence 76 44677888899999999999999999999844 3 45678888999999999999999999999875 22333334
Q ss_pred HHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHH-HHHHHHhhcC
Q 048358 355 GLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPDAKIWG-SLLSSCRTYS 432 (541)
Q Consensus 355 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~-~l~~~~~~~~ 432 (541)
.++..+...|++++|...++++.... .+.+...+..+..++...|++++|...++++ +..|+..... .+...+...|
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH
Confidence 44555666899999999999987642 1224555778888999999999999999988 5556554444 4444566666
Q ss_pred CHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 048358 433 NLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKS 482 (541)
Q Consensus 433 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 482 (541)
++|...++++.+..-..+.....+...|.-.|+-+.+..+ +++.+.+
T Consensus 490 --~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 490 --ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred --HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 4888888887764422222223366677778888888877 8887765
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.35 E-value=4e-08 Score=88.49 Aligned_cols=264 Identities=13% Similarity=0.054 Sum_probs=199.4
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHH-HHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHH
Q 048358 211 YTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEIS-IVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNA 289 (541)
Q Consensus 211 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 289 (541)
+.|+.....+..++...|+..+|+..|++.+.. .|+..+ .....-.+.+.|+.+....+...+.... ..+...|-.
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV 305 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFV 305 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhh
Confidence 457888999999999999999999999998744 454433 2222233467788887777776665432 122333444
Q ss_pred HHHHHHhcCCHHHHHHHHHccCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcH
Q 048358 290 LIEMYIKCGCINQASQLFDQMVER---DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFW 366 (541)
Q Consensus 290 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 366 (541)
-+......++++.|+.+-.+.++. ++..+-.-...+...+++++|.-.|+..+... |.+...|..|+.+|...|.+
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchH
Confidence 445556678899999998888664 44455555567888999999999999988764 56788999999999999999
Q ss_pred HHHHHHHHHhhhhcCCCCcHhHHHHHH-HHHH-hcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHhhcCCHHHHHHHHH
Q 048358 367 NEGLMYFDSMKRDHHIEHKIEHYGCLV-DLLG-RAGRLDQALNIIEEM-PMKPDA-KIWGSLLSSCRTYSNLEIAVIAME 442 (541)
Q Consensus 367 ~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~ 442 (541)
.+|.-.-+...+. ++.+..+.+.+. ..+. .-.--++|.+++++. .+.|+. ...+.+...|...|..+.++.+++
T Consensus 385 kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 385 KEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 9999888877763 455666555542 2222 223358899999887 778874 566777778999999999999999
Q ss_pred HHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 443 HLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 443 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
+.+...|+ ...+..|++.+...+.+.+|.+.|......
T Consensus 463 ~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 463 KHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 99998877 568899999999999999999999887653
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.3e-10 Score=108.05 Aligned_cols=231 Identities=15% Similarity=0.154 Sum_probs=164.1
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHh-----CC-CccH-hHHHHHHHHHHhcCCHHHHHHHHHccCC-------C--
Q 048358 250 ISIVSVLPACAQLGSLELGEWIHMYCDKN-----HL-LRRT-VICNALIEMYIKCGCINQASQLFDQMVE-------R-- 313 (541)
Q Consensus 250 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~-- 313 (541)
.+...+...|...|+++.|...++...+. |. .|.. ...+.+...|...+++.+|..+|+++.. +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34455666666666666666666655543 11 1222 2344577788888888888888877732 1
Q ss_pred --ChhHHHHHHHHHHhcCChHHHHHHHHHHHhC-----CC-CCCHH-HHHHHHHHHhccCcHHHHHHHHHHhhhhcC--C
Q 048358 314 --DVVSWSTVIGGLANHGKAHKAIHLFHEMQRL-----KV-PPNDI-TFIGLLSACAHTGFWNEGLMYFDSMKRDHH--I 382 (541)
Q Consensus 314 --~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~~-~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~ 382 (541)
-..+++.|...|.+.|++++|..++++..+. |. .|... .++.+...|+..+.++.|..+++...+... +
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 2346777888888889988888877765431 21 22322 356677778899999999999887765322 1
Q ss_pred CC----cHhHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhcc-
Q 048358 383 EH----KIEHYGCLVDLLGRAGRLDQALNIIEEM---------PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVL- 447 (541)
Q Consensus 383 ~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 447 (541)
.+ -..+++.|...|...|++++|.++++++ +..+ ....++.+...|.+.+++.+|.++|.+...+
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 12 2467899999999999999999999887 1223 2467788888999999999999999887753
Q ss_pred ---CCC---CcchHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048358 448 ---EPE---DTGNYVLLSNIYAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 448 ---~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 480 (541)
+|+ ...+|..|+.+|.+.|++++|.++.+.+..
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 344 455888999999999999999999888753
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.5e-08 Score=91.59 Aligned_cols=434 Identities=12% Similarity=0.119 Sum_probs=276.0
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhhhC-CCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHH
Q 048358 63 AYASLLFKQVKEPNVFLYNAMIRAYTNNHLYGLAINLYKQMLRD-PRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHA 141 (541)
Q Consensus 63 ~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 141 (541)
+.++-.+-+| +..|-..+..+..+|+.......|+..+.. .+ ......|...+....+.+-++.+..+++
T Consensus 92 er~lv~mHkm----pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpv-----tqH~rIW~lyl~Fv~~~~lPets~rvyr 162 (835)
T KOG2047|consen 92 ERCLVFMHKM----PRIWLDYLQFLIKQGLITRTRRTFDRALRALPV-----TQHDRIWDLYLKFVESHGLPETSIRVYR 162 (835)
T ss_pred HHHHHHHhcC----CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCch-----HhhccchHHHHHHHHhCCChHHHHHHHH
Confidence 3444444444 357888888889999999999999987754 33 5566789999999999999999999999
Q ss_pred HHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCCC----------ChhhHHHHHHHHHhcCCHH---HHHHHHhc
Q 048358 142 HVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDR----------DIVAWNNLISGYARLGQMK---KARMLFDK 208 (541)
Q Consensus 142 ~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~---~A~~~~~~ 208 (541)
..++.. | ..-+-.+..++..+++++|.+.+..+... +-..|..+.+..++.-+.- ....+++.
T Consensus 163 RYLk~~--P--~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~ 238 (835)
T KOG2047|consen 163 RYLKVA--P--EAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRG 238 (835)
T ss_pred HHHhcC--H--HHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHh
Confidence 997743 3 33566788899999999999999988752 3346666666666544332 33445555
Q ss_pred CCCC--C--cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCC--------------------
Q 048358 209 MPYT--T--IVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGS-------------------- 264 (541)
Q Consensus 209 ~~~~--~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-------------------- 264 (541)
+... | ...|++|..-|.+.|++++|..+|++..+. .-+..-|..+..+|+.-..
T Consensus 239 gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~ 316 (835)
T KOG2047|consen 239 GIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDD 316 (835)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhh
Confidence 5432 2 258999999999999999999999998766 3344445555555443211
Q ss_pred --hHHHHHHHHHHHHhC-----------CCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC---C------ChhHHHHHH
Q 048358 265 --LELGEWIHMYCDKNH-----------LLRRTVICNALIEMYIKCGCINQASQLFDQMVE---R------DVVSWSTVI 322 (541)
Q Consensus 265 --~~~a~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~------~~~~~~~l~ 322 (541)
++....-|+.+...+ -+.++..|..-+. +..|+..+-...|.+..+ | -...|..+.
T Consensus 317 ~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~fa 394 (835)
T KOG2047|consen 317 VDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFA 394 (835)
T ss_pred hhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHH
Confidence 122222233332221 0112222222221 223445555555555522 1 223677888
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHhhhhc----------CCC------
Q 048358 323 GGLANHGKAHKAIHLFHEMQRLKVPPN---DITFIGLLSACAHTGFWNEGLMYFDSMKRDH----------HIE------ 383 (541)
Q Consensus 323 ~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----------~~~------ 383 (541)
..|-..|+.+.|..+|++..+...+-- ..+|..-...-.+..+++.|..+++...... +.+
T Consensus 395 klYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlh 474 (835)
T KOG2047|consen 395 KLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLH 474 (835)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHH
Confidence 888889999999999988876542211 2334444444456677888888877765321 001
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccC--CCCcchHHHHH
Q 048358 384 HKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMK-PDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLE--PEDTGNYVLLS 459 (541)
Q Consensus 384 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~l~ 459 (541)
.+...|..+++.....|-++....+++++ .++ .++.......-.+..+.-++++.++|++.+.+. |.-.+.|+..+
T Consensus 475 rSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYL 554 (835)
T KOG2047|consen 475 RSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYL 554 (835)
T ss_pred HhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHH
Confidence 12344666777777788888888888887 211 123222233333456667888999999888876 33455677666
Q ss_pred HHHHh---cCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCccccc
Q 048358 460 NIYAK---HGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMY 536 (541)
Q Consensus 460 ~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 536 (541)
..+.+ ..+.+.|..+|++..+ +-+|. ....+|.+.+.+-++.|....|+.+++
T Consensus 555 tkfi~rygg~klEraRdLFEqaL~-~Cpp~-----------------------~aKtiyLlYA~lEEe~GLar~amsiye 610 (835)
T KOG2047|consen 555 TKFIKRYGGTKLERARDLFEQALD-GCPPE-----------------------HAKTIYLLYAKLEEEHGLARHAMSIYE 610 (835)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHh-cCCHH-----------------------HHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 65554 2368889999998887 33221 224567777777777777777776665
Q ss_pred c
Q 048358 537 E 537 (541)
Q Consensus 537 ~ 537 (541)
+
T Consensus 611 r 611 (835)
T KOG2047|consen 611 R 611 (835)
T ss_pred H
Confidence 4
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2e-08 Score=97.56 Aligned_cols=365 Identities=12% Similarity=0.068 Sum_probs=221.2
Q ss_pred CCCchhhHHHHHHHHHcCCChHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCC--c---chHHH
Q 048358 148 LKSHSITENALLDLYGKCDELIEAHKVFEEMTD---RDIVAWNNLISGYARLGQMKKARMLFDKMPYTT--I---VSWTA 219 (541)
Q Consensus 148 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~---~~~~~ 219 (541)
+..+..+|..|.-+..++|++..+-+.|++... .....|+.+...+.-.|.-..|..+++....+. + ..+-.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 456777788888888888888888888888765 345678888888888888888888887654322 2 22222
Q ss_pred HHHHH-HhcCChHHHHHHHHHHHHC--CC--CCChHHHHHHHHHHHcc----C-------ChHHHHHHHHHHHHhCCCcc
Q 048358 220 MISGY-THIGSYAEALDVFRQMQMV--GI--EPDEISIVSVLPACAQL----G-------SLELGEWIHMYCDKNHLLRR 283 (541)
Q Consensus 220 l~~~~-~~~g~~~~A~~~~~~m~~~--~~--~p~~~~~~~ll~~~~~~----~-------~~~~a~~~~~~~~~~~~~~~ 283 (541)
.-..| -+.+..++++++-.+.... +. ......|..+.-+|... . ...++.+.++.+.+.+.. |
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-d 477 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-D 477 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-C
Confidence 22223 3456677777776666552 11 11222333333333211 1 123556666666665533 2
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHccC----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCC-----------
Q 048358 284 TVICNALIEMYIKCGCINQASQLFDQMV----ERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRL-KVP----------- 347 (541)
Q Consensus 284 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~----------- 347 (541)
+.+.-.+.--|+..++++.|....++.. ..++..|..|.-.+...+++.+|+.+.+..... |..
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~ 557 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIE 557 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhh
Confidence 2222334445677778888887777653 346778888888888888888888887765443 110
Q ss_pred -------CCHHHHHHHHHHHhc---------c--------------CcHHHHHHHHHHhh-------hhcC---------
Q 048358 348 -------PNDITFIGLLSACAH---------T--------------GFWNEGLMYFDSMK-------RDHH--------- 381 (541)
Q Consensus 348 -------p~~~~~~~l~~~~~~---------~--------------g~~~~a~~~~~~~~-------~~~~--------- 381 (541)
--..|...++...-. . ++..++......+. +..+
T Consensus 558 ~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~ 637 (799)
T KOG4162|consen 558 LTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSST 637 (799)
T ss_pred hhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccc
Confidence 000111111111110 0 01111111111100 0000
Q ss_pred CCC--c------HhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC
Q 048358 382 IEH--K------IEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPED 451 (541)
Q Consensus 382 ~~~--~------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (541)
..| + ...|......+.+.+..++|...+.+. ++.| ....|......+...|+.++|.+.|..++.++|++
T Consensus 638 ~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~h 717 (799)
T KOG4162|consen 638 VLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDH 717 (799)
T ss_pred ccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCC
Confidence 011 1 123445566677777777777655555 4445 34555555566777888888888888888888888
Q ss_pred cchHHHHHHHHHhcCCHHHHHH--HHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhccc
Q 048358 452 TGNYVLLSNIYAKHGRWEDVSR--MRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAK 529 (541)
Q Consensus 452 ~~~~~~l~~~~~~~g~~~~A~~--~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 529 (541)
+.....++.++.+.|+..-|.. ++..+.+ .+|.+.++|..||.+...+|+.+
T Consensus 718 v~s~~Ala~~lle~G~~~la~~~~~L~dalr--------------------------~dp~n~eaW~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 718 VPSMTALAELLLELGSPRLAEKRSLLSDALR--------------------------LDPLNHEAWYYLGEVFKKLGDSK 771 (799)
T ss_pred cHHHHHHHHHHHHhCCcchHHHHHHHHHHHh--------------------------hCCCCHHHHHHHHHHHHHccchH
Confidence 8888888888888887666666 6666654 57999999999999999999999
Q ss_pred CCcccccccC
Q 048358 530 DVIDIMYEDI 539 (541)
Q Consensus 530 ~a~~~~~~~i 539 (541)
+|.+.+..++
T Consensus 772 ~Aaecf~aa~ 781 (799)
T KOG4162|consen 772 QAAECFQAAL 781 (799)
T ss_pred HHHHHHHHHH
Confidence 9988776544
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.3e-07 Score=88.54 Aligned_cols=448 Identities=15% Similarity=0.078 Sum_probs=272.9
Q ss_pred hHHHHHHhccChh--HHHHHHHHHHHhccCCchhHHHHHHHHHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHcC
Q 048358 16 RFVPILQSCENLI--ELKKIHTQILKYLLSQSNFLVTKMIDVCNSGGDLAYASLLFKQVKE---PNVFLYNAMIRAYTNN 90 (541)
Q Consensus 16 ~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~ 90 (541)
.|..++.++..-+ ..-.+.+.+++ +++-...+....--.+...|+-++|......... .+.+.|+++.-.+-..
T Consensus 10 lF~~~lk~yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 10 LFRRALKCYETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence 4555666553222 12233444444 4444555555555556777999999999988776 4567799888888888
Q ss_pred CChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHH
Q 048358 91 HLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIE 170 (541)
Q Consensus 91 g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~ 170 (541)
.++++|+..|......+ +.|...+.-+.-.-++.|+++..........+.. +.....|..++.++.-.|+...
T Consensus 89 K~Y~eaiKcy~nAl~~~------~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~ 161 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIE------KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKM 161 (700)
T ss_pred hhHHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999886 6677777777777778899999988888888764 3345567778888888899999
Q ss_pred HHHHHhhcCC-----CChhhHHH------HHHHHHhcCCHHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChHHHHHH
Q 048358 171 AHKVFEEMTD-----RDIVAWNN------LISGYARLGQMKKARMLFDKMPYT---TIVSWTAMISGYTHIGSYAEALDV 236 (541)
Q Consensus 171 A~~~~~~~~~-----~~~~~~~~------l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~ 236 (541)
|..+++...+ ++...+.. -.....+.|.+++|.+.+..-... ....-..-...+.+.++.++|..+
T Consensus 162 A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~ 241 (700)
T KOG1156|consen 162 ALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKV 241 (700)
T ss_pred HHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHH
Confidence 9998887754 34433332 234566788888888887765432 122333456778899999999999
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHH-ccCC-hHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHH-HHHHHHHccCCC
Q 048358 237 FRQMQMVGIEPDEISIVSVLPACA-QLGS-LELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCIN-QASQLFDQMVER 313 (541)
Q Consensus 237 ~~~m~~~~~~p~~~~~~~ll~~~~-~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~ 313 (541)
++.++.. .||..-|...+..+. +..+ .+....+|....+.- +. ...-..+--......++. ..-+++....+.
T Consensus 242 y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y-~r-~e~p~Rlplsvl~~eel~~~vdkyL~~~l~K 317 (700)
T KOG1156|consen 242 YRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY-PR-HECPRRLPLSVLNGEELKEIVDKYLRPLLSK 317 (700)
T ss_pred HHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC-cc-cccchhccHHHhCcchhHHHHHHHHHHHhhc
Confidence 9999987 677777776555544 2333 333335555444321 11 110000100111111222 222333333222
Q ss_pred -ChhHHHHHHHHHHhcCChHHHHHHHHHHHh----CC----------CCCCHH--HHHHHHHHHhccCcHHHHHHHHHHh
Q 048358 314 -DVVSWSTVIGGLANHGKAHKAIHLFHEMQR----LK----------VPPNDI--TFIGLLSACAHTGFWNEGLMYFDSM 376 (541)
Q Consensus 314 -~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~----~~----------~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~ 376 (541)
-+.++..+...|-.....+-..++...+.. .| -+|... ++..++..+-+.|+++.|..+++..
T Consensus 318 g~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~A 397 (700)
T KOG1156|consen 318 GVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLA 397 (700)
T ss_pred CCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 233444444444332222211111111111 11 145443 3445677788889999999988888
Q ss_pred hhhcCCCCc-HhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC---
Q 048358 377 KRDHHIEHK-IEHYGCLVDLLGRAGRLDQALNIIEEM-PMK-PDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPE--- 450 (541)
Q Consensus 377 ~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--- 450 (541)
... .|+ +..|..-.+.+...|++++|..++++. .++ ||...=.--..-..+.++.++|.++.....+.+.+
T Consensus 398 IdH---TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~ 474 (700)
T KOG1156|consen 398 IDH---TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVN 474 (700)
T ss_pred hcc---CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhh
Confidence 753 344 456666678888889999999988887 332 34333223444456778888888888776654421
Q ss_pred C----cchHHHH--HHHHHhcCCHHHHHHHHHHh
Q 048358 451 D----TGNYVLL--SNIYAKHGRWEDVSRMRKLI 478 (541)
Q Consensus 451 ~----~~~~~~l--~~~~~~~g~~~~A~~~~~~m 478 (541)
+ .-.|..+ +.+|.++|++-.|++-+..+
T Consensus 475 ~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 475 NLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred hHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 1 1133332 44677787777777554444
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1e-10 Score=101.51 Aligned_cols=233 Identities=9% Similarity=0.015 Sum_probs=196.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHh
Q 048358 217 WTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIK 296 (541)
Q Consensus 217 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 296 (541)
-+.+.++|.+.|.+.+|.+.|+..+.. .|-..||..+-+.|.+..++..|..++.+-.+. ++.++.........+..
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 356889999999999999999998877 788889999999999999999999999887765 35566666778888999
Q ss_pred cCCHHHHHHHHHccCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 048358 297 CGCINQASQLFDQMVER---DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYF 373 (541)
Q Consensus 297 ~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 373 (541)
.++.++|.++|+...+. |+.+...+...|...++++-|+.+|+++.+.| .-++..|+.+.-+|.-.+.++-++.-|
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHHH
Confidence 99999999999998653 56666677788999999999999999999999 457888999999999999999999999
Q ss_pred HHhhhhcCCCCc--HhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCC
Q 048358 374 DSMKRDHHIEHK--IEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEP 449 (541)
Q Consensus 374 ~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 449 (541)
++.... --.|+ ..+|..+....+..|++.-|.+.|+-. .-.| ....++.|.-.-.+.|++++|..++..+.+..|
T Consensus 382 ~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 382 QRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 888763 22233 466888999999999999999999887 3344 468899998888999999999999999999888
Q ss_pred CCcch
Q 048358 450 EDTGN 454 (541)
Q Consensus 450 ~~~~~ 454 (541)
.-.+.
T Consensus 461 ~m~E~ 465 (478)
T KOG1129|consen 461 DMAEV 465 (478)
T ss_pred ccccc
Confidence 74443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-09 Score=106.79 Aligned_cols=245 Identities=14% Similarity=0.087 Sum_probs=114.3
Q ss_pred HHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcC
Q 048358 100 YKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMT 179 (541)
Q Consensus 100 ~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 179 (541)
+-.+...|+ .|+..||..++.-|+..|+.+.|- +|.-|.-...+.+...++.++..+...++.+.+.
T Consensus 13 la~~e~~gi-----~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk------- 79 (1088)
T KOG4318|consen 13 LALHEISGI-----LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK------- 79 (1088)
T ss_pred HHHHHHhcC-----CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------
Confidence 344444454 555555555555555555555554 5555544444444555555555555555544443
Q ss_pred CCChhhHHHHHHHHHhcCCHHH-----------------------HHHHHhcCC--CCCcchHHHHHHHHHhcCChHHHH
Q 048358 180 DRDIVAWNNLISGYARLGQMKK-----------------------ARMLFDKMP--YTTIVSWTAMISGYTHIGSYAEAL 234 (541)
Q Consensus 180 ~~~~~~~~~l~~~~~~~~~~~~-----------------------A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 234 (541)
.|...+|..|..+|.+.|++.. -..++-.+. ..-...-...+......|-++.++
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLL 159 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555432 222222211 000111122333334445555555
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCC-
Q 048358 235 DVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVER- 313 (541)
Q Consensus 235 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 313 (541)
+++..+.... .+. ++..+++-+... ..-.+++........-.++..+|..++..-...|+.+.|..++.+|.+.
T Consensus 160 kll~~~Pvsa--~~~-p~~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~g 234 (1088)
T KOG4318|consen 160 KLLAKVPVSA--WNA-PFQVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKG 234 (1088)
T ss_pred HHHhhCCccc--ccc-hHHHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcC
Confidence 5554443221 000 111112222221 1222223322222211456666666666666666666666666666442
Q ss_pred ---ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc
Q 048358 314 ---DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGF 365 (541)
Q Consensus 314 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 365 (541)
+..-|..|+-+ .++...+..+++-|.+.|+.|+..|+...+..+.+.|.
T Consensus 235 fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 235 FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred CCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 22223333322 55566666666666666666666666666655555433
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.9e-10 Score=111.49 Aligned_cols=228 Identities=13% Similarity=-0.014 Sum_probs=172.3
Q ss_pred ChHHHHHHHHHHH-----ccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHh---------cCCHHHHHHHHHccCC-
Q 048358 248 DEISIVSVLPACA-----QLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIK---------CGCINQASQLFDQMVE- 312 (541)
Q Consensus 248 ~~~~~~~ll~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~- 312 (541)
+...|...+.+.. ..++.+.|...++++.+... .+...|..+..+|.. .+++++|...+++..+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP-~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSP-NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 4444555555532 12346789999999887653 335566666665542 3458899999998855
Q ss_pred -C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHH
Q 048358 313 -R-DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYG 390 (541)
Q Consensus 313 -~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 390 (541)
| +..++..+...+...|++++|...|++..+.+ |.+...+..+..++...|++++|+..+++..+.. |.+...+.
T Consensus 334 dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~ 410 (553)
T PRK12370 334 DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGI 410 (553)
T ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHH
Confidence 3 66788888888999999999999999999876 5567788888999999999999999999998753 22333334
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-C-CCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 048358 391 CLVDLLGRAGRLDQALNIIEEM-P-MKPD-AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGR 467 (541)
Q Consensus 391 ~l~~~~~~~g~~~~A~~~~~~~-~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 467 (541)
.++..+...|++++|...+++. . ..|+ ...+..+..++...|+.++|...++++....|.+......++..|...|
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 489 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS- 489 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH-
Confidence 4455677789999999999887 2 2354 4456667777889999999999999988888888888888888888888
Q ss_pred HHHHHHHHHHhhhC
Q 048358 468 WEDVSRMRKLIRSK 481 (541)
Q Consensus 468 ~~~A~~~~~~m~~~ 481 (541)
++|...++.+.+.
T Consensus 490 -~~a~~~l~~ll~~ 502 (553)
T PRK12370 490 -ERALPTIREFLES 502 (553)
T ss_pred -HHHHHHHHHHHHH
Confidence 5888888887654
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.5e-09 Score=98.69 Aligned_cols=189 Identities=15% Similarity=0.118 Sum_probs=101.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHccCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 048358 285 VICNALIEMYIKCGCINQASQLFDQMVE--R-DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACA 361 (541)
Q Consensus 285 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 361 (541)
..|..+...|...|+.++|...|++..+ | ++..|+.+...+...|++++|...|++..+.. +-+..++..+..++.
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3455556666666666666666665533 2 44566666666667777777777777666643 334455666666666
Q ss_pred ccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHhhcCCHHHHHH
Q 048358 362 HTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM--PMKPDAKIWGSLLSSCRTYSNLEIAVI 439 (541)
Q Consensus 362 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~ 439 (541)
..|++++|.+.|+...+.. |+..........+...++.++|...|++. ...|+...+ .+.. ...|+...+ +
T Consensus 144 ~~g~~~eA~~~~~~al~~~---P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~-~~~~--~~lg~~~~~-~ 216 (296)
T PRK11189 144 YGGRYELAQDDLLAFYQDD---PNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGW-NIVE--FYLGKISEE-T 216 (296)
T ss_pred HCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHH-HHHH--HHccCCCHH-H
Confidence 6677777777776666532 22211111122233455667777666543 222222211 1111 223333222 1
Q ss_pred HHHHHh-------ccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 440 AMEHLL-------VLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 440 ~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
.++.+. +..|..+.+|..++..+.+.|++++|...|++..+.
T Consensus 217 ~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 217 LMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 222222 233445566777777777777777777777776654
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.2e-10 Score=108.92 Aligned_cols=237 Identities=16% Similarity=0.141 Sum_probs=181.2
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHccCCC----------Chh-HHHHHHHHHHhcCChHHHHHHHHHHHhC-----C--
Q 048358 284 TVICNALIEMYIKCGCINQASQLFDQMVER----------DVV-SWSTVIGGLANHGKAHKAIHLFHEMQRL-----K-- 345 (541)
Q Consensus 284 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~-- 345 (541)
..+...+...|...|+++.|..+++...+. .+. ..+.+...|...+++.+|..+|+++... |
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 456667999999999999999999877432 222 3344677899999999999999998652 2
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhc----C-CCCcH-hHHHHHHHHHHhcCCHHHHHHHHHhC-------
Q 048358 346 VPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDH----H-IEHKI-EHYGCLVDLLGRAGRLDQALNIIEEM------- 412 (541)
Q Consensus 346 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~------- 412 (541)
.+--..+++.|..+|.+.|++++|..+++...+-. + ..|.+ ..++.++..+...+++++|..++...
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 11123467788888999999999988887765421 1 12222 23567778889999999999988875
Q ss_pred -C-CCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccC--------CCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 413 -P-MKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLE--------PEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 413 -~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
+ ..| -..++..|...|...|++++|.++++++++.. +....+++.|+..|.+.+++.+|.++|.+...-
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 1 112 24778999999999999999999999998643 222447889999999999999999999987654
Q ss_pred CCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCcccccccC
Q 048358 482 SMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMYEDI 539 (541)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~i 539 (541)
. +..| .-+|+....|..|+-+|..+|++++|+++.+.++
T Consensus 439 ~--~~~g-----------------~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 M--KLCG-----------------PDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred H--HHhC-----------------CCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3 2111 2579999999999999999999999999887665
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.8e-11 Score=78.94 Aligned_cols=50 Identities=30% Similarity=0.660 Sum_probs=44.5
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHc
Q 048358 212 TTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQ 261 (541)
Q Consensus 212 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 261 (541)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888999999999999999999999999999999999999999888864
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.4e-08 Score=93.18 Aligned_cols=397 Identities=13% Similarity=0.034 Sum_probs=215.1
Q ss_pred HHHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhcc
Q 048358 54 DVCNSGGDLAYASLLFKQVKE---PNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGL 130 (541)
Q Consensus 54 ~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~ 130 (541)
++....|+++.|..+|-.... +|.+.|..-..+|+..|++++|+.=-.+-++.. |.-+..|.....++.-.
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~------p~w~kgy~r~Gaa~~~l 83 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN------PDWAKGYSRKGAALFGL 83 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC------CchhhHHHHhHHHHHhc
Confidence 345667888888888876543 567778778888888888888887777666653 44456788888888888
Q ss_pred CCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHH-HHHhhcCCCChhhHH-----HHHHHHHhcCCHHHHHH
Q 048358 131 LCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAH-KVFEEMTDRDIVAWN-----NLISGYARLGQMKKARM 204 (541)
Q Consensus 131 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~A~~ 204 (541)
|++++|...|.+-++.. +.+...++.+..++. .+.+. +.|. .| ..|. .+.+.+.....+..-++
T Consensus 84 g~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~----~~~~~~~~~~---~p--~~~~~l~~~p~t~~~~~~~~~~~~l~ 153 (539)
T KOG0548|consen 84 GDYEEAILAYSEGLEKD-PSNKQLKTGLAQAYL----EDYAADQLFT---KP--YFHEKLANLPLTNYSLSDPAYVKILE 153 (539)
T ss_pred ccHHHHHHHHHHHhhcC-CchHHHHHhHHHhhh----HHHHhhhhcc---Cc--HHHHHhhcChhhhhhhccHHHHHHHH
Confidence 88888888888887764 445666677776661 11111 1110 01 0110 01111111111111111
Q ss_pred HHhcCCCCCcch---HHHHHHHHHhcCChHH-HHHHH------------HHHHHCC-----------CCCChHHHHHHHH
Q 048358 205 LFDKMPYTTIVS---WTAMISGYTHIGSYAE-ALDVF------------RQMQMVG-----------IEPDEISIVSVLP 257 (541)
Q Consensus 205 ~~~~~~~~~~~~---~~~l~~~~~~~g~~~~-A~~~~------------~~m~~~~-----------~~p~~~~~~~ll~ 257 (541)
.+..-+. ++-. ...++.+.......+. ....- ..+.... ..--..-...+.+
T Consensus 154 ~~~~~p~-~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgn 232 (539)
T KOG0548|consen 154 IIQKNPT-SLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGN 232 (539)
T ss_pred HhhcCcH-hhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHH
Confidence 1111100 0000 0001110000000000 00000 0000000 0001112334555
Q ss_pred HHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChh----------HHHHHHHHHHh
Q 048358 258 ACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERDVV----------SWSTVIGGLAN 327 (541)
Q Consensus 258 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~l~~~~~~ 327 (541)
+..+..+++.+.+.+....... .+..-++....+|...|.+...........+..-. .+..+..+|.+
T Consensus 233 aaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k 310 (539)
T KOG0548|consen 233 AAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTK 310 (539)
T ss_pred HHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 5566666777777777666655 44555566666677777666666555444332111 12223345556
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcH-hHHHHHHHHHHhcCCHHHHH
Q 048358 328 HGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKI-EHYGCLVDLLGRAGRLDQAL 406 (541)
Q Consensus 328 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~ 406 (541)
.++++.++..|.+.......|+..+ +....+++....+...- +.|.. .-...-...+.+.|++..|+
T Consensus 311 ~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a~---~~pe~A~e~r~kGne~Fk~gdy~~Av 378 (539)
T KOG0548|consen 311 REDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKAY---INPEKAEEEREKGNEAFKKGDYPEAV 378 (539)
T ss_pred HHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHHh---hChhHHHHHHHHHHHHHhccCHHHHH
Confidence 6777777777777555433333221 22233333333333221 12221 11222355667788888888
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 407 NIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 407 ~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
+.|.++ ...| |...|..-..+|.+.|.+..|+.-.+..++++|+....|..=+.++....+|++|.+.|++.++.
T Consensus 379 ~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 379 KHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888777 4455 56777777778888888888888888888888888888888788888888888888888876654
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.5e-07 Score=89.90 Aligned_cols=425 Identities=12% Similarity=0.037 Sum_probs=270.4
Q ss_pred HHHHHHHHHHcCCChHHHHHHHhcCCCCC---cchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHH
Q 048358 48 LVTKMIDVCNSGGDLAYASLLFKQVKEPN---VFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVI 124 (541)
Q Consensus 48 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll 124 (541)
.+..++..|-. +++...+++.+.+.+.. ..|.....-.+...|+-++|.+....-.+.. ..+..+|+.+.
T Consensus 10 lF~~~lk~yE~-kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d------~~S~vCwHv~g 82 (700)
T KOG1156|consen 10 LFRRALKCYET-KQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND------LKSHVCWHVLG 82 (700)
T ss_pred HHHHHHHHHHH-HHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccC------cccchhHHHHH
Confidence 34445555433 45555555555444311 1122222223556788999999888887765 56788899988
Q ss_pred HHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHH
Q 048358 125 KSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTD---RDIVAWNNLISGYARLGQMKK 201 (541)
Q Consensus 125 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 201 (541)
-.+....++++|.+.|..++..+ +.|...+.-+.-.-++.|+++..........+ .....|..++.++--.|+...
T Consensus 83 l~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~ 161 (700)
T KOG1156|consen 83 LLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKM 161 (700)
T ss_pred HHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 88888899999999999999976 45777887777777788888888777777665 345688888888888999999
Q ss_pred HHHHHhcCCC-----CCcchHHHH------HHHHHhcCChHHHHHHHHHHHHCCCCCChHHHH-HHHHHHHccCChHHHH
Q 048358 202 ARMLFDKMPY-----TTIVSWTAM------ISGYTHIGSYAEALDVFRQMQMVGIEPDEISIV-SVLPACAQLGSLELGE 269 (541)
Q Consensus 202 A~~~~~~~~~-----~~~~~~~~l------~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~ll~~~~~~~~~~~a~ 269 (541)
|..+++...+ ++...+... .......|..++|.+.+..-... ..|...+. .-...+.+.+++++|.
T Consensus 162 A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~ 239 (700)
T KOG1156|consen 162 ALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAV 239 (700)
T ss_pred HHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHH
Confidence 9888876642 333333322 23456678888888877665432 22333332 3445577889999999
Q ss_pred HHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHH-HHHHccCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 048358 270 WIHMYCDKNHLLRRTVICNALIEMYIKCGCINQAS-QLFDQMVER---DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLK 345 (541)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 345 (541)
.++..+.... +.+...|..+..++.+-.+.-++. .+|....+. ....-..=+.......-.+..-+++..+.+.|
T Consensus 240 ~~y~~Ll~rn-Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 240 KVYRRLLERN-PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHHHHHHhhC-chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcC
Confidence 9999888765 333444445555554333333333 566555321 00000000111111122344456777888888
Q ss_pred CCCCHHHHHHHHHHHhccCcHHH-HHHHHHHhhhhc---------CCCCcHhHHH--HHHHHHHhcCCHHHHHHHHHhC-
Q 048358 346 VPPNDITFIGLLSACAHTGFWNE-GLMYFDSMKRDH---------HIEHKIEHYG--CLVDLLGRAGRLDQALNIIEEM- 412 (541)
Q Consensus 346 ~~p~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~---------~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~- 412 (541)
+++--..+..+-.-=.+..-.++ +..+...+.... .-+|....|. .++..|-+.|+++.|..+++..
T Consensus 319 ~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI 398 (700)
T KOG1156|consen 319 VPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI 398 (700)
T ss_pred CCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 77644433333221111111111 122222221110 0156655554 5677888999999999999988
Q ss_pred CCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 048358 413 PMKPDA-KIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSM 483 (541)
Q Consensus 413 ~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 483 (541)
+-.|+. ..|..-...+...|++++|...++++.+++..|...-.--+....++.+.++|.++.-..-..|.
T Consensus 399 dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 399 DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 666765 44555556789999999999999999999988776666788888999999999999998877765
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.5e-07 Score=91.86 Aligned_cols=411 Identities=12% Similarity=0.084 Sum_probs=246.1
Q ss_pred HHHHHHHcCCChHHHHHHHhcCCC--CCcch-HHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHH
Q 048358 51 KMIDVCNSGGDLAYASLLFKQVKE--PNVFL-YNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSC 127 (541)
Q Consensus 51 ~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~-~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~ 127 (541)
.....+...|++++|++.++.-.. .|..+ .......+.+.|+.++|..+|..+++.+ |.+..-|..+..+.
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN------Pdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN------PDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC------CCcHHHHHHHHHHH
Confidence 344567888999999999987654 45444 4566678889999999999999999885 44444444444444
Q ss_pred hcc-----CCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChH-HHHHHHhhcCCCCh-hhHHHHHHHHHhcCCHH
Q 048358 128 AGL-----LCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELI-EAHKVFEEMTDRDI-VAWNNLISGYARLGQMK 200 (541)
Q Consensus 128 ~~~-----~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~ 200 (541)
... .+.+....+++++...- |.......+.-.+..-..+. .+...+..+...++ ..|+.+-..|....+.+
T Consensus 83 g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 83 GLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAA 160 (517)
T ss_pred hhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHH
Confidence 222 24566677888776653 22222222221222211222 23333444444444 34555555555444444
Q ss_pred HHHHHHhcCC------------------CCCc--chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHH
Q 048358 201 KARMLFDKMP------------------YTTI--VSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPD-EISIVSVLPAC 259 (541)
Q Consensus 201 ~A~~~~~~~~------------------~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~ 259 (541)
-..+++.... .|.. .++..+...|-..|++++|++++++..++ .|+ ...|..-.+.+
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~Karil 238 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARIL 238 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH
Confidence 4444443321 1222 34566778888999999999999999987 565 55777788889
Q ss_pred HccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChh----------HH--HHHHHHHHh
Q 048358 260 AQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERDVV----------SW--STVIGGLAN 327 (541)
Q Consensus 260 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------~~--~~l~~~~~~ 327 (541)
-..|++.+|...++.+...+. -|..+-+..+..+.+.|++++|.+++....+++.. .| .....+|.+
T Consensus 239 Kh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r 317 (517)
T PF12569_consen 239 KHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR 317 (517)
T ss_pred HHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988763 35667777888899999999999999888665421 22 334678889
Q ss_pred cCChHHHHHHHHHHHhC--CC---CCC----------HHHHHHHHHHHhccC-------cHHHHHHHHHHhhhhcCCCC-
Q 048358 328 HGKAHKAIHLFHEMQRL--KV---PPN----------DITFIGLLSACAHTG-------FWNEGLMYFDSMKRDHHIEH- 384 (541)
Q Consensus 328 ~~~~~~a~~~~~~m~~~--~~---~p~----------~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~~~~~~~~- 384 (541)
.|++..|++-|....+. .+ +-| ..+|..+++..-+.. -...|+++|-.+........
T Consensus 318 ~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~ 397 (517)
T PF12569_consen 318 QGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQG 397 (517)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccc
Confidence 99999998877665432 01 222 233344443322111 12344555555543211000
Q ss_pred ----------cHhHHHHHHHHH---HhcCCHHHHHHHHH-----------hC------CCCCCHHHHHHHHHHHhhc-CC
Q 048358 385 ----------KIEHYGCLVDLL---GRAGRLDQALNIIE-----------EM------PMKPDAKIWGSLLSSCRTY-SN 433 (541)
Q Consensus 385 ----------~~~~~~~l~~~~---~~~g~~~~A~~~~~-----------~~------~~~p~~~~~~~l~~~~~~~-~~ 433 (541)
+..--..+..-. .+...-+++.+.-. .. +..||+ +..-+.+. .-
T Consensus 398 ~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp-----~GekL~~t~dP 472 (517)
T PF12569_consen 398 EEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDP-----LGEKLLKTEDP 472 (517)
T ss_pred cccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCc-----cHHHHhcCCcH
Confidence 000001111100 11111111111110 00 112222 11222233 45
Q ss_pred HHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHH
Q 048358 434 LEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKL 477 (541)
Q Consensus 434 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 477 (541)
.++|.++++-+.+..|++..+|..-..+|.+.|++-.|++.+.+
T Consensus 473 Le~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 473 LEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 68999999999999999999999999999999999999887764
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.1e-11 Score=77.78 Aligned_cols=50 Identities=32% Similarity=0.590 Sum_probs=44.8
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 048358 313 RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAH 362 (541)
Q Consensus 313 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 362 (541)
||+.+||+++.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67889999999999999999999999999999999999999999998875
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.2e-09 Score=89.15 Aligned_cols=162 Identities=12% Similarity=0.076 Sum_probs=107.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHH
Q 048358 318 WSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLG 397 (541)
Q Consensus 318 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 397 (541)
...|.-.|...|+...|..-+++.++.. |.+..++..+...|.+.|..+.|.+.|+...+. -+.+..+.|....-+|
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC 114 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHH
Confidence 3345556666777777777777776665 445556666666677777777777777776653 2445556666677777
Q ss_pred hcCCHHHHHHHHHhCCCCC----CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHH
Q 048358 398 RAGRLDQALNIIEEMPMKP----DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSR 473 (541)
Q Consensus 398 ~~g~~~~A~~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 473 (541)
..|++++|...|++.-..| -..+|..+..+..+.|+.+.|...|++.++.+|..+.....++......|++-.|..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 7777777777777662222 245666666666677777777777777777777777777777777777777777777
Q ss_pred HHHHhhhCC
Q 048358 474 MRKLIRSKS 482 (541)
Q Consensus 474 ~~~~m~~~~ 482 (541)
.++.....+
T Consensus 195 ~~~~~~~~~ 203 (250)
T COG3063 195 YLERYQQRG 203 (250)
T ss_pred HHHHHHhcc
Confidence 777665543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.8e-09 Score=99.70 Aligned_cols=216 Identities=11% Similarity=0.017 Sum_probs=153.6
Q ss_pred CHHHHHHHHHccCC-----C--ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 048358 299 CINQASQLFDQMVE-----R--DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLM 371 (541)
Q Consensus 299 ~~~~A~~~~~~~~~-----~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 371 (541)
..+.+...+.++.. + ....|..+...|...|+.++|...|++..+.. +.+...|+.+...+...|+++.|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 44555555555532 1 23467778888899999999999999998875 5667889999999999999999999
Q ss_pred HHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC
Q 048358 372 YFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPE 450 (541)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 450 (541)
.|+...+. -|.+...|..+..++...|++++|.+.|++. ...|+..........+...++.++|...+++.....++
T Consensus 120 ~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~ 197 (296)
T PRK11189 120 AFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDK 197 (296)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCc
Confidence 99999873 2445677888888899999999999999887 55665432222222345677899999999776654333
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccC
Q 048358 451 DTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKD 530 (541)
Q Consensus 451 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 530 (541)
+. |. ........|++.++ +.++.+.+.- .. ..++.|+..++|..||.++..+|+.++
T Consensus 198 ~~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~-~~------------------~~~l~~~~~ea~~~Lg~~~~~~g~~~~ 254 (296)
T PRK11189 198 EQ--WG-WNIVEFYLGKISEE-TLMERLKAGA-TD------------------NTELAERLCETYFYLAKYYLSLGDLDE 254 (296)
T ss_pred cc--cH-HHHHHHHccCCCHH-HHHHHHHhcC-CC------------------cHHHHHHHHHHHHHHHHHHHHCCCHHH
Confidence 22 22 23444556666554 3555544321 10 112467788999999999999999999
Q ss_pred CcccccccCC
Q 048358 531 VIDIMYEDIG 540 (541)
Q Consensus 531 a~~~~~~~i~ 540 (541)
|+..+.++|+
T Consensus 255 A~~~~~~Al~ 264 (296)
T PRK11189 255 AAALFKLALA 264 (296)
T ss_pred HHHHHHHHHH
Confidence 9999988764
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.2e-08 Score=84.79 Aligned_cols=406 Identities=13% Similarity=0.010 Sum_probs=229.2
Q ss_pred HHcCCChHHHHHHHhcCCCC---C-cchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccC
Q 048358 56 CNSGGDLAYASLLFKQVKEP---N-VFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLL 131 (541)
Q Consensus 56 ~~~~~~~~~A~~~~~~~~~~---~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~ 131 (541)
+....++..|..+++--... . ..+--.+..++.+-|++++|+..++.+.... .|+...+..|.-+.--.|
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~------~~~~el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD------DAPAELGVNLACCKFYLG 105 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC------CCCcccchhHHHHHHHHH
Confidence 44445666666666543320 1 1112224455667788888888888777655 555555555555555556
Q ss_pred CchHHHHHHHHHHHhCCCCchhhHH-HHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCC
Q 048358 132 CPSLGKQIHAHVCKFGLKSHSITEN-ALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMP 210 (541)
Q Consensus 132 ~~~~a~~~~~~~~~~g~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 210 (541)
.+.+|..+-... |+....+ .++....+.|+-++-..+-+.+.+. ..---+|....-..-.+++|++++.+..
T Consensus 106 ~Y~eA~~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 106 QYIEAKSIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred HHHHHHHHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666554332 2222333 3344445556655554444444321 1222233333333445677777777765
Q ss_pred CCCc--chHHH-HHHHHHhcCChHHHHHHHHHHHHCCCCCChHH-HHHHHHHHHc--cCC--------------------
Q 048358 211 YTTI--VSWTA-MISGYTHIGSYAEALDVFRQMQMVGIEPDEIS-IVSVLPACAQ--LGS-------------------- 264 (541)
Q Consensus 211 ~~~~--~~~~~-l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~ll~~~~~--~~~-------------------- 264 (541)
..+. ...|. +.-+|.+..-++-+.++++-.++. -||... .+..+....+ .|+
T Consensus 179 ~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~ 256 (557)
T KOG3785|consen 179 QDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFI 256 (557)
T ss_pred hcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhH
Confidence 4333 33343 334566666666666666665544 343322 2211111111 111
Q ss_pred -------------hHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCC-
Q 048358 265 -------------LELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGK- 330 (541)
Q Consensus 265 -------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~- 330 (541)
-+.|.+++--+.+. -+...-.|+-.|.+.++.++|..+.+++...++.-|-.-.-.++..|+
T Consensus 257 ~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe 332 (557)
T KOG3785|consen 257 EYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQE 332 (557)
T ss_pred HHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhh
Confidence 12222222222211 122334466678899999999999998866555544433333444333
Q ss_pred ------hHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHH
Q 048358 331 ------AHKAIHLFHEMQRLKVPPND-ITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLD 403 (541)
Q Consensus 331 ------~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 403 (541)
..-|...|+-.-+.+..-|. .--..+..++.-..++++++-++..+..- -...|... ..+..+++..|.+.
T Consensus 333 ~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn-~N~AQAk~atgny~ 410 (557)
T KOG3785|consen 333 TGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFN-LNLAQAKLATGNYV 410 (557)
T ss_pred cCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhh-hHHHHHHHHhcChH
Confidence 33444555544444433332 22345566666777899999999988763 33344443 45889999999999
Q ss_pred HHHHHHHhCC-CC-CCHHHHHHHH-HHHhhcCCHHHHHHHHHHHhccC-CCC-cchHHHHHHHHHhcCCHHHHHHHHHHh
Q 048358 404 QALNIIEEMP-MK-PDAKIWGSLL-SSCRTYSNLEIAVIAMEHLLVLE-PED-TGNYVLLSNIYAKHGRWEDVSRMRKLI 478 (541)
Q Consensus 404 ~A~~~~~~~~-~~-p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m 478 (541)
+|.++|-.+. -+ .|..+|..++ .+|.+.++.+.|..++-+ .+ |.+ ...+..+++-+.+.+.+=-|-+.|+.+
T Consensus 411 eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk---~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~l 487 (557)
T KOG3785|consen 411 EAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLK---TNTPSERFSLLQLIANDCYKANEFYYAAKAFDEL 487 (557)
T ss_pred HHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHh---cCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 9999998882 12 3556665554 568899999999877644 33 333 334556677888999988888889888
Q ss_pred hhCCCcc
Q 048358 479 RSKSMKK 485 (541)
Q Consensus 479 ~~~~~~~ 485 (541)
...++.|
T Consensus 488 E~lDP~p 494 (557)
T KOG3785|consen 488 EILDPTP 494 (557)
T ss_pred HccCCCc
Confidence 7665544
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.4e-07 Score=79.75 Aligned_cols=398 Identities=12% Similarity=0.086 Sum_probs=252.2
Q ss_pred HHHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhcc
Q 048358 54 DVCNSGGDLAYASLLFKQVKE---PNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGL 130 (541)
Q Consensus 54 ~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~ 130 (541)
-.+-+.|++++|+..+..+.+ ++...|-.+.-++.--|.+.+|..+-... +.++..-..++....+.
T Consensus 65 ~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka----------~k~pL~~RLlfhlahkl 134 (557)
T KOG3785|consen 65 HCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA----------PKTPLCIRLLFHLAHKL 134 (557)
T ss_pred HHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC----------CCChHHHHHHHHHHHHh
Confidence 345677999999999988765 56666766776667778899998877664 45556666677777788
Q ss_pred CCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCC--CChhhHHHHH-HHHHhcCCHHHHHHHHh
Q 048358 131 LCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTD--RDIVAWNNLI-SGYARLGQMKKARMLFD 207 (541)
Q Consensus 131 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~-~~~~~~~~~~~A~~~~~ 207 (541)
++-++-....+.+.+. ..-.-+|.......-.+.+|.+++.++.. |+-...|..+ -+|.+..-++-+.+++.
T Consensus 135 ndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~ 209 (557)
T KOG3785|consen 135 NDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLK 209 (557)
T ss_pred CcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHH
Confidence 8887777776666442 23334456665556678999999999876 4444555433 45666666666666554
Q ss_pred cCC---CCCcchHHHHHHHHHhc--CC---------------------------------hHHHHHHHHHHHHCCCCCCh
Q 048358 208 KMP---YTTIVSWTAMISGYTHI--GS---------------------------------YAEALDVFRQMQMVGIEPDE 249 (541)
Q Consensus 208 ~~~---~~~~~~~~~l~~~~~~~--g~---------------------------------~~~A~~~~~~m~~~~~~p~~ 249 (541)
--. ..++.+.|..+....+. |+ -+.|++++--+.+. -|.
T Consensus 210 vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE- 286 (557)
T KOG3785|consen 210 VYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE- 286 (557)
T ss_pred HHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChH-
Confidence 332 22334444444333332 21 12222222222211 121
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcC-------CHHHHHHHHHccCC-----CChhH
Q 048358 250 ISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCG-------CINQASQLFDQMVE-----RDVVS 317 (541)
Q Consensus 250 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~-----~~~~~ 317 (541)
.-..++--|.+.+++.+|..+.+.+. +.++.-|-.-.-.++..| .+.-|...|+-+-. ..+.-
T Consensus 287 -ARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpG 361 (557)
T KOG3785|consen 287 -ARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPG 361 (557)
T ss_pred -hhhhheeeecccccHHHHHHHHhhcC----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccc
Confidence 12234445778899999988876543 222332322222233333 35567777765522 23445
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHH-HHHHHHH
Q 048358 318 WSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHY-GCLVDLL 396 (541)
Q Consensus 318 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~ 396 (541)
-.++..++.-..++++++..+.....-= ..|...-..+.++++..|++.+|.++|-.+... .+ .+..+| ..|.+.|
T Consensus 362 RQsmAs~fFL~~qFddVl~YlnSi~sYF-~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~-~i-kn~~~Y~s~LArCy 438 (557)
T KOG3785|consen 362 RQSMASYFFLSFQFDDVLTYLNSIESYF-TNDDDFNLNLAQAKLATGNYVEAEELFIRISGP-EI-KNKILYKSMLARCY 438 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchhhhHHHHHHHHhcChHHHHHHHhhhcCh-hh-hhhHHHHHHHHHHH
Confidence 6677788888889999999888877653 333333346789999999999999999888642 23 344445 5577899
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHH-HHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 048358 397 GRAGRLDQALNIIEEMPMKPDAKIWGSLLS-SCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMR 475 (541)
Q Consensus 397 ~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 475 (541)
.++++++-|.+++-++....+..+...+|. -|.+.+.+--|-..|+.+..++|. |+-|. |+--.-..+|
T Consensus 439 i~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~-pEnWe---------GKRGACaG~f 508 (557)
T KOG3785|consen 439 IRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT-PENWE---------GKRGACAGLF 508 (557)
T ss_pred HhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC-ccccC---------CccchHHHHH
Confidence 999999999999999965556666666665 499999999999999988888876 44443 3333334556
Q ss_pred HHhhhCCCccCC
Q 048358 476 KLIRSKSMKKTP 487 (541)
Q Consensus 476 ~~m~~~~~~~~~ 487 (541)
..+.....+|.|
T Consensus 509 ~~l~~~~~~~~p 520 (557)
T KOG3785|consen 509 RQLANHKTDPIP 520 (557)
T ss_pred HHHHcCCCCCCc
Confidence 655544444433
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.6e-08 Score=84.10 Aligned_cols=194 Identities=15% Similarity=0.102 Sum_probs=151.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHccCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 048358 286 ICNALIEMYIKCGCINQASQLFDQMVERD---VVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAH 362 (541)
Q Consensus 286 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 362 (541)
+...|.-.|...|+...|..-+++..+.| ..+|..+...|.+.|+.+.|.+.|++..+.. +-+....|....-+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 45567778888888888888888886543 3467778888888888888888888888765 5556677777777888
Q ss_pred cCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHH
Q 048358 363 TGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIA 440 (541)
Q Consensus 363 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~ 440 (541)
.|.+++|.+.|+..........-..+|..+.-+..+.|+.+.|.+.|++. ...| ...+...+.......|++-.|...
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 88888888888888876555555677888888888888888888888876 5555 356777777888888888888888
Q ss_pred HHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048358 441 MEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 441 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 480 (541)
+++.....+.+.+.+...++.-...|+-+.|-++=..+..
T Consensus 196 ~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 196 LERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 8888887777788888888888888888888776655543
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.2e-08 Score=96.02 Aligned_cols=249 Identities=16% Similarity=0.142 Sum_probs=188.8
Q ss_pred HHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCC---ChhHHHHHHHHHHhcCChHHHH
Q 048358 259 CAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVER---DVVSWSTVIGGLANHGKAHKAI 335 (541)
Q Consensus 259 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~ 335 (541)
+.+.|++..|.-.|+..++.+ |-+...|..|.......++-..|+..+++..+- |..+...|.-.|...|.-..|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 356677777777777777765 446788999999999999888899888888553 5667777888899889889999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHH-----------HHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHH
Q 048358 336 HLFHEMQRLKVPPNDITFIGLL-----------SACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQ 404 (541)
Q Consensus 336 ~~~~~m~~~~~~p~~~~~~~l~-----------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 404 (541)
+.|+.=+... +| |..+. ..+..........++|-++....+..+|+.++..|.-.|.-.|++++
T Consensus 374 ~~L~~Wi~~~-p~----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 374 KMLDKWIRNK-PK----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHhC-cc----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 8888765432 11 00010 12223344556667777776666656888889999999999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 048358 405 ALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKS 482 (541)
Q Consensus 405 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 482 (541)
|.+.|+.. .++| |..+|+.|...++...+.++|+..|.+++++.|.-..+.+.|+..|...|.+++|...|=......
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 99999988 7788 668999999999999999999999999999999999999999999999999999998877665432
Q ss_pred CccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhccc
Q 048358 483 MKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAK 529 (541)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 529 (541)
-....+ . ..-++ +..++..|...+..+++.+
T Consensus 529 ~ks~~~-----~----------~~~~~-se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 529 RKSRNH-----N----------KAPMA-SENIWQTLRLALSAMNRSD 559 (579)
T ss_pred hccccc-----c----------cCCcc-hHHHHHHHHHHHHHcCCch
Confidence 110000 0 00111 5678888888888888776
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.2e-07 Score=88.68 Aligned_cols=399 Identities=13% Similarity=0.051 Sum_probs=240.6
Q ss_pred HHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCc-hhhHHHHHHHHH
Q 048358 85 RAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSH-SITENALLDLYG 163 (541)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~ 163 (541)
.+.+..|+++.|+..|.+.+... ++|...|..-..+++..|+++.|.+=-.+.++ +.|+ ..-|+....++.
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~------p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~ 81 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS------PTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALF 81 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC------CCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHH
Confidence 45677899999999999999887 77888899999999999999998876666555 4455 457888888889
Q ss_pred cCCChHHHHHHHhhcCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHhcCCCC--------Cc--------chHHHHHHHH
Q 048358 164 KCDELIEAHKVFEEMTD--R-DIVAWNNLISGYARLGQMKKARMLFDKMPYT--------TI--------VSWTAMISGY 224 (541)
Q Consensus 164 ~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~--------~~~~~l~~~~ 224 (541)
-.|++++|...|.+-.+ | |...++.+..++ ..+.+. -+....| ++ ..|..++..+
T Consensus 82 ~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~----~~~~~~--~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~ 155 (539)
T KOG0548|consen 82 GLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY----LEDYAA--DQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEII 155 (539)
T ss_pred hcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh----hHHHHh--hhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHh
Confidence 99999999999998766 3 444566666555 111111 1111111 11 1222222221
Q ss_pred HhcC-------ChHHHHHHHHHHHHCCCCCChHHHHHH-HHHHHccCChH----HHHHHHHHHHH-hCCCccHhHHHHHH
Q 048358 225 THIG-------SYAEALDVFRQMQMVGIEPDEISIVSV-LPACAQLGSLE----LGEWIHMYCDK-NHLLRRTVICNALI 291 (541)
Q Consensus 225 ~~~g-------~~~~A~~~~~~m~~~~~~p~~~~~~~l-l~~~~~~~~~~----~a~~~~~~~~~-~~~~~~~~~~~~l~ 291 (541)
-+.- +.+......-.+...+. . .+..- .........+. ..........+ .....-..-...+.
T Consensus 156 ~~~p~~l~~~l~d~r~m~a~~~l~~~~~--~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lg 231 (539)
T KOG0548|consen 156 QKNPTSLKLYLNDPRLMKADGQLKGVDE--L--LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELG 231 (539)
T ss_pred hcCcHhhhcccccHHHHHHHHHHhcCcc--c--cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHH
Confidence 1110 00111111100000000 0 00000 00000000000 00000000000 00000112345577
Q ss_pred HHHHhcCCHHHHHHHHHccCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH-------HHHHHhc
Q 048358 292 EMYIKCGCINQASQLFDQMVE--RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIG-------LLSACAH 362 (541)
Q Consensus 292 ~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-------l~~~~~~ 362 (541)
++..+..++..|.+-+..... .++.-++....+|...|.+.++...-....+.| .-...-|+. +..+|.+
T Consensus 232 naaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~g-re~rad~klIak~~~r~g~a~~k 310 (539)
T KOG0548|consen 232 NAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVG-RELRADYKLIAKALARLGNAYTK 310 (539)
T ss_pred HHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHh-HHHHHHHHHHHHHHHHhhhhhhh
Confidence 777788888888888877644 344456677778888888888887777776665 222233333 3345666
Q ss_pred cCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHhhcCCHHHHHHH
Q 048358 363 TGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPDA-KIWGSLLSSCRTYSNLEIAVIA 440 (541)
Q Consensus 363 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~ 440 (541)
.++++.++..|.+....+ ..|+ ...+....+++++..+.. -+.|.. .-...-...+.+.|++..|+..
T Consensus 311 ~~~~~~ai~~~~kaLte~-Rt~~---------~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~ 380 (539)
T KOG0548|consen 311 REDYEGAIKYYQKALTEH-RTPD---------LLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKH 380 (539)
T ss_pred HHhHHHHHHHHHHHhhhh-cCHH---------HHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHH
Confidence 788999999998877643 2222 233445566666666555 344543 2223335568899999999999
Q ss_pred HHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHH
Q 048358 441 MEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLEL 520 (541)
Q Consensus 441 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~ 520 (541)
|.++++.+|+|+..|...+-+|.+.|.+..|+.-.+...+ ++|+...+|.-=+.
T Consensus 381 YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie--------------------------L~p~~~kgy~RKg~ 434 (539)
T KOG0548|consen 381 YTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIE--------------------------LDPNFIKAYLRKGA 434 (539)
T ss_pred HHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh--------------------------cCchHHHHHHHHHH
Confidence 9999999999999999999999999999999988777655 35666666666666
Q ss_pred HHHHHhcccCCccccccc
Q 048358 521 LALHQDRAKDVIDIMYED 538 (541)
Q Consensus 521 ~~~~~~~~~~a~~~~~~~ 538 (541)
++..+++++.|.+.+.+.
T Consensus 435 al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 435 ALRAMKEYDKALEAYQEA 452 (539)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666666555443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.6e-07 Score=84.65 Aligned_cols=341 Identities=13% Similarity=0.083 Sum_probs=174.5
Q ss_pred HHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCCCChh--hHHHHHHHHHhcCCHHHHH
Q 048358 126 SCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIV--AWNNLISGYARLGQMKKAR 203 (541)
Q Consensus 126 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~ 203 (541)
.+...+++++|.+....++..+ +-+...+..-+-+..+.+++++|+++.+.-...... -+-.-..+..+.+..++|.
T Consensus 21 ~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Deal 99 (652)
T KOG2376|consen 21 RHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEAL 99 (652)
T ss_pred HhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHH
Confidence 3344555666666666655554 333444444444555666666666554443221111 1112233444566677777
Q ss_pred HHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH--HHHHHHHHHHccCChHHHHHHHHHHHHhCCC
Q 048358 204 MLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEI--SIVSVLPACAQLGSLELGEWIHMYCDKNHLL 281 (541)
Q Consensus 204 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 281 (541)
..++...+.+..+...-...+.+.|++++|+++|+.+.+.+. ++.. .-..++.+-.. -.+. .+......
T Consensus 100 k~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~-dd~d~~~r~nl~a~~a~----l~~~----~~q~v~~v 170 (652)
T KOG2376|consen 100 KTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS-DDQDEERRANLLAVAAA----LQVQ----LLQSVPEV 170 (652)
T ss_pred HHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHh----hhHH----HHHhccCC
Confidence 777655444444555555666777777777777777766542 2211 11111111100 0000 11111111
Q ss_pred c--cHhHHHHHHHHHHhcCCHHHHHHHHHcc--------CCCCh-----h-----HHHHHHHHHHhcCChHHHHHHHHHH
Q 048358 282 R--RTVICNALIEMYIKCGCINQASQLFDQM--------VERDV-----V-----SWSTVIGGLANHGKAHKAIHLFHEM 341 (541)
Q Consensus 282 ~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~-----~-----~~~~l~~~~~~~~~~~~a~~~~~~m 341 (541)
| +-..+......+...|++.+|++++... .+.|. . .-..|.-.+...|+.++|..+|...
T Consensus 171 ~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~ 250 (652)
T KOG2376|consen 171 PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDI 250 (652)
T ss_pred CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 2 1122222344566778888888887766 11111 1 1223445667789999999999999
Q ss_pred HhCCCCCCHHHH----HHHHHHHhccCcHHH--HHHHHHHhhhhc--------CCCCcHhHHHHHHHHHHhcCCHHHHHH
Q 048358 342 QRLKVPPNDITF----IGLLSACAHTGFWNE--GLMYFDSMKRDH--------HIEHKIEHYGCLVDLLGRAGRLDQALN 407 (541)
Q Consensus 342 ~~~~~~p~~~~~----~~l~~~~~~~g~~~~--a~~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~ 407 (541)
+... ++|.... |.|+. ...-.++-. ++..++.....+ .-..-...+........-.+..+.+.+
T Consensus 251 i~~~-~~D~~~~Av~~NNLva-~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~ 328 (652)
T KOG2376|consen 251 IKRN-PADEPSLAVAVNNLVA-LSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRE 328 (652)
T ss_pred HHhc-CCCchHHHHHhcchhh-hccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 8886 5554322 22222 222111111 222222221110 000011112111112222455567777
Q ss_pred HHHhCC-CCCCHHHHHHHHH-HH-hhcCCHHHHHHHHHHHhccCCCC-cchHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048358 408 IIEEMP-MKPDAKIWGSLLS-SC-RTYSNLEIAVIAMEHLLVLEPED-TGNYVLLSNIYAKHGRWEDVSRMRKLIR 479 (541)
Q Consensus 408 ~~~~~~-~~p~~~~~~~l~~-~~-~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 479 (541)
+....+ ..|.. .+..++. +. .+.....++.+++....+..|.+ ..+...++.....+|+++.|.+++....
T Consensus 329 ~~a~lp~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~ 403 (652)
T KOG2376|consen 329 LSASLPGMSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFL 403 (652)
T ss_pred HHHhCCccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 777773 33444 3344443 32 33336888899998888888886 5577778888999999999999999554
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.7e-06 Score=88.64 Aligned_cols=363 Identities=12% Similarity=0.000 Sum_probs=228.3
Q ss_pred HHHHHHHcCCChHHHHHHHhhcCCCChh--hHHHHHHHHHhcCCHHHHHHHHhcCCC----CCcchHHHHHHHHHhcCCh
Q 048358 157 ALLDLYGKCDELIEAHKVFEEMTDRDIV--AWNNLISGYARLGQMKKARMLFDKMPY----TTIVSWTAMISGYTHIGSY 230 (541)
Q Consensus 157 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~ 230 (541)
.....+...|++.+|............. ............|+++.+...++.++. .++.........+...|++
T Consensus 346 raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~ 425 (903)
T PRK04841 346 AAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRY 425 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCH
Confidence 3344456667777666665555443211 111222345557888888888877742 2333344455666788999
Q ss_pred HHHHHHHHHHHHCC--C----CCChH--HHHHHHHHHHccCChHHHHHHHHHHHHhCCCcc----HhHHHHHHHHHHhcC
Q 048358 231 AEALDVFRQMQMVG--I----EPDEI--SIVSVLPACAQLGSLELGEWIHMYCDKNHLLRR----TVICNALIEMYIKCG 298 (541)
Q Consensus 231 ~~A~~~~~~m~~~~--~----~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g 298 (541)
+++...+......- . .+... ....+...+...|+++.|...++.........+ ....+.+...+...|
T Consensus 426 ~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G 505 (903)
T PRK04841 426 SEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKG 505 (903)
T ss_pred HHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcC
Confidence 99999988775431 0 11111 112223345678999999999988776322222 124566677788899
Q ss_pred CHHHHHHHHHccCC-------CC--hhHHHHHHHHHHhcCChHHHHHHHHHHHh----CCCC--C-CHHHHHHHHHHHhc
Q 048358 299 CINQASQLFDQMVE-------RD--VVSWSTVIGGLANHGKAHKAIHLFHEMQR----LKVP--P-NDITFIGLLSACAH 362 (541)
Q Consensus 299 ~~~~A~~~~~~~~~-------~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~----~~~~--p-~~~~~~~l~~~~~~ 362 (541)
++++|...+.+... +. ..++..+...+...|++++|...+++... .+.. + ....+..+...+..
T Consensus 506 ~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 585 (903)
T PRK04841 506 ELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWE 585 (903)
T ss_pred CHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 99999998887732 11 23455567778889999999998887654 2211 1 22334455566777
Q ss_pred cCcHHHHHHHHHHhhhhc---CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHH-----HHHHHHhh
Q 048358 363 TGFWNEGLMYFDSMKRDH---HIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM----PMKPDAKIWG-----SLLSSCRT 430 (541)
Q Consensus 363 ~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~-----~l~~~~~~ 430 (541)
.|++++|...+....... +.......+..+...+...|++++|.+.++.. ........+. ..+..+..
T Consensus 586 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (903)
T PRK04841 586 WARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQM 665 (903)
T ss_pred hcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHH
Confidence 899999999988875421 11112344555677888999999999888776 1111111111 11233456
Q ss_pred cCCHHHHHHHHHHHhccCCCCcch----HHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCC
Q 048358 431 YSNLEIAVIAMEHLLVLEPEDTGN----YVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDD 506 (541)
Q Consensus 431 ~~~~~~a~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (541)
.|+.+.|...+.......+..... +..++.++...|++++|...+++.....-. ..
T Consensus 666 ~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~--------------------~g 725 (903)
T PRK04841 666 TGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARS--------------------LR 725 (903)
T ss_pred CCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--------------------hC
Confidence 889999999987766533222211 457888899999999999999988664210 01
Q ss_pred CCCChhHHHHHHHHHHHHHhcccCCcccccccC
Q 048358 507 TKPFLKDIFWLLELLALHQDRAKDVIDIMYEDI 539 (541)
Q Consensus 507 ~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~i 539 (541)
..++...++..++..+..+|+.++|.+.+.+++
T Consensus 726 ~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al 758 (903)
T PRK04841 726 LMSDLNRNLILLNQLYWQQGRKSEAQRVLLEAL 758 (903)
T ss_pred chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 123456678899999999999999988877664
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.5e-08 Score=91.99 Aligned_cols=226 Identities=13% Similarity=0.127 Sum_probs=133.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC-ccHhHHHHHHHHH
Q 048358 216 SWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLL-RRTVICNALIEMY 294 (541)
Q Consensus 216 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~ 294 (541)
....+.+++...|+++.++. +..... .|.......+...+....+-+.+..-+......... .+..+.......+
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~ 112 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL 112 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 33445566666776655432 222222 555555544444444333444443333333222222 2333333334556
Q ss_pred HhcCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCcHHHHH
Q 048358 295 IKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAH----TGFWNEGL 370 (541)
Q Consensus 295 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~ 370 (541)
...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.+ +..+...+..++.. .+.+.+|.
T Consensus 113 ~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~ 187 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQID---EDSILTQLAEAWVNLATGGEKYQDAF 187 (290)
T ss_dssp CCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred HHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhCchhHHHHH
Confidence 6678888888777765 456666677788888888888888888887753 33444445544332 34678888
Q ss_pred HHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCH-HHHHHHHHHHhcc
Q 048358 371 MYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNL-EIAVIAMEHLLVL 447 (541)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~ 447 (541)
-+|+++... .++++.+.+.+..+....|++++|.+++.+. ...| +..++..++......|+. +.+.+.+.++...
T Consensus 188 y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 188 YIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 888887653 4567777788888888888888888877765 4444 456666677766666766 6677788887777
Q ss_pred CCCCc
Q 048358 448 EPEDT 452 (541)
Q Consensus 448 ~~~~~ 452 (541)
.|.++
T Consensus 266 ~p~h~ 270 (290)
T PF04733_consen 266 NPNHP 270 (290)
T ss_dssp TTTSH
T ss_pred CCCCh
Confidence 77754
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.2e-07 Score=89.71 Aligned_cols=281 Identities=14% Similarity=0.100 Sum_probs=146.8
Q ss_pred HhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHH------ccCC
Q 048358 194 ARLGQMKKARMLFDKMPY---TTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACA------QLGS 264 (541)
Q Consensus 194 ~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~------~~~~ 264 (541)
...|++++|++.++.-.. ............+.+.|+.++|..+|+.+++. .|+...|...+..+. ...+
T Consensus 15 ~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~~~~~ 92 (517)
T PF12569_consen 15 EEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQLSDED 92 (517)
T ss_pred HHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhccccccc
Confidence 344444444444443221 11233444556666666666666666666655 344444444443333 1123
Q ss_pred hHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHH-HHHHHHHccCCCC-hhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048358 265 LELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCIN-QASQLFDQMVERD-VVSWSTVIGGLANHGKAHKAIHLFHEMQ 342 (541)
Q Consensus 265 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 342 (541)
.+....+++.+...-.. ......+.-.+.....+. .+...+..+.... +.+|+.+-..|....+..-...++....
T Consensus 93 ~~~~~~~y~~l~~~yp~--s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~ 170 (517)
T PF12569_consen 93 VEKLLELYDELAEKYPR--SDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYV 170 (517)
T ss_pred HHHHHHHHHHHHHhCcc--ccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHH
Confidence 45555555555443311 111111111111111111 1222223333322 2344555444544433333334444432
Q ss_pred hC----C----------CCCCH--HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 048358 343 RL----K----------VPPND--ITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQAL 406 (541)
Q Consensus 343 ~~----~----------~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 406 (541)
.. + -+|+. .++..+...|...|++++|+++.++..... |-.+..|..-.+.|-+.|++.+|.
T Consensus 171 ~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh~G~~~~Aa 248 (517)
T PF12569_consen 171 NSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKHAGDLKEAA 248 (517)
T ss_pred HhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 21 1 12333 244556677778888888888888887632 333677777888888888888888
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC-cc------hH--HHHHHHHHhcCCHHHHHHHH
Q 048358 407 NIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPED-TG------NY--VLLSNIYAKHGRWEDVSRMR 475 (541)
Q Consensus 407 ~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~------~~--~~l~~~~~~~g~~~~A~~~~ 475 (541)
+.++.. ...+ |...=+..+..+.+.|++++|...+......+.+. .. .| .--+.+|.+.|++..|+..+
T Consensus 249 ~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~ 328 (517)
T PF12569_consen 249 EAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRF 328 (517)
T ss_pred HHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 888877 4444 34444445555778888888888887776544211 11 22 34567788888888888766
Q ss_pred HHhhh
Q 048358 476 KLIRS 480 (541)
Q Consensus 476 ~~m~~ 480 (541)
..+.+
T Consensus 329 ~~v~k 333 (517)
T PF12569_consen 329 HAVLK 333 (517)
T ss_pred HHHHH
Confidence 55543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.1e-09 Score=94.58 Aligned_cols=245 Identities=13% Similarity=0.079 Sum_probs=167.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHH
Q 048358 222 SGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCIN 301 (541)
Q Consensus 222 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 301 (541)
+-+.-.|++..++.-.+ .....-..+......+.+++...|+.+.+. ..+.+.. .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 44566788888886665 222211223344556778888888876543 3333333 566666666665555545666
Q ss_pred HHHHHHHccC-CC----ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 048358 302 QASQLFDQMV-ER----DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSM 376 (541)
Q Consensus 302 ~A~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 376 (541)
.+..-+.+.. ++ +..........+...|++++|++++... .+.......+..+.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7776666543 32 2222222334566679999999887642 45677778889999999999999999999
Q ss_pred hhhcCCCCcHhHHHHHHHHHH----hcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC
Q 048358 377 KRDHHIEHKIEHYGCLVDLLG----RAGRLDQALNIIEEM--PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPE 450 (541)
Q Consensus 377 ~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 450 (541)
.+. ..|. +...+..++. ..+.+.+|..+|+++ ...+++.+.+.+..++...|++++|..+++++++.+|.
T Consensus 158 ~~~---~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 158 QQI---DEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HCC---SCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred Hhc---CCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 863 3333 2334444443 344799999999999 44578899999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHhcCCH-HHHHHHHHHhhhC
Q 048358 451 DTGNYVLLSNIYAKHGRW-EDVSRMRKLIRSK 481 (541)
Q Consensus 451 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~ 481 (541)
++.++..++.+....|+. +.+.+++.++...
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 999999999999999988 7788899888764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.5e-07 Score=87.08 Aligned_cols=35 Identities=14% Similarity=0.182 Sum_probs=25.5
Q ss_pred CCCCChhHHHHHHHHHHHHHhcccCCcccccccCC
Q 048358 506 DTKPFLKDIFWLLELLALHQDRAKDVIDIMYEDIG 540 (541)
Q Consensus 506 ~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~i~ 540 (541)
...-..++.+..++-..+.-|+.++|..-+-++|+
T Consensus 989 ~~k~k~~~vhlk~a~~ledegk~edaskhyveaik 1023 (1636)
T KOG3616|consen 989 AAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIK 1023 (1636)
T ss_pred hhhccCccchhHHhhhhhhccchhhhhHhhHHHhh
Confidence 34556677788888888888888888666555553
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.2e-06 Score=77.30 Aligned_cols=291 Identities=15% Similarity=0.120 Sum_probs=165.1
Q ss_pred HHHHHHcCCChHHHHHHHhhcCCCChhhHHHHH---HHHHhcCCHHHHHHHHhcCCCCCcchHHH---HHHHHHhcCChH
Q 048358 158 LLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLI---SGYARLGQMKKARMLFDKMPYTTIVSWTA---MISGYTHIGSYA 231 (541)
Q Consensus 158 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~ 231 (541)
+...+...|++..|+.-|....+-|...|.++. ..|...|+...|+.-+++..+..+..+.+ -...+.++|.++
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele 123 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELE 123 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHH
Confidence 334444555555555555555554444444333 23444455444444444443222222222 123455666666
Q ss_pred HHHHHHHHHHHCCCCCChH----------------HHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHH
Q 048358 232 EALDVFRQMQMVGIEPDEI----------------SIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYI 295 (541)
Q Consensus 232 ~A~~~~~~m~~~~~~p~~~----------------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 295 (541)
+|..-|+..+++. |+.. .....+..+...|+...++.....+.+.. +.+...|..-..+|.
T Consensus 124 ~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i 200 (504)
T KOG0624|consen 124 QAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYI 200 (504)
T ss_pred HHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHH
Confidence 6666666665542 2111 11223344555666666666666666543 455666666677777
Q ss_pred hcCCHHHHHHHHHcc---CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH-------------HHH
Q 048358 296 KCGCINQASQLFDQM---VERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGL-------------LSA 359 (541)
Q Consensus 296 ~~g~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-------------~~~ 359 (541)
..|++..|+.=++.. ...|..++.-+-..+-..|+.+.++...++..+. .||....... +..
T Consensus 201 ~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~ 278 (504)
T KOG0624|consen 201 AEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQ 278 (504)
T ss_pred hcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 777777776655544 3345555555556666667777777666666654 3554321111 112
Q ss_pred HhccCcHHHHHHHHHHhhhhcCCCCc-----HhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcC
Q 048358 360 CAHTGFWNEGLMYFDSMKRDHHIEHK-----IEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPD-AKIWGSLLSSCRTYS 432 (541)
Q Consensus 360 ~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~ 432 (541)
....++|.++++..+...+. .|. ...+..+-.++...|++.+|++...+. .+.|+ +.++..-..+|.-..
T Consensus 279 ~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE 355 (504)
T KOG0624|consen 279 AIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDE 355 (504)
T ss_pred HHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhH
Confidence 23456777777777777653 233 122344555666778888888887776 66665 677777777888888
Q ss_pred CHHHHHHHHHHHhccCCCCcchHH
Q 048358 433 NLEIAVIAMEHLLVLEPEDTGNYV 456 (541)
Q Consensus 433 ~~~~a~~~~~~~~~~~~~~~~~~~ 456 (541)
.++.|+.-|+++.+.++++..+-.
T Consensus 356 ~YD~AI~dye~A~e~n~sn~~~re 379 (504)
T KOG0624|consen 356 MYDDAIHDYEKALELNESNTRARE 379 (504)
T ss_pred HHHHHHHHHHHHHhcCcccHHHHH
Confidence 888888888888888877654433
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.1e-07 Score=78.71 Aligned_cols=291 Identities=14% Similarity=0.098 Sum_probs=221.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHH---HHHHhcCChHHHHHHHHHHHHCCCCCChHHHHH-HHHHHHcc
Q 048358 187 NNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMI---SGYTHIGSYAEALDVFRQMQMVGIEPDEISIVS-VLPACAQL 262 (541)
Q Consensus 187 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~ 262 (541)
.-+...+...|++..|+.-|....+-|+..|.++- ..|...|+...|+.-+.+.++. +||...-.. -...+.+.
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~ 119 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQ 119 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhc
Confidence 34566777789999999999999888887777664 5788999999999999988865 888654322 23346789
Q ss_pred CChHHHHHHHHHHHHhCCCcc--HhHH------------HHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHH
Q 048358 263 GSLELGEWIHMYCDKNHLLRR--TVIC------------NALIEMYIKCGCINQASQLFDQMVE---RDVVSWSTVIGGL 325 (541)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~--~~~~------------~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 325 (541)
|.++.|..-|+.+++.....+ ...+ ...+..+...|+...|+.....+.+ .|...|..-..+|
T Consensus 120 Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~ 199 (504)
T KOG0624|consen 120 GELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCY 199 (504)
T ss_pred ccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHH
Confidence 999999999999998754211 1111 2234456678999999999888855 3777888889999
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHh-H---HHHH---------
Q 048358 326 ANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIE-H---YGCL--------- 392 (541)
Q Consensus 326 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~---~~~l--------- 392 (541)
...|++..|+.=++...+.. ..|..++..+-..+...|+.+.++...++..+- .|+.. + |..+
T Consensus 200 i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl---dpdHK~Cf~~YKklkKv~K~les 275 (504)
T KOG0624|consen 200 IAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL---DPDHKLCFPFYKKLKKVVKSLES 275 (504)
T ss_pred HhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc---CcchhhHHHHHHHHHHHHHHHHH
Confidence 99999999998888877654 556667777777888899999999998888863 45532 1 2211
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 048358 393 VDLLGRAGRLDQALNIIEEM-PMKPD-----AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHG 466 (541)
Q Consensus 393 ~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 466 (541)
+....+.+++-++++-.+.. ...|. ...+..+-.++...+++.+|++...++++.+|+|..++..-+.+|.-..
T Consensus 276 ~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE 355 (504)
T KOG0624|consen 276 AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDE 355 (504)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhH
Confidence 12234567777777777665 44554 2334555566788999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhhhCCC
Q 048358 467 RWEDVSRMRKLIRSKSM 483 (541)
Q Consensus 467 ~~~~A~~~~~~m~~~~~ 483 (541)
.+++|+.-|+...+.+.
T Consensus 356 ~YD~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 356 MYDDAIHDYEKALELNE 372 (504)
T ss_pred HHHHHHHHHHHHHhcCc
Confidence 99999999999877643
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.3e-05 Score=80.58 Aligned_cols=358 Identities=11% Similarity=0.163 Sum_probs=174.7
Q ss_pred CCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhh
Q 048358 75 PNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSIT 154 (541)
Q Consensus 75 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 154 (541)
.|+..-+..+.++...+-+.+-++++++..-.+- ...-+...-+.|+-...+ -+.....+..+.+-..+ .|
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S---~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyD-a~---- 1052 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNS---VFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYD-AP---- 1052 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCc---ccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCC-ch----
Confidence 4555556667777777777788888777764321 001111222333322222 23334444444443322 11
Q ss_pred HHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHH
Q 048358 155 ENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEAL 234 (541)
Q Consensus 155 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 234 (541)
.+.......+-+++|..+|++.. -+..+.+.|+. .-+.++.|.+.-++..+| ..|..+..+-.+.|...+|+
T Consensus 1053 --~ia~iai~~~LyEEAF~ifkkf~-~n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAi 1124 (1666)
T KOG0985|consen 1053 --DIAEIAIENQLYEEAFAIFKKFD-MNVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAI 1124 (1666)
T ss_pred --hHHHHHhhhhHHHHHHHHHHHhc-ccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHH
Confidence 23344455556666666666642 12223333332 234555666655555443 34666666666666666666
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCCC
Q 048358 235 DVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERD 314 (541)
Q Consensus 235 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 314 (541)
+-|-+. -|...|..++..+.+.|.+++..+++..+.+..-+|... +.|+-+|++.+++.+.++++. .||
T Consensus 1125 eSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~---gpN 1193 (1666)
T KOG0985|consen 1125 ESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA---GPN 1193 (1666)
T ss_pred HHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc---CCC
Confidence 655442 244556666666666666666666666666555444332 456666666666666555432 233
Q ss_pred hhH--------------------------HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHH
Q 048358 315 VVS--------------------------WSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNE 368 (541)
Q Consensus 315 ~~~--------------------------~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 368 (541)
... |..|...+...|++..|.+.-++. .+..||..+-.+|...+.+..
T Consensus 1194 ~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrl 1267 (1666)
T KOG0985|consen 1194 VANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRL 1267 (1666)
T ss_pred chhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhH
Confidence 333 444444444455555444433321 233455555555554444332
Q ss_pred HHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 048358 369 GLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLV 446 (541)
Q Consensus 369 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 446 (541)
|. +-. ..+.....-...++..|...|-+++.+.+++.. |... ....|.-|.-.|.+- ++++..+.++-...
T Consensus 1268 AQ-----iCG-L~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~LFws 1340 (1666)
T KOG0985|consen 1268 AQ-----ICG-LNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLKLFWS 1340 (1666)
T ss_pred HH-----hcC-ceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHH
Confidence 21 110 112223333455666666666666666666654 4332 223333333333332 33444443333322
Q ss_pred -cCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048358 447 -LEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIR 479 (541)
Q Consensus 447 -~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 479 (541)
++ .-.++++..++--|.+..-++.+-.
T Consensus 1341 RvN------ipKviRA~eqahlW~ElvfLY~~y~ 1368 (1666)
T KOG0985|consen 1341 RVN------IPKVIRAAEQAHLWSELVFLYDKYE 1368 (1666)
T ss_pred hcc------hHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 11 1134555555556666665555443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=7.5e-06 Score=80.53 Aligned_cols=180 Identities=16% Similarity=0.098 Sum_probs=106.3
Q ss_pred CchhHHHHHHHHHHcCCChHHHHHHHhcCCC-------------CCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCC
Q 048358 44 QSNFLVTKMIDVCNSGGDLAYASLLFKQVKE-------------PNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTG 110 (541)
Q Consensus 44 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------------~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~ 110 (541)
.+..+|..+.++|.+..+++-|.-.+..|.. ++ .+-..+...-..-|..++|..+|.+-.+.+
T Consensus 755 kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D--- 830 (1416)
T KOG3617|consen 755 KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRYD--- 830 (1416)
T ss_pred hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---
Confidence 3556788888888888887777777766653 21 111122222345677778888777766533
Q ss_pred CCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCC----------
Q 048358 111 SLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTD---------- 180 (541)
Q Consensus 111 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------- 180 (541)
.+-+.|...|.+++|.++-+.--+..+ ..||.....-+-..+|.+.|++.|++...
T Consensus 831 -----------LlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~ 896 (1416)
T KOG3617|consen 831 -----------LLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLK 896 (1416)
T ss_pred -----------HHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHH
Confidence 344556667788877776543322211 24555556666667778888887776542
Q ss_pred -------------CChhhHHHHHHHHHhcCCHHHHHHHHhcCC------------------------CCCcchHHHHHHH
Q 048358 181 -------------RDIVAWNNLISGYARLGQMKKARMLFDKMP------------------------YTTIVSWTAMISG 223 (541)
Q Consensus 181 -------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------------------------~~~~~~~~~l~~~ 223 (541)
+|...|.=...-+-..|+.+.|+.+|.... ..|..+...+.+.
T Consensus 897 e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~ 976 (1416)
T KOG3617|consen 897 EYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARM 976 (1416)
T ss_pred hChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHH
Confidence 122223223333344677777777766543 1133455566677
Q ss_pred HHhcCChHHHHHHHHHHH
Q 048358 224 YTHIGSYAEALDVFRQMQ 241 (541)
Q Consensus 224 ~~~~g~~~~A~~~~~~m~ 241 (541)
|-..|++.+|..+|.+.+
T Consensus 977 YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 977 YENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hhhhHHHHHHHHHHHHHH
Confidence 777777777777776654
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.7e-06 Score=86.68 Aligned_cols=420 Identities=12% Similarity=0.044 Sum_probs=258.6
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCC--cccH
Q 048358 46 NFLVTKMIDVCNSGGDLAYASLLFKQVKE---PNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPD--KFTL 120 (541)
Q Consensus 46 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~--~~~~ 120 (541)
...|..|-..|....+...|.+.|++..+ .+..++....+.|+...+++.|..+.-..-+.. +.- ...|
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka------~a~~~k~nW 565 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKA------PAFACKENW 565 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc------hHHHHHhhh
Confidence 34677777778777788888888888776 455677788888999999998888844433322 111 1223
Q ss_pred HHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCCCChh-hHHH--HHHHHHhcC
Q 048358 121 PFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIV-AWNN--LISGYARLG 197 (541)
Q Consensus 121 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~--l~~~~~~~~ 197 (541)
....-.+...++...+..-|+...+.. +.|...|..+..+|.++|++..|.++|.+...-+.. .|.. ....-+..|
T Consensus 566 ~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~G 644 (1238)
T KOG1127|consen 566 VQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNG 644 (1238)
T ss_pred hhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhh
Confidence 333445567778888888888888765 347788888999999999999999999777653222 2222 223344567
Q ss_pred CHHHHHHHHhcCCC---------CC-cchHHHHHHHHHhcCChHHHHHHHHH-------HHHCCC---------------
Q 048358 198 QMKKARMLFDKMPY---------TT-IVSWTAMISGYTHIGSYAEALDVFRQ-------MQMVGI--------------- 245 (541)
Q Consensus 198 ~~~~A~~~~~~~~~---------~~-~~~~~~l~~~~~~~g~~~~A~~~~~~-------m~~~~~--------------- 245 (541)
.+.+|...+..... .+ ..++-.+...+...|-..+|..++++ ...+..
T Consensus 645 kYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~ 724 (1238)
T KOG1127|consen 645 KYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACY 724 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHH
Confidence 77777777765531 11 11222222222223322223322222 222211
Q ss_pred -----CCC---hHHHHHHHHHHHccCCh---H---HHHHHHHHHHHhCCCccHhHHHHHHHHHHh----c----CCHHHH
Q 048358 246 -----EPD---EISIVSVLPACAQLGSL---E---LGEWIHMYCDKNHLLRRTVICNALIEMYIK----C----GCINQA 303 (541)
Q Consensus 246 -----~p~---~~~~~~ll~~~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~----g~~~~A 303 (541)
.|+ .....++..-....+.. + .+.+.+-.- .....+...|..|+..|.+ . .+...|
T Consensus 725 ~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~h--lsl~~~~~~WyNLGinylr~f~~l~et~~~~~~A 802 (1238)
T KOG1127|consen 725 IFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAH--LSLAIHMYPWYNLGINYLRYFLLLGETMKDACTA 802 (1238)
T ss_pred HHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHH--HHHhhccchHHHHhHHHHHHHHHcCCcchhHHHH
Confidence 122 11111111112222221 1 011111100 1111234455555554443 1 233467
Q ss_pred HHHHHccCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhc
Q 048358 304 SQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDH 380 (541)
Q Consensus 304 ~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 380 (541)
...+...++ .+..+|+.|.-. ...|.+.-+...|-+-.... +.+..+|..+.-.+....+++.|...|...+.-
T Consensus 803 i~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSL- 879 (1238)
T KOG1127|consen 803 IRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSL- 879 (1238)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhc-
Confidence 777776644 466677776555 66688888888888777664 667778888888899999999999999999863
Q ss_pred CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHhhcCCHHHHHH----------HHHH
Q 048358 381 HIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-------PMKPDAKIWGSLLSSCRTYSNLEIAVI----------AMEH 443 (541)
Q Consensus 381 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~~----------~~~~ 443 (541)
.|.+...|..........|+.-++..+|..- +.-|+...|.+........|+.++-+. .+++
T Consensus 880 -dP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~ 958 (1238)
T KOG1127|consen 880 -DPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSY 958 (1238)
T ss_pred -CchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHH
Confidence 3566777776666667888888888888762 334566555555555566766665554 3445
Q ss_pred HhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHh
Q 048358 444 LLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLI 478 (541)
Q Consensus 444 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 478 (541)
.....|+...+|...+....+.+.+.+|.++..+.
T Consensus 959 yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 959 YFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred HHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 55566899999999999999999999998877765
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=8.4e-06 Score=88.73 Aligned_cols=323 Identities=10% Similarity=-0.024 Sum_probs=192.9
Q ss_pred HHHHcCCChHHHHHHHhhcCC----CChhhHHHHHHHHHhcCCHHHHHHHHhcCC----CCC---c-----chHHHHHHH
Q 048358 160 DLYGKCDELIEAHKVFEEMTD----RDIVAWNNLISGYARLGQMKKARMLFDKMP----YTT---I-----VSWTAMISG 223 (541)
Q Consensus 160 ~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~---~-----~~~~~l~~~ 223 (541)
......|+++.+...++.++. .+..........+...|++++|...+.... ..+ . .....+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 344556777777777766632 122222334444556777777777765432 111 1 112223345
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCh----HHHHHHHHHHHccCChHHHHHHHHHHHHhCCC-----ccHhHHHHHHHHH
Q 048358 224 YTHIGSYAEALDVFRQMQMVGIEPDE----ISIVSVLPACAQLGSLELGEWIHMYCDKNHLL-----RRTVICNALIEMY 294 (541)
Q Consensus 224 ~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~ 294 (541)
+...|++++|...+++....-...+. .....+...+...|+++.|...+......... ....++..+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 56788888888888887653111121 22344455567788888888888777643111 1123455667778
Q ss_pred HhcCCHHHHHHHHHccCC-------C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCC--CHHHHHHHHHH
Q 048358 295 IKCGCINQASQLFDQMVE-------R----DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLK--VPP--NDITFIGLLSA 359 (541)
Q Consensus 295 ~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~p--~~~~~~~l~~~ 359 (541)
...|+++.|...+++... + ....+..+...+...|++++|...+.+..... ..+ ....+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 888999888888776522 1 11234445556677799999988888765421 112 12334445666
Q ss_pred HhccCcHHHHHHHHHHhhhhcCCCCcHhHH-----HHHHHHHHhcCCHHHHHHHHHhCCC-C-CCH----HHHHHHHHHH
Q 048358 360 CAHTGFWNEGLMYFDSMKRDHHIEHKIEHY-----GCLVDLLGRAGRLDQALNIIEEMPM-K-PDA----KIWGSLLSSC 428 (541)
Q Consensus 360 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~-~-p~~----~~~~~l~~~~ 428 (541)
+...|+++.|...++..............+ ...+..+...|+.+.|.+++..... . ... ..+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 778899999988888775421111111101 1122444567888888888877621 1 111 1134455667
Q ss_pred hhcCCHHHHHHHHHHHhccC------CCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 048358 429 RTYSNLEIAVIAMEHLLVLE------PEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKS 482 (541)
Q Consensus 429 ~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 482 (541)
...|+.++|...++++.... +....++..++.++.+.|+.++|.+.+.+..+..
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 88899999999888887642 1123467778888889999999998888887643
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.9e-06 Score=81.50 Aligned_cols=257 Identities=12% Similarity=-0.011 Sum_probs=148.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHH----ccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHh
Q 048358 222 SGYTHIGSYAEALDVFRQMQMVGIEPDE-ISIVSVLPACA----QLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIK 296 (541)
Q Consensus 222 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 296 (541)
..+...|++++|.+.+++..+. .|+. ..+.. ...+. ..+..+.+.+.+.. .....+........+...+..
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~ 126 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDD--YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEE 126 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHH
Confidence 3455677788888887777665 3333 23321 11222 23444444444433 111112223344556677788
Q ss_pred cCCHHHHHHHHHccCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHhccCcHHHHH
Q 048358 297 CGCINQASQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKV-PPND--ITFIGLLSACAHTGFWNEGL 370 (541)
Q Consensus 297 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~--~~~~~l~~~~~~~g~~~~a~ 370 (541)
.|++++|...+++..+ .+...+..+...+...|++++|..++++.....- .|+. ..|..+...+...|++++|.
T Consensus 127 ~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 127 AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 8888888888887744 2455677777888888888888888888776431 1222 23456777788888888888
Q ss_pred HHHHHhhhhcCCCCcHhHH-H--HHHHHHHhcCCHHHHHHH---HHhC-CCCC---CHHHHHHHHHHHhhcCCHHHHHHH
Q 048358 371 MYFDSMKRDHHIEHKIEHY-G--CLVDLLGRAGRLDQALNI---IEEM-PMKP---DAKIWGSLLSSCRTYSNLEIAVIA 440 (541)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~A~~~---~~~~-~~~p---~~~~~~~l~~~~~~~~~~~~a~~~ 440 (541)
.+++.........+..... + .++.-+...|....+.++ .... +..| ..........++...|+.+.|...
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~ 286 (355)
T cd05804 207 AIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKL 286 (355)
T ss_pred HHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 8888875422111222111 1 222333333432222222 1111 1101 112222455567888999999999
Q ss_pred HHHHhccCC---------CCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 048358 441 MEHLLVLEP---------EDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKS 482 (541)
Q Consensus 441 ~~~~~~~~~---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 482 (541)
++.+..... .........+.++...|++++|.+.+.......
T Consensus 287 L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 287 LAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 988765321 124455667777889999999999999887653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.5e-06 Score=83.43 Aligned_cols=307 Identities=11% Similarity=0.040 Sum_probs=195.8
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCChHHHH-HHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHH--
Q 048358 214 IVSWTAMISGYTHIGSYAEALDVFRQMQMVGI-EPDEISIV-SVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNA-- 289 (541)
Q Consensus 214 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 289 (541)
+..|..+...+...|+.+.+...+.+..+... .++..... .....+...|+++.|..+++.+.+.. +.+...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 34667777778888888887777766554321 22322222 22334677899999999999988874 334444442
Q ss_pred -HHHHHHhcCCHHHHHHHHHccCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc
Q 048358 290 -LIEMYIKCGCINQASQLFDQMVER---DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGF 365 (541)
Q Consensus 290 -l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 365 (541)
........+....+.+.+...... .......+...+...|++++|...+++..+.. +.+...+..+..++...|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 222222345666666666653232 23344556678889999999999999999976 5666778888999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCcH--hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC--C-HHHH-H--HHHHHHhhcCCHHH
Q 048358 366 WNEGLMYFDSMKRDHHIEHKI--EHYGCLVDLLGRAGRLDQALNIIEEM-PMKP--D-AKIW-G--SLLSSCRTYSNLEI 436 (541)
Q Consensus 366 ~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p--~-~~~~-~--~l~~~~~~~~~~~~ 436 (541)
+++|...+++........|+. ..|..+...+...|++++|..++++. ...| . .... . .++.-+...|....
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 999999999988743222332 34567888999999999999999996 2233 1 1111 1 22222334443332
Q ss_pred HHHH---HHHHhccCCCC--cchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCCh
Q 048358 437 AVIA---MEHLLVLEPED--TGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFL 511 (541)
Q Consensus 437 a~~~---~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 511 (541)
+.+. ........+.. .......+.++...|+.++|..+++.+........ . ....+..
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~-~----------------~~~~~~~ 306 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSAD-D----------------NKQPARD 306 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccC-c----------------hhhhHHh
Confidence 2222 12111111221 22223577778899999999999999876432210 0 0112344
Q ss_pred hHHHHHHHHHHHHHhcccCCcccccccC
Q 048358 512 KDIFWLLELLALHQDRAKDVIDIMYEDI 539 (541)
Q Consensus 512 ~~~~~~l~~~~~~~~~~~~a~~~~~~~i 539 (541)
..+....+.++...|+.++|.+.+.+++
T Consensus 307 ~~~~~l~A~~~~~~g~~~~A~~~L~~al 334 (355)
T cd05804 307 VGLPLAEALYAFAEGNYATALELLGPVR 334 (355)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5667888889999999999988887654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.9e-05 Score=76.71 Aligned_cols=379 Identities=13% Similarity=0.123 Sum_probs=228.8
Q ss_pred ChhhHHHHHHhccChhHHHHHHHHHHHhccC--CchhHHHHHHHHHHcCCChHHHHHHHhcCC-CCCcch-----HHHHH
Q 048358 13 LEDRFVPILQSCENLIELKKIHTQILKYLLS--QSNFLVTKMIDVCNSGGDLAYASLLFKQVK-EPNVFL-----YNAMI 84 (541)
Q Consensus 13 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~-----~~~ll 84 (541)
|...+..+|..-...+ +++.++++..+++ .|+...+..+.++...+-+.+-.++++++. ++++++ -|.++
T Consensus 951 D~~LW~~VL~e~n~~r--RqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLi 1028 (1666)
T KOG0985|consen 951 DPDLWAKVLNEENPYR--RQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLI 1028 (1666)
T ss_pred ChHHHHHHHhccChHH--HHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHH
Confidence 4444555553322222 5777777777764 467788888999999999999999999886 344443 33333
Q ss_pred HHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHc
Q 048358 85 RAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGK 164 (541)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 164 (541)
-...+. +.....+..+++-..+ .|+ +...+...+-+++|..+|... ..+....+.|+. .
T Consensus 1029 LtAika-d~trVm~YI~rLdnyD------a~~------ia~iai~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~ 1087 (1666)
T KOG0985|consen 1029 LTAIKA-DRTRVMEYINRLDNYD------APD------IAEIAIENQLYEEAFAIFKKF-----DMNVSAIQVLIE---N 1087 (1666)
T ss_pred HHHhhc-ChHHHHHHHHHhccCC------chh------HHHHHhhhhHHHHHHHHHHHh-----cccHHHHHHHHH---H
Confidence 333332 3445555555554433 233 344555666677777777543 334444444443 2
Q ss_pred CCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048358 165 CDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVG 244 (541)
Q Consensus 165 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 244 (541)
-+.++.|.+.-++..+| ..|..+..+-.+.|.+.+|.+-|-+. .|+..|..++....+.|.+++-.+++...++..
T Consensus 1088 i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~ 1163 (1666)
T KOG0985|consen 1088 IGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKV 1163 (1666)
T ss_pred hhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence 45677777777776554 35777777777788888877776554 355677777888888888888777777666655
Q ss_pred CCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhH--------------------------HHHHHHHHHhcC
Q 048358 245 IEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVI--------------------------CNALIEMYIKCG 298 (541)
Q Consensus 245 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------------------------~~~l~~~~~~~g 298 (541)
-.|... +.++-+|++.+++.+.+.++. -|+..- |..|...+...|
T Consensus 1164 ~E~~id--~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~Lg 1234 (1666)
T KOG0985|consen 1164 REPYID--SELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLG 1234 (1666)
T ss_pred cCccch--HHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 455443 356666777776665554432 233333 334444444444
Q ss_pred CHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 048358 299 CINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKR 378 (541)
Q Consensus 299 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 378 (541)
+++.|...-++. .+..+|...-.+|...+.+.-| +|...++-....-...++.-|...|-+++.+.+++....
T Consensus 1235 eyQ~AVD~aRKA--ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LG 1307 (1666)
T KOG0985|consen 1235 EYQGAVDAARKA--NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLG 1307 (1666)
T ss_pred HHHHHHHHhhhc--cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhc
Confidence 444444433321 3566788877777776665544 333333445556678899999999999999999988763
Q ss_pred hcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC----CCC------CCHHHHHHHHHHHhhcCCHHHH
Q 048358 379 DHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM----PMK------PDAKIWGSLLSSCRTYSNLEIA 437 (541)
Q Consensus 379 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~------p~~~~~~~l~~~~~~~~~~~~a 437 (541)
- -......|+.|.-.|.+- ++++..+.++-. .+. -....|.-++..|.+-..++.|
T Consensus 1308 L--ERAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNA 1373 (1666)
T KOG0985|consen 1308 L--ERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNA 1373 (1666)
T ss_pred h--hHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 1 133456677777777664 455555444332 211 1234455555555555555544
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.8e-06 Score=80.81 Aligned_cols=261 Identities=15% Similarity=0.118 Sum_probs=135.0
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCCcc--hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHH
Q 048358 191 SGYARLGQMKKARMLFDKMPYTTIV--SWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELG 268 (541)
Q Consensus 191 ~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 268 (541)
.+......|.+|+.+++.+...++. -|..+...|...|+++.|.++|.+.- .++..+..|.+.|+++.|
T Consensus 740 eaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHH
Confidence 3444455666666666655544332 34555566666666666666665431 123345556666666666
Q ss_pred HHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 048358 269 EWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPP 348 (541)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 348 (541)
.++-.+.. |.......|-+-..-+-..|++.+|.++|-.+..|+. .|..|-+.|..+..+++..+-... .
T Consensus 811 ~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d---~ 880 (1636)
T KOG3616|consen 811 FKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGD---H 880 (1636)
T ss_pred HHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhChh---h
Confidence 65544332 2333444555555556666666666666666666653 255566666666666555442211 1
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-C---HHHHH--
Q 048358 349 NDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKP-D---AKIWG-- 422 (541)
Q Consensus 349 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~---~~~~~-- 422 (541)
-..|-..+..-+...|++..|...|-+... |.+-++.|...+.+++|.++-+.-+-.. . ...|.
T Consensus 881 l~dt~~~f~~e~e~~g~lkaae~~flea~d----------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaks 950 (1636)
T KOG3616|consen 881 LHDTHKHFAKELEAEGDLKAAEEHFLEAGD----------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKS 950 (1636)
T ss_pred hhHHHHHHHHHHHhccChhHHHHHHHhhhh----------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHh
Confidence 123444555556666666666665554432 3344455555555555555544331100 0 01111
Q ss_pred -----------------HHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 048358 423 -----------------SLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKS 482 (541)
Q Consensus 423 -----------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 482 (541)
.-+...+..+-++-|.++-+-..+. .-+.+...++..+...|++++|-+-+-+..+.+
T Consensus 951 iggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~--k~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 951 IGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKD--KMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred hCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhc--cCccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 1111123344444444444333332 234566677777888888888877666655544
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1e-06 Score=86.36 Aligned_cols=403 Identities=14% Similarity=0.088 Sum_probs=238.2
Q ss_pred CCcchHHHHHH--HHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHh-C----
Q 048358 75 PNVFLYNAMIR--AYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKF-G---- 147 (541)
Q Consensus 75 ~~~~~~~~ll~--~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g---- 147 (541)
-|..+-..+++ .|..-|+.+.|.+-.+..... ..|..+.+.|.+..+++-|.-.+..|... |
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS~-----------~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAl 792 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKSD-----------SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARAL 792 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHhhh-----------HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHH
Confidence 45555555553 355667777776666554332 35666777777666666665555444321 1
Q ss_pred ----CCCchhhHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCCc-chHHHHHH
Q 048358 148 ----LKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTI-VSWTAMIS 222 (541)
Q Consensus 148 ----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~l~~ 222 (541)
-.++ .+-..+.......|.+++|+.+|++.. -|..|-..|...|.+++|.++-+.-.+-.. .||.....
T Consensus 793 R~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ck-----R~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~ 866 (1416)
T KOG3617|consen 793 RRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCK-----RYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAK 866 (1416)
T ss_pred HHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHH-----HHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHH
Confidence 1122 333344445567789999999998864 355566677788999999888665332221 46777777
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHH
Q 048358 223 GYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQ 302 (541)
Q Consensus 223 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 302 (541)
-+-..++.+.|++.|++.. .|-...+..+. .++...+++.+.+ .|...|..-...+...|+.+.
T Consensus 867 ~Lear~Di~~AleyyEK~~----~hafev~rmL~------e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~Gemda 930 (1416)
T KOG3617|consen 867 YLEARRDIEAALEYYEKAG----VHAFEVFRMLK------EYPKQIEQYVRRK------RDESLYSWWGQYLESVGEMDA 930 (1416)
T ss_pred HHHhhccHHHHHHHHHhcC----ChHHHHHHHHH------hChHHHHHHHHhc------cchHHHHHHHHHHhcccchHH
Confidence 7777888999999988753 22111111111 1222222222222 245667777777778888888
Q ss_pred HHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhc--
Q 048358 303 ASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDH-- 380 (541)
Q Consensus 303 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-- 380 (541)
|+.+|.... -|.+++...|-+|+.++|-.+-++ .-|......|.+.|...|++.+|...|-+.+.-.
T Consensus 931 Al~~Y~~A~-----D~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnA 999 (1416)
T KOG3617|consen 931 ALSFYSSAK-----DYFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNA 999 (1416)
T ss_pred HHHHHHHhh-----hhhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 888887654 366677777778888888777554 2356667778888888888888888877665310
Q ss_pred ---CCCCcHhHHHHHHHHHHh--cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHH--------Hh--
Q 048358 381 ---HIEHKIEHYGCLVDLLGR--AGRLDQALNIIEEMPMKPDAKIWGSLLSSCRTYSNLEIAVIAMEH--------LL-- 445 (541)
Q Consensus 381 ---~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~--------~~-- 445 (541)
-...+. -..|...... ..+.-.|.++|++.+...+ ..+-.|.+.|.+.+|+++.=+ ++
T Consensus 1000 IRlcKEnd~--~d~L~nlal~s~~~d~v~aArYyEe~g~~~~-----~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~ 1072 (1416)
T KOG3617|consen 1000 IRLCKENDM--KDRLANLALMSGGSDLVSAARYYEELGGYAH-----KAVMLYHKAGMIGKALELAFRTQQFSALDLIAK 1072 (1416)
T ss_pred HHHHHhcCH--HHHHHHHHhhcCchhHHHHHHHHHHcchhhh-----HHHHHHHhhcchHHHHHHHHhhcccHHHHHHHH
Confidence 000111 1223333332 2344456677777753222 223346677777777664211 11
Q ss_pred ccCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHhhh----------CCCccCCceeEEEEcCEEEEEEeCC-CCCCCh--
Q 048358 446 VLEPE-DTGNYVLLSNIYAKHGRWEDVSRMRKLIRS----------KSMKKTPGCSLIEVNNEVQEFVSGD-DTKPFL-- 511 (541)
Q Consensus 446 ~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~-- 511 (541)
.++|. ||..+..-++.+....++++|..++-..++ +|++.+ ..+++.+.-. ...|+.
T Consensus 1073 DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vt---------ee~aE~mTp~Kd~~~~e~~ 1143 (1416)
T KOG3617|consen 1073 DLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVT---------EEFAELMTPTKDDMPNEQE 1143 (1416)
T ss_pred hcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchh---------HHHHHhcCcCcCCCccHHH
Confidence 23443 677888888889999999999988766543 233221 1122222222 244544
Q ss_pred -hHHHHHHHHHHHHHhcccCCcccccc
Q 048358 512 -KDIFWLLELLALHQDRAKDVIDIMYE 537 (541)
Q Consensus 512 -~~~~~~l~~~~~~~~~~~~a~~~~~~ 537 (541)
..++..++.+-.++|.+-.|...+-|
T Consensus 1144 R~~vLeqvae~c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1144 RKQVLEQVAELCLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHhh
Confidence 34566777777788877666555443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=9.4e-08 Score=77.58 Aligned_cols=124 Identities=7% Similarity=-0.097 Sum_probs=93.1
Q ss_pred HHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccC
Q 048358 371 MYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLE 448 (541)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 448 (541)
.+++...+. .|+. +..+...+...|++++|...|+.. ...| +...|..+..++...|++++|+..|+++++.+
T Consensus 14 ~~~~~al~~---~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSV---DPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHc---CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 445555442 3443 455677778888888888888877 5555 56777888888888888888888888888888
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHH
Q 048358 449 PEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQ 525 (541)
Q Consensus 449 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 525 (541)
|.++.++..++.++.+.|++++|...++.... ..|+++..+...+++...+
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~--------------------------~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK--------------------------MSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------------hCCCChHHHHHHHHHHHHH
Confidence 88888888888888888888888888888765 3567777777776665544
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.4e-07 Score=79.52 Aligned_cols=147 Identities=12% Similarity=0.128 Sum_probs=109.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCC
Q 048358 322 IGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGR 401 (541)
Q Consensus 322 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 401 (541)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+. -+.+...|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCC
Confidence 3456777777776544432221 11 0122356777788888877764 36778888999999999999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHH-HhhcCC--HHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 048358 402 LDQALNIIEEM-PMKP-DAKIWGSLLSS-CRTYSN--LEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRK 476 (541)
Q Consensus 402 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~-~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 476 (541)
+++|...|++. ...| +...+..+..+ +...|+ .++|.++++++++.+|.++.++..++..+.+.|++++|...++
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999998887 5566 56667777766 466676 5899999999999999999999999999999999999999999
Q ss_pred HhhhCC
Q 048358 477 LIRSKS 482 (541)
Q Consensus 477 ~m~~~~ 482 (541)
++.+..
T Consensus 169 ~aL~l~ 174 (198)
T PRK10370 169 KVLDLN 174 (198)
T ss_pred HHHhhC
Confidence 987754
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.8e-07 Score=76.94 Aligned_cols=303 Identities=13% Similarity=0.066 Sum_probs=155.1
Q ss_pred HHHHHHHHHcCCChHHHHHHHhhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHhcCCCC--CcchHHH-HHHHHHhcC
Q 048358 155 ENALLDLYGKCDELIEAHKVFEEMTDR---DIVAWNNLISGYARLGQMKKARMLFDKMPYT--TIVSWTA-MISGYTHIG 228 (541)
Q Consensus 155 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~-l~~~~~~~g 228 (541)
+.+.+..+.+..++..|.+++..-.++ +......+..+|-...++..|-..++++... ...-|.. -...+.+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 455555566677777777777665542 4455666677777777777777777776532 2222221 234455666
Q ss_pred ChHHHHHHHHHHHHCCCCCChHHHHHHHHH--HHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHH
Q 048358 229 SYAEALDVFRQMQMVGIEPDEISIVSVLPA--CAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQL 306 (541)
Q Consensus 229 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 306 (541)
.+..|+++...|.+. |+...-..-+.+ ....+++..+..+.++.-.. .+..+.+...-...+.|+++.|.+-
T Consensus 93 i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 93 IYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred ccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHHH
Confidence 777777777666532 332222222222 23445555555555544321 1334444444455566666666666
Q ss_pred HHccCCC----ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH----HHHHHHHHhccCcHHHHHHHHHHhhh
Q 048358 307 FDQMVER----DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDIT----FIGLLSACAHTGFWNEGLMYFDSMKR 378 (541)
Q Consensus 307 ~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~----~~~l~~~~~~~g~~~~a~~~~~~~~~ 378 (541)
|+...+- ....||..+. +.+.++++.|+++..+++++|++..+.. -.-.+++- ..|+.. .+..
T Consensus 167 FqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-svgNt~---~lh~---- 237 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-SVGNTL---VLHQ---- 237 (459)
T ss_pred HHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh-cccchH---HHHH----
Confidence 6665442 2334544433 3344666666666666666665432210 00000000 000000 0000
Q ss_pred hcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcch
Q 048358 379 DHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMP----MKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGN 454 (541)
Q Consensus 379 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 454 (541)
.--+..+|.-...+.+.|+++.|.+-+.+|+ -..|++|...+.-. -..+++....+-+.-+++++|-.+++
T Consensus 238 ----Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ET 312 (459)
T KOG4340|consen 238 ----SALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFPPET 312 (459)
T ss_pred ----HHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCChHH
Confidence 0001223333444556677777777777773 22355555554332 12344555555555566666666667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 048358 455 YVLLSNIYAKHGRWEDVSRMRKL 477 (541)
Q Consensus 455 ~~~l~~~~~~~g~~~~A~~~~~~ 477 (541)
+..++-.|++..-++-|-.++.+
T Consensus 313 FANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 313 FANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHHHHhhhHHHhHHHHHHhh
Confidence 77777777777666666665543
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.8e-08 Score=97.97 Aligned_cols=131 Identities=14% Similarity=0.067 Sum_probs=66.5
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHH
Q 048358 348 PNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPDA-KIWGSLL 425 (541)
Q Consensus 348 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~ 425 (541)
.+...+..|.......|.+++|..+++.+.+. .|.+......++..+.+.+++++|+..+++. ...|+. .....+.
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a 161 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA 161 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 34445555555555555555555555555542 2333444445555555555555555555554 334432 3333333
Q ss_pred HHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048358 426 SSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 426 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 480 (541)
.++.+.|++++|..+|++++..+|+++.++..++.++...|+.++|...|++..+
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455555555555555555554455555555555555555555555555555443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.86 E-value=6.5e-07 Score=89.59 Aligned_cols=435 Identities=13% Similarity=0.056 Sum_probs=263.7
Q ss_pred ChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHH
Q 048358 92 LYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEA 171 (541)
Q Consensus 92 ~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A 171 (541)
+...|+..|-+..+.. +.=...|..|...|....+...|.+.|+.+.+.+ ..+........+.|++..+++.|
T Consensus 473 ~~~~al~ali~alrld------~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a 545 (1238)
T KOG1127|consen 473 NSALALHALIRALRLD------VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEA 545 (1238)
T ss_pred hHHHHHHHHHHHHhcc------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHH
Confidence 3666777776666654 3334678888888888778888999998887764 34566777888999999999999
Q ss_pred HHHHhhcCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048358 172 HKVFEEMTDRD-----IVAWNNLISGYARLGQMKKARMLFDKMPY---TTIVSWTAMISGYTHIGSYAEALDVFRQMQMV 243 (541)
Q Consensus 172 ~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 243 (541)
..+.-...+.+ ...|....-.|.+.++...|..-|+...+ .|...|..++.+|...|++..|+++|.+....
T Consensus 546 ~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L 625 (1238)
T KOG1127|consen 546 FEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL 625 (1238)
T ss_pred HHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc
Confidence 88855444421 12344445557778888888888887654 35578888999999999999999999887654
Q ss_pred CCCCChHHHHHHH--HHHHccCChHHHHHHHHHHHHhC------CCccHhHHHHHHHHHHhcCCHHHHHHHHHccC----
Q 048358 244 GIEPDEISIVSVL--PACAQLGSLELGEWIHMYCDKNH------LLRRTVICNALIEMYIKCGCINQASQLFDQMV---- 311 (541)
Q Consensus 244 ~~~p~~~~~~~ll--~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---- 311 (541)
.|+. +|...- ..-+..|.+.++...+..+.... ..--..++-.+...+.-.|-..+|..+++.-.
T Consensus 626 --rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~ 702 (1238)
T KOG1127|consen 626 --RPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFI 702 (1238)
T ss_pred --CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 5543 333322 23456788888877777665431 11112222223333333333333333333221
Q ss_pred -------CCChhHHHHHHHHHHh---cC-C-h-HHHHHH-HHHHHhCCCC--------------------CCHHHHHHHH
Q 048358 312 -------ERDVVSWSTVIGGLAN---HG-K-A-HKAIHL-FHEMQRLKVP--------------------PNDITFIGLL 357 (541)
Q Consensus 312 -------~~~~~~~~~l~~~~~~---~~-~-~-~~a~~~-~~~m~~~~~~--------------------p~~~~~~~l~ 357 (541)
..+...|-.+.++|.- .. + + .....+ +.+....+.- .+..+|..++
T Consensus 703 ~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLG 782 (1238)
T KOG1127|consen 703 VSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLG 782 (1238)
T ss_pred HHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHh
Confidence 1122222222221110 00 0 0 000000 1111111111 1122333333
Q ss_pred HHHhc-------c-CcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 048358 358 SACAH-------T-GFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSS 427 (541)
Q Consensus 358 ~~~~~-------~-g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 427 (541)
..|.+ . .+...|+..+....+. -..+..+|+.|.-. ...|.+.-|..-|-+- ...| ...+|..+.-.
T Consensus 783 inylr~f~~l~et~~~~~~Ai~c~KkaV~L--~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL 859 (1238)
T KOG1127|consen 783 INYLRYFLLLGETMKDACTAIRCCKKAVSL--CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVL 859 (1238)
T ss_pred HHHHHHHHHcCCcchhHHHHHHHHHHHHHH--hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheecccee
Confidence 33222 1 2234567777766653 24566667766655 5567777777766555 2334 66888888888
Q ss_pred HhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHH--hhhCCCccCCcee-E-----EEEcC-EE
Q 048358 428 CRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKL--IRSKSMKKTPGCS-L-----IEVNN-EV 498 (541)
Q Consensus 428 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--m~~~~~~~~~~~~-~-----~~~~~-~~ 498 (541)
+....+++.|...|.+...++|.+...|...+.+....|+.-++..+|.. ....+-...+++. | ++..+ ..
T Consensus 860 ~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~ 939 (1238)
T KOG1127|consen 860 VLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNI 939 (1238)
T ss_pred EEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccch
Confidence 99999999999999999999999999999999999999999999988887 2222222222211 1 11111 11
Q ss_pred EEEEeCC--------------CCCCChhHHHHHHHHHHHHHhcccCCcccccccC
Q 048358 499 QEFVSGD--------------DTKPFLKDIFWLLELLALHQDRAKDVIDIMYEDI 539 (541)
Q Consensus 499 ~~~~~~~--------------~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~i 539 (541)
+.++... +.+|+...+|...+...++++.+++|.+...+.|
T Consensus 940 e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 940 EESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred HHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 1111000 5699999999999999999999998877654433
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.86 E-value=6.1e-08 Score=86.87 Aligned_cols=183 Identities=14% Similarity=0.055 Sum_probs=108.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcH-hHH
Q 048358 314 DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPND---ITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKI-EHY 389 (541)
Q Consensus 314 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~ 389 (541)
....+..+...+...|++++|...|+++.... +.+. .++..+..++...|++++|...++.+.+...-.|.. ..+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 45566666677777777777777777776643 2222 345566667777777777777777776643111111 123
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHH
Q 048358 390 GCLVDLLGRA--------GRLDQALNIIEEM-PMKPDA-KIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLS 459 (541)
Q Consensus 390 ~~l~~~~~~~--------g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 459 (541)
..+..++... |++++|.+.|+++ ...|+. ..+..+..... .... . ......++
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~----~~~~---~----------~~~~~~~a 173 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY----LRNR---L----------AGKELYVA 173 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH----HHHH---H----------HHHHHHHH
Confidence 3344444332 4455555555544 222322 11111111000 0000 0 01123567
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCcccccc
Q 048358 460 NIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMYE 537 (541)
Q Consensus 460 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 537 (541)
..|.+.|++++|...++...+... .+|..+.++..++.++..+|+.++|.+.++.
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p-----------------------~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~ 228 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYP-----------------------DTPATEEALARLVEAYLKLGLKDLAQDAAAV 228 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCC-----------------------CCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 889999999999999999876532 2477789999999999999999999987654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.5e-07 Score=81.99 Aligned_cols=182 Identities=12% Similarity=0.011 Sum_probs=133.1
Q ss_pred ccHhHHHHHHHHHHhcCCHHHHHHHHHccCC--C-Ch---hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH---H
Q 048358 282 RRTVICNALIEMYIKCGCINQASQLFDQMVE--R-DV---VSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDI---T 352 (541)
Q Consensus 282 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~ 352 (541)
.....+..++..+...|+++.|...|+++.. | ++ .++..+..++...|++++|...++++.+.. +.+.. +
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHHH
Confidence 4566788889999999999999999998854 2 22 467778899999999999999999998864 22222 4
Q ss_pred HHHHHHHHhcc--------CcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 048358 353 FIGLLSACAHT--------GFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKPDAKIWGSL 424 (541)
Q Consensus 353 ~~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 424 (541)
+..+..++... |+++.|.+.|+.+...+ +.+...+..+..... ..... ......+
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~~ 172 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRNRL-----------AGKELYV 172 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHHHH-----------HHHHHHH
Confidence 55556666554 78999999999998753 333333322221111 11100 0111245
Q ss_pred HHHHhhcCCHHHHHHHHHHHhccCCCC---cchHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 425 LSSCRTYSNLEIAVIAMEHLLVLEPED---TGNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 425 ~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
...+.+.|++++|+..++++++..|++ +..+..++.++.+.|++++|...++.+...
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 566889999999999999999887654 478999999999999999999999888654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.83 E-value=6.1e-07 Score=76.63 Aligned_cols=156 Identities=16% Similarity=0.094 Sum_probs=93.2
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHhhc
Q 048358 354 IGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM--PMKPDAKIWGSLLSSCRTY 431 (541)
Q Consensus 354 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~ 431 (541)
..+-..+...|+-+....+....... .+.+......++....+.|++..|...|++. .-.+|...|+.+..+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHc
Confidence 44445555556655555555554432 2344444455666666677777777666666 2334566666666667777
Q ss_pred CCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCCh
Q 048358 432 SNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFL 511 (541)
Q Consensus 432 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 511 (541)
|+++.|...|.+++++.|.++..++.|+..|.-.|+.+.|..++......+ |.+
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~--------------------------~ad 201 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP--------------------------AAD 201 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC--------------------------CCc
Confidence 777777777777777777767777777777777777777776666654432 234
Q ss_pred hHHHHHHHHHHHHHhcccCCcccccc
Q 048358 512 KDIFWLLELLALHQDRAKDVIDIMYE 537 (541)
Q Consensus 512 ~~~~~~l~~~~~~~~~~~~a~~~~~~ 537 (541)
+.+...|..+.-.+|+.++|.++..+
T Consensus 202 ~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 202 SRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred hHHHHHHHHHHhhcCChHHHHhhccc
Confidence 44555555555555555555555444
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.7e-07 Score=82.93 Aligned_cols=204 Identities=12% Similarity=0.042 Sum_probs=139.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-cHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHH
Q 048358 318 WSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTG-FWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLL 396 (541)
Q Consensus 318 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 396 (541)
+..+-..+...++.++|+.+..++++.. +-+..+|+.-..++...| ++++++..++.+.+.+ +.+..+|+.-...+
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n--pknyqaW~~R~~~l 116 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN--PKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC--CcchHHhHHHHHHH
Confidence 3334445566788999999999988864 334445555555555666 6799999999998753 56666777666666
Q ss_pred HhcCCH--HHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhc---CCH-
Q 048358 397 GRAGRL--DQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKH---GRW- 468 (541)
Q Consensus 397 ~~~g~~--~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~- 468 (541)
.+.|+. ++++.+++++ ...| +..+|.....++...|+++++++.++++++.+|.|..+|+..+.++.+. |..
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccc
Confidence 677763 6788888777 5556 6789999999999999999999999999999999999999999888775 333
Q ss_pred ---HHHHHHHHHhhhCCCccCCcee---EEEEc--------CEEEEEEe-CCCCCCChhHHHHHHHHHHHH
Q 048358 469 ---EDVSRMRKLIRSKSMKKTPGCS---LIEVN--------NEVQEFVS-GDDTKPFLKDIFWLLELLALH 524 (541)
Q Consensus 469 ---~~A~~~~~~m~~~~~~~~~~~~---~~~~~--------~~~~~~~~-~~~~~p~~~~~~~~l~~~~~~ 524 (541)
+++....+++....+...+.+. ++... .....++. ....+|+++.++..|..+|..
T Consensus 197 ~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 197 AMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred ccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 4566777666554332222110 00000 00111111 124678888888888888875
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.3e-08 Score=91.71 Aligned_cols=217 Identities=18% Similarity=0.200 Sum_probs=162.6
Q ss_pred HHHHHhcCCHHHHHHHHHccCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHH
Q 048358 291 IEMYIKCGCINQASQLFDQMVER---DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWN 367 (541)
Q Consensus 291 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 367 (541)
..-+.+.|++.+|.-.|+..++. +...|.-|.......++-..|+..+++..+.. +-|......|.-.|...|.-.
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 44567889999999999988665 45688899999999999999999999999976 667788888889999999999
Q ss_pred HHHHHHHHhhhhcCCCCcHhHHHHHH---------HHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHhhcCCH
Q 048358 368 EGLMYFDSMKRDHHIEHKIEHYGCLV---------DLLGRAGRLDQALNIIEEM----PMKPDAKIWGSLLSSCRTYSNL 434 (541)
Q Consensus 368 ~a~~~~~~~~~~~~~~~~~~~~~~l~---------~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~~~~ 434 (541)
.|...++.-.... +|-.. .... ..+..........++|-++ +.++|+.+...|.-.|.-.|++
T Consensus 371 ~Al~~L~~Wi~~~--p~y~~--l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 371 QALKMLDKWIRNK--PKYVH--LVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHHHhC--ccchh--ccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 9999998886531 11110 0000 1111222234445555554 4456777888888888999999
Q ss_pred HHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHH
Q 048358 435 EIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDI 514 (541)
Q Consensus 435 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 514 (541)
++|+..|+.++...|.|...|+.|+-.++...+.++|+..|++.++. .|.....
T Consensus 447 draiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--------------------------qP~yVR~ 500 (579)
T KOG1125|consen 447 DRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--------------------------QPGYVRV 500 (579)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--------------------------CCCeeee
Confidence 99999999999999999999999999999999999999999998764 3444444
Q ss_pred HHHHHHHHHHHhcccCCccccccc
Q 048358 515 FWLLELLALHQDRAKDVIDIMYED 538 (541)
Q Consensus 515 ~~~l~~~~~~~~~~~~a~~~~~~~ 538 (541)
...||.-+-.+|-++||+..+..+
T Consensus 501 RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 501 RYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred ehhhhhhhhhhhhHHHHHHHHHHH
Confidence 455555555666666665554443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.78 E-value=8.7e-07 Score=91.70 Aligned_cols=201 Identities=12% Similarity=0.151 Sum_probs=165.2
Q ss_pred CccHhHHHHHHHHHHhcCCHHHHHHHHHccCCC--------ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 048358 281 LRRTVICNALIEMYIKCGCINQASQLFDQMVER--------DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDIT 352 (541)
Q Consensus 281 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 352 (541)
|.+...|-..|......++.++|++++++.... -...|.++++.-...|.-+...++|+++.+.. .....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHH
Confidence 444567888888889999999999999887442 23478888888777888888899999988753 22456
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHH
Q 048358 353 FIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPD---AKIWGSLLSSC 428 (541)
Q Consensus 353 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~ 428 (541)
|..|...|.+.+.+++|.++++.|.++++ .....|..++..+.++.+-+.|..++.+. ..-|. .......+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 78888999999999999999999999765 66777999999999999999999999886 33343 44455555666
Q ss_pred hhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCcc
Q 048358 429 RTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKK 485 (541)
Q Consensus 429 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 485 (541)
.+.|+.+++..+|+..+...|...+.|+.+++.-.+.|+.+.++.+|+++...+..+
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 789999999999999999999999999999999999999999999999998887654
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.5e-06 Score=76.02 Aligned_cols=191 Identities=10% Similarity=0.082 Sum_probs=123.9
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHHccCCC---ChhHHHHHHHHHHhcCCh--HHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048358 286 ICNALIEMYIKCG-CINQASQLFDQMVER---DVVSWSTVIGGLANHGKA--HKAIHLFHEMQRLKVPPNDITFIGLLSA 359 (541)
Q Consensus 286 ~~~~l~~~~~~~g-~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~--~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 359 (541)
+|+.-..++...| ++++++..++++.+. +..+|+...-.+.+.|+. ++++.+++++.+.. +-|..+|.....+
T Consensus 73 aW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~ 151 (320)
T PLN02789 73 VWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWV 151 (320)
T ss_pred HHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3443444444444 456666666665332 334455444444444542 56677777777765 5567777777777
Q ss_pred HhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhc---CCH----HHHHHHHHhC-CCCC-CHHHHHHHHHHHhh
Q 048358 360 CAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRA---GRL----DQALNIIEEM-PMKP-DAKIWGSLLSSCRT 430 (541)
Q Consensus 360 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 430 (541)
+...|+++++++.++++.+.. +.+...|+.....+.+. |.. ++++++..++ ...| |...|+.+...+..
T Consensus 152 l~~l~~~~eeL~~~~~~I~~d--~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 152 LRTLGGWEDELEYCHQLLEED--VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKD 229 (320)
T ss_pred HHHhhhHHHHHHHHHHHHHHC--CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhc
Confidence 777788888888888887643 45556666665555443 222 4566666444 5556 56778777777766
Q ss_pred c----CCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC------------------CHHHHHHHHHHhh
Q 048358 431 Y----SNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHG------------------RWEDVSRMRKLIR 479 (541)
Q Consensus 431 ~----~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~m~ 479 (541)
. +...+|...+.++.+.+|.++.++..|++.|.... ..++|.++++.+.
T Consensus 230 ~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 230 DKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred CCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 2 44567888999988888999999999999998743 2467888888873
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.1e-06 Score=83.42 Aligned_cols=212 Identities=13% Similarity=0.061 Sum_probs=162.5
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC--CChhHHHHHHHHHHhcCC
Q 048358 253 VSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE--RDVVSWSTVIGGLANHGK 330 (541)
Q Consensus 253 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~ 330 (541)
..+...+...|-...|..+++.. ..|...+.+|+..|+..+|..+..+-.+ |++..|..+.+......-
T Consensus 402 ~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHH
Confidence 34455566677777777777643 4566778888888888888887766543 577778877777776666
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHH
Q 048358 331 AHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIE 410 (541)
Q Consensus 331 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 410 (541)
+++|.++.+..... .-..+.......++++++.+.|+.-.+-+ +....+|-.+..+..+.+++..|.+.|.
T Consensus 473 yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 473 YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN--PLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC--ccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 78888877654332 11122222334688899998888877643 5566778888888999999999999888
Q ss_pred hC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 048358 411 EM-PMKPD-AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKS 482 (541)
Q Consensus 411 ~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 482 (541)
.. ...|| ...|+++-.+|.+.|+..+|...+.++++-+-.+...|....-.....|.|++|.+.+.++.+..
T Consensus 544 rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 544 RCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 77 66775 58899999999999999999999999999888888899999999999999999999999887653
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.2e-06 Score=73.63 Aligned_cols=156 Identities=13% Similarity=0.162 Sum_probs=122.1
Q ss_pred HHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHH
Q 048358 290 LIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEG 369 (541)
Q Consensus 290 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 369 (541)
-+-.|...|+++.+....+.+..+. ..+...++.+++...+++....+ +.|...|..+...|...|+++.|
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 3456888888887765554433221 01223567788888888888876 78888999999999999999999
Q ss_pred HHHHHHhhhhcCCCCcHhHHHHHHHHH-HhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 048358 370 LMYFDSMKRDHHIEHKIEHYGCLVDLL-GRAGR--LDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHL 444 (541)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 444 (541)
...|++..+. .+.+...+..+..++ ...|+ .++|.+++++. ...| +...+..+...+...|++++|+..++++
T Consensus 93 ~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 93 LLAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999874 356778888888864 67777 59999999998 6666 5677888888899999999999999999
Q ss_pred hccCCCCcchHH
Q 048358 445 LVLEPEDTGNYV 456 (541)
Q Consensus 445 ~~~~~~~~~~~~ 456 (541)
++..|++..-+.
T Consensus 171 L~l~~~~~~r~~ 182 (198)
T PRK10370 171 LDLNSPRVNRTQ 182 (198)
T ss_pred HhhCCCCccHHH
Confidence 999988665443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.4e-07 Score=73.63 Aligned_cols=123 Identities=9% Similarity=0.014 Sum_probs=100.6
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 048358 336 HLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PM 414 (541)
Q Consensus 336 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 414 (541)
.+|++..+. .|+. +..+..++...|++++|...|+..... -+.+...|..+..++.+.|++++|...|++. ..
T Consensus 14 ~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 456666654 3543 555677888899999999999998874 3667888899999999999999999999988 55
Q ss_pred CC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 048358 415 KP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAK 464 (541)
Q Consensus 415 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 464 (541)
.| +...+..+..++...|+.++|+..|+++++..|+++..+...+.+...
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 56 678888899999999999999999999999999999888877766543
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.8e-05 Score=65.25 Aligned_cols=174 Identities=13% Similarity=0.098 Sum_probs=93.4
Q ss_pred HHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 048358 272 HMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDI 351 (541)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 351 (541)
.+.+.......+......-...|+..|++++|.+..... .+......=...+.+..+.+-|...+++|.+. .+..
T Consensus 96 ~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~--~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~ 170 (299)
T KOG3081|consen 96 YELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG--ENLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDA 170 (299)
T ss_pred HHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHH
Confidence 333333333333333333345566677777777766662 22222222334455566667777777777663 2555
Q ss_pred HHHHHHHHHhc----cCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHH
Q 048358 352 TFIGLLSACAH----TGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM--PMKPDAKIWGSLL 425 (541)
Q Consensus 352 ~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~ 425 (541)
|.+.|..++.+ .+.+..|.-+|+++..+ .+|+..+.+....++...|++++|..+++.. +...++.+...++
T Consensus 171 tLtQLA~awv~la~ggek~qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nli 248 (299)
T KOG3081|consen 171 TLTQLAQAWVKLATGGEKIQDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLI 248 (299)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 66656555443 34566666666666653 3566666666666666666666666666665 2223455555555
Q ss_pred HHHhhcCCH-HHHHHHHHHHhccCCCCc
Q 048358 426 SSCRTYSNL-EIAVIAMEHLLVLEPEDT 452 (541)
Q Consensus 426 ~~~~~~~~~-~~a~~~~~~~~~~~~~~~ 452 (541)
......|.. +-..+.+.++....|.++
T Consensus 249 v~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 249 VLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 443333433 334445555555555543
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.4e-05 Score=68.43 Aligned_cols=243 Identities=13% Similarity=0.092 Sum_probs=160.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCH
Q 048358 221 ISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCI 300 (541)
Q Consensus 221 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 300 (541)
++-+.-.|.+..++..-...... +-+...-.-+.++|...|.......- +.... .|.......+......-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~e---I~~~~-~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVISE---IKEGK-ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccccc---ccccc-CChHHHHHHHHHHhhCcchh
Confidence 45566678888877666554432 23344444456667777765433222 22222 33344444444444445554
Q ss_pred HHHHH-HHHccCCC----ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 048358 301 NQASQ-LFDQMVER----DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDS 375 (541)
Q Consensus 301 ~~A~~-~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 375 (541)
+.-.. +.+.+..+ +......-...|+..+++++|++..... -+......=+..+.+..+++-|.+.++.
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333 33333332 2233333345688899999999988762 1233333345556678889999999999
Q ss_pred hhhhcCCCCcHhHHHHHHHHHH----hcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCC
Q 048358 376 MKRDHHIEHKIEHYGCLVDLLG----RAGRLDQALNIIEEM--PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEP 449 (541)
Q Consensus 376 ~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 449 (541)
|..- .+..+.+.|..++. ..+.+.+|.-+|+++ +..|+..+.+....++...|++++|..+++.++..++
T Consensus 163 mq~i----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 163 MQQI----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHcc----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 9862 45556666666665 356789999999999 4778999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhcCCHHHHH-HHHHHhh
Q 048358 450 EDTGNYVLLSNIYAKHGRWEDVS-RMRKLIR 479 (541)
Q Consensus 450 ~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~ 479 (541)
.+++++..++.+-...|...++. +.+..++
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 99999999988888888776654 4455544
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.4e-06 Score=70.53 Aligned_cols=156 Identities=15% Similarity=0.161 Sum_probs=105.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHh
Q 048358 319 STVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGR 398 (541)
Q Consensus 319 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 398 (541)
..+-..+...|+-+....+........ +.+.......+......|++..|+..+.+... .-++|...|+.+.-+|-+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 444555666666666666665544322 33334444566667777777777777777765 446777777777777777
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 048358 399 AGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRK 476 (541)
Q Consensus 399 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 476 (541)
.|+++.|..-|.+. .+.| ++...+.+.-.+.-.|+.+.|..++.......+.+..+-..|+.+....|++++|..+..
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 77777777776665 4445 456666777777777777777777777777666677777777777777777777776654
Q ss_pred H
Q 048358 477 L 477 (541)
Q Consensus 477 ~ 477 (541)
.
T Consensus 227 ~ 227 (257)
T COG5010 227 Q 227 (257)
T ss_pred c
Confidence 3
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.4e-06 Score=80.20 Aligned_cols=205 Identities=15% Similarity=0.180 Sum_probs=104.7
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHH
Q 048358 191 SGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEW 270 (541)
Q Consensus 191 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 270 (541)
..+...|-...|..+|++. ..|..++.+|...|+..+|..+..+-.+. +||...|..+........-+++|.+
T Consensus 406 ell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yEkawE 478 (777)
T KOG1128|consen 406 ELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYEKAWE 478 (777)
T ss_pred HHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHHHHHH
Confidence 3344444444444444443 34555555555555555555555555442 4555555555444444444444444
Q ss_pred HHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 048358 271 IHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVER---DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVP 347 (541)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 347 (541)
+.+..-. ..-..+.....+.++++++.+.|+.-.+- -..+|-.+..+..+.+++..|.+.|....... +
T Consensus 479 lsn~~sa-------rA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~-P 550 (777)
T KOG1128|consen 479 LSNYISA-------RAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE-P 550 (777)
T ss_pred HhhhhhH-------HHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC-C
Confidence 4443221 11122222223345566666666544332 23355555555556666666666666555432 3
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 048358 348 PNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM 412 (541)
Q Consensus 348 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 412 (541)
-+...|+.+-.+|.+.++-.+|...+.+..+- . ..+...|...+......|.+++|++.+.++
T Consensus 551 d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 551 DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 33455666666666666666666666666553 2 333444555555666666666666665554
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.9e-06 Score=68.57 Aligned_cols=97 Identities=9% Similarity=0.030 Sum_probs=86.0
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 048358 385 KIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIY 462 (541)
Q Consensus 385 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 462 (541)
+....-.+...+...|++++|.++|+-. .+.| +..-|..|..++...|++++|+..|.++..++|++|.++..++.++
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3444556777788999999999999998 6667 5677888888899999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHhhhC
Q 048358 463 AKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 463 ~~~g~~~~A~~~~~~m~~~ 481 (541)
...|+.+.|.+-|+.....
T Consensus 114 L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999988764
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.57 E-value=7.9e-08 Score=55.40 Aligned_cols=34 Identities=21% Similarity=0.152 Sum_probs=27.4
Q ss_pred hccCCchhHHHHHHHHHHcCCChHHHHHHHhcCC
Q 048358 40 YLLSQSNFLVTKMIDVCNSGGDLAYASLLFKQVK 73 (541)
Q Consensus 40 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 73 (541)
.|+.||..+||.||..|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3677888888888888888888888888888774
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=7.7e-06 Score=83.34 Aligned_cols=160 Identities=10% Similarity=-0.012 Sum_probs=130.6
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHH
Q 048358 314 DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLV 393 (541)
Q Consensus 314 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 393 (541)
++..+-.|.......|.+++|..+|+...+.. |-+......++.++.+.+.+++|...++..... -+.+......+.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a 161 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEA 161 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHH
Confidence 57888999999999999999999999999874 445567778889999999999999999999974 466778889999
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHH
Q 048358 394 DLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDV 471 (541)
Q Consensus 394 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 471 (541)
.++...|++++|..+|++. ...| +..++..+..++...|+.++|...|+++++...+-...|+.++ ++...-
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~------~~~~~~ 235 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL------VDLNAD 235 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH------HHHHHH
Confidence 9999999999999999998 3345 4789999999999999999999999999987755445544433 334444
Q ss_pred HHHHHHhhhCC
Q 048358 472 SRMRKLIRSKS 482 (541)
Q Consensus 472 ~~~~~~m~~~~ 482 (541)
...++++.-++
T Consensus 236 ~~~~~~~~~~~ 246 (694)
T PRK15179 236 LAALRRLGVEG 246 (694)
T ss_pred HHHHHHcCccc
Confidence 55666654443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.4e-07 Score=54.37 Aligned_cols=33 Identities=36% Similarity=0.557 Sum_probs=25.5
Q ss_pred CCCCchhhHHHHHHHHHcCCChHHHHHHHhhcC
Q 048358 147 GLKSHSITENALLDLYGKCDELIEAHKVFEEMT 179 (541)
Q Consensus 147 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 179 (541)
|+.||..+|+.|+.+|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677778888888888888888888887777763
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.9e-05 Score=80.07 Aligned_cols=230 Identities=12% Similarity=0.121 Sum_probs=163.9
Q ss_pred ChHHHHHHHHHHHccCChHHHHHHHHHHHHhC-CC---ccHhHHHHHHHHHHhcCCHHHHHHHHHccCCC-C-hhHHHHH
Q 048358 248 DEISIVSVLPACAQLGSLELGEWIHMYCDKNH-LL---RRTVICNALIEMYIKCGCINQASQLFDQMVER-D-VVSWSTV 321 (541)
Q Consensus 248 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~l 321 (541)
+...|...|......++.++|.++.+++...- +. --...|.++++.-..-|.-+...++|+++.+- | ...|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 44456666666777777777777777666531 11 11346777777777778888888888888663 3 3578888
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCC
Q 048358 322 IGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGR 401 (541)
Q Consensus 322 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 401 (541)
...|.+.+.+++|.++|+.|.+. ..-....|...+..+.+.++-+.|..++.+..+...-........-.+..-.+.|+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 88999999999999999999875 24566788888888889888899999998888742111245555666677778899
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccC--CCCcc-hHHHHHHHHHhcCCHHHHHHHHH
Q 048358 402 LDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLE--PEDTG-NYVLLSNIYAKHGRWEDVSRMRK 476 (541)
Q Consensus 402 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~-~~~~l~~~~~~~g~~~~A~~~~~ 476 (541)
.+.+..+|+.. .-.| -...|+..+..-.++|+.+.+..+|++++.+. |.... .|...+..--+.|+-+.++.+-.
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKa 1695 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKA 1695 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 99999999887 3334 56788889999899999999999999998766 33333 44445554445577665555544
Q ss_pred Hh
Q 048358 477 LI 478 (541)
Q Consensus 477 ~m 478 (541)
+.
T Consensus 1696 rA 1697 (1710)
T KOG1070|consen 1696 RA 1697 (1710)
T ss_pred HH
Confidence 43
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.4e-05 Score=66.47 Aligned_cols=180 Identities=16% Similarity=0.231 Sum_probs=124.6
Q ss_pred cCCHHHHHHHHHccCC--------CChh-HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHhccCcH
Q 048358 297 CGCINQASQLFDQMVE--------RDVV-SWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGL-LSACAHTGFW 366 (541)
Q Consensus 297 ~g~~~~A~~~~~~~~~--------~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-~~~~~~~g~~ 366 (541)
..+.++..+++.++.. ++.. .|..++-+....|+.+.|..+++++...= |...-...+ .--+...|.+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhch
Confidence 4567777777776622 2222 34455556667788888888888877652 333322222 2234456888
Q ss_pred HHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 048358 367 NEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM--PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHL 444 (541)
Q Consensus 367 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 444 (541)
++|+++|+.+..+. |.|..++..-+...-..|+.-+|++-+.+. .+-.|...|..+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 88888888888753 666777777777777778877887776665 44457888888888888888888888888888
Q ss_pred hccCCCCcchHHHHHHHHHhcC---CHHHHHHHHHHhhh
Q 048358 445 LVLEPEDTGNYVLLSNIYAKHG---RWEDVSRMRKLIRS 480 (541)
Q Consensus 445 ~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~ 480 (541)
+=..|-++..+..+++.+.-.| +.+-|.+++.+..+
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 8888888888888888776655 45556667766544
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.2e-06 Score=67.60 Aligned_cols=97 Identities=23% Similarity=0.352 Sum_probs=70.4
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 048358 385 KIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIY 462 (541)
Q Consensus 385 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 462 (541)
+......+...+...|++++|.+.++.. ...| +...+..+...+...|++++|...++++++.+|+++..+..++.+|
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL 95 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3444556667777777777777777776 3334 4566666777777778888888888887777777777888888888
Q ss_pred HhcCCHHHHHHHHHHhhhC
Q 048358 463 AKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 463 ~~~g~~~~A~~~~~~m~~~ 481 (541)
...|++++|...+++..+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI 114 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 8888888888888776654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=7.5e-05 Score=69.80 Aligned_cols=120 Identities=17% Similarity=0.200 Sum_probs=100.1
Q ss_pred HHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHH
Q 048358 359 ACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPD-AKIWGSLLSSCRTYSNLEI 436 (541)
Q Consensus 359 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~ 436 (541)
.+...|.++.|+..++.+.+. .|.|+..+....+.+.+.++.++|.+.++++ ...|+ ...+..+..++.+.|++.+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence 445568999999999998874 4667777778888999999999999999988 66776 5667777888999999999
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048358 437 AVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 437 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 480 (541)
|+..+++....+|+++..|..|+.+|...|+..+|.....+...
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999988888777666544
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.4e-05 Score=64.95 Aligned_cols=199 Identities=15% Similarity=0.104 Sum_probs=149.0
Q ss_pred ccCChHHHHHHHHHHHHh---C-CCccHh-HHHHHHHHHHhcCCHHHHHHHHHccCC--CCh-hHHHHHHHHHHhcCChH
Q 048358 261 QLGSLELGEWIHMYCDKN---H-LLRRTV-ICNALIEMYIKCGCINQASQLFDQMVE--RDV-VSWSTVIGGLANHGKAH 332 (541)
Q Consensus 261 ~~~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~ 332 (541)
...+.++..+++..+... | ..++.. +|..++-+....|+.+.|..+++.+.. |+. .+-..-...+-..|+++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchh
Confidence 445778888888877642 3 334433 466677778889999999999998744 322 22111222345579999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 048358 333 KAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM 412 (541)
Q Consensus 333 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 412 (541)
+|+++|+.+.+.+ |.|..++-.=+...-..|+--+|++-+.+..+. +..|...|..+...|...|++++|.-.++++
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 9999999999987 667777776666667778888999999988874 5889999999999999999999999999998
Q ss_pred -CCCC-CHHHHHHHHHHHhh---cCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 048358 413 -PMKP-DAKIWGSLLSSCRT---YSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIY 462 (541)
Q Consensus 413 -~~~p-~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 462 (541)
-+.| ++..+..+...+.- ..+.+.+..+|++++++.|.+...+..+-.+.
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~ 235 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCG 235 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHH
Confidence 4566 55666677766433 34678899999999999997766655554443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.0017 Score=61.73 Aligned_cols=394 Identities=10% Similarity=0.113 Sum_probs=215.3
Q ss_pred CCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhh
Q 048358 75 PNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSIT 154 (541)
Q Consensus 75 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 154 (541)
-|..+|+.||+-+..+ .++++.+.++++...- +-.+..|..-++.-....+++....+|...+..-+ +...
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F------P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDL 88 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF------PSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDL 88 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC------CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhH
Confidence 4788999999987766 9999999999998753 55677888889999999999999999999887644 4556
Q ss_pred HHHHHHHHHc-CCChHHHH----HHHhhcCC------CChhhHHHHHHH---------HHhcCCHHHHHHHHhcCCCC--
Q 048358 155 ENALLDLYGK-CDELIEAH----KVFEEMTD------RDIVAWNNLISG---------YARLGQMKKARMLFDKMPYT-- 212 (541)
Q Consensus 155 ~~~l~~~~~~-~g~~~~A~----~~~~~~~~------~~~~~~~~l~~~---------~~~~~~~~~A~~~~~~~~~~-- 212 (541)
|...++--.+ .|+...+. +.|+-..+ .+-..|+..+.- |..+.+++...+++.++...
T Consensus 89 W~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm 168 (656)
T KOG1914|consen 89 WKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPM 168 (656)
T ss_pred HHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcc
Confidence 6555543322 23333322 22222211 233345544432 34455677778888887632
Q ss_pred -Cc-------chHHHHHHH-------HHhcCChHHHHHHHHHHHH--CCCCCChHH---------------HHHHHHHHH
Q 048358 213 -TI-------VSWTAMISG-------YTHIGSYAEALDVFRQMQM--VGIEPDEIS---------------IVSVLPACA 260 (541)
Q Consensus 213 -~~-------~~~~~l~~~-------~~~~g~~~~A~~~~~~m~~--~~~~p~~~~---------------~~~ll~~~~ 260 (541)
|+ ..|..=|.. --+...+..|.+++++... .|......+ |..+|. +-
T Consensus 169 ~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~-wE 247 (656)
T KOG1914|consen 169 HNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIK-WE 247 (656)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHH-HH
Confidence 11 122211111 1123456667777777654 232221111 211111 11
Q ss_pred ccCChH---------HHHHHHHHHHH-hCCCccHhH-----HHHHHHHHHhcCC-------HHHHHHHHHccCCC----C
Q 048358 261 QLGSLE---------LGEWIHMYCDK-NHLLRRTVI-----CNALIEMYIKCGC-------INQASQLFDQMVER----D 314 (541)
Q Consensus 261 ~~~~~~---------~a~~~~~~~~~-~~~~~~~~~-----~~~l~~~~~~~g~-------~~~A~~~~~~~~~~----~ 314 (541)
+.+.+. ...-++++... .+..|+.-. +....+.+...|+ .+++..+++..... +
T Consensus 248 ksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~ 327 (656)
T KOG1914|consen 248 KSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKEN 327 (656)
T ss_pred hcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 111110 11111221111 122222110 0011122333333 23344444433221 2
Q ss_pred hhHHHHHHHHHH---hcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHH
Q 048358 315 VVSWSTVIGGLA---NHGKAHKAIHLFHEMQRLK-VPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYG 390 (541)
Q Consensus 315 ~~~~~~l~~~~~---~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 390 (541)
..+|..+...-- ..+..+...+++.++...- +.| ..+|..+++.-.+..-++.|..+|.++.+......++.++.
T Consensus 328 ~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~ 406 (656)
T KOG1914|consen 328 KLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAA 406 (656)
T ss_pred HHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHH
Confidence 223333222111 1113455556666655432 233 34566777777777778888888888877533333666677
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHHHhcc--CCC-CcchHHHHHHHHHhc
Q 048358 391 CLVDLLGRAGRLDQALNIIEEM-PMKPDA-KIWGSLLSSCRTYSNLEIAVIAMEHLLVL--EPE-DTGNYVLLSNIYAKH 465 (541)
Q Consensus 391 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~-~~~~~~~l~~~~~~~ 465 (541)
+++..|+ .++.+-|.++|+-- ..-+|. ..-...+.-+...++-..+..+|++++.. .|+ ....|..++..-..-
T Consensus 407 A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~v 485 (656)
T KOG1914|consen 407 ALMEYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNV 485 (656)
T ss_pred HHHHHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhc
Confidence 7776665 46777888888764 333433 33445556667778888888888888765 222 346788888777778
Q ss_pred CCHHHHHHHHHHhhh
Q 048358 466 GRWEDVSRMRKLIRS 480 (541)
Q Consensus 466 g~~~~A~~~~~~m~~ 480 (541)
|+...+.++-+++..
T Consensus 486 GdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 486 GDLNSILKLEKRRFT 500 (656)
T ss_pred ccHHHHHHHHHHHHH
Confidence 888888777666543
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.0018 Score=60.18 Aligned_cols=193 Identities=12% Similarity=0.116 Sum_probs=116.8
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHcc--CCCChhHH-------HHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCH
Q 048358 284 TVICNALIEMYIKCGCINQASQLFDQM--VERDVVSW-------STVIGGLAN----HGKAHKAIHLFHEMQRLKVPPND 350 (541)
Q Consensus 284 ~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~-------~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~ 350 (541)
..++..++....+.++...|...+.-+ .+|+...- ..+-+..+. .-+...-+.+|......++...
T Consensus 298 i~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrq- 376 (549)
T PF07079_consen 298 IDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQ- 376 (549)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHH-
Confidence 346677777778888888887776654 33432211 111122221 1123333456666655442211
Q ss_pred HHHHHH---HHHHhccCc-HHHHHHHHHHhhhhcCCCCcHhHHHHHHH----HHHh---cCCHH---HHHHHHHhCCCCC
Q 048358 351 ITFIGL---LSACAHTGF-WNEGLMYFDSMKRDHHIEHKIEHYGCLVD----LLGR---AGRLD---QALNIIEEMPMKP 416 (541)
Q Consensus 351 ~~~~~l---~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~---~g~~~---~A~~~~~~~~~~p 416 (541)
.....| ..-+.+.|. -++|+.+++.+.+- -+-|..+-|.+.. .|.. ...+. +-..+.++.++.|
T Consensus 377 QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~ 454 (549)
T PF07079_consen 377 QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTP 454 (549)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 111122 233455555 78899999988863 2334443333221 1211 11112 2233445556655
Q ss_pred ----CHHHHHHHHHH--HhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048358 417 ----DAKIWGSLLSS--CRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 417 ----~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 480 (541)
+...-+.|..| +..+|++.++.-.-..+.++.| ++.+|..++-++....++++|..++..++-
T Consensus 455 i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 455 ITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred ccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 45567777777 6789999999999999999999 799999999999999999999999998764
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00022 Score=73.76 Aligned_cols=151 Identities=7% Similarity=0.043 Sum_probs=85.4
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHH
Q 048358 215 VSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMY 294 (541)
Q Consensus 215 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 294 (541)
.++..++.+|-+.|+.++|..+++++++.. +-|....+.+...++.. ++++|.+++..++.. |
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~ 179 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------F 179 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------H
Confidence 356667777778888888888888877765 44555666666666666 666666666555433 4
Q ss_pred HhcCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 048358 295 IKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRL-KVPPNDITFIGLLSACAHTGFWNEGLMYF 373 (541)
Q Consensus 295 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 373 (541)
...+++..+..++.++..-++.- ++.-..+.+.+... |..--..++..+-..|...+++++++.++
T Consensus 180 i~~kq~~~~~e~W~k~~~~~~~d-------------~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iL 246 (906)
T PRK14720 180 IKKKQYVGIEEIWSKLVHYNSDD-------------FDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYIL 246 (906)
T ss_pred HhhhcchHHHHHHHHHHhcCccc-------------chHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 44556666666666654433321 12222222222222 22223344555556666677777777777
Q ss_pred HHhhhhcCCCCcHhHHHHHHHHHH
Q 048358 374 DSMKRDHHIEHKIEHYGCLVDLLG 397 (541)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~l~~~~~ 397 (541)
+.+.+. -+.|.....-++..|.
T Consensus 247 K~iL~~--~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 247 KKILEH--DNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhc--CCcchhhHHHHHHHHH
Confidence 777653 2334444455555554
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.3e-05 Score=64.65 Aligned_cols=116 Identities=12% Similarity=0.108 Sum_probs=89.2
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 048358 337 LFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMK 415 (541)
Q Consensus 337 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 415 (541)
.|++..... +.+......+...+...|++++|.+.|+.+.... +.+...+..+...+...|++++|...++.. ...
T Consensus 5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 455555543 3344556667777888899999999998887742 557777888889999999999999988887 445
Q ss_pred C-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchH
Q 048358 416 P-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNY 455 (541)
Q Consensus 416 p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 455 (541)
| +...+..+...+...|++++|...++++++..|++....
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 5 567777778888899999999999999999988876533
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.38 E-value=1e-05 Score=76.28 Aligned_cols=124 Identities=14% Similarity=0.179 Sum_probs=101.3
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhh
Q 048358 353 FIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRT 430 (541)
Q Consensus 353 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 430 (541)
...|+..+...++++.|+.+|+++.+. .|+. ...++..+...++-.+|.+++++. ...| +...+..-...|.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 345566667778899999999998874 2554 455788888888888898888877 3344 55666666667899
Q ss_pred cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 431 YSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 431 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
.++++.|+.+.+++.+..|.+..+|..|+.+|.+.|+++.|+..++.++..
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 999999999999999999999999999999999999999999999998743
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00019 Score=74.27 Aligned_cols=106 Identities=8% Similarity=0.071 Sum_probs=55.0
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHH
Q 048358 224 YTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQA 303 (541)
Q Consensus 224 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 303 (541)
.....++.-+..+...|.+. .-+...+..+..+|.+.|+.+++..+++++.+.. +.|+.+.|.+...|... ++++|
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred cccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHH
Confidence 33334443344444444432 2233345555556666666666666666666655 44555566666666555 66666
Q ss_pred HHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 048358 304 SQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRL 344 (541)
Q Consensus 304 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 344 (541)
.+++.+.+ ..+...+++.++.++|.++...
T Consensus 169 ~~m~~KAV-----------~~~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 169 ITYLKKAI-----------YRFIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHH-----------HHHHhhhcchHHHHHHHHHHhc
Confidence 65554322 2244445555555555555554
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.6e-06 Score=69.09 Aligned_cols=108 Identities=8% Similarity=0.005 Sum_probs=92.4
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccC
Q 048358 407 NIIEEMPMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKT 486 (541)
Q Consensus 407 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 486 (541)
..+..+.+.-+......+...+...|++++|..+|+-+...+|.+...|..|+-++...|++++|+..|.....
T Consensus 24 ~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~------ 97 (157)
T PRK15363 24 RMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ------ 97 (157)
T ss_pred HHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh------
Confidence 33444433334555666677788999999999999999999999999999999999999999999999998754
Q ss_pred CceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCcccccccCC
Q 048358 487 PGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMYEDIG 540 (541)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~i~ 540 (541)
++|+++.++..++..+..+|+.+.|.+.++.+|.
T Consensus 98 --------------------L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 98 --------------------IKIDAPQAPWAAAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred --------------------cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5799999999999999999999999998887763
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.0043 Score=62.67 Aligned_cols=408 Identities=13% Similarity=0.065 Sum_probs=215.3
Q ss_pred HcCCChHHHHHHHhcCCC-CCcchHHHHHHHH--HcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCc
Q 048358 57 NSGGDLAYASLLFKQVKE-PNVFLYNAMIRAY--TNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCP 133 (541)
Q Consensus 57 ~~~~~~~~A~~~~~~~~~-~~~~~~~~ll~~~--~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 133 (541)
...+++..|++..+++.+ .....|..++.++ .+.|+.++|..+++.....+ ..|..|...+-.+|.+.+..
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~------~~D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLK------GTDDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCC------CCchHHHHHHHHHHHHHhhh
Confidence 345777778877777664 2223455555554 47788888887777766554 34677777777777888888
Q ss_pred hHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHH----HHHHHhhcCCCChhhHHHHHHHHHhcC----------CH
Q 048358 134 SLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIE----AHKVFEEMTDRDIVAWNNLISGYARLG----------QM 199 (541)
Q Consensus 134 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~l~~~~~~~~----------~~ 199 (541)
++|..+|+...... |+......+..+|.|.+++.+ |.+++...++ +...+-+++..+.+.- -.
T Consensus 94 d~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk-~~yyfWsV~Slilqs~~~~~~~~~~i~l 170 (932)
T KOG2053|consen 94 DEAVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPK-RAYYFWSVISLILQSIFSENELLDPILL 170 (932)
T ss_pred hHHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-ccchHHHHHHHHHHhccCCcccccchhH
Confidence 88888888877653 446666667777777776654 4555554433 3333334444443311 11
Q ss_pred HHHHHHHhcCCCCC-c-ch---HHHHHHHHHhcCChHHHHHHHHH-HHHCCCCCChHHHHHHHHHHHccCChHHHHHHHH
Q 048358 200 KKARMLFDKMPYTT-I-VS---WTAMISGYTHIGSYAEALDVFRQ-MQMVGIEPDEISIVSVLPACAQLGSLELGEWIHM 273 (541)
Q Consensus 200 ~~A~~~~~~~~~~~-~-~~---~~~l~~~~~~~g~~~~A~~~~~~-m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 273 (541)
.-|.+.++.+.+.+ . .+ ...-...+-..|.+++|++++.. ..+.-...+...-+.-+..+...+++.+..++..
T Consensus 171 ~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~ 250 (932)
T KOG2053|consen 171 ALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSS 250 (932)
T ss_pred HHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHH
Confidence 23444555444332 1 11 11112233456677777777733 3332223333333455566667777777777777
Q ss_pred HHHHhCCCccHhHHHHHHHHHH----------------hcCCHHHHHHHHHccCCC-ChhHHHHHHHHHH---hcCChHH
Q 048358 274 YCDKNHLLRRTVICNALIEMYI----------------KCGCINQASQLFDQMVER-DVVSWSTVIGGLA---NHGKAHK 333 (541)
Q Consensus 274 ~~~~~~~~~~~~~~~~l~~~~~----------------~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~---~~~~~~~ 333 (541)
++...|... |...++.+. ..+..+...+..++.... .-..|-+-+.++. .-|+.++
T Consensus 251 ~Ll~k~~Dd----y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee 326 (932)
T KOG2053|consen 251 RLLEKGNDD----YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEE 326 (932)
T ss_pred HHHHhCCcc----hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHH
Confidence 776665332 222222111 111222222222222111 1112222222222 2355555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHh-------HHHHHHHHHHhcCC-----
Q 048358 334 AIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIE-------HYGCLVDLLGRAGR----- 401 (541)
Q Consensus 334 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~----- 401 (541)
+.-.|-+ +-|-.| .|..=+..|...=..+.-..++...... .++.. -+...+..-.-.|.
T Consensus 327 ~~~~y~~--kfg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~---~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ 398 (932)
T KOG2053|consen 327 MLSYYFK--KFGDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLA---DDDSSGDEKVLQQHLCVLLLLRLLGLYEKLP 398 (932)
T ss_pred HHHHHHH--HhCCCc---HhHhhHHHhhccCCHHHHHHHHHHhhcc---CCcchhhHHHHHHHHHHHHHHHHhhccccCC
Confidence 4433322 112122 2222233333333444445555554432 12211 02222222223332
Q ss_pred HHHHHHHHHhC------C------CCCCH---------HHHHHHHHHHhhcCCHH---HHHHHHHHHhccCCCCcchHHH
Q 048358 402 LDQALNIIEEM------P------MKPDA---------KIWGSLLSSCRTYSNLE---IAVIAMEHLLVLEPEDTGNYVL 457 (541)
Q Consensus 402 ~~~A~~~~~~~------~------~~p~~---------~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~ 457 (541)
.+.-..++.+. + .-|+. .+.+.|+..+.+.++.. +|+-+++..+..+|.|..+-..
T Consensus 399 ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLl 478 (932)
T KOG2053|consen 399 ADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLL 478 (932)
T ss_pred hHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHH
Confidence 22223333222 1 12322 23456677788887754 6777888888899999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCcc
Q 048358 458 LSNIYAKHGRWEDVSRMRKLIRSKSMKK 485 (541)
Q Consensus 458 l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 485 (541)
++++|.-.|-+..|.++|+.+--+++..
T Consensus 479 LiriY~~lGa~p~a~~~y~tLdIK~IQ~ 506 (932)
T KOG2053|consen 479 LIRIYSYLGAFPDAYELYKTLDIKNIQT 506 (932)
T ss_pred HHHHHHHhcCChhHHHHHHhcchHHhhh
Confidence 9999999999999999999987666543
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.4e-05 Score=73.80 Aligned_cols=128 Identities=15% Similarity=0.124 Sum_probs=105.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc
Q 048358 286 ICNALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGF 365 (541)
Q Consensus 286 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 365 (541)
....|+..+...++++.|..+|+++.+.++.....++..+...++-.+|.+++++..... +-+......-...+.+.++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 445567777778899999999999988877778888888888889999999999988764 4455666666777889999
Q ss_pred HHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 048358 366 WNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKP 416 (541)
Q Consensus 366 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 416 (541)
++.|+.+.+++... .|.+..+|..|..+|...|+++.|+..++.++..|
T Consensus 250 ~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 250 YELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 99999999999873 45667799999999999999999999999987554
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.0035 Score=59.61 Aligned_cols=423 Identities=11% Similarity=0.090 Sum_probs=256.1
Q ss_pred CCchhHHHHHHHHHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCccc
Q 048358 43 SQSNFLVTKMIDVCNSGGDLAYASLLFKQVKE---PNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFT 119 (541)
Q Consensus 43 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~ 119 (541)
+-|..+|+.||+-+... ..+++++.++++.. .....|..-|..-.+..+++....+|.+.+.. .-+...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk-------vLnlDL 88 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK-------VLNLDL 88 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-------HhhHhH
Confidence 45889999999976665 99999999999876 35668999999999999999999999998876 456667
Q ss_pred HHHHHHHHhcc-CCchH----HHHHHHHHH-HhCCCCc-hhhHHHHHHH---------HHcCCChHHHHHHHhhcCC-C-
Q 048358 120 LPFVIKSCAGL-LCPSL----GKQIHAHVC-KFGLKSH-SITENALLDL---------YGKCDELIEAHKVFEEMTD-R- 181 (541)
Q Consensus 120 ~~~ll~~~~~~-~~~~~----a~~~~~~~~-~~g~~~~-~~~~~~l~~~---------~~~~g~~~~A~~~~~~~~~-~- 181 (541)
|..-+..-.+. +.... ..+.|+-.+ +.|+.+- ...|+..+.. |....+++...+++.++.. |
T Consensus 89 W~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm 168 (656)
T KOG1914|consen 89 WKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPM 168 (656)
T ss_pred HHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcc
Confidence 76666654432 33333 233344333 3454433 2345544433 3344567778888888875 2
Q ss_pred -Ch-------hhHHHHHHH-------HHhcCCHHHHHHHHhcCC--------------CCCc-------chHHHHHHHHH
Q 048358 182 -DI-------VAWNNLISG-------YARLGQMKKARMLFDKMP--------------YTTI-------VSWTAMISGYT 225 (541)
Q Consensus 182 -~~-------~~~~~l~~~-------~~~~~~~~~A~~~~~~~~--------------~~~~-------~~~~~l~~~~~ 225 (541)
|. .+|..=|+. --+...+..|.++++++. ++.+ ..|-.+|.--.
T Consensus 169 ~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEk 248 (656)
T KOG1914|consen 169 HNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEK 248 (656)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHh
Confidence 21 122111111 111334455666555542 0110 12444443222
Q ss_pred hcCC--------hHHHHHHHHH-HHHCCCCCChHHHHH-----HHHHHHccCCh-------HHHHHHHHHHHHhCCCccH
Q 048358 226 HIGS--------YAEALDVFRQ-MQMVGIEPDEISIVS-----VLPACAQLGSL-------ELGEWIHMYCDKNHLLRRT 284 (541)
Q Consensus 226 ~~g~--------~~~A~~~~~~-m~~~~~~p~~~~~~~-----ll~~~~~~~~~-------~~a~~~~~~~~~~~~~~~~ 284 (541)
..+- .....-.+++ |.-.+..|+.....+ .-..+...|+. +++..+++.....-...+.
T Consensus 249 sNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~ 328 (656)
T KOG1914|consen 249 SNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENK 328 (656)
T ss_pred cCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 2111 0111122222 122234444322111 11123333443 3455555554443333344
Q ss_pred hHHHHHHHHHHhcC---CHHHHHHHHHccCC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHH
Q 048358 285 VICNALIEMYIKCG---CINQASQLFDQMVE----RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPP-NDITFIGL 356 (541)
Q Consensus 285 ~~~~~l~~~~~~~g---~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l 356 (541)
.+|..+.+.-...- ..+.....++++.. .-..+|...++.-.+..-...|..+|.++.+.+..+ .....+++
T Consensus 329 ~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~ 408 (656)
T KOG1914|consen 329 LLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAAL 408 (656)
T ss_pred HHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHH
Confidence 44444433222222 24555555555522 234578888888888888999999999999988777 66677888
Q ss_pred HHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHhhc
Q 048358 357 LSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM---PMKPD--AKIWGSLLSSCRTY 431 (541)
Q Consensus 357 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~l~~~~~~~ 431 (541)
+.-+|. ++.+-|..+|+.-.+.+ ..++.--...++.+...++-..|..+|++. ++.|+ ...|..++.--..-
T Consensus 409 mEy~cs-kD~~~AfrIFeLGLkkf--~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~v 485 (656)
T KOG1914|consen 409 MEYYCS-KDKETAFRIFELGLKKF--GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNV 485 (656)
T ss_pred HHHHhc-CChhHHHHHHHHHHHhc--CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhc
Confidence 887775 78999999999988865 344444577888899999999999999998 23443 58899999999999
Q ss_pred CCHHHHHHHHHHHhccCCCC----cchHHHHHHHHHhcCCHHHHHHHHH
Q 048358 432 SNLEIAVIAMEHLLVLEPED----TGNYVLLSNIYAKHGRWEDVSRMRK 476 (541)
Q Consensus 432 ~~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~ 476 (541)
|+...+..+-++....-|.+ ...-..+++-|.-.+.+..-..-++
T Consensus 486 GdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk 534 (656)
T KOG1914|consen 486 GDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELK 534 (656)
T ss_pred ccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHH
Confidence 99999999988887665521 1233445555666665544443333
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=7.1e-06 Score=71.69 Aligned_cols=98 Identities=16% Similarity=0.181 Sum_probs=72.7
Q ss_pred HHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHH
Q 048358 359 ACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPD-AKIWGSLLSSCRTYSNLEI 436 (541)
Q Consensus 359 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~ 436 (541)
-..+.++|.+|+..|.+..+- .|-|...|..-..+|.+.|.++.|++-.+.. .+.|. ..+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 355668888888888888763 3556666777777888888888888777766 66674 4778888888888888888
Q ss_pred HHHHHHHHhccCCCCcchHHHH
Q 048358 437 AVIAMEHLLVLEPEDTGNYVLL 458 (541)
Q Consensus 437 a~~~~~~~~~~~~~~~~~~~~l 458 (541)
|++.|+++++++|++......|
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHH
Confidence 8888888888888876444443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=2e-05 Score=74.66 Aligned_cols=84 Identities=12% Similarity=0.154 Sum_probs=39.3
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHH
Q 048358 396 LGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSR 473 (541)
Q Consensus 396 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 473 (541)
+...|++++|++.|+++ ...| +...|..+..+|...|++++|+..++++++++|.++..|..++.+|...|++++|..
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 33444444444444444 2223 233444444444444555555555555555555444455555555555555555555
Q ss_pred HHHHhh
Q 048358 474 MRKLIR 479 (541)
Q Consensus 474 ~~~~m~ 479 (541)
.+++..
T Consensus 92 ~~~~al 97 (356)
T PLN03088 92 ALEKGA 97 (356)
T ss_pred HHHHHH
Confidence 544443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.9e-06 Score=58.25 Aligned_cols=53 Identities=17% Similarity=0.370 Sum_probs=48.0
Q ss_pred hhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 429 RTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 429 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
...|++++|++.|+++++.+|.+..++..++.+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999999999999999988764
|
... |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.21 E-value=7.6e-05 Score=60.85 Aligned_cols=114 Identities=15% Similarity=0.096 Sum_probs=61.4
Q ss_pred cCcHHHHHHHHHHhhhhcCCCC-cHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHhhcCCHHH
Q 048358 363 TGFWNEGLMYFDSMKRDHHIEH-KIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPDA----KIWGSLLSSCRTYSNLEI 436 (541)
Q Consensus 363 ~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~ 436 (541)
.++...+...++.+.+.++-.+ .......+...+...|++++|...|+.. ...|+. .....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4566666666666665431111 1222333445566666666666666665 211322 233344555666667776
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHH
Q 048358 437 AVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKL 477 (541)
Q Consensus 437 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 477 (541)
|+..++.. ...+-.+..+...+++|.+.|++++|...|+.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666542 22233345666667777777777777766654
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00039 Score=65.16 Aligned_cols=143 Identities=15% Similarity=0.088 Sum_probs=104.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhc
Q 048358 320 TVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRA 399 (541)
Q Consensus 320 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 399 (541)
-..-.+...|++++|+..++.++..- |-|..........+.+.++.++|.+.++++.... |.....+-.+..+|.+.
T Consensus 311 G~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~ 387 (484)
T COG4783 311 GRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKG 387 (484)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhc
Confidence 33444556788888998888887763 4444444555677888899999999999888742 33356667788888999
Q ss_pred CCHHHHHHHHHhC--CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHH
Q 048358 400 GRLDQALNIIEEM--PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKL 477 (541)
Q Consensus 400 g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 477 (541)
|++.+|+.++++. ..+-|+..|..|..+|...|+..++.... +..|.-.|+|++|...+..
T Consensus 388 g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~~~l~~ 450 (484)
T COG4783 388 GKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAIIFLMR 450 (484)
T ss_pred CChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHHHHHHH
Confidence 9999999888887 33346788888888888888877776544 4457777888888877777
Q ss_pred hhhCC
Q 048358 478 IRSKS 482 (541)
Q Consensus 478 m~~~~ 482 (541)
..+..
T Consensus 451 A~~~~ 455 (484)
T COG4783 451 ASQQV 455 (484)
T ss_pred HHHhc
Confidence 76653
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.8e-06 Score=61.11 Aligned_cols=78 Identities=19% Similarity=0.326 Sum_probs=45.7
Q ss_pred cCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 048358 399 AGRLDQALNIIEEM-PMKP---DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRM 474 (541)
Q Consensus 399 ~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 474 (541)
.|+++.|+.+++++ ...| +...+..+..++.+.|++++|+.++++ .+.+|.++.....++.++.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35566666666665 2222 334444456666666666777666666 555555555566667777777777777766
Q ss_pred HHH
Q 048358 475 RKL 477 (541)
Q Consensus 475 ~~~ 477 (541)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 654
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00018 Score=58.67 Aligned_cols=124 Identities=16% Similarity=0.164 Sum_probs=79.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCc--HhHHHHH
Q 048358 318 WSTVIGGLANHGKAHKAIHLFHEMQRLKVPPN---DITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHK--IEHYGCL 392 (541)
Q Consensus 318 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l 392 (541)
|..++..+ ..++...+...++.+.... +.+ ......+...+...|++++|...|+.+.... ..|. ......+
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHH
Confidence 34444444 3677777777777777753 333 2233345566777788888888888887642 1222 2234456
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 048358 393 VDLLGRAGRLDQALNIIEEMPMK-PDAKIWGSLLSSCRTYSNLEIAVIAMEHL 444 (541)
Q Consensus 393 ~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 444 (541)
...+...|++++|+..++...-. .....+......+.+.|++++|+..|+++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77777888888888888776322 23455556666788888888888888765
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.12 E-value=4.4e-05 Score=59.94 Aligned_cols=93 Identities=14% Similarity=0.084 Sum_probs=50.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC---cchHHHHHH
Q 048358 389 YGCLVDLLGRAGRLDQALNIIEEM-PMKPD----AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPED---TGNYVLLSN 460 (541)
Q Consensus 389 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~ 460 (541)
+..++..+.+.|++++|.+.|+.+ ...|+ ...+..+..++.+.|+++.|...++++....|.+ +.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 344455555555555555555554 22222 2334445555566666666666666666555443 334555666
Q ss_pred HHHhcCCHHHHHHHHHHhhhC
Q 048358 461 IYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 461 ~~~~~g~~~~A~~~~~~m~~~ 481 (541)
++.+.|++++|...++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 666666666666666665543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.12 E-value=4e-05 Score=57.20 Aligned_cols=93 Identities=25% Similarity=0.322 Sum_probs=74.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 048358 389 YGCLVDLLGRAGRLDQALNIIEEM-PMKPD-AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHG 466 (541)
Q Consensus 389 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 466 (541)
+..+...+...|++++|...+++. ...|+ ...+..+...+...|++++|...+++..+..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 456677777888888888888876 44443 4666777777888899999999999998888888888889999999999
Q ss_pred CHHHHHHHHHHhhhC
Q 048358 467 RWEDVSRMRKLIRSK 481 (541)
Q Consensus 467 ~~~~A~~~~~~m~~~ 481 (541)
++++|...++.....
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999888887654
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.08 E-value=7.5e-06 Score=47.95 Aligned_cols=34 Identities=41% Similarity=0.781 Sum_probs=30.4
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 048358 215 VSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPD 248 (541)
Q Consensus 215 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 248 (541)
.+||.++.+|++.|++++|.++|++|.+.|++||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3789999999999999999999999999998887
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.08 E-value=8.6e-05 Score=58.27 Aligned_cols=105 Identities=10% Similarity=0.087 Sum_probs=70.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCC-cHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHH
Q 048358 352 TFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEH-KIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPD----AKIWGSLL 425 (541)
Q Consensus 352 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~ 425 (541)
++..++..+...|++++|...|..+...+.-.+ ....+..+..++.+.|++++|.+.|+.+ ...|+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 455566666777777777777777765421111 1334556777777778888887777776 32333 45566677
Q ss_pred HHHhhcCCHHHHHHHHHHHhccCCCCcchHH
Q 048358 426 SSCRTYSNLEIAVIAMEHLLVLEPEDTGNYV 456 (541)
Q Consensus 426 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 456 (541)
.++.+.|+.++|...++++++..|+++.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 7778888888888888888888887765443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00012 Score=61.82 Aligned_cols=82 Identities=20% Similarity=0.138 Sum_probs=63.4
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 048358 386 IEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPD----AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSN 460 (541)
Q Consensus 386 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 460 (541)
...+..+...+...|++++|...|++. ...|+ ...+..+...+.+.|++++|+..++++++..|.++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 445666777777788888888887776 32232 3567777788888999999999999999988888888888888
Q ss_pred HHHhcCC
Q 048358 461 IYAKHGR 467 (541)
Q Consensus 461 ~~~~~g~ 467 (541)
++...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 8888776
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.2e-05 Score=55.99 Aligned_cols=65 Identities=22% Similarity=0.264 Sum_probs=59.2
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC-CHHHHHHHHHHhhhC
Q 048358 417 DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHG-RWEDVSRMRKLIRSK 481 (541)
Q Consensus 417 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~ 481 (541)
+..+|..+...+...|++++|+..|+++++.+|.++.+|..++.+|...| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 45778888899999999999999999999999999999999999999999 799999999987653
|
... |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.06 E-value=8.3e-06 Score=47.36 Aligned_cols=33 Identities=24% Similarity=0.549 Sum_probs=27.7
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 048358 215 VSWTAMISGYTHIGSYAEALDVFRQMQMVGIEP 247 (541)
Q Consensus 215 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 247 (541)
.+|+.++.+|.+.|+++.|..+|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=5.3e-05 Score=66.36 Aligned_cols=103 Identities=18% Similarity=0.259 Sum_probs=86.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCC
Q 048358 322 IGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGR 401 (541)
Q Consensus 322 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 401 (541)
..-+.+.++|.+|+..|.+.++.. +-|.+-|..=..+|++.|.++.|++-.+....-. +....+|..|..+|...|+
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD--p~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID--PHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHccCc
Confidence 345678899999999999999975 6677778888999999999999999988888632 4457889999999999999
Q ss_pred HHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 048358 402 LDQALNIIEEM-PMKPDAKIWGSLLSS 427 (541)
Q Consensus 402 ~~~A~~~~~~~-~~~p~~~~~~~l~~~ 427 (541)
+++|++.|++. .+.|+..+|..=+..
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHHHHHH
Confidence 99999999987 888987777655554
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.022 Score=57.86 Aligned_cols=181 Identities=10% Similarity=0.052 Sum_probs=132.7
Q ss_pred HHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCC
Q 048358 56 CNSGGDLAYASLLFKQVKE---PNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLC 132 (541)
Q Consensus 56 ~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 132 (541)
+.|.|+.++|..+++.... .|..+...+-.+|...++.++|..+|+..... -|+..-...+..+|.+.++
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~-------~P~eell~~lFmayvR~~~ 125 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK-------YPSEELLYHLFMAYVREKS 125 (932)
T ss_pred HHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-------CCcHHHHHHHHHHHHHHHH
Confidence 4788999999999988764 57778888899999999999999999999887 5778888888889999999
Q ss_pred chHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCC----------hHHHHHHHhhcCCCC-----hhhHHHHHHHHHhcC
Q 048358 133 PSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDE----------LIEAHKVFEEMTDRD-----IVAWNNLISGYARLG 197 (541)
Q Consensus 133 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~-----~~~~~~l~~~~~~~~ 197 (541)
+..-.++--++.+. ++-+...+-++++.+...-. ..-|.+.++.+.+.+ ..-.......+...|
T Consensus 126 yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~ 204 (932)
T KOG2053|consen 126 YKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQG 204 (932)
T ss_pred HHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcc
Confidence 88777776666664 45566666677777665421 234556666665533 111222334556688
Q ss_pred CHHHHHHHHhc-----CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048358 198 QMKKARMLFDK-----MPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVG 244 (541)
Q Consensus 198 ~~~~A~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 244 (541)
.+++|.+++.. ....+...-+.-+..+...+++.+..++-.++...|
T Consensus 205 k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 205 KYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred cHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 89999999832 233344555566778888999999999999988875
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.9e-05 Score=54.15 Aligned_cols=58 Identities=19% Similarity=0.318 Sum_probs=50.6
Q ss_pred HHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 424 LLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 424 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
+...+...|++++|+..|+++++..|.++..+..++.++.+.|++++|..+++++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4556788999999999999999999999999999999999999999999999988764
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00012 Score=64.69 Aligned_cols=107 Identities=15% Similarity=0.134 Sum_probs=88.9
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhh---cCCHHHHHHHHHHHhccCCCCcchHHH
Q 048358 383 EHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRT---YSNLEIAVIAMEHLLVLEPEDTGNYVL 457 (541)
Q Consensus 383 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~ 457 (541)
|.|...|-.|...|.+.|+++.|..-|.+. .+.| +...+..+..++.. .....++..+++++++.+|.|+.+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 678889999999999999999999999887 4444 56666677766433 234678999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCccCCce
Q 048358 458 LSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGC 489 (541)
Q Consensus 458 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 489 (541)
|+..+...|++.+|...++.|.+.....+|..
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr 264 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPRR 264 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCchH
Confidence 99999999999999999999998866544443
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.3e-05 Score=58.58 Aligned_cols=95 Identities=16% Similarity=0.205 Sum_probs=81.8
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEE
Q 048358 420 IWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQ 499 (541)
Q Consensus 420 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 499 (541)
++..+...+...|++++|...++++.+..|.++..+..++.++...|++++|.+.++.....
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------------------ 63 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL------------------ 63 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------------------
Confidence 35566777888999999999999999999998889999999999999999999999987653
Q ss_pred EEEeCCCCCCChhHHHHHHHHHHHHHhcccCCcccccccCC
Q 048358 500 EFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMYEDIG 540 (541)
Q Consensus 500 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~i~ 540 (541)
.|.+...+..++.++..+|+.++|.+.+.+.++
T Consensus 64 --------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 64 --------DPDNAKAYYNLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred --------CCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 355557889999999999999999888776653
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00042 Score=63.34 Aligned_cols=133 Identities=15% Similarity=0.188 Sum_probs=102.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHH
Q 048358 316 VSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSA-CAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVD 394 (541)
Q Consensus 316 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 394 (541)
.+|-.++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. ++.+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 467788888888888999999999998654 3445555555444 33357788899999999985 4677888999999
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC
Q 048358 395 LLGRAGRLDQALNIIEEM-PMKPDA----KIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPED 451 (541)
Q Consensus 395 ~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (541)
.+.+.|+.+.|..+|++. ..-|.. ..|...+.--.+.|+.+.+..+.+++.+.-|.+
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 999999999999999987 323333 589999999899999999999999999887774
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.6e-05 Score=46.48 Aligned_cols=34 Identities=29% Similarity=0.429 Sum_probs=28.1
Q ss_pred chHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCC
Q 048358 78 FLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPD 116 (541)
Q Consensus 78 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~ 116 (541)
.+||.++.+|++.|++++|.++|++|.+.|+ +||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~-----~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGI-----EPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-----CCC
Confidence 3688888888888888888888888888887 776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00017 Score=68.48 Aligned_cols=106 Identities=15% Similarity=0.104 Sum_probs=72.2
Q ss_pred HHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHH
Q 048358 358 SACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLE 435 (541)
Q Consensus 358 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~ 435 (541)
..+...|+++.|++.|+++.+. -+.+...|..+..+|.+.|++++|+..++++ .+.| +...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 4445567777777777777663 2445566667777777777777777777776 4445 4566666777777778888
Q ss_pred HHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 048358 436 IAVIAMEHLLVLEPEDTGNYVLLSNIYAKH 465 (541)
Q Consensus 436 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 465 (541)
+|+..|+++++++|.++.....+..+..+.
T Consensus 88 eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 888888888877777777666665554443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00014 Score=61.05 Aligned_cols=113 Identities=12% Similarity=-0.080 Sum_probs=84.5
Q ss_pred HHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHhhcCCHHHHHHH
Q 048358 366 WNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPD----AKIWGSLLSSCRTYSNLEIAVIA 440 (541)
Q Consensus 366 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~ 440 (541)
+..+...+..+.+..+.......|..+...+...|++++|...|++. .+.|+ ..++..+...+...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 33444444444332233334566778888888899999999998887 33332 35788888889999999999999
Q ss_pred HHHHhccCCCCcchHHHHHHHHH-------hcCCHHHHHHHHHHh
Q 048358 441 MEHLLVLEPEDTGNYVLLSNIYA-------KHGRWEDVSRMRKLI 478 (541)
Q Consensus 441 ~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~~~A~~~~~~m 478 (541)
++++++..|.....+..++.++. ..|++++|...+++.
T Consensus 95 ~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 95 YFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 99999999998888888888888 888888776666554
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0007 Score=67.15 Aligned_cols=139 Identities=13% Similarity=0.018 Sum_probs=71.5
Q ss_pred CChhHHHHHHHHHHh--c---CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc--------CcHHHHHHHHHHhhhh
Q 048358 313 RDVVSWSTVIGGLAN--H---GKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHT--------GFWNEGLMYFDSMKRD 379 (541)
Q Consensus 313 ~~~~~~~~l~~~~~~--~---~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--------g~~~~a~~~~~~~~~~ 379 (541)
.|...|...+.+... . ++...|..+|++..+.. |-+...+..+..++... .++..+.+........
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 466667666665433 2 22667777888777764 33334444433333211 1122233333332221
Q ss_pred cCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCc
Q 048358 380 HHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDT 452 (541)
Q Consensus 380 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 452 (541)
...+.+...|..+.-.....|++++|...+++. ...|+...|..+...+...|+.++|.+.++++..++|.++
T Consensus 414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 112233344555544455556666666666655 4455555566666666666666666666666666666655
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.88 E-value=2.4e-05 Score=45.35 Aligned_cols=31 Identities=26% Similarity=0.360 Sum_probs=23.2
Q ss_pred chHHHHHHHHHcCCChhHHHHHHHHhhhCCC
Q 048358 78 FLYNAMIRAYTNNHLYGLAINLYKQMLRDPR 108 (541)
Q Consensus 78 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~ 108 (541)
.+|+.++.+|++.|+++.|.++|+.|.+.|+
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv 32 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGV 32 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 4677777777777777777777777777776
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00092 Score=61.27 Aligned_cols=154 Identities=13% Similarity=0.065 Sum_probs=107.5
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHhccCcHHHHHHHHHHhhhhcCCCCcHhH------------
Q 048358 323 GGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLS--ACAHTGFWNEGLMYFDSMKRDHHIEHKIEH------------ 388 (541)
Q Consensus 323 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~------------ 388 (541)
.++...|++++|...-....+.. ..+. +...++ ++.-.++.+.+...|++.++- .|+...
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld-~~n~--~al~vrg~~~yy~~~~~ka~~hf~qal~l---dpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD-ATNA--EALYVRGLCLYYNDNADKAINHFQQALRL---DPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc-cchh--HHHHhcccccccccchHHHHHHHhhhhcc---ChhhhhHHhHhhhHHHHH
Confidence 35566788888887766666543 2222 223333 344567788888888877652 344322
Q ss_pred -HHHHHHHHHhcCCHHHHHHHHHhC-CCC-----CCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHH
Q 048358 389 -YGCLVDLLGRAGRLDQALNIIEEM-PMK-----PDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNI 461 (541)
Q Consensus 389 -~~~l~~~~~~~g~~~~A~~~~~~~-~~~-----p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 461 (541)
+..=.+-..+.|.+.+|.+.|.+. .+. |+...|.....+..+.|+.++|+...+++++++|.-...|..-+++
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 111223346788899999988876 444 4556677777778889999999999999999998888888888888
Q ss_pred HHhcCCHHHHHHHHHHhhhCC
Q 048358 462 YAKHGRWEDVSRMRKLIRSKS 482 (541)
Q Consensus 462 ~~~~g~~~~A~~~~~~m~~~~ 482 (541)
+.-.++|++|.+-+++..+..
T Consensus 331 ~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 989999999998888876543
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=5.4e-05 Score=67.75 Aligned_cols=95 Identities=14% Similarity=0.129 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC---cchHHHH
Q 048358 387 EHYGCLVDLLGRAGRLDQALNIIEEM-PMKPDA----KIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPED---TGNYVLL 458 (541)
Q Consensus 387 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l 458 (541)
..|...+..+.+.|++++|...|+.+ ...|+. ..+.-+..+|...|++++|...|+++++..|++ +.++..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 34555555556678888888888877 334432 455667777888888888888888888777664 5566667
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhC
Q 048358 459 SNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 459 ~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
+.++...|++++|..+++.+.+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 77888888888888888887653
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.82 E-value=7.6e-05 Score=54.22 Aligned_cols=80 Identities=18% Similarity=0.296 Sum_probs=36.0
Q ss_pred cCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 048358 328 HGKAHKAIHLFHEMQRLKVP-PNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQAL 406 (541)
Q Consensus 328 ~~~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 406 (541)
.|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++. .+.. +.+......+..++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--PSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--HCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--CCCHHHHHHHHHHHHHhCCHHHHH
Confidence 34555555555555554310 1223333345555555555555555555 2111 112222333455555555555555
Q ss_pred HHHH
Q 048358 407 NIIE 410 (541)
Q Consensus 407 ~~~~ 410 (541)
+.|+
T Consensus 79 ~~l~ 82 (84)
T PF12895_consen 79 KALE 82 (84)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5554
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.03 Score=52.36 Aligned_cols=402 Identities=9% Similarity=0.038 Sum_probs=228.4
Q ss_pred hHHHHHHHHHHHhccCCchhHHHHHHHHHHcCCChHHHHHHHhcCCCCCc---chHHHHHHHHHcCCChhHHHHHHHHhh
Q 048358 28 IELKKIHTQILKYLLSQSNFLVTKMIDVCNSGGDLAYASLLFKQVKEPNV---FLYNAMIRAYTNNHLYGLAINLYKQML 104 (541)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~ll~~~~~~g~~~~A~~~~~~m~ 104 (541)
++..++.+.+.+. +-|...|-+|++-|...|..++-++.++++..|-+ ..|..-+.+=....++.....+|-+.+
T Consensus 26 ~D~lrLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL 103 (660)
T COG5107 26 GDELRLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCL 103 (660)
T ss_pred chHHHHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHH
Confidence 3444555555544 45788999999999999999999999999998654 368877887777889999999999888
Q ss_pred hCCCCCCCCCCCcccHHHHHHHHhccCCch------HHHHHHHHHHH-hCCCCch-hhHHHHHHHH---HcCC------C
Q 048358 105 RDPRTGSLILPDKFTLPFVIKSCAGLLCPS------LGKQIHAHVCK-FGLKSHS-ITENALLDLY---GKCD------E 167 (541)
Q Consensus 105 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~------~a~~~~~~~~~-~g~~~~~-~~~~~l~~~~---~~~g------~ 167 (541)
.. .-+...|..-+..-.+..+.- ...+.++-.+. .+++|-. ..|+..+..+ -..| +
T Consensus 104 ~k-------~l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqr 176 (660)
T COG5107 104 KK-------SLNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQR 176 (660)
T ss_pred hh-------hccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHH
Confidence 76 345566666665544433211 11233333332 3444433 2333333221 1122 3
Q ss_pred hHHHHHHHhhcCC-C--Ch-------hhHHHHHHH-----HHh--cCCHHHHHHHHhcCC--------------------
Q 048358 168 LIEAHKVFEEMTD-R--DI-------VAWNNLISG-----YAR--LGQMKKARMLFDKMP-------------------- 210 (541)
Q Consensus 168 ~~~A~~~~~~~~~-~--~~-------~~~~~l~~~-----~~~--~~~~~~A~~~~~~~~-------------------- 210 (541)
+|.....+.++.+ | +. ..|..=+.. +.- ..-+-.|...+++..
T Consensus 177 id~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~ 256 (660)
T COG5107 177 IDKIRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKA 256 (660)
T ss_pred HHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccc
Confidence 4555556666654 1 11 111100000 000 000111111111110
Q ss_pred ----------------------CCCc------chHHHHH--------------HHHHhcCChHHHHHHHHHHHHCCCCCC
Q 048358 211 ----------------------YTTI------VSWTAMI--------------SGYTHIGSYAEALDVFRQMQMVGIEPD 248 (541)
Q Consensus 211 ----------------------~~~~------~~~~~l~--------------~~~~~~g~~~~A~~~~~~m~~~~~~p~ 248 (541)
..++ ..|+..+ .-+...++-+.|+...+..... .|+
T Consensus 257 ~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--sps 334 (660)
T COG5107 257 ARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPS 334 (660)
T ss_pred cccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCc
Confidence 0011 1222221 1223456677777776554322 344
Q ss_pred hHHHHHHHH-HHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHh---cCCHHHHHHHHHccCCCChhHHHHHHHH
Q 048358 249 EISIVSVLP-ACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIK---CGCINQASQLFDQMVERDVVSWSTVIGG 324 (541)
Q Consensus 249 ~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~l~~~ 324 (541)
.+..+. .+....+-+.....|+...+.- ..-| ..+..-.. .|+++...+++-.-...-..+|...++.
T Consensus 335 ---L~~~lse~yel~nd~e~v~~~fdk~~q~L----~r~y-s~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~ 406 (660)
T COG5107 335 ---LTMFLSEYYELVNDEEAVYGCFDKCTQDL----KRKY-SMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNY 406 (660)
T ss_pred ---hheeHHHHHhhcccHHHHhhhHHHHHHHH----HHHH-hhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHH
Confidence 222222 2333334444434343332110 0000 00000000 1223222222222222345567778888
Q ss_pred HHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHH
Q 048358 325 LANHGKAHKAIHLFHEMQRLK-VPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLD 403 (541)
Q Consensus 325 ~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 403 (541)
-.+..-.+.|..+|.++.+.| +.++...+++++..++. |++..|..+|+.-...+ +.+..--+-.+..+.+.++-+
T Consensus 407 v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~f--~d~~~y~~kyl~fLi~inde~ 483 (660)
T COG5107 407 VLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLKF--PDSTLYKEKYLLFLIRINDEE 483 (660)
T ss_pred HHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHhC--CCchHHHHHHHHHHHHhCcHH
Confidence 888888999999999999988 67788888888887765 78889999999887743 334443456777788899999
Q ss_pred HHHHHHHhC--CCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC
Q 048358 404 QALNIIEEM--PMKPD--AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPED 451 (541)
Q Consensus 404 ~A~~~~~~~--~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (541)
.|..+|+.. .+..+ ...|..++.--..-|+...+..+-+++.+.-|..
T Consensus 484 naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 484 NARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 999999965 23333 5788889988888999999999888888887764
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00065 Score=54.66 Aligned_cols=90 Identities=12% Similarity=0.059 Sum_probs=77.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCH
Q 048358 391 CLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRW 468 (541)
Q Consensus 391 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 468 (541)
....-+...|++++|..+|.-+ -..| +..-|..|..++...+++++|+..|..+..++++||......+.+|...|+.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 3444566889999999999987 3334 5667788888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhh
Q 048358 469 EDVSRMRKLIRS 480 (541)
Q Consensus 469 ~~A~~~~~~m~~ 480 (541)
+.|+..|+...+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00098 Score=56.17 Aligned_cols=130 Identities=14% Similarity=0.185 Sum_probs=81.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHH
Q 048358 314 DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPN--DITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGC 391 (541)
Q Consensus 314 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 391 (541)
....+..+...+...|++++|...|++.......+. ...+..+..++.+.|++++|...+++..... +.+...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN--PKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHH
Confidence 344566677777777888888888887776432221 3466677777777788888888777777632 334555666
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 048358 392 LVDLLGRAGRLDQALNIIEEMPMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHG 466 (541)
Q Consensus 392 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 466 (541)
+...+...|+...+..-++.. ...+++|.++++++.+.+|++ +..++..+...|
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~ 165 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTG 165 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcC
Confidence 666666666655544322221 122677888888888888776 444444444444
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00013 Score=51.41 Aligned_cols=57 Identities=19% Similarity=0.211 Sum_probs=52.0
Q ss_pred HHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 048358 426 SSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKS 482 (541)
Q Consensus 426 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 482 (541)
..|.+.+++++|.++++++++.+|+++..+...+.++.+.|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 467889999999999999999999999999999999999999999999999987654
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00012 Score=50.01 Aligned_cols=61 Identities=23% Similarity=0.343 Sum_probs=44.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCc
Q 048358 392 LVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDT 452 (541)
Q Consensus 392 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 452 (541)
+...+...|++++|.+.|+.. ...| +...+..+..++...|++++|...|+++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456677788888888888877 4556 456777777778888888888888888888888764
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.025 Score=52.00 Aligned_cols=123 Identities=12% Similarity=0.169 Sum_probs=62.1
Q ss_pred HHHHHHhc-CCHHHHHHHHHccCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-----CCHH-HH
Q 048358 290 LIEMYIKC-GCINQASQLFDQMVE-----RD----VVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVP-----PNDI-TF 353 (541)
Q Consensus 290 l~~~~~~~-g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-----p~~~-~~ 353 (541)
+...|... |++++|.+.|++..+ .. ..++..+...+.+.|++++|.++|++....-.. .+.. .|
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 33444444 555555555544411 11 123455666777777888888877776654221 1121 22
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhhhhc-CCCCc--HhHHHHHHHHHHh--cCCHHHHHHHHHhC
Q 048358 354 IGLLSACAHTGFWNEGLMYFDSMKRDH-HIEHK--IEHYGCLVDLLGR--AGRLDQALNIIEEM 412 (541)
Q Consensus 354 ~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~--~~~~~~l~~~~~~--~g~~~~A~~~~~~~ 412 (541)
...+-++...||+..|...++...... ++..+ ......|+.++-. ...+.+|+.-|+.+
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 333345555677777777777765431 22222 2334455555543 23466666666666
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.68 E-value=6.1e-05 Score=42.51 Aligned_cols=30 Identities=20% Similarity=0.432 Sum_probs=23.1
Q ss_pred chHHHHHHHHHcCCChhHHHHHHHHhhhCC
Q 048358 78 FLYNAMIRAYTNNHLYGLAINLYKQMLRDP 107 (541)
Q Consensus 78 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~ 107 (541)
++||.++++|++.|++++|.++|++|.+.|
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 367788888888888888888888887765
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.68 E-value=6.7e-05 Score=42.33 Aligned_cols=31 Identities=45% Similarity=0.918 Sum_probs=23.3
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 048358 215 VSWTAMISGYTHIGSYAEALDVFRQMQMVGI 245 (541)
Q Consensus 215 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 245 (541)
++|+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677778888888888888888887777653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.011 Score=54.38 Aligned_cols=156 Identities=15% Similarity=0.218 Sum_probs=77.0
Q ss_pred HHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhc-CCHHHHHHHHhcCC-----CCC----cchHHHHHHHH
Q 048358 155 ENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARL-GQMKKARMLFDKMP-----YTT----IVSWTAMISGY 224 (541)
Q Consensus 155 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~-----~~~----~~~~~~l~~~~ 224 (541)
|...+..|...|++..|-+.+.+ +...|... |++++|.+.|++.. ... ...+..++..+
T Consensus 97 ~~~A~~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 97 YEKAIEIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY 165 (282)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence 33344455555555555444333 34444444 55565555555442 111 13455677778
Q ss_pred HhcCChHHHHHHHHHHHHCCCCC-----ChH-HHHHHHHHHHccCChHHHHHHHHHHHHhC--CCcc--HhHHHHHHHHH
Q 048358 225 THIGSYAEALDVFRQMQMVGIEP-----DEI-SIVSVLPACAQLGSLELGEWIHMYCDKNH--LLRR--TVICNALIEMY 294 (541)
Q Consensus 225 ~~~g~~~~A~~~~~~m~~~~~~p-----~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~--~~~~~~l~~~~ 294 (541)
.+.|++++|.++|++........ +.. .|...+-++...||...|...++...... +..+ ..+...|+.++
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~ 245 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY 245 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH
Confidence 88888888888888776543221 111 12223334455667777777776665432 2222 23445555555
Q ss_pred Hhc--CCHHHHHHHHHccCCCChhHHHHH
Q 048358 295 IKC--GCINQASQLFDQMVERDVVSWSTV 321 (541)
Q Consensus 295 ~~~--g~~~~A~~~~~~~~~~~~~~~~~l 321 (541)
-.. ..++.+..-|+.+.+.|..--..|
T Consensus 246 ~~~D~e~f~~av~~~d~~~~ld~w~~~~l 274 (282)
T PF14938_consen 246 EEGDVEAFTEAVAEYDSISRLDNWKTKML 274 (282)
T ss_dssp HTT-CCCHHHHCHHHTTSS---HHHHHHH
T ss_pred HhCCHHHHHHHHHHHcccCccHHHHHHHH
Confidence 432 346666666666666655433333
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.012 Score=48.04 Aligned_cols=132 Identities=14% Similarity=0.128 Sum_probs=101.0
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHHHH
Q 048358 346 VPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP---DAKIW 421 (541)
Q Consensus 346 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~ 421 (541)
.-|+...-..|..+....|++.+|...|++... +-+..|......+..+....+++..|...++++ ...| ++.+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 357777777888888899999999999998886 355677777888888888999999999888887 2222 22334
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048358 422 GSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIR 479 (541)
Q Consensus 422 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 479 (541)
..+...+...|.+..|+..|+.+++..|. +......+..+.++|+.++|..-+..+.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 45667788899999999999999887776 5667777888889998777765554443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00011 Score=50.82 Aligned_cols=60 Identities=17% Similarity=0.287 Sum_probs=33.7
Q ss_pred ccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHH
Q 048358 362 HTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPDAKIWGS 423 (541)
Q Consensus 362 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ 423 (541)
..|++++|+++|+.+.... |.+...+..++.+|.+.|++++|.++++++ ...|+...|..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 63 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQ 63 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence 4566666666666666532 445555556666666666666666666666 34455444433
|
... |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0016 Score=59.67 Aligned_cols=131 Identities=11% Similarity=0.048 Sum_probs=94.6
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhh---hhcCCC-CcHhHHHHHHHHHHhcCCHHHHHHHHHhC-------CC-CCCH
Q 048358 351 ITFIGLLSACAHTGFWNEGLMYFDSMK---RDHHIE-HKIEHYGCLVDLLGRAGRLDQALNIIEEM-------PM-KPDA 418 (541)
Q Consensus 351 ~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~-~p~~ 418 (541)
..|..|.+.|.-.|+++.|+...+.-. +.+|-. .....+..+..++.-.|+++.|.+.|+.. +- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 356677777777899999987765422 222221 22345778888999999999999888764 21 2345
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHhcc----C--CCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 419 KIWGSLLSSCRTYSNLEIAVIAMEHLLVL----E--PEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 419 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
....+|...|.-..++++|+.++.+-+.+ + .....++..|+.+|...|..++|+.+.+.-.+.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 66777888888888999999988776543 2 234668889999999999999999887765543
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.019 Score=51.10 Aligned_cols=60 Identities=10% Similarity=-0.011 Sum_probs=37.4
Q ss_pred HHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCc-ccH---HHHHHHHhccCCchHHHHHHHHHHHhCC
Q 048358 82 AMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDK-FTL---PFVIKSCAGLLCPSLGKQIHAHVCKFGL 148 (541)
Q Consensus 82 ~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~-~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 148 (541)
.....+...|++++|.+.|+.+.... |+. ... ..+..++.+.++++.|...++..++..+
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~y-------P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P 100 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRY-------PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP 100 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 34445566777777777777777653 322 222 3445566677777777777777777643
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0025 Score=53.49 Aligned_cols=62 Identities=15% Similarity=0.193 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 048358 317 SWSTVIGGLANHGKAHKAIHLFHEMQRLKVPP--NDITFIGLLSACAHTGFWNEGLMYFDSMKR 378 (541)
Q Consensus 317 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 378 (541)
.|..+...+...|++++|+..|++.......| ...++..+...+...|++++|+..++....
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444445555555555555554332111 112444444445555555555555555443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0014 Score=59.98 Aligned_cols=129 Identities=15% Similarity=0.155 Sum_probs=99.8
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHh-cCCHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 048358 351 ITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGR-AGRLDQALNIIEEM--PMKPDAKIWGSLLSS 427 (541)
Q Consensus 351 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~ 427 (541)
.+|..+++..-+.+..+.|..+|..+.+.. ..+...|...+..-.. .++.+.|.++|+.. ....+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~--~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK--RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 467888888888999999999999998643 3344555555555344 56677799999998 344577888889999
Q ss_pred HhhcCCHHHHHHHHHHHhccCCCCc---chHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 428 CRTYSNLEIAVIAMEHLLVLEPEDT---GNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 428 ~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
+...++.+.|..+|++++..-|.+. ..|...+..-.+.|+.+.+..+.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998765543 58999999999999999999999888764
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0057 Score=60.81 Aligned_cols=138 Identities=13% Similarity=0.056 Sum_probs=99.3
Q ss_pred CCCCCCHHHHHHHHHHHhc--c---CcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhc--------CCHHHHHHHHH
Q 048358 344 LKVPPNDITFIGLLSACAH--T---GFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRA--------GRLDQALNIIE 410 (541)
Q Consensus 344 ~~~~p~~~~~~~l~~~~~~--~---g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~ 410 (541)
.+.+.|...|...+++... . ++...|..+|++..+.. |.....|..+..++... ++...+.+..+
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 3446778888888887443 2 34778999999998742 33345555544444322 12334445554
Q ss_pred hC---C-CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCc
Q 048358 411 EM---P-MKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMK 484 (541)
Q Consensus 411 ~~---~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 484 (541)
+. + ...+...+..+...+...|++++|...++++++++| +...|..++.++...|+.++|.+.+++....+..
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 43 1 223557777777777788999999999999999999 5789999999999999999999999998766543
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0011 Score=63.12 Aligned_cols=117 Identities=13% Similarity=0.058 Sum_probs=64.2
Q ss_pred CCchhHHHHHHHHHHcCCChHHHHHHHhcCCC------CCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCC
Q 048358 43 SQSNFLVTKMIDVCNSGGDLAYASLLFKQVKE------PNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPD 116 (541)
Q Consensus 43 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~ 116 (541)
+-+......+++.+....+++.+..++-+... --..+.+++++.|...|..++++.+++.=...|+ -||
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGi-----F~D 137 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGI-----FPD 137 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhccc-----CCC
Confidence 33444555555555555555555555554432 1122344666666666666666666666666665 666
Q ss_pred cccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHc
Q 048358 117 KFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGK 164 (541)
Q Consensus 117 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 164 (541)
..+++.|+..+.+.|++..|.++..+|...+...+..|+...+.+|.+
T Consensus 138 ~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 138 NFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred hhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 666666666666666666666666665555544444444444444433
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.082 Score=49.03 Aligned_cols=111 Identities=10% Similarity=0.106 Sum_probs=83.8
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 048358 351 ITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKPDAKIWGSLLSSCRT 430 (541)
Q Consensus 351 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 430 (541)
.+.+..+.-+...|....|.++-.+. . .|+...|-..+.+|+..+++++-.++... +-.+.-|..++.+|.+
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----K-VPDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 35555666777788887777765544 2 37888899999999999999988876554 2345778889999999
Q ss_pred cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHh
Q 048358 431 YSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLI 478 (541)
Q Consensus 431 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 478 (541)
.|+..+|..+..++ .+..-+..|.+.|+|.+|.+.--+.
T Consensus 250 ~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 250 YGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 99999999888771 1246677889999999998765544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.032 Score=54.51 Aligned_cols=104 Identities=12% Similarity=-0.042 Sum_probs=55.8
Q ss_pred CchhHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHH
Q 048358 44 QSNFLVTKMIDVCNSGGDLAYASLLFKQVKEPNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFV 123 (541)
Q Consensus 44 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~l 123 (541)
+.+..+.+-+--|...|.+++|.++---.. ....|.-+.......=+++-|.+.|.+.+...
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgV--v~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~---------------- 615 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIACLGV--TDTDWRELAMEALEALDFETARKAYIRVRDLR---------------- 615 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccccce--ecchHHHHHHHHHhhhhhHHHHHHHHHHhccH----------------
Confidence 334444444555677777777765432211 12235444444444444455555444443221
Q ss_pred HHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhh
Q 048358 124 IKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEE 177 (541)
Q Consensus 124 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 177 (541)
+-+...-++++.+.|-.|+... +...++-.|++.+|-++|.+
T Consensus 616 ---------~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 616 ---------YLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred ---------HHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 1122334566677776676654 45667778888888887776
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00026 Score=49.13 Aligned_cols=65 Identities=22% Similarity=0.324 Sum_probs=47.4
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcC-CHHHHHHHHHHHhccCC
Q 048358 385 KIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYS-NLEIAVIAMEHLLVLEP 449 (541)
Q Consensus 385 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~ 449 (541)
+...|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3456777777777788888888777776 4445 4566777777777777 68888888888887776
|
... |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.022 Score=50.77 Aligned_cols=174 Identities=13% Similarity=0.067 Sum_probs=95.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHccCC--CCh-hH---HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 048358 289 ALIEMYIKCGCINQASQLFDQMVE--RDV-VS---WSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAH 362 (541)
Q Consensus 289 ~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 362 (541)
.....+...|++++|.+.|+.+.. |+. .. .-.++.++.+.+++++|...+++..+....-....+...+.+.+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 345555666777777777777643 211 11 233455666777777777777777664311111223333333221
Q ss_pred --cC---------------c---HHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHH
Q 048358 363 --TG---------------F---WNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKPDAKIWG 422 (541)
Q Consensus 363 --~g---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 422 (541)
.+ + ...|...|+.+.+.+ |+.. -..+|...+..+...--..- .
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~S~-------------ya~~A~~rl~~l~~~la~~e-~ 179 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PNSQ-------------YTTDATKRLVFLKDRLAKYE-L 179 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cCCh-------------hHHHHHHHHHHHHHHHHHHH-H
Confidence 10 1 123344444444432 2221 12222222222210000000 1
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHhccCCCC---cchHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048358 423 SLLSSCRTYSNLEIAVIAMEHLLVLEPED---TGNYVLLSNIYAKHGRWEDVSRMRKLIR 479 (541)
Q Consensus 423 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 479 (541)
.+..-|.+.|.+..|+.-++.+++.-|+. ++++..+..+|...|..++|..+...+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 23344888999999999999999877764 5577788899999999999998877653
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0027 Score=47.12 Aligned_cols=81 Identities=16% Similarity=0.066 Sum_probs=66.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCChHHHHHHHHHHHccC--------ChHHHHHHHHHHHHhCCCccHhH
Q 048358 216 SWTAMISGYTHIGSYAEALDVFRQMQMVGI-EPDEISIVSVLPACAQLG--------SLELGEWIHMYCDKNHLLRRTVI 286 (541)
Q Consensus 216 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 286 (541)
+-...|.-+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-....+++.+...+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344556667777999999999999999999 999999999999877653 23456788889999999999999
Q ss_pred HHHHHHHHHh
Q 048358 287 CNALIEMYIK 296 (541)
Q Consensus 287 ~~~l~~~~~~ 296 (541)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9988887664
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0021 Score=61.27 Aligned_cols=118 Identities=14% Similarity=0.181 Sum_probs=98.8
Q ss_pred cCCCCChhhHHHHHHhccChhHHHHHHHHHHHhccCCc-----hhHHHHHHHHHHcCCChHHHHHHHhcCCC----CCcc
Q 048358 8 LSIKELEDRFVPILQSCENLIELKKIHTQILKYLLSQS-----NFLVTKMIDVCNSGGDLAYASLLFKQVKE----PNVF 78 (541)
Q Consensus 8 ~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~ 78 (541)
++.+..+-.+...+..+.+..++..+...+-+....|+ +.+..++|+.|.+.|..+.+..+++.=.. ||.+
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 55666777888888888888888777777776665543 45678999999999999999999987554 9999
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhcc
Q 048358 79 LYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGL 130 (541)
Q Consensus 79 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~ 130 (541)
++|.+++.+.+.|++..|.++...|...+. ..++.|+...+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~-----~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEE-----FDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhc-----cCCchHHHHHHHHHHHh
Confidence 999999999999999999999999988876 77778888888877766
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0028 Score=48.94 Aligned_cols=85 Identities=16% Similarity=0.129 Sum_probs=42.0
Q ss_pred HHHHHhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC---CcchHHHHHHHHHh
Q 048358 393 VDLLGRAGRLDQALNIIEEM---PMKPD--AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPE---DTGNYVLLSNIYAK 464 (541)
Q Consensus 393 ~~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 464 (541)
..++-..|+.++|+.+|++. +.... ...+..+...+...|++++|..++++.....|+ +......++.++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 34444455555555555544 21111 223344444555555555555555555554444 34444445555555
Q ss_pred cCCHHHHHHHHHH
Q 048358 465 HGRWEDVSRMRKL 477 (541)
Q Consensus 465 ~g~~~~A~~~~~~ 477 (541)
.|+.++|.+.+-.
T Consensus 88 ~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 88 LGRPKEALEWLLE 100 (120)
T ss_pred CCCHHHHHHHHHH
Confidence 5666665555433
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00011 Score=42.13 Aligned_cols=32 Identities=25% Similarity=0.566 Sum_probs=30.4
Q ss_pred HHHHhccCCCCcchHHHHHHHHHhcCCHHHHH
Q 048358 441 MEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVS 472 (541)
Q Consensus 441 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 472 (541)
|+++++++|+++.+|..|+.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67899999999999999999999999999996
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0015 Score=58.65 Aligned_cols=101 Identities=11% Similarity=0.087 Sum_probs=79.9
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCc---HhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHH
Q 048358 351 ITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHK---IEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPD----AKIWG 422 (541)
Q Consensus 351 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~ 422 (541)
..|...+....+.|++++|+..|+.+.+.+ |.+ ...+..+..+|...|++++|...|+.+ ...|+ ...+.
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 445555555567799999999999999864 222 356778999999999999999999998 32332 45566
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHhccCCCCcc
Q 048358 423 SLLSSCRTYSNLEIAVIAMEHLLVLEPEDTG 453 (541)
Q Consensus 423 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 453 (541)
.+...+...|+.++|...|+++++..|++..
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 6677788999999999999999999998753
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00076 Score=62.00 Aligned_cols=88 Identities=11% Similarity=0.016 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCE
Q 048358 418 AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNE 497 (541)
Q Consensus 418 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~ 497 (541)
..++..+..++.+.+++..|++..++.++.+|+|..+++.=+.++...|+++.|+..|+++.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k----------------- 319 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK----------------- 319 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH-----------------
Confidence 345566666677777777788777777777777777777777777777888888877777765
Q ss_pred EEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCC
Q 048358 498 VQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDV 531 (541)
Q Consensus 498 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a 531 (541)
++|++.++...|..+..+..++.+.
T Consensus 320 ---------~~P~Nka~~~el~~l~~k~~~~~~k 344 (397)
T KOG0543|consen 320 ---------LEPSNKAARAELIKLKQKIREYEEK 344 (397)
T ss_pred ---------hCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777776666665555443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.1 Score=52.83 Aligned_cols=180 Identities=14% Similarity=0.040 Sum_probs=117.3
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHHhcCCCCCcc---hHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHH
Q 048358 46 NFLVTKMIDVCNSGGDLAYASLLFKQVKEPNVF---LYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPF 122 (541)
Q Consensus 46 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ 122 (541)
......-+..+.+...+.-|..+-+.-.-+... ......+-+.+.|++++|..-|-+-+..- .| ..
T Consensus 334 ek~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l------e~-----s~ 402 (933)
T KOG2114|consen 334 EKDLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL------EP-----SE 402 (933)
T ss_pred eccHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC------Ch-----HH
Confidence 334556677788888888888888765432222 22333455678999999998887765321 22 23
Q ss_pred HHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCCCChh-hHHHHHHHHHhcCCHHH
Q 048358 123 VIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIV-AWNNLISGYARLGQMKK 201 (541)
Q Consensus 123 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~ 201 (541)
+++-+........-..+++.+.+.|+. +...-..|+.+|.+.++.++-.+..+........ -....+..+.+.+-.++
T Consensus 403 Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 403 VIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDE 481 (933)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHH
Confidence 555566666667777888888888865 4455577999999999999998888887632111 23445566666666666
Q ss_pred HHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 048358 202 ARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQ 241 (541)
Q Consensus 202 A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 241 (541)
|..+-..... +.. .+--.+-..+++++|++++..+.
T Consensus 482 a~~LA~k~~~-he~---vl~ille~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 482 AELLATKFKK-HEW---VLDILLEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHhcc-CHH---HHHHHHHHhcCHHHHHHHHhcCC
Confidence 6665554433 222 23333455788999998888763
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.013 Score=52.01 Aligned_cols=118 Identities=17% Similarity=0.108 Sum_probs=90.6
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcC---CHHHHHHHH
Q 048358 333 KAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAG---RLDQALNII 409 (541)
Q Consensus 333 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~ 409 (541)
....-++.-...+ |-|...|..|..+|...|+++.|...|....+- .+++...+..+..++.... ...++..+|
T Consensus 140 ~l~a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 140 ALIARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred HHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 3333344444444 678889999999999999999999999999874 3667777777777766443 466788899
Q ss_pred HhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcc
Q 048358 410 EEM-PMKPD-AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTG 453 (541)
Q Consensus 410 ~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 453 (541)
+++ ..+|+ ..+...|...+...|++.+|...++.|++..|++..
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 988 66674 555666666799999999999999999999887643
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.092 Score=48.73 Aligned_cols=154 Identities=8% Similarity=0.004 Sum_probs=81.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHH--HHccCChHHHHHHHHHHHHhCCCcc-----------HhHHH
Q 048358 222 SGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPA--CAQLGSLELGEWIHMYCDKNHLLRR-----------TVICN 288 (541)
Q Consensus 222 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~ 288 (541)
.++.-.|+.++|...--..++.. ++ ..+...+++ +...++.+.+...|.+.++.+.... ...+.
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld--~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD--AT-NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc--cc-hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHH
Confidence 34455566666655554444331 11 112222222 2334455555555555554332110 11122
Q ss_pred HHHHHHHhcCCHHHHHHHHHccCCC-------ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 048358 289 ALIEMYIKCGCINQASQLFDQMVER-------DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACA 361 (541)
Q Consensus 289 ~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 361 (541)
.=.+-..+.|++..|.+.|.+.+.. +...|........+.|+..+|+.--+...+.+ +.=...|..-..++.
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l 332 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHL 332 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHH
Confidence 2234456778888888888777432 34456566666677788888877777666542 111223333345556
Q ss_pred ccCcHHHHHHHHHHhhhh
Q 048358 362 HTGFWNEGLMYFDSMKRD 379 (541)
Q Consensus 362 ~~g~~~~a~~~~~~~~~~ 379 (541)
..++|++|.+-|+...+.
T Consensus 333 ~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 667788888888777653
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.017 Score=49.87 Aligned_cols=138 Identities=12% Similarity=0.105 Sum_probs=101.6
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHh-----HHHH
Q 048358 215 VSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTV-----ICNA 289 (541)
Q Consensus 215 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~ 289 (541)
...+.++.++...|.+.-....+.+..+..-+-+......+.+...+.||.+.|...|+...+..-..+.. +...
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 45667778888888888889999998887656677777788888888999999999999777654333333 3334
Q ss_pred HHHHHHhcCCHHHHHHHHHccCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 048358 290 LIEMYIKCGCINQASQLFDQMVER---DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFI 354 (541)
Q Consensus 290 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 354 (541)
....|.-.+++..|...+.+++.. |+...|.-.-+....|+..+|++.++.|.... |.+.+-+
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~--P~~~l~e 323 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD--PRHYLHE 323 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC--Cccchhh
Confidence 455667778888898888887553 55666666666777789999999999988863 5444433
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.037 Score=45.32 Aligned_cols=133 Identities=12% Similarity=0.072 Sum_probs=85.8
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHH
Q 048358 313 RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCL 392 (541)
Q Consensus 313 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 392 (541)
|++..-..|..++...|++.+|...|.+...--.--|......+.++....+++..|...++.+.+.+.-..++.....+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 34444555677777778888888888777665455566777777777777788888888877776543222233445667
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHh
Q 048358 393 VDLLGRAGRLDQALNIIEEM-PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLL 445 (541)
Q Consensus 393 ~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 445 (541)
.+.|...|++.+|..-|+-. ...|+...-......+.++|+.+++..-+..+.
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 77788888888887777766 445555444444445566776666655444433
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0011 Score=57.94 Aligned_cols=89 Identities=13% Similarity=0.139 Sum_probs=55.3
Q ss_pred hhcCCHHHHHHHHHHHhccCCCC---cchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCC
Q 048358 429 RTYSNLEIAVIAMEHLLVLEPED---TGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGD 505 (541)
Q Consensus 429 ~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (541)
.+.|++..|...|...++..|.+ +.+++-|+.++...|++++|..+|..+...-
T Consensus 152 ~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~----------------------- 208 (262)
T COG1729 152 YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY----------------------- 208 (262)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC-----------------------
Confidence 34556666666666666666553 4456666666666666666666666655421
Q ss_pred CCCCChhHHHHHHHHHHHHHhcccCCcccccccCC
Q 048358 506 DTKPFLKDIFWLLELLALHQDRAKDVIDIMYEDIG 540 (541)
Q Consensus 506 ~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~i~ 540 (541)
..+|..++.+..|+....++|+.++|-.++.++|+
T Consensus 209 P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 209 PKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred CCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 13556666666666666666666666666666654
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.15 Score=47.43 Aligned_cols=108 Identities=19% Similarity=0.203 Sum_probs=64.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHH
Q 048358 288 NALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWN 367 (541)
Q Consensus 288 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 367 (541)
+..+.-+...|+...|.++-.+..-|+..-|...+.+++..++|++-..+... +-++.-|..++.+|.+.|...
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 33344555666667777776666666666777777777777777665554321 112356666677777777766
Q ss_pred HHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 048358 368 EGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM 412 (541)
Q Consensus 368 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 412 (541)
+|..+...+. + ..-+..|.++|++.+|.+.--+.
T Consensus 255 eA~~yI~k~~------~-----~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 255 EASKYIPKIP------D-----EERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHHHhCC------h-----HHHHHHHHHCCCHHHHHHHHHHc
Confidence 6666665521 1 23455666666666666554443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.012 Score=45.56 Aligned_cols=93 Identities=11% Similarity=0.108 Sum_probs=54.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCh--HHHHHHHHHHHccCChHHHHHHHHHHHHhCCC--ccHhHHHHHHHHH
Q 048358 219 AMISGYTHIGSYAEALDVFRQMQMVGIEPDE--ISIVSVLPACAQLGSLELGEWIHMYCDKNHLL--RRTVICNALIEMY 294 (541)
Q Consensus 219 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~ 294 (541)
.+..++-..|+.++|+.+|++....|...+. ..+..+...+...|++++|..+++........ .+......+..++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 3456677788888888888888887755442 23444555666677777777777666554211 1122223333455
Q ss_pred HhcCCHHHHHHHHHccC
Q 048358 295 IKCGCINQASQLFDQMV 311 (541)
Q Consensus 295 ~~~g~~~~A~~~~~~~~ 311 (541)
...|+.++|...+-...
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 55666666666554433
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.005 Score=45.78 Aligned_cols=78 Identities=13% Similarity=0.167 Sum_probs=57.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHhccC--------cHHHHHHHHHHhhhhcCCCCcHhHHH
Q 048358 320 TVIGGLANHGKAHKAIHLFHEMQRLKV-PPNDITFIGLLSACAHTG--------FWNEGLMYFDSMKRDHHIEHKIEHYG 390 (541)
Q Consensus 320 ~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~~ 390 (541)
..|..+...+++.....+|+.+++.|+ -|+..+|+.++.+.++.. ++...+.+|+.+... +++|+..+|+
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~etYn 108 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDETYN 108 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHHHH
Confidence 345555566888888888888888888 788888888888766542 344566777777764 6788888888
Q ss_pred HHHHHHHh
Q 048358 391 CLVDLLGR 398 (541)
Q Consensus 391 ~l~~~~~~ 398 (541)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 87777654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.29 Score=49.19 Aligned_cols=306 Identities=10% Similarity=0.037 Sum_probs=164.1
Q ss_pred HHHHHHHcCCChHHHHHHHhhcCCCC---hhhHHHHHHHHHhcC---CHHHHHHHHhcCCC--CCcchHHHHHHHHHhcC
Q 048358 157 ALLDLYGKCDELIEAHKVFEEMTDRD---IVAWNNLISGYARLG---QMKKARMLFDKMPY--TTIVSWTAMISGYTHIG 228 (541)
Q Consensus 157 ~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g 228 (541)
.+++-+...+.+..|.++-..+..|. ...+.....-+.+.. +-+-+..+-+++.. ....+|..+++.....|
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~G 521 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEG 521 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcC
Confidence 34555666666777777766666554 344555555555442 22233333344443 33456666666666677
Q ss_pred ChHHHHHHHHHHHHCCCC----CChHHHHHHHHHHHccCChHHHHHHHHHHHHhC-----------CCccHhHHHHHHH-
Q 048358 229 SYAEALDVFRQMQMVGIE----PDEISIVSVLPACAQLGSLELGEWIHMYCDKNH-----------LLRRTVICNALIE- 292 (541)
Q Consensus 229 ~~~~A~~~~~~m~~~~~~----p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----------~~~~~~~~~~l~~- 292 (541)
+.+-|..+++.=...+.+ .+-.-+...+.-+...|+.+....++-.+.+.- .+.....|.-++.
T Consensus 522 R~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~ 601 (829)
T KOG2280|consen 522 RFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRH 601 (829)
T ss_pred cHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHh
Confidence 777776665442211110 011123344455556666666555554444321 1111112222111
Q ss_pred -------HHHhcCCHHHHHHHH--Hcc-----CCCChhHHHHHHHHHHhcCCh---HH-------HHHHHHHHHh-CCCC
Q 048358 293 -------MYIKCGCINQASQLF--DQM-----VERDVVSWSTVIGGLANHGKA---HK-------AIHLFHEMQR-LKVP 347 (541)
Q Consensus 293 -------~~~~~g~~~~A~~~~--~~~-----~~~~~~~~~~l~~~~~~~~~~---~~-------a~~~~~~m~~-~~~~ 347 (541)
.+.+.++..++..-| +.. .++-..........+.+.... ++ -+.+.+.+.. .|..
T Consensus 602 ~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~ 681 (829)
T KOG2280|consen 602 QDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGS 681 (829)
T ss_pred hchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 011111111111111 110 011111122233333333221 11 1122222221 2334
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048358 348 PNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKPDAKIWGSLLSS 427 (541)
Q Consensus 348 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~ 427 (541)
...-+.+--+..+...|+-.+|.++-.+.+ -|+-..|-.-+.++...+++++-.++-+..+ .+.-|.-++.+
T Consensus 682 f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~ 753 (829)
T KOG2280|consen 682 FVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEA 753 (829)
T ss_pred cccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHH
Confidence 445566666777778899999988877665 3788888888999999999998888877764 24556678889
Q ss_pred HhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHh
Q 048358 428 CRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLI 478 (541)
Q Consensus 428 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 478 (541)
|.+.|+.++|..++.+.-.. .-...+|.+.|++.+|.++--+-
T Consensus 754 c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 754 CLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred HHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHHHHh
Confidence 99999999999888764331 25678899999999988765543
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0014 Score=45.93 Aligned_cols=64 Identities=22% Similarity=0.385 Sum_probs=48.6
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHH
Q 048358 394 DLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVL 457 (541)
Q Consensus 394 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 457 (541)
..|.+.+++++|.++++.+ ...| +...|......+.+.|++++|.+.++++++..|+++.....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 5677888888888888887 5555 45666667777888888888888888888888877654443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00073 Score=41.70 Aligned_cols=42 Identities=21% Similarity=0.376 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 048358 419 KIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSN 460 (541)
Q Consensus 419 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 460 (541)
.++..+..+|...|++++|++.++++++..|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 357778889999999999999999999999999999888764
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.014 Score=50.50 Aligned_cols=60 Identities=17% Similarity=0.158 Sum_probs=31.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhc
Q 048358 321 VIGGLANHGKAHKAIHLFHEMQRLK--VPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDH 380 (541)
Q Consensus 321 l~~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 380 (541)
....+...|++.+|...|+.+...- -+--......++.++.+.|+++.|...++...+.+
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3444555666666666666665532 01112334455566666666666666666666554
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.23 Score=45.91 Aligned_cols=245 Identities=18% Similarity=0.184 Sum_probs=146.5
Q ss_pred cCChHHHHHHHHHHHHCCCCCChHH--HHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHH
Q 048358 227 IGSYAEALDVFRQMQMVGIEPDEIS--IVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQAS 304 (541)
Q Consensus 227 ~g~~~~A~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 304 (541)
.|+++.|.+-|+.|.. .|.... ...+.-..-+.|+.+.|..+-...-..-.. -.-.+...+...+..|+++.|+
T Consensus 133 eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~Al 208 (531)
T COG3898 133 EGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGAL 208 (531)
T ss_pred cCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHH
Confidence 4666666666666653 122111 112222234555555555555544433211 1334556666677777777777
Q ss_pred HHHHcc-----CCCChh--HHHHHHHHHH---hcCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHhccCcHHHHHHHH
Q 048358 305 QLFDQM-----VERDVV--SWSTVIGGLA---NHGKAHKAIHLFHEMQRLKVPPNDIT-FIGLLSACAHTGFWNEGLMYF 373 (541)
Q Consensus 305 ~~~~~~-----~~~~~~--~~~~l~~~~~---~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~ 373 (541)
++++.- .+++.. .-..|+.+-. -.-+...|...-.+..+ +.|+... -..-..++.+.|+..++-.++
T Consensus 209 kLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~il 286 (531)
T COG3898 209 KLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKIL 286 (531)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHH
Confidence 776544 223322 1112222111 12345566665555544 3566543 234466789999999999999
Q ss_pred HHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccC
Q 048358 374 DSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM----PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLE 448 (541)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 448 (541)
+.+-+. .|.+..+..++ +.+.|+. ++.=+++. ..+| +......+..+....|++..|..--+.+....
T Consensus 287 E~aWK~---ePHP~ia~lY~--~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~ 359 (531)
T COG3898 287 ETAWKA---EPHPDIALLYV--RARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREA 359 (531)
T ss_pred HHHHhc---CCChHHHHHHH--HhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhC
Confidence 999874 57776554333 3355553 33322222 3456 45667777788889999999999988888888
Q ss_pred CCCcchHHHHHHHHHhc-CCHHHHHHHHHHhhhCCCcc
Q 048358 449 PEDTGNYVLLSNIYAKH-GRWEDVSRMRKLIRSKSMKK 485 (541)
Q Consensus 449 ~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~~ 485 (541)
|. ...|..|+++-... |+-.++...+-+....+-.|
T Consensus 360 pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 360 PR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred ch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 87 56888888887766 99999999998887765433
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0027 Score=59.93 Aligned_cols=98 Identities=14% Similarity=0.038 Sum_probs=66.6
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHH
Q 048358 383 EHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPDA----KIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVL 457 (541)
Q Consensus 383 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 457 (541)
+.+...++.+..+|...|++++|+..|++. .+.|+. .+|..+..+|...|+.++|+..++++++..++ .|..
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~ 148 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFST 148 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHH
Confidence 445677888888888888888888888875 667764 35788888888888888888888888886422 1221
Q ss_pred HHH--HHHhcCCHHHHHHHHHHhhhCCC
Q 048358 458 LSN--IYAKHGRWEDVSRMRKLIRSKSM 483 (541)
Q Consensus 458 l~~--~~~~~g~~~~A~~~~~~m~~~~~ 483 (541)
+.. .+..-.+.++..++++....-|.
T Consensus 149 i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 149 ILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 111 12223344567777777777665
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.023 Score=55.48 Aligned_cols=81 Identities=20% Similarity=0.169 Sum_probs=40.4
Q ss_pred HHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHH-------------HHHHH
Q 048358 158 LLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTA-------------MISGY 224 (541)
Q Consensus 158 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------------l~~~~ 224 (541)
+..-+.+...+.-|-++|.+|-+ ...+++.....++|.+|..+-+..++--...|-. --.+|
T Consensus 753 ~a~ylk~l~~~gLAaeIF~k~gD-----~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAf 827 (1081)
T KOG1538|consen 753 CATYLKKLDSPGLAAEIFLKMGD-----LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAF 827 (1081)
T ss_pred HHHHHhhccccchHHHHHHHhcc-----HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHH
Confidence 33333444455555556655532 1234445555566666666655555321111111 12345
Q ss_pred HhcCChHHHHHHHHHHHHC
Q 048358 225 THIGSYAEALDVFRQMQMV 243 (541)
Q Consensus 225 ~~~g~~~~A~~~~~~m~~~ 243 (541)
.+.|+-.+|..+++++-..
T Consensus 828 hkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 828 HKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHhcchHHHHHHHHHhhhh
Confidence 5667777777777766543
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.073 Score=46.43 Aligned_cols=76 Identities=18% Similarity=0.212 Sum_probs=51.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHH
Q 048358 321 VIGGLANHGKAHKAIHLFHEMQRLK--VPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLG 397 (541)
Q Consensus 321 l~~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 397 (541)
-+..-.+.|++++|.+.|+.+.... -+-...+...++.++.+.++++.|+...++..+.++-.|+.. |-..+.++.
T Consensus 40 ~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs 117 (254)
T COG4105 40 EGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLS 117 (254)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHH
Confidence 3444556788888888888887642 122345566677778888888888888888887766666665 555555544
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.11 Score=48.72 Aligned_cols=161 Identities=16% Similarity=0.037 Sum_probs=95.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHccCCC-------ChhHHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048358 288 NALIEMYIKCGCINQASQLFDQMVER-------DVVSWSTVIGGLAN---HGKAHKAIHLFHEMQRLKVPPNDITFIGLL 357 (541)
Q Consensus 288 ~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 357 (541)
..++-.|....+++...++.+.+... ....-....-++.+ .|+.++|+.++..+....-.+++.+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34455566677777777777766443 12222233445555 678888888887755555577777777776
Q ss_pred HHHhc---------cCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHH----HHHHHH---HhC-------CC
Q 048358 358 SACAH---------TGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLD----QALNII---EEM-------PM 414 (541)
Q Consensus 358 ~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~A~~~~---~~~-------~~ 414 (541)
..|-. ....++|+..|.+.-.. .|+...--.++..+...|... +..++- ... .-
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~---~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEI---EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHcC---CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 66532 22466777777766542 344332222333333333311 222222 111 12
Q ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC
Q 048358 415 KPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPED 451 (541)
Q Consensus 415 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (541)
..+-..+..++.++.-.|+.++|.+.++++.+..|+.
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 2456677788888999999999999999999988774
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.41 Score=46.95 Aligned_cols=403 Identities=10% Similarity=0.056 Sum_probs=220.1
Q ss_pred chhHHHHHHHHHHcCCChHHHHHHHhcCCC--CCcc-hHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHH
Q 048358 45 SNFLVTKMIDVCNSGGDLAYASLLFKQVKE--PNVF-LYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLP 121 (541)
Q Consensus 45 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~-~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~ 121 (541)
+-..++.+|.--....+++.+..+++.+.. |... -|......=.+-|..+.+..+|++-+.. + +-+...|.
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-i-----p~SvdlW~ 117 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-I-----PLSVDLWL 117 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-h-----hhHHHHHH
Confidence 334555555544444555566666666553 4443 2444555556677888888888887653 2 54555565
Q ss_pred HHHHHHh-ccCCchHHHHHHHHHHHh-CCC-CchhhHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHh---
Q 048358 122 FVIKSCA-GLLCPSLGKQIHAHVCKF-GLK-SHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYAR--- 195 (541)
Q Consensus 122 ~ll~~~~-~~~~~~~a~~~~~~~~~~-g~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~--- 195 (541)
..+..+. ..|+.+.....|+.++.. |.. .+...|...+..--.++++.....+++++.+-....++.....|.+
T Consensus 118 ~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~ 197 (577)
T KOG1258|consen 118 SYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLN 197 (577)
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHh
Confidence 5555443 446777777777777664 322 2344566667666777788888888888776444444444433332
Q ss_pred c------CCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHH--HHHHHH-------HHH
Q 048358 196 L------GQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEIS--IVSVLP-------ACA 260 (541)
Q Consensus 196 ~------~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~ll~-------~~~ 260 (541)
. ...+++.++-...... ..-...++..+-.+.+ +...+-+.+..+ .+.+-. .+-
T Consensus 198 ~~~~~~l~~~d~~~~l~~~~~~~---------~~~~~~~~~~e~~~~~--v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~ 266 (577)
T KOG1258|consen 198 QNEEKILLSIDELIQLRSDVAER---------SKITHSQEPLEELEIG--VKDSTDPSKSLTEEKTILKRIVSIHEKVYQ 266 (577)
T ss_pred cCChhhhcCHHHHHHHhhhHHhh---------hhcccccChhHHHHHH--HhhccCccchhhHHHHHHHHHHHHHHHHHH
Confidence 1 1111111111110000 0000001111111100 000010000000 000100 111
Q ss_pred ccCChHHHHHHHHHHHHhC-------CCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCC---ChhHHHHHHHHHHhcCC
Q 048358 261 QLGSLELGEWIHMYCDKNH-------LLRRTVICNALIEMYIKCGCINQASQLFDQMVER---DVVSWSTVIGGLANHGK 330 (541)
Q Consensus 261 ~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~ 330 (541)
...........++.-++.- .+++..+|...+..-...|+.+.+.-+|+.+.-| -...|-..+.-....|+
T Consensus 267 ~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~ 346 (577)
T KOG1258|consen 267 KSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGD 346 (577)
T ss_pred hhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCc
Confidence 1112222222233222211 1134567888888889999999999999988665 23345444444455588
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHH---H
Q 048358 331 AHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQAL---N 407 (541)
Q Consensus 331 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~---~ 407 (541)
.+-|..++....+--++-.+.+-..-..-+...|++..|..+++.+.... +.-...-..-+....+.|..+.+. +
T Consensus 347 ~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~ 424 (577)
T KOG1258|consen 347 VSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNE 424 (577)
T ss_pred hhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHH
Confidence 88888888776665433333332222223456689999999999999853 333333344455667888888887 4
Q ss_pred HHHhC-CCCCCHHH----HHHHHHH-HhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 048358 408 IIEEM-PMKPDAKI----WGSLLSS-CRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHG 466 (541)
Q Consensus 408 ~~~~~-~~~p~~~~----~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 466 (541)
++... ..+-+..+ +.....- +.-.++.+.|..++.++.+..|++...|..+.+.....+
T Consensus 425 l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 425 LYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 54444 21222222 2222222 556789999999999999999999999999998877766
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.031 Score=42.83 Aligned_cols=139 Identities=13% Similarity=0.106 Sum_probs=80.6
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 048358 327 NHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQAL 406 (541)
Q Consensus 327 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 406 (541)
-.|..++..++..+.... .+..-++.++--....-+-+-..++++.+-+-+.+. .+|+.....
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKrVi 76 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKRVI 76 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THHHH
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHHHH
Confidence 356666666666666553 344555555544444445555555555554432111 223333333
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCc
Q 048358 407 NIIEEMPMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMK 484 (541)
Q Consensus 407 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 484 (541)
.-+-.++ .+.......+..+...|+-+.-.+++..+.+.+..+|..+..++.+|.+.|+..++.+++++.-++|+.
T Consensus 77 ~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 77 ECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3333332 234455566777889999999999999988777778999999999999999999999999999998864
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.011 Score=54.71 Aligned_cols=96 Identities=14% Similarity=0.120 Sum_probs=82.1
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 048358 386 IEHYGCLVDLLGRAGRLDQALNIIEEM-PMK-PDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYA 463 (541)
Q Consensus 386 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 463 (541)
..+++.+..+|.+.+++.+|++..+.. ..+ +|......=..+|...|+++.|+..|+++++++|.|..+-..|+.+-.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345778889999999999999999887 444 477888888899999999999999999999999999999999999888
Q ss_pred hcCCHHHH-HHHHHHhhhC
Q 048358 464 KHGRWEDV-SRMRKLIRSK 481 (541)
Q Consensus 464 ~~g~~~~A-~~~~~~m~~~ 481 (541)
+...+.+. .++|..|...
T Consensus 337 k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 87766655 7888888765
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0015 Score=46.58 Aligned_cols=62 Identities=16% Similarity=0.213 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHhccC----CC---CcchHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048358 419 KIWGSLLSSCRTYSNLEIAVIAMEHLLVLE----PE---DTGNYVLLSNIYAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 419 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 480 (541)
.+++.+...|...|++++|+..+++++++. ++ -..++..++.+|...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 567777778888888888888888887542 22 245778888899999999999998887653
|
... |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0046 Score=52.10 Aligned_cols=97 Identities=11% Similarity=0.100 Sum_probs=70.9
Q ss_pred HHHHhcC--CCCCcchHHHHHHHHHc-----CCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhcc--------
Q 048358 66 SLLFKQV--KEPNVFLYNAMIRAYTN-----NHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGL-------- 130 (541)
Q Consensus 66 ~~~~~~~--~~~~~~~~~~ll~~~~~-----~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~-------- 130 (541)
...|+.. ...+-.+|..+++.|.+ .|..+=....+..|.+.|+ .-|..+|+.|+..+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv-----~kDL~~Y~~LLDvFPKg~fvp~n~f 108 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGV-----EKDLEVYKALLDVFPKGKFVPRNFF 108 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCC-----cccHHHHHHHHHhCCCCCcccccHH
Confidence 3444444 33566667777766653 4666667777788888887 78888888888876542
Q ss_pred --------CCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCC
Q 048358 131 --------LCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDE 167 (541)
Q Consensus 131 --------~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 167 (541)
.+-+-|.+++++|...|+-||..++..|++.+++.+.
T Consensus 109 Q~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 109 QAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2344578999999999999999999999999887764
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.12 Score=44.90 Aligned_cols=166 Identities=12% Similarity=0.139 Sum_probs=91.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHccCC--C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHH
Q 048358 289 ALIEMYIKCGCINQASQLFDQMVE--R----DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPND--ITFIGLLSAC 360 (541)
Q Consensus 289 ~l~~~~~~~g~~~~A~~~~~~~~~--~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~ 360 (541)
.....+...|++.+|...|+.+.. | -..+.-.++.++.+.|+++.|...++++++.- |+. ..+...+.+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y--P~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY--PNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCcchhhHHHHHHH
Confidence 345556667777777777777733 2 12345556677778888888888888877642 222 1122222221
Q ss_pred h-------------ccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048358 361 A-------------HTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKPDAKIWGSLLSS 427 (541)
Q Consensus 361 ~-------------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~ 427 (541)
+ ..+....|...|+.+.+. |=......+|...+..+...--. --..+..-
T Consensus 88 ~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~----------------yP~S~y~~~A~~~l~~l~~~la~-~e~~ia~~ 150 (203)
T PF13525_consen 88 SYYKQIPGILRSDRDQTSTRKAIEEFEELIKR----------------YPNSEYAEEAKKRLAELRNRLAE-HELYIARF 150 (203)
T ss_dssp HHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-----------------TTSTTHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHhCccchhcccChHHHHHHHHHHHHHHHH----------------CcCchHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 1 112233445555555443 33333344444444333100000 11124455
Q ss_pred HhhcCCHHHHHHHHHHHhccCCCCc---chHHHHHHHHHhcCCHHHHHH
Q 048358 428 CRTYSNLEIAVIAMEHLLVLEPEDT---GNYVLLSNIYAKHGRWEDVSR 473 (541)
Q Consensus 428 ~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~ 473 (541)
|.+.|.+..|..-++.+++.-|+.+ .++..++.+|.+.|..+.|..
T Consensus 151 Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 151 YYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 8889999999999999999888854 466778888999998885543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.096 Score=45.50 Aligned_cols=135 Identities=14% Similarity=0.114 Sum_probs=93.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCC----CCcHhHHHHH
Q 048358 317 SWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHI----EHKIEHYGCL 392 (541)
Q Consensus 317 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~~l 392 (541)
+.+.++..+.-.+++.-....+.+.++..-+-++.....|.+.-.+.|+.+.|..+|+...+..+. ....-.....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 445667777778888888888888888765556677778888888889999999999877654322 2222222333
Q ss_pred HHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC
Q 048358 393 VDLLGRAGRLDQALNIIEEMP-MKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPED 451 (541)
Q Consensus 393 ~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (541)
...|.-++++..|...++++. .+| +....+.-.-+..-.|+...|++.++.+++..|..
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 445666778888888888873 223 44444554445566788888888888888887763
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0042 Score=57.06 Aligned_cols=126 Identities=13% Similarity=0.011 Sum_probs=66.1
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHH----hCCC-ccHhHHHHHHHHHHhcCCHHHHHHHHHccC-------CC--Chh
Q 048358 251 SIVSVLPACAQLGSLELGEWIHMYCDK----NHLL-RRTVICNALIEMYIKCGCINQASQLFDQMV-------ER--DVV 316 (541)
Q Consensus 251 ~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~--~~~ 316 (541)
.|..+-+.|.-.|+++.|....+.-.. .|-. .....+..+.+++.-.|+++.|.+.|+... .. ...
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 344555555556666666655443222 1211 112345566666666777777766665431 11 223
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 048358 317 SWSTVIGGLANHGKAHKAIHLFHEMQRL-----KVPPNDITFIGLLSACAHTGFWNEGLMYFDSM 376 (541)
Q Consensus 317 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 376 (541)
+..+|...|.-..++++|+.++.+-... ...-....+..|..+|...|.-++|+.+.+..
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4455666666666667776665543221 11223445666666666666666666554443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.002 Score=51.97 Aligned_cols=91 Identities=7% Similarity=-0.057 Sum_probs=68.5
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEE
Q 048358 423 SLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFV 502 (541)
Q Consensus 423 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~ 502 (541)
....-+...|++++|..+|.-+.-.+|-++..+..|+-++...|++++|...|...-..
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l--------------------- 100 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL--------------------- 100 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---------------------
Confidence 33444678999999999999999999999999999999999999999999999876543
Q ss_pred eCCCCCCChhHHHHHHHHHHHHHhcccCCcccccccC
Q 048358 503 SGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMYEDI 539 (541)
Q Consensus 503 ~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~i 539 (541)
.++++.+....|.-|..+|+.+.|.+-++.+|
T Consensus 101 -----~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~ 132 (165)
T PRK15331 101 -----LKNDYRPVFFTGQCQLLMRKAAKARQCFELVN 132 (165)
T ss_pred -----ccCCCCccchHHHHHHHhCCHHHHHHHHHHHH
Confidence 23444445555555555555555555444443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0027 Score=39.12 Aligned_cols=43 Identities=14% Similarity=0.258 Sum_probs=37.4
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHH
Q 048358 452 TGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLEL 520 (541)
Q Consensus 452 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~ 520 (541)
|.++..++..|.+.|++++|.++++++.+ .+|+++.++..|+.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~--------------------------~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALA--------------------------LDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------------HCcCCHHHHHHhhh
Confidence 45788999999999999999999999876 46888888888775
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.012 Score=49.63 Aligned_cols=89 Identities=10% Similarity=0.098 Sum_probs=63.1
Q ss_pred CCCcchHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcc----------------CChHHHH
Q 048358 211 YTTIVSWTAMISGYTH-----IGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQL----------------GSLELGE 269 (541)
Q Consensus 211 ~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~----------------~~~~~a~ 269 (541)
..+-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.|+..+-+. .+.+-|.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 3444555555555543 356666667777888888888888888888776542 2345678
Q ss_pred HHHHHHHHhCCCccHhHHHHHHHHHHhcCC
Q 048358 270 WIHMYCDKNHLLRRTVICNALIEMYIKCGC 299 (541)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 299 (541)
+++++|...|+-||..++..+++.+.+.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 888888888888888888888888776554
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.78 Score=45.84 Aligned_cols=106 Identities=8% Similarity=0.094 Sum_probs=50.6
Q ss_pred cHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCC
Q 048358 119 TLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQ 198 (541)
Q Consensus 119 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 198 (541)
.|+.+...++....++.|.+.+..--. ....+.++.+..++++-+.+.+.+++ +....-.+...+.+.|.
T Consensus 798 A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGM 867 (1189)
T KOG2041|consen 798 AFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGM 867 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhch
Confidence 445555555555555555444432211 11234444444444444444444433 23344455566666666
Q ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 048358 199 MKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQ 239 (541)
Q Consensus 199 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 239 (541)
-++|.+.|-+-..|. .-+..|...++|.+|.++-+.
T Consensus 868 C~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 868 CDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred HHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHHh
Confidence 666666665554432 223445555555555555444
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.03 Score=43.76 Aligned_cols=52 Identities=17% Similarity=0.186 Sum_probs=38.7
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHH
Q 048358 345 KVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLL 396 (541)
Q Consensus 345 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 396 (541)
...|+..+..+++.+|+..|++..|.++.+...+.++++.+..+|..|+.=.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3567777778888888888888888888888877777777777777776543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.63 Score=43.99 Aligned_cols=406 Identities=12% Similarity=0.076 Sum_probs=223.8
Q ss_pred HHHHHhcCCC--CCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHH
Q 048358 65 ASLLFKQVKE--PNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAH 142 (541)
Q Consensus 65 A~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 142 (541)
-+++=+++.+ .|..+|-.|+.-+..+|..++..+++++|..-- +--+..|..-+++-....++.....+|.+
T Consensus 28 ~lrLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pf------p~~~~aw~ly~s~ELA~~df~svE~lf~r 101 (660)
T COG5107 28 ELRLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPF------PIMEHAWRLYMSGELARKDFRSVESLFGR 101 (660)
T ss_pred HHHHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCC------ccccHHHHHHhcchhhhhhHHHHHHHHHH
Confidence 3466666665 467799999999999999999999999997532 44456777777777777889999999998
Q ss_pred HHHhCCCCchhhHHHHHHHHHcCCCh------HHHHHHHhhcCC------CChhhHHHHHHHH---H------hcCCHHH
Q 048358 143 VCKFGLKSHSITENALLDLYGKCDEL------IEAHKVFEEMTD------RDIVAWNNLISGY---A------RLGQMKK 201 (541)
Q Consensus 143 ~~~~g~~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~------~~~~~~~~l~~~~---~------~~~~~~~ 201 (541)
.+...+ +...|...+.--.+.+.. ....+.|+-... .+...|+..+.-+ - ++.+++.
T Consensus 102 CL~k~l--~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~ 179 (660)
T COG5107 102 CLKKSL--NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDK 179 (660)
T ss_pred HHhhhc--cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHH
Confidence 887654 455566555544443311 111222222222 2333444433221 2 2334455
Q ss_pred HHHHHhcCCCC---Cc-------chHHHHHHH-----HHh--cCChHHHHHHHHHHHH--CCCCC----ChHHHHHHHHH
Q 048358 202 ARMLFDKMPYT---TI-------VSWTAMISG-----YTH--IGSYAEALDVFRQMQM--VGIEP----DEISIVSVLPA 258 (541)
Q Consensus 202 A~~~~~~~~~~---~~-------~~~~~l~~~-----~~~--~g~~~~A~~~~~~m~~--~~~~p----~~~~~~~ll~~ 258 (541)
..+.+.++... +. ..|..=+.- +.. +--+-.|...+++... .|... +..|++.+-+.
T Consensus 180 iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~ 259 (660)
T COG5107 180 IRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAART 259 (660)
T ss_pred HHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhcccccc
Confidence 56666666532 11 111111111 110 1124455556665543 23221 23333332210
Q ss_pred -HH---------c------cCC-h-HHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHH
Q 048358 259 -CA---------Q------LGS-L-ELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERDVVSWST 320 (541)
Q Consensus 259 -~~---------~------~~~-~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 320 (541)
++ + .|+ . ....-++++.... +...+.+|---...+...++-+.|......-..-.+..-.-
T Consensus 260 s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~ 338 (660)
T COG5107 260 SDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMF 338 (660)
T ss_pred ccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchhee
Confidence 00 0 000 0 1111112222211 11223344433444455677777777766553321111111
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh--------------CCC---------------CCCHHHHHHHHHHHhccCcHHHHHH
Q 048358 321 VIGGLANHGKAHKAIHLFHEMQR--------------LKV---------------PPNDITFIGLLSACAHTGFWNEGLM 371 (541)
Q Consensus 321 l~~~~~~~~~~~~a~~~~~~m~~--------------~~~---------------~p~~~~~~~l~~~~~~~g~~~~a~~ 371 (541)
+...|--.++.+.....|+...+ .+. .--...|...+++-.+..-++.|..
T Consensus 339 lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~ 418 (660)
T COG5107 339 LSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARK 418 (660)
T ss_pred HHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHH
Confidence 11112222222222222211100 011 1112356667777778888999999
Q ss_pred HHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHH-HHHHHHHhhcCCHHHHHHHHHHHhccCC
Q 048358 372 YFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPDAKIW-GSLLSSCRTYSNLEIAVIAMEHLLVLEP 449 (541)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 449 (541)
+|-++.+..-+.+++..+++++..++ .|+...|.++|+-- ..-||...| ...+.-+...++-+.|..+|+..++.-.
T Consensus 419 ~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~ 497 (660)
T COG5107 419 LFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLE 497 (660)
T ss_pred HHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHH
Confidence 99999986447788888999988775 57888999999865 445665544 4455567788999999999997765332
Q ss_pred C--CcchHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048358 450 E--DTGNYVLLSNIYAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 450 ~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 480 (541)
. -...|..++..-..-|+...+..+=++|.+
T Consensus 498 ~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 498 KTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 2 256788888888888998887766666644
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.067 Score=42.29 Aligned_cols=74 Identities=16% Similarity=0.262 Sum_probs=49.0
Q ss_pred HHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcc---hHHHHHHHHHh
Q 048358 393 VDLLGRAGRLDQALNIIEEM----PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTG---NYVLLSNIYAK 464 (541)
Q Consensus 393 ~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~ 464 (541)
.....+.|++++|.+.|+.+ +..| ....-..++.++.+.+++++|...+++.+++.|.++. ++...+.++.+
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 34445677888888888777 2222 3455666778888888888888888888888887655 33333333444
Q ss_pred cC
Q 048358 465 HG 466 (541)
Q Consensus 465 ~g 466 (541)
..
T Consensus 97 ~~ 98 (142)
T PF13512_consen 97 QD 98 (142)
T ss_pred Hh
Confidence 43
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0047 Score=43.95 Aligned_cols=60 Identities=25% Similarity=0.296 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 048358 387 EHYGCLVDLLGRAGRLDQALNIIEEM-------P-MKPD-AKIWGSLLSSCRTYSNLEIAVIAMEHLLV 446 (541)
Q Consensus 387 ~~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 446 (541)
.+++.+...|...|++++|++.|++. + ..|+ ..++..+...+...|++++|++.++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34555666666666666666655554 1 1122 34566666667777777777777776654
|
... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.013 Score=47.80 Aligned_cols=62 Identities=24% Similarity=0.303 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048358 419 KIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 419 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 480 (541)
.+...++..+...|++++|...+++++..+|-+...|..++.+|...|+..+|.++|+++..
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34556677788899999999999999999999999999999999999999999999988753
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.69 Score=42.92 Aligned_cols=272 Identities=17% Similarity=0.149 Sum_probs=130.6
Q ss_pred CCchHHHHHHHHHHHhCCCCchhhHHHHHHH--HHcCCChHHHHHHHhhcCC-CChh--hHHHHHHHHHhcCCHHHHHHH
Q 048358 131 LCPSLGKQIHAHVCKFGLKSHSITENALLDL--YGKCDELIEAHKVFEEMTD-RDIV--AWNNLISGYARLGQMKKARML 205 (541)
Q Consensus 131 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~-~~~~--~~~~l~~~~~~~~~~~~A~~~ 205 (541)
|+-..|.+.-.+..+. +..|....-.|+.+ -.-.|+++.|.+-|+.|.. |... -...|.-...+.|..+.|...
T Consensus 98 Gda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~y 176 (531)
T COG3898 98 GDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHY 176 (531)
T ss_pred CchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHH
Confidence 4555554444333221 23333333333322 2345777777777777765 2211 112222233345666666665
Q ss_pred HhcCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCChHH--HHHHHHHHH---ccCChHHHHHHHHHHH
Q 048358 206 FDKMPYT---TIVSWTAMISGYTHIGSYAEALDVFRQMQMVG-IEPDEIS--IVSVLPACA---QLGSLELGEWIHMYCD 276 (541)
Q Consensus 206 ~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~--~~~ll~~~~---~~~~~~~a~~~~~~~~ 276 (541)
-+..... -...+...+...+..|+|+.|+++++.-.... +.++..- -..++.+-. -..+...|...-.+..
T Consensus 177 Ae~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~ 256 (531)
T COG3898 177 AERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEAN 256 (531)
T ss_pred HHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Confidence 5554322 23567777788888888888888887665432 3333321 122222211 1122333333333333
Q ss_pred HhCCCccHh-HHHHHHHHHHhcCCHHHHHHHHHccCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCC-CHH
Q 048358 277 KNHLLRRTV-ICNALIEMYIKCGCINQASQLFDQMVE--RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRL-KVPP-NDI 351 (541)
Q Consensus 277 ~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p-~~~ 351 (541)
+. .|+.. .--.-..++.+.|+..++-.+++.+-+ |.+..+ ++-.+.+.|+ .+..-+++.... .++| |..
T Consensus 257 KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia--~lY~~ar~gd--ta~dRlkRa~~L~slk~nnae 330 (531)
T COG3898 257 KL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA--LLYVRARSGD--TALDRLKRAKKLESLKPNNAE 330 (531)
T ss_pred hc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH--HHHHHhcCCC--cHHHHHHHHHHHHhcCccchH
Confidence 32 23221 112234566667777777777666633 222222 2222333343 222222222110 1223 344
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHh-cCCHHHHHHHHHhC
Q 048358 352 TFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGR-AGRLDQALNIIEEM 412 (541)
Q Consensus 352 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~ 412 (541)
+...+..+....|++..|..--+.... ..|....|..|.+.-.. .|+-.++..++-+.
T Consensus 331 s~~~va~aAlda~e~~~ARa~Aeaa~r---~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 331 SSLAVAEAALDAGEFSAARAKAEAAAR---EAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHhh---hCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 555566666666777666665555543 35666666666655443 36666666666555
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.02 Score=54.25 Aligned_cols=63 Identities=10% Similarity=-0.035 Sum_probs=51.9
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcH----hHHHHHHHHHHhcCCHHHHHHHHHhC
Q 048358 347 PPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKI----EHYGCLVDLLGRAGRLDQALNIIEEM 412 (541)
Q Consensus 347 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~ 412 (541)
+.+...++.+..+|...|++++|+..|+...+. .|+. .+|..+..+|...|+.++|++.+++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455678888899999999999999999998864 3442 35888999999999999999998887
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.3 Score=43.56 Aligned_cols=120 Identities=14% Similarity=0.103 Sum_probs=82.9
Q ss_pred HHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHhhcCCHH
Q 048358 359 ACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKPDAKIWGS---LLSSCRTYSNLE 435 (541)
Q Consensus 359 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~~~~~ 435 (541)
.....|++..|..+|+...... +-+...-..++.+|...|+.+.|..++..++.+-....+.. -+..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 4556788899999888887743 44455567788899999999999999999865443333333 222333333333
Q ss_pred HHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 436 IAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 436 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
+...+- +-...+|+|...-..++..+...|+.++|.+.+=.+..+
T Consensus 221 ~~~~l~-~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 221 EIQDLQ-RRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CHHHHH-HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 333222 223457989999999999999999999999877666554
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.41 E-value=1.2 Score=44.56 Aligned_cols=216 Identities=10% Similarity=0.016 Sum_probs=104.5
Q ss_pred ChHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHH----------HHhcc
Q 048358 61 DLAYASLLFKQVKEPNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIK----------SCAGL 130 (541)
Q Consensus 61 ~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~----------~~~~~ 130 (541)
.+++|.+..+. .|-+..|..+.......-.++.|...|-+.... |.......|-. .-+--
T Consensus 678 gledA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY--------~Gik~vkrl~~i~s~~~q~aei~~~~ 747 (1189)
T KOG2041|consen 678 GLEDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY--------AGIKLVKRLRTIHSKEQQRAEISAFY 747 (1189)
T ss_pred chHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc--------cchhHHHHhhhhhhHHHHhHhHhhhh
Confidence 34555555543 255567777776666666666666666554332 11111111111 11123
Q ss_pred CCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCCC-----ChhhHHHHHHHHHhcCCHHHHHHH
Q 048358 131 LCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDR-----DIVAWNNLISGYARLGQMKKARML 205 (541)
Q Consensus 131 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~ 205 (541)
|.+++|.+++-++-+++ ..+..+.+.||+-...++++.-... -..+|+.+...+.....|++|.+.
T Consensus 748 g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred cchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666665544332 1345555666666666665543221 123566666666666666666666
Q ss_pred HhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHh
Q 048358 206 FDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTV 285 (541)
Q Consensus 206 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 285 (541)
|..-.. -...+.++.+...+++-..+.+.+ +.+....-.+...+.+.|.-++|.+.+-.. +. |
T Consensus 819 Y~~~~~-----~e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~-p--- 881 (1189)
T KOG2041|consen 819 YSYCGD-----TENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRR---SL-P--- 881 (1189)
T ss_pred HHhccc-----hHhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhc---cC-c---
Confidence 655431 122444555544444444333332 333344445555556666555554443211 11 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHccCCCC
Q 048358 286 ICNALIEMYIKCGCINQASQLFDQMVERD 314 (541)
Q Consensus 286 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 314 (541)
...+..|...++|.+|.++-+...-|.
T Consensus 882 --kaAv~tCv~LnQW~~avelaq~~~l~q 908 (1189)
T KOG2041|consen 882 --KAAVHTCVELNQWGEAVELAQRFQLPQ 908 (1189)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 123344555566666666655554443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.32 Score=41.94 Aligned_cols=114 Identities=13% Similarity=0.093 Sum_probs=74.4
Q ss_pred ccCcHHHHHHHHHHhhhhc----CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCC-------CCCCH-HHHHHHHHHHh
Q 048358 362 HTGFWNEGLMYFDSMKRDH----HIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMP-------MKPDA-KIWGSLLSSCR 429 (541)
Q Consensus 362 ~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~~-~~~~~l~~~~~ 429 (541)
...+++.|+++|++..... ....-...+....+.+++..++++|-..+.+-+ -.|+. ..|...|-.+.
T Consensus 122 env~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L 201 (308)
T KOG1585|consen 122 ENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYL 201 (308)
T ss_pred hcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHh
Confidence 3456677777776654321 111223446667778888888888877665542 12333 44556666677
Q ss_pred hcCCHHHHHHHHHHHhccC----CCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 048358 430 TYSNLEIAVIAMEHLLVLE----PEDTGNYVLLSNIYAKHGRWEDVSRMRK 476 (541)
Q Consensus 430 ~~~~~~~a~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 476 (541)
...++..|...++...++. +++..+...|+.+| ..|+.+++..+..
T Consensus 202 ~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 202 YAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred hHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 7889999999998866543 66777888888776 4578888776653
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.039 Score=43.56 Aligned_cols=81 Identities=20% Similarity=0.167 Sum_probs=63.8
Q ss_pred HHHHHhhcCCHHHHHHHHHHHhccCCCC---cchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEE
Q 048358 424 LLSSCRTYSNLEIAVIAMEHLLVLEPED---TGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQE 500 (541)
Q Consensus 424 l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~ 500 (541)
-.....+.|++++|++.|+.+....|-. ..+-..|+.+|.+.|++++|...+++..+..+
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP----------------- 78 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP----------------- 78 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-----------------
Confidence 3444568899999999999999877664 45777899999999999999999999887643
Q ss_pred EEeCCCCCCChhHHHHHHHHHHHHHhc
Q 048358 501 FVSGDDTKPFLKDIFWLLELLALHQDR 527 (541)
Q Consensus 501 ~~~~~~~~p~~~~~~~~l~~~~~~~~~ 527 (541)
.||+..-++.+.|-.+..+..
T Consensus 79 ------~hp~vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 79 ------THPNVDYAYYMRGLSYYEQDE 99 (142)
T ss_pred ------CCCCccHHHHHHHHHHHHHhh
Confidence 466666667777766666654
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.30 E-value=1.5 Score=44.41 Aligned_cols=105 Identities=18% Similarity=0.135 Sum_probs=58.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhc
Q 048358 320 TVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRA 399 (541)
Q Consensus 320 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 399 (541)
--+.-+...|+..+|.++-.+.+ -||-..|-.=+.++...+++++-+++-+... ++.-|.-++.+|.+.
T Consensus 689 dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk-------sPIGy~PFVe~c~~~ 757 (829)
T KOG2280|consen 689 DTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK-------SPIGYLPFVEACLKQ 757 (829)
T ss_pred HHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC-------CCCCchhHHHHHHhc
Confidence 33444555566666666655443 3555555555666666666665444433322 133355566677777
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Q 048358 400 GRLDQALNIIEEMPMKPDAKIWGSLLSSCRTYSNLEIAVIAM 441 (541)
Q Consensus 400 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 441 (541)
|+.++|.+++.+.+--+ -...+|.+.|++.+|.++.
T Consensus 758 ~n~~EA~KYiprv~~l~------ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 758 GNKDEAKKYIPRVGGLQ------EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred ccHHHHhhhhhccCChH------HHHHHHHHhccHHHHHHHH
Confidence 77777777776664222 3445566666666665543
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.038 Score=48.56 Aligned_cols=96 Identities=18% Similarity=0.206 Sum_probs=44.8
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCc---HhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHH
Q 048358 353 FIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHK---IEHYGCLVDLLGRAGRLDQALNIIEEM----PMKP-DAKIWGSL 424 (541)
Q Consensus 353 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l 424 (541)
|+.-+.. .+.|++..|.+.|....+.+ |.+ ...+-.|..++...|++++|..+|..+ +..| -+..+..+
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 4443333 33455666666666665532 221 122334555555555555555555444 2122 12334444
Q ss_pred HHHHhhcCCHHHHHHHHHHHhccCCCC
Q 048358 425 LSSCRTYSNLEIAVIAMEHLLVLEPED 451 (541)
Q Consensus 425 ~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (541)
.....+.|+.++|...|+++.+..|..
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 444445555555555555555555544
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.013 Score=44.68 Aligned_cols=89 Identities=19% Similarity=0.192 Sum_probs=59.6
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC----cchHHHHHHHHHhcCC
Q 048358 394 DLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPED----TGNYVLLSNIYAKHGR 467 (541)
Q Consensus 394 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~ 467 (541)
-++...|+.+.|++.|... .+-| ....|+.-..++.-.|+.++|++-+++++++..+. ..+|..-+..|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3456677777777777665 3333 56677777777777777777777777777765332 2245556666777777
Q ss_pred HHHHHHHHHHhhhCC
Q 048358 468 WEDVSRMRKLIRSKS 482 (541)
Q Consensus 468 ~~~A~~~~~~m~~~~ 482 (541)
-+.|..-|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777777777766555
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.059 Score=43.89 Aligned_cols=70 Identities=23% Similarity=0.322 Sum_probs=39.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhh----hcCCCCcHhH
Q 048358 318 WSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKR----DHHIEHKIEH 388 (541)
Q Consensus 318 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~ 388 (541)
...++..+...|++++|..+++.+.... |.+...+..++.+|...|+...|.++|+.+.+ ..|++|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3445555666677777777777766665 55666677777777777777777777665532 3456666553
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.95 E-value=1.1 Score=39.56 Aligned_cols=195 Identities=22% Similarity=0.216 Sum_probs=101.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHccCC-----CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH-
Q 048358 285 VICNALIEMYIKCGCINQASQLFDQMVE-----RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLS- 358 (541)
Q Consensus 285 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~- 358 (541)
..+......+...+++..+...+..... .....+......+...+++..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 3444445555555555555555544321 233344444445555555666666666555543222 111122222
Q ss_pred HHhccCcHHHHHHHHHHhhhhcCC--CCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHhhcCC
Q 048358 359 ACAHTGFWNEGLMYFDSMKRDHHI--EHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPD--AKIWGSLLSSCRTYSN 433 (541)
Q Consensus 359 ~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~~~ 433 (541)
.+...|+++.+...+...... .. ......+......+...++.+.+...+... ...++ ...+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 455666666666666665331 10 112223333333355566666666666665 32333 4555556666666666
Q ss_pred HHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 434 LEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 434 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
++.|...+.......|.....+..+...+...|.++++...+.+....
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777777777766666654445555555555555666666666665543
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.93 Score=40.59 Aligned_cols=171 Identities=14% Similarity=0.118 Sum_probs=109.3
Q ss_pred HHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcC
Q 048358 302 QASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHH 381 (541)
Q Consensus 302 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 381 (541)
...++++....+....-..-.......|++.+|..+|....... +-+...-..++.+|...|+.+.|..++..+..+.
T Consensus 121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~- 198 (304)
T COG3118 121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQA- 198 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccc-
Confidence 44445555544322222223344567788899999888887764 4455667778888999999999999998876531
Q ss_pred CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccC--CCCcchHHHH
Q 048358 382 IEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLE--PEDTGNYVLL 458 (541)
Q Consensus 382 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~l 458 (541)
-.........-+..+.+.....+...+-.+..-.| |...-..+...+...|+.+.|.+.+-.+++.+ -.+...-..+
T Consensus 199 ~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~l 278 (304)
T COG3118 199 QDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTL 278 (304)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHH
Confidence 11111111223455555555555555555554456 66666777788889999999998887777654 4566778888
Q ss_pred HHHHHhcCCHHHHHHH
Q 048358 459 SNIYAKHGRWEDVSRM 474 (541)
Q Consensus 459 ~~~~~~~g~~~~A~~~ 474 (541)
+..+.--|.-+.+...
T Consensus 279 le~f~~~g~~Dp~~~~ 294 (304)
T COG3118 279 LELFEAFGPADPLVLA 294 (304)
T ss_pred HHHHHhcCCCCHHHHH
Confidence 8888877754444433
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.0029 Score=36.29 Aligned_cols=30 Identities=20% Similarity=0.184 Sum_probs=26.9
Q ss_pred CCCCCCChhHHHHHHHHHHHHHhcccCCcc
Q 048358 504 GDDTKPFLKDIFWLLELLALHQDRAKDVID 533 (541)
Q Consensus 504 ~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 533 (541)
.++++|+++.++..||.+|...|+.++|++
T Consensus 5 Aie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 5 AIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred HHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 346899999999999999999999999863
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.41 Score=45.01 Aligned_cols=174 Identities=12% Similarity=0.060 Sum_probs=93.9
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHhcCCCC-Cc------chHHHHHHHHHc---CCChhHHHHHHHHhhhCCCCCCCCCCC
Q 048358 47 FLVTKMIDVCNSGGDLAYASLLFKQVKEP-NV------FLYNAMIRAYTN---NHLYGLAINLYKQMLRDPRTGSLILPD 116 (541)
Q Consensus 47 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~------~~~~~ll~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~p~ 116 (541)
.+...++-.|-...+++...++++.+... +- ..--...-++.+ .|+.++|++++..+..... .++
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~-----~~~ 216 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDE-----NPD 216 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccC-----CCC
Confidence 33444555677778888888888887752 11 111122334455 7888888888888554444 778
Q ss_pred cccHHHHHHHHhcc---------CCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHH
Q 048358 117 KFTLPFVIKSCAGL---------LCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWN 187 (541)
Q Consensus 117 ~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 187 (541)
+.+|..+.+.|-.. ...+.|...|.+.-+. .|+...--.++..+...|.-.+...-++++. ..++
T Consensus 217 ~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~----~~l~ 290 (374)
T PF13281_consen 217 PDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIG----VKLS 290 (374)
T ss_pred hHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHH----HHHH
Confidence 88888887765421 1244555555444332 2333322233333333333222111111110 0111
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048358 188 NLISGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMV 243 (541)
Q Consensus 188 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 243 (541)
...++.|..+. ..+-..+.+++.++.-.|+.++|.+.+++|...
T Consensus 291 ---~llg~kg~~~~---------~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 291 ---SLLGRKGSLEK---------MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ---HHHHhhccccc---------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 11112221111 234456778888999999999999999999876
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.83 Score=45.31 Aligned_cols=160 Identities=12% Similarity=0.050 Sum_probs=101.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCH-----HHHHHHHHHHh----ccCcHHHHHHHHHHhhhhcCCCCcHhH
Q 048358 319 STVIGGLANHGKAHKAIHLFHEMQRLK-VPPND-----ITFIGLLSACA----HTGFWNEGLMYFDSMKRDHHIEHKIEH 388 (541)
Q Consensus 319 ~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~-----~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~ 388 (541)
..++....-.|+-+.+++.+.+..+.+ ++-.. -.|..++..++ ...+.+.|.++++.+.+.+ |+...
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P~s~l 268 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---PNSAL 268 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---CCcHH
Confidence 344444555666677776666654432 11111 12333333322 2467788999999998854 55544
Q ss_pred HH-HHHHHHHhcCCHHHHHHHHHhCC-CC-----CCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHH-HHHH
Q 048358 389 YG-CLVDLLGRAGRLDQALNIIEEMP-MK-----PDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYV-LLSN 460 (541)
Q Consensus 389 ~~-~l~~~~~~~g~~~~A~~~~~~~~-~~-----p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~l~~ 460 (541)
|. .-.+.+...|+.++|++.|++.- .+ .....+.-+...+....++++|...+.++.+.+.-+...|. ..+-
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 43 34456677899999999999752 11 12344455556678889999999999999986655444444 3445
Q ss_pred HHHhcCCH-------HHHHHHHHHhhhC
Q 048358 461 IYAKHGRW-------EDVSRMRKLIRSK 481 (541)
Q Consensus 461 ~~~~~g~~-------~~A~~~~~~m~~~ 481 (541)
++...|+. ++|.+++++++..
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 56677888 8888888887654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.16 Score=39.72 Aligned_cols=47 Identities=19% Similarity=0.327 Sum_probs=31.3
Q ss_pred CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHH
Q 048358 381 HIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM----PMKPDAKIWGSLLSS 427 (541)
Q Consensus 381 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~ 427 (541)
...|+..+..+++.+|+..|++..|+++++.. +++-+...|..|+.-
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 45566777777777777777777777766665 444456667666664
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.63 E-value=1.1 Score=38.14 Aligned_cols=162 Identities=16% Similarity=0.150 Sum_probs=90.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHH
Q 048358 315 VVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVD 394 (541)
Q Consensus 315 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 394 (541)
+.+||-+.--+...|+++.|.+.|+...+.+ +....+...-.-++.-.|++..|.+-+...-+.....|-...|..++.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD-p~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E 177 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE 177 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccC-CcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 4567777777778888888888888887765 222222222222333457888887776666554333333333333322
Q ss_pred HHHhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC-------cchHHHHHHHHHhcC
Q 048358 395 LLGRAGRLDQALNI-IEEMPMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPED-------TGNYVLLSNIYAKHG 466 (541)
Q Consensus 395 ~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g 466 (541)
+.-++.+|..- .++.. ..|..-|...+-.+.- |++. ...+++++..-..++ .++|..|+.-+...|
T Consensus 178 ---~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 178 ---QKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred ---hhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 23345566543 34432 2333333333332211 1111 122333333322222 458889999999999
Q ss_pred CHHHHHHHHHHhhhCCC
Q 048358 467 RWEDVSRMRKLIRSKSM 483 (541)
Q Consensus 467 ~~~~A~~~~~~m~~~~~ 483 (541)
+.++|..+|+-....++
T Consensus 252 ~~~~A~~LfKLaiannV 268 (297)
T COG4785 252 DLDEATALFKLAVANNV 268 (297)
T ss_pred cHHHHHHHHHHHHHHhH
Confidence 99999999998876654
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.28 Score=46.90 Aligned_cols=64 Identities=11% Similarity=0.034 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048358 417 DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 417 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 480 (541)
|......+..+....++++.|...|+++..++|+.+.+|...+....-.|+.++|.+.+++..+
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 4444444555455555566666666666666666666666666666666666666666666443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.2 Score=45.73 Aligned_cols=122 Identities=16% Similarity=0.138 Sum_probs=61.5
Q ss_pred HHHHHhccCcHHHHHHHHHHhhhhcCCCC----cHhHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCHH-----
Q 048358 356 LLSACAHTGFWNEGLMYFDSMKRDHHIEH----KIEHYGCLVDLLGRAGRLDQALNIIEEM-------PMKPDAK----- 419 (541)
Q Consensus 356 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~----- 419 (541)
+..++...+.++++++.|+...+--.-.. ...++-.|...|.+..++++|.-+..+. +++.-..
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 44555555666666666665543211111 1234556666666666666655444333 2221111
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHhccC------CCCcchHHHHHHHHHhcCCHHHHHHHHHH
Q 048358 420 IWGSLLSSCRTYSNLEIAVIAMEHLLVLE------PEDTGNYVLLSNIYAKHGRWEDVSRMRKL 477 (541)
Q Consensus 420 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 477 (541)
....|.-++...|..-.|.+..+++.++. +-.......++++|...|+.|.|..-|+.
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 22233344666666666666666655432 12233444566666666666666554443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.52 E-value=1.6 Score=38.42 Aligned_cols=221 Identities=19% Similarity=0.154 Sum_probs=144.5
Q ss_pred CChHHHHHHHHHHHHCCCC-CChHHHHHHHHHHHccCChHHHHHHHHHHHHh-CCCccHhHHHHHHHHHHhcCCHHHHHH
Q 048358 228 GSYAEALDVFRQMQMVGIE-PDEISIVSVLPACAQLGSLELGEWIHMYCDKN-HLLRRTVICNALIEMYIKCGCINQASQ 305 (541)
Q Consensus 228 g~~~~A~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~ 305 (541)
+....+...+......... .....+......+...+.+..+...+...... ........+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444454444433211 12345555556666666666666666655542 223345556666777777777888888
Q ss_pred HHHccCC--CCh-hHHHHHHH-HHHhcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhh
Q 048358 306 LFDQMVE--RDV-VSWSTVIG-GLANHGKAHKAIHLFHEMQRLKV--PPNDITFIGLLSACAHTGFWNEGLMYFDSMKRD 379 (541)
Q Consensus 306 ~~~~~~~--~~~-~~~~~l~~-~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 379 (541)
.+..... ++. ........ .+...|+++.|...+.+...... ......+......+...++++.+...+......
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 196 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL 196 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence 8877754 222 22333333 68888999999999998865321 123334444444566788999999999999874
Q ss_pred cCCCC-cHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC
Q 048358 380 HHIEH-KIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPD-AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPE 450 (541)
Q Consensus 380 ~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 450 (541)
.+. ....+..+...+...++++.|...+... ...|+ ...+..+...+...+..+.+...+.+..+..|.
T Consensus 197 --~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 197 --NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred --CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 244 4677888888999999999999998887 44554 455555555555777899999999999988876
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=95.47 E-value=3.7 Score=42.48 Aligned_cols=115 Identities=8% Similarity=0.016 Sum_probs=54.2
Q ss_pred CcHHHHHHHHHHhhhhcCCCCcH--hHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHhhcCCHHHHHHH
Q 048358 364 GFWNEGLMYFDSMKRDHHIEHKI--EHYGCLVDLLGRAGRLDQALNIIEEMP-MKPDAKIWGSLLSSCRTYSNLEIAVIA 440 (541)
Q Consensus 364 g~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~ 440 (541)
.+.+.|...+........+.+.. ..+..+.......+...+|...++... ...+.....--+......++++.+...
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~ 334 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTW 334 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHH
Confidence 34456666666554333332222 122333322333322445555555541 112333333333343456666666665
Q ss_pred HHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHh
Q 048358 441 MEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLI 478 (541)
Q Consensus 441 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 478 (541)
+..+-...........-+++++...|+.++|...|+.+
T Consensus 335 i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 335 LARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55554333334445555666666666666666666665
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.91 Score=43.58 Aligned_cols=144 Identities=13% Similarity=0.089 Sum_probs=87.0
Q ss_pred hHHHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhc---------cCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhc
Q 048358 331 AHKAIHLFHEMQRL-KVPPN-DITFIGLLSACAH---------TGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRA 399 (541)
Q Consensus 331 ~~~a~~~~~~m~~~-~~~p~-~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 399 (541)
.+.|+.+|.+.... .+.|+ ...|..+..++.. ..+..+|.++-+...+.. +.|......+..+..-.
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld--~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT--TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhh
Confidence 45666677777621 12333 3344444333321 234555666666666532 45666666677777777
Q ss_pred CCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcc--hHHHHHHHHHhcCCHHHHHHHH
Q 048358 400 GRLDQALNIIEEM-PMKPDA-KIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTG--NYVLLSNIYAKHGRWEDVSRMR 475 (541)
Q Consensus 400 g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~ 475 (541)
|+++.|..+|++. ...||. .+|......+.-.|+.++|.+.++++++++|.... .....++.|... ..++|..++
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 430 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLY 430 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHH
Confidence 7788888888887 566753 55555555566788888888888888888887533 333334455555 456666655
Q ss_pred HH
Q 048358 476 KL 477 (541)
Q Consensus 476 ~~ 477 (541)
-+
T Consensus 431 ~~ 432 (458)
T PRK11906 431 YK 432 (458)
T ss_pred hh
Confidence 43
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.21 Score=38.33 Aligned_cols=93 Identities=16% Similarity=0.074 Sum_probs=73.2
Q ss_pred HHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCC--CHHHHHHHHHHHhhc
Q 048358 358 SACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM----PMKP--DAKIWGSLLSSCRTY 431 (541)
Q Consensus 358 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p--~~~~~~~l~~~~~~~ 431 (541)
-+....|+.+.|++.|.....- .|.....||.-..++.-+|+.++|++-+++. +-+. --..|..-...|...
T Consensus 51 valaE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 3567889999999999998863 4677888999999999999999999988876 2111 123344444458899
Q ss_pred CCHHHHHHHHHHHhccCCCCc
Q 048358 432 SNLEIAVIAMEHLLVLEPEDT 452 (541)
Q Consensus 432 ~~~~~a~~~~~~~~~~~~~~~ 452 (541)
|+.+.|..-|+.+.+++.+-.
T Consensus 129 g~dd~AR~DFe~AA~LGS~FA 149 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGSKFA 149 (175)
T ss_pred CchHHHHHhHHHHHHhCCHHH
Confidence 999999999999999886643
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.71 Score=41.89 Aligned_cols=153 Identities=10% Similarity=0.016 Sum_probs=74.4
Q ss_pred cCCHHHHHHHHHccCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHhccCcHHHH
Q 048358 297 CGCINQASQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDI----TFIGLLSACAHTGFWNEG 369 (541)
Q Consensus 297 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~g~~~~a 369 (541)
.|+..+|-..++++.+ .|..+++-.-.+|...|+...-...+++....- .|+.. .-..+..++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 4555555555555543 244555555566666666666666666655431 22221 112223334455666666
Q ss_pred HHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC------HHHHHHHHHHHhhcCCHHHHHHHHHH
Q 048358 370 LMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKPD------AKIWGSLLSSCRTYSNLEIAVIAMEH 443 (541)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~------~~~~~~l~~~~~~~~~~~~a~~~~~~ 443 (541)
.+.-++..+-+ +.|.-...++...+...|+..++.++..+-...-+ ...|-...-.+...+.++.|+++|++
T Consensus 195 Ek~A~ralqiN--~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 195 EKQADRALQIN--RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHhhccCC--CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 66666655432 33333445555566666666666666655421111 01111111223344666666666654
Q ss_pred Hh--ccCCCCc
Q 048358 444 LL--VLEPEDT 452 (541)
Q Consensus 444 ~~--~~~~~~~ 452 (541)
-+ +++.+|.
T Consensus 273 ei~k~l~k~Da 283 (491)
T KOG2610|consen 273 EIWKRLEKDDA 283 (491)
T ss_pred HHHHHhhccch
Confidence 33 3444554
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.29 E-value=1.2 Score=35.75 Aligned_cols=126 Identities=11% Similarity=0.058 Sum_probs=76.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHH
Q 048358 318 WSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLG 397 (541)
Q Consensus 318 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 397 (541)
...++..+...+.......+++.+...+ +.+....+.++..|++.+ .......+.. . ++.......+..|.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~-----~~~yd~~~~~~~c~ 80 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--K-----SNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--c-----cccCCHHHHHHHHH
Confidence 4456666666777788888888877776 456667777777777653 3344444442 1 12222344677777
Q ss_pred hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc-CCHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 048358 398 RAGRLDQALNIIEEMPMKPDAKIWGSLLSSCRTY-SNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYA 463 (541)
Q Consensus 398 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 463 (541)
+.+.++++.-++.+++... .. +..+... ++++.|++.+++ +.++..|..++..+.
T Consensus 81 ~~~l~~~~~~l~~k~~~~~--~A----l~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 81 KAKLYEEAVELYKKDGNFK--DA----IVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HcCcHHHHHHHHHhhcCHH--HH----HHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 7777888888887776321 12 2222223 777777777765 335566777666554
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.4 Score=47.53 Aligned_cols=145 Identities=22% Similarity=0.264 Sum_probs=102.2
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHh-----HHHHHHHHHHh----cCCHHHH
Q 048358 335 IHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIE-----HYGCLVDLLGR----AGRLDQA 405 (541)
Q Consensus 335 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~----~g~~~~A 405 (541)
..+|.-+... +|| .+..++....-.||-+.+++.+....+..++.-... .|...+..+.. ....+.|
T Consensus 177 ~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 177 FGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 3455555554 355 345677777888999999999998877544433322 23334433332 4578889
Q ss_pred HHHHHhC-CCCCCHHHHHHHHH-HHhhcCCHHHHHHHHHHHhccCCC----CcchHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048358 406 LNIIEEM-PMKPDAKIWGSLLS-SCRTYSNLEIAVIAMEHLLVLEPE----DTGNYVLLSNIYAKHGRWEDVSRMRKLIR 479 (541)
Q Consensus 406 ~~~~~~~-~~~p~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 479 (541)
.++++.+ ..-|+...|...-. .+...|++++|++.++++...... ..-.+.-++.++.-..+|++|.+.+..+.
T Consensus 253 ~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~ 332 (468)
T PF10300_consen 253 EELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLL 332 (468)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHH
Confidence 9999998 55688777655443 378899999999999988753311 23466778899999999999999999998
Q ss_pred hCCC
Q 048358 480 SKSM 483 (541)
Q Consensus 480 ~~~~ 483 (541)
+..-
T Consensus 333 ~~s~ 336 (468)
T PF10300_consen 333 KESK 336 (468)
T ss_pred hccc
Confidence 8643
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.06 Score=30.64 Aligned_cols=32 Identities=28% Similarity=0.375 Sum_probs=20.3
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC
Q 048358 420 IWGSLLSSCRTYSNLEIAVIAMEHLLVLEPED 451 (541)
Q Consensus 420 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (541)
.|..+...+...|++++|++.++++++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45556666667777777777777777666653
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.14 E-value=1.3 Score=43.33 Aligned_cols=160 Identities=15% Similarity=0.162 Sum_probs=87.6
Q ss_pred HHHhcCChHHHHHHHHH-HHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHH
Q 048358 223 GYTHIGSYAEALDVFRQ-MQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCIN 301 (541)
Q Consensus 223 ~~~~~g~~~~A~~~~~~-m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 301 (541)
...-.++++++.+..+. -.-..+ | ......++.-+.+.|..+.|.++.. |+ ..-.+...+.|+++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~---------D~---~~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNI-P-KDQGQSIARFLEKKGYPELALQFVT---------DP---DHRFELALQLGNLD 335 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HH
T ss_pred HHHHcCChhhhhhhhhhhhhcccC-C-hhHHHHHHHHHHHCCCHHHHHhhcC---------Ch---HHHhHHHHhcCCHH
Confidence 34456677776665541 111111 1 3345666666677777777766633 22 12344556777788
Q ss_pred HHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcC
Q 048358 302 QASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHH 381 (541)
Q Consensus 302 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 381 (541)
.|.++.++.. +...|..|.......|+++-|.+.|.+... |..|+-.|...|+.+.-.++.+......
T Consensus 336 ~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~- 403 (443)
T PF04053_consen 336 IALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG- 403 (443)
T ss_dssp HHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc-
Confidence 7777766554 555778888888888888888777766432 4455555666677666666665555421
Q ss_pred CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 048358 382 IEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPM 414 (541)
Q Consensus 382 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 414 (541)
-++....++.-.|+.++..+++.+.+.
T Consensus 404 ------~~n~af~~~~~lgd~~~cv~lL~~~~~ 430 (443)
T PF04053_consen 404 ------DINIAFQAALLLGDVEECVDLLIETGR 430 (443)
T ss_dssp -------HHHHHHHHHHHT-HHHHHHHHHHTT-
T ss_pred ------CHHHHHHHHHHcCCHHHHHHHHHHcCC
Confidence 134445555666777777777776653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.045 Score=31.23 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC
Q 048358 419 KIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPE 450 (541)
Q Consensus 419 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 450 (541)
.+|..+...+...|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35666666777777777777777777777665
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.096 Score=43.51 Aligned_cols=102 Identities=11% Similarity=0.120 Sum_probs=66.2
Q ss_pred HHHhccCcHHHHHHHHHHhhhhcCCCCc-----HhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhh
Q 048358 358 SACAHTGFWNEGLMYFDSMKRDHHIEHK-----IEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPD-AKIWGSLLSSCRT 430 (541)
Q Consensus 358 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~ 430 (541)
+-+.+.|++++|..-|...+... ++. ...|..-..++.+.+.++.|++-..+. .+.|+ ......-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~c--p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESC--PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhC--ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence 44667788888888888887642 332 223444455677777888887766665 55553 2344444556777
Q ss_pred cCCHHHHHHHHHHHhccCCCCcchHHHHHHH
Q 048358 431 YSNLEIAVIAMEHLLVLEPEDTGNYVLLSNI 461 (541)
Q Consensus 431 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 461 (541)
...++.|++-|+++++.+|....+-...++.
T Consensus 181 ~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 7888888888888888887765555544443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.07 E-value=1.7 Score=42.62 Aligned_cols=156 Identities=10% Similarity=0.020 Sum_probs=88.1
Q ss_pred HhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 048358 127 CAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLF 206 (541)
Q Consensus 127 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 206 (541)
..-.++++.+.+..+.-.-. +..+....+.++..+-+.|..+.|+++...- ..-.....+.|+++.|.++.
T Consensus 271 av~~~d~~~v~~~i~~~~ll-~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~--------~~rFeLAl~lg~L~~A~~~a 341 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLL-PNIPKDQGQSIARFLEKKGYPELALQFVTDP--------DHRFELALQLGNLDIALEIA 341 (443)
T ss_dssp HHHTT-HHH-----HHHHTG-GG--HHHHHHHHHHHHHTT-HHHHHHHSS-H--------HHHHHHHHHCT-HHHHHHHC
T ss_pred HHHcCChhhhhhhhhhhhhc-ccCChhHHHHHHHHHHHCCCHHHHHhhcCCh--------HHHhHHHHhcCCHHHHHHHH
Confidence 34456666655544311100 0112344677777788888888887765441 34455667778888888877
Q ss_pred hcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhH
Q 048358 207 DKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVI 286 (541)
Q Consensus 207 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 286 (541)
+... +...|..|.......|+++-|.+.|.+.. | +..++-.|...|+.+...++.......|-
T Consensus 342 ~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~------d---~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------ 404 (443)
T PF04053_consen 342 KELD--DPEKWKQLGDEALRQGNIELAEECYQKAK------D---FSGLLLLYSSTGDREKLSKLAKIAEERGD------ 404 (443)
T ss_dssp CCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------
T ss_pred HhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhc------C---ccccHHHHHHhCCHHHHHHHHHHHHHccC------
Confidence 6665 55678888888888888888888887753 2 34555566667777766666666655441
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 048358 287 CNALIEMYIKCGCINQASQLFD 308 (541)
Q Consensus 287 ~~~l~~~~~~~g~~~~A~~~~~ 308 (541)
++....++.-.|+.++..+++.
T Consensus 405 ~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 405 INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHH
Confidence 3334444445566665555544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.04 E-value=1.5 Score=35.29 Aligned_cols=43 Identities=12% Similarity=0.104 Sum_probs=20.7
Q ss_pred HHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhc
Q 048358 81 NAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAG 129 (541)
Q Consensus 81 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~ 129 (541)
..++..+...+.+......++.+...+ +.+...++.++..+++
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~------~~~~~~~~~li~ly~~ 53 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN------SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC------ccchhHHHHHHHHHHH
Confidence 344444444455555555555554443 2344444555555443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.80 E-value=1.2 Score=40.91 Aligned_cols=162 Identities=15% Similarity=0.049 Sum_probs=95.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHccCC-C-------ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-----CCCHHH
Q 048358 286 ICNALIEMYIKCGCINQASQLFDQMVE-R-------DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKV-----PPNDIT 352 (541)
Q Consensus 286 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-----~p~~~~ 352 (541)
.|..+..++.+.-++.+++.+-..-.. | .-....++..++.-.+.++++++.|+...+.-. ......
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 344455555555555555544433211 1 112344566677777888888888887654211 112246
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhh---hcCCCCcHhHHH-----HHHHHHHhcCCHHHHHHHHHhC-------CCCC-
Q 048358 353 FIGLLSACAHTGFWNEGLMYFDSMKR---DHHIEHKIEHYG-----CLVDLLGRAGRLDQALNIIEEM-------PMKP- 416 (541)
Q Consensus 353 ~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~-------~~~p- 416 (541)
+..|...|....|+++|.-+..+... ..++..-..-|. .|.-++...|+..+|.+..++. +.+|
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 77777778888888887766554432 223222222232 3445667778877777777664 3333
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHhcc
Q 048358 417 DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVL 447 (541)
Q Consensus 417 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 447 (541)
.......+...|...|+.+.|..-|+.+...
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 2345566777799999999999888887653
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.71 E-value=2.8 Score=36.92 Aligned_cols=172 Identities=15% Similarity=0.137 Sum_probs=103.6
Q ss_pred HHHHHHhcCCHHHHHHHHHccCCC------ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhc
Q 048358 290 LIEMYIKCGCINQASQLFDQMVER------DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLK-VPPNDITFIGLLSACAH 362 (541)
Q Consensus 290 l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~ 362 (541)
=+..-.+.|++++|.+.|+.+... ...+--.++.++-+.+++++|+...++....- -.|| ..|...+.+.+.
T Consensus 40 ~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs~ 118 (254)
T COG4105 40 EGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLSY 118 (254)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHH
Confidence 344556789999999999988542 23355566778889999999999999987753 2333 334444444432
Q ss_pred -------cCcHH---HHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHH--HHHHHHHhh
Q 048358 363 -------TGFWN---EGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKPDAKIW--GSLLSSCRT 430 (541)
Q Consensus 363 -------~g~~~---~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~--~~l~~~~~~ 430 (541)
..|.. .|..-|+.+..++ |+.. |. .+|..-+..+ .|.... ..+..-|.+
T Consensus 119 ~~~i~~~~rDq~~~~~A~~~f~~~i~ry---PnS~-Ya------------~dA~~~i~~~---~d~LA~~Em~IaryY~k 179 (254)
T COG4105 119 FFQIDDVTRDQSAARAAFAAFKELVQRY---PNSR-YA------------PDAKARIVKL---NDALAGHEMAIARYYLK 179 (254)
T ss_pred hccCCccccCHHHHHHHHHHHHHHHHHC---CCCc-ch------------hhHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 12333 3444444555432 3322 11 1111111111 011111 123445888
Q ss_pred cCCHHHHHHHHHHHhccCCCC---cchHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 431 YSNLEIAVIAMEHLLVLEPED---TGNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 431 ~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
.|.+..|..-++++++.-|.. .+.+..+..+|.+.|..++|...-+-+...
T Consensus 180 r~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 180 RGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred hcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 999999999999998876554 446667778899999999998776665443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.4 Score=43.37 Aligned_cols=153 Identities=12% Similarity=-0.014 Sum_probs=114.7
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHH----HHHHHHHHhcCC
Q 048358 326 ANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHY----GCLVDLLGRAGR 401 (541)
Q Consensus 326 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~ 401 (541)
.-.|+..+|...++++.+. .|.|...+...-.+|.-.|+...-...++++... ..++...| ..+.-++..+|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 3578888988899998886 4777888888888999999999999999988763 34554433 445556678999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC----CcchHHHHHHHHHhcCCHHHHHHHH
Q 048358 402 LDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPE----DTGNYVLLSNIYAKHGRWEDVSRMR 475 (541)
Q Consensus 402 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~ 475 (541)
+++|.+.-++. .+.| |...-......+...|+.+++.+.+.+-...=.. -..-|-..+-.+...+.++.|+++|
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999999887 6666 5677777888888999999999988765432111 1223445566777889999999999
Q ss_pred HHhhhC
Q 048358 476 KLIRSK 481 (541)
Q Consensus 476 ~~m~~~ 481 (541)
+.=.-.
T Consensus 271 D~ei~k 276 (491)
T KOG2610|consen 271 DREIWK 276 (491)
T ss_pred HHHHHH
Confidence 865433
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.62 E-value=3.5 Score=37.75 Aligned_cols=16 Identities=19% Similarity=-0.010 Sum_probs=9.5
Q ss_pred HhhcCCHHHHHHHHHH
Q 048358 428 CRTYSNLEIAVIAMEH 443 (541)
Q Consensus 428 ~~~~~~~~~a~~~~~~ 443 (541)
+.+.++++.|.+.|+-
T Consensus 256 ~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHhhcCHHHHHHHHHH
Confidence 4556666666666654
|
It is also involved in sporulation []. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.61 E-value=3.3 Score=40.16 Aligned_cols=101 Identities=13% Similarity=0.148 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCC--HHHHHHHH
Q 048358 350 DITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMP-M-KPD--AKIWGSLL 425 (541)
Q Consensus 350 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~--~~~~~~l~ 425 (541)
..+-..+..++.+.|+.++|++.++++.+.+...........|+..+...+.+.++..++.+-. + -|. ...|+..+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 3344567777888899999999999998764333345567889999999999999999988873 2 133 34455544
Q ss_pred HHHhhcCC---------------HHHHHHHHHHHhccCCC
Q 048358 426 SSCRTYSN---------------LEIAVIAMEHLLVLEPE 450 (541)
Q Consensus 426 ~~~~~~~~---------------~~~a~~~~~~~~~~~~~ 450 (541)
-.+...++ -..|.+.+.++.+.+|.
T Consensus 339 LkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPH 378 (539)
T PF04184_consen 339 LKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPH 378 (539)
T ss_pred HHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCC
Confidence 33333332 13456777887776654
|
The molecular function of this protein is uncertain. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.57 E-value=2.4 Score=36.81 Aligned_cols=22 Identities=18% Similarity=0.114 Sum_probs=10.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHH
Q 048358 218 TAMISGYTHIGSYAEALDVFRQ 239 (541)
Q Consensus 218 ~~l~~~~~~~g~~~~A~~~~~~ 239 (541)
+.-...|...|.++.|-..+++
T Consensus 95 eKAs~lY~E~GspdtAAmaleK 116 (308)
T KOG1585|consen 95 EKASELYVECGSPDTAAMALEK 116 (308)
T ss_pred HHHHHHHHHhCCcchHHHHHHH
Confidence 3334455555555555444444
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=94.50 E-value=3.8 Score=37.51 Aligned_cols=47 Identities=6% Similarity=0.116 Sum_probs=20.6
Q ss_pred CCCcchHHHHHHHHHhcCCh----HHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 048358 211 YTTIVSWTAMISGYTHIGSY----AEALDVFRQMQMVGIEPDEISIVSVLPAC 259 (541)
Q Consensus 211 ~~~~~~~~~l~~~~~~~g~~----~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 259 (541)
.+|+..-...+.++...|+. .++...+..+... .|+...-...+.++
T Consensus 65 ~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aL 115 (280)
T PRK09687 65 SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINAT 115 (280)
T ss_pred CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHH
Confidence 34444444444555555542 3455555554322 34443333333333
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.28 Score=43.24 Aligned_cols=110 Identities=9% Similarity=0.048 Sum_probs=81.3
Q ss_pred HHHHHhcCC--CCCcchHHHHHHHHHc-----CCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccC------
Q 048358 65 ASLLFKQVK--EPNVFLYNAMIRAYTN-----NHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLL------ 131 (541)
Q Consensus 65 A~~~~~~~~--~~~~~~~~~ll~~~~~-----~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~------ 131 (541)
.++.|.... +.|-.+|-..+..+.. .+..+-....++.|.+.|+ ..|..+|+.|++.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGV-----erDl~vYk~LlnvfPKgkfiP~nv 127 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGV-----ERDLDVYKGLLNVFPKGKFIPQNV 127 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcc-----hhhHHHHHHHHHhCcccccccHHH
Confidence 345555555 4677778777777653 4667777788899999998 999999999999875432
Q ss_pred ----------CchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCCh-HHHHHHHhhcC
Q 048358 132 ----------CPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDEL-IEAHKVFEEMT 179 (541)
Q Consensus 132 ----------~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~ 179 (541)
.-+-+.+++++|...|+.||..+-..|++++.+.+-. .+..++.--|+
T Consensus 128 fQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 128 FQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 2234788999999999999999999999999988763 33444444443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=94.35 E-value=5 Score=38.28 Aligned_cols=151 Identities=11% Similarity=0.019 Sum_probs=79.3
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHhhhh-cCCCCcHhH
Q 048358 313 RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPP---NDITFIGLLSACAHTGFWNEGLMYFDSMKRD-HHIEHKIEH 388 (541)
Q Consensus 313 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~ 388 (541)
....+|..++..+.+.|.++.|...+..+...+..+ .+.....-+......|+..+|+..++..... .....+...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 344567777778888888888888887776643111 2333444455566677778888877777652 110101111
Q ss_pred HHHHHHHHHhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHhhc------CCHHHHHHHHHHHhccCCCCcchHHHHHHH
Q 048358 389 YGCLVDLLGRAGRLDQALNI-IEEMPMKPDAKIWGSLLSSCRTY------SNLEIAVIAMEHLLVLEPEDTGNYVLLSNI 461 (541)
Q Consensus 389 ~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 461 (541)
...+...... ..+..... ........-...+..+..-+... +..+++...|..+.+..|.....|..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111000 00000000 00000000112233333333333 788899999999999999888888888877
Q ss_pred HHhc
Q 048358 462 YAKH 465 (541)
Q Consensus 462 ~~~~ 465 (541)
+.+.
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 6544
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.1 Score=30.33 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=20.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048358 454 NYVLLSNIYAKHGRWEDVSRMRKLIR 479 (541)
Q Consensus 454 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 479 (541)
+|..|+.+|.+.|+|++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788899999999999999988854
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.06 E-value=2.2 Score=33.13 Aligned_cols=61 Identities=13% Similarity=0.155 Sum_probs=41.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhh
Q 048358 318 WSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRD 379 (541)
Q Consensus 318 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 379 (541)
....+..+..+|+-++-.+++..+.+.+ .+++.....+..+|.+.|+..++-+++.+.-++
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 4455667777888888888888877644 677777788888888888888888888877764
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=93.80 E-value=6.5 Score=37.64 Aligned_cols=357 Identities=11% Similarity=0.090 Sum_probs=162.9
Q ss_pred HHcCCChHHHHHHHhcCCC------------------CCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCc
Q 048358 56 CNSGGDLAYASLLFKQVKE------------------PNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDK 117 (541)
Q Consensus 56 ~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~ 117 (541)
+-+.+.+..|.+.+....+ +|-..=+..+..+...|++.++..+++++...=. ..++..+.
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ll-krE~~w~~ 167 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLL-KRECEWNS 167 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh-hhhhcccH
Confidence 3456788888888765432 1222234566778889999999999988876543 01124678
Q ss_pred ccHHHHHHHHhcc--------CCchHHHHHH-------HHHHHh------CCCCchhhHHHHHHHHHcCC-----ChHHH
Q 048358 118 FTLPFVIKSCAGL--------LCPSLGKQIH-------AHVCKF------GLKSHSITENALLDLYGKCD-----ELIEA 171 (541)
Q Consensus 118 ~~~~~ll~~~~~~--------~~~~~a~~~~-------~~~~~~------g~~~~~~~~~~l~~~~~~~g-----~~~~A 171 (541)
.+|+.++-.+++. ...+-.-..+ .++... .+.|.......++....-.- -+-.+
T Consensus 168 d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~ 247 (549)
T PF07079_consen 168 DMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQI 247 (549)
T ss_pred HHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHH
Confidence 8888755554432 1111111222 222111 12333333333333332211 11222
Q ss_pred HHHHhhcC-CCCh-hhHHHHHHHHHhcCCHHHHHHHHhcCC--------CCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 048358 172 HKVFEEMT-DRDI-VAWNNLISGYARLGQMKKARMLFDKMP--------YTTIVSWTAMISGYTHIGSYAEALDVFRQMQ 241 (541)
Q Consensus 172 ~~~~~~~~-~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 241 (541)
.+.|+.-- .|+- .....+...+.+ +.+++..+-+.+. +.=+.++..++....+.++...|...+.-+.
T Consensus 248 l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~ 325 (549)
T PF07079_consen 248 LENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLK 325 (549)
T ss_pred HHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33332221 1221 122233333333 3344433333322 1223567777777888888888877776665
Q ss_pred HCCCCCChHHHHHHH-------HHHH-ccC---ChHHHHHHHHHHHHhCCCccHhHHHHH---HHHHHhcCC-HHHHHHH
Q 048358 242 MVGIEPDEISIVSVL-------PACA-QLG---SLELGEWIHMYCDKNHLLRRTVICNAL---IEMYIKCGC-INQASQL 306 (541)
Q Consensus 242 ~~~~~p~~~~~~~ll-------~~~~-~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~g~-~~~A~~~ 306 (541)
-. .|+...-..++ +..+ ... +...-..++......++... .....| ..-+-+.|. -++|..+
T Consensus 326 ~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrq-QLvh~L~~~Ak~lW~~g~~dekalnL 402 (549)
T PF07079_consen 326 IL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQ-QLVHYLVFGAKHLWEIGQCDEKALNL 402 (549)
T ss_pred hc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHH-HHHHHHHHHHHHHHhcCCccHHHHHH
Confidence 43 44433211111 1111 001 11112222333322222211 111111 222333343 5666666
Q ss_pred HHccCC---CChhHHHHHH----HHHHh---cCChHHHHHHHHHHHhCCCCCCHH----HHHHHHHH--HhccCcHHHHH
Q 048358 307 FDQMVE---RDVVSWSTVI----GGLAN---HGKAHKAIHLFHEMQRLKVPPNDI----TFIGLLSA--CAHTGFWNEGL 370 (541)
Q Consensus 307 ~~~~~~---~~~~~~~~l~----~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~----~~~~l~~~--~~~~g~~~~a~ 370 (541)
++.+.+ .|..+-|... ..|.+ ......-+.+-+-..+.|++|-.. .-+.|.++ +...|++.++.
T Consensus 403 Lk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~ 482 (549)
T PF07079_consen 403 LKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCY 482 (549)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHH
Confidence 666533 2333222221 12221 122333333434444556555332 22333332 33456666665
Q ss_pred HHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 048358 371 MYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKPDAKIWGS 423 (541)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 423 (541)
-.-.-+.+ +.|++.+|..+.-.+....++++|..++..++ |+..+++.
T Consensus 483 ~ys~WL~~---iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 483 LYSSWLTK---IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred HHHHHHHH---hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence 54444443 45677777776666667777777777777765 45554443
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.29 Score=44.31 Aligned_cols=96 Identities=15% Similarity=0.052 Sum_probs=67.7
Q ss_pred HHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHhhcCCH
Q 048358 357 LSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMK-PDAKIWGSLLSSCRTYSNL 434 (541)
Q Consensus 357 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~ 434 (541)
.+.|.+.|.+++|+..|...... .+.+..++..-..+|.+..++..|..-.+.. .+. .-...|..-+.+-...|+.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 55678888888888888877653 2347777777788888888888777666655 211 1234555555666667888
Q ss_pred HHHHHHHHHHhccCCCCcch
Q 048358 435 EIAVIAMEHLLVLEPEDTGN 454 (541)
Q Consensus 435 ~~a~~~~~~~~~~~~~~~~~ 454 (541)
.+|.+-++.++++.|.+.+.
T Consensus 182 ~EAKkD~E~vL~LEP~~~EL 201 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNIEL 201 (536)
T ss_pred HHHHHhHHHHHhhCcccHHH
Confidence 88888888888888886543
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.61 E-value=2.7 Score=34.39 Aligned_cols=121 Identities=16% Similarity=0.152 Sum_probs=58.2
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHH--HHHHHhcCCH
Q 048358 326 ANHGKAHKAIHLFHEMQRLKVPPNDI-TFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCL--VDLLGRAGRL 402 (541)
Q Consensus 326 ~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~ 402 (541)
.+.+..++|+.-|..+.+.|...-+. ............|+...|...|+++-....+|.-..-...| .-.+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 44566677777777776665322111 11122233445566667777777666543222111111111 1233455666
Q ss_pred HHHHHHHHhCC--CCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 048358 403 DQALNIIEEMP--MKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLV 446 (541)
Q Consensus 403 ~~A~~~~~~~~--~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 446 (541)
++...-.+.+. ..| ....-..|.-+-.+.|++.+|...|..+..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 66665555552 112 122333444445566666666666665554
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.39 E-value=1.6 Score=35.51 Aligned_cols=71 Identities=15% Similarity=0.099 Sum_probs=40.9
Q ss_pred HhcCCHHHHHHHHHhC-CCCCCHHHHHHHHH-HHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 048358 397 GRAGRLDQALNIIEEM-PMKPDAKIWGSLLS-SCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGR 467 (541)
Q Consensus 397 ~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 467 (541)
.+.++.+++..++..+ ..+|.......+-. .+...|++.+|+++++.+.+..|..+..-..++.++...|+
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 4556777777777666 34444333222221 24566777777777777666666665555556666655555
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.83 Score=40.40 Aligned_cols=99 Identities=10% Similarity=0.070 Sum_probs=69.4
Q ss_pred CCcchHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccC----------------ChHHHHH
Q 048358 212 TTIVSWTAMISGYTH-----IGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLG----------------SLELGEW 270 (541)
Q Consensus 212 ~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----------------~~~~a~~ 270 (541)
+|-.+|-..+..+.. .+..+=....++.|.+-|+..|..+|..|++.+-+.. +-+-+..
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 344455554444432 3455556667788888899999999999888765432 2345789
Q ss_pred HHHHHHHhCCCccHhHHHHHHHHHHhcCCH-HHHHHHHHcc
Q 048358 271 IHMYCDKNHLLRRTVICNALIEMYIKCGCI-NQASQLFDQM 310 (541)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~ 310 (541)
++++|...|+.||..+-..|++++.+.+-. .+..+..-.|
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 999999999999999999999999887753 3344444444
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.30 E-value=3.8 Score=33.75 Aligned_cols=127 Identities=14% Similarity=0.140 Sum_probs=56.1
Q ss_pred HHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcC--CHHHHHHHHhcCCCCCcchHHHH
Q 048358 143 VCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLG--QMKKARMLFDKMPYTTIVSWTAM 220 (541)
Q Consensus 143 ~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~l 220 (541)
+.+.+++|+...+..+++.+.+.|++..-..++..=.-+|.......+-.+.... -..-|.+.+.++. ..+..+
T Consensus 20 l~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~----~~~~~i 95 (167)
T PF07035_consen 20 LNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG----TAYEEI 95 (167)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh----hhHHHH
Confidence 3344455555555555555555555554444443332232222222221111110 1223333333332 234555
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 048358 221 ISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDK 277 (541)
Q Consensus 221 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 277 (541)
+..+...|++-+|+++.+..... +......++.+..+.+|...--.+++...+
T Consensus 96 ievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 96 IEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666777777777766654221 111223445555555555444444444433
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.22 E-value=4.1 Score=33.57 Aligned_cols=133 Identities=11% Similarity=0.003 Sum_probs=87.8
Q ss_pred HHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCC--ChHHHHHHH
Q 048358 98 NLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCD--ELIEAHKVF 175 (541)
Q Consensus 98 ~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g--~~~~A~~~~ 175 (541)
+.++.+.+.++ +|+...+..++..+.+.|.+... .+++..++-+|.......+-.+.... -..-|.+++
T Consensus 15 EYirSl~~~~i-----~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDML 85 (167)
T PF07035_consen 15 EYIRSLNQHNI-----PVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDML 85 (167)
T ss_pred HHHHHHHHcCC-----CCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHH
Confidence 44455566777 89999999999999999986544 45566666666554443332222211 133344555
Q ss_pred hhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048358 176 EEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMV 243 (541)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 243 (541)
.++. ..+..++..+...|++-+|.++.......+......++.+-.+.++..-=..+|+-..+.
T Consensus 86 kRL~----~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 86 KRLG----TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred HHhh----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5543 356677888999999999999998876555556667777777777766555555555443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.18 E-value=2.8 Score=38.63 Aligned_cols=151 Identities=11% Similarity=0.075 Sum_probs=92.9
Q ss_pred CCCCC-hhhHHHHHHhccC-hh----HHHHHHHHHHHhccCCchhHHHHHHHHHHc--C----CChHHHHHHHhcCCC--
Q 048358 9 SIKEL-EDRFVPILQSCEN-LI----ELKKIHTQILKYLLSQSNFLVTKMIDVCNS--G----GDLAYASLLFKQVKE-- 74 (541)
Q Consensus 9 g~~~~-~~~~~~~l~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----~~~~~A~~~~~~~~~-- 74 (541)
+.+.+ ..+++.+|..... ++ .+..+++.+.+.|+..+.++|-+..-.... . .....|..+++.|.+
T Consensus 54 ~lr~~~~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H 133 (297)
T PF13170_consen 54 PLRGNHRFILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKH 133 (297)
T ss_pred cccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhC
Confidence 34443 4455566665554 43 346888999999999888877775444433 2 245678899999886
Q ss_pred -----CCcchHHHHHHHHHcCCCh----hHHHHHHHHhhhCCCCCCCCCCCcccH-HHHHHHHhccCC--chHHHHHHHH
Q 048358 75 -----PNVFLYNAMIRAYTNNHLY----GLAINLYKQMLRDPRTGSLILPDKFTL-PFVIKSCAGLLC--PSLGKQIHAH 142 (541)
Q Consensus 75 -----~~~~~~~~ll~~~~~~g~~----~~A~~~~~~m~~~~~~~~~~~p~~~~~-~~ll~~~~~~~~--~~~a~~~~~~ 142 (541)
++-.++..++.. ..++. +.+..+|+.+...|.. +-|...+ ..++..+..... ...+..+++.
T Consensus 134 ~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~----kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~ 207 (297)
T PF13170_consen 134 PFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFK----KGNDLQFLSHILALSEGDDQEKVARVIELYNA 207 (297)
T ss_pred ccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCC----CCcHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 445556666544 33443 4567788888887762 3333233 333333332222 3467888889
Q ss_pred HHHhCCCCchhhHHHHHHHHHcC
Q 048358 143 VCKFGLKSHSITENALLDLYGKC 165 (541)
Q Consensus 143 ~~~~g~~~~~~~~~~l~~~~~~~ 165 (541)
+.+.|+++....|..+.-...-.
T Consensus 208 l~~~~~kik~~~yp~lGlLall~ 230 (297)
T PF13170_consen 208 LKKNGVKIKYMHYPTLGLLALLE 230 (297)
T ss_pred HHHcCCccccccccHHHHHHhcC
Confidence 99999888877776554433333
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=92.92 E-value=13 Score=38.58 Aligned_cols=127 Identities=10% Similarity=0.001 Sum_probs=75.2
Q ss_pred HHHHHHHHcCCChHHHHHHHhcCCC----CCcchHHHHH-----HHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccH
Q 048358 50 TKMIDVCNSGGDLAYASLLFKQVKE----PNVFLYNAMI-----RAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTL 120 (541)
Q Consensus 50 ~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~ll-----~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~ 120 (541)
..++..+.+.+... |.+.+++..+ .....|.... ..+...+++..|++.++....... ....|....+
T Consensus 104 ~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~--~~~d~~~~v~ 180 (608)
T PF10345_consen 104 FLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLAN--QRGDPAVFVL 180 (608)
T ss_pred HHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhh--hcCCHHHHHH
Confidence 34567777766555 8888877553 1122232222 222234799999999988765421 0004555566
Q ss_pred HHHHHHHh--ccCCchHHHHHHHHHHHhCC---------CCchhhHHHHHHHH--HcCCChHHHHHHHhhcC
Q 048358 121 PFVIKSCA--GLLCPSLGKQIHAHVCKFGL---------KSHSITENALLDLY--GKCDELIEAHKVFEEMT 179 (541)
Q Consensus 121 ~~ll~~~~--~~~~~~~a~~~~~~~~~~g~---------~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~ 179 (541)
..++.+.. +.+.++.+.+..+.+..... .|...++..+++.+ ...|+++.+...++.+.
T Consensus 181 ~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 181 ASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666554 45667777777777754322 23455666666554 46788778877776664
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.87 E-value=0.28 Score=39.72 Aligned_cols=86 Identities=16% Similarity=0.140 Sum_probs=57.1
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHH
Q 048358 122 FVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKK 201 (541)
Q Consensus 122 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 201 (541)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++.... .-...++..|.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 35666677777888888888888766566677788888888888777777777774332 333455666666666666
Q ss_pred HHHHHhcCC
Q 048358 202 ARMLFDKMP 210 (541)
Q Consensus 202 A~~~~~~~~ 210 (541)
|.-++.++.
T Consensus 89 a~~Ly~~~~ 97 (143)
T PF00637_consen 89 AVYLYSKLG 97 (143)
T ss_dssp HHHHHHCCT
T ss_pred HHHHHHHcc
Confidence 666666554
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=92.79 E-value=11 Score=40.73 Aligned_cols=144 Identities=16% Similarity=0.140 Sum_probs=89.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc
Q 048358 286 ICNALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGF 365 (541)
Q Consensus 286 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 365 (541)
.|.-.++.-.+.|.+.+|..++..=.+.-...|.+....+.....+++|.-.|+..-+ ....+.+|...|+
T Consensus 910 ~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~d 980 (1265)
T KOG1920|consen 910 YFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGD 980 (1265)
T ss_pred ccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhcc
Confidence 3445555556677777777766543333344566666666677888888777765432 1234677788889
Q ss_pred HHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHh
Q 048358 366 WNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLL 445 (541)
Q Consensus 366 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 445 (541)
|.+|..+...+.. +..--..+-..|+..+...++.-+|-++..+..-+|.. .+..+++...+++|.++.....
T Consensus 981 Wr~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~-----av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 981 WREALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEE-----AVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHH-----HHHHHhhHhHHHHHHHHHHhcc
Confidence 9988888887754 11112223356778888888888888888877434432 2233445555666666555443
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=92.75 E-value=4.9 Score=41.56 Aligned_cols=48 Identities=15% Similarity=0.075 Sum_probs=32.2
Q ss_pred CcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhcc
Q 048358 76 NVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGL 130 (541)
Q Consensus 76 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~ 130 (541)
+...| .+|-.|.|.|++++|.++.......- ......|...+..+...
T Consensus 111 ~~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~~------~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 111 GDPIW-ALIYYCLRCGDYDEALEVANENRNQF------QKIERSFPTYLKAYASS 158 (613)
T ss_dssp TEEHH-HHHHHHHTTT-HHHHHHHHHHTGGGS-------TTTTHHHHHHHHCTTT
T ss_pred CCccH-HHHHHHHhcCCHHHHHHHHHHhhhhh------cchhHHHHHHHHHHHhC
Confidence 34455 35556789999999999886665543 55667788888888765
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.73 E-value=25 Score=41.33 Aligned_cols=315 Identities=12% Similarity=0.074 Sum_probs=172.7
Q ss_pred HHHHHHHcCCChHHHHHHHhhc----CCCC-hhhHHHHH-HHHHhcCCHHHHHHHHhc-CCCCCcchHHHHHHHHHhcCC
Q 048358 157 ALLDLYGKCDELIEAHKVFEEM----TDRD-IVAWNNLI-SGYARLGQMKKARMLFDK-MPYTTIVSWTAMISGYTHIGS 229 (541)
Q Consensus 157 ~l~~~~~~~g~~~~A~~~~~~~----~~~~-~~~~~~l~-~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~l~~~~~~~g~ 229 (541)
.+..+-.+++.+.+|...++.- .+.+ ...+..++ ..|+.-++++....+... ...++ ...-+......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhcc
Confidence 4555677888999999999883 2211 12333334 488888888887777663 33332 2334455677899
Q ss_pred hHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHH-HHHHHHhcCCHHHHHHHHH
Q 048358 230 YAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNA-LIEMYIKCGCINQASQLFD 308 (541)
Q Consensus 230 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~ 308 (541)
+..|...|+.+.+.+ ++...+++-++......+.++...-..+-..... .+....+++ =..+--+.++++.......
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 999999999998764 4447788888888888888887776655444432 222233333 2445567777777777665
Q ss_pred ccCCCChhHHHHH-H-HHHHhcC--ChHHHHHHHHHHHhCCCCC---------CHHHHHHHHHHHhccCcHHHHHHHHHH
Q 048358 309 QMVERDVVSWSTV-I-GGLANHG--KAHKAIHLFHEMQRLKVPP---------NDITFIGLLSACAHTGFWNEGLMYFDS 375 (541)
Q Consensus 309 ~~~~~~~~~~~~l-~-~~~~~~~--~~~~a~~~~~~m~~~~~~p---------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 375 (541)
+.+..+|... + ....+.. +.-.-.+..+.+++.-+.| =...|..++....-. +.+.-.+.+..
T Consensus 1543 ---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~~~~~l~~ 1618 (2382)
T KOG0890|consen 1543 ---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELENSIEELKK 1618 (2382)
T ss_pred ---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHHHHHHHhhc
Confidence 5555666554 2 2222222 1111112333332211111 001222222221110 11111111111
Q ss_pred hhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCC-----CHHHHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 048358 376 MKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM----PMKP-----DAKIWGSLLSSCRTYSNLEIAVIAMEHLLV 446 (541)
Q Consensus 376 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 446 (541)
.........+...|..-+.--....+..+-+--+++. ...| -..+|......+...|+++.|...+-.+.+
T Consensus 1619 ~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e 1698 (2382)
T KOG0890|consen 1619 VSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKE 1698 (2382)
T ss_pred cCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhh
Confidence 1110000111111221111111111122211112221 1122 357788888889999999999999888877
Q ss_pred cCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 048358 447 LEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKS 482 (541)
Q Consensus 447 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 482 (541)
..+ +..+.-.+..+.+.|+...|+.++++..+..
T Consensus 1699 ~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1699 SRL--PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred ccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 663 4578888999999999999999999988654
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.23 Score=28.14 Aligned_cols=30 Identities=23% Similarity=0.224 Sum_probs=18.4
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHhccCC
Q 048358 420 IWGSLLSSCRTYSNLEIAVIAMEHLLVLEP 449 (541)
Q Consensus 420 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 449 (541)
+|..+...+...|++++|...|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 344555556666666666666666666555
|
... |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.21 Score=28.97 Aligned_cols=27 Identities=22% Similarity=0.151 Sum_probs=20.2
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 048358 420 IWGSLLSSCRTYSNLEIAVIAMEHLLV 446 (541)
Q Consensus 420 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 446 (541)
+|..|...|.+.|++++|+++|++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 466777888888888888888888554
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.34 E-value=1.5 Score=39.48 Aligned_cols=75 Identities=16% Similarity=0.270 Sum_probs=38.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhh----hcCCCCcHhHHHHHH
Q 048358 318 WSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKR----DHHIEHKIEHYGCLV 393 (541)
Q Consensus 318 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~~l~ 393 (541)
+..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ ..|+.|...+...+.
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 3444455555555555555555555554 44555555555555555555555555555433 234455544444333
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.31 E-value=1.3 Score=35.99 Aligned_cols=95 Identities=17% Similarity=0.052 Sum_probs=58.9
Q ss_pred HHHHHHHH---HHhccCcHHHHHHHHHHhhhhcCCCCcH-hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 048358 351 ITFIGLLS---ACAHTGFWNEGLMYFDSMKRDHHIEHKI-EHYGCLVDLLGRAGRLDQALNIIEEM-PMKPDAKIWGSLL 425 (541)
Q Consensus 351 ~~~~~l~~---~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 425 (541)
.+...|+. .-...++.+.+..++..+.-- .|.. ..-..-...+...|++.+|..+|+++ ...|....-..|+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL---RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALl 84 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVL---RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALL 84 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHH
Confidence 34444444 445778999999999999763 3443 22233455678899999999999999 3345555555666
Q ss_pred HHHhhcCCHHHHHHHHHHHhccC
Q 048358 426 SSCRTYSNLEIAVIAMEHLLVLE 448 (541)
Q Consensus 426 ~~~~~~~~~~~a~~~~~~~~~~~ 448 (541)
..|.....-..=...-+++++.+
T Consensus 85 A~CL~~~~D~~Wr~~A~evle~~ 107 (160)
T PF09613_consen 85 ALCLYALGDPSWRRYADEVLESG 107 (160)
T ss_pred HHHHHHcCChHHHHHHHHHHhcC
Confidence 65554433333333444444443
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.28 E-value=29 Score=40.91 Aligned_cols=63 Identities=14% Similarity=0.005 Sum_probs=46.7
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccC
Q 048358 385 KIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLE 448 (541)
Q Consensus 385 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 448 (541)
-..+|....+...+.|+++.|...+-+. ... -+..+.-...-....|+...|+.++++.++..
T Consensus 1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESR-LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 3567888888888899999998765555 322 33445555666788999999999999988655
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.25 E-value=3 Score=35.09 Aligned_cols=87 Identities=11% Similarity=0.140 Sum_probs=43.6
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHH
Q 048358 323 GGLANHGKAHKAIHLFHEMQRLKVPPND-----ITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLG 397 (541)
Q Consensus 323 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 397 (541)
.-+...|++++|..-|...+.. +++.. ..|..-..++.+.+.++.|+.--.+..+-+ +........-..+|.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYE 179 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHH
Confidence 3455666666666666666654 23322 123333344555666666665555554421 112222222334566
Q ss_pred hcCCHHHHHHHHHhC
Q 048358 398 RAGRLDQALNIIEEM 412 (541)
Q Consensus 398 ~~g~~~~A~~~~~~~ 412 (541)
+...+++|++-|..+
T Consensus 180 k~ek~eealeDyKki 194 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKI 194 (271)
T ss_pred hhhhHHHHHHHHHHH
Confidence 666666666666555
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.19 E-value=7.2 Score=33.82 Aligned_cols=23 Identities=26% Similarity=0.198 Sum_probs=11.5
Q ss_pred CCHHHHHHHHHHHhccCCCCcch
Q 048358 432 SNLEIAVIAMEHLLVLEPEDTGN 454 (541)
Q Consensus 432 ~~~~~a~~~~~~~~~~~~~~~~~ 454 (541)
.+.-.+...+++..+.+|.-..+
T Consensus 209 ~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 209 ADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred ccHHHHHHHHHHHHhcCCccccc
Confidence 44444455555555555555443
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=92.14 E-value=0.53 Score=42.75 Aligned_cols=95 Identities=14% Similarity=0.096 Sum_probs=64.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcC
Q 048358 321 VIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAG 400 (541)
Q Consensus 321 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 400 (541)
-.+-|.++|.+++|+++|....... +-|.+++..-..+|.+...+..|..--.....-. ..-+..|..-+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--KLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--HHHHHHHHHHHHHHHHHh
Confidence 3567999999999999999887764 4499999999999999999988877666665421 112233333333333445
Q ss_pred CHHHHHHHHHhC-CCCCCH
Q 048358 401 RLDQALNIIEEM-PMKPDA 418 (541)
Q Consensus 401 ~~~~A~~~~~~~-~~~p~~ 418 (541)
...+|.+-++.. .+.|+.
T Consensus 180 ~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKN 198 (536)
T ss_pred hHHHHHHhHHHHHhhCccc
Confidence 556666555554 566763
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.12 E-value=0.8 Score=41.18 Aligned_cols=59 Identities=20% Similarity=0.327 Sum_probs=30.1
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048358 421 WGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIR 479 (541)
Q Consensus 421 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 479 (541)
+..++..+...|+++.+...+++++..+|-+...|..+..+|.+.|+...|+..|+.+.
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 33344444445555555555555555555555555555555555555555555555443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.12 E-value=4.3 Score=34.11 Aligned_cols=60 Identities=10% Similarity=0.248 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHhh
Q 048358 318 WSTVIGGLANHGKAHKAIHLFHEMQRLKVPPND--ITFIGLLSACAHTGFWNEGLMYFDSMK 377 (541)
Q Consensus 318 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~ 377 (541)
+..+...|.+.|+.+.|.+.|.++.+....|.. ..+..++......+++..+.....++.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 344455555555555555555555544323322 223444455555555555555554443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=91.99 E-value=1.2 Score=35.40 Aligned_cols=68 Identities=16% Similarity=0.228 Sum_probs=39.7
Q ss_pred hcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 048358 398 RAGRLDQALNIIEEM-PMKPD---AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGR 467 (541)
Q Consensus 398 ~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 467 (541)
..++.+++..+++.+ ...|+ ..++...+ +...|++.+|.++++++.+-.+..+..-..++.++.-.|+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 466777777777766 33343 33333332 4466777777777777666555555455555555555555
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=91.72 E-value=2.6 Score=40.34 Aligned_cols=89 Identities=15% Similarity=0.100 Sum_probs=45.8
Q ss_pred HHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHH
Q 048358 395 LLGRAGRLDQALNIIEEM-P-MKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVS 472 (541)
Q Consensus 395 ~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 472 (541)
.+...|+++.+...+... + +.....+..+++....+.|+++.|....+.++..+-.+++.....+-.....|-++++.
T Consensus 332 i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~ 411 (831)
T PRK15180 332 IFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSY 411 (831)
T ss_pred HHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHH
Confidence 344455555555555544 1 22334455555555555555555555555555555444444444444444555555555
Q ss_pred HHHHHhhhCCC
Q 048358 473 RMRKLIRSKSM 483 (541)
Q Consensus 473 ~~~~~m~~~~~ 483 (541)
..++++...+.
T Consensus 412 ~~wk~~~~~~~ 422 (831)
T PRK15180 412 HYWKRVLLLNP 422 (831)
T ss_pred HHHHHHhccCC
Confidence 55555544433
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=91.59 E-value=11 Score=34.57 Aligned_cols=220 Identities=9% Similarity=-0.048 Sum_probs=109.5
Q ss_pred CCchhHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHcCCCh----hHHHHHHHHhhhCCCCCCCCCCCcc
Q 048358 43 SQSNFLVTKMIDVCNSGGDLAYASLLFKQVKEPNVFLYNAMIRAYTNNHLY----GLAINLYKQMLRDPRTGSLILPDKF 118 (541)
Q Consensus 43 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~----~~A~~~~~~m~~~~~~~~~~~p~~~ 118 (541)
.+|..+....+..+...|..+-...+..-...+|...-...+.++..-|.. .++...+..+... .|+..
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~-------D~d~~ 106 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE-------DKSAC 106 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc-------CCCHH
Confidence 566667777777777777654444444433445665555666666766653 4577777766433 45665
Q ss_pred cHHHHHHHHhccCCchH--HHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhc
Q 048358 119 TLPFVIKSCAGLLCPSL--GKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARL 196 (541)
Q Consensus 119 ~~~~ll~~~~~~~~~~~--a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 196 (541)
.-...+.+++..+.... ..+..+.+...-..++..+-...+.++.+.|+.+....+..-+..++...-..-+.++++.
T Consensus 107 VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 107 VRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSN 186 (280)
T ss_pred HHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcC
Confidence 55566666655432211 1122222222222345556666667777776644333333333345554444444444443
Q ss_pred C-CHHHHHH-HHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHH
Q 048358 197 G-QMKKARM-LFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMY 274 (541)
Q Consensus 197 ~-~~~~A~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 274 (541)
+ ....+.. +...+..++..+-...+.++.+.|+ ..|+..+-+..+.+ + .....+.++...|+. .+...+..
T Consensus 187 ~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~ 259 (280)
T PRK09687 187 KYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDT 259 (280)
T ss_pred CCCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHH
Confidence 2 1222332 2333334555555556666666665 34444444444332 1 122344455555553 34444444
Q ss_pred HH
Q 048358 275 CD 276 (541)
Q Consensus 275 ~~ 276 (541)
+.
T Consensus 260 l~ 261 (280)
T PRK09687 260 LL 261 (280)
T ss_pred HH
Confidence 43
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.55 E-value=0.36 Score=27.27 Aligned_cols=29 Identities=14% Similarity=0.211 Sum_probs=25.1
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 453 GNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 453 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
..|..++.++.+.|++++|.+.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 57889999999999999999999998764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.23 E-value=21 Score=37.22 Aligned_cols=153 Identities=9% Similarity=0.044 Sum_probs=100.5
Q ss_pred CchhHHHHHHHHH----HcCCChHHHHHHHhcCCC-CCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcc
Q 048358 44 QSNFLVTKMIDVC----NSGGDLAYASLLFKQVKE-PNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKF 118 (541)
Q Consensus 44 ~~~~~~~~l~~~~----~~~~~~~~A~~~~~~~~~-~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~ 118 (541)
.+......++..| -+.|++++|...+-+-.. -++ .-++.-|....+...-...++.+.+.|+ .+..
T Consensus 362 ~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~---s~Vi~kfLdaq~IknLt~YLe~L~~~gl------a~~d 432 (933)
T KOG2114|consen 362 LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP---SEVIKKFLDAQRIKNLTSYLEALHKKGL------ANSD 432 (933)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh---HHHHHHhcCHHHHHHHHHHHHHHHHccc------ccch
Confidence 3444444554444 556999999887754332 111 2356667777778888888999999984 6677
Q ss_pred cHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCC
Q 048358 119 TLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQ 198 (541)
Q Consensus 119 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 198 (541)
.-..|+.+|.+.++.+.-.+..+... .|.- ..-....+..+.+.+-.++|..+-.+... ....... .+-..++
T Consensus 433 httlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-he~vl~i---lle~~~n 505 (933)
T KOG2114|consen 433 HTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-HEWVLDI---LLEDLHN 505 (933)
T ss_pred hHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-CHHHHHH---HHHHhcC
Confidence 77889999999999887766554332 1210 11234567777788888888777666543 2222222 3445688
Q ss_pred HHHHHHHHhcCCCC
Q 048358 199 MKKARMLFDKMPYT 212 (541)
Q Consensus 199 ~~~A~~~~~~~~~~ 212 (541)
+++|.+.+..++.+
T Consensus 506 y~eAl~yi~slp~~ 519 (933)
T KOG2114|consen 506 YEEALRYISSLPIS 519 (933)
T ss_pred HHHHHHHHhcCCHH
Confidence 99999999999754
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.61 E-value=0.51 Score=26.72 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=25.7
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 048358 453 GNYVLLSNIYAKHGRWEDVSRMRKLIRSKS 482 (541)
Q Consensus 453 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 482 (541)
.+|..++.+|...|++++|+..+++..+..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 578999999999999999999999987643
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=90.25 E-value=0.5 Score=24.93 Aligned_cols=24 Identities=13% Similarity=0.234 Sum_probs=18.5
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHH
Q 048358 453 GNYVLLSNIYAKHGRWEDVSRMRK 476 (541)
Q Consensus 453 ~~~~~l~~~~~~~g~~~~A~~~~~ 476 (541)
.....++..+...|++++|.++++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356678888888888888887765
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=90.06 E-value=18 Score=34.45 Aligned_cols=53 Identities=9% Similarity=0.056 Sum_probs=30.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 048358 221 ISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDK 277 (541)
Q Consensus 221 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 277 (541)
+.+.-+.|+++...+........ .++...+..+... ..++.+.+...++.+..
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 45667788888855555444322 2344444443333 67777777777666554
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=90.06 E-value=11 Score=34.74 Aligned_cols=50 Identities=18% Similarity=0.311 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHCCCCCChHHHHHHHHHHHc--cCC----hHHHHHHHHHHHHhC
Q 048358 230 YAEALDVFRQMQMVGIEPDEISIVSVLPACAQ--LGS----LELGEWIHMYCDKNH 279 (541)
Q Consensus 230 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~~~----~~~a~~~~~~~~~~~ 279 (541)
+++.+.+++.|.+.|++-+..+|.+....... ..+ ...+..+++.|.+..
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H 133 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKH 133 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhC
Confidence 45567788888888888888777664433333 222 335666666666654
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=89.54 E-value=6.2 Score=33.19 Aligned_cols=94 Identities=13% Similarity=0.057 Sum_probs=60.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHccCCCC------hhHHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCCHHHHHH
Q 048358 285 VICNALIEMYIKCGCINQASQLFDQMVERD------VVSWSTVIGGLANHGKAHKAIHLFHEMQRL---KVPPNDITFIG 355 (541)
Q Consensus 285 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~~~~~ 355 (541)
..+..+.+.|++.|+.+.|.+.|.++.+.. ...+-.++......+++..+.....+.... |-.++...-..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 357788889999999999999998886542 335667778888889999888887776543 21111111111
Q ss_pred HHH--HHhccCcHHHHHHHHHHhhh
Q 048358 356 LLS--ACAHTGFWNEGLMYFDSMKR 378 (541)
Q Consensus 356 l~~--~~~~~g~~~~a~~~~~~~~~ 378 (541)
... .+...+++..|-+.|-....
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCc
Confidence 111 12345677777776666554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.42 E-value=13 Score=31.94 Aligned_cols=178 Identities=12% Similarity=0.034 Sum_probs=102.6
Q ss_pred cCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChh-HHHHHH--HHHHhcCChHHHHHHH
Q 048358 262 LGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERDVV-SWSTVI--GGLANHGKAHKAIHLF 338 (541)
Q Consensus 262 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~l~--~~~~~~~~~~~a~~~~ 338 (541)
.|-+..|.-=|.+..... +.-+.+||-|.-.+...|+++.|.+.|+...+-|+. -|..+= -++-..|++.-|.+-+
T Consensus 78 lGL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~ 156 (297)
T COG4785 78 LGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDL 156 (297)
T ss_pred hhHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHH
Confidence 344444444444444433 223678999999999999999999999999775543 232222 2334568999998877
Q ss_pred HHHHhCCCCCCHH--HHHHHHHHHhccCcHHHHHHHH-HHhhhhcCCCCcHhHHHHHHHHHH-hcCCHHHHHHHHHhCCC
Q 048358 339 HEMQRLKVPPNDI--TFIGLLSACAHTGFWNEGLMYF-DSMKRDHHIEHKIEHYGCLVDLLG-RAGRLDQALNIIEEMPM 414 (541)
Q Consensus 339 ~~m~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~ 414 (541)
.+.-+.+ +.|+. .|.-+. ...-++.+|..-+ ++..+ .+..-|...+-.|. -.=..+.+.+-......
T Consensus 157 ~~fYQ~D-~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~-----~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~ 227 (297)
T COG4785 157 LAFYQDD-PNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEK-----SDKEQWGWNIVEFYLGKISEETLMERLKADAT 227 (297)
T ss_pred HHHHhcC-CCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHh-----ccHhhhhHHHHHHHHhhccHHHHHHHHHhhcc
Confidence 7776654 33332 222222 2344566665444 33332 34444544443332 21122222222222211
Q ss_pred C------CCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCC
Q 048358 415 K------PDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEP 449 (541)
Q Consensus 415 ~------p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 449 (541)
. .-..||-.+..-+...|+.++|..+|+-++..+.
T Consensus 228 ~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 228 DNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 1 1245677788888999999999999999887653
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.31 E-value=12 Score=31.52 Aligned_cols=92 Identities=12% Similarity=-0.035 Sum_probs=60.0
Q ss_pred HHHHHhccCcHHHHHHHHHHhhhhcCCCCcH----hHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHhh
Q 048358 356 LLSACAHTGFWNEGLMYFDSMKRDHHIEHKI----EHYGCLVDLLGRAGRLDQALNIIEEMPMK-PDAKIWGSLLSSCRT 430 (541)
Q Consensus 356 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~ 430 (541)
+...+...|++++|...++..... +.|. ..-..|.......|.+|+|+..++...-+ -.......-...+..
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~ 171 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLA 171 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHH
Confidence 345577788888888888876642 1221 11234556777888888888888877421 122223334455888
Q ss_pred cCCHHHHHHHHHHHhccCCC
Q 048358 431 YSNLEIAVIAMEHLLVLEPE 450 (541)
Q Consensus 431 ~~~~~~a~~~~~~~~~~~~~ 450 (541)
.|+-++|+..|+++++.++.
T Consensus 172 kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 172 KGDKQEARAAYEKALESDAS 191 (207)
T ss_pred cCchHHHHHHHHHHHHccCC
Confidence 88888888888888887633
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=89.20 E-value=0.76 Score=25.60 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=11.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhh
Q 048358 456 VLLSNIYAKHGRWEDVSRMRKLIR 479 (541)
Q Consensus 456 ~~l~~~~~~~g~~~~A~~~~~~m~ 479 (541)
..++.++.+.|++++|.+.++++.
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHH
Confidence 344444444555555555544443
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.00 E-value=13 Score=31.38 Aligned_cols=91 Identities=11% Similarity=0.006 Sum_probs=66.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH-----HHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 048358 391 CLVDLLGRAGRLDQALNIIEEMPMKPDAKIWGS-----LLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKH 465 (541)
Q Consensus 391 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 465 (541)
.+...+..+|++++|...++..--.|....+.. |.......|.+++|...++...+.+-. +..-..-++++...
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~-~~~~elrGDill~k 172 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA-AIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH-HHHHHHhhhHHHHc
Confidence 455678899999999999987633344444443 444578899999999988765442211 22344678899999
Q ss_pred CCHHHHHHHHHHhhhCC
Q 048358 466 GRWEDVSRMRKLIRSKS 482 (541)
Q Consensus 466 g~~~~A~~~~~~m~~~~ 482 (541)
|+-++|+.-|++..+.+
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 99999999999998876
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=88.82 E-value=7.6 Score=28.53 Aligned_cols=58 Identities=17% Similarity=0.296 Sum_probs=33.1
Q ss_pred HHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHH
Q 048358 192 GYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISI 252 (541)
Q Consensus 192 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 252 (541)
.+...|++++|..+.+.+..||...|-+|.. .+.|-.++...-+.+|...| .|....|
T Consensus 48 SLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 3445566666666666666666666655433 34565666666666666655 5554444
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=88.74 E-value=25 Score=34.44 Aligned_cols=175 Identities=10% Similarity=0.083 Sum_probs=105.7
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHccCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048358 283 RTVICNALIEMYIKCGCINQASQLFDQMVE--RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSAC 360 (541)
Q Consensus 283 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 360 (541)
|-...-+++..+...-.+.-.+.+..+|.. .+...|..++.+|... ..++-..+|+++.+.. -|...+..-+..+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHHHHHHH
Confidence 444455566666666666667777766643 4556777778888777 5567777888777764 2333333333333
Q ss_pred hccCcHHHHHHHHHHhhhhcCCCCc------HhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHhh
Q 048358 361 AHTGFWNEGLMYFDSMKRDHHIEHK------IEHYGCLVDLLGRAGRLDQALNIIEEM----PMKPDAKIWGSLLSSCRT 430 (541)
Q Consensus 361 ~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~ 430 (541)
...++.+.+..+|.++... +.|. ...|..+.... ..+.+..+.+..++ +...-...+..+-.-|..
T Consensus 142 yEkik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 142 YEKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 3337777777888777653 2331 12344443322 34556666655555 333344555556666778
Q ss_pred cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 048358 431 YSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAK 464 (541)
Q Consensus 431 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 464 (541)
..++++|++++...++.+..|..+...++.-+..
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 8888888888888887776665555555555444
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=88.67 E-value=1.1 Score=25.28 Aligned_cols=29 Identities=21% Similarity=0.290 Sum_probs=25.8
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 453 GNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 453 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
.+|..++.+|...|++++|...+++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46889999999999999999999987653
|
... |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=88.62 E-value=0.95 Score=26.94 Aligned_cols=28 Identities=21% Similarity=0.326 Sum_probs=22.8
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048358 453 GNYVLLSNIYAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 453 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 480 (541)
.+++.|+..|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678889999999999999999888765
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=88.55 E-value=4.5 Score=29.82 Aligned_cols=63 Identities=13% Similarity=0.184 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHH
Q 048358 331 AHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDL 395 (541)
Q Consensus 331 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 395 (541)
.-+..+-+..+....+.|++......+.+|.+.+++..|+++|+.++.+.+ +....|..++.-
T Consensus 26 ~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lqE 88 (108)
T PF02284_consen 26 GWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHHH
Confidence 345566677777788899999999999999999999999999999987644 333367666643
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=88.37 E-value=0.71 Score=25.74 Aligned_cols=25 Identities=12% Similarity=0.129 Sum_probs=20.7
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHh
Q 048358 421 WGSLLSSCRTYSNLEIAVIAMEHLL 445 (541)
Q Consensus 421 ~~~l~~~~~~~~~~~~a~~~~~~~~ 445 (541)
+..+..++.+.|++++|.+.|++++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4456677888999999999999875
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.31 E-value=2.4 Score=38.26 Aligned_cols=106 Identities=17% Similarity=0.124 Sum_probs=80.2
Q ss_pred HHHHHhccCCchhHHHHHHHHHHcCCChHHHHHHHhcCCC-------CCcchHHHHHHHHHcCCChhHHHHHHHHhhhCC
Q 048358 35 TQILKYLLSQSNFLVTKMIDVCNSGGDLAYASLLFKQVKE-------PNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDP 107 (541)
Q Consensus 35 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~ 107 (541)
..-...|.+.++.+...++.+-....+++++...+-++.. ++...+ .+++. +-.-++++++.++..=++.|
T Consensus 53 ~kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irl-llky~pq~~i~~l~npIqYG 130 (418)
T KOG4570|consen 53 DKKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRL-LLKYDPQKAIYTLVNPIQYG 130 (418)
T ss_pred hhhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHH-HHccChHHHHHHHhCcchhc
Confidence 3334567677777888888888888899999988877764 222222 23333 33446779999999999999
Q ss_pred CCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhC
Q 048358 108 RTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFG 147 (541)
Q Consensus 108 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 147 (541)
+ -||.++++.++..+.+.++...|.++..+|....
T Consensus 131 i-----F~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 131 I-----FPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred c-----ccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 8 9999999999999999999999999888887665
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.10 E-value=30 Score=34.59 Aligned_cols=393 Identities=10% Similarity=0.025 Sum_probs=217.1
Q ss_pred HHHHhcCCC--CCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcc-cHHHHHHHHhccCCchHHHHHHHH
Q 048358 66 SLLFKQVKE--PNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKF-TLPFVIKSCAGLLCPSLGKQIHAH 142 (541)
Q Consensus 66 ~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~ 142 (541)
.+.++.... -+...|..++.---.....+.+..++..++.. -|... -|......=.+.|..+.+..+|+.
T Consensus 32 ~~~we~~~~~~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k-------yPl~~gyW~kfA~~E~klg~~~~s~~Vfer 104 (577)
T KOG1258|consen 32 LDYWEILSNDSLDFDAWTTLIQENDSIEDVDALREVYDIFLSK-------YPLCYGYWKKFADYEYKLGNAENSVKVFER 104 (577)
T ss_pred hhHhhccccchhcccchHHHHhccCchhHHHHHHHHHHHHHhh-------CccHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 344444433 34556777775544555556777778877754 44443 344444444678999999999999
Q ss_pred HHHhCCCCchhhHHHHHHHHH-cCCChHHHHHHHhhcCC------CChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCCcc
Q 048358 143 VCKFGLKSHSITENALLDLYG-KCDELIEAHKVFEEMTD------RDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIV 215 (541)
Q Consensus 143 ~~~~g~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 215 (541)
.+.. ++.+...|......+. ..|+.+...+.|+.... .+..-|...|.--..++++.....++++..+....
T Consensus 105 gv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~ 183 (577)
T KOG1258|consen 105 GVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLH 183 (577)
T ss_pred HHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhh
Confidence 9875 6667777766655444 45777777788877654 35567888888888888899999999888765555
Q ss_pred hHHHHHHHHHh---c------CChHHHHHHHHHHHHC----CCCCChHHHHHHHHHHH-ccCChHHHHHHHHHHHHhCCC
Q 048358 216 SWTAMISGYTH---I------GSYAEALDVFRQMQMV----GIEPDEISIVSVLPACA-QLGSLELGEWIHMYCDKNHLL 281 (541)
Q Consensus 216 ~~~~l~~~~~~---~------g~~~~A~~~~~~m~~~----~~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~ 281 (541)
.|+..-.-|.+ . ...+++.++-...... -.++.......-+.-.. ..+..+.+...+.....
T Consensus 184 ~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~---- 259 (577)
T KOG1258|consen 184 QLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVS---- 259 (577)
T ss_pred HhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHH----
Confidence 55544433322 1 1233333322222210 00011111111111110 01111111111111110
Q ss_pred ccHhHHHHHHHHHHhcCCHHHHHHHHHccCC-------C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 048358 282 RRTVICNALIEMYIKCGCINQASQLFDQMVE-------R----DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPND 350 (541)
Q Consensus 282 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 350 (541)
.--.+|-...........|+.-.+ | +..+|..-+.--...|+.+.+.-+|++..-.- ..=.
T Consensus 260 -------~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~ 331 (577)
T KOG1258|consen 260 -------IHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYD 331 (577)
T ss_pred -------HHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhH
Confidence 011122222233334444444322 2 45678888888889999999999998875421 1112
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCH-HHHHHHHHH
Q 048358 351 ITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM--PMKPDA-KIWGSLLSS 427 (541)
Q Consensus 351 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~-~~~~~l~~~ 427 (541)
..|-..+.-....|+.+.|..++....+- ..+..+.+...-.......|+++.|..+++.+ .. |+. ..-..-+..
T Consensus 332 efWiky~~~m~~~~~~~~~~~~~~~~~~i-~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~ 409 (577)
T KOG1258|consen 332 EFWIKYARWMESSGDVSLANNVLARACKI-HVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINW 409 (577)
T ss_pred HHHHHHHHHHHHcCchhHHHHHHHhhhhh-cCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhH
Confidence 23333344444448888888888777653 23333332222223334568999999999999 34 654 333334455
Q ss_pred HhhcCCHHHHHH---HHHHHhccCCCCcchHH----HHHHH-HHhcCCHHHHHHHHHHhhhC
Q 048358 428 CRTYSNLEIAVI---AMEHLLVLEPEDTGNYV----LLSNI-YAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 428 ~~~~~~~~~a~~---~~~~~~~~~~~~~~~~~----~l~~~-~~~~g~~~~A~~~~~~m~~~ 481 (541)
..+.|+.+.+.. ++....+ +..+..... ..++. +.-.++.+.|..++.++.+.
T Consensus 410 e~r~~~~~~~~~~~~l~s~~~~-~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~ 470 (577)
T KOG1258|consen 410 ERRKGNLEDANYKNELYSSIYE-GKENNGILEKLYVKFARLRYKIREDADLARIILLEANDI 470 (577)
T ss_pred HHHhcchhhhhHHHHHHHHhcc-cccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc
Confidence 678888888883 3333332 222333333 33332 33467899999999888664
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.08 E-value=14 Score=30.55 Aligned_cols=54 Identities=13% Similarity=0.106 Sum_probs=26.7
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhh
Q 048358 326 ANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRD 379 (541)
Q Consensus 326 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 379 (541)
..+|.+++...-.+-+...+-+--...-..|.-+-.+.|++..|.+.|..+..+
T Consensus 143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 345555555555554444332222223334444455566666666666655543
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=87.94 E-value=1.3 Score=26.36 Aligned_cols=28 Identities=21% Similarity=0.209 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 048358 419 KIWGSLLSSCRTYSNLEIAVIAMEHLLV 446 (541)
Q Consensus 419 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 446 (541)
.+++.+...|...|++++|..+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566666777777777777777777664
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=87.73 E-value=22 Score=32.57 Aligned_cols=158 Identities=10% Similarity=0.039 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhcCChH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHH
Q 048358 317 SWSTVIGGLANHGKAH---KAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLV 393 (541)
Q Consensus 317 ~~~~l~~~~~~~~~~~---~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 393 (541)
+...++.+|...+..+ +|..+++.+.... +-.+..+..-+..+.+.++.+.+.+.+..|.... .-....+...+
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~--~~~e~~~~~~l 162 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV--DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc--ccccchHHHHH
Confidence 5566777777766544 4555555554432 2224455555667777888888888888888742 21222334444
Q ss_pred HHH---HhcCCHHHHHHHHHhC---CCCCCHH-HHHHH-HHH---HhhcCC------HHHHHHHHHHHhcc--CCCCcch
Q 048358 394 DLL---GRAGRLDQALNIIEEM---PMKPDAK-IWGSL-LSS---CRTYSN------LEIAVIAMEHLLVL--EPEDTGN 454 (541)
Q Consensus 394 ~~~---~~~g~~~~A~~~~~~~---~~~p~~~-~~~~l-~~~---~~~~~~------~~~a~~~~~~~~~~--~~~~~~~ 454 (541)
..+ .... ...|...++.+ ...|... ....+ +.- ..+.++ ++...++++...+. .|-++.+
T Consensus 163 ~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 163 HHIKQLAEKS-PELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHhhC-cHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 433 3333 33454444444 2333332 11111 111 122222 44444445533321 1333332
Q ss_pred H---HHH----HHHHHhcCCHHHHHHHHHHh
Q 048358 455 Y---VLL----SNIYAKHGRWEDVSRMRKLI 478 (541)
Q Consensus 455 ~---~~l----~~~~~~~g~~~~A~~~~~~m 478 (541)
- ..+ +....+.++|++|.+.|+-.
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 2 222 34567889999999999854
|
It is also involved in sporulation []. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=87.65 E-value=3.5 Score=32.91 Aligned_cols=109 Identities=13% Similarity=0.096 Sum_probs=66.7
Q ss_pred HHHHHHHHH---HhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHH
Q 048358 351 ITFIGLLSA---CAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKP-DAKIWGSLLS 426 (541)
Q Consensus 351 ~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~ 426 (541)
...+.|+.. -...++.+++..+++.+.--..-.+...+ .-...+...|++++|.++|++..-.+ ....-..|..
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~--~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A 85 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDM--FDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLA 85 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccch--hHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHH
Confidence 344444443 34578999999999998753222223333 33456778999999999999994333 3333333333
Q ss_pred HHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048358 427 SCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIR 479 (541)
Q Consensus 427 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 479 (541)
.|.... -+ ..|...+......|...+|..+.+.+.
T Consensus 86 ~CL~al--------------~D----p~Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 86 LCLNAK--------------GD----AEWHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred HHHHhc--------------CC----hHHHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 333221 11 236666666667777777888877776
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.55 E-value=2 Score=37.13 Aligned_cols=84 Identities=6% Similarity=0.009 Sum_probs=41.9
Q ss_pred HhccCcHHHHHHHHHHhhhhcCCCCcH-hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHH-HHHhhcCCHHH
Q 048358 360 CAHTGFWNEGLMYFDSMKRDHHIEHKI-EHYGCLVDLLGRAGRLDQALNIIEEM-PMKPDAKIWGSLL-SSCRTYSNLEI 436 (541)
Q Consensus 360 ~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~-~~~~~~~~~~~ 436 (541)
|.....+..|+..|.+.... .|+. .-|+.=+..+.+..+++.+..-..+. .+.|+..--..++ .+......+++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~---nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI---NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHHhc---CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 44445566666655555542 3444 33344444555555555555444333 4555543333333 33455556666
Q ss_pred HHHHHHHHhc
Q 048358 437 AVIAMEHLLV 446 (541)
Q Consensus 437 a~~~~~~~~~ 446 (541)
|+..+.++.+
T Consensus 97 aI~~Lqra~s 106 (284)
T KOG4642|consen 97 AIKVLQRAYS 106 (284)
T ss_pred HHHHHHHHHH
Confidence 6666666543
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=87.54 E-value=3.7 Score=26.29 Aligned_cols=48 Identities=19% Similarity=0.124 Sum_probs=36.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhc
Q 048358 454 NYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDR 527 (541)
Q Consensus 454 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 527 (541)
.+..++.++.+.|++++|.+..+.+.+ .+|++..+..+...+-.++.+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~--------------------------~eP~N~Qa~~L~~~i~~~i~k 50 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLE--------------------------IEPDNRQAQSLKELIEDKIQK 50 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--------------------------HTTS-HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHh--------------------------hCCCcHHHHHHHHHHHHHHhc
Confidence 456788899999999999999999876 468888887777766665543
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.47 E-value=1 Score=38.91 Aligned_cols=87 Identities=11% Similarity=0.080 Sum_probs=71.9
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHH
Q 048358 395 LLGRAGRLDQALNIIEEM-PMKPDAK-IWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVS 472 (541)
Q Consensus 395 ~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 472 (541)
-|....+++.|+.-|.+. .+.|+.. .|..=+-.+.+.++++.+..-..+++++.|+.......++..+.....+++|+
T Consensus 19 k~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred cccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHH
Confidence 345556788888877665 7788874 45555666788999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhC
Q 048358 473 RMRKLIRSK 481 (541)
Q Consensus 473 ~~~~~m~~~ 481 (541)
..+.+..+.
T Consensus 99 ~~Lqra~sl 107 (284)
T KOG4642|consen 99 KVLQRAYSL 107 (284)
T ss_pred HHHHHHHHH
Confidence 999987554
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=87.42 E-value=1.7 Score=27.76 Aligned_cols=34 Identities=21% Similarity=0.168 Sum_probs=26.2
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHH
Q 048358 423 SLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYV 456 (541)
Q Consensus 423 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 456 (541)
.+.-++.+.|++++|.+..+.+++.+|+|..+..
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 4556788999999999999999999999865443
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.27 E-value=40 Score=35.01 Aligned_cols=144 Identities=13% Similarity=0.179 Sum_probs=84.6
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCC-CCcchHHHHHHHHHhcCCh
Q 048358 152 SITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPY-TTIVSWTAMISGYTHIGSY 230 (541)
Q Consensus 152 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~g~~ 230 (541)
..+...++..+.-.|++++|-...-.|...+..-|.-.+..+...++......++=.-.. -++..|..++..+.. .+.
T Consensus 392 ~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~ 470 (846)
T KOG2066|consen 392 KKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDV 470 (846)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhccCCCCCcccCchHHHHHHHHHHH-HHH
Confidence 345677888888899999999999999888888888888777777776654433322222 245678888777776 222
Q ss_pred HHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHcc
Q 048358 231 AEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQM 310 (541)
Q Consensus 231 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 310 (541)
.-|.+.... .+++...-..++++ -. .+..+. -+ +......|+..|...++++.|..++-..
T Consensus 471 ----~~F~e~i~~-Wp~~Lys~l~iisa--~~----------~q~~q~-Se-~~~L~e~La~LYl~d~~Y~~Al~~ylkl 531 (846)
T KOG2066|consen 471 ----KGFLELIKE-WPGHLYSVLTIISA--TE----------PQIKQN-SE-STALLEVLAHLYLYDNKYEKALPIYLKL 531 (846)
T ss_pred ----HHHHHHHHh-CChhhhhhhHHHhh--cc----------hHHHhh-cc-chhHHHHHHHHHHHccChHHHHHHHHhc
Confidence 222222221 12222211111111 00 011111 01 1223344888888899999999888887
Q ss_pred CCCCh
Q 048358 311 VERDV 315 (541)
Q Consensus 311 ~~~~~ 315 (541)
.++++
T Consensus 532 k~~~v 536 (846)
T KOG2066|consen 532 QDKDV 536 (846)
T ss_pred cChHH
Confidence 66543
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.16 E-value=8.3 Score=38.36 Aligned_cols=56 Identities=16% Similarity=0.116 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 048358 285 VICNALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLK 345 (541)
Q Consensus 285 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 345 (541)
.-|..|.++....|++..|.+.|....+ |..|+-.+...|+.+....+-....+.|
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-----~~~LlLl~t~~g~~~~l~~la~~~~~~g 722 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLRARD-----LGSLLLLYTSSGNAEGLAVLASLAKKQG 722 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhhcc-----hhhhhhhhhhcCChhHHHHHHHHHHhhc
Confidence 3455555555555555555555544322 3334444444444444433333333333
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.02 E-value=41 Score=34.91 Aligned_cols=100 Identities=13% Similarity=-0.092 Sum_probs=57.3
Q ss_pred HHHHHcCCChHHHHHHHhcCCC--C---CcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHH
Q 048358 53 IDVCNSGGDLAYASLLFKQVKE--P---NVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSC 127 (541)
Q Consensus 53 ~~~~~~~~~~~~A~~~~~~~~~--~---~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~ 127 (541)
++.+.+.+.+++|+...+.... + -...+...|..+...|++++|-...-.|.. .+..-|......+
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g---------n~~~eWe~~V~~f 433 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG---------NNAAEWELWVFKF 433 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc---------chHHHHHHHHHHh
Confidence 5667777888888888776654 2 223566777888888888888877777753 2334455555555
Q ss_pred hccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHc
Q 048358 128 AGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGK 164 (541)
Q Consensus 128 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 164 (541)
...++......+ +-......+..+|..++..+..
T Consensus 434 ~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 434 AELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ccccccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 555444322211 1111111344566666665554
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=86.97 E-value=52 Score=36.05 Aligned_cols=111 Identities=11% Similarity=0.121 Sum_probs=53.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHH--HHHHHHHHHcc
Q 048358 185 AWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEIS--IVSVLPACAQL 262 (541)
Q Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~ 262 (541)
.|.+....+.+.+.+++|.-.|+...+ ..--+.+|...|+|.+|+.+..++-. ..|... -..|...+...
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gk-----lekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~ 1012 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGK-----LEKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQ 1012 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhcc-----HHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHc
Confidence 344444444555555555555544432 12234555666677776666665531 111111 13344555555
Q ss_pred CChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccC
Q 048358 263 GSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMV 311 (541)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 311 (541)
++.-+|-++..+.... ....+..|++...|++|.++.....
T Consensus 1013 ~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1013 RKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred ccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 5555555554443321 1223444555566666666554443
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=86.60 E-value=0.91 Score=36.66 Aligned_cols=128 Identities=11% Similarity=0.076 Sum_probs=77.5
Q ss_pred HHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHH
Q 048358 83 MIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLY 162 (541)
Q Consensus 83 ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 162 (541)
++..+.+.+.+......++.+...+. ..+....+.++..|++.++.+....+++ ..+..-...++..+
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~-----~~~~~~~~~L~~ly~~~~~~~~l~~~L~-------~~~~yd~~~~~~~c 80 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENK-----ENNPDLHTLLLELYIKYDPYEKLLEFLK-------TSNNYDLDKALRLC 80 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTST-----C-SHHHHHHHHHHHHCTTTCCHHHHTTT-------SSSSS-CTHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhccc-----ccCHHHHHHHHHHHHhcCCchHHHHHcc-------cccccCHHHHHHHH
Confidence 46667777888888888888887664 5567778888888888877777776654 11223335567777
Q ss_pred HcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 048358 163 GKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGS 229 (541)
Q Consensus 163 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~ 229 (541)
.+.|.+++|.-++.++...+... ..+...++++.|.+.+... .++..|..++..+...+.
T Consensus 81 ~~~~l~~~a~~Ly~~~~~~~~al-----~i~~~~~~~~~a~e~~~~~--~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 81 EKHGLYEEAVYLYSKLGNHDEAL-----EILHKLKDYEEAIEYAKKV--DDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HTTTSHHHHHHHHHCCTTHTTCS-----STSSSTHCSCCCTTTGGGC--SSSHHHHHHHHHHCTSTC
T ss_pred HhcchHHHHHHHHHHcccHHHHH-----HHHHHHccHHHHHHHHHhc--CcHHHHHHHHHHHHhcCc
Confidence 77788877777766653311100 0112223333444333333 346778888887776654
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=86.58 E-value=3 Score=34.54 Aligned_cols=35 Identities=23% Similarity=0.285 Sum_probs=26.4
Q ss_pred CHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 048358 433 NLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGR 467 (541)
Q Consensus 433 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 467 (541)
-+++|+.-|++++.++|+...++.+++++|...+.
T Consensus 50 miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 50 MIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 35667777888888999999999999999886653
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=86.49 E-value=11 Score=27.64 Aligned_cols=63 Identities=11% Similarity=0.184 Sum_probs=48.5
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHH
Q 048358 330 KAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVD 394 (541)
Q Consensus 330 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 394 (541)
+.-++.+-++.+....+.|++......+++|.+.+++..|.++|+.++.+.+ .+...|..++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 4556667777777788899999999999999999999999999998876433 24445665553
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=86.43 E-value=14 Score=31.50 Aligned_cols=75 Identities=20% Similarity=0.202 Sum_probs=54.7
Q ss_pred HhcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCC----CCcchHHHHHHHHHhcCCHHH
Q 048358 397 GRAGRLDQALNIIEEMPMKP--DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEP----EDTGNYVLLSNIYAKHGRWED 470 (541)
Q Consensus 397 ~~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~ 470 (541)
.+.|+ +.|.+.|-.+.-.| +.......+..|....+.++++.++-+++++.+ .|++.+..|+..|.+.|+++.
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 44455 66777777773233 333444444556668899999999999998653 368899999999999999998
Q ss_pred HH
Q 048358 471 VS 472 (541)
Q Consensus 471 A~ 472 (541)
|-
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 85
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.24 E-value=35 Score=33.41 Aligned_cols=387 Identities=11% Similarity=0.076 Sum_probs=189.2
Q ss_pred CCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHh-ccCCchHHHHHHHHHHHhCCCCchh
Q 048358 75 PNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCA-GLLCPSLGKQIHAHVCKFGLKSHSI 153 (541)
Q Consensus 75 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~g~~~~~~ 153 (541)
.|+..|...+.-+-+.+.+.+.-.+|..|.... +.++..|.....-.. ...+.+.|..++...++..+ .++.
T Consensus 103 ~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H------p~~~dLWI~aA~wefe~n~ni~saRalflrgLR~np-dsp~ 175 (568)
T KOG2396|consen 103 GDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH------PNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNP-DSPK 175 (568)
T ss_pred CCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC------CCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCC-CChH
Confidence 588899999988888888999999999999875 455566655444333 33448899999888887642 2333
Q ss_pred hHHHHHHH---HHcCCChHHHHHHHhhcCC-------CChhhHHHHH------H---------HHHhcCCHHH-HHHHHh
Q 048358 154 TENALLDL---YGKCDELIEAHKVFEEMTD-------RDIVAWNNLI------S---------GYARLGQMKK-ARMLFD 207 (541)
Q Consensus 154 ~~~~l~~~---~~~~g~~~~A~~~~~~~~~-------~~~~~~~~l~------~---------~~~~~~~~~~-A~~~~~ 207 (541)
.|....+. |+.. ...-.+.+..... .....|+... . .........+ -..+.+
T Consensus 176 Lw~eyfrmEL~~~~K--l~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~kel~k~i~d 253 (568)
T KOG2396|consen 176 LWKEYFRMELMYAEK--LRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLKELQKNIID 253 (568)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHHHHHHHHHH
Confidence 33322221 1110 0000000000000 0000111000 0 0000000000 011112
Q ss_pred cCC---CCCcchHHHHHH----HHHh---------------cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccC--
Q 048358 208 KMP---YTTIVSWTAMIS----GYTH---------------IGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLG-- 263 (541)
Q Consensus 208 ~~~---~~~~~~~~~l~~----~~~~---------------~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-- 263 (541)
.+. ..|+.+|..+.. .+.+ ....+....+|++..+. -|+...+...|..|...-
T Consensus 254 ~~~~~~~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~ 331 (568)
T KOG2396|consen 254 DLQSKAPDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKT--LPTESMWECYITFCLERFTF 331 (568)
T ss_pred HHhccCCCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHh
Confidence 221 224444443322 1111 11223344566666543 456666666666554322
Q ss_pred ----ChHHHHHHHHHHHHhC-CC-ccHhHHHHHHHHHHhcCCHH-HHHHHHHccCCCChhHHHHHHHHHHhcC-ChHHH-
Q 048358 264 ----SLELGEWIHMYCDKNH-LL-RRTVICNALIEMYIKCGCIN-QASQLFDQMVERDVVSWSTVIGGLANHG-KAHKA- 334 (541)
Q Consensus 264 ----~~~~a~~~~~~~~~~~-~~-~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a- 334 (541)
.......+++...+.+ .. .....|..+.-.++..+... -|..+..+....+...|..-+....... +++-.
T Consensus 332 ~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f 411 (568)
T KOG2396|consen 332 LRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLF 411 (568)
T ss_pred hhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHH
Confidence 2333344444444332 12 23445666665566555433 3444444555666666665555444221 21111
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCc-HHHH--HHHHHHhhhhcCCCCcHh-HHHHHHHHHHhcCCHHHHHHHHH
Q 048358 335 IHLFHEMQRLKVPPNDITFIGLLSACAHTGF-WNEG--LMYFDSMKRDHHIEHKIE-HYGCLVDLLGRAGRLDQALNIIE 410 (541)
Q Consensus 335 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~-~~~a--~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~ 410 (541)
.+++......-..+-...++... .|+ +... ..++...... + .|+.. .-+.+++-+.+.|-..+|...+.
T Consensus 412 ~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~-~-~~~~~tl~s~~l~~~~e~~~~~~ark~y~ 484 (568)
T KOG2396|consen 412 EELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLSV-I-GADSVTLKSKYLDWAYESGGYKKARKVYK 484 (568)
T ss_pred HHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHHh-c-CCceeehhHHHHHHHHHhcchHHHHHHHH
Confidence 11222222221122222333222 122 1111 1222233221 2 23333 33567777888888899999888
Q ss_pred hCC-CC-CCHHHHHHHHHHH--hhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048358 411 EMP-MK-PDAKIWGSLLSSC--RTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIR 479 (541)
Q Consensus 411 ~~~-~~-p~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 479 (541)
.+. .+ |+...|..++..- ...-+..-+..+|+.+..-...+++.|......-...|..+.+-.++.+..
T Consensus 485 ~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 485 SLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred HHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHhhccCCCcccccHHHHHHH
Confidence 872 22 4667777777651 222337778888888876555778888877776667787777777665543
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=86.12 E-value=50 Score=34.97 Aligned_cols=215 Identities=15% Similarity=0.081 Sum_probs=105.8
Q ss_pred HccCChHHHHHHHHHHHHhCCCccHh-------HHHHH-HHHHHhcCCHHHHHHHHHccCC--------CChhHHHHHHH
Q 048358 260 AQLGSLELGEWIHMYCDKNHLLRRTV-------ICNAL-IEMYIKCGCINQASQLFDQMVE--------RDVVSWSTVIG 323 (541)
Q Consensus 260 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l-~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~ 323 (541)
....++++|..++.++...-..|+.. .++.+ .......|+++.|.++.+.... ..+..+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34455666666655554432222111 22222 2233456777777776655422 24556677777
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHH---HHHHH--HHHhccCc--HHHHHHHHHHhhhhcCCC-----CcHhHHHH
Q 048358 324 GLANHGKAHKAIHLFHEMQRLKVPPNDIT---FIGLL--SACAHTGF--WNEGLMYFDSMKRDHHIE-----HKIEHYGC 391 (541)
Q Consensus 324 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~l~--~~~~~~g~--~~~a~~~~~~~~~~~~~~-----~~~~~~~~ 391 (541)
+..-.|++++|..+..+..+..-.-+... +..+. ..+...|. +......|......+... +-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 77788888888887776554321222222 22221 22445563 333333344333321111 11233344
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-----CCCCCH--HH--HHHHHHHHhhcCCHHHHHHHHHHHhccCCCC--cchHHHHH-
Q 048358 392 LVDLLGRAGRLDQALNIIEEM-----PMKPDA--KI--WGSLLSSCRTYSNLEIAVIAMEHLLVLEPED--TGNYVLLS- 459 (541)
Q Consensus 392 l~~~~~~~g~~~~A~~~~~~~-----~~~p~~--~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~l~- 459 (541)
+..++.+ .+.+..-.... ...|.. .. +..|+......|+.++|...+.++..+...+ ...|.+.+
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 4444444 33333222221 122322 22 2256667788999999999888887644221 12222222
Q ss_pred --H--HHHhcCCHHHHHHHHHH
Q 048358 460 --N--IYAKHGRWEDVSRMRKL 477 (541)
Q Consensus 460 --~--~~~~~g~~~~A~~~~~~ 477 (541)
. .-...|+.++|.....+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 1 23356888888777665
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=85.81 E-value=7.4 Score=28.34 Aligned_cols=44 Identities=18% Similarity=0.255 Sum_probs=30.4
Q ss_pred HHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 048358 439 IAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKS 482 (541)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 482 (541)
..+++.++.+|+|......++..+...|++++|.+.+-.+....
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 34555666778888888888888888888888887777776553
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.45 E-value=13 Score=33.81 Aligned_cols=33 Identities=18% Similarity=0.189 Sum_probs=16.8
Q ss_pred CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHh
Q 048358 413 PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLL 445 (541)
Q Consensus 413 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 445 (541)
|+-||..+++.++..+.+.+++..|.++.-.+.
T Consensus 130 GiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 130 GIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 444555555555555555555555555444444
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=85.31 E-value=5.5 Score=36.03 Aligned_cols=61 Identities=21% Similarity=0.141 Sum_probs=53.9
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 421 WGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 421 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
.+.+-.+|.+.++++.|..+.+.++.+.|+++.-+..-+-+|.+.|.+..|..-++...+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 4455567899999999999999999999999999999999999999999999988887664
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=85.12 E-value=14 Score=29.02 Aligned_cols=70 Identities=16% Similarity=0.168 Sum_probs=41.8
Q ss_pred CCcHhHHHHHHHHHHhcCCHHH---HHHHHHhC-C-CCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCc
Q 048358 383 EHKIEHYGCLVDLLGRAGRLDQ---ALNIIEEM-P-MKPD--AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDT 452 (541)
Q Consensus 383 ~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~-~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 452 (541)
.++..+--.+..++.+..+.++ -+.+++++ + -.|+ ......|.-++.+.+++++++++++.+++.+|+|.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 4555555666677776655443 44566665 2 2332 23333445557777777777777777777777764
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=85.06 E-value=7.9 Score=37.30 Aligned_cols=120 Identities=17% Similarity=0.242 Sum_probs=65.7
Q ss_pred hcCChHHHHHHHHH-HHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHH
Q 048358 327 NHGKAHKAIHLFHE-MQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQA 405 (541)
Q Consensus 327 ~~~~~~~a~~~~~~-m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 405 (541)
..|+.-.|-.-+.. +....-.|+...... ..+...|+++.+.+.+....+. +.....+...+++...+.|++++|
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhhhchhhHHHH
Confidence 34555555443333 333222343333322 2345667777777777666542 334444556777777777777777
Q ss_pred HHHHHhC-CCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC
Q 048358 406 LNIIEEM-PMK-PDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPE 450 (541)
Q Consensus 406 ~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 450 (541)
...-..| +-+ -++.............|-++++...++++..++|+
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 7777666 211 13333333333345566677777777777776654
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.06 E-value=27 Score=31.05 Aligned_cols=222 Identities=14% Similarity=0.205 Sum_probs=122.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHC---CC--CCChHHHHHHHHHHHccCChHHHHHHHHHHHHh----C-CCccHh
Q 048358 216 SWTAMISGYTHIGSYAEALDVFRQMQMV---GI--EPDEISIVSVLPACAQLGSLELGEWIHMYCDKN----H-LLRRTV 285 (541)
Q Consensus 216 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~---~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~ 285 (541)
+...++..+.+.|++++.+..|.+|+.- .+ .-+..+.++++...+...+.+....+++.-.+. . -..=..
T Consensus 67 ALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFK 146 (440)
T KOG1464|consen 67 ALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFK 146 (440)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeee
Confidence 3445667777888888888777776532 11 224456677777666666666655555433221 1 000012
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHccCCC---------------ChhHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCC
Q 048358 286 ICNALIEMYIKCGCINQASQLFDQMVER---------------DVVSWSTVIGGLANHGKAHKAIHLFHEMQRL-KVPPN 349 (541)
Q Consensus 286 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~ 349 (541)
+-..|...|...+++.+..++++++... -...|..-|+.|....+-.+...+|++.... ..-|.
T Consensus 147 TNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPH 226 (440)
T KOG1464|consen 147 TNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPH 226 (440)
T ss_pred ccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCc
Confidence 3345777888888888888888777220 1235677778888887777777777776442 12344
Q ss_pred HHHHHHHHHHH-----hccCcHHHHHHHHHHhhhhc---CCCCcHh--HHHHHHHHHHhcCCHHHHHHHHHh--C-C--C
Q 048358 350 DITFIGLLSAC-----AHTGFWNEGLMYFDSMKRDH---HIEHKIE--HYGCLVDLLGRAGRLDQALNIIEE--M-P--M 414 (541)
Q Consensus 350 ~~~~~~l~~~~-----~~~g~~~~a~~~~~~~~~~~---~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~--~-~--~ 414 (541)
+... .+++-| .+.|.+++|..-|-+..+.+ |.+.... -|..|...+.+.|- .=|+. . + -
T Consensus 227 PlIm-GvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~i-----NPFDsQEAKPyKN 300 (440)
T KOG1464|consen 227 PLIM-GVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGI-----NPFDSQEAKPYKN 300 (440)
T ss_pred hHHH-hHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCC-----CCCcccccCCCCC
Confidence 4443 344444 35688888765444443322 2222222 24444555554441 11111 1 2 2
Q ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 048358 415 KPDAKIWGSLLSSCRTYSNLEIAVIAMEHL 444 (541)
Q Consensus 415 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 444 (541)
.|.......++.+|. .+++.+-.+++..-
T Consensus 301 dPEIlAMTnlv~aYQ-~NdI~eFE~Il~~~ 329 (440)
T KOG1464|consen 301 DPEILAMTNLVAAYQ-NNDIIEFERILKSN 329 (440)
T ss_pred CHHHHHHHHHHHHHh-cccHHHHHHHHHhh
Confidence 355667788888874 45555555554443
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.84 E-value=26 Score=30.60 Aligned_cols=50 Identities=10% Similarity=0.181 Sum_probs=25.7
Q ss_pred CChHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 048358 329 GKAHKAIHLFHEMQRL--KVPPN---DITFIGLLSACAHTGFWNEGLMYFDSMKR 378 (541)
Q Consensus 329 ~~~~~a~~~~~~m~~~--~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 378 (541)
.++++|+..|++.-+- |-..+ ...+..+...-...+++.+|+.+|+.+.+
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566555554331 11111 12233333334456778888888887765
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.78 E-value=4.1 Score=34.80 Aligned_cols=62 Identities=21% Similarity=0.204 Sum_probs=40.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC
Q 048358 390 GCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPED 451 (541)
Q Consensus 390 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (541)
+.-++.+.+.+...+|+...+.- +-+| |..+-..++..++-.|++++|..-++-+-++.|..
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 34455666777777777766554 5556 34445556666777777877777777777777664
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=84.31 E-value=2.4 Score=22.72 Aligned_cols=27 Identities=22% Similarity=0.261 Sum_probs=12.2
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHhccCC
Q 048358 423 SLLSSCRTYSNLEIAVIAMEHLLVLEP 449 (541)
Q Consensus 423 ~l~~~~~~~~~~~~a~~~~~~~~~~~~ 449 (541)
.+...+...|+++.|...+++.++..|
T Consensus 6 ~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 6 NLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 333444444444444444444444433
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.19 E-value=64 Score=34.63 Aligned_cols=26 Identities=15% Similarity=0.216 Sum_probs=14.4
Q ss_pred HHHHHHHHHHcCCChHHHHHHHhcCC
Q 048358 48 LVTKMIDVCNSGGDLAYASLLFKQVK 73 (541)
Q Consensus 48 ~~~~l~~~~~~~~~~~~A~~~~~~~~ 73 (541)
-|..|+..|...|..++|+++|....
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~ 531 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLV 531 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHh
Confidence 34555555555555555555555444
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=82.60 E-value=17 Score=26.80 Aligned_cols=62 Identities=16% Similarity=0.208 Sum_probs=46.8
Q ss_pred HHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 048358 291 IEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIG 355 (541)
Q Consensus 291 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 355 (541)
+..+.+.|++++|..+.+....||...|-+|-. .+.|-.+++..-+.+|...| .|...+|..
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Faa 107 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFVA 107 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 455778899999999999888888888887754 35677777777788888877 666666544
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.48 E-value=62 Score=33.19 Aligned_cols=15 Identities=13% Similarity=-0.303 Sum_probs=8.2
Q ss_pred hHHHHHHHHHHHHhC
Q 048358 265 LELGEWIHMYCDKNH 279 (541)
Q Consensus 265 ~~~a~~~~~~~~~~~ 279 (541)
...+..+++...+.|
T Consensus 228 ~~~a~~~~~~~a~~g 242 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG 242 (552)
T ss_pred hhHHHHHHHHHHhhc
Confidence 345555565555554
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=82.30 E-value=54 Score=32.31 Aligned_cols=77 Identities=12% Similarity=0.072 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCC-cHhHHHHHH
Q 048358 317 SWSTVIGGLANHGKAHKAIHLFHEMQRLKVPP--NDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEH-KIEHYGCLV 393 (541)
Q Consensus 317 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~ 393 (541)
+-..+..++.+.|+.++|++.+++|.+.. ++ +......|+.++...+.+.++..++.+-... ..+. -..+|+..+
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi-~lpkSAti~YTaAL 338 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQALLAKYDDI-SLPKSATICYTAAL 338 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc-cCCchHHHHHHHHH
Confidence 34456777778899999999999987653 22 3346677889999999999999988887532 2222 234555544
Q ss_pred HH
Q 048358 394 DL 395 (541)
Q Consensus 394 ~~ 395 (541)
-.
T Consensus 339 Lk 340 (539)
T PF04184_consen 339 LK 340 (539)
T ss_pred HH
Confidence 33
|
The molecular function of this protein is uncertain. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=81.83 E-value=5.3 Score=33.13 Aligned_cols=103 Identities=9% Similarity=0.072 Sum_probs=37.9
Q ss_pred CCCCCH-HHHHHHHHHHhhcC-----------CHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048358 413 PMKPDA-KIWGSLLSSCRTYS-----------NLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 413 ~~~p~~-~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 480 (541)
.+.|+. .++..+..++...+ .+++|.+.|+++...+|.|. .|..-+.+. ++|-++..++..
T Consensus 63 ~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne-~Y~ksLe~~------~kap~lh~e~~~ 135 (186)
T PF06552_consen 63 KINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNE-LYRKSLEMA------AKAPELHMEIHK 135 (186)
T ss_dssp HH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-H-HHHHHHHHH------HTHHHHHHHHHH
T ss_pred hcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcH-HHHHHHHHH------HhhHHHHHHHHH
Confidence 456653 56666666653322 36778888888888999975 444433333 357777777776
Q ss_pred CCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHh
Q 048358 481 KSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQD 526 (541)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 526 (541)
.+...-..-. ...-..-....+....+---|+.+|++....|
T Consensus 136 ~~~~~q~~~~----~~~~~~~~~~~k~kk~sd~~ydv~gwvil~~g 177 (186)
T PF06552_consen 136 QGLGQQAMGG----ASSSSSSAKSSKKKKSSDFKYDVFGWVILAVG 177 (186)
T ss_dssp SSS-------------------------------------------
T ss_pred HHhhhhhccC----CCCCCCCccccccccccchhhhhcchHHHHHH
Confidence 6543221000 00000000111223344445788888776555
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.82 E-value=40 Score=30.55 Aligned_cols=58 Identities=14% Similarity=0.052 Sum_probs=50.5
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048358 422 GSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIR 479 (541)
Q Consensus 422 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 479 (541)
......|...|.+.+|.++.++++.++|-+...+..|...++..|+--.|..-++++.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3344568999999999999999999999999999999999999999777777776664
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=81.75 E-value=3.3 Score=25.26 Aligned_cols=27 Identities=15% Similarity=0.254 Sum_probs=22.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 048358 456 VLLSNIYAKHGRWEDVSRMRKLIRSKS 482 (541)
Q Consensus 456 ~~l~~~~~~~g~~~~A~~~~~~m~~~~ 482 (541)
..|+.+|...|+.+.|.++++++...|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 467889999999999999999988654
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=81.42 E-value=16 Score=31.07 Aligned_cols=42 Identities=14% Similarity=0.071 Sum_probs=19.5
Q ss_pred cCCchHHHHHHHHHHHh---CCCCchhhHHHHHHHHHcCCChHHH
Q 048358 130 LLCPSLGKQIHAHVCKF---GLKSHSITENALLDLYGKCDELIEA 171 (541)
Q Consensus 130 ~~~~~~a~~~~~~~~~~---g~~~~~~~~~~l~~~~~~~g~~~~A 171 (541)
..+.+.+.+++-.+++. +-.+|+..+.+|+..+.+.|+++.|
T Consensus 153 krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 153 KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 44445555554444432 1133444555555555555554444
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=81.05 E-value=11 Score=27.52 Aligned_cols=46 Identities=20% Similarity=0.344 Sum_probs=30.9
Q ss_pred CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHH
Q 048358 413 PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLL 458 (541)
Q Consensus 413 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 458 (541)
..-|++......+.+|.+.+++..|+++++-....-..+...|..+
T Consensus 37 DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~ 82 (103)
T cd00923 37 DLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYI 82 (103)
T ss_pred ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHH
Confidence 4567888888888888888888888888877664333233344443
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=80.90 E-value=13 Score=27.60 Aligned_cols=47 Identities=21% Similarity=0.331 Sum_probs=30.4
Q ss_pred CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHH
Q 048358 413 PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLS 459 (541)
Q Consensus 413 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 459 (541)
.+-|++.+....+.+|.+.+++..|.++++-....-.+....|..++
T Consensus 40 DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 40 DLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp SB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred ccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 45688888888888888888888888888887755444333555544
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=80.70 E-value=3.4 Score=22.64 Aligned_cols=30 Identities=17% Similarity=0.172 Sum_probs=24.6
Q ss_pred CCHHHHHHHHHHHhccCCCCcchHHHHHHH
Q 048358 432 SNLEIAVIAMEHLLVLEPEDTGNYVLLSNI 461 (541)
Q Consensus 432 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 461 (541)
|+.+.|..+|++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567889999999998888888888877654
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.48 E-value=12 Score=32.72 Aligned_cols=61 Identities=7% Similarity=-0.081 Sum_probs=50.3
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 048358 422 GSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKS 482 (541)
Q Consensus 422 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 482 (541)
.....++...|++-++++...+.+...|.|..+|+.-+.+.+..=+.++|.+-+.+..+..
T Consensus 234 lNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 234 LNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 3344556778899999999999999999999999998888888888888888888877653
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 65.6 bits (158), Expect = 3e-11
Identities = 23/211 (10%), Positives = 61/211 (28%), Gaps = 7/211 (3%)
Query: 216 SWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYC 275
+ T + + S A + + P E + +L SL++ +
Sbjct: 59 ALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQH 118
Query: 276 DKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVER-------DVVSWSTVIGGLANH 328
+ L + A + + + A L + + ++ V+ G A
Sbjct: 119 SQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQ 178
Query: 329 GKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEH 388
G + +++ ++ + P+ +++ L + ++ +
Sbjct: 179 GAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALF 238
Query: 389 YGCLVDLLGRAGRLDQALNIIEEMPMKPDAK 419
L+ RA L + + P
Sbjct: 239 TAVLLSEEDRATVLKAVHKVKPTFSLPPQLP 269
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 59.1 bits (141), Expect = 3e-09
Identities = 42/350 (12%), Positives = 96/350 (27%), Gaps = 40/350 (11%)
Query: 104 LRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYG 163
L D + P + L +++ G L + + + L A
Sbjct: 79 LEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCL 138
Query: 164 KCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMISG 223
D+L AH + ++ R L + + A++ G
Sbjct: 139 LTDQLPLAHHLLV------------------VHHGQRQKRKLLT------LDMYNAVMLG 174
Query: 224 YTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLE------LGEWIHMYCDK 277
+ G++ E + V ++ G+ PD +S + L + L +
Sbjct: 175 WARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKL 234
Query: 278 NHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHL 337
L ++ +K + + + V + S ++ + L
Sbjct: 235 QALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNT-SKLLRDVYAKDGRVSYPKL 293
Query: 338 FHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLG 397
++ L+ + L S L + ++ + +
Sbjct: 294 HLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQW-------- 345
Query: 398 RAGRLDQALNIIEEMPMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVL 447
L +AL + + + SL E+ + ++ L L
Sbjct: 346 -EKALCRALRETKNRLEREVYEGRFSLYPFLCLLDEREVVRMLLQVLQAL 394
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.1 bits (155), Expect = 7e-11
Identities = 92/614 (14%), Positives = 175/614 (28%), Gaps = 153/614 (24%)
Query: 8 LSIKELEDRFVPILQS--CENLIELKKIHTQ---ILKYLLSQSNFLVTKMIDVCNSGGDL 62
K+++D IL +++I K + + LLS+ +V K ++ +
Sbjct: 33 FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE---EVLRI 89
Query: 63 AY---ASLLFKQVKEP--NVFLYNAMI-RAYTNNHLYGLAINLY-KQMLRDPRTGSLILP 115
Y S + + ++P +Y R Y +N ++ N+ Q R L L
Sbjct: 90 NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA-KYNVSRLQPYLKLRQALLELR 148
Query: 116 DKFTLPFVI--------KSC-AGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCD 166
V+ K+ A +C S Q CK K + C+
Sbjct: 149 PA---KNVLIDGVLGSGKTWVALDVCLSYKVQ-----CKMDFKIFWLN-------LKNCN 193
Query: 167 ELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTH 226
+ + L ++ +R I S A +
Sbjct: 194 S-----------PETVLEMLQKL---LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 227 IGSYAEAL----DV--------F----------RQMQ----MVGIEPDEISIVSVLPACA 260
Y L +V F R Q + IS+
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 261 QLGSLEL-GEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVER-DVVSW 318
L +++ L R + N ++ ++ + D +W
Sbjct: 300 PDEVKSLLLKYLDCRPQD--LPREVLTTNPRR--------LSIIAESIRDGLATWD--NW 347
Query: 319 STVIGGLANHGKAHKAIHLF------HEMQR----LKVPPND--ITFIGLLSACAHTGFW 366
V N K I E ++ L V P I LLS W
Sbjct: 348 KHV-----NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP-TILLSL-----IW 396
Query: 367 NEGLMYFDSM------------KRDHHIEHKIEHYGCLVDLLGRAGRLDQALN--IIEEM 412
+ ++ D M ++ E I ++L + + AL+ I++
Sbjct: 397 FD-VIKSDVMVVVNKLHKYSLVEKQPK-ESTISIPSIYLELKVKL-ENEYALHRSIVDHY 453
Query: 413 PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVS 472
+ + Y I HL +E + L ++ R+ +
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIG----HHLKNIEHPE--RMTLFRMVFLDF-RFLE-- 504
Query: 473 RMRKLIRSKSMKKTPG--CSLIEVNNEVQEFVSGDDTKP--FLKDIFWLLELLA--LHQD 526
+K+ + G + ++ + ++ +D K + I L + L
Sbjct: 505 --QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICS 562
Query: 527 RAKDVIDI--MYED 538
+ D++ I M ED
Sbjct: 563 KYTDLLRIALMAED 576
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 4e-04
Identities = 25/182 (13%), Positives = 54/182 (29%), Gaps = 12/182 (6%)
Query: 294 YIKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITF 353
Y+ ++ + LA+H + + V + TF
Sbjct: 44 YLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTF 103
Query: 354 IGLLSAC-AHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM 412
+ + ++ + + L H +E V +L + RLD A +++M
Sbjct: 104 LLMAASIYFYDQNPDAALRTL-------HQGDSLECMAMTVQILLKLDRLDLARKELKKM 156
Query: 413 -PMKPD---AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRW 468
D ++ + +S L+ A + + + + GRW
Sbjct: 157 QDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRW 216
Query: 469 ED 470
E
Sbjct: 217 EA 218
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 41.7 bits (97), Expect = 6e-04
Identities = 30/163 (18%), Positives = 55/163 (33%), Gaps = 12/163 (7%)
Query: 325 LANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFD---SMKRDHH 381
G +A+ L+ + + P L S G E LM++ +
Sbjct: 19 KREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA 77
Query: 382 IEHKIEHYGCLVDLLGRAGRLDQALNIIEE-MPMKPD-AKIWGSLLSSCRTYSNLEIAVI 439
+ Y + + L + AL + + P A +L S + N+ A+
Sbjct: 78 -----DAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIA 132
Query: 440 AMEHLLVLEPEDTGNYVLLSNIYAKHGRWE-DVSRMRKLIRSK 481
+ L L+P+ Y L++ W RM+KL+
Sbjct: 133 SYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIV 175
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 6e-04
Identities = 39/335 (11%), Positives = 87/335 (25%), Gaps = 39/335 (11%)
Query: 156 NALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKM----PY 211
L L+ +T +VA + G L +++ + + P
Sbjct: 302 GGKQAL-ETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP- 359
Query: 212 TTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWI 271
+V+ + G + + L V Q G+ PD++ ++ L +++ +
Sbjct: 360 DQVVAIASNGGGKQALETVQRLLPVLC--QAHGLTPDQVVAIASNGGKQALETVQ--RLL 415
Query: 272 HMYCDKNHLLRRTVI-----CNALIEMYIKCGCINQASQLFDQMVE---RDVVSWSTVIG 323
+ C + L V+ + + + + Q VV+ ++ G
Sbjct: 416 PVLCQAHGLTPDQVVAIASHDGGKQAL----ETVQRLLPVLCQTHGLTPAQVVAIASHDG 471
Query: 324 GLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFD---SMKRDH 380
G + + + + L P + + L + D
Sbjct: 472 GKQALETVQQLLPVLCQAHGLT-PDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQ 530
Query: 381 HIEHKIEHYGCLVDLLGRAGR----LDQALNIIEEMPMKPD-AKIWGSLLSSCRTYSNLE 435
+ G L R L QA + PD S + ++
Sbjct: 531 VVAIA--SNGGGKQALETVQRLLPVLCQAHGL------TPDQVVAIASNGGGKQALETVQ 582
Query: 436 IAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWED 470
+ + L +
Sbjct: 583 RLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQR 617
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 541 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.98 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.98 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.94 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.91 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.88 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.88 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.85 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.85 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.84 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.84 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.84 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.84 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.83 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.83 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.83 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.82 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.82 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.82 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.82 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.81 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.81 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.8 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.8 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.8 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.79 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.73 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.71 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.71 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.7 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.68 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.64 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.64 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.64 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.64 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.64 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.64 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.64 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.63 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.63 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.62 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.62 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.62 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.62 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.59 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.59 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.59 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.59 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.58 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.58 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.56 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.56 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.56 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.56 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.55 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.52 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.52 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.5 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.49 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.49 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.47 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.47 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.46 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.46 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.46 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.45 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.44 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.43 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.42 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.4 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.4 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.39 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.38 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.37 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.35 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.33 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.32 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.31 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.27 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.27 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.26 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.25 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.22 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.22 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.22 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.21 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.2 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.16 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.16 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.15 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.14 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.13 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.12 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.11 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.11 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.09 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.08 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.06 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.06 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.05 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.04 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.03 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.02 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.0 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.98 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.98 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.98 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.98 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.96 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.95 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.94 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.91 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.91 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.9 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.9 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.88 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.88 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.87 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.85 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.85 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.85 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.84 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.84 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.84 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.8 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.79 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.79 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.79 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.77 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.76 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.76 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.76 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.76 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.75 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.74 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.74 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.74 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.74 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.73 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.73 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.7 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.7 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.69 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.69 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.68 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.67 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.66 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.65 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.65 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.64 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.63 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.63 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.63 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.63 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.62 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.61 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.61 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.6 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.6 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.6 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.6 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.59 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.58 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.57 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.56 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.51 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.51 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.48 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.48 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.47 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.46 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.45 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.45 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.42 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.41 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.41 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.4 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.39 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.36 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.35 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.34 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.33 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.31 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.3 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.24 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.18 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.18 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.17 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.15 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.13 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.11 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.09 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.06 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.05 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.01 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.0 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.99 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.76 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.76 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.74 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.6 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.59 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.5 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.49 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.45 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.44 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 97.38 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.35 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.32 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.28 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.27 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 97.05 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.98 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.9 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.86 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.84 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.82 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.79 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.73 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.34 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.11 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.05 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.97 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.93 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.82 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 95.48 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 95.19 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 95.05 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 95.0 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.86 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.75 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 94.42 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.27 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.13 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 90.75 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 90.7 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 90.39 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 90.28 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 90.01 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 89.41 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 89.3 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 89.2 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 89.14 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 89.02 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 88.96 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 88.89 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 88.19 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 88.0 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 87.9 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 87.45 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 87.39 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 87.33 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 87.04 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 86.79 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 85.71 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 85.3 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 84.9 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 83.95 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 82.64 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 82.4 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 81.99 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 81.25 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 80.35 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-41 Score=345.31 Aligned_cols=443 Identities=12% Similarity=0.024 Sum_probs=393.8
Q ss_pred CchhHHHHHHHHHHcCCChHHHHHHHhcCCC--CCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHH
Q 048358 44 QSNFLVTKMIDVCNSGGDLAYASLLFKQVKE--PNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLP 121 (541)
Q Consensus 44 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~ 121 (541)
+++..++.++..|.+.|++++|..+|+++.. |+..++..++.+|.+.|++++|..+|+.+... +++..+++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~ 154 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY-------NRSSACRY 154 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-------GTCHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc-------ccchhHHH
Confidence 5778899999999999999999999999864 78889999999999999999999999998754 78889999
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHh---------------CCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCC--CC-h
Q 048358 122 FVIKSCAGLLCPSLGKQIHAHVCKF---------------GLKSHSITENALLDLYGKCDELIEAHKVFEEMTD--RD-I 183 (541)
Q Consensus 122 ~ll~~~~~~~~~~~a~~~~~~~~~~---------------g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~ 183 (541)
.++.+|.+.|++++|.++|+++... |.+++..+|+.++.+|.+.|++++|.+.|+++.+ |+ .
T Consensus 155 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 234 (597)
T 2xpi_A 155 LAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCY 234 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhh
Confidence 9999999999999999999853211 2234578999999999999999999999999865 32 2
Q ss_pred hhHHH--------------------------------------HHHHHHhcCCHHHHHHHHhcCCC--CCcchHHHHHHH
Q 048358 184 VAWNN--------------------------------------LISGYARLGQMKKARMLFDKMPY--TTIVSWTAMISG 223 (541)
Q Consensus 184 ~~~~~--------------------------------------l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~ 223 (541)
..+.. ++..|.+.|++++|.++|+++.. +++.+|+.++.+
T Consensus 235 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 314 (597)
T 2xpi_A 235 EAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADT 314 (597)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHH
T ss_pred HHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHH
Confidence 23332 24556678999999999999987 788999999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHH
Q 048358 224 YTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQA 303 (541)
Q Consensus 224 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 303 (541)
|.+.|++++|..+|+++.+.+ +.+..++..++.++...|++++|..+++.+.+.. +.+..+++.++.+|.+.|++++|
T Consensus 315 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 392 (597)
T 2xpi_A 315 LFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEA 392 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHH
Confidence 999999999999999999875 4577889999999999999999999999998664 56788999999999999999999
Q ss_pred HHHHHccCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhc
Q 048358 304 SQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDH 380 (541)
Q Consensus 304 ~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 380 (541)
.++|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+..
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 471 (597)
T 2xpi_A 393 RRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF 471 (597)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999998843 467899999999999999999999999999876 6688999999999999999999999999998753
Q ss_pred CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC
Q 048358 381 HIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-------PMKPD--AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPED 451 (541)
Q Consensus 381 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (541)
+.+..+|+.++..|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|++++|+..++++.+.+|++
T Consensus 472 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 549 (597)
T 2xpi_A 472 --QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTND 549 (597)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCC
T ss_pred --CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 567889999999999999999999999988 44787 7899999999999999999999999999999999
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHH
Q 048358 452 TGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALH 524 (541)
Q Consensus 452 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 524 (541)
+.+|..++.+|.+.|++++|.+.++++.+ ++|+++.++..|+++|..
T Consensus 550 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--------------------------~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 550 ANVHTAIALVYLHKKIPGLAITHLHESLA--------------------------ISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHTTC-
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHh--------------------------cCCCChHHHHHHHHHHhc
Confidence 99999999999999999999999999876 468889999999988753
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-40 Score=340.96 Aligned_cols=444 Identities=11% Similarity=0.032 Sum_probs=376.7
Q ss_pred HHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCch
Q 048358 55 VCNSGGDLAYASLLFKQVKEPNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPS 134 (541)
Q Consensus 55 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 134 (541)
.+.+.|.+..+...+..++.++...|+.++..+.+.|++++|+.+|++|... .|+..++..++.+|.+.|+++
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-------~p~~~~~~~l~~~~~~~g~~~ 134 (597)
T 2xpi_A 62 NTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI-------TGNPNDAFWLAQVYCCTGDYA 134 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------HCCHHHHHHHHHHHHHTTCHH
T ss_pred cccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh-------CCCchHHHHHHHHHHHcCcHH
Confidence 3566788888899999888889999999999999999999999999999864 678899999999999999999
Q ss_pred HHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCCC-------------------ChhhHHHHHHHHHh
Q 048358 135 LGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDR-------------------DIVAWNNLISGYAR 195 (541)
Q Consensus 135 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~l~~~~~~ 195 (541)
.|..+++.+... +++..+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+
T Consensus 135 ~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 212 (597)
T 2xpi_A 135 RAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTN 212 (597)
T ss_dssp HHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHH
Confidence 999999988653 678899999999999999999999999965443 37899999999999
Q ss_pred cCCHHHHHHHHhcCCCCC---cchHHHH--------------------------------------HHHHHhcCChHHHH
Q 048358 196 LGQMKKARMLFDKMPYTT---IVSWTAM--------------------------------------ISGYTHIGSYAEAL 234 (541)
Q Consensus 196 ~~~~~~A~~~~~~~~~~~---~~~~~~l--------------------------------------~~~~~~~g~~~~A~ 234 (541)
.|++++|.+.|+++...+ ...+..+ +..|.+.|++++|.
T Consensus 213 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 292 (597)
T 2xpi_A 213 LSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAE 292 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHH
Confidence 999999999999986322 2333322 45566789999999
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC--
Q 048358 235 DVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE-- 312 (541)
Q Consensus 235 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 312 (541)
++|+++.+. +++..++..++..+.+.|++++|..+|+.+.+.+ +.+..++..++.+|.+.|++++|..+++++.+
T Consensus 293 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 369 (597)
T 2xpi_A 293 DYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH 369 (597)
T ss_dssp HHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Confidence 999999865 6899999999999999999999999999999876 34788899999999999999999999998843
Q ss_pred -CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHH
Q 048358 313 -RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGC 391 (541)
Q Consensus 313 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 391 (541)
.+..+|+.++..|.+.|++++|.++|+++.+.. +.+..+|..++.+|.+.|++++|+++|+++.+. .+.+..+|..
T Consensus 370 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~ 446 (597)
T 2xpi_A 370 PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL--FQGTHLPYLF 446 (597)
T ss_dssp TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TTTCSHHHHH
T ss_pred cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHH
Confidence 478899999999999999999999999998864 556889999999999999999999999999874 3567889999
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHHhcc------CCCC-cchHHHHHHHH
Q 048358 392 LVDLLGRAGRLDQALNIIEEM-PMK-PDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVL------EPED-TGNYVLLSNIY 462 (541)
Q Consensus 392 l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~l~~~~ 462 (541)
++.+|.+.|++++|.++|+++ ... .+..+|..++..|.+.|++++|++.|+++.+. +|++ ..+|..++.+|
T Consensus 447 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~ 526 (597)
T 2xpi_A 447 LGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAY 526 (597)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHH
Confidence 999999999999999999998 333 46899999999999999999999999999987 4443 67899999999
Q ss_pred HhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCcccccccC
Q 048358 463 AKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMYEDI 539 (541)
Q Consensus 463 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~i 539 (541)
.+.|++++|.++++++.+. +|++..++..|+.+|...|+.++|.+.+++++
T Consensus 527 ~~~g~~~~A~~~~~~~~~~--------------------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 577 (597)
T 2xpi_A 527 RKLKMYDAAIDALNQGLLL--------------------------STNDANVHTAIALVYLHKKIPGLAITHLHESL 577 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHH--------------------------SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh--------------------------CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999999999998763 47888999999999999999999999888765
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=6.7e-29 Score=240.65 Aligned_cols=372 Identities=12% Similarity=0.066 Sum_probs=295.1
Q ss_pred HHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHH
Q 048358 84 IRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYG 163 (541)
Q Consensus 84 l~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 163 (541)
...+.+.|++++|...++.+.+.. |.+...+..+...+...|+++.|...++..++.. +.+..++..+..++.
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~ 78 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE------PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYK 78 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHH
Confidence 344566777777777777766653 3444555566666667777777777777776654 445667777777777
Q ss_pred cCCChHHHHHHHhhcCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHH
Q 048358 164 KCDELIEAHKVFEEMTD--R-DIVAWNNLISGYARLGQMKKARMLFDKMP---YTTIVSWTAMISGYTHIGSYAEALDVF 237 (541)
Q Consensus 164 ~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~ 237 (541)
+.|++++|...|+++.. | +..+|..+..++.+.|++++|.+.|+++. +.+...+..+...+...|++++|.+.|
T Consensus 79 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (388)
T 1w3b_A 79 ERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 77777777777776653 3 34467777777777777777777776654 234456777888888889999999999
Q ss_pred HHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CC
Q 048358 238 RQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE---RD 314 (541)
Q Consensus 238 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~ 314 (541)
+++.... +.+..++..+...+...|+++.|...++.+.+.+ +.+...+..+...+...|++++|...|++... .+
T Consensus 159 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 236 (388)
T 1w3b_A 159 LKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH 236 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCC
Confidence 8888763 3356778888888889999999999998888875 34577888899999999999999999987733 35
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHH
Q 048358 315 VVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVD 394 (541)
Q Consensus 315 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 394 (541)
..++..+...|...|++++|...|+++.+.+ +.+..++..+..++.+.|++++|...|+++.+. .+.+..++..+..
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 313 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLAN 313 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHH
Confidence 7788999999999999999999999999875 556788999999999999999999999999875 3677888999999
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 048358 395 LLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGR 467 (541)
Q Consensus 395 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 467 (541)
.+.+.|++++|.+.++++ ...| +..++..+..++.+.|++++|+..++++++..|.++.+|..++.++...|+
T Consensus 314 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 314 IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999999999999987 5556 578899999999999999999999999999999999999999998887764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=9.1e-29 Score=239.70 Aligned_cols=373 Identities=14% Similarity=0.072 Sum_probs=327.1
Q ss_pred HHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCH
Q 048358 123 VIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTD---RDIVAWNNLISGYARLGQM 199 (541)
Q Consensus 123 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 199 (541)
+...+.+.|++++|.+.+..+.+.. +.+...+..+...+...|++++|...++.... .+..+|..+...+.+.|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 3556778899999999999998875 44566777888899999999999999988764 4667999999999999999
Q ss_pred HHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHH
Q 048358 200 KKARMLFDKMP---YTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCD 276 (541)
Q Consensus 200 ~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 276 (541)
++|.+.|+++. +.++.+|..+..++...|++++|...|+++.+.. +.+...+..+...+...|++++|...+..+.
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999999875 3355689999999999999999999999999763 3344566677888899999999999999999
Q ss_pred HhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 048358 277 KNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITF 353 (541)
Q Consensus 277 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 353 (541)
+.. +.+..+|..+...|...|++++|...|+++.+ .+...|..+...+...|++++|...|++..... +.+..++
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 240 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH 240 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHH
Confidence 875 44578899999999999999999999999843 356788999999999999999999999998865 5567889
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHhhc
Q 048358 354 IGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMK-PDAKIWGSLLSSCRTY 431 (541)
Q Consensus 354 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~ 431 (541)
..+..++...|++++|+..|+++.+. .+.+..+|..+...+.+.|++++|.+.|+++ ... ++..++..+...+...
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc
Confidence 99999999999999999999999874 3556788999999999999999999999998 333 4788999999999999
Q ss_pred CCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCCh
Q 048358 432 SNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFL 511 (541)
Q Consensus 432 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 511 (541)
|++++|+..++++++..|+++.++..++.+|.+.|++++|...++++.+ .+|+.
T Consensus 319 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--------------------------~~p~~ 372 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--------------------------ISPTF 372 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--------------------------TCTTC
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------------------------hCCCC
Confidence 9999999999999999999999999999999999999999999999875 46888
Q ss_pred hHHHHHHHHHHHHHhc
Q 048358 512 KDIFWLLELLALHQDR 527 (541)
Q Consensus 512 ~~~~~~l~~~~~~~~~ 527 (541)
..++..++.++..+|+
T Consensus 373 ~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 373 ADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHHHHTCC
T ss_pred HHHHHhHHHHHHHccC
Confidence 9999999999988763
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6.3e-28 Score=237.61 Aligned_cols=183 Identities=14% Similarity=0.152 Sum_probs=166.0
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCC---------hHHHHHHHHHHHHhCCCccHh
Q 048358 215 VSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGS---------LELGEWIHMYCDKNHLLRRTV 285 (541)
Q Consensus 215 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 285 (541)
..++.+|.+|++.|++++|+++|++|.+.|++||..||+++|.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35788899999999999999999999999999999999999999987654 678999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcc----CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 048358 286 ICNALIEMYIKCGCINQASQLFDQM----VERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACA 361 (541)
Q Consensus 286 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 361 (541)
+|+++|.+|++.|++++|.++|++| ..||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||+.|+.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999999988 457999999999999999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHh
Q 048358 362 HTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGR 398 (541)
Q Consensus 362 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 398 (541)
+.|++++|.++|++|... +..|+..||+.++..|..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHS
T ss_pred hCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhc
Confidence 999999999999999875 889999999999988875
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=228.53 Aligned_cols=200 Identities=10% Similarity=0.116 Sum_probs=172.0
Q ss_pred HHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCC---------H
Q 048358 231 AEALDVFRQMQMVGIEPDE-ISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGC---------I 300 (541)
Q Consensus 231 ~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~ 300 (541)
..+..+.+++.+.++.+.. ..++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3455666777777766544 46888999999999999999999999999999999999999999987765 6
Q ss_pred HHHHHHHHcc----CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 048358 301 NQASQLFDQM----VERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSM 376 (541)
Q Consensus 301 ~~A~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 376 (541)
++|.++|++| ..||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 8899999999 558999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHhhc
Q 048358 377 KRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM---PMKPDAKIWGSLLSSCRTY 431 (541)
Q Consensus 377 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~ 431 (541)
.+. |+.|+..+|+.|+.+|++.|+.++|.++|++| +..|+..||+.++..+...
T Consensus 167 ~~~-G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VES-EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred Hhc-CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 975 99999999999999999999999999999999 7899999999999987653
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.9e-25 Score=221.81 Aligned_cols=424 Identities=10% Similarity=-0.025 Sum_probs=313.1
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHHhcCCC--CCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHH
Q 048358 46 NFLVTKMIDVCNSGGDLAYASLLFKQVKE--PNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFV 123 (541)
Q Consensus 46 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~l 123 (541)
...+......+.+.|++++|...|+++.+ |+...|..+..++.+.|++++|+..++++.+.+ +.+..++..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l 79 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK------PDYSKVLLRR 79 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------SCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC------hHHHHHHHHH
Confidence 34556667777788888888888887764 777778888888888888888888888887764 5556777778
Q ss_pred HHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCC----CChhhHHHH---HHHHHhc
Q 048358 124 IKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTD----RDIVAWNNL---ISGYARL 196 (541)
Q Consensus 124 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l---~~~~~~~ 196 (541)
..++...|++++|...++.+.+.+. ++......++..+........+.+.+..+.. ++...+... .......
T Consensus 80 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (514)
T 2gw1_A 80 ASANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENL 158 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CC
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCC
Confidence 8888888888888888888877653 3444444444444443333333333322211 000000000 0000111
Q ss_pred CCHHHHHHHHhcCC---------CC-CcchHHHHHHHHHh---cCChHHHHHHHHHHHH-----CCCCC--------ChH
Q 048358 197 GQMKKARMLFDKMP---------YT-TIVSWTAMISGYTH---IGSYAEALDVFRQMQM-----VGIEP--------DEI 250 (541)
Q Consensus 197 ~~~~~A~~~~~~~~---------~~-~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~-----~~~~p--------~~~ 250 (541)
.....+...+.... .+ +...+......+.. .|++++|...|+++.+ ..-.| +..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (514)
T 2gw1_A 159 PSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAI 238 (514)
T ss_dssp CCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHH
T ss_pred chhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHH
Confidence 11111222222221 11 23445555555554 8999999999999987 32122 345
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHh
Q 048358 251 SIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE---RDVVSWSTVIGGLAN 327 (541)
Q Consensus 251 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~ 327 (541)
++..+...+...|+++.|...++.+.+.... ..++..++.+|...|++++|...++.+.+ .+..++..+...+..
T Consensus 239 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 316 (514)
T 2gw1_A 239 SLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFI 316 (514)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHH
Confidence 6777888899999999999999999988654 88899999999999999999999998844 367789999999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHH
Q 048358 328 HGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALN 407 (541)
Q Consensus 328 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 407 (541)
.|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+.+.|++++|..
T Consensus 317 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~ 393 (514)
T 2gw1_A 317 LQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALK 393 (514)
T ss_dssp TTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999999875 5567889999999999999999999999998753 5567788999999999999999999
Q ss_pred HHHhC----CCCCC----HHHHHHHHHHHhh---cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 048358 408 IIEEM----PMKPD----AKIWGSLLSSCRT---YSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRK 476 (541)
Q Consensus 408 ~~~~~----~~~p~----~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 476 (541)
.++++ +..++ ...+..+...+.. .|++++|...++++++..|.++.++..++.+|.+.|++++|...++
T Consensus 394 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 394 QYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFE 473 (514)
T ss_dssp HHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99987 22222 4488889999999 9999999999999999999999999999999999999999999999
Q ss_pred HhhhC
Q 048358 477 LIRSK 481 (541)
Q Consensus 477 ~m~~~ 481 (541)
++.+.
T Consensus 474 ~a~~~ 478 (514)
T 2gw1_A 474 ESADL 478 (514)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98763
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.8e-25 Score=219.63 Aligned_cols=427 Identities=11% Similarity=-0.028 Sum_probs=321.6
Q ss_pred HHHhccChhHHHHHHHHHHHhccCCchhHHHHHHHHHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHcCCChhHH
Q 048358 20 ILQSCENLIELKKIHTQILKYLLSQSNFLVTKMIDVCNSGGDLAYASLLFKQVKE---PNVFLYNAMIRAYTNNHLYGLA 96 (541)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~A 96 (541)
.+...+..+.+...++.+++.. |++.++..+..+|.+.|++++|...|+++.+ .+...|..+..++.+.|++++|
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 92 (514)
T 2gw1_A 15 QFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADA 92 (514)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHH
Confidence 3344577888889999998876 7899999999999999999999999998764 4556889999999999999999
Q ss_pred HHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHH---HHHHcCCChHHHHH
Q 048358 97 INLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALL---DLYGKCDELIEAHK 173 (541)
Q Consensus 97 ~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~---~~~~~~g~~~~A~~ 173 (541)
...|+.+...+ +++......++..+........+.+.+..+...+..|+......-. ...........+..
T Consensus 93 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (514)
T 2gw1_A 93 MFDLSVLSLNG------DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMAS 166 (514)
T ss_dssp HHHHHHHHHSS------SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHH
T ss_pred HHHHHHHHhcC------CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHH
Confidence 99999999886 5666666666666555544444444444443332222221111111 11111111222222
Q ss_pred HHhhcCC---------C-ChhhHHHHHHHHHh---cCCHHHHHHHHhcCCC----------------C-CcchHHHHHHH
Q 048358 174 VFEEMTD---------R-DIVAWNNLISGYAR---LGQMKKARMLFDKMPY----------------T-TIVSWTAMISG 223 (541)
Q Consensus 174 ~~~~~~~---------~-~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~----------------~-~~~~~~~l~~~ 223 (541)
.+..... | +...+......+.. .|++++|...|+++.. + +..++..+..+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (514)
T 2gw1_A 167 FFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIF 246 (514)
T ss_dssp HHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHH
Confidence 2222211 1 13344444554554 8889999998887643 1 24578888999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHH
Q 048358 224 YTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQA 303 (541)
Q Consensus 224 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 303 (541)
+...|++++|...|+++.+.. |+...+..+...+...|+++.|...++.+.+.. +.+..++..+...|...|++++|
T Consensus 247 ~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 323 (514)
T 2gw1_A 247 KFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQA 323 (514)
T ss_dssp HHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHH
T ss_pred HHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHH
Confidence 999999999999999998874 447788889999999999999999999998765 34577899999999999999999
Q ss_pred HHHHHccCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhc
Q 048358 304 SQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDH 380 (541)
Q Consensus 304 ~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 380 (541)
...|+++.+ .+..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+....
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 402 (514)
T 2gw1_A 324 GKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELE 402 (514)
T ss_dssp HHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 999998733 367789999999999999999999999998864 5567888999999999999999999999998743
Q ss_pred CCCCc----HhHHHHHHHHHHh---cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC
Q 048358 381 HIEHK----IEHYGCLVDLLGR---AGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPED 451 (541)
Q Consensus 381 ~~~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (541)
.-.++ ...+..+...+.. .|++++|.+.++++ ...| +..++..+...+...|++++|...++++++..|.+
T Consensus 403 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 482 (514)
T 2gw1_A 403 NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTM 482 (514)
T ss_dssp HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSH
T ss_pred hccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcccc
Confidence 22222 3378999999999 99999999999987 3344 57888899999999999999999999999999998
Q ss_pred cchHHHH
Q 048358 452 TGNYVLL 458 (541)
Q Consensus 452 ~~~~~~l 458 (541)
+..+..+
T Consensus 483 ~~~~~~~ 489 (514)
T 2gw1_A 483 EEKLQAI 489 (514)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877765
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.94 E-value=5.5e-24 Score=215.44 Aligned_cols=420 Identities=10% Similarity=0.030 Sum_probs=329.9
Q ss_pred chhHHHHHHHHHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHH
Q 048358 45 SNFLVTKMIDVCNSGGDLAYASLLFKQVKE---PNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLP 121 (541)
Q Consensus 45 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~ 121 (541)
....+..+...+.+.|++++|...|+++.+ .+...|..+..++.+.|++++|+..|+++.+.+ +.+..++.
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~ 97 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK------PDHSKALL 97 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------TTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CchHHHHH
Confidence 345677788889999999999999998764 467788889999999999999999999998876 66778889
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCCC------ChhhHHHHHHHHHh
Q 048358 122 FVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDR------DIVAWNNLISGYAR 195 (541)
Q Consensus 122 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~ 195 (541)
.+..++...|++++|...++ ..... |+. ....+..+...+....|...++.+... ........+..+..
T Consensus 98 ~la~~~~~~g~~~~A~~~~~-~~~~~--~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 172 (537)
T 3fp2_A 98 RRASANESLGNFTDAMFDLS-VLSLN--GDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFG 172 (537)
T ss_dssp HHHHHHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHH-HHhcC--CCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHH
Confidence 99999999999999999996 43322 222 122344555556667888888888652 22233455666777
Q ss_pred cCCHHHHHHHHhcCCCCCcc---hHHHHHHHHHhc--------CChHHHHHHHHHHHHCCCCCCh--------HHHHHHH
Q 048358 196 LGQMKKARMLFDKMPYTTIV---SWTAMISGYTHI--------GSYAEALDVFRQMQMVGIEPDE--------ISIVSVL 256 (541)
Q Consensus 196 ~~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~--------g~~~~A~~~~~~m~~~~~~p~~--------~~~~~ll 256 (541)
..+.+.+...+......+.. ....+...+... |++++|..+|+++.+. .|+. .++..+.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g 250 (537)
T 3fp2_A 173 IFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTG 250 (537)
T ss_dssp TSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHH
T ss_pred hcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHH
Confidence 78888888888777765543 344444443332 4789999999999865 4442 2466666
Q ss_pred HHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHhcCChHH
Q 048358 257 PACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE---RDVVSWSTVIGGLANHGKAHK 333 (541)
Q Consensus 257 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 333 (541)
..+...|+++.|...+..+.+... +..++..+...|...|++++|...|+++.+ .+..+|..+...+...|++++
T Consensus 251 ~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 328 (537)
T 3fp2_A 251 IFHFLKNNLLDAQVLLQESINLHP--TPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKN 328 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCC--CHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcccHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHH
Confidence 778889999999999999998753 477889999999999999999999998843 467789999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 048358 334 AIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM- 412 (541)
Q Consensus 334 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 412 (541)
|...|+++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.|+++
T Consensus 329 A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 405 (537)
T 3fp2_A 329 AKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQYDIAK 405 (537)
T ss_dssp HHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999998875 5567889999999999999999999999998853 556778899999999999999999999986
Q ss_pred C-------CCCCHHHHHHHHHHHhhc----------CCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 048358 413 P-------MKPDAKIWGSLLSSCRTY----------SNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMR 475 (541)
Q Consensus 413 ~-------~~p~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 475 (541)
. .......+......+... |++++|+..++++++..|+++.++..++.+|.+.|++++|.+.+
T Consensus 406 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 485 (537)
T 3fp2_A 406 RLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELF 485 (537)
T ss_dssp HHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 1 111233345555667777 99999999999999999999999999999999999999999999
Q ss_pred HHhhhCC
Q 048358 476 KLIRSKS 482 (541)
Q Consensus 476 ~~m~~~~ 482 (541)
++..+..
T Consensus 486 ~~al~~~ 492 (537)
T 3fp2_A 486 EDSAILA 492 (537)
T ss_dssp HHHHHHC
T ss_pred HHHHHhC
Confidence 9987753
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3e-25 Score=224.72 Aligned_cols=424 Identities=9% Similarity=0.012 Sum_probs=329.1
Q ss_pred cchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHH
Q 048358 77 VFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITEN 156 (541)
Q Consensus 77 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 156 (541)
...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|+++.|.+.++.+++.+ +.+..++.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 97 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD------PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALL 97 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHH
Confidence 4567788889999999999999999999876 6788899999999999999999999999999986 44778889
Q ss_pred HHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCCC------CcchHHHHHHHHHhcCCh
Q 048358 157 ALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYT------TIVSWTAMISGYTHIGSY 230 (541)
Q Consensus 157 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~g~~ 230 (541)
.+..++...|++++|...|+.+.. +.......+..+...+...+|...++.+... ........+..+....+.
T Consensus 98 ~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 98 RRASANESLGNFTDAMFDLSVLSL-NGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhc-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 999999999999999999975532 2222233344556666678888888877542 122344555666777777
Q ss_pred HHHHHHHHHHHHCCCCCChHHHHHHHH-HHHc--------cCChHHHHHHHHHHHHhCCCcc------HhHHHHHHHHHH
Q 048358 231 AEALDVFRQMQMVGIEPDEISIVSVLP-ACAQ--------LGSLELGEWIHMYCDKNHLLRR------TVICNALIEMYI 295 (541)
Q Consensus 231 ~~A~~~~~~m~~~~~~p~~~~~~~ll~-~~~~--------~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~ 295 (541)
+.+...+...... .+....+...+. .+.. .|+++.|..+++.+.+...... ..++..+...+.
T Consensus 177 ~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~ 254 (537)
T 3fp2_A 177 HLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHF 254 (537)
T ss_dssp HHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHH
Confidence 7776665554322 333222322222 2222 2478889999998887653321 235777788899
Q ss_pred hcCCHHHHHHHHHccC--CCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 048358 296 KCGCINQASQLFDQMV--ERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYF 373 (541)
Q Consensus 296 ~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 373 (541)
..|++++|...|+++. .|+..++..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...|
T Consensus 255 ~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 9999999999999883 3567788889999999999999999999998875 567888999999999999999999999
Q ss_pred HHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC
Q 048358 374 DSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPED 451 (541)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (541)
+++.+.. +.+...+..+...+...|++++|.+.++++ ...| +...+..+...+...|++++|+..++++++..|.+
T Consensus 334 ~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 411 (537)
T 3fp2_A 334 QKAQSLN--PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ 411 (537)
T ss_dssp HHHHHHC--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc
Confidence 9998753 455678899999999999999999999988 3344 56788888999999999999999999999887665
Q ss_pred cch------HHHHHHHHHhc----------CCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHH
Q 048358 452 TGN------YVLLSNIYAKH----------GRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIF 515 (541)
Q Consensus 452 ~~~------~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 515 (541)
... +..++.++.+. |++++|...++++.+ .+|++..++
T Consensus 412 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--------------------------~~p~~~~~~ 465 (537)
T 3fp2_A 412 EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE--------------------------LDPRSEQAK 465 (537)
T ss_dssp SSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH--------------------------HCTTCHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH--------------------------hCCCCHHHH
Confidence 544 44556788888 999999999999875 368888999
Q ss_pred HHHHHHHHHHhcccCCcccccccC
Q 048358 516 WLLELLALHQDRAKDVIDIMYEDI 539 (541)
Q Consensus 516 ~~l~~~~~~~~~~~~a~~~~~~~i 539 (541)
..++.+|..+|+.++|.+.+++++
T Consensus 466 ~~l~~~~~~~g~~~~A~~~~~~al 489 (537)
T 3fp2_A 466 IGLAQLKLQMEKIDEAIELFEDSA 489 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHH
Confidence 999999999999999999888765
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-23 Score=206.60 Aligned_cols=362 Identities=11% Similarity=0.057 Sum_probs=252.8
Q ss_pred chhhHHHHHHHHHcCCChHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHhcCC---CCCcchHHHHHHHH
Q 048358 151 HSITENALLDLYGKCDELIEAHKVFEEMTD---RDIVAWNNLISGYARLGQMKKARMLFDKMP---YTTIVSWTAMISGY 224 (541)
Q Consensus 151 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~ 224 (541)
+...+..+...+.+.|++++|...|+++.+ .+..+|..+..++...|++++|...|+++. +.+..+|..++.+|
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 344444555555555555555555554432 234455555555555555555555555443 23455677777777
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCh----HHHHHH------------HHHHHccCChHHHHHHHHHHHHhCCCccHhHHH
Q 048358 225 THIGSYAEALDVFRQMQMVGIEPDE----ISIVSV------------LPACAQLGSLELGEWIHMYCDKNHLLRRTVICN 288 (541)
Q Consensus 225 ~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 288 (541)
...|++++|...|+++... .|+. ..+..+ ...+...|+++.|...++.+.+.. +.+..++.
T Consensus 105 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 181 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRE 181 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHH
Confidence 7777777777777777754 3433 333333 344777888888888888888764 44677888
Q ss_pred HHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH---------
Q 048358 289 ALIEMYIKCGCINQASQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGL--------- 356 (541)
Q Consensus 289 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l--------- 356 (541)
.++.+|...|++++|...|+++.+ .+..+|..+..+|...|++++|...|+++.... +.+...+..+
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~ 260 (450)
T 2y4t_A 182 LRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKL 260 (450)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHH
Confidence 899999999999999999988743 467889999999999999999999999998754 3344444444
Q ss_pred ---HHHHhccCcHHHHHHHHHHhhhhcCCCCc--HhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHh
Q 048358 357 ---LSACAHTGFWNEGLMYFDSMKRDHHIEHK--IEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCR 429 (541)
Q Consensus 357 ---~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 429 (541)
...|...|++++|...|+.+.+...-.+. ...|..+...+.+.|++++|+..++++ ...| +..+|..+..+|.
T Consensus 261 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 340 (450)
T 2y4t_A 261 IESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYL 340 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 78899999999999999999875311111 457888999999999999999999987 4455 6889999999999
Q ss_pred hcCCHHHHHHHHHHHhccCCCCcchHHHHHHH------------HHhcC-----CHHHHHHHHHH-hhhCCCccCCceeE
Q 048358 430 TYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNI------------YAKHG-----RWEDVSRMRKL-IRSKSMKKTPGCSL 491 (541)
Q Consensus 430 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~-m~~~~~~~~~~~~~ 491 (541)
..|++++|...++++++..|.++..+..++.+ |...| +.+++.+.+++ .....+...+.-
T Consensus 341 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~-- 418 (450)
T 2y4t_A 341 IEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNE-- 418 (450)
T ss_dssp HTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSH--
T ss_pred HhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCc--
Confidence 99999999999999999999999999998844 44444 45666776665 332221110000
Q ss_pred EEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCc
Q 048358 492 IEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVI 532 (541)
Q Consensus 492 ~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~ 532 (541)
...+.....+..++..|+.+++.+...
T Consensus 419 --------------~~~~~a~~~~~~i~~ay~~L~d~~~r~ 445 (450)
T 2y4t_A 419 --------------EEKKKAEKKFIDIAAAKEVLSDPEMRK 445 (450)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred --------------hHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 000113456778888999888776543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4.6e-23 Score=203.74 Aligned_cols=316 Identities=14% Similarity=0.084 Sum_probs=272.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 048358 182 DIVAWNNLISGYARLGQMKKARMLFDKMP---YTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPA 258 (541)
Q Consensus 182 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 258 (541)
+...+..+...+.+.|++++|...|+++. +.+..+|..++.++...|++++|+..|+++.+.+ +.+...+..+...
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 45688899999999999999999999875 3467899999999999999999999999999875 4567788899999
Q ss_pred HHccCChHHHHHHHHHHHHhCCCccH---hHHHHH------------HHHHHhcCCHHHHHHHHHccCC---CChhHHHH
Q 048358 259 CAQLGSLELGEWIHMYCDKNHLLRRT---VICNAL------------IEMYIKCGCINQASQLFDQMVE---RDVVSWST 320 (541)
Q Consensus 259 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 320 (541)
+...|+++.|...++.+.+... .+. ..+..+ ...+...|++++|...|+++.+ .+..++..
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 182 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELREL 182 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 9999999999999999988653 233 455555 4558999999999999998843 47788999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHH--------
Q 048358 321 VIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCL-------- 392 (541)
Q Consensus 321 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l-------- 392 (541)
++.+|...|++++|..+|+++.+.. +.+..++..+..+|...|++++|...|+.+.... +.+...+..+
T Consensus 183 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 183 RAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHH
Confidence 9999999999999999999998865 6678899999999999999999999999998753 4445555555
Q ss_pred ----HHHHHhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 048358 393 ----VDLLGRAGRLDQALNIIEEM-PMKPD-----AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIY 462 (541)
Q Consensus 393 ----~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 462 (541)
...+.+.|++++|...|+++ ...|+ ...+..+...+.+.|++++|+..++++++..|+++.+|..++.+|
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 339 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAY 339 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 88999999999999999998 44554 457888889999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcc
Q 048358 463 AKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRA 528 (541)
Q Consensus 463 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 528 (541)
...|++++|...++++.+ ++|+++.++..|+.+...+++.
T Consensus 340 ~~~~~~~~A~~~~~~al~--------------------------~~p~~~~~~~~l~~~~~~~~~~ 379 (450)
T 2y4t_A 340 LIEEMYDEAIQDYETAQE--------------------------HNENDQQIREGLEKAQRLLKQS 379 (450)
T ss_dssp HHTTCHHHHHHHHHHHHT--------------------------TSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHH--------------------------hCcchHHHHHHHHHHHHHhhcc
Confidence 999999999999999876 4688888888888776666543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.3e-21 Score=183.26 Aligned_cols=324 Identities=15% Similarity=0.100 Sum_probs=230.3
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHhcCC---CCCcchHHHHHHHHH
Q 048358 152 SITENALLDLYGKCDELIEAHKVFEEMTD---RDIVAWNNLISGYARLGQMKKARMLFDKMP---YTTIVSWTAMISGYT 225 (541)
Q Consensus 152 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~ 225 (541)
+..+..+...+...|++++|...|+++.+ .+..++..+...+...|++++|...|+++. +.+...|..+..++.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 44556666667777777777777766543 234455555555555666666655555543 123345555555555
Q ss_pred hcCChHHHHHHHHHHHHCCCCC---Ch-HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHH
Q 048358 226 HIGSYAEALDVFRQMQMVGIEP---DE-ISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCIN 301 (541)
Q Consensus 226 ~~g~~~~A~~~~~~m~~~~~~p---~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 301 (541)
..|++++|...|+++.+. .| +. ..+..+.... ....+..+...+...|+++
T Consensus 83 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~-----------------------~~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKAD-----------------------EMQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHTTCHH
T ss_pred HcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHccCHH
Confidence 556666666555555543 23 11 1111110000 0111223467788889999
Q ss_pred HHHHHHHccCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 048358 302 QASQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKR 378 (541)
Q Consensus 302 ~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 378 (541)
+|...++++.+ .+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...|+...+
T Consensus 138 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 138 AAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99988888733 466788888888999999999999999988875 66778888888899999999999999998887
Q ss_pred hcCCCCcHhHHH------------HHHHHHHhcCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHhhcCCHHHHHHH
Q 048358 379 DHHIEHKIEHYG------------CLVDLLGRAGRLDQALNIIEEM-PMKPD-A----KIWGSLLSSCRTYSNLEIAVIA 440 (541)
Q Consensus 379 ~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~l~~~~~~~~~~~~a~~~ 440 (541)
.. +.+...+. .+...+.+.|++++|...++++ ...|+ . ..+..+...+...|++++|+..
T Consensus 217 ~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 294 (359)
T 3ieg_A 217 LD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRI 294 (359)
T ss_dssp HC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 53 33333333 3366789999999999999987 33444 2 2355577789999999999999
Q ss_pred HHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHH
Q 048358 441 MEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLEL 520 (541)
Q Consensus 441 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~ 520 (541)
++++++..|+++.++..++.+|.+.|++++|.+.++++.+ .+|++..++..|+.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--------------------------~~p~~~~~~~~l~~ 348 (359)
T 3ieg_A 295 CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--------------------------HNENDQQIREGLEK 348 (359)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--------------------------TCTTCHHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------------------------cCCCChHHHHHHHH
Confidence 9999999999999999999999999999999999999875 46889999999999
Q ss_pred HHHHHhccc
Q 048358 521 LALHQDRAK 529 (541)
Q Consensus 521 ~~~~~~~~~ 529 (541)
++..+++.+
T Consensus 349 ~~~~~~~~~ 357 (359)
T 3ieg_A 349 AQRLLKQSQ 357 (359)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 998887643
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=7.2e-20 Score=174.75 Aligned_cols=322 Identities=9% Similarity=-0.029 Sum_probs=236.9
Q ss_pred CcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCC--C-ChhhHHHHHHH
Q 048358 116 DKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTD--R-DIVAWNNLISG 192 (541)
Q Consensus 116 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~ 192 (541)
+...+..+...+...|+++.|...++.+++.. +.+..++..+..++...|++++|...|+++.+ | +...+..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 34567788889999999999999999999976 44678899999999999999999999999865 3 66789999999
Q ss_pred HHhcCCHHHHHHHHhcCCCCCc------chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChH
Q 048358 193 YARLGQMKKARMLFDKMPYTTI------VSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLE 266 (541)
Q Consensus 193 ~~~~~~~~~A~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 266 (541)
+...|++++|...|++....++ ..+..+...+. ...+..+...+...|+++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 9999999999999998864333 33333311100 011222233344445555
Q ss_pred HHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 048358 267 LGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAIHLFHEMQR 343 (541)
Q Consensus 267 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 343 (541)
.|...++.+.+.. +.+..++..+...+...|++++|...++++.+ .+..++..+...+...|++++|...|++..+
T Consensus 138 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 138 AAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555555544433 23455666677777777777777777766633 3556677777777777888888888877776
Q ss_pred CCCCCCHHHHH------------HHHHHHhccCcHHHHHHHHHHhhhhcCCCCcH----hHHHHHHHHHHhcCCHHHHHH
Q 048358 344 LKVPPNDITFI------------GLLSACAHTGFWNEGLMYFDSMKRDHHIEHKI----EHYGCLVDLLGRAGRLDQALN 407 (541)
Q Consensus 344 ~~~~p~~~~~~------------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~ 407 (541)
.. +.+...+. .+...+...|++++|...++.+.+.. +.+. ..+..+...+...|++++|.+
T Consensus 217 ~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 217 LD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 53 33333332 33666888999999999999998753 2233 335567889999999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 048358 408 IIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKH 465 (541)
Q Consensus 408 ~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 465 (541)
.+++. ...| +..++..+...+...|++++|...++++++.+|+++..+..+..+....
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 99988 4445 6788999999999999999999999999999999999888888776544
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=7.8e-20 Score=172.42 Aligned_cols=285 Identities=9% Similarity=-0.013 Sum_probs=236.9
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHH
Q 048358 212 TTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALI 291 (541)
Q Consensus 212 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 291 (541)
.++..+..++..+...|++++|.++|+++.... +.+...+..++..+...|+++.|...+..+.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 455677777888888888888888888887764 3445556667777788888888888888888764 34567788889
Q ss_pred HHHHhcC-CHHHHHHHHHccCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHH
Q 048358 292 EMYIKCG-CINQASQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWN 367 (541)
Q Consensus 292 ~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 367 (541)
..+...| ++++|...|+++.+ .+...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 89999999988744 356788899999999999999999999998865 455677788889999999999
Q ss_pred HHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CC----------CCCHHHHHHHHHHHhhcCCHHH
Q 048358 368 EGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PM----------KPDAKIWGSLLSSCRTYSNLEI 436 (541)
Q Consensus 368 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----------~p~~~~~~~l~~~~~~~~~~~~ 436 (541)
+|...++.+.+. .+.+...+..+...+...|++++|...+++. .. .....++..+...+...|++++
T Consensus 177 ~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 999999999874 3566788899999999999999999998876 11 2345788899999999999999
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHH
Q 048358 437 AVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFW 516 (541)
Q Consensus 437 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 516 (541)
|+..++++++..|.++.++..++.+|.+.|++++|.+.++++.+ .+|++..++.
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--------------------------~~p~~~~~~~ 308 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG--------------------------LRRDDTFSVT 308 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--------------------------TCSCCHHHHH
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc--------------------------cCCCchHHHH
Confidence 99999999999999999999999999999999999999998754 5788899999
Q ss_pred HHHHHHHHHhc
Q 048358 517 LLELLALHQDR 527 (541)
Q Consensus 517 ~l~~~~~~~~~ 527 (541)
.++..+.....
T Consensus 309 ~l~~~~~~~~g 319 (330)
T 3hym_B 309 MLGHCIEMYIG 319 (330)
T ss_dssp HHHHHHHTTTT
T ss_pred HHHHHHHHHhC
Confidence 99998854433
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.85 E-value=5.1e-20 Score=176.67 Aligned_cols=296 Identities=14% Similarity=0.057 Sum_probs=198.7
Q ss_pred hcCCHHHHHH-HHhcCCC---C----CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChH
Q 048358 195 RLGQMKKARM-LFDKMPY---T----TIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLE 266 (541)
Q Consensus 195 ~~~~~~~A~~-~~~~~~~---~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 266 (541)
-.|++++|.+ .|++... . +...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3466666766 6664431 1 23456666677777777777777777776553 233344444444445555555
Q ss_pred HHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 048358 267 LGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKV 346 (541)
Q Consensus 267 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 346 (541)
.|...++.+.+.. + .+..++..+...|...|++++|...++++....
T Consensus 116 ~A~~~~~~al~~~-~-------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 162 (368)
T 1fch_A 116 LAISALRRCLELK-P-------------------------------DNQTALMALAVSFTNESLQRQACEILRDWLRYT- 162 (368)
T ss_dssp HHHHHHHHHHHHC-T-------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-
T ss_pred HHHHHHHHHHhcC-C-------------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 5555554444433 1 234455555555555555666666655555543
Q ss_pred CCCHHHHHH---------------HHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 048358 347 PPNDITFIG---------------LLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEE 411 (541)
Q Consensus 347 ~p~~~~~~~---------------l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 411 (541)
+.+...+.. .+..+...|++++|...|+.+.+.....++..++..+...|.+.|++++|...|++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 242 (368)
T 1fch_A 163 PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA 242 (368)
T ss_dssp TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 112211110 23333378999999999999987542222578899999999999999999999998
Q ss_pred C-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCce
Q 048358 412 M-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGC 489 (541)
Q Consensus 412 ~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 489 (541)
+ ...| +..++..+...+...|++++|+..++++++..|.++.++..++.+|.+.|++++|...++++........ +.
T Consensus 243 al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~ 321 (368)
T 1fch_A 243 ALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSR-GP 321 (368)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC----
T ss_pred HHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCC-Cc
Confidence 7 4445 5788999999999999999999999999999999999999999999999999999999999876432110 00
Q ss_pred eEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCcccccccC
Q 048358 490 SLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMYEDI 539 (541)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~i 539 (541)
..+.+|....++..|+.+|..+|+.++|.....+++
T Consensus 322 --------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 322 --------------RGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp -----------------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred --------------cccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 012467789999999999999999999988877654
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-18 Score=164.35 Aligned_cols=290 Identities=11% Similarity=0.029 Sum_probs=206.4
Q ss_pred CCchhhHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcC
Q 048358 149 KSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIG 228 (541)
Q Consensus 149 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g 228 (541)
+.+...+..+...+...|++++|.++|+++.+. .+.+...+..++.++...|
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~----------------------------~p~~~~~~~~~~~~~~~~~ 70 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEK----------------------------DPFHASCLPVHIGTLVELN 70 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------CTTCTTTHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----------------------------CCCChhhHHHHHHHHHHhh
Confidence 344455555666666666666666666554321 1223344555556666666
Q ss_pred ChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccC-ChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHH
Q 048358 229 SYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLG-SLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLF 307 (541)
Q Consensus 229 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 307 (541)
++++|...++++.+.. +.+...+..+...+...| +++.|...++.+.+.. +.+...+..+...|...|++++|...|
T Consensus 71 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 148 (330)
T 3hym_B 71 KANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAY 148 (330)
T ss_dssp CHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHH
Confidence 6666666666666542 334455556666666666 6666666666666543 234556777778888888888888888
Q ss_pred HccCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcC---
Q 048358 308 DQMVE---RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHH--- 381 (541)
Q Consensus 308 ~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--- 381 (541)
+++.+ .+...+..+...|...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+...
T Consensus 149 ~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 227 (330)
T 3hym_B 149 FTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIG 227 (330)
T ss_dssp HHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcc
Confidence 77633 345667778888888899999999998888875 56677888888888899999999999888876321
Q ss_pred ----CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchH
Q 048358 382 ----IEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNY 455 (541)
Q Consensus 382 ----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 455 (541)
.+.....+..+...|...|++++|.+.+++. ...| +...+..+...+...|++++|...++++++..|+++..+
T Consensus 228 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 307 (330)
T 3hym_B 228 NEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSV 307 (330)
T ss_dssp CSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHH
Confidence 1344567889999999999999999999887 3334 567888899999999999999999999999999999999
Q ss_pred HHHHHHHH-hcCCHH
Q 048358 456 VLLSNIYA-KHGRWE 469 (541)
Q Consensus 456 ~~l~~~~~-~~g~~~ 469 (541)
..++.++. ..|+.+
T Consensus 308 ~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 308 TMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHhCchh
Confidence 99999884 556543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-17 Score=165.40 Aligned_cols=365 Identities=10% Similarity=-0.030 Sum_probs=255.5
Q ss_pred CcchHHHHHHHHHc----CCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhc----cCCchHHHHHHHHHHHhC
Q 048358 76 NVFLYNAMIRAYTN----NHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAG----LLCPSLGKQIHAHVCKFG 147 (541)
Q Consensus 76 ~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g 147 (541)
++..+..+...|.. .+++++|+..|+...+.| +...+..+...+.. .++++.|...++...+.|
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~ 109 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG--------YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG 109 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 33444444444444 455555555555555432 23344445555554 555566666665555543
Q ss_pred CCCchhhHHHHHHHHHc----CCChHHHHHHHhhcCC-CChhhHHHHHHHHHh----cCCHHHHHHHHhcCC-CCCcchH
Q 048358 148 LKSHSITENALLDLYGK----CDELIEAHKVFEEMTD-RDIVAWNNLISGYAR----LGQMKKARMLFDKMP-YTTIVSW 217 (541)
Q Consensus 148 ~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~-~~~~~~~ 217 (541)
+...+..|...|.. .+++++|.+.|++..+ .+..++..+...|.. .+++++|.+.|++.. ..++.++
T Consensus 110 ---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~ 186 (490)
T 2xm6_A 110 ---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSC 186 (490)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 33444445555555 5566666666655443 234455555555554 556666666666543 2356677
Q ss_pred HHHHHHHHh----cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHc----cCChHHHHHHHHHHHHhCCCccHhHHHH
Q 048358 218 TAMISGYTH----IGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQ----LGSLELGEWIHMYCDKNHLLRRTVICNA 289 (541)
Q Consensus 218 ~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 289 (541)
..+...|.. .+++++|..+|++..+.| +...+..+...+.. .++.++|...++...+.+ +...+..
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 260 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFR 260 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 777777877 788888888888888764 44566666666664 778889998888887765 4556777
Q ss_pred HHHHHHh----cCCHHHHHHHHHccCC-CChhHHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048358 290 LIEMYIK----CGCINQASQLFDQMVE-RDVVSWSTVIGGLANH-----GKAHKAIHLFHEMQRLKVPPNDITFIGLLSA 359 (541)
Q Consensus 290 l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 359 (541)
+...|.. .++.++|...|+...+ .++..+..+...|... +++++|..+|++..+.| +...+..+...
T Consensus 261 lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 337 (490)
T 2xm6_A 261 LGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAI 337 (490)
T ss_dssp HHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHH
Confidence 8888887 8899999999998855 4677888888888887 89999999999999876 44566777777
Q ss_pred HhccC---cHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhh--
Q 048358 360 CAHTG---FWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGR----AGRLDQALNIIEEMPMKPDAKIWGSLLSSCRT-- 430 (541)
Q Consensus 360 ~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~-- 430 (541)
|...| ++++|++.|++..+. .+...+..+...|.. .+++++|.++|++.-...+...+..+...|..
T Consensus 338 y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~ 413 (490)
T 2xm6_A 338 YFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGL 413 (490)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred HHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCC
Confidence 77656 889999999999874 466778889999988 89999999999988323467788888888887
Q ss_pred --cCCHHHHHHHHHHHhccCCC---CcchHHHHHHHHHh
Q 048358 431 --YSNLEIAVIAMEHLLVLEPE---DTGNYVLLSNIYAK 464 (541)
Q Consensus 431 --~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 464 (541)
.+++++|...|+++.+.+|+ ++.....++.++..
T Consensus 414 g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 414 GVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 89999999999999998844 67777777766554
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.84 E-value=8e-17 Score=168.23 Aligned_cols=396 Identities=14% Similarity=0.112 Sum_probs=305.5
Q ss_pred CcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhH
Q 048358 76 NVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITE 155 (541)
Q Consensus 76 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 155 (541)
++.--...+.+|...|.+.+|++++++....+- ...-+...-+.++.+..+. +..+..+....... ...
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s---~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~ 1052 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNS---VFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDA 1052 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCC---cccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccH
Confidence 444445678899999999999999999984320 0013345556677666666 55555555544432 123
Q ss_pred HHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHH
Q 048358 156 NALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALD 235 (541)
Q Consensus 156 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 235 (541)
..+...+...|.+++|..+|++... .....+.++ ...+++++|.++.++.. ++.+|..+..++...|++++|++
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~~-~~~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAId 1126 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFDV-NTSAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAID 1126 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCC-HHHHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHH
Confidence 4478889999999999999999752 222223333 27789999999999874 46789999999999999999999
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCCCh
Q 048358 236 VFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERDV 315 (541)
Q Consensus 236 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 315 (541)
.|.+. -|...|..++.+|.+.|+++++.+++....+.. +++...+.++.+|++.+++++...+. ..++.
T Consensus 1127 sYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ 1195 (1630)
T 1xi4_A 1127 SYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNN 1195 (1630)
T ss_pred HHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCH
Confidence 99764 567788899999999999999999999888765 33333445999999999999755553 45567
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHH
Q 048358 316 VSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDL 395 (541)
Q Consensus 316 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 395 (541)
..|..+...|...|++++|..+|... ..|..++.++.+.|+++.|.+.+++.. +..+|..+..+
T Consensus 1196 ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~a 1259 (1630)
T 1xi4_A 1196 AHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFA 1259 (1630)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHH
Confidence 77888999999999999999999984 479999999999999999999999773 45889999999
Q ss_pred HHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhc--CCHHHHHH
Q 048358 396 LGRAGRLDQALNIIEEMPMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKH--GRWEDVSR 473 (541)
Q Consensus 396 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~ 473 (541)
|...|++..|......+. .+...+..++..|.+.|.+++|+.+++..+.+++.+...|..|+.+|.+- ++..++.+
T Consensus 1260 cve~~Ef~LA~~cgl~Ii--v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk 1337 (1630)
T 1xi4_A 1260 CVDGKEFRLAQMCGLHIV--VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLE 1337 (1630)
T ss_pred HhhhhHHHHHHHHHHhhh--cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999999877543 45666678999999999999999999999999999999999999988875 45555665
Q ss_pred HHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCccccccc
Q 048358 474 MRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMYED 538 (541)
Q Consensus 474 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 538 (541)
+|..-. ++++.. ...+....|..+.-+|.+-++.+.|+..|.+.
T Consensus 1338 ~f~~ri--ni~k~~-------------------r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h 1381 (1630)
T 1xi4_A 1338 LFWSRV--NIPKVL-------------------RAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 1381 (1630)
T ss_pred HHHHhc--ccchHh-------------------HHHHHHHHHHHHHHHHHhcccHHHHHHHHHhc
Confidence 554321 111100 01255677888999999999999888666543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.84 E-value=3.1e-19 Score=171.13 Aligned_cols=297 Identities=11% Similarity=0.024 Sum_probs=225.7
Q ss_pred HHHcCCChHHHHH-HHhhcCC--C-----ChhhHHHHHHHHHhcCCHHHHHHHHhcCC---CCCcchHHHHHHHHHhcCC
Q 048358 161 LYGKCDELIEAHK-VFEEMTD--R-----DIVAWNNLISGYARLGQMKKARMLFDKMP---YTTIVSWTAMISGYTHIGS 229 (541)
Q Consensus 161 ~~~~~g~~~~A~~-~~~~~~~--~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~ 229 (541)
++...|++++|.. .|++... | +...+..+...+.+.|++++|...|+++. +.+..+|..+..++...|+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 3445689999998 8887654 1 35678899999999999999999999875 3466789999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHc
Q 048358 230 YAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQ 309 (541)
Q Consensus 230 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 309 (541)
+++|+..|+++.+.. +.+..++..+...+...|+++.|...+..+.+..... ...+..+... ..
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~-------~~------- 177 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAY-AHLVTPAEEG-------AG------- 177 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT-GGGCC---------------------
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHH-------hh-------
Confidence 999999999999875 5577888888999999999999999999988865332 2222111100 00
Q ss_pred cCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHh
Q 048358 310 MVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPP--NDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIE 387 (541)
Q Consensus 310 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 387 (541)
...+ ...+..+...+ ..|++++|...|+++.+.. +. +..++..+...+...|++++|+..|+++.... +.+..
T Consensus 178 ~~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~ 252 (368)
T 1fch_A 178 GAGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYL 252 (368)
T ss_dssp ---------CTTHHHH-HHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHH
T ss_pred hhcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHH
Confidence 0000 01111222333 7889999999999998864 33 57888899999999999999999999998753 55678
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC-----------cch
Q 048358 388 HYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPED-----------TGN 454 (541)
Q Consensus 388 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~ 454 (541)
.|..+...+...|++++|...|+++ ...| +..++..+..++.+.|++++|...++++++..|.+ ..+
T Consensus 253 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 332 (368)
T 1fch_A 253 LWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENI 332 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHH
Confidence 8999999999999999999999987 4445 57889999999999999999999999999988877 789
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHh
Q 048358 455 YVLLSNIYAKHGRWEDVSRMRKLI 478 (541)
Q Consensus 455 ~~~l~~~~~~~g~~~~A~~~~~~m 478 (541)
|..++.+|...|++++|..++++.
T Consensus 333 ~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 333 WSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHHHHHHHhCChHhHHHhHHHH
Confidence 999999999999999999887743
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.7e-19 Score=167.97 Aligned_cols=288 Identities=15% Similarity=0.122 Sum_probs=102.8
Q ss_pred cCCChHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHH
Q 048358 58 SGGDLAYASLLFKQVKEPNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGK 137 (541)
Q Consensus 58 ~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 137 (541)
+.|++++|.++++++..| .+|..++.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfik-----------a~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK-----------ADDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHc-----------CCCHHHHHHHHHHHHhCCCHHHHH
Confidence 568899999999999655 4999999999999999999999964 467779999999999999999999
Q ss_pred HHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchH
Q 048358 138 QIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSW 217 (541)
Q Consensus 138 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 217 (541)
..++...+. .+++.+.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|.+++|...|..+ ..|
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~ 151 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNF 151 (449)
T ss_dssp -----------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCH
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhH
Confidence 988877764 44577888999999999999998887753 67779999999999999999999999877 478
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhc
Q 048358 218 TAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKC 297 (541)
Q Consensus 218 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 297 (541)
..++.++.+.|++++|.+.++++ .+..+|..++.+|...|+++.|...... +..++.-...
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~-------- 212 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEE-------- 212 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHH--------
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHH--------
Confidence 88999999999999999888887 2566666677777766666666433222 1112222223
Q ss_pred CCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhh
Q 048358 298 GCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMK 377 (541)
Q Consensus 298 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 377 (541)
++..|.+.|++++|..+++...... +-....|+.+..+|++- ++++..+.++...
T Consensus 213 -----------------------lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~ 267 (449)
T 1b89_A 213 -----------------------LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFW 267 (449)
T ss_dssp -----------------------HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHS
T ss_pred -----------------------HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHH
Confidence 4444555555555555555544433 33333444444444332 2222222222222
Q ss_pred hhcCCCC------cHhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 048358 378 RDHHIEH------KIEHYGCLVDLLGRAGRLDQALNIIEEM 412 (541)
Q Consensus 378 ~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 412 (541)
++-.++| +...|..++..|...++++.|....-+-
T Consensus 268 ~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 268 SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 2222333 3445666666666667776666544443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.83 E-value=3.2e-17 Score=165.11 Aligned_cols=409 Identities=9% Similarity=0.049 Sum_probs=286.3
Q ss_pred CCchhHHHHHHHHHHcCCChHHHHHHHhcCCC--C-CcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCccc
Q 048358 43 SQSNFLVTKMIDVCNSGGDLAYASLLFKQVKE--P-NVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFT 119 (541)
Q Consensus 43 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~ 119 (541)
+-+...|..++. +.+.|+++.|..+|+++.+ | +...|...+..+.+.|++++|..+|+++... .|+...
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~-------~p~~~l 81 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK-------VLHIDL 81 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT-------CCCHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCChHH
Confidence 447778888888 4778999999999999876 4 4567999999999999999999999999986 567777
Q ss_pred HHHHHHHH-hccCCchHHHH----HHHHHHHh-CCCC-chhhHHHHHHHHHc---------CCChHHHHHHHhhcCC-CC
Q 048358 120 LPFVIKSC-AGLLCPSLGKQ----IHAHVCKF-GLKS-HSITENALLDLYGK---------CDELIEAHKVFEEMTD-RD 182 (541)
Q Consensus 120 ~~~ll~~~-~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~-~~ 182 (541)
|...+... ...|+.+.|.+ +|+..+.. |..| +...|...+....+ .|+++.|..+|++..+ |.
T Consensus 82 w~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~ 161 (530)
T 2ooe_A 82 WKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPM 161 (530)
T ss_dssp HHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchh
Confidence 77776533 35677777665 67766654 5443 45677777766654 6788889999988775 32
Q ss_pred h---hhHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHH------HHCC---CCCCh-
Q 048358 183 I---VAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQM------QMVG---IEPDE- 249 (541)
Q Consensus 183 ~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m------~~~~---~~p~~- 249 (541)
. ..|..........| ...+..++. ...+++..|..++.+. .+.. ++|+.
T Consensus 162 ~~~~~~~~~~~~~e~~~~-~~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~ 223 (530)
T 2ooe_A 162 INIEQLWRDYNKYEEGIN-IHLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNT 223 (530)
T ss_dssp TTHHHHHHHHHHHHHHHC-HHHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--
T ss_pred hhHHHHHHHHHHHHHhhc-hhHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCC
Confidence 1 12222211100001 011111111 1234456666655542 1111 23431
Q ss_pred -------HHHHHHHHHHHc----cCCh----HHHHHHHHHHHHhCCCccHhHHHHHHHHHHh-------cCCHH------
Q 048358 250 -------ISIVSVLPACAQ----LGSL----ELGEWIHMYCDKNHLLRRTVICNALIEMYIK-------CGCIN------ 301 (541)
Q Consensus 250 -------~~~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~------ 301 (541)
..|...+..... .++. +.+..+|+.+.... +.+...|..++..+.+ .|+++
T Consensus 224 ~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~ 302 (530)
T 2ooe_A 224 PQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFS 302 (530)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhh
Confidence 344444332222 1233 36677888887763 4567788888888876 68877
Q ss_pred -HHHHHHHccCC---C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-H-HHHHHHHHHHhccCcHHHHHHHHH
Q 048358 302 -QASQLFDQMVE---R-DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPN-D-ITFIGLLSACAHTGFWNEGLMYFD 374 (541)
Q Consensus 302 -~A~~~~~~~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~-~~~~~l~~~~~~~g~~~~a~~~~~ 374 (541)
+|..+|++..+ | +...|..++..+...|++++|..+|+++.+. +|+ . ..|..++..+.+.|++++|.++|+
T Consensus 303 ~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 380 (530)
T 2ooe_A 303 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFK 380 (530)
T ss_dssp HHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 89999998864 3 5678888999999999999999999999985 454 2 478888888888999999999999
Q ss_pred HhhhhcCCCCcHhHHHHHHHH-HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC
Q 048358 375 SMKRDHHIEHKIEHYGCLVDL-LGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPED 451 (541)
Q Consensus 375 ~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (541)
+..+.. +.+...|...+.. +...|++++|..+|++. ...| +...|..++..+.+.|+.++|..+|+++++..|.+
T Consensus 381 ~Al~~~--~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~ 458 (530)
T 2ooe_A 381 KAREDA--RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 458 (530)
T ss_dssp HHHTCT--TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSC
T ss_pred HHHhcc--CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCC
Confidence 998742 2233333332222 34689999999999987 4445 57888899999999999999999999999887766
Q ss_pred cc----hHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 048358 452 TG----NYVLLSNIYAKHGRWEDVSRMRKLIRSKS 482 (541)
Q Consensus 452 ~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 482 (541)
+. .|...+......|+.+.+..+.+++.+.-
T Consensus 459 ~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 459 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp GGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 55 78888888888999999999998886543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-16 Score=166.96 Aligned_cols=411 Identities=11% Similarity=0.086 Sum_probs=312.5
Q ss_pred CChhhHHHHHHhccChhHHHHHHHHHHHhcc--CCchhHHHHHHHHHHcCCChHHHHHHHhcCCC-CC-----cchHHHH
Q 048358 12 ELEDRFVPILQSCENLIELKKIHTQILKYLL--SQSNFLVTKMIDVCNSGGDLAYASLLFKQVKE-PN-----VFLYNAM 83 (541)
Q Consensus 12 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~-----~~~~~~l 83 (541)
-|...+..+|......+ +++.++.....+ ..++.-....++.|...|.+.+|+++++++.- ++ ....+.+
T Consensus 951 ~d~~lW~~vl~~~n~~R--R~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlL 1028 (1630)
T 1xi4_A 951 KDPELWGSVLLESNPYR--RPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLL 1028 (1630)
T ss_pred cCHHHHHHHhcCCcHHH--HHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHH
Confidence 35556666665443222 344444443332 34566667888999999999999999999873 32 2456667
Q ss_pred HHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHH
Q 048358 84 IRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYG 163 (541)
Q Consensus 84 l~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 163 (541)
+....+. +..+..+..++.-. ....-+...+...|.+++|..+|++.. ......+.++ -
T Consensus 1029 i~tAIka-D~~Rv~eyI~kLd~------------~d~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLi---e 1087 (1630)
T 1xi4_A 1029 ILTAIKA-DRTRVMEYINRLDN------------YDAPDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLI---E 1087 (1630)
T ss_pred HHHHHHh-ChhhHHHHHHHhhh------------ccHHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHH---H
Confidence 7766666 55666666555432 124457888999999999999998862 1222223332 2
Q ss_pred cCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048358 164 KCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMV 243 (541)
Q Consensus 164 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 243 (541)
..|++++|.++.++.. +..+|..+..++...|++++|.+.|.+. .|...|..++.++.+.|++++|.++|....+.
T Consensus 1088 ~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~ 1163 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 1163 (1630)
T ss_pred HHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7789999999999874 4678889999999999999999999775 67788999999999999999999999988776
Q ss_pred CCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHH
Q 048358 244 GIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIG 323 (541)
Q Consensus 244 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~ 323 (541)
. ++....+.+..+|++.++++....+.. .++...|..+...|...|++++|..+|..+ ..|..+..
T Consensus 1164 ~--~e~~Idt~LafaYAKl~rleele~fI~-------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~ 1229 (1630)
T 1xi4_A 1164 A--RESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLAS 1229 (1630)
T ss_pred c--ccccccHHHHHHHHhhcCHHHHHHHHh-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHH
Confidence 4 443334458889999999886555532 345667778999999999999999999985 58999999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHH
Q 048358 324 GLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLD 403 (541)
Q Consensus 324 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 403 (541)
+|.+.|++++|.+.+++. .+..+|..+..+|...|++..|......+. .+...+..++..|.+.|.++
T Consensus 1230 tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~Ii------v~~deLeeli~yYe~~G~fe 1297 (1630)
T 1xi4_A 1230 TLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV------VHADELEELINYYQDRGYFE 1297 (1630)
T ss_pred HHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh------cCHHHHHHHHHHHHHcCCHH
Confidence 999999999999999876 356899999999999999999988776532 35566789999999999999
Q ss_pred HHHHHHHhC-CCCCC-HHHHHHHHHHHh--hcCCHHHHHHHHHHHhccCC-----CCcchHHHHHHHHHhcCCHHHHHHH
Q 048358 404 QALNIIEEM-PMKPD-AKIWGSLLSSCR--TYSNLEIAVIAMEHLLVLEP-----EDTGNYVLLSNIYAKHGRWEDVSRM 474 (541)
Q Consensus 404 ~A~~~~~~~-~~~p~-~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~ 474 (541)
+|+.+++.. +..|. ...|..+...+. +-++..++.+.|..-..+.| .+...|.-++..|.+.|+|+.|...
T Consensus 1298 EAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1298 ELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 999999877 66653 355655555554 44566777777776666555 5778899999999999999999854
Q ss_pred H
Q 048358 475 R 475 (541)
Q Consensus 475 ~ 475 (541)
+
T Consensus 1378 m 1378 (1630)
T 1xi4_A 1378 M 1378 (1630)
T ss_pred H
Confidence 3
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.1e-16 Score=157.52 Aligned_cols=362 Identities=12% Similarity=-0.006 Sum_probs=302.7
Q ss_pred HHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhc----cCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHc----CCC
Q 048358 96 AINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAG----LLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGK----CDE 167 (541)
Q Consensus 96 A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~g~ 167 (541)
++..++...+ ..+...+..+...+.. .++++.|...++...+.| +...+..|...|.. .++
T Consensus 26 ~~~~~~~~a~--------~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~ 94 (490)
T 2xm6_A 26 NLEQLKQKAE--------SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQD 94 (490)
T ss_dssp CHHHHHHHHH--------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred HHHHHHHHHH--------CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCC
Confidence 3555555554 3466777777777777 899999999999999875 56778888899998 899
Q ss_pred hHHHHHHHhhcCC-CChhhHHHHHHHHHh----cCCHHHHHHHHhcCCC-CCcchHHHHHHHHHh----cCChHHHHHHH
Q 048358 168 LIEAHKVFEEMTD-RDIVAWNNLISGYAR----LGQMKKARMLFDKMPY-TTIVSWTAMISGYTH----IGSYAEALDVF 237 (541)
Q Consensus 168 ~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~ 237 (541)
+++|.+.|++..+ .+...+..+...|.. .+++++|.+.|++... .++.++..+...|.. .+++++|++.|
T Consensus 95 ~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 174 (490)
T 2xm6_A 95 YAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWY 174 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 9999999998765 466788888888888 8899999999998754 466788888888887 88999999999
Q ss_pred HHHHHCCCCCChHHHHHHHHHHHc----cCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHh----cCCHHHHHHHHHc
Q 048358 238 RQMQMVGIEPDEISIVSVLPACAQ----LGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIK----CGCINQASQLFDQ 309 (541)
Q Consensus 238 ~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 309 (541)
++..+.| +...+..+...+.. .++.++|...++...+.+ +...+..+...|.. .+++++|...|++
T Consensus 175 ~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~ 248 (490)
T 2xm6_A 175 SKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQ 248 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 9998875 56777777777777 899999999999998876 46678888888887 8899999999998
Q ss_pred cCC-CChhHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc-----CcHHHHHHHHHHhhhh
Q 048358 310 MVE-RDVVSWSTVIGGLAN----HGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHT-----GFWNEGLMYFDSMKRD 379 (541)
Q Consensus 310 ~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~ 379 (541)
..+ .++..+..+...|.. .+++++|..+|++..+.| +...+..+...|... +++++|...|++..+.
T Consensus 249 a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~ 325 (490)
T 2xm6_A 249 SAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ 325 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc
Confidence 855 467788888888888 899999999999998875 455677777777776 8999999999999874
Q ss_pred cCCCCcHhHHHHHHHHHHhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHhccCCCCc
Q 048358 380 HHIEHKIEHYGCLVDLLGRAG---RLDQALNIIEEMPMKPDAKIWGSLLSSCRT----YSNLEIAVIAMEHLLVLEPEDT 452 (541)
Q Consensus 380 ~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 452 (541)
.+...+..+...|...| ++++|+++|++.-...+...+..+...|.. .+++++|...|+++.+.+ ++
T Consensus 326 ----~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~ 399 (490)
T 2xm6_A 326 ----GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LS 399 (490)
T ss_dssp ----TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CH
T ss_pred ----CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CH
Confidence 34566788888888767 889999999988323678888889998888 899999999999998864 57
Q ss_pred chHHHHHHHHHh----cCCHHHHHHHHHHhhhCCC
Q 048358 453 GNYVLLSNIYAK----HGRWEDVSRMRKLIRSKSM 483 (541)
Q Consensus 453 ~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 483 (541)
.++..|+.+|.+ .+++++|...+++..+.+.
T Consensus 400 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 400 AAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 899999999999 8999999999999988763
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.8e-17 Score=152.54 Aligned_cols=267 Identities=10% Similarity=0.016 Sum_probs=192.9
Q ss_pred hcCCHHHHHHHHhcCCCCCc----chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHH
Q 048358 195 RLGQMKKARMLFDKMPYTTI----VSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEW 270 (541)
Q Consensus 195 ~~~~~~~A~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 270 (541)
..|++..|+..++.....++ .....+.++|...|+++.|+..++.. -+|+..++..+...+...++.+.|.+
T Consensus 11 ~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A~~ 86 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAIVA 86 (291)
T ss_dssp HTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHHHH
Confidence 34555555555544433222 23334455666666666666544331 24455555556666666666666666
Q ss_pred HHHHHHHhCC-CccHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 048358 271 IHMYCDKNHL-LRRTVICNALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPN 349 (541)
Q Consensus 271 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 349 (541)
.++.+...+. +.+...+..+..+|...|++++|.+.+++ ..+...+..++..+.+.|++++|...|+++.+.. |+
T Consensus 87 ~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~ 162 (291)
T 3mkr_A 87 ELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--ED 162 (291)
T ss_dssp HHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cC
Confidence 6666655543 33566777788999999999999999998 5678889999999999999999999999998864 55
Q ss_pred HHHH---HHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 048358 350 DITF---IGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSL 424 (541)
Q Consensus 350 ~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 424 (541)
.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.|++. ...| +..++..+
T Consensus 163 ~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l 240 (291)
T 3mkr_A 163 ATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINL 240 (291)
T ss_dssp CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 4321 12334445669999999999999985 4678889999999999999999999999997 5556 67889999
Q ss_pred HHHHhhcCCHHH-HHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 048358 425 LSSCRTYSNLEI-AVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMR 475 (541)
Q Consensus 425 ~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 475 (541)
+..+...|+.++ +.++++++++.+|+++.+ .+...+.+.++++..-|
T Consensus 241 ~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 241 VVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHHHc
Confidence 999999999875 678999999999998754 34566666777766544
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.82 E-value=9.1e-17 Score=161.80 Aligned_cols=373 Identities=8% Similarity=0.021 Sum_probs=245.9
Q ss_pred CcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhH
Q 048358 76 NVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITE 155 (541)
Q Consensus 76 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 155 (541)
+...|..++. +.+.|++++|..+|+++.+.. |.+...|...+..+.+.|+++.|..+|+.++... |+...|
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~------P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw 82 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQF------PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLW 82 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHH
Confidence 5567777777 467788888888888888764 5566677888888888888888888888887754 466666
Q ss_pred HHHHHH-HHcCCChHHHHH----HHhhcCC------CChhhHHHHHHHHHh---------cCCHHHHHHHHhcCCC-CCc
Q 048358 156 NALLDL-YGKCDELIEAHK----VFEEMTD------RDIVAWNNLISGYAR---------LGQMKKARMLFDKMPY-TTI 214 (541)
Q Consensus 156 ~~l~~~-~~~~g~~~~A~~----~~~~~~~------~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~-~~~ 214 (541)
..++.. ....|+.++|.+ +|+.... ++...|...+....+ .|+++.|..+|++... |..
T Consensus 83 ~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~ 162 (530)
T 2ooe_A 83 KCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMI 162 (530)
T ss_dssp HHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCT
T ss_pred HHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhh
Confidence 655542 234566665554 4443311 233445444444332 3445555555544432 110
Q ss_pred ---chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHH------HhC---CCc
Q 048358 215 ---VSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCD------KNH---LLR 282 (541)
Q Consensus 215 ---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~------~~~---~~~ 282 (541)
..|..........|. .+...++. ...+++..|..++.... +.. ++|
T Consensus 163 ~~~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p 220 (530)
T 2ooe_A 163 NIEQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPP 220 (530)
T ss_dssp THHHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred hHHHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence 011111110000000 00000000 13345667776666532 111 233
Q ss_pred c--------HhHHHHHHHHHHhc----CCH----HHHHHHHHccCC---CChhHHHHHHHHHHh-------cCChH----
Q 048358 283 R--------TVICNALIEMYIKC----GCI----NQASQLFDQMVE---RDVVSWSTVIGGLAN-------HGKAH---- 332 (541)
Q Consensus 283 ~--------~~~~~~l~~~~~~~----g~~----~~A~~~~~~~~~---~~~~~~~~l~~~~~~-------~~~~~---- 332 (541)
+ ...|...+...... ++. +.+..+|++... .++..|..++..+.. .|+++
T Consensus 221 ~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~ 300 (530)
T 2ooe_A 221 QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKL 300 (530)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhh
Confidence 3 24666665444332 232 467778887744 367788888888775 79987
Q ss_pred ---HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCc-H-hHHHHHHHHHHhcCCHHHHHH
Q 048358 333 ---KAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHK-I-EHYGCLVDLLGRAGRLDQALN 407 (541)
Q Consensus 333 ---~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~g~~~~A~~ 407 (541)
+|..+|++..+.-.+.+...+..++..+.+.|++++|..+|+++.+. +|+ . ..|..++..+.+.|++++|.+
T Consensus 301 ~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~ 377 (530)
T 2ooe_A 301 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRM 377 (530)
T ss_dssp HHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS---SSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc---cccCchHHHHHHHHHHHHhcCHHHHHH
Confidence 89999999987323556788889999999999999999999999974 343 3 579999999999999999999
Q ss_pred HHHhC-CCCCC-HHHHHHHHHH-HhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 048358 408 IIEEM-PMKPD-AKIWGSLLSS-CRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKS 482 (541)
Q Consensus 408 ~~~~~-~~~p~-~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 482 (541)
+|++. ...|+ ...|...... +...|+.++|..+|+++++..|+++..|..++..+.+.|+.++|..++++....+
T Consensus 378 ~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 378 IFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 99998 44443 3333333222 3468999999999999999999999999999999999999999999999998874
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=8.5e-19 Score=167.96 Aligned_cols=260 Identities=11% Similarity=0.000 Sum_probs=209.9
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHH
Q 048358 213 TIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIE 292 (541)
Q Consensus 213 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 292 (541)
+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|+++.|...++.+.+.. +.+..++..++.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 44567788888888888888888888888764 4466778888888888888888888888888765 345778888888
Q ss_pred HHHhcCCHHHHHHHHHccCCCC-------------hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHH
Q 048358 293 MYIKCGCINQASQLFDQMVERD-------------VVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPP--NDITFIGLL 357 (541)
Q Consensus 293 ~~~~~g~~~~A~~~~~~~~~~~-------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~l~ 357 (541)
+|...|++++|...|+++.+.+ ...+..+...+...|++++|..+|+++.+.. +. +..++..+.
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHH
Confidence 8999999999999888874421 2233445788899999999999999998875 33 688899999
Q ss_pred HHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHH
Q 048358 358 SACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLE 435 (541)
Q Consensus 358 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~ 435 (541)
..+...|++++|+..|+++.+.. +.+..+|..+..+|...|++++|+..|+++ ...| +..++..+..+|...|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVR--PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 99999999999999999998853 567888999999999999999999999988 4455 5788999999999999999
Q ss_pred HHHHHHHHHhccCCC------------CcchHHHHHHHHHhcCCHHHHHHHHHH
Q 048358 436 IAVIAMEHLLVLEPE------------DTGNYVLLSNIYAKHGRWEDVSRMRKL 477 (541)
Q Consensus 436 ~a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 477 (541)
+|...++++++..|. +...|..++.++...|+.+.|..+.++
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999988766 367899999999999999999887765
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=3e-19 Score=171.16 Aligned_cols=274 Identities=11% Similarity=0.014 Sum_probs=218.3
Q ss_pred ChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHH
Q 048358 248 DEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE---RDVVSWSTVIGG 324 (541)
Q Consensus 248 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~ 324 (541)
+...+..+...+.+.|+++.|...++.+.+.. +.+..++..++.+|...|++++|...|+++.+ .+..+|..+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 44557888889999999999999999999876 45688999999999999999999999998843 467899999999
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCC-H----------HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHH
Q 048358 325 LANHGKAHKAIHLFHEMQRLKVPPN-D----------ITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLV 393 (541)
Q Consensus 325 ~~~~~~~~~a~~~~~~m~~~~~~p~-~----------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 393 (541)
|...|++++|...|+++.+.. |+ . ..+..+...+...|++++|...|+++.+.....++..++..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 999999999999999998753 32 2 2233457889999999999999999998642222688899999
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHH
Q 048358 394 DLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDV 471 (541)
Q Consensus 394 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 471 (541)
..|...|++++|++.|+++ ...| +..+|..+..++...|++++|+..++++++..|.++.++..++.+|.+.|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999998 4444 6789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCccccccc
Q 048358 472 SRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMYED 538 (541)
Q Consensus 472 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 538 (541)
...++++.+......... ..........++..|+.++..+|+.+.+.....++
T Consensus 301 ~~~~~~al~~~~~~~~~~--------------~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQ--------------QVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHHHHHCC--------------------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHHHHhCcccCCCc--------------ccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 999999876532110000 00011124688999999999999988776655544
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-17 Score=165.55 Aligned_cols=363 Identities=9% Similarity=-0.052 Sum_probs=207.6
Q ss_pred cccHHHHHHHHhccCCchHHHHHHHHHHHh-----C---CCCchhhHHHHHHHHHcCCChHHHHHHHhhcCC--------
Q 048358 117 KFTLPFVIKSCAGLLCPSLGKQIHAHVCKF-----G---LKSHSITENALLDLYGKCDELIEAHKVFEEMTD-------- 180 (541)
Q Consensus 117 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------- 180 (541)
...|+.+...+...|+.++|.+.+++.++. + .+....+|+.+..+|...|++++|...+++..+
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 344555666666666666666666555432 0 111234566666666666666666666555421
Q ss_pred ---CChhhHHHHHHHHHhc--CCHHHHHHHHhcCC---CCCcchHHHHHHH---HHhcCChHHHHHHHHHHHHCCCCCCh
Q 048358 181 ---RDIVAWNNLISGYARL--GQMKKARMLFDKMP---YTTIVSWTAMISG---YTHIGSYAEALDVFRQMQMVGIEPDE 249 (541)
Q Consensus 181 ---~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~---~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~m~~~~~~p~~ 249 (541)
....++..+..++... +++++|.+.|++.. +.++..+..+..+ +...++.++|++.+++..+.. +.+.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~ 209 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQ 209 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccch
Confidence 1123344444344332 34667777766653 2234444444443 334566667777777766553 2334
Q ss_pred HHHHHHHHHHHc----cCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC--C-ChhHHHHHH
Q 048358 250 ISIVSVLPACAQ----LGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE--R-DVVSWSTVI 322 (541)
Q Consensus 250 ~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~ 322 (541)
..+..+...+.. .++.+.|.+.++...... +.+..++..+...|...|++++|...|.+..+ | +..++..+.
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 288 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIG 288 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 444444433332 345667777777766654 33456677777777777777777777776633 2 444555555
Q ss_pred HHHHh-------------------cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCC
Q 048358 323 GGLAN-------------------HGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIE 383 (541)
Q Consensus 323 ~~~~~-------------------~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 383 (541)
.+|.. .+.+++|...+++..+.. +.+..++..+...+...|++++|+..|++..... ..
T Consensus 289 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~-~~ 366 (472)
T 4g1t_A 289 CCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKE-LT 366 (472)
T ss_dssp HHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC-CC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC-CC
Confidence 44432 233677888888887765 5566788889999999999999999999988642 22
Q ss_pred CcH--hHHHHHHH-HHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHH
Q 048358 384 HKI--EHYGCLVD-LLGRAGRLDQALNIIEEM-PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLS 459 (541)
Q Consensus 384 ~~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 459 (541)
+.. ..+..+.. .+...|++++|+..|++. .+.|+....... ...+..++++.++.+|+++.+|..|+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG 437 (472)
T 4g1t_A 367 PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALHVLA 437 (472)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 221 12333332 245789999999999887 666765433322 34456678888889999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCccCCceeEE
Q 048358 460 NIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLI 492 (541)
Q Consensus 460 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 492 (541)
.+|...|++++|.+.|++..+.+...+.+.+|+
T Consensus 438 ~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 438 FLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHCC-----------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 999999999999999999998776555555453
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.7e-17 Score=163.40 Aligned_cols=349 Identities=9% Similarity=0.016 Sum_probs=230.6
Q ss_pred CchhhHHHHHHHHHcCCChHHHHHHHhhcCC------------CChhhHHHHHHHHHhcCCHHHHHHHHhcCC-------
Q 048358 150 SHSITENALLDLYGKCDELIEAHKVFEEMTD------------RDIVAWNNLISGYARLGQMKKARMLFDKMP------- 210 (541)
Q Consensus 150 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------- 210 (541)
.....|+.|..++...|++++|++.|++..+ ....+|+.+...|...|++++|...+++..
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 3456789999999999999999999887532 235678889999999999999988887653
Q ss_pred C----CCcchHHHHHHHHHhc--CChHHHHHHHHHHHHCCCCCCh-HHHHHHHHH---HHccCChHHHHHHHHHHHHhCC
Q 048358 211 Y----TTIVSWTAMISGYTHI--GSYAEALDVFRQMQMVGIEPDE-ISIVSVLPA---CAQLGSLELGEWIHMYCDKNHL 280 (541)
Q Consensus 211 ~----~~~~~~~~l~~~~~~~--g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~ 280 (541)
. ....++..+..++... +++++|+..|++..+. .|+. ..+..+... +...++.+.|...++.+.+..
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~- 205 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN- 205 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-
Confidence 1 1234566655555544 5689999999998876 4543 333333333 445677788888888887765
Q ss_pred CccHhHHHHHHHHHHh----cCCHHHHHHHHHccC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 048358 281 LRRTVICNALIEMYIK----CGCINQASQLFDQMV---ERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITF 353 (541)
Q Consensus 281 ~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 353 (541)
+.+..++..+...+.. .|++++|.+.+++.. ..+..++..+...|...|++++|...+++..+.. |.+..++
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 284 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLH 284 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHH
Confidence 3345556655555444 456778888888763 3466788888999999999999999999988764 4455666
Q ss_pred HHHHHHHhcc-------------------CcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 048358 354 IGLLSACAHT-------------------GFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-P 413 (541)
Q Consensus 354 ~~l~~~~~~~-------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 413 (541)
..+..+|... +.++.|...++...... +.+...+..+...|...|++++|++.|++. .
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~ 362 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN--DNLFRVCSILASLHALADQYEEAEYYFQKEFS 362 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC--TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC--CchhhhhhhHHHHHHHhccHHHHHHHHHHHHh
Confidence 6666555322 23566777777776643 445566778888888888888888888876 3
Q ss_pred CCCCHHH----HHHHHH-HHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCc
Q 048358 414 MKPDAKI----WGSLLS-SCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPG 488 (541)
Q Consensus 414 ~~p~~~~----~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 488 (541)
..|+... +..+.. .....|+.++|+..|++++++.|.+.... +..+.+.+++++..
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~----------~~~~~l~~~~~~~l--------- 423 (472)
T 4g1t_A 363 KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE----------KMKDKLQKIAKMRL--------- 423 (472)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH----------HHHHHHHHHHHHHH---------
T ss_pred cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH----------HHHHHHHHHHHHHH---------
Confidence 4444322 222222 23567888888888888888888753221 12233334444332
Q ss_pred eeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCcccccccCC
Q 048358 489 CSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMYEDIG 540 (541)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~i~ 540 (541)
+.+|+++.++..||.+|..+|+.++|++.++++++
T Consensus 424 -----------------~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe 458 (472)
T 4g1t_A 424 -----------------SKNGADSEALHVLAFLQELNEKMQQADEDSERGLE 458 (472)
T ss_dssp -----------------HHCC-CTTHHHHHHHHHHHHHHCC-----------
T ss_pred -----------------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 24799999999999999999999999999999885
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-17 Score=155.91 Aligned_cols=363 Identities=10% Similarity=0.019 Sum_probs=179.2
Q ss_pred ChhhHHHHHHhccChhHHHHHHHHHHHhccCCchhHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHcCCC
Q 048358 13 LEDRFVPILQSCENLIELKKIHTQILKYLLSQSNFLVTKMIDVCNSGGDLAYASLLFKQVKEPNVFLYNAMIRAYTNNHL 92 (541)
Q Consensus 13 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~ 92 (541)
+......+|..+++++++.++.+.+ +++.+|+.+..++.+.|++++|.+.|.+. +|...|..++.++...|+
T Consensus 5 ~~~a~~~ll~~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~ 76 (449)
T 1b89_A 5 NTSAVQVLIEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGN 76 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cHHHHHHHHHHccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCC
Confidence 3455667888888888888887766 34569999999999999999999999764 577799999999999999
Q ss_pred hhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHH
Q 048358 93 YGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAH 172 (541)
Q Consensus 93 ~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 172 (541)
+++|+..++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|.
T Consensus 77 ~EeAi~yl~~ark~-------~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~ 142 (449)
T 1b89_A 77 WEELVKYLQMARKK-------ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAK 142 (449)
T ss_dssp ---------------------------------------CHHHHTTTTT-------CC----------------CTTTHH
T ss_pred HHHHHHHHHHHHHh-------CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHH
Confidence 99999977776664 4668889999999999999999988774 467789999999999999999999
Q ss_pred HHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHH
Q 048358 173 KVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISI 252 (541)
Q Consensus 173 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 252 (541)
..|..+ ..|..++.++.+.|++++|.+.+.++. ++.+|..++.+|...|+++.|......+. +.|+ ..
T Consensus 143 ~~Y~~a-----~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~ad--~l 210 (449)
T 1b89_A 143 LLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--EL 210 (449)
T ss_dssp HHHHHT-----TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCHH--HH
T ss_pred HHHHHh-----hhHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCHh--hH
Confidence 999988 589999999999999999999999994 88999999999999999999966555422 2343 35
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhc--CCHHHHHHHHHccCC--------CChhHHHHHH
Q 048358 253 VSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKC--GCINQASQLFDQMVE--------RDVVSWSTVI 322 (541)
Q Consensus 253 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~--------~~~~~~~~l~ 322 (541)
..++..|.+.|.++++..+++...... +-....|+.|.-+|++- +++.+..+.|..-.. .+...|..+.
T Consensus 211 ~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~ 289 (449)
T 1b89_A 211 EELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELV 289 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 578899999999999999999988765 55677888888887764 456667777665433 2567899999
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCH
Q 048358 323 GGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRL 402 (541)
Q Consensus 323 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 402 (541)
..|...++++.|... |.+. +|+...-..+.....+..+.+--.+...-.... .|.. .+.|+.++...=+.
T Consensus 290 ~ly~~~~e~d~A~~t---m~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~---~p~~--l~~ll~~l~~~ld~ 359 (449)
T 1b89_A 290 FLYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF---KPLL--LNDLLMVLSPRLDH 359 (449)
T ss_dssp HHHHHTTCHHHHHHH---HHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH---CGGG--HHHHHHHHGGGCCH
T ss_pred HHHHhhchHHHHHHH---HHhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc---CHHH--HHHHHHHHHhccCc
Confidence 999999999998764 4443 344333333444444555544433333333332 2443 57788888777788
Q ss_pred HHHHHHHHhCCCCCCHHH
Q 048358 403 DQALNIIEEMPMKPDAKI 420 (541)
Q Consensus 403 ~~A~~~~~~~~~~p~~~~ 420 (541)
..+.++|++.+.-|-...
T Consensus 360 ~r~v~~~~~~~~l~l~~~ 377 (449)
T 1b89_A 360 TRAVNYFSKVKQLPLVKP 377 (449)
T ss_dssp HHHHHHHHHTTCTTTTHH
T ss_pred HHHHHHHHHcCCcHHHHH
Confidence 888888888754343333
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.80 E-value=9.5e-18 Score=157.82 Aligned_cols=277 Identities=12% Similarity=0.050 Sum_probs=195.7
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHH
Q 048358 214 IVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEM 293 (541)
Q Consensus 214 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 293 (541)
...+..+...+...|++++|..+|+++.+.. +.+...+..+...+...|+++.|...++.+.+.. +.
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~----------- 87 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PK----------- 87 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT-----------
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cC-----------
Confidence 3456677777888888888888888877653 2344445455555555555555555555554442 12
Q ss_pred HHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH--------------HH-
Q 048358 294 YIKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGL--------------LS- 358 (541)
Q Consensus 294 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l--------------~~- 358 (541)
+..++..+...+...|++++|...++++.+.. +.+...+..+ ..
T Consensus 88 --------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (327)
T 3cv0_A 88 --------------------DIAVHAALAVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDF 146 (327)
T ss_dssp --------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------C
T ss_pred --------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhH
Confidence 33444555555555555555555555555442 2222222222 22
Q ss_pred HHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHH
Q 048358 359 ACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEI 436 (541)
Q Consensus 359 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~ 436 (541)
.+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++ ...| +..++..+...+...|++++
T Consensus 147 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 224 (327)
T 3cv0_A 147 FFAAPNEYRECRTLLHAALEMN--PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQE 224 (327)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Confidence 3778899999999999998753 557788999999999999999999999987 3344 57889999999999999999
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHH
Q 048358 437 AVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFW 516 (541)
Q Consensus 437 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 516 (541)
|...++++++..|.++..+..++.+|.+.|++++|.+.++++........... +.........++.
T Consensus 225 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~--------------~~~~~~~~~~~~~ 290 (327)
T 3cv0_A 225 ALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPT--------------GEASREATRSMWD 290 (327)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-------------------CCTHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcccccc--------------ccchhhcCHHHHH
Confidence 99999999999999999999999999999999999999999876432110000 0000122688899
Q ss_pred HHHHHHHHHhcccCCcccccccCC
Q 048358 517 LLELLALHQDRAKDVIDIMYEDIG 540 (541)
Q Consensus 517 ~l~~~~~~~~~~~~a~~~~~~~i~ 540 (541)
.++.++..+|+.++|...+.++++
T Consensus 291 ~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 291 FFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999999999999999999888763
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-17 Score=157.68 Aligned_cols=275 Identities=9% Similarity=0.020 Sum_probs=217.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 048358 182 DIVAWNNLISGYARLGQMKKARMLFDKMP---YTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPA 258 (541)
Q Consensus 182 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 258 (541)
+...+..+...+...|++++|...|+++. +.+..+|..+..++...|++++|...|+++.+.. +.+..++..+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 44567788899999999999999999875 3466788999999999999999999999998874 4567788888888
Q ss_pred HHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHH--HHHhcCChHHHHH
Q 048358 259 CAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIG--GLANHGKAHKAIH 336 (541)
Q Consensus 259 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~ 336 (541)
+...|+++.|...++.+.+.... +...+..+.... ++......+.. .+...|++++|..
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~A~~ 159 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD------------------VDIDDLNVQSEDFFFAAPNEYRECRT 159 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------------------------CCTTSHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH------------------HHHHHHHHHHHhHHHHHcccHHHHHH
Confidence 99999999999999988876432 222222221110 11111112212 2667788999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 048358 337 LFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMK 415 (541)
Q Consensus 337 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 415 (541)
.++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.++++ ...
T Consensus 160 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 236 (327)
T 3cv0_A 160 LLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN 236 (327)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 999988865 5577888899999999999999999999998753 556788899999999999999999999987 334
Q ss_pred C-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC------------CcchHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048358 416 P-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPE------------DTGNYVLLSNIYAKHGRWEDVSRMRKLIR 479 (541)
Q Consensus 416 p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 479 (541)
| +..++..+...+...|++++|...++++++..|. ++..+..++.++.+.|++++|..++++..
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4 5788889999999999999999999999999988 78899999999999999999999887543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.9e-18 Score=157.79 Aligned_cols=245 Identities=11% Similarity=0.050 Sum_probs=201.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCh--HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcC
Q 048358 221 ISGYTHIGSYAEALDVFRQMQMVGIEPDE--ISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCG 298 (541)
Q Consensus 221 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 298 (541)
++-....|+++.|+..+++.... .|+. .....+..++...|+++.|...++. .-+|+..++..+...+...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 45567789999999999876533 4543 3456678899999999999986654 24567788999999999999
Q ss_pred CHHHHHHHHHccC----CC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 048358 299 CINQASQLFDQMV----ER-DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYF 373 (541)
Q Consensus 299 ~~~~A~~~~~~~~----~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 373 (541)
+.++|.+.++++. .| ++..+..+...+...|++++|+..+++ +.+...+..++..+.+.|++++|.+.|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999873 24 566778888999999999999999987 567888999999999999999999999
Q ss_pred HHhhhhcCCCCcHh-H--HHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccC
Q 048358 374 DSMKRDHHIEHKIE-H--YGCLVDLLGRAGRLDQALNIIEEM--PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLE 448 (541)
Q Consensus 374 ~~~~~~~~~~~~~~-~--~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 448 (541)
+.+.+.. |+.. . ...++..+...|++++|..+|+++ ....+...++.+..++.+.|++++|+..++++++.+
T Consensus 154 ~~~~~~~---p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQD---EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHHC---TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhC---cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9998753 4432 1 122334445569999999999998 333478889999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCCHHH-HHHHHHHhhh
Q 048358 449 PEDTGNYVLLSNIYAKHGRWED-VSRMRKLIRS 480 (541)
Q Consensus 449 ~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~ 480 (541)
|+++.++..++.++...|++++ +.++++++.+
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999976 5788888765
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.2e-16 Score=138.70 Aligned_cols=193 Identities=15% Similarity=0.099 Sum_probs=89.4
Q ss_pred ccHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048358 282 RRTVICNALIEMYIKCGCINQASQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLS 358 (541)
Q Consensus 282 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 358 (541)
++...+..+...+.+.|++++|...|++..+ .++..+..+..++...|++++|+..|++..+.. |.+...+..+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 3444555555555555555555555555422 134455555555555555555555555555543 334444555555
Q ss_pred HHhcc-----------CcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 048358 359 ACAHT-----------GFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPDAKIWGSLLS 426 (541)
Q Consensus 359 ~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~ 426 (541)
++... |++++|+..|++..+.. |.+...+..+..+|...|++++|+..|++. .+..+...+..+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN--PRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHH
Confidence 55555 55555555555554421 233444444555555555555555555444 11134444444555
Q ss_pred HHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHH
Q 048358 427 SCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKL 477 (541)
Q Consensus 427 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 477 (541)
++...|++++|+..++++++.+|+++..+..++.++.+.|++++|...+++
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 555555555555555555555555555555555555555555555544443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.4e-16 Score=135.78 Aligned_cols=195 Identities=16% Similarity=0.082 Sum_probs=146.8
Q ss_pred CCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC--C-ChhHHHHHH
Q 048358 246 EPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE--R-DVVSWSTVI 322 (541)
Q Consensus 246 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~ 322 (541)
+++...+..+...+...|++++|...++.+.+.. +.+...+..+..++.+.|++++|...|++..+ | +...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 5667778888888889999999999999888765 44577888888999999999999999988743 3 566888888
Q ss_pred HHHHhc-----------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHH
Q 048358 323 GGLANH-----------GKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGC 391 (541)
Q Consensus 323 ~~~~~~-----------~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 391 (541)
.++... |++++|+..|++..+.. |-+...+..+..++...|++++|+..|++..+.. .+...+..
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~ 156 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE---DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc---cchHHHHH
Confidence 888888 99999999999888865 4567778888888899999999999999988753 67777888
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHh
Q 048358 392 LVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLL 445 (541)
Q Consensus 392 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 445 (541)
+..+|...|++++|+..|++. ...| +...+..+...+...|++++|+..+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 899999999999999998887 4445 56778888888889999999988887653
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-15 Score=137.34 Aligned_cols=211 Identities=12% Similarity=0.046 Sum_probs=153.3
Q ss_pred HHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC--C----C----hhHHHHHHHHHHh
Q 048358 258 ACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE--R----D----VVSWSTVIGGLAN 327 (541)
Q Consensus 258 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~----~----~~~~~~l~~~~~~ 327 (541)
.+...|+++.|...++.+.+.. .+..++..+..+|...|++++|...+++..+ | + ..+|..+...+..
T Consensus 14 ~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 91 (258)
T 3uq3_A 14 KFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHK 91 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHH
Confidence 3333334444444443333333 3344455555555555555555555555422 1 1 4567777788888
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHH
Q 048358 328 HGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALN 407 (541)
Q Consensus 328 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 407 (541)
.|++++|...|+++... .|+. ..+...|++++|...++.+... .+.+...+..+...+...|++++|..
T Consensus 92 ~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~ 160 (258)
T 3uq3_A 92 LGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVK 160 (258)
T ss_dssp TTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHH
Confidence 88888888888888774 3443 3455668889999999988863 24556778888999999999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 408 IIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 408 ~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
.+++. ...| +..++..+...+...|++++|+..++++++..|+++..+..++.++.+.|++++|...+++..+.
T Consensus 161 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 161 AYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99887 3334 57888889999999999999999999999999999999999999999999999999999988764
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.70 E-value=9.4e-16 Score=138.74 Aligned_cols=237 Identities=9% Similarity=0.023 Sum_probs=194.6
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCc--c----HhHHH
Q 048358 215 VSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLR--R----TVICN 288 (541)
Q Consensus 215 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~~ 288 (541)
..|..+...+...|++++|+..|+++.+.. .+...+..+...+...|+++.|...+..+.+..... + ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 467778888888899999999998888876 777888888888888999999988888887653211 1 57888
Q ss_pred HHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHH
Q 048358 289 ALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNE 368 (541)
Q Consensus 289 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 368 (541)
.+...|...|++++|...|+++.+.+.. ...+...|++++|...++++.... +.+...+..+...+...|++++
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 157 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPN 157 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHH
Confidence 8999999999999999999888442211 245666788999999999998864 4556778888999999999999
Q ss_pred HHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 048358 369 GLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLV 446 (541)
Q Consensus 369 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 446 (541)
|...|+++.+.. +.+...+..+...|...|++++|.+.+++. ...| +...+..+...+...|++++|...++++++
T Consensus 158 A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 158 AVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999998753 566788999999999999999999999988 4445 578899999999999999999999999999
Q ss_pred cC------CCCcchHHHHHHH
Q 048358 447 LE------PEDTGNYVLLSNI 461 (541)
Q Consensus 447 ~~------~~~~~~~~~l~~~ 461 (541)
.. |.+...+..+..+
T Consensus 236 ~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 236 KDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHTTTTHHHHHHHHHHT
T ss_pred hChhhcCCCchHHHHHHHHHh
Confidence 88 7777766666543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.68 E-value=5.7e-15 Score=134.82 Aligned_cols=246 Identities=13% Similarity=0.011 Sum_probs=157.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCc--cHhHHHHHHHHH
Q 048358 217 WTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLR--RTVICNALIEMY 294 (541)
Q Consensus 217 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~ 294 (541)
+......+...|++++|+..|++..+.. +.+...+..+...+...|+++.|...++.+.+....+ ....|..+...|
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3445555666666666666666665542 2233355555556666666666666666665522111 122366677777
Q ss_pred HhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 048358 295 IKCGCINQASQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLM 371 (541)
Q Consensus 295 ~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 371 (541)
...|++++|...|++..+ .+..+|..+...|...|++++|...|++..+.. +.+...+..+...+...+++++|..
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777776632 355677777777777788888887777777653 4455566666623333458888888
Q ss_pred HHHHhhhhcCCCCcHhHHHHHHHHHHhcCC---HHHHHHHHHhC----CCCCC------HHHHHHHHHHHhhcCCHHHHH
Q 048358 372 YFDSMKRDHHIEHKIEHYGCLVDLLGRAGR---LDQALNIIEEM----PMKPD------AKIWGSLLSSCRTYSNLEIAV 438 (541)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~----~~~p~------~~~~~~l~~~~~~~~~~~~a~ 438 (541)
.|+.+.+.. +.+...+..+...+...|+ +++|...+++. ...|+ ..+|..+...+...|++++|+
T Consensus 164 ~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 164 SFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 888877642 4446667777777777776 66676666665 11233 256777888889999999999
Q ss_pred HHHHHHhccCCCCcchHHHHHHHHHhcC
Q 048358 439 IAMEHLLVLEPEDTGNYVLLSNIYAKHG 466 (541)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g 466 (541)
..++++++++|+++.++..+.......+
T Consensus 242 ~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 242 AAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 9999999999999888888777665544
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.6e-14 Score=131.93 Aligned_cols=244 Identities=11% Similarity=-0.017 Sum_probs=196.5
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC--CCh----hHHHHHHHH
Q 048358 251 SIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE--RDV----VSWSTVIGG 324 (541)
Q Consensus 251 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~l~~~ 324 (541)
.+......+...|+++.|...++.+.+.. +.+...+..+..+|...|++++|...+++..+ ++. .+|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34456677889999999999999999875 34566888899999999999999999998854 232 248899999
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHH
Q 048358 325 LANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQ 404 (541)
Q Consensus 325 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 404 (541)
+...|++++|+..|++..+.. +.+...+..+...|...|++++|+..|++..+. .+.+...|..+...+...+++++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998875 556788999999999999999999999999874 35567778888834444569999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHhhcCC---HHHHHHHHHHHhccC---CCC-----cchHHHHHHHHHhcCCHHHH
Q 048358 405 ALNIIEEM-PMKP-DAKIWGSLLSSCRTYSN---LEIAVIAMEHLLVLE---PED-----TGNYVLLSNIYAKHGRWEDV 471 (541)
Q Consensus 405 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~---~~~-----~~~~~~l~~~~~~~g~~~~A 471 (541)
|.+.|+++ ...| +...+..+...+...|+ +++|+..++++++.. |+. ..+|..++.+|.+.|++++|
T Consensus 161 A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 161 ADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999988 4455 46777788888888888 888999999998765 332 25888899999999999999
Q ss_pred HHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHH
Q 048358 472 SRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALH 524 (541)
Q Consensus 472 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 524 (541)
.+.++++.+ ++|+++.+...++.+...
T Consensus 241 ~~~~~~al~--------------------------~~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 241 DAAWKNILA--------------------------LDPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp HHHHHHHHH--------------------------HCTTCHHHHHHHC-----
T ss_pred HHHHHHHHh--------------------------cCccHHHHHHHhhhhhcc
Confidence 999999876 357777777766665543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.7e-14 Score=141.56 Aligned_cols=343 Identities=13% Similarity=0.016 Sum_probs=218.8
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCCh---HHHHHHHhhcCCCChhhHHHHHHHHHhcC-
Q 048358 122 FVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDEL---IEAHKVFEEMTDRDIVAWNNLISGYARLG- 197 (541)
Q Consensus 122 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~l~~~~~~~~- 197 (541)
.+...+.+.|++++|.+.++...+.| +...+..|...|...|+. ++|...|++..+.+...+..+...+...+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCC
Confidence 35667778899999999999998887 334445566677777877 89999998887766667777777555554
Q ss_pred ----CHHHHHHHHhcCCCC-CcchHHHHHHHHHhcCChH---HHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHH
Q 048358 198 ----QMKKARMLFDKMPYT-TIVSWTAMISGYTHIGSYA---EALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGE 269 (541)
Q Consensus 198 ----~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~---~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 269 (541)
++++|.+.|++...+ ++.++..|...|...+..+ ++.+.+......|. ......+...+...+.++.+.
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGGH
T ss_pred CCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccCH
Confidence 678888888876543 4567888888887766543 34555555554442 334555666666666554443
Q ss_pred HHHHHHHHhCCCccHhHHHHHHHHHHhcC---CHHHHHHHHHccCCC---ChhHHHHHHHHHHhc----CChHHHHHHHH
Q 048358 270 WIHMYCDKNHLLRRTVICNALIEMYIKCG---CINQASQLFDQMVER---DVVSWSTVIGGLANH----GKAHKAIHLFH 339 (541)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~----~~~~~a~~~~~ 339 (541)
.......+.-...++..+..|...|...| +.++|...|+...+. +...+..+...|... +++++|..+|+
T Consensus 162 ~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~ 241 (452)
T 3e4b_A 162 DDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLE 241 (452)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 33333332222334447788888888888 888888888877432 333446677777554 68888998888
Q ss_pred HHHhCCCCCCHHHHHHHHHH-H--hccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcC-----CHHHHHHHHHh
Q 048358 340 EMQRLKVPPNDITFIGLLSA-C--AHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAG-----RLDQALNIIEE 411 (541)
Q Consensus 340 ~m~~~~~~p~~~~~~~l~~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~ 411 (541)
+.. .| +...+..+... + ...+++++|...|++..+. | +...+..|...|. .| ++++|.++|++
T Consensus 242 ~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~ 312 (452)
T 3e4b_A 242 KIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEK 312 (452)
T ss_dssp HHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHT
T ss_pred HHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHH
Confidence 877 33 44556666655 3 4578889999988888763 2 5666777777776 45 88899998888
Q ss_pred CCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh----cCCHHHHHHHHHHhhhCC
Q 048358 412 MPMKPDAKIWGSLLSSCRT----YSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAK----HGRWEDVSRMRKLIRSKS 482 (541)
Q Consensus 412 ~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~ 482 (541)
.- ..+...+..+...|.. ..++++|...|+++.+. .++.....|+.+|.. ..+.++|...++...+.|
T Consensus 313 Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 313 AV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp TT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred Hh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 87 5577777777776655 34888899988888774 456678888888875 458888888888887765
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.8e-16 Score=160.66 Aligned_cols=146 Identities=14% Similarity=0.115 Sum_probs=115.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhcC-------CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHH
Q 048358 184 VAWNNLISGYARLGQMKKARMLFDKM-------PYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVL 256 (541)
Q Consensus 184 ~~~~~l~~~~~~~~~~~~A~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 256 (541)
.+|+++|++|++.|++++|.++|+.| ..||+++||+||.+|++.|++++|.++|++|.+.|+.||..||+++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 47777788888888888888887654 26899999999999999999999999999999999999999999999
Q ss_pred HHHHccCCh-HHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC-----CChhHHHHHHHHHHhcC
Q 048358 257 PACAQLGSL-ELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE-----RDVVSWSTVIGGLANHG 329 (541)
Q Consensus 257 ~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~ 329 (541)
.++++.|+. +.|.++|++|.+.|+.||..+|++++..+.+.+-++.+.++...+.. +.+.+...|.+.|.+.+
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 999999985 78999999999999999999999999877776544444444333311 11334444555555443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.64 E-value=6.1e-14 Score=123.79 Aligned_cols=198 Identities=13% Similarity=0.046 Sum_probs=156.2
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048358 283 RTVICNALIEMYIKCGCINQASQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSA 359 (541)
Q Consensus 283 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 359 (541)
+..++..++..+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 455677777778888888888888877632 356677888888888888888888888887764 5567778888888
Q ss_pred Hhcc-CcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHH
Q 048358 360 CAHT-GFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEI 436 (541)
Q Consensus 360 ~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~ 436 (541)
+... |++++|...++.+.+....+.+...+..+...+...|++++|...++++ ...| +...+..+...+...|++++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 8888 8899998888888762122334667788888888899999998888877 3334 47778888888888999999
Q ss_pred HHHHHHHHhccCC-CCcchHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 437 AVIAMEHLLVLEP-EDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 437 a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
|...++++++..| .++..+..++..+...|+.++|..+++.+...
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 9999999988888 88888888888888899999999888887653
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.7e-15 Score=144.66 Aligned_cols=299 Identities=13% Similarity=0.016 Sum_probs=216.7
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----hHHHHHHHHHHHccCChHHHHHHHHHHHHh----CCC-ccHh
Q 048358 215 VSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPD----EISIVSVLPACAQLGSLELGEWIHMYCDKN----HLL-RRTV 285 (541)
Q Consensus 215 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~ 285 (541)
..+......+...|++++|...|++..+.+ +.+ ...+..+...+...|+++.|...++.+.+. +.. ....
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 445566677777888888888888877653 222 245666677777788888888877766543 111 2245
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHccCC-----CC----hhHHHHHHHHHHhcCC--------------------hHHHHH
Q 048358 286 ICNALIEMYIKCGCINQASQLFDQMVE-----RD----VVSWSTVIGGLANHGK--------------------AHKAIH 336 (541)
Q Consensus 286 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~a~~ 336 (541)
++..+...|...|++++|...+++..+ ++ ..++..+...|...|+ +++|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 677788888888999988888877633 12 3477788888888899 899998
Q ss_pred HHHHHHhC----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCc----HhHHHHHHHHHHhcCCHHHHHH
Q 048358 337 LFHEMQRL----KVPP-NDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHK----IEHYGCLVDLLGRAGRLDQALN 407 (541)
Q Consensus 337 ~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~ 407 (541)
.+++.... +-.| ...++..+...+...|++++|...+++..+...-.++ ..++..+...|...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 88876542 2111 2346778888899999999999999988753211122 3378889999999999999999
Q ss_pred HHHhC-CC---CCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC------cchHHHHHHHHHhcCCHHHHHH
Q 048358 408 IIEEM-PM---KPD----AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPED------TGNYVLLSNIYAKHGRWEDVSR 473 (541)
Q Consensus 408 ~~~~~-~~---~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~ 473 (541)
.+++. .+ .++ ..++..+...+...|++++|...++++++..+.. ..++..++.+|...|++++|..
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99876 11 112 5677888888999999999999999998865332 5588899999999999999999
Q ss_pred HHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCccc
Q 048358 474 MRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDI 534 (541)
Q Consensus 474 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 534 (541)
.+++..+.... ....|....++..++.++..+|+.......
T Consensus 329 ~~~~al~~~~~--------------------~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~ 369 (406)
T 3sf4_A 329 FAEKHLEISRE--------------------VGDKSGELTARLNLSDLQMVLGLSYSTNNS 369 (406)
T ss_dssp HHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHHHHHHTTSCC---
T ss_pred HHHHHHHHHHH--------------------hcCCcchhHHHHHHHHHHHHhhHhHHHHHH
Confidence 99987653210 112456678899999999999987554433
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=6.4e-15 Score=131.94 Aligned_cols=196 Identities=12% Similarity=0.139 Sum_probs=146.1
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048358 283 RTVICNALIEMYIKCGCINQASQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSA 359 (541)
Q Consensus 283 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 359 (541)
....+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 345667777788888888888888887743 356678888888888899999999998888764 5567788888888
Q ss_pred HhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHH
Q 048358 360 CAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIA 437 (541)
Q Consensus 360 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a 437 (541)
+...|++++|.+.++++.+.. +.+...+..+...+.+.|++++|.+.++++ ...| +...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 888999999999999888743 556777888888899999999999988887 3334 577888888888999999999
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 438 VIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
+..++++++..|.++.++..++.+|...|++++|...++++.+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 99999999999988889999999999999999999999988663
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=7.4e-17 Score=163.48 Aligned_cols=148 Identities=15% Similarity=0.132 Sum_probs=121.8
Q ss_pred chhHHHHHHHHHHcCCChHHHHHHHhcCC-------CCCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCc
Q 048358 45 SNFLVTKMIDVCNSGGDLAYASLLFKQVK-------EPNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDK 117 (541)
Q Consensus 45 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~ 117 (541)
-..+||++|++||+.|++++|.++|+.|. .||+++||+||.+|++.|++++|.++|++|.+.|+ .||.
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~-----~PDv 200 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGL-----TPDL 200 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC-----CCCH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-----CCcH
Confidence 45689999999999999999999997653 49999999999999999999999999999999999 9999
Q ss_pred ccHHHHHHHHhccCCc-hHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCC-----CChhhHHHHHH
Q 048358 118 FTLPFVIKSCAGLLCP-SLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTD-----RDIVAWNNLIS 191 (541)
Q Consensus 118 ~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~ 191 (541)
.||+++|.++++.|+. +.|.+++++|.+.|+.||..+|+.++....+.+-++.+.++...+.. +...+...|.+
T Consensus 201 vTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 201 LSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHH
Confidence 9999999999999986 78899999999999999999999998776665433333333222221 12345555666
Q ss_pred HHHhcC
Q 048358 192 GYARLG 197 (541)
Q Consensus 192 ~~~~~~ 197 (541)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 666654
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=3.1e-14 Score=130.09 Aligned_cols=242 Identities=10% Similarity=-0.082 Sum_probs=187.1
Q ss_pred HhcCChHHHHHHHHHHHHCCCC---CChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHH
Q 048358 225 THIGSYAEALDVFRQMQMVGIE---PDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCIN 301 (541)
Q Consensus 225 ~~~g~~~~A~~~~~~m~~~~~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 301 (541)
...|++++|+..|+++.+.... .+..++..+...+...|+++.|...++.+.+.. +.+..++..++..|...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 3457788888888888865321 134567777788888888888888888888775 345778888999999999999
Q ss_pred HHHHHHHccCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 048358 302 QASQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKR 378 (541)
Q Consensus 302 ~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 378 (541)
+|...|+++.+ .+..++..+...|...|++++|...|+++.+.. |+.......+..+...|++++|...++....
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99999988743 367789999999999999999999999998854 5544445555556777999999999988877
Q ss_pred hcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCc
Q 048358 379 DHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPD-----AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDT 452 (541)
Q Consensus 379 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 452 (541)
.. +++...+ .++..+...++.++|.+.+++. ...|+ ..++..+...+...|++++|...++++++.+|++.
T Consensus 173 ~~--~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 249 (275)
T 1xnf_A 173 KS--DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 249 (275)
T ss_dssp HS--CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred cC--CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH
Confidence 43 4444444 4777788888899999999887 43342 57788888999999999999999999999998875
Q ss_pred chHHHHHHHHHhcCCHHHHHHHH
Q 048358 453 GNYVLLSNIYAKHGRWEDVSRMR 475 (541)
Q Consensus 453 ~~~~~l~~~~~~~g~~~~A~~~~ 475 (541)
.. .+.++...|++++|.+.+
T Consensus 250 ~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 VE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH---HHHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHHhhHHHH
Confidence 44 366788889999988766
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.63 E-value=4e-14 Score=134.55 Aligned_cols=245 Identities=9% Similarity=0.115 Sum_probs=190.3
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHH
Q 048358 215 VSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMY 294 (541)
Q Consensus 215 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 294 (541)
.+|..+..++...|++++|+..|++.+.. .|+ +..+|+.+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~----------------------------------~~~a~~~~g~~l 141 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIEL--NAA----------------------------------NYTVWHFRRVLL 141 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTT----------------------------------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHh--Ccc----------------------------------CHHHHHHHHHHH
Confidence 45666666777777777777777776654 333 455667777777
Q ss_pred HhcCC-HHHHHHHHHccCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 048358 295 IKCGC-INQASQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGL 370 (541)
Q Consensus 295 ~~~g~-~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 370 (541)
...|+ +++|+..|+++.+ .+...|..+..++...|++++|+..|+++++.. +-+...|..+..++...|++++|+
T Consensus 142 ~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl 220 (382)
T 2h6f_A 142 KSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNEL 220 (382)
T ss_dssp HHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred HHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHH
Confidence 77775 7777777777633 356678888888888888999999999888875 667788888888888899999999
Q ss_pred HHHHHhhhhcCCCCcHhHHHHHHHHHHh-cCCHHHH-----HHHHHhC-CCCC-CHHHHHHHHHHHhhcC--CHHHHHHH
Q 048358 371 MYFDSMKRDHHIEHKIEHYGCLVDLLGR-AGRLDQA-----LNIIEEM-PMKP-DAKIWGSLLSSCRTYS--NLEIAVIA 440 (541)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A-----~~~~~~~-~~~p-~~~~~~~l~~~~~~~~--~~~~a~~~ 440 (541)
..|+++.+.. +.+...|+.+..++.+ .|..++| ++.|++. .+.| +...|..+...+...| ++++|++.
T Consensus 221 ~~~~~al~l~--P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~ 298 (382)
T 2h6f_A 221 QYVDQLLKED--VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQ 298 (382)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHH
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHH
Confidence 9999988753 5567888888888888 5665777 4667666 5556 5678888888888888 68999999
Q ss_pred HHHHhccCCCCcchHHHHHHHHHhcC---------CHHHHHHHHHHh-hhCCCccCCceeEEEEcCEEEEEEeCCCCCCC
Q 048358 441 MEHLLVLEPEDTGNYVLLSNIYAKHG---------RWEDVSRMRKLI-RSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPF 510 (541)
Q Consensus 441 ~~~~~~~~~~~~~~~~~l~~~~~~~g---------~~~~A~~~~~~m-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 510 (541)
+.++ +.+|+++..+..++.+|.+.| .+++|.++++++ .+ .+|.
T Consensus 299 ~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~--------------------------~DP~ 351 (382)
T 2h6f_A 299 LLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE--------------------------KDTI 351 (382)
T ss_dssp HHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT--------------------------TCGG
T ss_pred HHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH--------------------------hCch
Confidence 9998 888999999999999999874 358999999997 44 4688
Q ss_pred hhHHHHHHHHHHHHH
Q 048358 511 LKDIFWLLELLALHQ 525 (541)
Q Consensus 511 ~~~~~~~l~~~~~~~ 525 (541)
....|..++..+..+
T Consensus 352 r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 352 RKEYWRYIGRSLQSK 366 (382)
T ss_dssp GHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 888888888877654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.62 E-value=5.4e-14 Score=133.63 Aligned_cols=244 Identities=10% Similarity=0.083 Sum_probs=179.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhcCC---CCCcchHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 048358 183 IVAWNNLISGYARLGQMKKARMLFDKMP---YTTIVSWTAMISGYTHIGS-YAEALDVFRQMQMVGIEPDEISIVSVLPA 258 (541)
Q Consensus 183 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 258 (541)
...|..+...+.+.|++++|++.|++.. ..+..+|+.+..++...|+ +++|+..|++++.. .|+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--~P~---------- 164 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPK---------- 164 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTT----------
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--CCC----------
Confidence 4578889999999999999999999876 3456789999999999997 99999999999876 343
Q ss_pred HHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHhcCChHHHH
Q 048358 259 CAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAI 335 (541)
Q Consensus 259 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 335 (541)
+..+|..+..++...|++++|+..|+++.+ .+..+|..+..++...|++++|+
T Consensus 165 ------------------------~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl 220 (382)
T 2h6f_A 165 ------------------------NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNEL 220 (382)
T ss_dssp ------------------------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred ------------------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHH
Confidence 344455555555566666666666665532 25556667777777777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhc-cCcHHHH-----HHHHHHhhhhcCCCCcHhHHHHHHHHHHhcC--CHHHHHH
Q 048358 336 HLFHEMQRLKVPPNDITFIGLLSACAH-TGFWNEG-----LMYFDSMKRDHHIEHKIEHYGCLVDLLGRAG--RLDQALN 407 (541)
Q Consensus 336 ~~~~~m~~~~~~p~~~~~~~l~~~~~~-~g~~~~a-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~ 407 (541)
..|+++++.. +-+...|+.+..++.. .|..++| +..|++..... +.+...|..+..++...| ++++|++
T Consensus 221 ~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~--P~~~~a~~~l~~ll~~~g~~~~~~a~~ 297 (382)
T 2h6f_A 221 QYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV--PHNESAWNYLKGILQDRGLSKYPNLLN 297 (382)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTTTCGGGCHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHccCccchHHHHH
Confidence 7777777765 4566677777777776 4554555 47777776642 455677788888887777 5788888
Q ss_pred HHHhCCCCC-CHHHHHHHHHHHhhcC---------CHHHHHHHHHHH-hccCCCCcchHHHHHHHHHhc
Q 048358 408 IIEEMPMKP-DAKIWGSLLSSCRTYS---------NLEIAVIAMEHL-LVLEPEDTGNYVLLSNIYAKH 465 (541)
Q Consensus 408 ~~~~~~~~p-~~~~~~~l~~~~~~~~---------~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~~ 465 (541)
.+.++...| +...+..+...+.+.| .+++|+.+++++ .+.+|.....|..++..+...
T Consensus 298 ~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 298 QLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 877774445 4567777777776653 258999999999 899999888898888877654
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.62 E-value=1e-13 Score=136.01 Aligned_cols=376 Identities=9% Similarity=-0.020 Sum_probs=256.4
Q ss_pred HHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCc---hHHHHHHHHHHHhCCCCchhhHHHH
Q 048358 82 AMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCP---SLGKQIHAHVCKFGLKSHSITENAL 158 (541)
Q Consensus 82 ~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~l 158 (541)
.+...+.+.|++++|...|++..+.| +...+..+...+...|++ ++|...|+...+. ++..+..|
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g--------~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~L 75 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG--------YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARL 75 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT--------CCTGGGTCC--------------------------------CHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHH
Confidence 46778889999999999999998854 455666677777778888 8999999988764 55566667
Q ss_pred HHHHHcCC-----ChHHHHHHHhhcCCC-ChhhHHHHHHHHHhcCCHHHH---HHHHhcCC-CCCcchHHHHHHHHHhcC
Q 048358 159 LDLYGKCD-----ELIEAHKVFEEMTDR-DIVAWNNLISGYARLGQMKKA---RMLFDKMP-YTTIVSWTAMISGYTHIG 228 (541)
Q Consensus 159 ~~~~~~~g-----~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A---~~~~~~~~-~~~~~~~~~l~~~~~~~g 228 (541)
...+...| ++++|...|++..++ +...+..|...|...+..+++ .+.+.... ..++..+..+...|...+
T Consensus 76 g~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 76 GRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQG 155 (452)
T ss_dssp HHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHT
T ss_pred HHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC
Confidence 77565555 788999999988764 455788888888876654443 33343332 345678888999999988
Q ss_pred ChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccC---ChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhc----CCHH
Q 048358 229 SYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLG---SLELGEWIHMYCDKNHLLRRTVICNALIEMYIKC----GCIN 301 (541)
Q Consensus 229 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~ 301 (541)
.++++........+.-...+...+..+...+...| +.++|...|+...+.|. ++...+..|...|... ++++
T Consensus 156 ~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~ 234 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEK 234 (452)
T ss_dssp CGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHH
T ss_pred CcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHH
Confidence 66555554333333222333337778888888899 89999999999999884 4455556678888665 7999
Q ss_pred HHHHHHHccCCCChhHHHHHHHH-H--HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-----cHHHHHHHH
Q 048358 302 QASQLFDQMVERDVVSWSTVIGG-L--ANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTG-----FWNEGLMYF 373 (541)
Q Consensus 302 ~A~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-----~~~~a~~~~ 373 (541)
+|...|+.....++..+..+... + ...+++++|..+|++..+.| +...+..+...|. .| ++++|...|
T Consensus 235 ~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~ 310 (452)
T 3e4b_A 235 TAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHF 310 (452)
T ss_dssp HHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHH
Confidence 99999999884467788888887 4 46899999999999999877 5667777777776 45 999999999
Q ss_pred HHhhhhcCCCCcHhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHh
Q 048358 374 DSMKRDHHIEHKIEHYGCLVDLLGR----AGRLDQALNIIEEMPMKPDAKIWGSLLSSCRT----YSNLEIAVIAMEHLL 445 (541)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~ 445 (541)
++.. . .+...+..|...|.. ..++++|.++|++.-...+......|...|.. ..+.++|...|+++.
T Consensus 311 ~~Aa-~----g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~ 385 (452)
T 3e4b_A 311 EKAV-G----REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAK 385 (452)
T ss_dssp HTTT-T----TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHH
T ss_pred HHHh-C----CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 9887 2 456677788888776 34999999999998323345556666666653 569999999999999
Q ss_pred ccCCCCcchHHHHHHHH--HhcCCHHHHHHHHHHhhhC
Q 048358 446 VLEPEDTGNYVLLSNIY--AKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 446 ~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~m~~~ 481 (541)
+.+++.. ...+..+. ...++.++|.++.++....
T Consensus 386 ~~g~~~a--~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 386 AQDTPEA--NDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp TTCCHHH--HHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHH--HHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 8776543 33444333 3345677888888876654
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-14 Score=132.23 Aligned_cols=242 Identities=11% Similarity=-0.030 Sum_probs=192.4
Q ss_pred HccCChHHHHHHHHHHHHhCC---CccHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHhcCChHH
Q 048358 260 AQLGSLELGEWIHMYCDKNHL---LRRTVICNALIEMYIKCGCINQASQLFDQMVE---RDVVSWSTVIGGLANHGKAHK 333 (541)
Q Consensus 260 ~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 333 (541)
...|+++.|...++.+.+... +.+..++..++..|...|++++|...|+++.+ .+..+|..+...|...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 345789999999999988642 23467889999999999999999999998843 467899999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 048358 334 AIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM- 412 (541)
Q Consensus 334 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 412 (541)
|...|+++.+.. +.+...+..+..++...|++++|...|+++.+.. |+..........+...|++++|...+++.
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD---PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999875 5567889999999999999999999999998753 44334444555667789999999999776
Q ss_pred CCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC----CcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCC
Q 048358 413 PMK-PDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPE----DTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTP 487 (541)
Q Consensus 413 ~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 487 (541)
... ++...+ .++..+...++.++|...++++.+..|. ++..+..++.+|.+.|++++|...++++...
T Consensus 172 ~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------ 244 (275)
T 1xnf_A 172 EKSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN------ 244 (275)
T ss_dssp HHSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT------
T ss_pred hcCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------
Confidence 222 333333 4677788889999999999999887653 3688999999999999999999999998764
Q ss_pred ceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCcccc
Q 048358 488 GCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIM 535 (541)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 535 (541)
+|++.. ..+..+..+|+.++|++.+
T Consensus 245 --------------------~p~~~~---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 245 --------------------NVHNFV---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --------------------CCTTCH---HHHHHHHHHHHHHHC----
T ss_pred --------------------CchhHH---HHHHHHHHHHHHHhhHHHH
Confidence 344433 3366778888888888765
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.62 E-value=8.3e-14 Score=125.50 Aligned_cols=197 Identities=8% Similarity=-0.037 Sum_probs=156.5
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048358 284 TVICNALIEMYIKCGCINQASQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSAC 360 (541)
Q Consensus 284 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 360 (541)
...+..+...+...|++++|...|+++.+ .+..++..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 45677777788888888888888877632 356677888888888888888888888887764 45677788888888
Q ss_pred hccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHH
Q 048358 361 AHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAV 438 (541)
Q Consensus 361 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~ 438 (541)
...|++++|..+++++......+.+...+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|.
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 8888888888888888761112335667788888888889999998888887 3334 5677888888888899999999
Q ss_pred HHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 439 IAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
..++++++..|.++..+..++.++...|++++|.+.++++.+.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 196 QYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999998888888888888888999999999999988888664
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=4e-14 Score=126.73 Aligned_cols=213 Identities=14% Similarity=0.116 Sum_probs=144.1
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHH
Q 048358 215 VSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMY 294 (541)
Q Consensus 215 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 294 (541)
..|..+...+...|++++|...|+++.+. .| .+...+..+...|
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~~----------------------------------~~~~~~~~la~~~ 67 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEE--NK----------------------------------EDAIPYINFANLL 67 (243)
T ss_dssp ------------------CCTTHHHHHTT--CT----------------------------------TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHh--Cc----------------------------------ccHHHHHHHHHHH
Confidence 45566666666667777777666666643 22 2344455555666
Q ss_pred HhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 048358 295 IKCGCINQASQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLM 371 (541)
Q Consensus 295 ~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 371 (541)
...|++++|...|+++.+ .+..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|..
T Consensus 68 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~ 146 (243)
T 2q7f_A 68 SSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALP 146 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHH
Confidence 666666666666655522 355667777788888888888888888887765 5567778888888889999999999
Q ss_pred HHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCC
Q 048358 372 YFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEP 449 (541)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 449 (541)
.++++.+.. +.+...+..+...+.+.|++++|.+.++++ ...| +..++..+...+...|++++|...++++++..|
T Consensus 147 ~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 147 YLQRAVELN--ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHhC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence 999888743 456778888899999999999999999887 3334 577888899999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhcC
Q 048358 450 EDTGNYVLLSNIYAKHG 466 (541)
Q Consensus 450 ~~~~~~~~l~~~~~~~g 466 (541)
+++..+..+.......|
T Consensus 225 ~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 225 DHMLALHAKKLLGHHHH 241 (243)
T ss_dssp TCHHHHHHHTC------
T ss_pred chHHHHHHHHHHHhhcc
Confidence 99888887766554433
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.4e-13 Score=117.41 Aligned_cols=166 Identities=14% Similarity=0.142 Sum_probs=144.1
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHH
Q 048358 314 DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLV 393 (541)
Q Consensus 314 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 393 (541)
++..|..+...|...|++++|+..|++..+.. |-+..++..+..++...|++++|...+....... +.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD--TTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--chhHHHHHHHH
Confidence 56678888899999999999999999988875 5677788888999999999999999999988743 55667778888
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHH
Q 048358 394 DLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDV 471 (541)
Q Consensus 394 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 471 (541)
..+...++++.|.+.+++. ...| +...+..+...+...|++++|++.|+++++.+|.++.+|..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 8899999999999998887 4444 5778888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCC
Q 048358 472 SRMRKLIRSKS 482 (541)
Q Consensus 472 ~~~~~~m~~~~ 482 (541)
.+.+++..+..
T Consensus 161 ~~~~~~al~~~ 171 (184)
T 3vtx_A 161 VKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhCC
Confidence 99999987754
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=5.8e-13 Score=121.53 Aligned_cols=224 Identities=13% Similarity=0.010 Sum_probs=112.3
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHc----cCChHHHHHHHHHHHHhCCCccHhHHH
Q 048358 213 TIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQ----LGSLELGEWIHMYCDKNHLLRRTVICN 288 (541)
Q Consensus 213 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 288 (541)
++.++..+...+...|++++|+..|++..+. -+...+..+...+.. .+++++|...++...+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4455666666677777777777777776652 233344444444555 555555555555555443 344444
Q ss_pred HHHHHHHh----cCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc--
Q 048358 289 ALIEMYIK----CGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAH-- 362 (541)
Q Consensus 289 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-- 362 (541)
.+...|.. .+++++|.. .|++..+.+ +...+..+...|..
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~-------------------------------~~~~a~~~~---~~~a~~~lg~~~~~~~ 124 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQ-------------------------------YYSKACDLK---YAEGCASLGGIYHDGK 124 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHH-------------------------------HHHHHHHTT---CHHHHHHHHHHHHHCS
T ss_pred HHHHHHhCCCCcccCHHHHHH-------------------------------HHHHHHHcC---CccHHHHHHHHHHcCC
Confidence 44444444 444444444 444444432 33344444444444
Q ss_pred --cCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cC
Q 048358 363 --TGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGR----AGRLDQALNIIEEMPMKPDAKIWGSLLSSCRT----YS 432 (541)
Q Consensus 363 --~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~ 432 (541)
.+++++|+..|++..+. + +...+..+...|.. .+++++|.+.|++.-...+...+..+...+.. .+
T Consensus 125 ~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 125 VVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCC
T ss_pred CcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCc
Confidence 44555555555444432 1 23334444444444 45555555555444111233444444445555 55
Q ss_pred CHHHHHHHHHHHhccCCCCcchHHHHHHHHHh----cCCHHHHHHHHHHhhhCC
Q 048358 433 NLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAK----HGRWEDVSRMRKLIRSKS 482 (541)
Q Consensus 433 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~ 482 (541)
++++|+..++++.+.+| +..+..++.+|.+ .+++++|.+.+++..+.+
T Consensus 201 ~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 201 NFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 55555555555555433 3445555555555 555555555555555443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.59 E-value=6.1e-13 Score=119.76 Aligned_cols=204 Identities=14% Similarity=0.054 Sum_probs=143.5
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHH
Q 048358 215 VSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMY 294 (541)
Q Consensus 215 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 294 (541)
..|..+...+...|++++|...|+++.+.. +. +..++..+...|
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~-----------------------------------~~~~~~~la~~~ 81 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PS-----------------------------------SADAHAALAVVF 81 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TT-----------------------------------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CC-----------------------------------hHHHHHHHHHHH
Confidence 455666666666666666666666665542 22 344455555555
Q ss_pred HhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHH
Q 048358 295 IKCGCINQASQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPP-NDITFIGLLSACAHTGFWNEGL 370 (541)
Q Consensus 295 ~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~ 370 (541)
...|++++|.+.|+++.+ .+...+..+...|...|++++|..+++++...+..| +...+..+...+...|++++|.
T Consensus 82 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 161 (252)
T 2ho1_A 82 QTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAK 161 (252)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 666666666666555422 245566677777777788888888888777632233 4556777778888888888888
Q ss_pred HHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccC
Q 048358 371 MYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLE 448 (541)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 448 (541)
..++++.+.. +.+...+..+...+...|++++|...++++ ...| +...+..+...+...|++++|.+.++++.+..
T Consensus 162 ~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 162 EYFEKSLRLN--RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 8888887642 445777888888888899999999888887 4344 56677778888889999999999999999998
Q ss_pred CCCcchHH
Q 048358 449 PEDTGNYV 456 (541)
Q Consensus 449 ~~~~~~~~ 456 (541)
|+++....
T Consensus 240 p~~~~~~~ 247 (252)
T 2ho1_A 240 PGSLEYQE 247 (252)
T ss_dssp TTSHHHHH
T ss_pred CCCHHHHH
Confidence 88776544
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=7.5e-13 Score=120.79 Aligned_cols=192 Identities=13% Similarity=0.015 Sum_probs=165.6
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHccCCC-ChhHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048358 283 RTVICNALIEMYIKCGCINQASQLFDQMVER-DVVSWSTVIGGLAN----HGKAHKAIHLFHEMQRLKVPPNDITFIGLL 357 (541)
Q Consensus 283 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 357 (541)
++.++..+...|...|++++|...|++..++ +..++..+...|.. .+++++|..+|++..+.+ +...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 4567777888888999999999999887654 56678888889999 999999999999999876 677888899
Q ss_pred HHHhc----cCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 048358 358 SACAH----TGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGR----AGRLDQALNIIEEMPMKPDAKIWGSLLSSCR 429 (541)
Q Consensus 358 ~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 429 (541)
..|.. .+++++|+..|++..+. .+...+..+...|.. .|++++|++.|++.-...+...+..+...+.
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~ 157 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDL----KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYD 157 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHc----CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 99998 99999999999999874 367788999999999 9999999999998822236777888888888
Q ss_pred h----cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh----cCCHHHHHHHHHHhhhCCC
Q 048358 430 T----YSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAK----HGRWEDVSRMRKLIRSKSM 483 (541)
Q Consensus 430 ~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 483 (541)
. .+++++|+..++++.+.+ ++..+..++.+|.. .+++++|...+++..+.+.
T Consensus 158 ~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 217 (273)
T 1ouv_A 158 AGRGTPKDLKKALASYDKACDLK--DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN 217 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC
T ss_pred cCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC
Confidence 7 999999999999999874 56789999999999 9999999999999888764
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.3e-14 Score=138.26 Aligned_cols=264 Identities=13% Similarity=0.030 Sum_probs=184.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh----HHHHHHHHHHHccCChHHHHHHHHHHHHh----C-CCccHhHH
Q 048358 217 WTAMISGYTHIGSYAEALDVFRQMQMVGIEPDE----ISIVSVLPACAQLGSLELGEWIHMYCDKN----H-LLRRTVIC 287 (541)
Q Consensus 217 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~ 287 (541)
+..+...+...|++++|+..|+++.+.+ +.+. ..+..+...+...|+++.|...++.+.+. + .+....++
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 3345556666777777777777766652 1122 34555666666777777777776665543 1 12234567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHccCCC---------ChhHHHHHHHHHHhcCC-----------------hHHHHHHHHHH
Q 048358 288 NALIEMYIKCGCINQASQLFDQMVER---------DVVSWSTVIGGLANHGK-----------------AHKAIHLFHEM 341 (541)
Q Consensus 288 ~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~m 341 (541)
..+...|...|++++|...+++..+. ...++..+...|...|+ +++|...+++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 77778888888888888877766321 23467777888888888 88888888776
Q ss_pred HhC----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCc----HhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 048358 342 QRL----KVPP-NDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHK----IEHYGCLVDLLGRAGRLDQALNIIEEM 412 (541)
Q Consensus 342 ~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 412 (541)
.+. +-++ ...++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|.+.+++.
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 542 1111 2346777888889999999999999888763211111 236788889999999999999998876
Q ss_pred -CCC---C----CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC------CcchHHHHHHHHHhcCCHHHHHHHHHHh
Q 048358 413 -PMK---P----DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPE------DTGNYVLLSNIYAKHGRWEDVSRMRKLI 478 (541)
Q Consensus 413 -~~~---p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m 478 (541)
... . ...++..+...+...|++++|...++++++..+. ...++..++.+|.+.|++++|...+++.
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 111 1 2467778888899999999999999999876433 2448888999999999999999999987
Q ss_pred hhC
Q 048358 479 RSK 481 (541)
Q Consensus 479 ~~~ 481 (541)
.+.
T Consensus 370 l~~ 372 (411)
T 4a1s_A 370 LQL 372 (411)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.3e-12 Score=115.11 Aligned_cols=207 Identities=14% Similarity=0.039 Sum_probs=142.8
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHH
Q 048358 214 IVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEM 293 (541)
Q Consensus 214 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 293 (541)
+..|..+...+...|++++|...|+++.+.. | .+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~----------------------------------~~~~~~~~l~~~ 51 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD--P----------------------------------KNELAWLVRAEI 51 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T----------------------------------TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--c----------------------------------cchHHHHHHHHH
Confidence 3455555566666666666666666655432 2 224455555666
Q ss_pred HHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHhc-CChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCcHHH
Q 048358 294 YIKCGCINQASQLFDQMVE---RDVVSWSTVIGGLANH-GKAHKAIHLFHEMQRLKVPPN-DITFIGLLSACAHTGFWNE 368 (541)
Q Consensus 294 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 368 (541)
|...|++++|...++++.+ .+..++..+...+... |++++|...++++.+.+..|+ ...+..+..++...|++++
T Consensus 52 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 131 (225)
T 2vq2_A 52 YQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGL 131 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHH
Confidence 6666666666666665522 3455677777777888 888888888888777322233 5667777888888888888
Q ss_pred HHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC--CHHHHHHHHHHHhhcCCHHHHHHHHHHHh
Q 048358 369 GLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP--DAKIWGSLLSSCRTYSNLEIAVIAMEHLL 445 (541)
Q Consensus 369 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 445 (541)
|...++++.+.. +.+...+..+...+...|++++|...++++ ...| +...+..+...+...|+.+.|...++.+.
T Consensus 132 A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 132 AEAYLKRSLAAQ--PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 888888887642 445777888888888888888888888877 3233 55666667777888899999999999988
Q ss_pred ccCCCCcchHHHH
Q 048358 446 VLEPEDTGNYVLL 458 (541)
Q Consensus 446 ~~~~~~~~~~~~l 458 (541)
+..|+++.....+
T Consensus 210 ~~~p~~~~~~~~l 222 (225)
T 2vq2_A 210 ANFPYSEELQTVL 222 (225)
T ss_dssp HHCTTCHHHHHHH
T ss_pred HhCCCCHHHHHHh
Confidence 8888887665543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.56 E-value=5.2e-14 Score=120.13 Aligned_cols=165 Identities=12% Similarity=0.141 Sum_probs=149.0
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 048358 348 PNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLL 425 (541)
Q Consensus 348 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 425 (541)
.+...|..+...|...|++++|+..|++..+.. |.+...+..+..+|.+.|++++|...++.. ...| +...+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD--PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 356789999999999999999999999999853 667888999999999999999999999988 3334 567778888
Q ss_pred HHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCC
Q 048358 426 SSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGD 505 (541)
Q Consensus 426 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (541)
..+...++++.|...++++.+..|.++.++..++.+|.+.|++++|++.+++..+
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~------------------------- 135 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTIS------------------------- 135 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHH-------------------------
Confidence 8899999999999999999999999999999999999999999999999999875
Q ss_pred CCCCChhHHHHHHHHHHHHHhcccCCcccccccCC
Q 048358 506 DTKPFLKDIFWLLELLALHQDRAKDVIDIMYEDIG 540 (541)
Q Consensus 506 ~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~i~ 540 (541)
.+|+++.++..+|.+|..+|+.++|++.++++|+
T Consensus 136 -~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 136 -IKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp -HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -hcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4689999999999999999999999999988764
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.8e-14 Score=139.18 Aligned_cols=206 Identities=9% Similarity=-0.049 Sum_probs=112.2
Q ss_pred hHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCH-HHHHHHHHccCC---CChhHHHHHHHHHHhcCChHHHHHHHHH
Q 048358 265 LELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCI-NQASQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAIHLFHE 340 (541)
Q Consensus 265 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 340 (541)
++.+...+....... +.+...+..+...|...|++ ++|.+.|++..+ .+..+|..+..+|...|++++|...|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444444333221 23455555566666666666 666666655522 2344556666666666666666666666
Q ss_pred HHhCCCCCCHHHHHHHHHHHhcc---------CcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhc--------CCHH
Q 048358 341 MQRLKVPPNDITFIGLLSACAHT---------GFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRA--------GRLD 403 (541)
Q Consensus 341 m~~~~~~p~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~ 403 (541)
..+.. |+...+..+..++... |++++|+..|++..+.. +.+...|..+..+|... |+++
T Consensus 163 al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 163 ALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 55542 4455555555556555 66666666666655532 33455555555555555 5555
Q ss_pred HHHHHHHhC-CCCC----CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 048358 404 QALNIIEEM-PMKP----DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMR 475 (541)
Q Consensus 404 ~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 475 (541)
+|++.|++. .+.| +...|..+..++...|++++|+..|+++++.+|+++..+..++.++...|++++|.+.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555555554 3233 44555555555555555555555555555555555555555555555555555555443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.56 E-value=6.1e-14 Score=132.04 Aligned_cols=264 Identities=14% Similarity=0.040 Sum_probs=191.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----hHHHHHHHHHHHccCChHHHHHHHHHHHHh----CCC-ccHhHH
Q 048358 217 WTAMISGYTHIGSYAEALDVFRQMQMVGIEPD----EISIVSVLPACAQLGSLELGEWIHMYCDKN----HLL-RRTVIC 287 (541)
Q Consensus 217 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~ 287 (541)
+......+...|++++|...|+++.+.. +.+ ...+..+...+...|+++.|...+..+.+. +.. ....++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 3344566777778888888887777653 222 245666677777778888877777765543 111 224567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHccCC-----CC----hhHHHHHHHHHHhcCC--------------------hHHHHHHH
Q 048358 288 NALIEMYIKCGCINQASQLFDQMVE-----RD----VVSWSTVIGGLANHGK--------------------AHKAIHLF 338 (541)
Q Consensus 288 ~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~ 338 (541)
..+...|...|++++|...+++..+ ++ ..++..+...+...|+ +++|...+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 7788888888888888888877632 12 3367778888888888 88888888
Q ss_pred HHHHhC----CCC-CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCC----cHhHHHHHHHHHHhcCCHHHHHHHH
Q 048358 339 HEMQRL----KVP-PNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEH----KIEHYGCLVDLLGRAGRLDQALNII 409 (541)
Q Consensus 339 ~~m~~~----~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~ 409 (541)
++.... +-. .....+..+...+...|++++|...+++..+.....+ ...++..+...+...|++++|.+.+
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 246 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 246 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 876542 111 1234677788889999999999999988865321111 1336788899999999999999999
Q ss_pred HhC-CC---CCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC------cchHHHHHHHHHhcCCHHHHHHHH
Q 048358 410 EEM-PM---KPD----AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPED------TGNYVLLSNIYAKHGRWEDVSRMR 475 (541)
Q Consensus 410 ~~~-~~---~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~ 475 (541)
++. .. .++ ..++..+...+...|++++|...++++++..+.. ..++..++.+|.+.|++++|...+
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (338)
T 3ro2_A 247 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 326 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 876 11 112 5667778888999999999999999998765332 447889999999999999999999
Q ss_pred HHhhhC
Q 048358 476 KLIRSK 481 (541)
Q Consensus 476 ~~m~~~ 481 (541)
++..+.
T Consensus 327 ~~a~~~ 332 (338)
T 3ro2_A 327 EKHLEI 332 (338)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 998764
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.9e-11 Score=124.04 Aligned_cols=409 Identities=10% Similarity=-0.004 Sum_probs=281.3
Q ss_pred HHHHHHhccCCchhHHHHHHHHHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHcCCC---hhHHHHHHHHhhhCC
Q 048358 34 HTQILKYLLSQSNFLVTKMIDVCNSGGDLAYASLLFKQVKE---PNVFLYNAMIRAYTNNHL---YGLAINLYKQMLRDP 107 (541)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~---~~~A~~~~~~m~~~~ 107 (541)
++..+... +-|...|..+++.+.+.+.++.+..+|+++.. .....|...+..-.+.|+ ++.+..+|++.+...
T Consensus 55 lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~ 133 (679)
T 4e6h_A 55 LNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKE 133 (679)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSS
T ss_pred HHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhc
Confidence 34444443 56899999999999999999999999999875 355678888888888898 999999999998864
Q ss_pred CCCCCCCCCcccHHHHHHHHhccCCc--------hHHHHHHHHHHHh-CC-CCc-hhhHHHHHHHHHc---------CCC
Q 048358 108 RTGSLILPDKFTLPFVIKSCAGLLCP--------SLGKQIHAHVCKF-GL-KSH-SITENALLDLYGK---------CDE 167 (541)
Q Consensus 108 ~~~~~~~p~~~~~~~ll~~~~~~~~~--------~~a~~~~~~~~~~-g~-~~~-~~~~~~l~~~~~~---------~g~ 167 (541)
. .+|+...|..-+....+.++. +...++|+.++.. |. .++ ...|...+..... .++
T Consensus 134 ~----~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~ 209 (679)
T 4e6h_A 134 L----GNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQR 209 (679)
T ss_dssp S----CCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHH
T ss_pred C----CCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhH
Confidence 1 038888888877766655543 3345777777654 65 454 4677777765443 345
Q ss_pred hHHHHHHHhhcCC-CCh---hhHH---HHHHHH----------HhcCCHHHHHHHHhc-------CCC------------
Q 048358 168 LIEAHKVFEEMTD-RDI---VAWN---NLISGY----------ARLGQMKKARMLFDK-------MPY------------ 211 (541)
Q Consensus 168 ~~~A~~~~~~~~~-~~~---~~~~---~l~~~~----------~~~~~~~~A~~~~~~-------~~~------------ 211 (541)
++.+..+|++... |.. ..|. .+.... -...+++.|...+.. +..
T Consensus 210 ~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~ 289 (679)
T 4e6h_A 210 VQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATES 289 (679)
T ss_dssp HHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTT
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhc
Confidence 7789999999876 311 2222 111111 001123334444432 111
Q ss_pred --C--C------cchHHHHHHHHHhcC-------ChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHH-HHHH
Q 048358 212 --T--T------IVSWTAMISGYTHIG-------SYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGE-WIHM 273 (541)
Q Consensus 212 --~--~------~~~~~~l~~~~~~~g-------~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~ 273 (541)
| + ...|...+..--..+ ..+.+..+|++.+... +-+...|...+.-+...|+.+.|. .+++
T Consensus 290 ~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~ 368 (679)
T 4e6h_A 290 NLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLK 368 (679)
T ss_dssp TSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHH
T ss_pred cCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 0 0 124555554433332 1234566788877652 446667777777777888888886 9999
Q ss_pred HHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC-------------CC------------hhHHHHHHHHHHhc
Q 048358 274 YCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE-------------RD------------VVSWSTVIGGLANH 328 (541)
Q Consensus 274 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------~~------------~~~~~~l~~~~~~~ 328 (541)
..... ++.+...|...+....+.|++++|..+|+.+.+ |+ ..+|...+....+.
T Consensus 369 rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~ 447 (679)
T 4e6h_A 369 LGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRI 447 (679)
T ss_dssp HHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHc
Confidence 88864 355677788888889999999999999988753 21 23577777777788
Q ss_pred CChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHhc-cCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 048358 329 GKAHKAIHLFHEMQRL-KVPPNDITFIGLLSACAH-TGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQAL 406 (541)
Q Consensus 329 ~~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 406 (541)
|+.+.|..+|.+..+. + .+....|...+..-.+ .++++.|..+|+...+.. +.+...|..++......|+.+.|.
T Consensus 448 ~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR 524 (679)
T 4e6h_A 448 QGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVK 524 (679)
T ss_dssp HCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHH
Confidence 8999999999998876 3 2233444433333233 355899999999998863 556677788888888899999999
Q ss_pred HHHHhC-CCCC----CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCc
Q 048358 407 NIIEEM-PMKP----DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDT 452 (541)
Q Consensus 407 ~~~~~~-~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 452 (541)
.+|++. ...| ....|...+..-...|+.+.+..+.+++.+..|+++
T Consensus 525 ~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 525 SLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 999987 3333 346788888888889999999999999999998864
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.3e-13 Score=133.19 Aligned_cols=212 Identities=11% Similarity=0.007 Sum_probs=181.4
Q ss_pred CChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCCh-HHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHH
Q 048358 228 GSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSL-ELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQL 306 (541)
Q Consensus 228 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 306 (541)
+.+++++..+++..... +.+...+..+...+...|++ ++|...++.+.+.. +.+...|..+..+|...|++++|...
T Consensus 82 ~~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34778888888766542 44777888889999999999 99999999999876 34578999999999999999999999
Q ss_pred HHccC--CCChhHHHHHHHHHHhc---------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc--------CcHH
Q 048358 307 FDQMV--ERDVVSWSTVIGGLANH---------GKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHT--------GFWN 367 (541)
Q Consensus 307 ~~~~~--~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--------g~~~ 367 (541)
|++.. .|+...+..+...|... |++++|+..|++..+.. +.+...+..+..+|... |+++
T Consensus 160 ~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 160 FSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 99984 46778888899999999 99999999999999875 56788899999999988 9999
Q ss_pred HHHHHHHHhhhhcCCC---CcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHH
Q 048358 368 EGLMYFDSMKRDHHIE---HKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAME 442 (541)
Q Consensus 368 ~a~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~ 442 (541)
+|+..|++..+.. + .+...|..+..+|...|++++|.+.|++. ...| +...+..+...+...|++++|++.+.
T Consensus 239 ~A~~~~~~al~~~--p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 239 QALSAYAQAEKVD--RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHC--GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC--CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999852 3 47888999999999999999999999988 4556 56778888888999999999988665
Q ss_pred HH
Q 048358 443 HL 444 (541)
Q Consensus 443 ~~ 444 (541)
++
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 44
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.4e-14 Score=139.30 Aligned_cols=269 Identities=13% Similarity=0.038 Sum_probs=210.3
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCcc---HhHHHHHHHHHHhcCCHHHHHHHHHccCC---------CChhHH
Q 048358 251 SIVSVLPACAQLGSLELGEWIHMYCDKNHLLRR---TVICNALIEMYIKCGCINQASQLFDQMVE---------RDVVSW 318 (541)
Q Consensus 251 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~ 318 (541)
.+..+...+...|+++.|...++.+.+...... ..++..+...|...|++++|...|++..+ ....++
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 344556678899999999999999998753321 24788899999999999999999987733 134578
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHhccCc-----------------HHHHHHHHHHh
Q 048358 319 STVIGGLANHGKAHKAIHLFHEMQRL----K-VPPNDITFIGLLSACAHTGF-----------------WNEGLMYFDSM 376 (541)
Q Consensus 319 ~~l~~~~~~~~~~~~a~~~~~~m~~~----~-~~p~~~~~~~l~~~~~~~g~-----------------~~~a~~~~~~~ 376 (541)
..+...|...|++++|...+++.... + .+....++..+...|...|+ +++|...+++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 88899999999999999999987653 1 12234577888889999999 99999998887
Q ss_pred hhhc---CC-CCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC---CC----HHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 048358 377 KRDH---HI-EHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMK---PD----AKIWGSLLSSCRTYSNLEIAVIAMEHL 444 (541)
Q Consensus 377 ~~~~---~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~---p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~ 444 (541)
.+.. +. +.....+..+...|...|++++|.+.+++. .+. ++ ..++..+...+...|++++|+..++++
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 5421 11 123457888999999999999999999887 211 22 237788888899999999999999999
Q ss_pred hccCCCC------cchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHH
Q 048358 445 LVLEPED------TGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLL 518 (541)
Q Consensus 445 ~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l 518 (541)
++..+.. ..++..++.+|...|++++|...+++........ ...+....++..+
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--------------------~~~~~~~~~~~~l 349 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL--------------------GDRIGEARACWSL 349 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--------------------TCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC--------------------CChHHHHHHHHHH
Confidence 9876533 5688899999999999999999999986542110 1124456789999
Q ss_pred HHHHHHHhcccCCcccccccC
Q 048358 519 ELLALHQDRAKDVIDIMYEDI 539 (541)
Q Consensus 519 ~~~~~~~~~~~~a~~~~~~~i 539 (541)
+.+|..+|+.++|.+.+++++
T Consensus 350 a~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 350 GNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHH
Confidence 999999999999999887764
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.3e-13 Score=131.91 Aligned_cols=294 Identities=11% Similarity=0.037 Sum_probs=180.9
Q ss_pred CchhhHHHHHHHHHcCCChHHHHHHHhhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhc
Q 048358 150 SHSITENALLDLYGKCDELIEAHKVFEEMTD--RDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHI 227 (541)
Q Consensus 150 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 227 (541)
.....+......+...|++++|...|++..+ |+.... -..+|..+..++...
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------------------------~~~~~~~l~~~~~~~ 60 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKT--------------------------LSAIYSQLGNAYFYL 60 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHH--------------------------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHH--------------------------HHHHHHHHHHHHHHh
Confidence 3344555566667777777777777766543 211000 012344444444455
Q ss_pred CChHHHHHHHHHHHHC----CCCC-ChHHHHHHHHHHHccCChHHHHHHHHHHHHhCC----C-ccHhHHHHHHHHHHhc
Q 048358 228 GSYAEALDVFRQMQMV----GIEP-DEISIVSVLPACAQLGSLELGEWIHMYCDKNHL----L-RRTVICNALIEMYIKC 297 (541)
Q Consensus 228 g~~~~A~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~-~~~~~~~~l~~~~~~~ 297 (541)
|++++|...+++.... +-.| ...++..+...+...|+++.|...+..+.+... + ....++..+...|...
T Consensus 61 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 140 (406)
T 3sf4_A 61 HDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAK 140 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHc
Confidence 5555555544443321 1011 122334444445555555555555544433210 0 1133566666677777
Q ss_pred CC--------------------HHHHHHHHHccCC-----C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-C
Q 048358 298 GC--------------------INQASQLFDQMVE-----R----DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKV-P 347 (541)
Q Consensus 298 g~--------------------~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~ 347 (541)
|+ +++|...+.+..+ . ...++..+...|...|++++|...+++..+... .
T Consensus 141 g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 220 (406)
T 3sf4_A 141 GKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 220 (406)
T ss_dssp HHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT
T ss_pred CCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc
Confidence 77 7777766665422 1 234677788888888999999988888765310 1
Q ss_pred CC----HHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCc----HhHHHHHHHHHHhcCCHHHHHHHHHhC-C---CC
Q 048358 348 PN----DITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHK----IEHYGCLVDLLGRAGRLDQALNIIEEM-P---MK 415 (541)
Q Consensus 348 p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~ 415 (541)
++ ..++..+...+...|++++|...+++......-.++ ..++..+...|...|++++|.+.+++. . ..
T Consensus 221 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 300 (406)
T 3sf4_A 221 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 300 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc
Confidence 11 236778888899999999999999887653211111 556788899999999999999998876 1 11
Q ss_pred CC----HHHHHHHHHHHhhcCCHHHHHHHHHHHhccC------CCCcchHHHHHHHHHhcCCHH
Q 048358 416 PD----AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLE------PEDTGNYVLLSNIYAKHGRWE 469 (541)
Q Consensus 416 p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~ 469 (541)
++ ..++..+...+...|++++|...++++++.. +....++..++.++...|+..
T Consensus 301 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 301 NDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 22 5677788888999999999999999998763 223557888888888888763
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-13 Score=130.38 Aligned_cols=269 Identities=11% Similarity=0.022 Sum_probs=207.9
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCcc---HhHHHHHHHHHHhcCCHHHHHHHHHccCC-----C----ChhHH
Q 048358 251 SIVSVLPACAQLGSLELGEWIHMYCDKNHLLRR---TVICNALIEMYIKCGCINQASQLFDQMVE-----R----DVVSW 318 (541)
Q Consensus 251 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~ 318 (541)
.+......+...|+++.|...++.+.+...... ..++..+...|...|++++|...+++..+ + ...++
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 344455678899999999999999998753321 46788899999999999999999987632 1 24578
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhccCc--------------------HHHHHHHH
Q 048358 319 STVIGGLANHGKAHKAIHLFHEMQRLKV-PPN----DITFIGLLSACAHTGF--------------------WNEGLMYF 373 (541)
Q Consensus 319 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~--------------------~~~a~~~~ 373 (541)
..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|...+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 8889999999999999999998765310 112 3377788888999999 99999999
Q ss_pred HHhhhhc---C-CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHhhcCCHHHHHHHH
Q 048358 374 DSMKRDH---H-IEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PM---KPD----AKIWGSLLSSCRTYSNLEIAVIAM 441 (541)
Q Consensus 374 ~~~~~~~---~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~~~~~~~a~~~~ 441 (541)
++..... + .+.....+..+...+...|++++|.+.+++. .. .++ ..++..+...+...|++++|...+
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 246 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 246 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8775421 1 1122456788899999999999999999886 11 122 347788888899999999999999
Q ss_pred HHHhccCCCC------cchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHH
Q 048358 442 EHLLVLEPED------TGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIF 515 (541)
Q Consensus 442 ~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 515 (541)
+++++..+.. ..++..++.+|...|++++|...+++........ ...+....++
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~--------------------~~~~~~~~~~ 306 (338)
T 3ro2_A 247 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--------------------KDRIGEGRAC 306 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--------------------TCHHHHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--------------------CCcHHHHHHH
Confidence 9998765443 5688899999999999999999999886542110 0123446678
Q ss_pred HHHHHHHHHHhcccCCcccccccC
Q 048358 516 WLLELLALHQDRAKDVIDIMYEDI 539 (541)
Q Consensus 516 ~~l~~~~~~~~~~~~a~~~~~~~i 539 (541)
..++.+|..+|+.++|.+.+++++
T Consensus 307 ~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 307 WSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHHHHHH
Confidence 999999999999999999888765
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.49 E-value=2.7e-11 Score=112.53 Aligned_cols=218 Identities=9% Similarity=0.053 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHCCCCCChHHHHHHHHHHH-------ccCCh-------HHHHHHHHHHHHhCCCccHhHHHHHHHHHHh
Q 048358 231 AEALDVFRQMQMVGIEPDEISIVSVLPACA-------QLGSL-------ELGEWIHMYCDKNHLLRRTVICNALIEMYIK 296 (541)
Q Consensus 231 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 296 (541)
++|...|++.+... +-+...|..+...+. ..|+. ++|..+|+.+.+.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56666777766542 334444544444443 23554 6666666666653223345566666777777
Q ss_pred cCCHHHHHHHHHccCC--C-Chh-HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-hccCcHHHHHH
Q 048358 297 CGCINQASQLFDQMVE--R-DVV-SWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSAC-AHTGFWNEGLM 371 (541)
Q Consensus 297 ~g~~~~A~~~~~~~~~--~-~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~g~~~~a~~ 371 (541)
.|++++|..+|+++.+ | +.. +|..++..+.+.|++++|..+|++..+.. +++...|...+... ...|+++.|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777766633 2 232 56666666666777777777777776654 33444443333222 12567777777
Q ss_pred HHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHhhcCCHHHHHHHHHHHh
Q 048358 372 YFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-P---MKP--DAKIWGSLLSSCRTYSNLEIAVIAMEHLL 445 (541)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 445 (541)
+|+...+.. +.+...|..++..+.+.|++++|..+|++. . ..| ....|..++......|+.+.|..+++++.
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777666542 345566666666666777777777777665 2 233 24566666666666677777777777777
Q ss_pred ccCCCCc
Q 048358 446 VLEPEDT 452 (541)
Q Consensus 446 ~~~~~~~ 452 (541)
+..|++.
T Consensus 269 ~~~p~~~ 275 (308)
T 2ond_A 269 TAFREEY 275 (308)
T ss_dssp HHTTTTT
T ss_pred HHccccc
Confidence 6666644
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.47 E-value=2e-12 Score=124.36 Aligned_cols=221 Identities=10% Similarity=0.017 Sum_probs=139.3
Q ss_pred HHccCChHHHHHHHHHHHHh----CCCc-cHhHHHHHHHHHHhcCCHHHHHHHHHccCC-----C-----ChhHHHHHHH
Q 048358 259 CAQLGSLELGEWIHMYCDKN----HLLR-RTVICNALIEMYIKCGCINQASQLFDQMVE-----R-----DVVSWSTVIG 323 (541)
Q Consensus 259 ~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~-----~~~~~~~l~~ 323 (541)
+...|+++.|...+..+.+. +-++ ...++..+...|...|++++|...+.+..+ + ...+++.+..
T Consensus 113 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 192 (383)
T 3ulq_A 113 ELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFAT 192 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 44455555555555555442 1111 234566666677777777766666665521 1 1235667777
Q ss_pred HHHhcCChHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHhhhh---cCC-CCcHhHHHHHHH
Q 048358 324 GLANHGKAHKAIHLFHEMQRLKV-PPN----DITFIGLLSACAHTGFWNEGLMYFDSMKRD---HHI-EHKIEHYGCLVD 394 (541)
Q Consensus 324 ~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~-~~~~~~~~~l~~ 394 (541)
.|...|++++|...|++..+..- .++ ..++..+..+|...|++++|+..+++..+. .+. +....++..+..
T Consensus 193 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 272 (383)
T 3ulq_A 193 NFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQ 272 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence 77777888888877777654210 011 136677777788888888888888777651 112 334566777888
Q ss_pred HHHhcCCHHHHHHHHHhC-CC-----CCC-HHHHHHHHHHHhhcCC---HHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 048358 395 LLGRAGRLDQALNIIEEM-PM-----KPD-AKIWGSLLSSCRTYSN---LEIAVIAMEHLLVLEPEDTGNYVLLSNIYAK 464 (541)
Q Consensus 395 ~~~~~g~~~~A~~~~~~~-~~-----~p~-~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 464 (541)
.|.+.|++++|.+.+++. .+ .|. ...+..+...+...|+ +++|+..+++. ...|.....+..++.+|..
T Consensus 273 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~ 351 (383)
T 3ulq_A 273 IHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHE 351 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHH
Confidence 888888888888887775 11 121 2334556666777777 77777777765 2224445577788888888
Q ss_pred cCCHHHHHHHHHHhhh
Q 048358 465 HGRWEDVSRMRKLIRS 480 (541)
Q Consensus 465 ~g~~~~A~~~~~~m~~ 480 (541)
.|++++|...+++..+
T Consensus 352 ~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 352 RKNFQKASAYFLKVEQ 367 (383)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 8888888888888764
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.5e-12 Score=113.78 Aligned_cols=206 Identities=10% Similarity=-0.025 Sum_probs=126.0
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHccCC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048358 283 RTVICNALIEMYIKCGCINQASQLFDQMVE----RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLS 358 (541)
Q Consensus 283 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 358 (541)
++..+......+...|++++|...|++..+ ++...+..+..++...|++++|+..|++..+.. +.+...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 445666666677777777777777766522 455555556666667777777777777766654 334556666666
Q ss_pred HHhccCcHHHHHHHHHHhhhhcCCCCcH-------hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHH
Q 048358 359 ACAHTGFWNEGLMYFDSMKRDHHIEHKI-------EHYGCLVDLLGRAGRLDQALNIIEEM-PMKPD---AKIWGSLLSS 427 (541)
Q Consensus 359 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~ 427 (541)
++...|++++|+..+++..+.. +.+. ..|..+...+...|++++|++.|++. ...|+ ...+..+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 6777777777777777666542 2333 34555666666666666666666665 44554 2444445444
Q ss_pred HhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCC
Q 048358 428 CRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDT 507 (541)
Q Consensus 428 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (541)
+.. .+...++++..+.+.++..+... .....+.+++|...+++..+ +
T Consensus 163 ~~~-----~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~--------------------------l 209 (228)
T 4i17_A 163 FYN-----NGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVT--------------------------L 209 (228)
T ss_dssp HHH-----HHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHH--------------------------H
T ss_pred HHH-----HHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhh--------------------------c
Confidence 433 23344555555555544333322 23344556999999988866 4
Q ss_pred CCChhHHHHHHHHHHHH
Q 048358 508 KPFLKDIFWLLELLALH 524 (541)
Q Consensus 508 ~p~~~~~~~~l~~~~~~ 524 (541)
+|++..+...|+.+...
T Consensus 210 ~p~~~~~~~~l~~i~~~ 226 (228)
T 4i17_A 210 SPNRTEIKQMQDQVKAM 226 (228)
T ss_dssp CTTCHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 68888888888877643
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.6e-12 Score=125.09 Aligned_cols=224 Identities=5% Similarity=-0.081 Sum_probs=176.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHccCC-----C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CC-----CHHHH
Q 048358 289 ALIEMYIKCGCINQASQLFDQMVE-----R----DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKV-PP-----NDITF 353 (541)
Q Consensus 289 ~l~~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p-----~~~~~ 353 (541)
.....+...|++++|...|++..+ + ...++..+...|...|++++|...+++..+.-- .+ ...++
T Consensus 108 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 187 (383)
T 3ulq_A 108 FRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCH 187 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 367778899999999999998744 2 235788899999999999999999998765310 11 23577
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhhhhcCCCC----cHhHHHHHHHHHHhcCCHHHHHHHHHhC-C-----CC-C-CHHHH
Q 048358 354 IGLLSACAHTGFWNEGLMYFDSMKRDHHIEH----KIEHYGCLVDLLGRAGRLDQALNIIEEM-P-----MK-P-DAKIW 421 (541)
Q Consensus 354 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-----~~-p-~~~~~ 421 (541)
..+..+|...|++++|...|++..+...-.+ ...++..+...|...|++++|.+.+++. . .. | ...++
T Consensus 188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 267 (383)
T 3ulq_A 188 SLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAY 267 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence 8888999999999999999998875321111 1247888999999999999999998876 2 22 4 35678
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHhccC-----CCCcchHHHHHHHHHhcCC---HHHHHHHHHHhhhCCCccCCceeEEE
Q 048358 422 GSLLSSCRTYSNLEIAVIAMEHLLVLE-----PEDTGNYVLLSNIYAKHGR---WEDVSRMRKLIRSKSMKKTPGCSLIE 493 (541)
Q Consensus 422 ~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~~~~~~~~~~~~~ 493 (541)
..+...+...|++++|...++++++.. |.....+..++..|...|+ +++|..++++. +
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~----------- 333 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---M----------- 333 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---T-----------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---c-----------
Confidence 888899999999999999999999763 3333346778999999999 77777777765 1
Q ss_pred EcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCcccccccC
Q 048358 494 VNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMYEDI 539 (541)
Q Consensus 494 ~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~i 539 (541)
..|....++..|+.+|..+|+.++|.+.+++++
T Consensus 334 -------------~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 334 -------------LYADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -------------CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 245667889999999999999999999887764
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=4.2e-13 Score=137.72 Aligned_cols=163 Identities=19% Similarity=0.226 Sum_probs=113.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHH
Q 048358 315 VVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVD 394 (541)
Q Consensus 315 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 394 (541)
..+|+.|...|...|++++|+..|++.++.. +-+..++..+..+|.+.|++++|++.|++..+.. +.+...|..+..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 4567777777777777777777777777654 4445667777777777777777777777776642 445666777777
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHH
Q 048358 395 LLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVS 472 (541)
Q Consensus 395 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 472 (541)
+|...|++++|++.|++. .+.| +...|..+..++...|++++|+..|+++++++|+++.++..++.+|...|++++|.
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence 777777777777777766 4445 45667777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHhhh
Q 048358 473 RMRKLIRS 480 (541)
Q Consensus 473 ~~~~~m~~ 480 (541)
+.+++..+
T Consensus 166 ~~~~kal~ 173 (723)
T 4gyw_A 166 ERMKKLVS 173 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.4e-12 Score=133.93 Aligned_cols=167 Identities=14% Similarity=0.166 Sum_probs=149.4
Q ss_pred CccHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048358 281 LRRTVICNALIEMYIKCGCINQASQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLL 357 (541)
Q Consensus 281 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 357 (541)
+.+..+++.|..+|.+.|++++|.+.|++..+ .+..+|+.+..+|.+.|++++|+..|++.++.. +-+...|..+.
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg 84 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG 84 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 34577899999999999999999999998844 367899999999999999999999999999875 55678999999
Q ss_pred HHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHH
Q 048358 358 SACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLE 435 (541)
Q Consensus 358 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~ 435 (541)
.++...|++++|++.|++..+.. +.+...|..+..+|...|++++|++.|++. .+.| +...+..+..++...|+++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~--P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQIN--PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 99999999999999999998853 556888999999999999999999999987 6667 5788999999999999999
Q ss_pred HHHHHHHHHhccCCC
Q 048358 436 IAVIAMEHLLVLEPE 450 (541)
Q Consensus 436 ~a~~~~~~~~~~~~~ 450 (541)
+|.+.+++++++.|+
T Consensus 163 ~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 163 DYDERMKKLVSIVAD 177 (723)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChh
Confidence 999999999987654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.6e-13 Score=126.28 Aligned_cols=235 Identities=13% Similarity=0.096 Sum_probs=122.2
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHC-------CCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHh------CC-
Q 048358 215 VSWTAMISGYTHIGSYAEALDVFRQMQMV-------GIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKN------HL- 280 (541)
Q Consensus 215 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~- 280 (541)
.++..+...+...|++++|..+|+++.+. ..+.....+..+...+...|+++.|...++.+.+. +.
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 56777888888888888888888887753 11222334455555556666666666666555443 11
Q ss_pred CccHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC------CC-CCCHHHH
Q 048358 281 LRRTVICNALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRL------KV-PPNDITF 353 (541)
Q Consensus 281 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~-~p~~~~~ 353 (541)
+....++..+... |...|++++|...++++.+. +- +.....+
T Consensus 108 ~~~~~~~~~l~~~-------------------------------~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 156 (311)
T 3nf1_A 108 PAVAATLNNLAVL-------------------------------YGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQL 156 (311)
T ss_dssp HHHHHHHHHHHHH-------------------------------HHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHH-------------------------------HHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 1123334444444 44445555555444444332 11 1122344
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhhhh------cCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-C---------CCCC
Q 048358 354 IGLLSACAHTGFWNEGLMYFDSMKRD------HHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-P---------MKPD 417 (541)
Q Consensus 354 ~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---------~~p~ 417 (541)
..+...+...|++++|..+++++... ...+....++..+...|...|++++|.+.++++ . ..+.
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 236 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE 236 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 55555556666666666666555442 001122344555666666666666666665554 1 0111
Q ss_pred -------HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048358 418 -------AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 418 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 480 (541)
...+..+...+...+.+.++...+++.....|..+.++..++.+|.+.|++++|.+.+++..+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 237 NKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 111222223344455566666677777777777778888888888888888888888887654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.44 E-value=3.7e-12 Score=118.32 Aligned_cols=245 Identities=10% Similarity=0.049 Sum_probs=186.1
Q ss_pred HHHHHHHHHHHHhCCCccHhHHHHHHHHHH-------hcCCH-------HHHHHHHHccCC---C-ChhHHHHHHHHHHh
Q 048358 266 ELGEWIHMYCDKNHLLRRTVICNALIEMYI-------KCGCI-------NQASQLFDQMVE---R-DVVSWSTVIGGLAN 327 (541)
Q Consensus 266 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~l~~~~~~ 327 (541)
+.|...|+.+.+.. +.++..|..++..+. +.|++ ++|..+|++..+ | +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67778888888764 556778888888776 35886 899999998754 3 55689999999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCC-HH-HHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHH-hcCCHHH
Q 048358 328 HGKAHKAIHLFHEMQRLKVPPN-DI-TFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLG-RAGRLDQ 404 (541)
Q Consensus 328 ~~~~~~a~~~~~~m~~~~~~p~-~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~ 404 (541)
.|++++|..+|+++.+. .|+ .. .|..++..+.+.|++++|..+|++..+.. +++...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999985 454 33 78899999999999999999999998742 445555554444322 3799999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhcc---CCC-CcchHHHHHHHHHhcCCHHHHHHHHHHh
Q 048358 405 ALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVL---EPE-DTGNYVLLSNIYAKHGRWEDVSRMRKLI 478 (541)
Q Consensus 405 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m 478 (541)
|.++|++. ...| +...|..++..+.+.|++++|..+|+++++. .|+ ....|..++..+.+.|+.++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999988 3334 6788999999999999999999999999986 343 5678999999999999999999999998
Q ss_pred hhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHH
Q 048358 479 RSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLE 519 (541)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~ 519 (541)
.+........... ........-..++|+++..+..||
T Consensus 268 ~~~~p~~~~~~~~----~~~~~r~~~l~~~P~~~~~ln~lg 304 (308)
T 2ond_A 268 FTAFREEYEGKET----ALLVDRYKFMDLYPCSASELKALG 304 (308)
T ss_dssp HHHTTTTTSSCHH----HHHHTTTCBTTBCSSCHHHHHTTT
T ss_pred HHHcccccccchH----HHHHHHHHhcccCCCCHHHHHhcC
Confidence 8765432211100 000011122257888888776554
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.43 E-value=8.1e-12 Score=106.22 Aligned_cols=161 Identities=14% Similarity=0.096 Sum_probs=105.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHH
Q 048358 318 WSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLG 397 (541)
Q Consensus 318 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 397 (541)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA--PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHH
Confidence 3444445555555555555555554432 3344555555666666666666666666665532 344555666666666
Q ss_pred hcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 048358 398 RAGRLDQALNIIEEM-PMK-PDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMR 475 (541)
Q Consensus 398 ~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 475 (541)
..|++++|.+.++++ ... .+...+..+...+...|++++|...++++++..|.++..+..++.++...|++++|...+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 667777777666665 222 355667777777778888888888888888888888888888888888888888888888
Q ss_pred HHhhhC
Q 048358 476 KLIRSK 481 (541)
Q Consensus 476 ~~m~~~ 481 (541)
+++.+.
T Consensus 168 ~~~~~~ 173 (186)
T 3as5_A 168 KKANEL 173 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 877654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.8e-13 Score=127.33 Aligned_cols=237 Identities=14% Similarity=0.104 Sum_probs=125.9
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHccCC--------C---ChhHHHHHHHHHHhcCChHHHHHHHHHHHhC------C
Q 048358 283 RTVICNALIEMYIKCGCINQASQLFDQMVE--------R---DVVSWSTVIGGLANHGKAHKAIHLFHEMQRL------K 345 (541)
Q Consensus 283 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~ 345 (541)
+..++..+...|...|++++|..+|+++.+ . ...++..+...|...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 355666677777777777777777766533 1 2335556666666667777777766666542 1
Q ss_pred C-CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhc-----C-CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CC---
Q 048358 346 V-PPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDH-----H-IEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PM--- 414 (541)
Q Consensus 346 ~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~--- 414 (541)
- +....++..+...+...|++++|...++++.+.. + .+.....+..+...+...|++++|.++++++ ..
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 1223455566666666666666666666665421 1 1222344555556666666666666655554 11
Q ss_pred -----CC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhcc---------CCCCcchHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048358 415 -----KP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVL---------EPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIR 479 (541)
Q Consensus 415 -----~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 479 (541)
.| ...++..+...+...|++++|...++++++. .+.....+..+...+...+....+.
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 258 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGT------- 258 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------C-------
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHH-------
Confidence 22 1234455555556666666666666665542 1222222222222222111111100
Q ss_pred hCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCcccccccC
Q 048358 480 SKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMYEDI 539 (541)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~i 539 (541)
........+......+|....++..++.+|..+|+.++|.+.+++++
T Consensus 259 -------------~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 305 (311)
T 3nf1_A 259 -------------SFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAM 305 (311)
T ss_dssp -------------CSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 01111222223334689999999999999999999999999988765
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.40 E-value=9.1e-10 Score=111.73 Aligned_cols=401 Identities=9% Similarity=0.019 Sum_probs=275.6
Q ss_pred CCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCC---chHHHHHHHHHHHhCC-CC
Q 048358 75 PNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLC---PSLGKQIHAHVCKFGL-KS 150 (541)
Q Consensus 75 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~g~-~~ 150 (541)
.|..+|..++..+.+.+.++.+..+|+++...- |.....|..-+..-.+.++ .+.+..+|+..+...+ +|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f------P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~ 137 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF------PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNN 137 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCC
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCC
Confidence 578899999999999999999999999999874 6667788888888888888 9999999999988642 47
Q ss_pred chhhHHHHHHHHHcCCCh--------HHHHHHHhhcC------CC-ChhhHHHHHHHHH---------hcCCHHHHHHHH
Q 048358 151 HSITENALLDLYGKCDEL--------IEAHKVFEEMT------DR-DIVAWNNLISGYA---------RLGQMKKARMLF 206 (541)
Q Consensus 151 ~~~~~~~l~~~~~~~g~~--------~~A~~~~~~~~------~~-~~~~~~~l~~~~~---------~~~~~~~A~~~~ 206 (541)
+...|...+....+.++. +...++|+... .+ +...|...+.... ..++++.+.++|
T Consensus 138 sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy 217 (679)
T 4e6h_A 138 DLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLY 217 (679)
T ss_dssp CHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHH
Confidence 888888877766655543 33446676532 23 3457777776543 344578899999
Q ss_pred hcCCCCCc----chHH---HHHHHHH----------hcCChHHHHHHHHHHHHC--CCC---------------C-----
Q 048358 207 DKMPYTTI----VSWT---AMISGYT----------HIGSYAEALDVFRQMQMV--GIE---------------P----- 247 (541)
Q Consensus 207 ~~~~~~~~----~~~~---~l~~~~~----------~~g~~~~A~~~~~~m~~~--~~~---------------p----- 247 (541)
++...... .+|. .+..... ...+++.|...+.++... ++. |
T Consensus 218 ~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~ 297 (679)
T 4e6h_A 218 KTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEY 297 (679)
T ss_dssp HHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCC
T ss_pred HHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchh
Confidence 88764211 2222 2222110 011234445555443221 111 1
Q ss_pred Ch---HHHHHHHHHHHccC-------ChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHH-HHHHccCC---C
Q 048358 248 DE---ISIVSVLPACAQLG-------SLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQAS-QLFDQMVE---R 313 (541)
Q Consensus 248 ~~---~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~---~ 313 (541)
+. ..|...+.---..+ ..+.+..+|++++... +....+|...+..+...|+.++|. .+|+.... .
T Consensus 298 ~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~ 376 (679)
T 4e6h_A 298 DVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPN 376 (679)
T ss_dssp CHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCC
Confidence 00 12333332222221 1234556788777753 456888998999999999999996 99988743 3
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC---------CCCC------------HHHHHHHHHHHhccCcHHHHHHH
Q 048358 314 DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLK---------VPPN------------DITFIGLLSACAHTGFWNEGLMY 372 (541)
Q Consensus 314 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---------~~p~------------~~~~~~l~~~~~~~g~~~~a~~~ 372 (541)
+...|-..+...-..|+++.|..+|+++.... -.|+ ...|...+....+.|+.+.|..+
T Consensus 377 s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~v 456 (679)
T 4e6h_A 377 SAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKI 456 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55567778888889999999999999987631 0132 23577777777788999999999
Q ss_pred HHHhhhhcCCCCcHhHHHHHHHHHHhc-CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCC
Q 048358 373 FDSMKRDHHIEHKIEHYGCLVDLLGRA-GRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEP 449 (541)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 449 (541)
|..+.+.. .......|...+..-.+. ++.+.|.++|+.. ..-| +...|...+......|+.+.|..+|+++++..|
T Consensus 457 f~~A~~~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 457 FGKCRRLK-KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HHHHHHTG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred HHHHHHhc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 99998741 112334454444444454 4589999999987 2233 566677788878889999999999999999877
Q ss_pred C---CcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 048358 450 E---DTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSM 483 (541)
Q Consensus 450 ~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 483 (541)
+ ....|..++..-.+.|+.+.+..+.+++.+.-.
T Consensus 536 ~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 536 DSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp STTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3 456888888888899999999999999987643
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.40 E-value=2e-11 Score=107.92 Aligned_cols=206 Identities=11% Similarity=0.035 Sum_probs=163.2
Q ss_pred CChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC--C-ChhHHHHHHH
Q 048358 247 PDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE--R-DVVSWSTVIG 323 (541)
Q Consensus 247 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~ 323 (541)
.|...+......+...|++++|...|..+.+...+++...+..+..++...|++++|...|++..+ | +..+|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 456788888889999999999999999999988657777787899999999999999999998844 3 4568889999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCC--cHhHHHHHHH
Q 048358 324 GLANHGKAHKAIHLFHEMQRLKVPPND-------ITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEH--KIEHYGCLVD 394 (541)
Q Consensus 324 ~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~ 394 (541)
+|...|++++|+..|++..+.. +.+. ..|..+...+...|++++|+..|+++.+.. +. +...|..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT--SKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS--CHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC--CCcccHHHHHHHHH
Confidence 9999999999999999998864 4445 457788888999999999999999998742 33 4677888888
Q ss_pred HHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 048358 395 LLGRAGRLDQALNIIEEM-PM-KPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIY 462 (541)
Q Consensus 395 ~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 462 (541)
.|...|+. .++++ .+ ..+...+.... ....+.+++|+..++++++++|+++.+...+..+.
T Consensus 162 ~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 162 LFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 88766643 23332 11 12344444433 34567799999999999999999988887776654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.39 E-value=2.5e-10 Score=109.16 Aligned_cols=261 Identities=12% Similarity=-0.027 Sum_probs=161.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChH----HHHHHHHHHHccCChHHHHHHHHHHHHhCCC---c--cHhHHHHH
Q 048358 220 MISGYTHIGSYAEALDVFRQMQMVGIEPDEI----SIVSVLPACAQLGSLELGEWIHMYCDKNHLL---R--RTVICNAL 290 (541)
Q Consensus 220 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~l 290 (541)
....+...|++++|...+++.....-..+.. .+..+...+...|+++.|...+......... + ...++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3445556677777777777766543111211 3344445566677777777777666542111 1 12235566
Q ss_pred HHHHHhcCCHHHHHHHHHccCC----------C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--C--CHHHHHH
Q 048358 291 IEMYIKCGCINQASQLFDQMVE----------R-DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVP--P--NDITFIG 355 (541)
Q Consensus 291 ~~~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--p--~~~~~~~ 355 (541)
...+...|++++|...+++..+ + ...++..+...+...|++++|...+++.....-. + ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 7777778888888777766522 1 1234556677778888888888888877653211 1 2245666
Q ss_pred HHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHH-----HHHHHHHhcCCHHHHHHHHHhC-CCCCC-----HHHHHHH
Q 048358 356 LLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYG-----CLVDLLGRAGRLDQALNIIEEM-PMKPD-----AKIWGSL 424 (541)
Q Consensus 356 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l 424 (541)
+...+...|++++|...++..............+. ..+..+...|++++|...+++. ...|. ...+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 77778888888888888887764311111111111 2334467888888888888877 22221 2345666
Q ss_pred HHHHhhcCCHHHHHHHHHHHhccCCC------CcchHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048358 425 LSSCRTYSNLEIAVIAMEHLLVLEPE------DTGNYVLLSNIYAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 425 ~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 480 (541)
...+...|++++|...++++.+..+. ....+..++.++...|++++|...+++...
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 67788888888888888887764322 123666778888888888888888887654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.38 E-value=5.3e-11 Score=114.10 Aligned_cols=195 Identities=12% Similarity=0.074 Sum_probs=121.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHccCC-----C-----ChhHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-C
Q 048358 285 VICNALIEMYIKCGCINQASQLFDQMVE-----R-----DVVSWSTVIGGLANHGKAHKAIHLFHEMQRL----KVPP-N 349 (541)
Q Consensus 285 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~ 349 (541)
.++..+...|...|+++.|...+.+..+ + ...+++.+...|...|++++|.+.|++..+. +-++ .
T Consensus 142 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 221 (378)
T 3q15_A 142 EFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFI 221 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 3555566666666666666665555421 1 1235666777777777777777777766542 1111 1
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhh---cCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC----CC--CCC-HH
Q 048358 350 DITFIGLLSACAHTGFWNEGLMYFDSMKRD---HHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM----PM--KPD-AK 419 (541)
Q Consensus 350 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~--~p~-~~ 419 (541)
..++..+..+|...|++++|+..+++.... .+.+....++..+...|.+.|++++|...+++. .. .|. ..
T Consensus 222 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 301 (378)
T 3q15_A 222 AISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKE 301 (378)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 235666777777778888888877777651 012333566777777888888888888877765 11 222 23
Q ss_pred HHHHHHHHHhhcCC---HHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048358 420 IWGSLLSSCRTYSN---LEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 420 ~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 480 (541)
.+..+...+...++ +++|+..+++.. ..|.....+..++..|...|++++|...+++..+
T Consensus 302 ~~~~l~~ly~~~~~~~~~~~al~~~~~~~-~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 302 LFLFLQAVYKETVDERKIHDLLSYFEKKN-LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHSSSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHhCC-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44445555666777 677777766621 1233445677788888888888888888877654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.37 E-value=5.2e-11 Score=107.66 Aligned_cols=217 Identities=9% Similarity=-0.017 Sum_probs=141.2
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHccCC--C-C---hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCCHHHHH
Q 048358 283 RTVICNALIEMYIKCGCINQASQLFDQMVE--R-D---VVSWSTVIGGLANHGKAHKAIHLFHEMQRLKV--PPNDITFI 354 (541)
Q Consensus 283 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~ 354 (541)
+...+..+...+.+.|++++|...|+++.+ | + ...+..+..+|...|++++|+..|++..+... +.....+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 445555666666777777777777766643 2 2 34566666666777777777777776666420 11133455
Q ss_pred HHHHHHhc--------cCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048358 355 GLLSACAH--------TGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKPDAKIWGSLLS 426 (541)
Q Consensus 355 ~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~ 426 (541)
.+..++.. .|++++|+..|+++.+.. |.+......+.......++. ...+..+..
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la~ 156 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKL---------------ARKQYEAAR 156 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHH---------------HHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHH---------------HHHHHHHHH
Confidence 55566665 667777777777666542 22222222211111100000 112456777
Q ss_pred HHhhcCCHHHHHHHHHHHhccCCCC---cchHHHHHHHHHhc----------CCHHHHHHHHHHhhhCCCccCCceeEEE
Q 048358 427 SCRTYSNLEIAVIAMEHLLVLEPED---TGNYVLLSNIYAKH----------GRWEDVSRMRKLIRSKSMKKTPGCSLIE 493 (541)
Q Consensus 427 ~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 493 (541)
.+...|++++|+..|+++++..|++ +..+..++.+|... |++++|...++++.+...
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p---------- 226 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP---------- 226 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT----------
T ss_pred HHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC----------
Confidence 8999999999999999999999884 45889999999877 999999999999876432
Q ss_pred EcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCcccccccC
Q 048358 494 VNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMYEDI 539 (541)
Q Consensus 494 ~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~i 539 (541)
.+|....+...++.++..+++.+++.....+..
T Consensus 227 -------------~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 259 (261)
T 3qky_A 227 -------------DSPLLRTAEELYTRARQRLTELEGDASLAQGQR 259 (261)
T ss_dssp -------------TCTHHHHHHHHHHHHHHHHHHHHTCTTCCCCGG
T ss_pred -------------CChHHHHHHHHHHHHHHHHHHhhhhhHHhhhcc
Confidence 234446778899999999999988877665433
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.35 E-value=7.1e-11 Score=100.29 Aligned_cols=168 Identities=15% Similarity=0.093 Sum_probs=145.5
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048358 284 TVICNALIEMYIKCGCINQASQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSAC 360 (541)
Q Consensus 284 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 360 (541)
...+..+...+...|++++|...++++.+ .+..++..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 45677788899999999999999999865 366788889999999999999999999998875 56778888999999
Q ss_pred hccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHH
Q 048358 361 AHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAV 438 (541)
Q Consensus 361 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~ 438 (541)
...|++++|.+.++.+.+.. +.+...+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN--PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC--cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998753 567788899999999999999999999987 3334 6788889999999999999999
Q ss_pred HHHHHHhccCCCCcch
Q 048358 439 IAMEHLLVLEPEDTGN 454 (541)
Q Consensus 439 ~~~~~~~~~~~~~~~~ 454 (541)
..++++++..|+++..
T Consensus 165 ~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 165 PHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHcCCCchhh
Confidence 9999999988876543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=3.1e-12 Score=104.67 Aligned_cols=144 Identities=15% Similarity=0.019 Sum_probs=116.2
Q ss_pred HHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCC
Q 048358 356 LLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSN 433 (541)
Q Consensus 356 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~ 433 (541)
|...+...|++++|+..++..... .+.+...+..+...|.+.|++++|++.|++. .+.| +..+|..+..++...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 445566778899999988887753 2334556677889999999999999999887 5556 57888889899999999
Q ss_pred HHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHH-HHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChh
Q 048358 434 LEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRM-RKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLK 512 (541)
Q Consensus 434 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 512 (541)
+++|+..|+++++++|.++.++..++.+|.+.|++++|.+. +++..+ ++|+++
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~--------------------------l~P~~~ 134 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK--------------------------LFPGSP 134 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH--------------------------HSTTCH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--------------------------hCcCCH
Confidence 99999999999999999999999999999999998876654 576654 478999
Q ss_pred HHHHHHHHHHHHHhc
Q 048358 513 DIFWLLELLALHQDR 527 (541)
Q Consensus 513 ~~~~~l~~~~~~~~~ 527 (541)
.++...+.++...|+
T Consensus 135 ~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 135 AVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCc
Confidence 999999999888775
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.32 E-value=1.6e-12 Score=118.97 Aligned_cols=190 Identities=14% Similarity=0.122 Sum_probs=96.8
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhh------cCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CC--------C
Q 048358 351 ITFIGLLSACAHTGFWNEGLMYFDSMKRD------HHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PM--------K 415 (541)
Q Consensus 351 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~--------~ 415 (541)
.++..+...|...|++++|...++++.+. ...+....++..+...|...|++++|.+.+++. .. .
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34444444455555555555555444432 001122334445555555555555555555443 11 1
Q ss_pred C-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhcc--------CCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCC----
Q 048358 416 P-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVL--------EPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKS---- 482 (541)
Q Consensus 416 p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~---- 482 (541)
| ...++..+...+...|++++|+..++++++. .|....++..++.+|...|++++|...++++.+..
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 203 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE 203 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 2 2344455555555556666666665555554 33334455556666666666666666655554320
Q ss_pred ---CccCCceeE----------------EEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCcccccccCC
Q 048358 483 ---MKKTPGCSL----------------IEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMYEDIG 540 (541)
Q Consensus 483 ---~~~~~~~~~----------------~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~i~ 540 (541)
..+.....| .........+......+|....++..|+.+|..+|+.++|...++++++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 204 FGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp SSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 000000000 0011111112222246788889999999999999999999999988764
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.31 E-value=5.6e-11 Score=113.91 Aligned_cols=226 Identities=7% Similarity=-0.030 Sum_probs=173.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHccCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHhC----CC-CC-CHH
Q 048358 287 CNALIEMYIKCGCINQASQLFDQMVE-----RD----VVSWSTVIGGLANHGKAHKAIHLFHEMQRL----KV-PP-NDI 351 (541)
Q Consensus 287 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~-~p-~~~ 351 (541)
+......+...|++++|...|++..+ ++ ..++..+...|...|+++.|...+++..+. +- .+ ...
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 34456677889999999999988743 22 347888899999999999999999987652 10 11 245
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhhc---CCC-CcHhHHHHHHHHHHhcCCHHHHHHHHHhC-C-----CCCC-HHH
Q 048358 352 TFIGLLSACAHTGFWNEGLMYFDSMKRDH---HIE-HKIEHYGCLVDLLGRAGRLDQALNIIEEM-P-----MKPD-AKI 420 (541)
Q Consensus 352 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-----~~p~-~~~ 420 (541)
++..+..+|...|++++|.+.|++..+.. +.+ ....++..+...|...|++++|.+.+++. . ..|. ..+
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 67788899999999999999998887531 111 12356788999999999999999999887 2 3343 567
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHhccCCC-----CcchHHHHHHHHHhcCC---HHHHHHHHHHhhhCCCccCCceeEE
Q 048358 421 WGSLLSSCRTYSNLEIAVIAMEHLLVLEPE-----DTGNYVLLSNIYAKHGR---WEDVSRMRKLIRSKSMKKTPGCSLI 492 (541)
Q Consensus 421 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~~~~~~~~~~~~ 492 (541)
+..+...+.+.|++++|...++++++..+. ....+..+...|...|+ +++|...+++. +
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~---------- 330 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---N---------- 330 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---T----------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---C----------
Confidence 788888899999999999999999986432 23356667777778888 77777777662 1
Q ss_pred EEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCcccccccC
Q 048358 493 EVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMYEDI 539 (541)
Q Consensus 493 ~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~i 539 (541)
..|+....+..|+.+|..+|+.++|.+.+++++
T Consensus 331 --------------~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 331 --------------LHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --------------ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 245667788999999999999999999888765
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=3.9e-11 Score=109.94 Aligned_cols=165 Identities=10% Similarity=0.014 Sum_probs=131.7
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 048358 347 PPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPDAKIWGSLL 425 (541)
Q Consensus 347 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 425 (541)
+.+...+..+...+...|++++|...|+++.+.. |.+...+..+...+.+.|++++|...++++ ...|+........
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 4455667777788888899999999999888753 556777888888999999999999999888 4567654433333
Q ss_pred H-HHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeC
Q 048358 426 S-SCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSG 504 (541)
Q Consensus 426 ~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (541)
. .+...++.+.|+..++++++.+|+++..+..++.+|...|++++|...++++...
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~----------------------- 248 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRX----------------------- 248 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc-----------------------
Confidence 3 3667778888899999999999999999999999999999999999999988763
Q ss_pred CCCCCCh--hHHHHHHHHHHHHHhcccCCcccccccC
Q 048358 505 DDTKPFL--KDIFWLLELLALHQDRAKDVIDIMYEDI 539 (541)
Q Consensus 505 ~~~~p~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~i 539 (541)
+|++ ..++..|+.++..+|+.++|+..+.+.+
T Consensus 249 ---~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 249 ---DLTAADGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp ---CTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ---ccccccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 4655 7888999999999999888887776543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.27 E-value=1.1e-09 Score=98.70 Aligned_cols=173 Identities=12% Similarity=-0.006 Sum_probs=90.3
Q ss_pred HHHHHHccCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 048358 303 ASQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKV-PPNDITFIGLLSACAHTGFWNEGLMYFDSMKR 378 (541)
Q Consensus 303 A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 378 (541)
|...|++... ++..++..+..++...|++++|++++.+.+..|- .-+...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4444544432 3334444555556666666666666666555431 12344555556666666666666666666654
Q ss_pred hcCCCC-----cHhHHHHHHHH--HHhcC--CHHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhcc-
Q 048358 379 DHHIEH-----KIEHYGCLVDL--LGRAG--RLDQALNIIEEM-PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVL- 447 (541)
Q Consensus 379 ~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 447 (541)
. .| +..+...++.+ ....| ++.+|..+|+++ ...|+..+-..++.++.+.|++++|...++.+.+.
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3 34 23333444433 22223 566666666666 33344222233333556666666666666655544
Q ss_pred ---------CCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048358 448 ---------EPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 448 ---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 480 (541)
+|.++.++..++.+....|+ +|.++++++.+
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 35566666555555555555 56666666554
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.26 E-value=6.7e-09 Score=99.20 Aligned_cols=266 Identities=9% Similarity=-0.071 Sum_probs=147.4
Q ss_pred HHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcc----cHHHHHHHHhccCCchHHHHHHHHHHHhCCC-Cc----hh
Q 048358 83 MIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKF----TLPFVIKSCAGLLCPSLGKQIHAHVCKFGLK-SH----SI 153 (541)
Q Consensus 83 ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~ 153 (541)
....+...|++++|...+++...... ..+.. ++..+...+...|+++.|...+++....... .+ ..
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELP-----PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCC-----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCC-----CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 34456678999999999988877531 12221 4555666777889999998888887764211 11 12
Q ss_pred hHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCCC----CcchHHHHHHHHHhcCC
Q 048358 154 TENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYT----TIVSWTAMISGYTHIGS 229 (541)
Q Consensus 154 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~g~ 229 (541)
++..+...+...|++++|...+++.. ++......+ ...++..+...+...|+
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al------------------------~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 150 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAF------------------------QLINEQHLEQLPMHEFLVRIRAQLLWAWAR 150 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH------------------------HHHHHTTCTTSTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH------------------------HHHHHhccccCcHHHHHHHHHHHHHHHhcC
Confidence 34556677778888888877766532 222222221 12345566777778888
Q ss_pred hHHHHHHHHHHHHCCCC--C--ChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccH-hHHH-----HHHHHHHhcCC
Q 048358 230 YAEALDVFRQMQMVGIE--P--DEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRT-VICN-----ALIEMYIKCGC 299 (541)
Q Consensus 230 ~~~A~~~~~~m~~~~~~--p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~g~ 299 (541)
+++|...+++.....-. + ...++..+...+...|+++.|...++........++. ..+. ..+..+...|+
T Consensus 151 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 230 (373)
T 1hz4_A 151 LDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGD 230 (373)
T ss_dssp HHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCC
Confidence 88888888877654211 1 1234555556666677777777776666543211110 1111 22233556677
Q ss_pred HHHHHHHHHccCCCCh-------hHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHhccCcHH
Q 048358 300 INQASQLFDQMVERDV-------VSWSTVIGGLANHGKAHKAIHLFHEMQRL----KVPPND-ITFIGLLSACAHTGFWN 367 (541)
Q Consensus 300 ~~~A~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~~-~~~~~l~~~~~~~g~~~ 367 (541)
+++|...+++...++. ..+..+...+...|++++|...+++.... |.+++. ..+..+..++...|+++
T Consensus 231 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 310 (373)
T 1hz4_A 231 KAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKS 310 (373)
T ss_dssp HHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHH
Confidence 7777766666644321 12344455555566666666655554321 111111 13333344444555555
Q ss_pred HHHHHHHHhh
Q 048358 368 EGLMYFDSMK 377 (541)
Q Consensus 368 ~a~~~~~~~~ 377 (541)
+|...++...
T Consensus 311 ~A~~~l~~al 320 (373)
T 1hz4_A 311 DAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.25 E-value=4.7e-11 Score=109.12 Aligned_cols=197 Identities=15% Similarity=0.153 Sum_probs=104.2
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHccCC--------C---ChhHHHHHHHHHHhcCChHHHHHHHHHHHhC------C-
Q 048358 284 TVICNALIEMYIKCGCINQASQLFDQMVE--------R---DVVSWSTVIGGLANHGKAHKAIHLFHEMQRL------K- 345 (541)
Q Consensus 284 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~- 345 (541)
..++..+...|...|++++|...++++.+ . ...++..+...|...|++++|...+++.... .
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 33444555555555555555555544421 0 2234555566666666666666666655442 1
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhh------cCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-C-----
Q 048358 346 VPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRD------HHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-P----- 413 (541)
Q Consensus 346 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~----- 413 (541)
.+....++..+...+...|++++|...++++.+. ...+....++..+...|...|++++|...+++. .
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 1223445666666677777777777777666543 001223455666777777777777777776655 1
Q ss_pred ----CCCC-HHHHHHHHHHHhh------cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048358 414 ----MKPD-AKIWGSLLSSCRT------YSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 414 ----~~p~-~~~~~~l~~~~~~------~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 480 (541)
..+. ...|..+...... ...+..+...++......|..+.++..++.+|...|++++|..++++..+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1221 1222222222222 22233444444433333455566788888888888888888888887764
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.22 E-value=6.9e-11 Score=99.70 Aligned_cols=162 Identities=10% Similarity=0.051 Sum_probs=116.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHH-Hh
Q 048358 352 TFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPDAKIWGSLLSS-CR 429 (541)
Q Consensus 352 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~-~~ 429 (541)
.+......+...|++++|...|+...+.. |.+...+..+...+...|++++|+..+++. ...|+...+..+... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHH
Confidence 34556667778888888888888877643 556677888888888888888888888887 444543332222211 22
Q ss_pred hcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCC
Q 048358 430 TYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKP 509 (541)
Q Consensus 430 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 509 (541)
..+....|+..++++++.+|+++..+..++.++...|++++|...++++.+... .|
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p------------------------~~ 141 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNL------------------------GA 141 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT------------------------TT
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCc------------------------cc
Confidence 222334578888888888898888889999999999999999998888766421 12
Q ss_pred ChhHHHHHHHHHHHHHhcccCCcccccccC
Q 048358 510 FLKDIFWLLELLALHQDRAKDVIDIMYEDI 539 (541)
Q Consensus 510 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~i 539 (541)
.+..++..|+.++..+|+.++|+..+.+.+
T Consensus 142 ~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 142 QDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp TTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 235678888889999998888887776654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.7e-11 Score=124.97 Aligned_cols=172 Identities=9% Similarity=-0.060 Sum_probs=143.2
Q ss_pred HhcCChHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHH
Q 048358 326 ANHGKAHKAIHLFHEMQ--------RLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLG 397 (541)
Q Consensus 326 ~~~~~~~~a~~~~~~m~--------~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 397 (541)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|+..|+++.+.. +.+...|..+..+|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV--GWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--cchHHHHHHHHHHHH
Confidence 67899999999999988 433 5566778888889999999999999999998753 567788889999999
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 048358 398 RAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMR 475 (541)
Q Consensus 398 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 475 (541)
..|++++|++.|++. ...| +...+..+..++.+.|++++ +..|+++++.+|.++.+|..++.+|.+.|++++|.+.+
T Consensus 479 ~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999887 5556 56778888888999999999 99999999999999999999999999999999999999
Q ss_pred HHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhc
Q 048358 476 KLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDR 527 (541)
Q Consensus 476 ~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 527 (541)
++..+ ++|++..++..++.++...++
T Consensus 558 ~~al~--------------------------l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPP--------------------------TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCT--------------------------TSTTHHHHHHHHHHHTC----
T ss_pred Hhhcc--------------------------cCcccHHHHHHHHHHHHccCC
Confidence 88644 578888888888888766544
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=3.2e-10 Score=104.20 Aligned_cols=166 Identities=12% Similarity=0.022 Sum_probs=85.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHccCCC-----C----hhHHHHHHHHHHhc-CChHHHHHHHHHHHhCCC---CC-C-H
Q 048358 286 ICNALIEMYIKCGCINQASQLFDQMVER-----D----VVSWSTVIGGLANH-GKAHKAIHLFHEMQRLKV---PP-N-D 350 (541)
Q Consensus 286 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~~~---~p-~-~ 350 (541)
+|+.+..+|...|++++|...|++..+- + ..+++.+...|... |++++|+..|++..+... .+ . .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 4555555555555555555555444220 1 23455566666664 666666666666554210 00 0 2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcH-----hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-----
Q 048358 351 ITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKI-----EHYGCLVDLLGRAGRLDQALNIIEEM-PMKPDAK----- 419 (541)
Q Consensus 351 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~----- 419 (541)
.++..+...+...|++++|+..|++..+...-.+.. ..|..+..++...|++++|...|++. .+.|+..
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 238 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES 238 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------H
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 345566666666677777777666666532111111 13455566666666777777666665 4444321
Q ss_pred -HHHHHHHHHh--hcCCHHHHHHHHHHHhccCCCC
Q 048358 420 -IWGSLLSSCR--TYSNLEIAVIAMEHLLVLEPED 451 (541)
Q Consensus 420 -~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~ 451 (541)
.+..++.++. ..+++++|+..|+++..++|..
T Consensus 239 ~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 239 NFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 2233344442 3455666666666666655544
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.9e-10 Score=102.70 Aligned_cols=167 Identities=9% Similarity=0.047 Sum_probs=123.0
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCc---HhHHHHHHHHHHhcCCHHHHHHHHHhC-CC---CCC-HH
Q 048358 348 PNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHK---IEHYGCLVDLLGRAGRLDQALNIIEEM-PM---KPD-AK 419 (541)
Q Consensus 348 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~-~~ 419 (541)
.+...+..+...+...|++++|+..|+.+.+.. |.+ ...+..+..+|.+.|++++|+..|++. .. .|. ..
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 345556666666777777777777777776642 223 456667777777777777777777776 22 222 34
Q ss_pred HHHHHHHHHhh--------cCCHHHHHHHHHHHhccCCCCcchH-----------------HHHHHHHHhcCCHHHHHHH
Q 048358 420 IWGSLLSSCRT--------YSNLEIAVIAMEHLLVLEPEDTGNY-----------------VLLSNIYAKHGRWEDVSRM 474 (541)
Q Consensus 420 ~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~g~~~~A~~~ 474 (541)
.+..+..++.. .|++++|+..|+++++..|+++... ..++.+|.+.|++++|...
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 56666666766 8888999999999888888887766 7779999999999999999
Q ss_pred HHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHH----------hcccCCcccccccC
Q 048358 475 RKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQ----------DRAKDVIDIMYEDI 539 (541)
Q Consensus 475 ~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~i 539 (541)
++++.+... .+|....++..++.+|..+ |+.++|++.+.+.|
T Consensus 171 ~~~~l~~~p-----------------------~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~ 222 (261)
T 3qky_A 171 YEAVFDAYP-----------------------DTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLL 222 (261)
T ss_dssp HHHHHHHCT-----------------------TSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCC-----------------------CCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHH
Confidence 999876432 1344678999999999988 77788888877665
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=2.1e-11 Score=99.62 Aligned_cols=143 Identities=10% Similarity=0.008 Sum_probs=114.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCC
Q 048358 322 IGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGR 401 (541)
Q Consensus 322 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 401 (541)
...+...|++++|+..++...... +-+...+..+...|...|++++|++.|++..+.. |.+...|..+..+|.+.|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCc
Confidence 344556678888888888876643 3334566778888999999999999999988753 5677888999999999999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHH-HHHHhccCCCCcchHHHHHHHHHhcCC
Q 048358 402 LDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIA-MEHLLVLEPEDTGNYVLLSNIYAKHGR 467 (541)
Q Consensus 402 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~ 467 (541)
+++|+..|++. .+.| +..++..+...+.+.|++++|... ++++++++|.++.+|......+.+.|+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 99999999887 5566 567888888899999998776655 699999999999999999999988875
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=4.2e-10 Score=103.49 Aligned_cols=227 Identities=8% Similarity=0.024 Sum_probs=157.7
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHHcc--C-ChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHH
Q 048358 232 EALDVFRQMQMVGIEPDEISIVSVLPACAQL--G-SLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFD 308 (541)
Q Consensus 232 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 308 (541)
+|.+++++..+.- +++...+ .+ .+. + +++.|...+..+ +..|...|++++|...|.
T Consensus 3 ~a~~~~~~a~k~~-~~~~~~~-~~----~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~ 61 (292)
T 1qqe_A 3 DPVELLKRAEKKG-VPSSGFM-KL----FSGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFL 61 (292)
T ss_dssp CHHHHHHHHHHHS-SCCCTHH-HH----HSCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHH
T ss_pred cHHHHHHHHHHHh-CcCCCcc-hh----cCCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHH
Confidence 4566666666542 3322222 22 222 2 477777766654 456788899999999888
Q ss_pred ccCCC-----C----hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC---CCC--HHHHHHHHHHHhcc-CcHHHHHHHH
Q 048358 309 QMVER-----D----VVSWSTVIGGLANHGKAHKAIHLFHEMQRLKV---PPN--DITFIGLLSACAHT-GFWNEGLMYF 373 (541)
Q Consensus 309 ~~~~~-----~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---~p~--~~~~~~l~~~~~~~-g~~~~a~~~~ 373 (541)
+..+- + ..+|+.+..+|...|++++|+..|++..+... .+. ..++..+...|... |++++|+..|
T Consensus 62 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~ 141 (292)
T 1qqe_A 62 KAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCY 141 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 76331 2 45889999999999999999999998765310 111 35788889999996 9999999999
Q ss_pred HHhhhhcCCCCc----HhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH--------HHHHHHHHHHhhcCCHHHHHHH
Q 048358 374 DSMKRDHHIEHK----IEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPDA--------KIWGSLLSSCRTYSNLEIAVIA 440 (541)
Q Consensus 374 ~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~--------~~~~~l~~~~~~~~~~~~a~~~ 440 (541)
++..+...-..+ ..++..+...+.+.|++++|+..|++. ...|+. ..|..+..++...|++++|+..
T Consensus 142 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 221 (292)
T 1qqe_A 142 ELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAART 221 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 998764210111 356888999999999999999999987 333321 2567788889999999999999
Q ss_pred HHHHhccCCCCcch-----HHHHHHHHH--hcCCHHHHHHHHHHhh
Q 048358 441 MEHLLVLEPEDTGN-----YVLLSNIYA--KHGRWEDVSRMRKLIR 479 (541)
Q Consensus 441 ~~~~~~~~~~~~~~-----~~~l~~~~~--~~g~~~~A~~~~~~m~ 479 (541)
+++++++.|..... +..++..+. ..+++++|+..++.+.
T Consensus 222 ~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 222 LQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 99999999876543 444566665 4567888888886653
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.16 E-value=3.2e-09 Score=95.66 Aligned_cols=179 Identities=9% Similarity=-0.006 Sum_probs=131.4
Q ss_pred HHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCC-----ChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048358 268 GEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVER-----DVVSWSTVIGGLANHGKAHKAIHLFHEMQ 342 (541)
Q Consensus 268 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 342 (541)
+...++.....+ +++..++..+..++...|++++|++++.+.... +...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455666555544 344555567888888999999999999887443 44567778889999999999999999998
Q ss_pred hCCCCC-----CHHHHHHHHHH--Hhc--cCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 048358 343 RLKVPP-----NDITFIGLLSA--CAH--TGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM- 412 (541)
Q Consensus 343 ~~~~~p-----~~~~~~~l~~~--~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 412 (541)
+. .| +..+...++.+ ... .+++..|..+|+++... .|+..+-..+..++.+.|++++|.+.++.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 75 56 35666666666 333 34899999999998764 354333344455899999999999999865
Q ss_pred CC----------CC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcch
Q 048358 413 PM----------KP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGN 454 (541)
Q Consensus 413 ~~----------~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 454 (541)
.. .| ++.++..++......|+ +|.++++++.+..|+++.+
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 22 25 55666577766666777 8999999999999998743
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.6e-10 Score=119.32 Aligned_cols=169 Identities=11% Similarity=-0.062 Sum_probs=100.4
Q ss_pred HhcCCHHHHHHHHHccC-----------CCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 048358 295 IKCGCINQASQLFDQMV-----------ERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHT 363 (541)
Q Consensus 295 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 363 (541)
...|++++|.+.+++.. ..+...+..+..++...|++++|+..|+++.+.. +.+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 45566666666666554 1244456666666666666666666666666543 34455666666666666
Q ss_pred CcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHH
Q 048358 364 GFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAM 441 (541)
Q Consensus 364 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~ 441 (541)
|++++|+..|+++.+.. +.+...|..+..+|.+.|++++ ++.|++. ...| +...|..+..++.+.|++++|+..|
T Consensus 481 g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66666666666666532 3345556666666666666666 6666655 3334 3455666666666666666666666
Q ss_pred HHHhccCCCCcchHHHHHHHHHhcCC
Q 048358 442 EHLLVLEPEDTGNYVLLSNIYAKHGR 467 (541)
Q Consensus 442 ~~~~~~~~~~~~~~~~l~~~~~~~g~ 467 (541)
+++++++|.+..++..++.++...|+
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhhcccCcccHHHHHHHHHHHHccCC
Confidence 66666666666666666666655443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.14 E-value=1.5e-09 Score=86.53 Aligned_cols=127 Identities=18% Similarity=0.299 Sum_probs=82.0
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhh
Q 048358 353 FIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRT 430 (541)
Q Consensus 353 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 430 (541)
+..+...+...|++++|..+++.+.+.. +.+...+..+...+...|++++|...++++ ...| +...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 4444555555566666666666555431 334455555666666666666666666655 2222 45566666667777
Q ss_pred cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 431 YSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 431 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
.|++++|...++++.+..|.++..+..++.++.+.|++++|...++++...
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 777777777777777777777777777788888888888888777776653
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.13 E-value=3.1e-09 Score=93.51 Aligned_cols=183 Identities=15% Similarity=0.049 Sum_probs=117.5
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHccCC--CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHH
Q 048358 284 TVICNALIEMYIKCGCINQASQLFDQMVE--RD----VVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPND----ITF 353 (541)
Q Consensus 284 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~ 353 (541)
...+..+...+.+.|++++|...|+++.+ |+ ...+..+..+|...|++++|+..|+++.+.. |+. ..+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHH
Confidence 44455566777777888888888877743 32 2356667777778888888888888777643 322 134
Q ss_pred HHHHHHHhc------------------cCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 048358 354 IGLLSACAH------------------TGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMK 415 (541)
Q Consensus 354 ~~l~~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 415 (541)
..+..++.. .|++++|+..|+.+.+.. |.+...+........ .....
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~----~~~~~--------- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVF----LKDRL--------- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHH----HHHHH---------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHH----HHHHH---------
Confidence 444444433 355666666666665532 222222211111000 00000
Q ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCc---chHHHHHHHHHhcCCHHHHHHHHHHhhhCCCcc
Q 048358 416 PDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDT---GNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKK 485 (541)
Q Consensus 416 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 485 (541)
......+...+.+.|++++|+..|+++++..|+++ .++..++.+|.+.|++++|.+.++.+...+...
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 01113455668899999999999999999999876 579999999999999999999999998876543
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.6e-09 Score=99.24 Aligned_cols=176 Identities=11% Similarity=0.015 Sum_probs=142.8
Q ss_pred HHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhh
Q 048358 300 INQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRD 379 (541)
Q Consensus 300 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 379 (541)
.+.....+......+...+..+...+...|++++|...|++..+.. +-+...+..+...+...|++++|...++.+...
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 3444455555554556677788888999999999999999998875 557788889999999999999999999999874
Q ss_pred cCCCCcHhH-HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC--cch
Q 048358 380 HHIEHKIEH-YGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPED--TGN 454 (541)
Q Consensus 380 ~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~ 454 (541)
.|+... .......+...++.++|...+++. ...| +...+..+...+...|++++|+..++++++.+|.+ ...
T Consensus 181 ---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 181 ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp ---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred ---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 344332 333334466778888898888887 4455 67888999999999999999999999999999988 889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhh
Q 048358 455 YVLLSNIYAKHGRWEDVSRMRKLIR 479 (541)
Q Consensus 455 ~~~l~~~~~~~g~~~~A~~~~~~m~ 479 (541)
+..++.+|...|+.++|...+++..
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 9999999999999999999888754
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.11 E-value=5.4e-10 Score=88.02 Aligned_cols=110 Identities=10% Similarity=0.071 Sum_probs=86.8
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 048358 386 IEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYA 463 (541)
Q Consensus 386 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 463 (541)
...+......|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|.++.+|..++.+|.
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 455667777888888888888888776 4445 56777788888888888888888888888888888888888888888
Q ss_pred hcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHH
Q 048358 464 KHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELL 521 (541)
Q Consensus 464 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~ 521 (541)
..|++++|.+.+++..+ ++|++..++..|+++
T Consensus 93 ~~~~~~~A~~~~~~al~--------------------------l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQ--------------------------VDPSNEEAREGVRNC 124 (126)
T ss_dssp HTTCHHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH--------------------------HCcCCHHHHHHHHHh
Confidence 88888888888888765 367777777777654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.11 E-value=3.5e-09 Score=84.28 Aligned_cols=131 Identities=18% Similarity=0.331 Sum_probs=103.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHH
Q 048358 317 SWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLL 396 (541)
Q Consensus 317 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 396 (541)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|...++++.... +.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHH
Confidence 46677778888888888888888887764 4566777778888888888888888888887642 45566778888888
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC
Q 048358 397 GRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPE 450 (541)
Q Consensus 397 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 450 (541)
...|++++|.+.++++ ...| +...+..+...+...|++++|...++++++.+|.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 8889999998888877 3333 5677888888888999999999999998887775
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.09 E-value=6.7e-10 Score=97.78 Aligned_cols=187 Identities=11% Similarity=-0.019 Sum_probs=126.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcH-hHHHH
Q 048358 315 VVSWSTVIGGLANHGKAHKAIHLFHEMQRLKV-PP-NDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKI-EHYGC 391 (541)
Q Consensus 315 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~ 391 (541)
...+..+...+...|++++|+..|+++.+... .| ....+..+..++.+.|++++|+..|+.+.+...-.+.. ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 44556667778888888888888888877531 11 13467777888888888888888888888754222221 23444
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchH----------------
Q 048358 392 LVDLLGRAGRLDQALNIIEEMPMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNY---------------- 455 (541)
Q Consensus 392 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---------------- 455 (541)
+..++...|.. .+ ..|..+...+...|++++|+..|+++++..|+++.++
T Consensus 84 ~g~~~~~~~~~-----~~---------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~ 149 (225)
T 2yhc_A 84 RGLTNMALDDS-----AL---------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKY 149 (225)
T ss_dssp HHHHHHHHHC----------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhh-----hh---------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHH
Confidence 55555443321 11 1122233344567889999999999999999887665
Q ss_pred -HHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCccc
Q 048358 456 -VLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDI 534 (541)
Q Consensus 456 -~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 534 (541)
..++..|.+.|++++|...++++.+... ..|..+.++..++.+|..+|+.++|++.
T Consensus 150 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-----------------------~~~~~~~a~~~l~~~~~~~g~~~~A~~~ 206 (225)
T 2yhc_A 150 EYSVAEYYTERGAWVAVVNRVEGMLRDYP-----------------------DTQATRDALPLMENAYRQMQMNAQAEKV 206 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHST-----------------------TSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHCc-----------------------CCCccHHHHHHHHHHHHHcCCcHHHHHH
Confidence 4678889999999999999999876421 1223347899999999999999999988
Q ss_pred cccc
Q 048358 535 MYED 538 (541)
Q Consensus 535 ~~~~ 538 (541)
++..
T Consensus 207 ~~~l 210 (225)
T 2yhc_A 207 AKII 210 (225)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.08 E-value=5.4e-10 Score=96.99 Aligned_cols=161 Identities=9% Similarity=0.045 Sum_probs=108.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH----------------HHHHHhccCcHHHHHHHHHHhhhh
Q 048358 316 VSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIG----------------LLSACAHTGFWNEGLMYFDSMKRD 379 (541)
Q Consensus 316 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~----------------l~~~~~~~g~~~~a~~~~~~~~~~ 379 (541)
..+......+...|++++|+..|++..+.. |-+...+.. +..++...|++++|+..|++..+.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 344455667788899999999999988864 334455666 777778888888888888888764
Q ss_pred cCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCC--HHHHHHHHHHHhccCCCCcchH
Q 048358 380 HHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSN--LEIAVIAMEHLLVLEPEDTGNY 455 (541)
Q Consensus 380 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~ 455 (541)
. |.+...+..+..+|...|++++|+..|++. .+.| +..++..+...+...|+ .+.+...+++.....|. ...+
T Consensus 84 ~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~ 160 (208)
T 3urz_A 84 A--PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYAR 160 (208)
T ss_dssp C--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHH
T ss_pred C--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHH
Confidence 3 456777778888888888888888888776 4455 45667777766654443 34455555555432221 2245
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhh
Q 048358 456 VLLSNIYAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 456 ~~l~~~~~~~g~~~~A~~~~~~m~~ 480 (541)
..++.++...|++++|...+++..+
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5567777777888888888887754
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.5e-08 Score=88.02 Aligned_cols=172 Identities=8% Similarity=-0.059 Sum_probs=131.2
Q ss_pred HHHHHHccC-CCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC----cHHHHHHHHHHhh
Q 048358 303 ASQLFDQMV-ERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTG----FWNEGLMYFDSMK 377 (541)
Q Consensus 303 A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~ 377 (541)
|.+.|++.. ..++.++..+...|...+++++|+.+|++..+.| +...+..+...|.. + ++++|...|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 334444432 2466677777777777888888888888888765 55667777777777 6 8888888888886
Q ss_pred hhcCCCCcHhHHHHHHHHHHh----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHhh----cCCHHHHHHHHHHHh
Q 048358 378 RDHHIEHKIEHYGCLVDLLGR----AGRLDQALNIIEEM-PMKPD---AKIWGSLLSSCRT----YSNLEIAVIAMEHLL 445 (541)
Q Consensus 378 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~----~~~~~~a~~~~~~~~ 445 (541)
+. .+...+..|...|.. .+++++|+++|++. ...|. ...+..|...|.. .+++++|+..|+++.
T Consensus 81 ~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 53 356667778888876 78899999988887 44443 7788888888877 789999999999998
Q ss_pred ccCCCCcchHHHHHHHHHhc-C-----CHHHHHHHHHHhhhCCC
Q 048358 446 VLEPEDTGNYVLLSNIYAKH-G-----RWEDVSRMRKLIRSKSM 483 (541)
Q Consensus 446 ~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~~~ 483 (541)
+. |.++..+..|+.+|... | ++++|...+++..+.|.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 87 66677899999998865 3 89999999999887764
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.06 E-value=4.4e-09 Score=91.15 Aligned_cols=130 Identities=9% Similarity=-0.008 Sum_probs=101.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHh
Q 048358 319 STVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGR 398 (541)
Q Consensus 319 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 398 (541)
..+..+|...|++++|+..|++..+.. |-+...+..+..++...|++++|+..|+++.+.. |.+...|..+...|..
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHH
Confidence 348888999999999999999998875 5677889999999999999999999999998853 5667888888888876
Q ss_pred cCC--HHHHHHHHHhCC-CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC
Q 048358 399 AGR--LDQALNIIEEMP-MKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPED 451 (541)
Q Consensus 399 ~g~--~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (541)
.|+ .+.+...++... ..|....+.....++...|++++|+..|++++++.|++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 654 445566666663 22333345555666778899999999999999999973
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.5e-09 Score=91.41 Aligned_cols=159 Identities=9% Similarity=0.062 Sum_probs=103.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHH-H
Q 048358 318 WSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDL-L 396 (541)
Q Consensus 318 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~ 396 (541)
+..+...+...|++++|...|++..+.. |.+...+..+..++...|++++|+..++.+.... |+...+..+... +
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~---p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY---QDNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG---CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc---CChHHHHHHHHHHH
Confidence 3344555566666666666666655543 3445556666666666677777777766665532 233222222111 1
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC--cchHHHHHHHHHhcCCHHHHH
Q 048358 397 GRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPED--TGNYVLLSNIYAKHGRWEDVS 472 (541)
Q Consensus 397 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~ 472 (541)
...+...+|+..+++. ...| +...+..+...+...|++++|+..++++++.+|.. +..+..++.++...|+.++|.
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 1222223456666665 4445 57788888888999999999999999999988764 558899999999999999999
Q ss_pred HHHHHhhh
Q 048358 473 RMRKLIRS 480 (541)
Q Consensus 473 ~~~~~m~~ 480 (541)
..+++...
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887653
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.04 E-value=8e-08 Score=94.62 Aligned_cols=363 Identities=11% Similarity=-0.041 Sum_probs=183.8
Q ss_pred HHHHHHHHHHcCCChHHHHHHHhcCCC--CCcchHHHHHHHHHcCCC-hhHHHHHHHHhhhC-CCCCCCCCCCcccHHHH
Q 048358 48 LVTKMIDVCNSGGDLAYASLLFKQVKE--PNVFLYNAMIRAYTNNHL-YGLAINLYKQMLRD-PRTGSLILPDKFTLPFV 123 (541)
Q Consensus 48 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~g~-~~~A~~~~~~m~~~-~~~~~~~~p~~~~~~~l 123 (541)
+|...+..+-. |+++.+..+|++... |++..|...+.-..+.+. .+....+|+..... |.. +++...|...
T Consensus 17 vyer~l~~~P~-~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d----~~s~~iW~~Y 91 (493)
T 2uy1_A 17 IMEHARRLYMS-KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENY----WDSYGLYKEY 91 (493)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTC----TTCHHHHHHH
T ss_pred HHHHHHHHCCC-CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCC----cccHHHHHHH
Confidence 34444444433 667777777777664 666677766665555442 34455666665542 210 3344555555
Q ss_pred HHHHhc----cCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCH
Q 048358 124 IKSCAG----LLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQM 199 (541)
Q Consensus 124 l~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 199 (541)
+..+.. .++.+.+..+|+.++......-...|...... ........+.+++.+. .+.+
T Consensus 92 i~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~-----------------~~~y 153 (493)
T 2uy1_A 92 IEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVGDT-----------------LPIF 153 (493)
T ss_dssp HHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHHHH-----------------HHHH
T ss_pred HHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHHHH-----------------hHHH
Confidence 554432 34566677777777663211111122211111 1111112222222110 0112
Q ss_pred HHHHHHHhcCC----CCCcchHHHHHHHHHhcC--C-----hHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHH
Q 048358 200 KKARMLFDKMP----YTTIVSWTAMISGYTHIG--S-----YAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELG 268 (541)
Q Consensus 200 ~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g--~-----~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 268 (541)
..|..+++.+. ..+...|...+..-...+ - .+.+..+|++++... +.+...|...+.-+...|+++.|
T Consensus 154 ~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~a 232 (493)
T 2uy1_A 154 QSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKA 232 (493)
T ss_dssp HHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 22222222111 112334555444432221 1 345667788877653 44566666667777778888888
Q ss_pred HHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHH-HHHHHccC--C-------C---ChhHHHHHHHHHHhcCChHHHH
Q 048358 269 EWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQA-SQLFDQMV--E-------R---DVVSWSTVIGGLANHGKAHKAI 335 (541)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~--~-------~---~~~~~~~l~~~~~~~~~~~~a~ 335 (541)
..++..+... +.+...+.. |....+.++. ..+.+... . + ....|...+....+.++.+.|.
T Consensus 233 r~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR 306 (493)
T 2uy1_A 233 KKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFR 306 (493)
T ss_dssp HHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHH
Confidence 8888888877 444333332 2221111111 11111110 0 0 1234555555555667778888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHh-ccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 048358 336 HLFHEMQRLKVPPNDITFIGLLSACA-HTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPM 414 (541)
Q Consensus 336 ~~~~~m~~~~~~p~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 414 (541)
.+|.+. ... +.+...|...+..-. ..++++.|..+|+...+.. +.++..+...++.....|+.+.|..+|+++.
T Consensus 307 ~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~~- 381 (493)
T 2uy1_A 307 KLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH--PDSTLLKEEFFLFLLRIGDEENARALFKRLE- 381 (493)
T ss_dssp HHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-
T ss_pred HHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-
Confidence 888777 221 223333432222111 1235777888888777653 3334455666776677778888888888773
Q ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 048358 415 KPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLV 446 (541)
Q Consensus 415 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 446 (541)
.....|...+..-...|+.+.+..++++..+
T Consensus 382 -k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 382 -KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp -CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2466677776666667777777777777663
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=2.6e-09 Score=108.31 Aligned_cols=160 Identities=14% Similarity=0.094 Sum_probs=127.6
Q ss_pred cCCHHHHHHHHHccCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 048358 297 CGCINQASQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYF 373 (541)
Q Consensus 297 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 373 (541)
.|++++|...|++..+ .+...|..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999998855 356789999999999999999999999999875 566788999999999999999999999
Q ss_pred HHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhc---CCHHHHHHHHHHHhccC
Q 048358 374 DSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTY---SNLEIAVIAMEHLLVLE 448 (541)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~ 448 (541)
++..+.. +.+...+..+...|.+.|++++|.+.|++. ...| +...+..+...+... |++++|.+.++++++.+
T Consensus 81 ~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 9998853 556788999999999999999999999987 4445 577888899999999 99999999999999999
Q ss_pred CCCcchHHHHH
Q 048358 449 PEDTGNYVLLS 459 (541)
Q Consensus 449 ~~~~~~~~~l~ 459 (541)
|.+...+..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99988888776
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.02 E-value=1.2e-10 Score=94.71 Aligned_cols=97 Identities=8% Similarity=-0.030 Sum_probs=87.0
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 048358 385 KIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIY 462 (541)
Q Consensus 385 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 462 (541)
+...+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..|+++++++|+++.+|..++.+|
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 4567888889999999999999999988 5556 6788889999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHhhhC
Q 048358 463 AKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 463 ~~~g~~~~A~~~~~~m~~~ 481 (541)
.+.|++++|...|++..+.
T Consensus 115 ~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999998764
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.00 E-value=8.1e-09 Score=95.57 Aligned_cols=219 Identities=12% Similarity=0.060 Sum_probs=150.3
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHc-cCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHH
Q 048358 226 HIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQ-LGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQAS 304 (541)
Q Consensus 226 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 304 (541)
..|++++|.+++++..+.. +.. +.. .++++.|...|..+ +..|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 3566778888887766531 111 111 35666666655433 45667778888887
Q ss_pred HHHHccCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHhccCcHHHH
Q 048358 305 QLFDQMVE-----RD----VVSWSTVIGGLANHGKAHKAIHLFHEMQRL----KVPPN--DITFIGLLSACAHTGFWNEG 369 (541)
Q Consensus 305 ~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a 369 (541)
..|.+..+ .+ ..+|+.+...|...|++++|+..|++..+. | .|. ..++..+...|.. |++++|
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg~~~~~-g~~~~A 134 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAAMALDRAGKLMEP-LDLSKA 134 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHc-CCHHHH
Confidence 77776532 11 346778888888999999999998886542 2 222 3567788888888 999999
Q ss_pred HHHHHHhhhhcCCC----CcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHhhcCCHHHH
Q 048358 370 LMYFDSMKRDHHIE----HKIEHYGCLVDLLGRAGRLDQALNIIEEM-PM---KPD----AKIWGSLLSSCRTYSNLEIA 437 (541)
Q Consensus 370 ~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~~~~~~~a 437 (541)
+..|++......-. ....++..+...|.+.|++++|+..|++. .+ .++ ...+..+..++...|++++|
T Consensus 135 ~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A 214 (307)
T 2ifu_A 135 VHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA 214 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999887632101 11467888999999999999999999887 21 122 23566667778888999999
Q ss_pred HHHHHHHhccCCCCcch-----HHHHHHHHHhcCCHHHHHHH
Q 048358 438 VIAMEHLLVLEPEDTGN-----YVLLSNIYAKHGRWEDVSRM 474 (541)
Q Consensus 438 ~~~~~~~~~~~~~~~~~-----~~~l~~~~~~~g~~~~A~~~ 474 (541)
...+++++ ..|..... ...++..+ ..|+.+.+.++
T Consensus 215 ~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 215 QKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 99999999 88865432 34455555 56777776663
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.98 E-value=2.8e-09 Score=86.52 Aligned_cols=102 Identities=9% Similarity=-0.050 Sum_probs=90.5
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 048358 349 NDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLS 426 (541)
Q Consensus 349 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 426 (541)
+...+..+...+...|++++|+..|+.+.... |.+...|..+..+|...|++++|+..|++. .+.| +...|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 34577788889999999999999999999853 667888999999999999999999999998 5556 5688999999
Q ss_pred HHhhcCCHHHHHHHHHHHhccCCCCc
Q 048358 427 SCRTYSNLEIAVIAMEHLLVLEPEDT 452 (541)
Q Consensus 427 ~~~~~~~~~~a~~~~~~~~~~~~~~~ 452 (541)
++...|++++|+..|++++++.|+++
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999998854
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.98 E-value=3.2e-09 Score=92.44 Aligned_cols=142 Identities=11% Similarity=0.039 Sum_probs=120.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 048358 388 HYGCLVDLLGRAGRLDQALNIIEEMPMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGR 467 (541)
Q Consensus 388 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 467 (541)
.+..+...+...|++++|++.|++.- .|+...+..+...+...|++++|+..++++++.+|.++..+..++.+|...|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ-DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHccc
Confidence 35667788889999999999999983 67889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCcccccccCC
Q 048358 468 WEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMYEDIG 540 (541)
Q Consensus 468 ~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~i~ 540 (541)
+++|...+++..+...... .. .....+...+|....++..++.+|..+|+.++|.+.++++++
T Consensus 87 ~~~A~~~~~~al~~~~~~~-~~---------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQ-LI---------DYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCS-EE---------ECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCcc-HH---------HHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999999999987643221 11 111222256788899999999999999999999998887654
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=2.2e-09 Score=87.29 Aligned_cols=108 Identities=9% Similarity=0.090 Sum_probs=88.6
Q ss_pred HHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCC
Q 048358 372 YFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEP 449 (541)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 449 (541)
.|+.+... -+.+...+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..|+++++++|
T Consensus 9 ~~~~al~~--~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 9 TIAMLNEI--SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp SHHHHTTC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hHHHHHcC--CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 34444432 1345666777888889999999999999887 4445 677888888889999999999999999999999
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 450 EDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 450 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
+++..+..++.+|...|++++|...+++..+.
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988764
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=9.5e-09 Score=104.13 Aligned_cols=147 Identities=9% Similarity=-0.058 Sum_probs=88.0
Q ss_pred cCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHhcCChHHHHHHH
Q 048358 262 LGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAIHLF 338 (541)
Q Consensus 262 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 338 (541)
.|++++|...++++.+.. +.+...+..+...|...|++++|.+.|++..+ .+...+..+..+|...|++++|...|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 356677777777666543 23456677777777777777777777776643 24556777777777777777777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhc---CCHHHHHHHHHhC
Q 048358 339 HEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRA---GRLDQALNIIEEM 412 (541)
Q Consensus 339 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 412 (541)
++..+.. +.+...+..+..++...|++++|.+.|++..+.. +.+...+..+...+... |++++|.+.+++.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 7776654 4455667777777777777777777777776642 34556667777777777 7777777777665
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.1e-07 Score=84.67 Aligned_cols=149 Identities=15% Similarity=0.192 Sum_probs=76.0
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHH--HHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCC-----
Q 048358 329 GKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWN--EGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGR----- 401 (541)
Q Consensus 329 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----- 401 (541)
+++++++.++.++.+.. +-|..+|..-..++.+.|.++ ++++.++++.+.+ +.+...|+.-...+.+.|+
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccchhh
Confidence 44555555555555543 344444444444444444444 5555555555432 3344445444444444444
Q ss_pred -HHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCH-HHHHHHHHHHhccC---CCCcchHHHHHHHHHhcCCHHHHHHH
Q 048358 402 -LDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNL-EIAVIAMEHLLVLE---PEDTGNYVLLSNIYAKHGRWEDVSRM 474 (541)
Q Consensus 402 -~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~ 474 (541)
++++++.++++ ...| |...|+.+...+.+.|+. +.+..+++++.+.+ |.++.++..++.+|.+.|+.++|.++
T Consensus 201 ~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 201 TIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 55555555544 2333 455555555555555542 22444555555444 55555666666666666666666666
Q ss_pred HHHhhh
Q 048358 475 RKLIRS 480 (541)
Q Consensus 475 ~~~m~~ 480 (541)
++.+.+
T Consensus 281 ~~~l~~ 286 (306)
T 3dra_A 281 YDLLKS 286 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.95 E-value=9.2e-09 Score=80.87 Aligned_cols=110 Identities=11% Similarity=0.033 Sum_probs=93.6
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 048358 351 ITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSC 428 (541)
Q Consensus 351 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 428 (541)
..+......|.+.|++++|++.|++..+.. |.+...|..+..+|.+.|++++|++.|++. .+.| +...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 456677888888999999999999888753 567788888999999999999999999887 4455 578899999999
Q ss_pred hhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 048358 429 RTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIY 462 (541)
Q Consensus 429 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 462 (541)
...|++++|++.|+++++++|.++.++..|..++
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 9999999999999999999999999888887653
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.7e-08 Score=80.07 Aligned_cols=119 Identities=13% Similarity=0.058 Sum_probs=93.0
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 048358 383 EHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSN 460 (541)
Q Consensus 383 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 460 (541)
+.+...+..+...+.+.|++++|.+.|++. ...| +...+..+...+...|++++|+..++++++..|.++..+..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 445666777888888888888888888776 4445 56777778888888888888888888888888888888888888
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhc
Q 048358 461 IYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDR 527 (541)
Q Consensus 461 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 527 (541)
++.+.|++++|...+++..+. +|++..++..++.++..+|+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~--------------------------~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL--------------------------DSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--------------------------CGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHhhHHHHHHHHHHHHHh--------------------------CCCchHHHHHHHHHHHHhcC
Confidence 888888888888888887652 46667778888888777653
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.91 E-value=2.9e-07 Score=84.48 Aligned_cols=161 Identities=7% Similarity=-0.010 Sum_probs=120.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHH----HHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCc----HhHHH
Q 048358 320 TVIGGLANHGKAHKAIHLFHEMQRLK-VPPNDI----TFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHK----IEHYG 390 (541)
Q Consensus 320 ~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~ 390 (541)
..+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|+..|+.+.....-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34667788899999999999887743 122211 2334666777888999999999998863222222 33688
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC-------CC-CC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC------cchH
Q 048358 391 CLVDLLGRAGRLDQALNIIEEMP-------MK-PD-AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPED------TGNY 455 (541)
Q Consensus 391 ~l~~~~~~~g~~~~A~~~~~~~~-------~~-p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~ 455 (541)
.+...|...|++++|+..|+++- .. +. ..++..+...|...|++++|+..+++++++.+.. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 89999999999999998888761 11 22 3477888889999999999999999998765322 5689
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHhhh
Q 048358 456 VLLSNIYAKHGR-WEDVSRMRKLIRS 480 (541)
Q Consensus 456 ~~l~~~~~~~g~-~~~A~~~~~~m~~ 480 (541)
..++.+|.+.|+ +++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999994 6999999888754
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.91 E-value=2.3e-08 Score=78.96 Aligned_cols=118 Identities=13% Similarity=0.104 Sum_probs=83.6
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 048358 385 KIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIY 462 (541)
Q Consensus 385 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 462 (541)
+...+..+...+...|++++|...+++. ...| +...+..+...+...|++++|+..++++++..|.++..+..++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 4455666667777777777777777765 2233 5566667777777777777777777777777777777777777777
Q ss_pred HhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcc
Q 048358 463 AKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRA 528 (541)
Q Consensus 463 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 528 (541)
.+.|++++|...+++..+. +|++..++..++.++..+|+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~--------------------------~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL--------------------------DPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH--------------------------STTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhc--------------------------CccchHHHHHHHHHHHHHhcC
Confidence 7778888887777776542 466667777777777777664
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.90 E-value=7.7e-08 Score=83.55 Aligned_cols=145 Identities=6% Similarity=-0.105 Sum_probs=96.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcH
Q 048358 287 CNALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFW 366 (541)
Q Consensus 287 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 366 (541)
+..+...+...|++++|...|++...++..+|..+..+|...|++++|+..|++..... +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 44566677777888888888887777777777777777888888888888887777654 45566777777777777777
Q ss_pred HHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHh
Q 048358 367 NEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLL 445 (541)
Q Consensus 367 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 445 (541)
++|+..|+...+.. +.+.... +...| +...| ....+..+..++...|++++|...+++++
T Consensus 88 ~~A~~~~~~al~~~--~~~~~~~------~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 88 DLAIKDLKEALIQL--RGNQLID------YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHHHHTT--TTCSEEE------CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCccHHH------HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 77777777776532 1111000 00000 01223 23566667777777778888888888877
Q ss_pred ccCCCC
Q 048358 446 VLEPED 451 (541)
Q Consensus 446 ~~~~~~ 451 (541)
+..|.+
T Consensus 149 ~~~p~~ 154 (213)
T 1hh8_A 149 SMKSEP 154 (213)
T ss_dssp TTCCSG
T ss_pred HcCccc
Confidence 777765
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.6e-08 Score=79.67 Aligned_cols=120 Identities=13% Similarity=0.072 Sum_probs=96.8
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 048358 385 KIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIY 462 (541)
Q Consensus 385 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 462 (541)
+...+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++.+|.++..|..++.++
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3456777788888889999999888887 4445 5788888888899999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHH
Q 048358 463 AKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALH 524 (541)
Q Consensus 463 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 524 (541)
...|++++|...+++..+..... ...|++..+...+..+...
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~--------------------~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEV--------------------NNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHH--------------------HTTTTHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCccc--------------------CCchhHHHHHHHHHHHHHh
Confidence 99999999999999887642100 1237888888888777654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.88 E-value=2.5e-06 Score=77.67 Aligned_cols=230 Identities=9% Similarity=-0.037 Sum_probs=173.8
Q ss_pred HhcCC-hHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHccC--ChHHHHHHHHHHHHhCCCccHhHHHHHHHHH----Hh
Q 048358 225 THIGS-YAEALDVFRQMQMVGIEPDE-ISIVSVLPACAQLG--SLELGEWIHMYCDKNHLLRRTVICNALIEMY----IK 296 (541)
Q Consensus 225 ~~~g~-~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~ 296 (541)
.+.|. .++|+..+.+++.. .|+. ..++.--..+...+ +++++...++.+.....+ +..+|+.-...+ ..
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~ 119 (306)
T 3dra_A 43 MKAEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMEL 119 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHh
Confidence 34444 46788888888866 4544 34555556666677 888888888888876533 355555544444 44
Q ss_pred c---CCHHHHHHHHHccCC---CChhHHHHHHHHHHhcCChH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc---
Q 048358 297 C---GCINQASQLFDQMVE---RDVVSWSTVIGGLANHGKAH--KAIHLFHEMQRLKVPPNDITFIGLLSACAHTGF--- 365 (541)
Q Consensus 297 ~---g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~--- 365 (541)
. +++++++.+++.+.+ .|..+|+.-.-.+...|.++ ++++.++++.+.. +-|...|+.-.......+.
T Consensus 120 l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 120 NNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp TTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCC
T ss_pred ccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccch
Confidence 4 788999999988844 46677887777778888888 9999999999886 5677788777666666666
Q ss_pred ---HHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHH-HHHHHHhC-CC----CCCHHHHHHHHHHHhhcCCHHH
Q 048358 366 ---WNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQ-ALNIIEEM-PM----KPDAKIWGSLLSSCRTYSNLEI 436 (541)
Q Consensus 366 ---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~l~~~~~~~~~~~~ 436 (541)
++++++.++.+.... +.|...|+.+...+.+.|+..+ +..+++++ .. ..+...+..+...+.+.|+.++
T Consensus 199 ~~~~~eEl~~~~~aI~~~--p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~ 276 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKC--PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNE 276 (306)
T ss_dssp HHHHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHH
T ss_pred hhhHHHHHHHHHHHHHhC--CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHH
Confidence 899999999988753 7788899999999999888555 55577766 22 2377889999999999999999
Q ss_pred HHHHHHHHhc-cCCCCcchHHHHHH
Q 048358 437 AVIAMEHLLV-LEPEDTGNYVLLSN 460 (541)
Q Consensus 437 a~~~~~~~~~-~~~~~~~~~~~l~~ 460 (541)
|+++++.+.+ .+|.....|...+.
T Consensus 277 A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 277 SRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHHHHhccChHHHHHHHHHHh
Confidence 9999999996 79998888876654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.88 E-value=9.8e-09 Score=95.03 Aligned_cols=196 Identities=8% Similarity=-0.007 Sum_probs=148.7
Q ss_pred ccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHh-cCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 048358 261 QLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIK-CGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFH 339 (541)
Q Consensus 261 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 339 (541)
..|++++|..++++..+.... . +.+ .++++.|...|.. ....|...|++++|...|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~----------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S----------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C----------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c----------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHH
Confidence 356788888888887764321 1 112 5788888888765 4667888999999999999
Q ss_pred HHHhC----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhc---CCCC-cHhHHHHHHHHHHhcCCHHHHHHHHH
Q 048358 340 EMQRL----KVPP-NDITFIGLLSACAHTGFWNEGLMYFDSMKRDH---HIEH-KIEHYGCLVDLLGRAGRLDQALNIIE 410 (541)
Q Consensus 340 ~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 410 (541)
+..+. +-++ -..+|..+..+|...|++++|+..|++..... +-+. ...++..+...|.. |++++|+..|+
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ 139 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 87653 2111 13478888899999999999999999876531 1111 24578888999988 99999999998
Q ss_pred hC-CCCC-------CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCc------chHHHHHHHHHhcCCHHHHHHHHH
Q 048358 411 EM-PMKP-------DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDT------GNYVLLSNIYAKHGRWEDVSRMRK 476 (541)
Q Consensus 411 ~~-~~~p-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~ 476 (541)
+. .+.| ...++..+...+...|++++|+..+++++++.|.+. ..+..++.++...|++++|...++
T Consensus 140 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 140 QAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 86 2111 146788888899999999999999999998765443 367778888889999999999999
Q ss_pred Hhh
Q 048358 477 LIR 479 (541)
Q Consensus 477 ~m~ 479 (541)
+..
T Consensus 220 ~al 222 (307)
T 2ifu_A 220 ESY 222 (307)
T ss_dssp HHT
T ss_pred HHh
Confidence 987
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.87 E-value=4.8e-08 Score=76.33 Aligned_cols=94 Identities=19% Similarity=0.337 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 048358 387 EHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAK 464 (541)
Q Consensus 387 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 464 (541)
..+..+...+...|++++|.+.++++ ...| +..++..+...+...|++++|+..++++.+..|.++..+..++.++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 89 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 34445555555555555555555554 1122 344555555555556666666666666666556555566666666666
Q ss_pred cCCHHHHHHHHHHhhh
Q 048358 465 HGRWEDVSRMRKLIRS 480 (541)
Q Consensus 465 ~g~~~~A~~~~~~m~~ 480 (541)
.|++++|...++++.+
T Consensus 90 ~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 90 QGDYDEAIEYYQKALE 105 (125)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHH
Confidence 6666666666655543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.1e-07 Score=87.15 Aligned_cols=163 Identities=7% Similarity=0.001 Sum_probs=118.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCC--CCc--H
Q 048358 317 SWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPND------ITFIGLLSACAHTGFWNEGLMYFDSMKRDHHI--EHK--I 386 (541)
Q Consensus 317 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~--~ 386 (541)
.+...+..+...|++++|.+.+.+..+.. +... ..+..+...+...|++++|+..+++....... .+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccc-cCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34456677788888999988888877653 2222 12344556677888999999998887642111 111 4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC-----HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC------C
Q 048358 387 EHYGCLVDLLGRAGRLDQALNIIEEM----PMKPD-----AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPE------D 451 (541)
Q Consensus 387 ~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~ 451 (541)
.+|+.+...|...|++++|...|++. ...|+ ..++..+...|...|++++|+..++++++..+. -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 47888899999999999999888775 11222 257888888899999999999999999875422 1
Q ss_pred cchHHHHHHHHHhcCCHHHH-HHHHHHhhh
Q 048358 452 TGNYVLLSNIYAKHGRWEDV-SRMRKLIRS 480 (541)
Q Consensus 452 ~~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 480 (541)
..+|..++.+|.+.|++++| ...+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 56788999999999999999 777777643
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.85 E-value=1.7e-08 Score=81.39 Aligned_cols=97 Identities=14% Similarity=0.077 Sum_probs=83.0
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 048358 385 KIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIY 462 (541)
Q Consensus 385 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 462 (541)
+...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..|+++++.+|.++..+..++.+|
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 4556677788888899999999998887 4445 6778888888899999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHhhhC
Q 048358 463 AKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 463 ~~~g~~~~A~~~~~~m~~~ 481 (541)
...|++++|...+++..+.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999988764
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.85 E-value=1.8e-08 Score=91.84 Aligned_cols=192 Identities=10% Similarity=0.007 Sum_probs=130.9
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHccCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048358 283 RTVICNALIEMYIKCGCINQASQLFDQMVE--R-DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSA 359 (541)
Q Consensus 283 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 359 (541)
+...+..+...+...|++++|...|++..+ | +...|..+..+|...|++++|...+++..+.. +.+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 345667777788888888888888887632 3 66778888888888899999999888888765 5567788888888
Q ss_pred HhccCcHHHHHHHHHHhhhhcCCCCcH-hHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHH
Q 048358 360 CAHTGFWNEGLMYFDSMKRDHHIEHKI-EHYGCLVDLLGRAGRLDQALNIIEEMPMKPDAKIWGSLLSSCRTYSNLEIAV 438 (541)
Q Consensus 360 ~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 438 (541)
+...|++++|...|+...+.. |+. ..+...+....+..+...... .......++......+.. + ..|+.++|+
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~---p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~-l-~~~~~~~A~ 155 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLA---KEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTR-L-IAAEREREL 155 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH---HHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHH-H-HHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC---ccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHH-H-HHHHHHHHH
Confidence 889999999999888877642 211 111112222222211111111 222232333333333322 2 368999999
Q ss_pred HHHHHHhccCCCCcchHHHHHHHHHhc-CCHHHHHHHHHHhhhC
Q 048358 439 IAMEHLLVLEPEDTGNYVLLSNIYAKH-GRWEDVSRMRKLIRSK 481 (541)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 481 (541)
+.++++++.+|++......+...+.+. +.+++|.++|.++.+.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999998877777787777776 7899999999988764
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=8e-09 Score=88.77 Aligned_cols=145 Identities=12% Similarity=0.002 Sum_probs=101.3
Q ss_pred ccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-C----------------HHHHHH
Q 048358 362 HTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-D----------------AKIWGS 423 (541)
Q Consensus 362 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~----------------~~~~~~ 423 (541)
..|+++.+.+.|+..... .......+..+...+.+.|++++|+..|++. ...| + ...+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (198)
T 2fbn_A 16 NLYFQGAKKSIYDYTDEE--KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLN 93 (198)
T ss_dssp ------CCCSGGGCCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCchhhCCHHH--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence 345555555555433321 1223445666677777777777777777765 2222 1 267777
Q ss_pred HHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEe
Q 048358 424 LLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVS 503 (541)
Q Consensus 424 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (541)
+..++...|++++|+..++++++.+|.++.++..++.+|...|++++|...+++..+
T Consensus 94 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~----------------------- 150 (198)
T 2fbn_A 94 LATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS----------------------- 150 (198)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----------------------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH-----------------------
Confidence 888888999999999999999999999999999999999999999999999988765
Q ss_pred CCCCCCChhHHHHHHHHHHHHHhcccCCccc
Q 048358 504 GDDTKPFLKDIFWLLELLALHQDRAKDVIDI 534 (541)
Q Consensus 504 ~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 534 (541)
.+|++..++..++.++..+++.+++...
T Consensus 151 ---~~p~~~~~~~~l~~~~~~~~~~~~~~~~ 178 (198)
T 2fbn_A 151 ---LNPNNLDIRNSYELCVNKLKEARKKDKL 178 (198)
T ss_dssp ---HSTTCHHHHHHHHHHHHHHHHHHC----
T ss_pred ---HCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888899999999988888777643
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.4e-07 Score=81.78 Aligned_cols=175 Identities=8% Similarity=-0.097 Sum_probs=123.1
Q ss_pred HHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC-CChhHHHHHHHHHHhcC----ChHHHHHHHHHHH
Q 048358 268 GEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE-RDVVSWSTVIGGLANHG----KAHKAIHLFHEMQ 342 (541)
Q Consensus 268 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~----~~~~a~~~~~~m~ 342 (541)
|.+.|....+.| ++..+..|...|...+++++|...|++..+ .++..+..|...|.. + ++++|..+|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 344455554443 455666677777777777777777777644 356667777777766 5 7888888888887
Q ss_pred hCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHhhhhcCCC-CcHhHHHHHHHHHHh----cCCHHHHHHHHHhC-
Q 048358 343 RLKVPPNDITFIGLLSACAH----TGFWNEGLMYFDSMKRDHHIE-HKIEHYGCLVDLLGR----AGRLDQALNIIEEM- 412 (541)
Q Consensus 343 ~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~- 412 (541)
+.| +...+..|...|.. .+++++|+..|++..+.. .. .+...+..|...|.. .+++++|+++|++.
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~-~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS-ESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST-TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC-CCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 765 55667777777776 788888888888887642 11 126677788888887 77889999988887
Q ss_pred CCCCCHHHHHHHHHHHhhc-C-----CHHHHHHHHHHHhccCCC
Q 048358 413 PMKPDAKIWGSLLSSCRTY-S-----NLEIAVIAMEHLLVLEPE 450 (541)
Q Consensus 413 ~~~p~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~~~ 450 (541)
...++...+..|...|... | +.++|+..|+++.+.+.+
T Consensus 157 ~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 157 SLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 3334556677777776543 3 889999999988887643
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.84 E-value=7.4e-08 Score=79.77 Aligned_cols=128 Identities=12% Similarity=0.055 Sum_probs=102.2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 048358 351 ITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSC 428 (541)
Q Consensus 351 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 428 (541)
..+..+...+...|++++|...|+...+.. +.+...+..+...+...|++++|...+++. ...| +...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 345666777778888888888888887642 456777888888888888888888888876 3334 567888888889
Q ss_pred hhcCCHHHHHHHHHHHhccCCCCcchHHHHHHH--HHhcCCHHHHHHHHHHhhh
Q 048358 429 RTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNI--YAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 429 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~ 480 (541)
...|++++|...++++++..|.+...+..+..+ +...|++++|...++....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999999988888555554 7888999999999887653
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.80 E-value=1.1e-08 Score=95.79 Aligned_cols=128 Identities=10% Similarity=0.061 Sum_probs=76.9
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCc---------------HhHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 048358 349 NDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHK---------------IEHYGCLVDLLGRAGRLDQALNIIEEM- 412 (541)
Q Consensus 349 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~- 412 (541)
+...+..+...+.+.|++++|+..|++..... +.+ ...|..+..+|.+.|++++|+..+++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34456666666667777777777777666532 222 355666666666666666666666655
Q ss_pred CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHH-HHHHHHh
Q 048358 413 PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDV-SRMRKLI 478 (541)
Q Consensus 413 ~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m 478 (541)
.+.| +...|..+..++...|++++|+..|+++++++|.+..++..++.++.+.|++++| ..+++.|
T Consensus 224 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 224 ELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 4555666666666666666666666666666666666666666666666666666 3344444
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.79 E-value=2.9e-06 Score=83.47 Aligned_cols=354 Identities=10% Similarity=-0.017 Sum_probs=185.8
Q ss_pred CCC-hhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCC-
Q 048358 90 NHL-YGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDE- 167 (541)
Q Consensus 90 ~g~-~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~- 167 (541)
.|+ ++.|..+|+.+... -|. |+.+.+..+|+..+.. .|+...|...+....+.++
T Consensus 7 ~~~~i~~aR~vyer~l~~-------~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~ 63 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRL-------YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQK 63 (493)
T ss_dssp -----CCHHHHHHHHHHH-------HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC--
T ss_pred cCcchHHHHHHHHHHHHH-------CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCch
Confidence 444 55666666666654 222 8888888888888874 4688888877777666653
Q ss_pred hHHHHHHHhhcCC------CChhhHHHHHHHHH----hcCCHHHHHHHHhcCCCCCcc----hHHHHHHHHHhc------
Q 048358 168 LIEAHKVFEEMTD------RDIVAWNNLISGYA----RLGQMKKARMLFDKMPYTTIV----SWTAMISGYTHI------ 227 (541)
Q Consensus 168 ~~~A~~~~~~~~~------~~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~----~~~~l~~~~~~~------ 227 (541)
.+....+|+.... .+...|...+..+. ..++++.+.++|++....... .|......-...
T Consensus 64 ~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~ 143 (493)
T 2uy1_A 64 KFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGK 143 (493)
T ss_dssp --CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHH
Confidence 3344555555432 34566666665543 245677788888876542121 222222211111
Q ss_pred -------CChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcc--CC-----hHHHHHHHHHHHHhCCCccHhHHHHHHHH
Q 048358 228 -------GSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQL--GS-----LELGEWIHMYCDKNHLLRRTVICNALIEM 293 (541)
Q Consensus 228 -------g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 293 (541)
+.+..|..+++.+...--..+...|...+.--... +- .+.+..+|+.+.... +.+..+|...+..
T Consensus 144 ~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~ 222 (493)
T 2uy1_A 144 KIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEY 222 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 12223333344333210001222333333322111 11 234556777766643 4446677777777
Q ss_pred HHhcCCHHHHHHHHHccCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHhC---C------CCC---CHHHHHHHHHHH
Q 048358 294 YIKCGCINQASQLFDQMVE-RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRL---K------VPP---NDITFIGLLSAC 360 (541)
Q Consensus 294 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~------~~p---~~~~~~~l~~~~ 360 (541)
+.+.|+.+.|..+|++... |....... .|....+.++. ++.+.+. . ..+ ....|...+...
T Consensus 223 ~~~~~~~~~ar~i~erAi~~P~~~~l~~---~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~ 296 (493)
T 2uy1_A 223 LIGIGQKEKAKKVVERGIEMSDGMFLSL---YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYV 296 (493)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCSSHHHH---HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhCCCcHHHHH---HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHH
Confidence 7777888888887776532 32221111 22222111221 2222211 0 001 113345555555
Q ss_pred hccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHH
Q 048358 361 AHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAG-RLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIA 437 (541)
Q Consensus 361 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a 437 (541)
.+.++++.|..+|+.. +.. +.+...|...+..-...+ +.+.|..+|+.. ..-| +...|...+......|+.+.|
T Consensus 297 ~r~~~~~~AR~i~~~A-~~~--~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~a 373 (493)
T 2uy1_A 297 LKKRGLELFRKLFIEL-GNE--GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENA 373 (493)
T ss_dssp HHHHCHHHHHHHHHHH-TTS--CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHcCCHHHHHHHHHHh-hCC--CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 5667788888888877 321 123344443333322333 578888888776 1113 234455566666777888888
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048358 438 VIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 480 (541)
..+|+++. .....|...+..-...|+.+.+..+++++..
T Consensus 374 R~l~er~~----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 374 RALFKRLE----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHSC----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88888862 3456677777777777888888887776653
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.79 E-value=1.1e-07 Score=74.14 Aligned_cols=115 Identities=19% Similarity=0.295 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 048358 350 DITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSS 427 (541)
Q Consensus 350 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 427 (541)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...+.+.|++++|..+++++ ...| +..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 4566777777888888888888888887642 455677788888888888888888888877 3233 56788888888
Q ss_pred HhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 048358 428 CRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHG 466 (541)
Q Consensus 428 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 466 (541)
+...|++++|...++++.+..|.++..+..++.++.+.|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999988888877654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.79 E-value=3.9e-08 Score=81.33 Aligned_cols=93 Identities=10% Similarity=0.098 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCE
Q 048358 418 AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNE 497 (541)
Q Consensus 418 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~ 497 (541)
...|..+..++.+.|++++|+..++++++++|.++.+|..++.+|...|++++|...+++...
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~----------------- 125 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR----------------- 125 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh-----------------
Confidence 467888888999999999999999999999999999999999999999999999999999876
Q ss_pred EEEEEeCCCCCCChh-HHHHHHHHHHHHHhcccCCccccc
Q 048358 498 VQEFVSGDDTKPFLK-DIFWLLELLALHQDRAKDVIDIMY 536 (541)
Q Consensus 498 ~~~~~~~~~~~p~~~-~~~~~l~~~~~~~~~~~~a~~~~~ 536 (541)
++|+++ .+...|+.+...+++..+....+.
T Consensus 126 ---------l~p~~~~~~~~~l~~~~~~~~~~~~~~k~~~ 156 (162)
T 3rkv_A 126 ---------NHPAAASVVAREMKIVTERRAEKKADSRVTY 156 (162)
T ss_dssp ---------HCGGGHHHHHHHHHHHHHHHHHHTTSSCC--
T ss_pred ---------cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888 778899999998887776665443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.77 E-value=6.9e-08 Score=76.14 Aligned_cols=118 Identities=11% Similarity=0.054 Sum_probs=96.9
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 048358 349 NDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLS 426 (541)
Q Consensus 349 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 426 (541)
+...+..+...+...|+++.|...|+...... +.+...+..+...+...|++++|.+.+++. ...| +...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 34566677777888888888888888887642 456777888888888889999998888876 3334 5678888888
Q ss_pred HHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCH
Q 048358 427 SCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRW 468 (541)
Q Consensus 427 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 468 (541)
.+...|++++|...++++++..|.++..+..++.++.+.|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 899999999999999999999999999999999999888875
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.76 E-value=4.5e-08 Score=81.12 Aligned_cols=105 Identities=11% Similarity=0.024 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 048358 350 DITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSS 427 (541)
Q Consensus 350 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 427 (541)
...+..+...+...|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..|++. .+.| +...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3445555555666666666666666665532 334555555566666666666666655554 3333 34555555555
Q ss_pred HhhcCCHHHHHHHHHHHhccCCCCcchHH
Q 048358 428 CRTYSNLEIAVIAMEHLLVLEPEDTGNYV 456 (541)
Q Consensus 428 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 456 (541)
+...|++++|+..|++++++.|.++..+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 117 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAM 117 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHH
Confidence 56666666666666666666555555443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.76 E-value=9.6e-08 Score=75.64 Aligned_cols=118 Identities=10% Similarity=0.046 Sum_probs=89.4
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 048358 348 PNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLL 425 (541)
Q Consensus 348 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 425 (541)
.+...+..+...+...|++++|...|++..+. .+.+...+..+...+...|++++|.+.+++. ...| +...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 34456666677777777777777777777653 2445666777777777778888887777776 3334 567788888
Q ss_pred HHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 048358 426 SSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGR 467 (541)
Q Consensus 426 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 467 (541)
.++...|++++|+..++++++..|.+...+..++.++.+.|+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 888999999999999999999999988899999988887764
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.7e-08 Score=82.00 Aligned_cols=117 Identities=9% Similarity=-0.021 Sum_probs=92.4
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 048358 337 LFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMK 415 (541)
Q Consensus 337 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 415 (541)
.|+++.... +.+...+..+...+...|++++|+..|+.+.... +.+...|..+..+|...|++++|+..|++. .+.
T Consensus 9 ~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 9 TIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp SHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 345555443 3345567777888888999999999999888753 557778888899999999999999999887 444
Q ss_pred C-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHH
Q 048358 416 P-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYV 456 (541)
Q Consensus 416 p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 456 (541)
| +...+..+..++...|++++|+..|+++++..|+++....
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 5 5677888888999999999999999999999988776543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.76 E-value=5.8e-08 Score=80.43 Aligned_cols=126 Identities=13% Similarity=0.079 Sum_probs=106.7
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 048358 386 IEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYA 463 (541)
Q Consensus 386 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 463 (541)
...+..+...+...|++++|...|++. ...| +..++..+...+...|++++|+..++++++..|.++..+..++.++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 455778888999999999999999987 3344 67888889999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHH--HHHHHhcccCCcccccc
Q 048358 464 KHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLEL--LALHQDRAKDVIDIMYE 537 (541)
Q Consensus 464 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~--~~~~~~~~~~a~~~~~~ 537 (541)
+.|++++|...+++..+. +|++..++..++. .+...|+.++|++.+.+
T Consensus 93 ~~~~~~~A~~~~~~a~~~--------------------------~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKV--------------------------KPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 142 (166)
T ss_dssp HTTCHHHHHHHHHHHHHH--------------------------STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHh--------------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 999999999999998763 5666677644444 47788888888776654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.75 E-value=7.4e-08 Score=90.17 Aligned_cols=145 Identities=6% Similarity=-0.021 Sum_probs=117.3
Q ss_pred CHHHHHHHHHccCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---------------HHHHHHHHHHH
Q 048358 299 CINQASQLFDQMVE--R-DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPN---------------DITFIGLLSAC 360 (541)
Q Consensus 299 ~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~---------------~~~~~~l~~~~ 360 (541)
++++|...|+...+ | +...+..+...|.+.|++++|+..|++..... +.+ ...+..+..++
T Consensus 128 ~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 206 (336)
T 1p5q_A 128 SFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMCH 206 (336)
T ss_dssp EEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 34445544544432 2 45678889999999999999999999998864 333 47899999999
Q ss_pred hccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHH-
Q 048358 361 AHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIA- 437 (541)
Q Consensus 361 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a- 437 (541)
.+.|++++|+..++++.+.. +.+...|..+..+|...|++++|+..|++. .+.| +...+..+..++...|+.++|
T Consensus 207 ~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 207 LKLQAFSAAIESCNKALELD--SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999853 567888999999999999999999999988 5556 567888888889999999988
Q ss_pred HHHHHHHhc
Q 048358 438 VIAMEHLLV 446 (541)
Q Consensus 438 ~~~~~~~~~ 446 (541)
...++++.+
T Consensus 285 ~~~~~~~~~ 293 (336)
T 1p5q_A 285 KKLYANMFE 293 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 456666654
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.2e-07 Score=76.64 Aligned_cols=97 Identities=13% Similarity=0.056 Sum_probs=71.2
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHH
Q 048358 384 HKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPD----AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLL 458 (541)
Q Consensus 384 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 458 (541)
.+...+..+...+...|++++|.+.|++. ...|+ ...+..+...+...|++++|+..++++++..|.++..+..+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 34556666777777777777777777766 55565 46666677777777888888888888877777777777778
Q ss_pred HHHHHhcCCHHHHHHHHHHhhh
Q 048358 459 SNIYAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 459 ~~~~~~~g~~~~A~~~~~~m~~ 480 (541)
+.++...|++++|...+++..+
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888888888887777655
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.74 E-value=2.8e-07 Score=71.05 Aligned_cols=95 Identities=14% Similarity=0.119 Sum_probs=66.2
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 048358 386 IEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYA 463 (541)
Q Consensus 386 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 463 (541)
...+..+...+...|++++|...|++. ...| +...+..+...+...|++++|...++++++..|.++..+..++.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 344566666666777777777777665 2233 55666666667777777777777777777777777777777777777
Q ss_pred hcCCHHHHHHHHHHhhh
Q 048358 464 KHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 464 ~~g~~~~A~~~~~~m~~ 480 (541)
..|++++|...+++..+
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 77777777777777654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.5e-07 Score=71.84 Aligned_cols=99 Identities=13% Similarity=0.006 Sum_probs=88.4
Q ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEc
Q 048358 416 PDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVN 495 (541)
Q Consensus 416 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~ 495 (541)
++...+..+...+...|++++|+..++++++..|.++..+..++.++.+.|++++|.+.+++..+.
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------------- 67 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY-------------- 67 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--------------
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------------
Confidence 345678888889999999999999999999999999999999999999999999999999998763
Q ss_pred CEEEEEEeCCCCCCCh------hHHHHHHHHHHHHHhcccCCcccccccCC
Q 048358 496 NEVQEFVSGDDTKPFL------KDIFWLLELLALHQDRAKDVIDIMYEDIG 540 (541)
Q Consensus 496 ~~~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~i~ 540 (541)
+|++ ..++..++.++..+|+.++|++.+++...
T Consensus 68 ------------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 106 (111)
T 2l6j_A 68 ------------TSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELPE 106 (111)
T ss_dssp ------------CSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSSCSS
T ss_pred ------------CCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHHhHH
Confidence 4555 78899999999999999999998887643
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.1e-07 Score=79.97 Aligned_cols=118 Identities=10% Similarity=0.125 Sum_probs=73.5
Q ss_pred ccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HhhcCCH--HH
Q 048358 362 HTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSS-CRTYSNL--EI 436 (541)
Q Consensus 362 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~-~~~~~~~--~~ 436 (541)
..|++++|...++...+.. +.+...|..+...|...|++++|...|++. ...| +...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 4456666666666665532 345556666666666667777776666665 2223 44555556666 5566776 77
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 437 AVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 437 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
|+..++++++.+|.++..+..++.+|...|++++|...++++.+.
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 777777777777777777777777777777777777777776654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.73 E-value=2e-06 Score=78.81 Aligned_cols=159 Identities=9% Similarity=0.008 Sum_probs=120.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHccCCC---Chh------HHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHH
Q 048358 289 ALIEMYIKCGCINQASQLFDQMVER---DVV------SWSTVIGGLANHGKAHKAIHLFHEMQRLKVP-PN----DITFI 354 (541)
Q Consensus 289 ~l~~~~~~~g~~~~A~~~~~~~~~~---~~~------~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~ 354 (541)
..+..+...|++++|..++++..+. +.. .+..+...+...+++++|+..|++....... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3467788999999999999887442 111 2334666777788999999999999874322 22 23688
Q ss_pred HHHHHHhccCcHHHHHHHHHHhhhhc----CCCC-cHhHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHH
Q 048358 355 GLLSACAHTGFWNEGLMYFDSMKRDH----HIEH-KIEHYGCLVDLLGRAGRLDQALNIIEEM-------PMKPD-AKIW 421 (541)
Q Consensus 355 ~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~ 421 (541)
.+..+|...|++++|...|+++.+.. +..+ ...++..+...|.+.|++++|++.+++. +..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 89999999999999999999987421 1112 2347888999999999999999998876 12222 6788
Q ss_pred HHHHHHHhhcC-CHHHHHHHHHHHhcc
Q 048358 422 GSLLSSCRTYS-NLEIAVIAMEHLLVL 447 (541)
Q Consensus 422 ~~l~~~~~~~~-~~~~a~~~~~~~~~~ 447 (541)
..+..++.+.| ++++|...+++++++
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 88999999999 579999999998863
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.73 E-value=2.2e-08 Score=78.03 Aligned_cols=94 Identities=16% Similarity=0.093 Sum_probs=80.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 048358 388 HYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKH 465 (541)
Q Consensus 388 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 465 (541)
.+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|.++..+..++.+|.+.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4566778888999999999999887 4455 6788888888899999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhhC
Q 048358 466 GRWEDVSRMRKLIRSK 481 (541)
Q Consensus 466 g~~~~A~~~~~~m~~~ 481 (541)
|++++|...+++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999988764
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.70 E-value=9.3e-09 Score=81.04 Aligned_cols=103 Identities=9% Similarity=0.079 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCE
Q 048358 418 AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNE 497 (541)
Q Consensus 418 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~ 497 (541)
...+..+...+.+.|++++|+..|+++++++|.++.+|..++.+|.+.|++++|++.+++..+.......
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~---------- 77 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRA---------- 77 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccch----------
Confidence 3567788889999999999999999999999999999999999999999999999999998764321111
Q ss_pred EEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCcccccccC
Q 048358 498 VQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMYEDI 539 (541)
Q Consensus 498 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~i 539 (541)
.++....++..+|.++..+|+.++|++.+++++
T Consensus 78 ---------~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal 110 (127)
T 4gcn_A 78 ---------DYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSL 110 (127)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---------hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 123346788999999999999999999887765
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.3e-07 Score=75.44 Aligned_cols=99 Identities=10% Similarity=-0.001 Sum_probs=83.0
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 048358 383 EHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSN 460 (541)
Q Consensus 383 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 460 (541)
+.+...+..+...+...|++++|...|++. ...| +...|..+..++...|++++|+..++++++.+|.++..+..++.
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 345677788888888888888888888876 3344 56778888888899999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHhhhC
Q 048358 461 IYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 461 ~~~~~g~~~~A~~~~~~m~~~ 481 (541)
+|...|++++|...+++..+.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 999999999999999988764
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.69 E-value=9.4e-07 Score=80.98 Aligned_cols=163 Identities=9% Similarity=-0.001 Sum_probs=120.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHccCC--C-Ch------hHHHHHHHHHHhcCChHHHHHHHHHHHhCCC---CCC--H
Q 048358 285 VICNALIEMYIKCGCINQASQLFDQMVE--R-DV------VSWSTVIGGLANHGKAHKAIHLFHEMQRLKV---PPN--D 350 (541)
Q Consensus 285 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---~p~--~ 350 (541)
..+...+..+...|++++|.+.+.+..+ + .. ..+..+...+...|++++|+..+++..+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3455567788889999999988876522 1 11 2244456667788999999999999876421 122 3
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhh---hhcCCCC--cHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-------C
Q 048358 351 ITFIGLLSACAHTGFWNEGLMYFDSMK---RDHHIEH--KIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-------D 417 (541)
Q Consensus 351 ~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-------~ 417 (541)
.+++.+...|...|++++|...|++.. +..+..+ ...++..+...|...|++++|+..+++. .+.+ -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 478888999999999999999999887 3221111 1257889999999999999999999876 1111 2
Q ss_pred HHHHHHHHHHHhhcCCHHHH-HHHHHHHhcc
Q 048358 418 AKIWGSLLSSCRTYSNLEIA-VIAMEHLLVL 447 (541)
Q Consensus 418 ~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~~ 447 (541)
..+|..+...+...|++++| ...+++++.+
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 67788888999999999999 7778887753
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.69 E-value=1.2e-07 Score=86.40 Aligned_cols=193 Identities=7% Similarity=-0.089 Sum_probs=126.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHH
Q 048358 314 DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLV 393 (541)
Q Consensus 314 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 393 (541)
+...+..+...+...|++++|+..|++..... +.+...+..+..++...|++++|+..++...+. .+.+...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 34566777788888888888888888887764 446777778888888888888888888888763 355667778888
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHH
Q 048358 394 DLLGRAGRLDQALNIIEEM-PMKPDA-KIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDV 471 (541)
Q Consensus 394 ~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 471 (541)
.+|...|++++|...|++. ...|+. ..+...+....+ ..++...........|.++.....+...+ .|++++|
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A 154 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR---IAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERE 154 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH---HHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHH
Confidence 8888888888888888776 222311 011111111111 11112222222234466666666665543 5777777
Q ss_pred HHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHH-hcccCCcccccccCC
Q 048358 472 SRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQ-DRAKDVIDIMYEDIG 540 (541)
Q Consensus 472 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~i~ 540 (541)
.+.+++.. +++|++......++.++... ++.++|.+.+.++++
T Consensus 155 ~~~~~~al--------------------------~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 155 LEECQRNH--------------------------EGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HTTTSGGG--------------------------TTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhhh--------------------------ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 76665543 35788888888888888877 677888887777654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.68 E-value=5e-08 Score=78.58 Aligned_cols=108 Identities=13% Similarity=0.026 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 048358 350 DITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSS 427 (541)
Q Consensus 350 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 427 (541)
...+..+...+...|++++|+..|+.+.... |.+...|..+..+|.+.|++++|+..|++. ...| +...+..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 3455666777788888888888888887743 556777888888888888888888888877 3444 45677778888
Q ss_pred HhhcCCHHHHHHHHHHHhccCCCCcchHHHHH
Q 048358 428 CRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLS 459 (541)
Q Consensus 428 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 459 (541)
+...|++++|+..|+++++..|.++.......
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALAAAQPAHEALAA 127 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 88999999999999999998888776655443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.5e-07 Score=78.96 Aligned_cols=127 Identities=13% Similarity=0.158 Sum_probs=102.1
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHH-HHhcCCH--
Q 048358 326 ANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDL-LGRAGRL-- 402 (541)
Q Consensus 326 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~-- 402 (541)
...|++++|...+++..+.. +.+...+..+...|...|++++|...|++..+.. +.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 34678888999998887765 5677888889999999999999999999988753 4567778888888 7788998
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchH
Q 048358 403 DQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNY 455 (541)
Q Consensus 403 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 455 (541)
++|...+++. ...| +...+..+...+...|++++|+..++++++..|+++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 9999999887 4445 567888888889999999999999999999999886544
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=9.8e-08 Score=74.33 Aligned_cols=99 Identities=13% Similarity=0.129 Sum_probs=82.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHh
Q 048358 352 TFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCR 429 (541)
Q Consensus 352 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 429 (541)
.+..+...+...|++++|+..|+...+.. +.+...|..+..++...|++++|+..|++. .+.| +...+..+..++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 45667778889999999999999999853 567888999999999999999999999988 5556 5678888999999
Q ss_pred hcCCHHHHHHHHHHHhccCCCCc
Q 048358 430 TYSNLEIAVIAMEHLLVLEPEDT 452 (541)
Q Consensus 430 ~~~~~~~a~~~~~~~~~~~~~~~ 452 (541)
..|++++|+..++++++.+|.+.
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHC------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCC
Confidence 99999999999999999998764
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.65 E-value=4.9e-07 Score=77.63 Aligned_cols=153 Identities=13% Similarity=0.038 Sum_probs=83.4
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhc---CC-CCcHhHHHHHHHHHHhcCCH
Q 048358 327 NHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDH---HI-EHKIEHYGCLVDLLGRAGRL 402 (541)
Q Consensus 327 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~-~~~~~~~~~l~~~~~~~g~~ 402 (541)
..|++++|.+.++.+... .......+..+...+...|++++|...+++..... +. +....++..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 345555655533333221 11233455555555666666666666665554410 11 11234455666666666666
Q ss_pred HHHHHHHHhC-CC---CC-C----HHHHHHHHHHHhhcCCHHHHHHHHHHHhccC--CCC----cchHHHHHHHHHhcCC
Q 048358 403 DQALNIIEEM-PM---KP-D----AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLE--PED----TGNYVLLSNIYAKHGR 467 (541)
Q Consensus 403 ~~A~~~~~~~-~~---~p-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~----~~~~~~l~~~~~~~g~ 467 (541)
++|.+.+++. .. .+ + ...+..+...+...|++++|...++++++.. ..+ ..++..++.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 6666666554 10 11 1 2345556666777777777777777776543 111 2235677777888888
Q ss_pred HHHHHHHHHHhhh
Q 048358 468 WEDVSRMRKLIRS 480 (541)
Q Consensus 468 ~~~A~~~~~~m~~ 480 (541)
+++|.+.+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888777776654
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.65 E-value=2.2e-07 Score=72.89 Aligned_cols=111 Identities=7% Similarity=-0.008 Sum_probs=83.4
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 048358 351 ITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSC 428 (541)
Q Consensus 351 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 428 (541)
..+..+...+...|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..+++. .+.| +...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 455666677777788888888888777642 456677778888888888888888888776 4445 467778888888
Q ss_pred hhcCCHHHHHHHHHHHhccC------CCCcchHHHHHHHHH
Q 048358 429 RTYSNLEIAVIAMEHLLVLE------PEDTGNYVLLSNIYA 463 (541)
Q Consensus 429 ~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~ 463 (541)
...|++++|+..++++++.+ |.++..+..+..+..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 88888999999998888888 777777766665543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.64 E-value=1.9e-08 Score=86.41 Aligned_cols=97 Identities=12% Similarity=-0.015 Sum_probs=74.6
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 048358 386 IEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYA 463 (541)
Q Consensus 386 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 463 (541)
...|..+..+|.+.|++++|+..+++. ...| +...+..+..++...|++++|+..|+++++..|.++.++..++.++.
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 356778888889999999999988887 3344 57788888899999999999999999999999999999999999999
Q ss_pred hcCCHHHHH-HHHHHhhhCC
Q 048358 464 KHGRWEDVS-RMRKLIRSKS 482 (541)
Q Consensus 464 ~~g~~~~A~-~~~~~m~~~~ 482 (541)
..|+.+++. ..++.|...+
T Consensus 168 ~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 168 KLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 998888877 5566665443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.9e-07 Score=71.27 Aligned_cols=99 Identities=13% Similarity=0.140 Sum_probs=74.3
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC--CcchHHHHHH
Q 048358 385 KIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPE--DTGNYVLLSN 460 (541)
Q Consensus 385 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~ 460 (541)
+...+..+...+...|++++|...+++. ...| +...+..+...+...|++++|+..++++++..|. +...+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3445566677777777777777777766 2233 5566777777788888888888888888888888 8888888888
Q ss_pred HHHhc-CCHHHHHHHHHHhhhCCC
Q 048358 461 IYAKH-GRWEDVSRMRKLIRSKSM 483 (541)
Q Consensus 461 ~~~~~-g~~~~A~~~~~~m~~~~~ 483 (541)
++.+. |++++|.+.+++......
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhccc
Confidence 88888 888888888888776543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.63 E-value=7.7e-07 Score=79.10 Aligned_cols=134 Identities=13% Similarity=-0.001 Sum_probs=75.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCc--HhHHHHHHHHHH
Q 048358 320 TVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHK--IEHYGCLVDLLG 397 (541)
Q Consensus 320 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~ 397 (541)
.+...+...|++++|.++|..+...+ |+......+...+.+.+++++|+..|+...+. ..|. ...+..+..++.
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~--~d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW--PDKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC--SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc--CCcccHHHHHHHHHHHHH
Confidence 34455666677777777666665543 43334444445566667777777777644431 0111 224555666666
Q ss_pred hcCCHHHHHHHHHhC--C-CCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHH
Q 048358 398 RAGRLDQALNIIEEM--P-MKPD--AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLL 458 (541)
Q Consensus 398 ~~g~~~~A~~~~~~~--~-~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 458 (541)
+.|++++|+..|++. + ..|. .........++.+.|+.++|...|+++.+.+|. +.++..|
T Consensus 183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 677777777766665 1 1132 234455555566677777777777777766666 5444444
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=6.6e-06 Score=75.69 Aligned_cols=227 Identities=12% Similarity=0.070 Sum_probs=108.3
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHccC-ChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhc-C-
Q 048358 223 GYTHIGSYAEALDVFRQMQMVGIEPDE-ISIVSVLPACAQLG-SLELGEWIHMYCDKNHLLRRTVICNALIEMYIKC-G- 298 (541)
Q Consensus 223 ~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g- 298 (541)
...+.+..++|++++.+++.. .|+. ..++.--..+...| .++++..+++.+.... +.+..+|+.-..++.+. +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCC
Confidence 334444556777777777765 3433 33444444444444 3566666666555544 22344454444444443 4
Q ss_pred CHHHHHHHHHccCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 048358 299 CINQASQLFDQMVER---DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDS 375 (541)
Q Consensus 299 ~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 375 (541)
++++++++++.+.+. |..+|+.-.-.+...+.++. . ....+.++++.+++
T Consensus 140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~--------------~-------------~~~~~~eELe~~~k 192 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGR--------------I-------------SEAQWGSELDWCNE 192 (349)
T ss_dssp CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTC--------------C-------------CHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccc--------------c-------------chhhHHHHHHHHHH
Confidence 455555555555442 22333333333333232320 0 00001144444444
Q ss_pred hhhhcCCCCcHhHHHHHHHHHHhcCC-------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCH------------
Q 048358 376 MKRDHHIEHKIEHYGCLVDLLGRAGR-------LDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNL------------ 434 (541)
Q Consensus 376 ~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~------------ 434 (541)
+.+.+ +.|...|+.....+.+.++ ++++++.++++ ...| |...|+.+-..+.+.|..
T Consensus 193 ~I~~d--p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~ 270 (349)
T 3q7a_A 193 MLRVD--GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYT 270 (349)
T ss_dssp HHHHC--TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGT
T ss_pred HHHhC--CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccc
Confidence 44432 3344444444444444443 34445444443 2233 344444444444333321
Q ss_pred --------HHHHHHHHHHhccC------CCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 435 --------EIAVIAMEHLLVLE------PEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 435 --------~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
.........+.... +.++.++..|+++|...|+.++|.++++.+.++
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 271 ASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp C--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 22333333333222 567778889999999999999999999998644
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.3e-07 Score=74.36 Aligned_cols=95 Identities=9% Similarity=0.010 Sum_probs=68.8
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcc-------hHH
Q 048358 386 IEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTG-------NYV 456 (541)
Q Consensus 386 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~ 456 (541)
...+..+...+.+.|++++|++.|++. .+.| +...|..+..+|...|++++|+..++++++++|.+.. +|.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 344666777777778888887777776 4445 4567777777788888888888888888877765543 566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhh
Q 048358 457 LLSNIYAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 457 ~l~~~~~~~g~~~~A~~~~~~m~~ 480 (541)
.++.++...|++++|++.+++...
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 677777788888888888877655
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.62 E-value=6.7e-07 Score=79.46 Aligned_cols=183 Identities=8% Similarity=0.011 Sum_probs=134.9
Q ss_pred hcCCHHHHHHHHHccCC--C-ChhHHHHH-------HHHHHhcCChHHHHHHHHHHHhCCCCCCH---------------
Q 048358 296 KCGCINQASQLFDQMVE--R-DVVSWSTV-------IGGLANHGKAHKAIHLFHEMQRLKVPPND--------------- 350 (541)
Q Consensus 296 ~~g~~~~A~~~~~~~~~--~-~~~~~~~l-------~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--------------- 350 (541)
..++...|.+.|.++.. | ....|..+ ...+...++..+++..++.-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 56788888888887744 2 44567666 4555555555566555555443 22221
Q ss_pred -------HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH----H
Q 048358 351 -------ITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKPDA----K 419 (541)
Q Consensus 351 -------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~ 419 (541)
.....+...+...|++++|.++|+.+... .|+......+...+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 22344567788899999999999999863 244336667777899999999999999987434433 4
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHhccC--CC-CcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 048358 420 IWGSLLSSCRTYSNLEIAVIAMEHLLVLE--PE-DTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSM 483 (541)
Q Consensus 420 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 483 (541)
.+..+..++...|++++|+..|+++.... |. .+......+.++.+.|+.++|..+|+++.....
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 67778888999999999999999998533 33 456888999999999999999999999987643
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.61 E-value=8.3e-08 Score=93.93 Aligned_cols=127 Identities=10% Similarity=0.060 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCc---------------HhHHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 048358 350 DITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHK---------------IEHYGCLVDLLGRAGRLDQALNIIEEM-P 413 (541)
Q Consensus 350 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 413 (541)
...+..+...+.+.|+++.|+..|++..+.. +.+ ...|..+..+|.+.|++++|+..+++. .
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 4456666777777777777777777777642 222 355666666777777777777776665 3
Q ss_pred CCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHH-HHHHh
Q 048358 414 MKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSR-MRKLI 478 (541)
Q Consensus 414 ~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~m 478 (541)
+.| +...|..+..+|...|++++|+..|+++++++|.+..++..++.++.+.|++++|.+ .++.|
T Consensus 346 ~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 346 LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 456666666667777777777777777777777777777777777777766666653 34444
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.61 E-value=4.7e-07 Score=77.74 Aligned_cols=152 Identities=12% Similarity=-0.057 Sum_probs=88.3
Q ss_pred hcCCHHHHHH---HHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHh----CCCC-CCHHHHHHHHHHHhccCcHH
Q 048358 296 KCGCINQASQ---LFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQR----LKVP-PNDITFIGLLSACAHTGFWN 367 (541)
Q Consensus 296 ~~g~~~~A~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~----~~~~-p~~~~~~~l~~~~~~~g~~~ 367 (541)
..|++++|.+ .+..-......++..+...+...|++++|...+++... .+.+ ....++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455666665 44332223344566666666666666666666666544 1111 12345566666777777777
Q ss_pred HHHHHHHHhhhh---cCCCC--cHhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHhhcCCH
Q 048358 368 EGLMYFDSMKRD---HHIEH--KIEHYGCLVDLLGRAGRLDQALNIIEEM----PMKPD----AKIWGSLLSSCRTYSNL 434 (541)
Q Consensus 368 ~a~~~~~~~~~~---~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~~~~ 434 (541)
+|...+++.... .+-.+ ....+..+...+...|++++|...+++. ...++ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 777777766543 11111 2344666777777777877777777665 11111 23356666777888888
Q ss_pred HHHHHHHHHHhcc
Q 048358 435 EIAVIAMEHLLVL 447 (541)
Q Consensus 435 ~~a~~~~~~~~~~ 447 (541)
++|...+++++++
T Consensus 164 ~~A~~~~~~al~~ 176 (203)
T 3gw4_A 164 LEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888877764
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.60 E-value=8.8e-07 Score=68.14 Aligned_cols=111 Identities=14% Similarity=0.051 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 048358 350 DITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSS 427 (541)
Q Consensus 350 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 427 (541)
...+..+...+...|++++|...|+...... +.+...+..+...+...|++++|...+++. ...| +...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 3456666777777788888888888777642 445667777788888888888888888776 3334 56777888888
Q ss_pred HhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 048358 428 CRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIY 462 (541)
Q Consensus 428 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 462 (541)
+...|++++|...++++++.+|.++..+..++.+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 88899999999999999988888887777776654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=6.8e-07 Score=89.46 Aligned_cols=173 Identities=9% Similarity=0.033 Sum_probs=140.4
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc----------HHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHh
Q 048358 329 GKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGF----------WNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGR 398 (541)
Q Consensus 329 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 398 (541)
...++|++.++++...+ +-+...|+.--.++...|+ ++++++.++.+.+.+ +.+..+|..-..++.+
T Consensus 43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLLSR 119 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH
Confidence 34567788888888765 4444555554445555555 899999999998854 6678888888888888
Q ss_pred cC--CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcC-CHHHHHHHHHHHhccCCCCcchHHHHHHHHHhc--------
Q 048358 399 AG--RLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYS-NLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKH-------- 465 (541)
Q Consensus 399 ~g--~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------- 465 (541)
.| +++++++.++++ ...| +..+|+.-..++.+.| .++++++.++++++.+|.+..+|...+.++.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 99 779999999998 4455 7788888888888888 899999999999999999999999999998874
Q ss_pred ------CCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccC
Q 048358 466 ------GRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKD 530 (541)
Q Consensus 466 ------g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 530 (541)
+.+++|.+.+++... .+|++.++|.-+++++...++.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~--------------------------~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFF--------------------------TDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHH--------------------------HCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHh--------------------------hCCCCccHHHHHHHHHhcCCCccc
Confidence 557888888887654 479999999999999999998777
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.60 E-value=1.6e-07 Score=92.32 Aligned_cols=119 Identities=13% Similarity=0.079 Sum_probs=84.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHH
Q 048358 392 LVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWE 469 (541)
Q Consensus 392 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 469 (541)
+...+.+.|++++|++.|++. ...| +..+|..+..++.+.|++++|+..++++++.+|.++.++..++.+|.+.|+++
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 344556677777777777766 3344 46777777777888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHH--HHHHhcccCCccccc
Q 048358 470 DVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELL--ALHQDRAKDVIDIMY 536 (541)
Q Consensus 470 ~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 536 (541)
+|.+.+++..+. +|++..++..++.+ +..+|+.++|++.++
T Consensus 92 eA~~~~~~al~~--------------------------~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKV--------------------------KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHH--------------------------STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHh--------------------------CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 888888877652 46666677777777 677788888887776
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.60 E-value=4.7e-07 Score=74.86 Aligned_cols=95 Identities=8% Similarity=0.051 Sum_probs=49.1
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 048358 386 IEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYA 463 (541)
Q Consensus 386 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 463 (541)
...+..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|.++..|..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 334444555555555555555555544 2223 34445555555555555555555555555555555555555555555
Q ss_pred hcCCHHHHHHHHHHhhh
Q 048358 464 KHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 464 ~~g~~~~A~~~~~~m~~ 480 (541)
+.|++++|...+++..+
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 55555555555555443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=4.3e-05 Score=70.32 Aligned_cols=248 Identities=12% Similarity=0.013 Sum_probs=154.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCChHHHHHHHHHHH
Q 048358 185 AWNNLISGYARLGQMKKARMLFDKMPY---TTIVSWTAMISGYTHIG-SYAEALDVFRQMQMVGIEPDEISIVSVLPACA 260 (541)
Q Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 260 (541)
.++.+.....+.+..++|+++++.+.. .+..+|+.--.++...| .+++++++++.++... +-+...|+.-...+.
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 344444555556667889999998864 34467888778888888 5999999999999874 446666776666666
Q ss_pred cc-C-ChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 048358 261 QL-G-SLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLF 338 (541)
Q Consensus 261 ~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 338 (541)
.. + +++.+..+++.+.+.. +.+..+|+.-.-++.+.|.++ ..+. ..+.++++.+
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~----------~~~~-------------~~~~eELe~~ 190 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLG----------RISE-------------AQWGSELDWC 190 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTT----------CCCH-------------HHHHHHHHHH
T ss_pred HhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccc----------ccch-------------hhHHHHHHHH
Confidence 65 6 8899999999988765 445667765554444444333 0000 1123455555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccCc-------HHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCH---------
Q 048358 339 HEMQRLKVPPNDITFIGLLSACAHTGF-------WNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRL--------- 402 (541)
Q Consensus 339 ~~m~~~~~~p~~~~~~~l~~~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------- 402 (541)
+++.+.. +-|...|+.....+.+.+. ++++++.+++..... +.|...|+.+-..+.+.|+.
T Consensus 191 ~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~--P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~ 267 (349)
T 3q7a_A 191 NEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI--PHNVSAWNYLRGFLKHFSLPLVPILPAIL 267 (349)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCSGGGHHHHG
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCCccccccccc
Confidence 5555544 3445555555555444443 566666666666532 45566666655555555543
Q ss_pred -----------HHHHHHHHhC-CC-------CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHh-ccCCCCcchHHHHHH
Q 048358 403 -----------DQALNIIEEM-PM-------KPDAKIWGSLLSSCRTYSNLEIAVIAMEHLL-VLEPEDTGNYVLLSN 460 (541)
Q Consensus 403 -----------~~A~~~~~~~-~~-------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~l~~ 460 (541)
.+..++..++ .. .+....+..++..|...|+.++|.++++.+. +.+|-....|...+.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 268 PYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp GGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred ccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 2333444444 11 2567788888888888899999999999986 567776666665544
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.58 E-value=4.5e-07 Score=71.38 Aligned_cols=117 Identities=11% Similarity=0.079 Sum_probs=92.9
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC-------cchHH
Q 048358 386 IEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPED-------TGNYV 456 (541)
Q Consensus 386 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~ 456 (541)
...+..+...+...|++++|...|++. ...| +...+..+...+...|++++|...++++++..|.+ +.++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 455677778888888888888888876 3333 56778888888889999999999999999887765 77899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhccc
Q 048358 457 LLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAK 529 (541)
Q Consensus 457 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 529 (541)
.++.++.+.|++++|.+.+++..+. .| ++.....++.++..+++.+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--------------------------~~-~~~~~~~l~~~~~~~~~~~ 129 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--------------------------HR-TPDVLKKCQQAEKILKEQE 129 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--------------------------CC-CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--------------------------CC-CHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999998763 34 3566777888877776543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.57 E-value=2.2e-07 Score=87.92 Aligned_cols=140 Identities=12% Similarity=0.031 Sum_probs=95.4
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHh
Q 048358 351 ITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKP-DAKIWGSLLSSCR 429 (541)
Q Consensus 351 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~ 429 (541)
..+..+...+.+.|++++|+..|++..+.. +... .....+++. ...| +..+|..+..++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~~----------~~~~~~~~~------~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGSR----------AAAEDADGA------KLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHHH----------HHSCHHHHG------GGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcCc----------cccChHHHH------HHHHHHHHHHHHHHHHHH
Confidence 445666666777777777777777666521 1100 000000000 1223 3466777777888
Q ss_pred hcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCC
Q 048358 430 TYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKP 509 (541)
Q Consensus 430 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 509 (541)
+.|++++|+..++++++.+|.++.+|..++.+|...|++++|...+++..+ ++|
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~--------------------------l~P 338 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE--------------------------IAP 338 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------------------------HCT
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH--------------------------hCC
Confidence 888888888888888888888888888888888888888888888888765 357
Q ss_pred ChhHHHHHHHHHHHHHhcccCCcccc
Q 048358 510 FLKDIFWLLELLALHQDRAKDVIDIM 535 (541)
Q Consensus 510 ~~~~~~~~l~~~~~~~~~~~~a~~~~ 535 (541)
++..++..|+.++..+++.+++....
T Consensus 339 ~~~~~~~~l~~~~~~~~~~~~a~k~~ 364 (370)
T 1ihg_A 339 EDKAIQAELLKVKQKIKAQKDKEKAA 364 (370)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888888777665444
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.56 E-value=4.9e-07 Score=71.18 Aligned_cols=90 Identities=14% Similarity=0.155 Sum_probs=59.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC---cchHHHHHHHH
Q 048358 391 CLVDLLGRAGRLDQALNIIEEM-PMKPDA----KIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPED---TGNYVLLSNIY 462 (541)
Q Consensus 391 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~ 462 (541)
.+...+...|++++|...|++. ...|+. ..+..+..++...|++++|+..++++++..|++ +.++..++.++
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3455566666666666666665 222321 355566666777777777777777777777776 55677777777
Q ss_pred HhcCCHHHHHHHHHHhhh
Q 048358 463 AKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 463 ~~~g~~~~A~~~~~~m~~ 480 (541)
.+.|++++|...++++..
T Consensus 87 ~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 777777777777777655
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.51 E-value=8.2e-07 Score=70.70 Aligned_cols=115 Identities=10% Similarity=-0.047 Sum_probs=84.4
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 048358 347 PPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSL 424 (541)
Q Consensus 347 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 424 (541)
+.+...+..+...+...|++++|...|+...... +.+...|..+...+...|++++|...+++. ...| +...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 3456677777777888888888888888877642 455677788888888888888888888776 3344 56777888
Q ss_pred HHHHhhcCCHHHHHHHHHHHhccCCC-----CcchHHHHHHHHH
Q 048358 425 LSSCRTYSNLEIAVIAMEHLLVLEPE-----DTGNYVLLSNIYA 463 (541)
Q Consensus 425 ~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~l~~~~~ 463 (541)
..++...|++++|+..++++++..|+ +......+..+..
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~ 127 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 127 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence 88888888889998888888887766 4555555544443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.9e-07 Score=72.24 Aligned_cols=82 Identities=20% Similarity=0.131 Sum_probs=60.7
Q ss_pred cCCHHHHHHHHHhC-CC---CC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHH
Q 048358 399 AGRLDQALNIIEEM-PM---KP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSR 473 (541)
Q Consensus 399 ~g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 473 (541)
.|++++|+..|++. .. .| +...+..+..++...|++++|+..++++++.+|.++.++..++.++.+.|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 46677777777766 43 24 346677777778888888888888888888888888888888888888888888888
Q ss_pred HHHHhhh
Q 048358 474 MRKLIRS 480 (541)
Q Consensus 474 ~~~~m~~ 480 (541)
.+++...
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887765
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.48 E-value=7e-07 Score=71.53 Aligned_cols=92 Identities=12% Similarity=0.009 Sum_probs=68.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCCC-------------HHHHHHHHHHHhhcCCHHHHHHHHHHHhcc-------C
Q 048358 390 GCLVDLLGRAGRLDQALNIIEEM-PMKPD-------------AKIWGSLLSSCRTYSNLEIAVIAMEHLLVL-------E 448 (541)
Q Consensus 390 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~ 448 (541)
......+...|++++|+..|++. .+.|+ ...|..+..++.+.|++++|+..+++++++ +
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 33444444555555555555544 22222 337888888888899999999998888888 9
Q ss_pred CCCcchH----HHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 449 PEDTGNY----VLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 449 ~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
|++...| +..+.++...|++++|+..|++..+.
T Consensus 95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9998899 99999999999999999999988664
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.48 E-value=1.3e-06 Score=85.53 Aligned_cols=130 Identities=7% Similarity=-0.045 Sum_probs=105.1
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---------------HHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 048358 314 DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPN---------------DITFIGLLSACAHTGFWNEGLMYFDSMKR 378 (541)
Q Consensus 314 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~---------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 378 (541)
....|..+...+.+.|++++|+..|++..+.. +.+ ...|..+..+|.+.|++++|+..++++.+
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 34578888999999999999999999998853 223 47888999999999999999999999998
Q ss_pred hcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHH-HHHHHhc
Q 048358 379 DHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVI-AMEHLLV 446 (541)
Q Consensus 379 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~ 446 (541)
.. +.+...|..+..+|...|++++|+..|++. .+.| +...+..+..++.+.++.+++.. .++++..
T Consensus 346 ~~--p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 346 LD--SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cC--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 53 567888999999999999999999999998 6677 45677778888888888887764 4555443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.47 E-value=2e-07 Score=74.74 Aligned_cols=103 Identities=8% Similarity=-0.025 Sum_probs=88.0
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC-------Ccc-----hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccC
Q 048358 419 KIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPE-------DTG-----NYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKT 486 (541)
Q Consensus 419 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~-----~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 486 (541)
..+......+.+.|++++|+..|+++++.+|. +.. .|..++.++.+.|++++|+..+++..+.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l----- 86 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY----- 86 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----
Confidence 34556667788999999999999999999998 333 8999999999999999999999998763
Q ss_pred CceeEEEEcCEEEEEEeCCCCCCChhHHH----HHHHHHHHHHhcccCCcccccccCC
Q 048358 487 PGCSLIEVNNEVQEFVSGDDTKPFLKDIF----WLLELLALHQDRAKDVIDIMYEDIG 540 (541)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~i~ 540 (541)
|-...+++|++..+| ..+|..+..+|++++|+..++++|+
T Consensus 87 --------------~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 87 --------------FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp --------------HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------hhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 112235799999999 9999999999999999999988763
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.46 E-value=2.7e-06 Score=68.59 Aligned_cols=113 Identities=13% Similarity=0.018 Sum_probs=84.9
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCc----HhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 048358 349 NDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHK----IEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWG 422 (541)
Q Consensus 349 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 422 (541)
+...+..+...+...|++++|...|++..+. .|+ ...|..+...|...|++++|+..+++. ...| +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 4556666777777777777777777777653 233 566777788888888888888888776 3344 567777
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 048358 423 SLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAK 464 (541)
Q Consensus 423 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 464 (541)
.+..++...|++++|...++++++..|.++..+..+..+..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 888888889999999999999999999888877777665443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.7e-06 Score=65.79 Aligned_cols=102 Identities=12% Similarity=0.067 Sum_probs=75.6
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHHHHHHH
Q 048358 349 NDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP---DAKIWGSL 424 (541)
Q Consensus 349 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l 424 (541)
+...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.+++. ...| +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 34556666777777788888888887777642 445666777788888888888888888776 3334 46777778
Q ss_pred HHHHhhc-CCHHHHHHHHHHHhccCCCCc
Q 048358 425 LSSCRTY-SNLEIAVIAMEHLLVLEPEDT 452 (541)
Q Consensus 425 ~~~~~~~-~~~~~a~~~~~~~~~~~~~~~ 452 (541)
...+... |++++|++.++++.+..|+++
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 8888888 888888888888888887754
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.45 E-value=3e-07 Score=86.09 Aligned_cols=114 Identities=6% Similarity=-0.078 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 048358 350 DITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKPDAKIWGSLLSSCR 429 (541)
Q Consensus 350 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 429 (541)
...+..+...+.+.|++++|+..|++.... .|+... +...|+.+++...+. ...|..+..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~-------~~~~~~~~~~~~~l~-------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFM-------FQLYGKYQDMALAVK-------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHH-------HTCCHHHHHHHHHHH-------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchh-------hhhcccHHHHHHHHH-------HHHHHHHHHHHH
Confidence 455667777888888888888888887764 243321 222333333333221 136667777777
Q ss_pred hcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048358 430 TYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 430 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 480 (541)
+.|++++|+..++++++.+|.+..+|..++.+|...|++++|...+++..+
T Consensus 242 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888888888888888888888778888888888888888888888877654
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=7.9e-05 Score=68.21 Aligned_cols=192 Identities=10% Similarity=0.035 Sum_probs=99.9
Q ss_pred hHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcC--CHHHHHHHHHccCC---CChhHHHHHHHHHHhcCC-hHHHHHHH
Q 048358 265 LELGEWIHMYCDKNHLLRRTVICNALIEMYIKCG--CINQASQLFDQMVE---RDVVSWSTVIGGLANHGK-AHKAIHLF 338 (541)
Q Consensus 265 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~-~~~a~~~~ 338 (541)
++.+..+++.+.... +-+..+|+.-.-++.+.| .++++..++..+.+ .|..+|+.-.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 345555555555544 234555555555555555 36666666666633 344555555555555565 46666776
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhcc--------------CcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhc-----
Q 048358 339 HEMQRLKVPPNDITFIGLLSACAHT--------------GFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRA----- 399 (541)
Q Consensus 339 ~~m~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 399 (541)
.++++.. +-|...|+.....+... +.++++++.+....... |.|...|+.+-..+.+.
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~--P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccCccc
Confidence 6666654 44555555444333322 34566666666666532 45555565444444443
Q ss_pred ------CCHHHHHHHHHhC-CCCCCHHHHHHHHH-----HHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHH
Q 048358 400 ------GRLDQALNIIEEM-PMKPDAKIWGSLLS-----SCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNI 461 (541)
Q Consensus 400 ------g~~~~A~~~~~~~-~~~p~~~~~~~l~~-----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 461 (541)
+.++++++.++++ ...||. .|..+.. +....|..++....+.++.+++|....-|..+...
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 2345555555555 334432 2221111 11234555566666666666666655555554443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.41 E-value=6.1e-07 Score=88.15 Aligned_cols=120 Identities=11% Similarity=0.056 Sum_probs=98.6
Q ss_pred HHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCC
Q 048358 356 LLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSN 433 (541)
Q Consensus 356 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~ 433 (541)
+...+...|++++|++.|++..+.. +.+...|..+..+|.+.|++++|++.+++. .+.| +...+..+..++...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 3445667899999999999888753 556788899999999999999999999887 5556 57888889999999999
Q ss_pred HHHHHHHHHHHhccCCCCcchHHHHHHH--HHhcCCHHHHHHHHHH
Q 048358 434 LEIAVIAMEHLLVLEPEDTGNYVLLSNI--YAKHGRWEDVSRMRKL 477 (541)
Q Consensus 434 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 477 (541)
+++|+..++++++..|.+...+..++.+ +.+.|++++|.+.+++
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999888 8889999999999884
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.41 E-value=2.2e-06 Score=81.03 Aligned_cols=139 Identities=10% Similarity=0.016 Sum_probs=108.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHH
Q 048358 315 VVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVD 394 (541)
Q Consensus 315 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 394 (541)
...+..+...+.+.|++++|+..|++..+.- ++.. .... .+..... -+.+...|..+..
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~~----------~~~~-------~~~~~~~--~~~~~~~~~nla~ 281 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGSR----------AAAE-------DADGAKL--QPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHH----------HHSC-------HHHHGGG--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcCc----------cccC-------hHHHHHH--HHHHHHHHHHHHH
Confidence 3467888889999999999999999887631 1100 0001 1111111 1235677889999
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHH
Q 048358 395 LLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVS 472 (541)
Q Consensus 395 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 472 (541)
+|.+.|++++|++.+++. ...| +...+..+..++...|++++|+..+++++++.|.+...+..+..++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987 6666 57888899999999999999999999999999999999999999999999888876
Q ss_pred HH
Q 048358 473 RM 474 (541)
Q Consensus 473 ~~ 474 (541)
+.
T Consensus 362 k~ 363 (370)
T 1ihg_A 362 KA 363 (370)
T ss_dssp HC
T ss_pred HH
Confidence 53
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.40 E-value=9.4e-07 Score=69.45 Aligned_cols=110 Identities=11% Similarity=0.017 Sum_probs=68.3
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC----CC----HHHHH
Q 048358 352 TFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMK----PD----AKIWG 422 (541)
Q Consensus 352 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~----p~----~~~~~ 422 (541)
.+..+...+...|+++.|...|+...... +.+...+..+...+...|++++|...+++. ... ++ ..++.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 44555555566666666666666665532 344555666666666666666666666655 111 12 55667
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 048358 423 SLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAK 464 (541)
Q Consensus 423 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 464 (541)
.+...+...|++++|...++++++..| ++.....+..+...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 777777888888888888888888776 46666665555443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=9.5e-05 Score=67.68 Aligned_cols=179 Identities=12% Similarity=0.078 Sum_probs=134.2
Q ss_pred HHHHHHHHHccCC---CChhHHHHHHHHHHhcC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc-HHHHHHHH
Q 048358 300 INQASQLFDQMVE---RDVVSWSTVIGGLANHG--KAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGF-WNEGLMYF 373 (541)
Q Consensus 300 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~-~~~a~~~~ 373 (541)
++++..+++.+.. .+..+|+.-.-.+...+ .+++++.++.++.+.. +-|...|+.-..++...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 5677777777743 46778888777777777 4899999999999986 6678888777777777777 68999999
Q ss_pred HHhhhhcCCCCcHhHHHHHHHHHHhc--------------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhc------
Q 048358 374 DSMKRDHHIEHKIEHYGCLVDLLGRA--------------GRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTY------ 431 (541)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~------ 431 (541)
+.+.+.+ +.|...|+.....+.+. +.++++++.+.+. ...| |...|+.+-..+.+.
T Consensus 169 ~~~I~~~--p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITRN--FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHC--SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHC--CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 9999864 66778888777776655 4578889888877 4455 677777666555544
Q ss_pred -----CCHHHHHHHHHHHhccCCCCcchHHHHHHHH---HhcCCHHHHHHHHHHhhhC
Q 048358 432 -----SNLEIAVIAMEHLLVLEPEDTGNYVLLSNIY---AKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 432 -----~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~m~~~ 481 (541)
+.++++++.++++++..|++.-.+..++... ...|..++....+.++.+.
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 4689999999999999999854444443322 2457788888888888763
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.36 E-value=6.1e-06 Score=64.71 Aligned_cols=105 Identities=11% Similarity=-0.005 Sum_probs=71.6
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcH---hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHH
Q 048358 354 IGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKI---EHYGCLVDLLGRAGRLDQALNIIEEM-PMKPD----AKIWGSLL 425 (541)
Q Consensus 354 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~ 425 (541)
..+...+...|++++|...|+.+.+.. +.+. ..+..+..++.+.|++++|...|++. ...|+ ...+..+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 344556666777777777777776642 2222 45666777777778888887777776 33333 45667777
Q ss_pred HHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 048358 426 SSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSN 460 (541)
Q Consensus 426 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 460 (541)
.++...|++++|+..++++++..|+++........
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~ 118 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQER 118 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 77888888888888888888888887655544443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.2e-06 Score=82.00 Aligned_cols=148 Identities=11% Similarity=0.026 Sum_probs=87.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHH
Q 048358 315 VVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVD 394 (541)
Q Consensus 315 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 394 (541)
...+..+...+.+.|++++|...|++.... .|+... +...+++.++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 446777888888999999999999998875 354432 234445554433221 236788999
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHH-hcCCHHHH
Q 048358 395 LLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYA-KHGRWEDV 471 (541)
Q Consensus 395 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A 471 (541)
+|.+.|++++|+..+++. ...| +...|..+..++...|++++|+..|+++++++|.++.++..+..+.. ..+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887 4455 67889999999999999999999999999999999999999888844 45778888
Q ss_pred HHHHHHhhhCC
Q 048358 472 SRMRKLIRSKS 482 (541)
Q Consensus 472 ~~~~~~m~~~~ 482 (541)
..++++|....
T Consensus 319 ~~~~~~~l~~~ 329 (338)
T 2if4_A 319 KEMYKGIFKGK 329 (338)
T ss_dssp -----------
T ss_pred HHHHHHhhCCC
Confidence 88888887654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.6e-06 Score=71.43 Aligned_cols=79 Identities=15% Similarity=0.048 Sum_probs=64.6
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCc-chHHHHHHH
Q 048358 385 KIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDT-GNYVLLSNI 461 (541)
Q Consensus 385 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~ 461 (541)
+...|..+..+|.+.|++++|+..+++. .+.| +...|..+..++...|++++|+..|+++++++|.++ .....+..+
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 4567888899999999999999999887 4455 578888899999999999999999999999999987 445555544
Q ss_pred HH
Q 048358 462 YA 463 (541)
Q Consensus 462 ~~ 463 (541)
..
T Consensus 142 ~~ 143 (162)
T 3rkv_A 142 TE 143 (162)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.33 E-value=1e-05 Score=78.58 Aligned_cols=163 Identities=7% Similarity=-0.081 Sum_probs=99.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCH----HHHHHHHHHHhccCcHHHHHHHHHHhhhh----cCCCCcHhH
Q 048358 318 WSTVIGGLANHGKAHKAIHLFHEMQRLK-VPPND----ITFIGLLSACAHTGFWNEGLMYFDSMKRD----HHIEHKIEH 388 (541)
Q Consensus 318 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~ 388 (541)
+..+...|...|++++|.+++..+...- ..++. ...+.+...+...|+++.+..++...... ........+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4556666777777777777766654321 01111 12223333445567777777777665432 111223456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-----C--CCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccC---CCC----cc
Q 048358 389 YGCLVDLLGRAGRLDQALNIIEEM-----P--MKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLE---PED----TG 453 (541)
Q Consensus 389 ~~~l~~~~~~~g~~~~A~~~~~~~-----~--~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~----~~ 453 (541)
+..+...|...|++++|..++++. + .+| ...++..++..|...|++++|...+++++... +.+ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 677778888888888888777765 1 122 23566677777888888888888888777543 221 23
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048358 454 NYVLLSNIYAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 454 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 480 (541)
.+..++..+...|++++|...+.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 556667777778888888877766543
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.31 E-value=5.2e-06 Score=60.38 Aligned_cols=83 Identities=18% Similarity=0.222 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCE
Q 048358 418 AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNE 497 (541)
Q Consensus 418 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~ 497 (541)
...+..+...+...|++++|+..++++++..|.++..+..++.++.+.|++++|...+++..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~----------------- 71 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE----------------- 71 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-----------------
Confidence 345666666677777777777777777777777777777777777777777777777777654
Q ss_pred EEEEEeCCCCCCChhHHHHHHHHHHHHHh
Q 048358 498 VQEFVSGDDTKPFLKDIFWLLELLALHQD 526 (541)
Q Consensus 498 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 526 (541)
.+|++..++..++.++..+|
T Consensus 72 ---------~~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 72 ---------LDPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp ---------HCTTCHHHHHHHHHHHHHHC
T ss_pred ---------cCCCCHHHHHHHHHHHHhcC
Confidence 24666777777777766543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.30 E-value=2.5e-06 Score=69.81 Aligned_cols=129 Identities=14% Similarity=0.052 Sum_probs=78.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCc----HhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HH
Q 048358 352 TFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHK----IEHYGCLVDLLGRAGRLDQALNIIEEM----PMKPD----AK 419 (541)
Q Consensus 352 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~ 419 (541)
++..+...+...|++++|...+++......-.++ ..++..+...+...|++++|.+.+++. +..++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444455555555565555555554432100011 134555666666666666666666654 10111 34
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHhccCC------CCcchHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048358 420 IWGSLLSSCRTYSNLEIAVIAMEHLLVLEP------EDTGNYVLLSNIYAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 420 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 480 (541)
.+..+...+...|++++|...++++++..+ .....+..++.++...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 566666677788888888888888776431 1244677888888889999999988887654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=5.3e-05 Score=75.79 Aligned_cols=169 Identities=9% Similarity=0.093 Sum_probs=135.8
Q ss_pred CHHHHHHHHHccCC--C-ChhHHHHHHHHHHhcCC----------hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-
Q 048358 299 CINQASQLFDQMVE--R-DVVSWSTVIGGLANHGK----------AHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTG- 364 (541)
Q Consensus 299 ~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~----------~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g- 364 (541)
..++|.+.++.+.. | +..+|+.-..++...|+ ++++++.++++.+.. +-+..+|..-..++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 34567777777744 2 44567666666666666 899999999998876 667778887777788888
Q ss_pred -cHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhc---------
Q 048358 365 -FWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAG-RLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTY--------- 431 (541)
Q Consensus 365 -~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~--------- 431 (541)
+++++++.++++.+.. +.+...|+.-..++.+.| .++++++.++++ ...| +...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 7799999999999864 667888888888888888 899999999888 5566 678888877776553
Q ss_pred -----CCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHH
Q 048358 432 -----SNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWED 470 (541)
Q Consensus 432 -----~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 470 (541)
+.++++++.+++++..+|.+..+|..+...+.+.++.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 568999999999999999999999999999999888554
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.3e-06 Score=67.36 Aligned_cols=93 Identities=12% Similarity=0.078 Sum_probs=64.2
Q ss_pred cCcHHHHHHHHHHhhhhcC-CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHH
Q 048358 363 TGFWNEGLMYFDSMKRDHH-IEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVI 439 (541)
Q Consensus 363 ~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~ 439 (541)
.|++++|+..|++..+... -+.+...+..+..+|...|++++|++.|++. ...| +...+..+..++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 4667777777777765210 1334566777778888888888888888776 3344 46677777778888888888888
Q ss_pred HHHHHhccCCCCcchH
Q 048358 440 AMEHLLVLEPEDTGNY 455 (541)
Q Consensus 440 ~~~~~~~~~~~~~~~~ 455 (541)
.++++++..|.++...
T Consensus 83 ~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHCCCHHHH
T ss_pred HHHHHHHhCCCcHHHH
Confidence 8888888888776543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.18 E-value=7.1e-05 Score=72.61 Aligned_cols=192 Identities=9% Similarity=-0.013 Sum_probs=94.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCh----------------HHHHHHHHHHHccCChHHHHHHHHHHHHhCCC-cc
Q 048358 221 ISGYTHIGSYAEALDVFRQMQMVGIEPDE----------------ISIVSVLPACAQLGSLELGEWIHMYCDKNHLL-RR 283 (541)
Q Consensus 221 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~----------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~ 283 (541)
...+.+.|++++|++.|..+.+..-.... ..+..+...|...|++++|...+..+.+.... ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45677889999999999988876322111 12445555666666666666666555442111 11
Q ss_pred H----hHHHHHHHHHHhcCCHHHHHHHHHccCC--------C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHhC--CC--
Q 048358 284 T----VICNALIEMYIKCGCINQASQLFDQMVE--------R-DVVSWSTVIGGLANHGKAHKAIHLFHEMQRL--KV-- 346 (541)
Q Consensus 284 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~-- 346 (541)
. .+.+.+...+...|+++.|..++..... . -..++..+...|...|++++|..+++++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 1223333334445555555555544411 0 1224445555555556666666555554331 11
Q ss_pred CCC-HHHHHHHHHHHhccCcHHHHHHHHHHhhhhc---CCCCc--HhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 048358 347 PPN-DITFIGLLSACAHTGFWNEGLMYFDSMKRDH---HIEHK--IEHYGCLVDLLGRAGRLDQALNIIEEM 412 (541)
Q Consensus 347 ~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 412 (541)
++. ...+..++..|...|++++|..++++..... ..++. ...+..+...+...|++++|...|.+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 111 1244455555555566666655555544311 00111 123344444455555555555554443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.17 E-value=9.4e-07 Score=67.29 Aligned_cols=93 Identities=10% Similarity=-0.004 Sum_probs=75.2
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC------cchHH
Q 048358 385 KIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPED------TGNYV 456 (541)
Q Consensus 385 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~ 456 (541)
+...+..+...+.+.|++++|++.|++. ...| +...+..+..++...|++++|+..++++++..|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4566778888888899999999888887 3444 67788888888999999999999999999999998 77778
Q ss_pred HHHHHHHhcCCHHHHHHHHHH
Q 048358 457 LLSNIYAKHGRWEDVSRMRKL 477 (541)
Q Consensus 457 ~l~~~~~~~g~~~~A~~~~~~ 477 (541)
.++.++...|++++|...+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 888888888877766655444
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.15 E-value=2.1e-05 Score=76.76 Aligned_cols=123 Identities=7% Similarity=0.002 Sum_probs=96.0
Q ss_pred HHhccCcHHHHHHHHHHhhhhcC--CC---C-cHhHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-HHHHH
Q 048358 359 ACAHTGFWNEGLMYFDSMKRDHH--IE---H-KIEHYGCLVDLLGRAGRLDQALNIIEEM---------PMKPD-AKIWG 422 (541)
Q Consensus 359 ~~~~~g~~~~a~~~~~~~~~~~~--~~---~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~ 422 (541)
.+...|++++|+.++++...... +. | ...+++.|..+|...|++++|..++++. +..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35577889999888877765311 11 2 3467888999999999999999888775 23454 46788
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHhc-----cCCCCcc---hHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 423 SLLSSCRTYSNLEIAVIAMEHLLV-----LEPEDTG---NYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 423 ~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
.|...|...|++++|+.+++++++ ++|++|. ....+..++...|.+++|+.+++++++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999986 4677655 4457778888999999999999999874
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.13 E-value=5.6e-06 Score=80.80 Aligned_cols=125 Identities=9% Similarity=-0.033 Sum_probs=99.0
Q ss_pred HHHHhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhc-----cCCCCcc---hH
Q 048358 394 DLLGRAGRLDQALNIIEEM---------PMKPD-AKIWGSLLSSCRTYSNLEIAVIAMEHLLV-----LEPEDTG---NY 455 (541)
Q Consensus 394 ~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~---~~ 455 (541)
..+..+|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.+++++++ .+|++|. ++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 4566889999999988775 12343 46789999999999999999999999986 3455544 78
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCcccc
Q 048358 456 VLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIM 535 (541)
Q Consensus 456 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 535 (541)
+.|+.+|..+|++++|+.++++..+.-.. .-...||...+...+|+..+..++++++|...+
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~ 458 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLV------------------THGPSHPITKDLEAMRMQTEMELRMFRQNEFMY 458 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHH------------------HhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999998653110 011368999999999999999999988876655
Q ss_pred c
Q 048358 536 Y 536 (541)
Q Consensus 536 ~ 536 (541)
.
T Consensus 459 ~ 459 (490)
T 3n71_A 459 H 459 (490)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.11 E-value=1.3e-05 Score=65.39 Aligned_cols=131 Identities=11% Similarity=0.041 Sum_probs=71.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCC----cHhH
Q 048358 318 WSTVIGGLANHGKAHKAIHLFHEMQRLKV-PPN----DITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEH----KIEH 388 (541)
Q Consensus 318 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~ 388 (541)
+..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...++.......-.+ ....
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 34444445555555555555554433210 001 12455555566666666666666665543210001 1334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccC
Q 048358 389 YGCLVDLLGRAGRLDQALNIIEEM-------PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLE 448 (541)
Q Consensus 389 ~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 448 (541)
+..+...+...|++++|.+.+++. +..+ ...++..+...+...|++++|...++++++..
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 566666677777777777666654 1111 13456666677788888888888888877643
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.09 E-value=3.4e-06 Score=67.37 Aligned_cols=82 Identities=15% Similarity=0.178 Sum_probs=59.6
Q ss_pred CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCC----------HHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC-
Q 048358 400 GRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSN----------LEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHG- 466 (541)
Q Consensus 400 g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 466 (541)
+++++|++.++.. ...| +...|..+..++...++ +++|+..|+++++++|++..+|..++.+|...|
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence 3444555544444 2233 34444444444444433 679999999999999999999999999999875
Q ss_pred ----------CHHHHHHHHHHhhhC
Q 048358 467 ----------RWEDVSRMRKLIRSK 481 (541)
Q Consensus 467 ----------~~~~A~~~~~~m~~~ 481 (541)
++++|.+.|++..+.
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcchhhhhccHHHHHHHHHHHHHh
Confidence 899999999998774
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.06 E-value=2.2e-05 Score=58.35 Aligned_cols=65 Identities=20% Similarity=0.197 Sum_probs=59.2
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 417 DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 417 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
+...+..+...+...|++++|+..|+++++.+|.++.+|..++.+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56788888889999999999999999999999999999999999999999999999999987653
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.05 E-value=2.5e-05 Score=56.59 Aligned_cols=82 Identities=21% Similarity=0.314 Sum_probs=69.1
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 048358 385 KIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIY 462 (541)
Q Consensus 385 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 462 (541)
+...+..+...+...|++++|...|++. ...| +...+..+..++...|++++|+..++++++.+|.++..+..++.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 4566777888888899999999888877 3334 5678888888999999999999999999999999999999999888
Q ss_pred HhcC
Q 048358 463 AKHG 466 (541)
Q Consensus 463 ~~~g 466 (541)
.+.|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 7654
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.01 E-value=3.3e-05 Score=59.09 Aligned_cols=77 Identities=10% Similarity=0.082 Sum_probs=58.8
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 405 ALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 405 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
|++.|++. ...| +...+..+...+...|++++|+..++++++.+|.++..|..++.+|...|++++|...+++..+.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45555554 4444 56677777777888888888888888888888888888888888888888888888888877653
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.00 E-value=4.9e-06 Score=63.86 Aligned_cols=78 Identities=12% Similarity=0.064 Sum_probs=71.4
Q ss_pred HHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHH
Q 048358 436 IAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIF 515 (541)
Q Consensus 436 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 515 (541)
.|+..++++++.+|.++..+..++.+|...|++++|...+++... .+|++..++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--------------------------~~p~~~~~~ 56 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALD--------------------------FDPTYSVAW 56 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------------------------HCTTCHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH--------------------------HCCCcHHHH
Confidence 578899999999999999999999999999999999999999875 368888999
Q ss_pred HHHHHHHHHHhcccCCcccccccC
Q 048358 516 WLLELLALHQDRAKDVIDIMYEDI 539 (541)
Q Consensus 516 ~~l~~~~~~~~~~~~a~~~~~~~i 539 (541)
..++.+|..+|+.++|...+++++
T Consensus 57 ~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 57 KWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999999888765
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.99 E-value=1.5e-06 Score=69.48 Aligned_cols=86 Identities=8% Similarity=0.045 Sum_probs=75.5
Q ss_pred hhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCH----------HHHHHHHHHhhhCCCccCCceeEEEEcCEE
Q 048358 429 RTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRW----------EDVSRMRKLIRSKSMKKTPGCSLIEVNNEV 498 (541)
Q Consensus 429 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~ 498 (541)
.+.+.+++|+..++++++++|.++..|..++.++...|++ ++|+..|++..+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~------------------ 74 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL------------------ 74 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH------------------
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH------------------
Confidence 4567789999999999999999999999999999998875 588888888765
Q ss_pred EEEEeCCCCCCChhHHHHHHHHHHHHHh-----------cccCCcccccccCC
Q 048358 499 QEFVSGDDTKPFLKDIFWLLELLALHQD-----------RAKDVIDIMYEDIG 540 (541)
Q Consensus 499 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~~i~ 540 (541)
++|+...++..||++|..+| +.++|+..++++|+
T Consensus 75 --------ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 75 --------IDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp --------HCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred --------hCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH
Confidence 57999999999999999885 89999998888763
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00017 Score=52.32 Aligned_cols=68 Identities=15% Similarity=0.113 Sum_probs=59.2
Q ss_pred CCHHHHHHHHHHHhhcCC---HHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 048358 416 PDAKIWGSLLSSCRTYSN---LEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSM 483 (541)
Q Consensus 416 p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 483 (541)
++...+..+..++...++ .++|..+++++++.+|.++.++..++..+.+.|++++|...++++.+...
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 466777777777654444 79999999999999999999999999999999999999999999988754
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00015 Score=53.50 Aligned_cols=52 Identities=27% Similarity=0.409 Sum_probs=26.8
Q ss_pred HhhcCCHHHHHHHHHHHhccCCCCcc-hHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048358 428 CRTYSNLEIAVIAMEHLLVLEPEDTG-NYVLLSNIYAKHGRWEDVSRMRKLIR 479 (541)
Q Consensus 428 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~ 479 (541)
+...|++++|+..++++++.+|.++. .+..++.+|...|++++|...+++..
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 62 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44445555555555555555555554 55555555555555555555555544
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00042 Score=54.82 Aligned_cols=90 Identities=8% Similarity=-0.096 Sum_probs=50.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh---
Q 048358 392 LVDLLGRAGRLDQALNIIEEMPMKPDAKIWGSLLSSCRT----YSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAK--- 464 (541)
Q Consensus 392 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 464 (541)
+...|...+.+++|.++|++.-...+...+..+...|.. .+++++|+..|+++.+. .++..+..|+.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG 108 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCC
Confidence 444444444444455555444212344444455555544 56666666666666654 345566667777766
Q ss_pred -cCCHHHHHHHHHHhhhCCC
Q 048358 465 -HGRWEDVSRMRKLIRSKSM 483 (541)
Q Consensus 465 -~g~~~~A~~~~~~m~~~~~ 483 (541)
.+++++|...+++..+.|.
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTTC
T ss_pred CCcCHHHHHHHHHHHHHCCC
Confidence 6677777777776666553
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0012 Score=52.14 Aligned_cols=112 Identities=15% Similarity=-0.024 Sum_probs=91.4
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHh----cCCHHH
Q 048358 329 GKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGR----AGRLDQ 404 (541)
Q Consensus 329 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 404 (541)
+++++|..+|++..+.| .|+.. +...|...+.+++|.+.|++..+. .+...+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46789999999999887 44444 777788888888999999998874 466777888888887 789999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHhccCC
Q 048358 405 ALNIIEEMPMKPDAKIWGSLLSSCRT----YSNLEIAVIAMEHLLVLEP 449 (541)
Q Consensus 405 A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~ 449 (541)
|.++|++.-...+...+..|...|.. .++.++|+..|+++.+.+.
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999988333577888888888888 8999999999999988753
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00053 Score=65.85 Aligned_cols=116 Identities=12% Similarity=0.156 Sum_probs=87.6
Q ss_pred HHHHHhcCCHHHHHHHHHhC-C-----C---CCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhcc-----CCCCcc---h
Q 048358 393 VDLLGRAGRLDQALNIIEEM-P-----M---KPD-AKIWGSLLSSCRTYSNLEIAVIAMEHLLVL-----EPEDTG---N 454 (541)
Q Consensus 393 ~~~~~~~g~~~~A~~~~~~~-~-----~---~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~---~ 454 (541)
+..+.+.|++++|+.++++. . + .|+ ..+++.+..+|...|++++|+.+++++++. +|.+|. .
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 45566788999999888765 1 1 222 467888889999999999999999998863 455544 7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHh
Q 048358 455 YVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQD 526 (541)
Q Consensus 455 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 526 (541)
++.|+.+|..+|++++|+.++++..+--.. .-...||....++..|+.....++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 888999999999999999999998653110 011358888888888888877665
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=3.1e-05 Score=74.22 Aligned_cols=92 Identities=11% Similarity=0.004 Sum_probs=74.7
Q ss_pred hcCCHHHHHHHHHHHhc-----cCCCCcc---hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEE
Q 048358 430 TYSNLEIAVIAMEHLLV-----LEPEDTG---NYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEF 501 (541)
Q Consensus 430 ~~~~~~~a~~~~~~~~~-----~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ 501 (541)
..|++++|+.+++++++ ++|+++. +++.|+.+|...|+|++|+.++++..+--..
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~----------------- 372 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSK----------------- 372 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------------
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH-----------------
Confidence 46789999999998876 3466654 6788999999999999999999998653111
Q ss_pred EeCCCCCCChhHHHHHHHHHHHHHhcccCCcccccccC
Q 048358 502 VSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMYEDI 539 (541)
Q Consensus 502 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~i 539 (541)
.-...||+....+..||.+|..+|++++|...+++++
T Consensus 373 -~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 373 -HYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp -HSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 0113699999999999999999999999999888764
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00035 Score=66.95 Aligned_cols=84 Identities=11% Similarity=0.014 Sum_probs=66.2
Q ss_pred hcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhc-----cCCCCcc---hHHHHH
Q 048358 398 RAGRLDQALNIIEEM---------PMKPD-AKIWGSLLSSCRTYSNLEIAVIAMEHLLV-----LEPEDTG---NYVLLS 459 (541)
Q Consensus 398 ~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~---~~~~l~ 459 (541)
..|++++|+.++++. +..|+ ..+++.+..+|...|++++|+.+++++++ .+|++|. .++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 356778888777664 22343 36788899999999999999999999886 3455544 788899
Q ss_pred HHHHhcCCHHHHHHHHHHhhhC
Q 048358 460 NIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 460 ~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
.+|..+|++++|+.++++..+-
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHH
Confidence 9999999999999999988653
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00046 Score=51.00 Aligned_cols=64 Identities=16% Similarity=0.148 Sum_probs=35.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 048358 314 DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKR 378 (541)
Q Consensus 314 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 378 (541)
++..+..+...|...|++++|+..|++..+.. +.+...|..+..+|...|++++|++.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34455555555555666666666666555543 33444555555566666666666666655543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0034 Score=57.70 Aligned_cols=138 Identities=12% Similarity=-0.044 Sum_probs=67.4
Q ss_pred CChhHHHHHHHHHH--hcC---ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc---C-----cHHHHHHHHHHhhhh
Q 048358 313 RDVVSWSTVIGGLA--NHG---KAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHT---G-----FWNEGLMYFDSMKRD 379 (541)
Q Consensus 313 ~~~~~~~~l~~~~~--~~~---~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---g-----~~~~a~~~~~~~~~~ 379 (541)
.+...|...+.+.. ..+ ...+|..+|++.++.. |-....+..+..+|... + ........++.....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~ 270 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 270 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc
Confidence 35566666655432 222 3477888888888764 33344555444444310 0 001111111111110
Q ss_pred cCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC
Q 048358 380 HHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPED 451 (541)
Q Consensus 380 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (541)
...+.+..+|..+...+...|++++|...++++ ...|+...|..+...+.-.|++++|.+.++++..++|..
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 112344455555555555556666666666555 333555555555555556666666666666666665553
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=97.38 E-value=0.011 Score=44.63 Aligned_cols=140 Identities=9% Similarity=0.002 Sum_probs=92.5
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 048358 327 NHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQAL 406 (541)
Q Consensus 327 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 406 (541)
-.|..++..++..+.... .+..-|+.++--....-+-+-..++++.+-+-+.+ ..+|+.....
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKrVi 81 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSVV 81 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHHHH
Confidence 346666666666655542 24444555554444444445555555555442211 1244444444
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCcc
Q 048358 407 NIIEEMPMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKK 485 (541)
Q Consensus 407 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 485 (541)
.-+-.++ .+...+...+..+...|+-++-..++..++...+++++.+..++.+|.+.|+..+|.+++++.-++|++.
T Consensus 82 ~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~kE 158 (172)
T 1wy6_A 82 ECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEKE 158 (172)
T ss_dssp HHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhHH
Confidence 4444443 3445556677788899999999999999877888889999999999999999999999999999998743
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00011 Score=70.47 Aligned_cols=97 Identities=8% Similarity=-0.051 Sum_probs=78.6
Q ss_pred HHHHhhcCCHHHHHHHHHHHhcc-----CCCCc---chHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcC
Q 048358 425 LSSCRTYSNLEIAVIAMEHLLVL-----EPEDT---GNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNN 496 (541)
Q Consensus 425 ~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~ 496 (541)
+..+...|++++|+..++++++. +|.++ .+++.|+.+|...|+|++|+.+++++.+--...
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~----------- 362 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIF----------- 362 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHH-----------
Confidence 44567889999999999999864 35554 478889999999999999999999886531110
Q ss_pred EEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCcccccccC
Q 048358 497 EVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMYEDI 539 (541)
Q Consensus 497 ~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~i 539 (541)
....||+....+..|+.+|..+|++++|...+++++
T Consensus 363 -------lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 363 -------FPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp -------SCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -------cCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 113689999999999999999999999999888764
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00044 Score=50.85 Aligned_cols=79 Identities=15% Similarity=0.196 Sum_probs=57.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCH
Q 048358 392 LVDLLGRAGRLDQALNIIEEM-PMKP-DAK-IWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRW 468 (541)
Q Consensus 392 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 468 (541)
....+.+.|++++|++.|++. ...| +.. .+..+..++...|++++|+..|+++++.+|.++.++.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 456677788888888888876 4445 456 77778888888899999999999999988888776632 445
Q ss_pred HHHHHHHHHh
Q 048358 469 EDVSRMRKLI 478 (541)
Q Consensus 469 ~~A~~~~~~m 478 (541)
.++...+++.
T Consensus 78 ~~a~~~~~~~ 87 (99)
T 2kc7_A 78 MDILNFYNKD 87 (99)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHHH
Confidence 5555555544
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0017 Score=51.26 Aligned_cols=88 Identities=17% Similarity=0.045 Sum_probs=50.8
Q ss_pred CcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHhhcCCHHH
Q 048358 364 GFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAG---RLDQALNIIEEM-PMK-P--DAKIWGSLLSSCRTYSNLEI 436 (541)
Q Consensus 364 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~~~~~~ 436 (541)
+....+.+.|.+..... +++..+...+..++++.+ +.++++.+|++. ... | ....+..+.-++.+.|++++
T Consensus 12 ~~l~~~~~~y~~e~~~~--~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHccC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence 34455555665555422 355555666666666666 445666666665 222 4 23444555555666777777
Q ss_pred HHHHHHHHhccCCCCcc
Q 048358 437 AVIAMEHLLVLEPEDTG 453 (541)
Q Consensus 437 a~~~~~~~~~~~~~~~~ 453 (541)
|.+.++++++.+|++..
T Consensus 90 A~~y~~~lL~ieP~n~Q 106 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQ 106 (152)
T ss_dssp HHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHhcCCCCHH
Confidence 77777777776666543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.27 E-value=3.3e-06 Score=78.82 Aligned_cols=260 Identities=10% Similarity=0.022 Sum_probs=113.6
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHH
Q 048358 46 NFLVTKMIDVCNSGGDLAYASLLFKQVKEPNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIK 125 (541)
Q Consensus 46 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~ 125 (541)
+.+|+.|..+..+.+++.+|.+.|=+. .|+..|..++.+..+.|++++-+..+...++. ..++..=+.|+-
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-------~ke~~IDteLi~ 124 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK-------ARESYVETELIF 124 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-------CCSTTTTHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-------hcccccHHHHHH
Confidence 445555555555555555554443222 34444555555555555555555554444333 222333344555
Q ss_pred HHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 048358 126 SCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARML 205 (541)
Q Consensus 126 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 205 (541)
+|++.++..+..+.+ -.||..-...+.+-|...|.++.|.-+|..+.. |..|..++.+.|++..|.+.
T Consensus 125 ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-----~akLAstLV~L~~yq~AVda 192 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDG 192 (624)
T ss_dssp HHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-----CTTTSSSSSSCSGGGSSTTT
T ss_pred HHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-----HHHHHHHHHHHHHHHHHHHH
Confidence 555555544333222 123433334455555555555555555544432 11111111222222222111
Q ss_pred HhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHh
Q 048358 206 FDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTV 285 (541)
Q Consensus 206 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 285 (541)
-++ ..++.+|..+-.+|...+++.-|--.--.+.- .|| ....++..|-..|.+++...+++.-... -.....
T Consensus 193 ArK--Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmG 264 (624)
T 3lvg_A 193 ARK--ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMG 264 (624)
T ss_dssp TTT--CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHH
T ss_pred HHh--cCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHH
Confidence 111 12455666666666666665544332222221 111 1122344455555555555555544321 123445
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHccCC----C-------ChhHHHHHHHHHHhcCChHHHH
Q 048358 286 ICNALIEMYIKCGCINQASQLFDQMVE----R-------DVVSWSTVIGGLANHGKAHKAI 335 (541)
Q Consensus 286 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~-------~~~~~~~l~~~~~~~~~~~~a~ 335 (541)
+|+-|.-.|++- +.++..+.++.... | ....|.-++-.|..-.+++.|.
T Consensus 265 mFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 265 MFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 556555555543 33333333332211 1 3345666666666666665554
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.31 Score=48.74 Aligned_cols=113 Identities=10% Similarity=-0.024 Sum_probs=53.6
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHH----HHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHH
Q 048358 330 KAHKAIHLFHEMQRLKVPPNDITF----IGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQA 405 (541)
Q Consensus 330 ~~~~a~~~~~~m~~~~~~p~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 405 (541)
+.+.|...|....... ..+.... ..+.......+...++...+...... .++.....-.+....+.|+++.|
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHH
Confidence 5667777776665432 2222221 12222333334233444444443332 12222233333444456777777
Q ss_pred HHHHHhCCCCC-C-HHHHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 048358 406 LNIIEEMPMKP-D-AKIWGSLLSSCRTYSNLEIAVIAMEHLLV 446 (541)
Q Consensus 406 ~~~~~~~~~~p-~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 446 (541)
...|+.|+..+ + .....=+..++...|+.++|..+|+++.+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 77777774332 1 21111233345566777777777777654
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0079 Score=44.55 Aligned_cols=73 Identities=16% Similarity=0.091 Sum_probs=44.9
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHH
Q 048358 386 IEHYGCLVDLLGRAGRLDQALNIIEEM-----P----MKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYV 456 (541)
Q Consensus 386 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 456 (541)
......+...+.+.|++..|..+|+.. + -.+....+..+..++.+.|+++.|+..++++++..|.++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 334456666677777777777766654 0 0123455666666667777777777777777777776655544
Q ss_pred HH
Q 048358 457 LL 458 (541)
Q Consensus 457 ~l 458 (541)
.+
T Consensus 85 n~ 86 (104)
T 2v5f_A 85 NL 86 (104)
T ss_dssp HH
T ss_pred hH
Confidence 43
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0034 Score=55.20 Aligned_cols=87 Identities=14% Similarity=0.181 Sum_probs=70.8
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHhh-----cCCHHHHHHHHHHHhccCCCC-cchHHHHHHHHHhc-CCHHH
Q 048358 402 LDQALNIIEEM-PMKPD---AKIWGSLLSSCRT-----YSNLEIAVIAMEHLLVLEPED-TGNYVLLSNIYAKH-GRWED 470 (541)
Q Consensus 402 ~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~-g~~~~ 470 (541)
...|...+++. .+.|+ ...|..+...|.+ .|+.++|.+.|+++++++|+. ..++..+++.+++. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 45666666665 56676 5677777777877 599999999999999999974 99999999999985 99999
Q ss_pred HHHHHHHhhhCCCccCCc
Q 048358 471 VSRMRKLIRSKSMKKTPG 488 (541)
Q Consensus 471 A~~~~~~m~~~~~~~~~~ 488 (541)
|.+.+++....+....|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999999887664333
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0082 Score=44.46 Aligned_cols=71 Identities=14% Similarity=0.183 Sum_probs=52.1
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhc-----CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH
Q 048358 348 PNDITFIGLLSACAHTGFWNEGLMYFDSMKRDH-----HIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPDA 418 (541)
Q Consensus 348 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 418 (541)
.+...+..+...+...|++..|...|+...+.. .-.+....+..+..+|.+.|++++|...+++. .+.|+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~ 79 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH 79 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 345566677888888888888888888877642 11245667788888888888888888888877 456654
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0044 Score=48.85 Aligned_cols=85 Identities=11% Similarity=0.055 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC---cHHHHHHHHHHhhhhcCCCC--cHhHHHHHHHHHHhcCCHHHH
Q 048358 331 AHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTG---FWNEGLMYFDSMKRDHHIEH--KIEHYGCLVDLLGRAGRLDQA 405 (541)
Q Consensus 331 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A 405 (541)
...+.+-|.+....| +++..+...+..++.+++ ++++++.+|+.+.+.. .| +...+-.+.-+|.+.|++++|
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~--~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CccchHHHHHHHHHHHHHccCHHHH
Confidence 445556666666655 466677677777777766 5667777777777642 23 345556666777777777777
Q ss_pred HHHHHhC-CCCCCH
Q 048358 406 LNIIEEM-PMKPDA 418 (541)
Q Consensus 406 ~~~~~~~-~~~p~~ 418 (541)
.+.++.+ .++|+.
T Consensus 91 ~~y~~~lL~ieP~n 104 (152)
T 1pc2_A 91 LKYVRGLLQTEPQN 104 (152)
T ss_dssp HHHHHHHHHHCTTC
T ss_pred HHHHHHHHhcCCCC
Confidence 7777776 555643
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.82 E-value=0.014 Score=53.73 Aligned_cols=133 Identities=14% Similarity=0.056 Sum_probs=92.5
Q ss_pred CCCHHHHHHHHHHHh--c---cCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHh---cC-C-------HHHHHHHHH
Q 048358 347 PPNDITFIGLLSACA--H---TGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGR---AG-R-------LDQALNIIE 410 (541)
Q Consensus 347 ~p~~~~~~~l~~~~~--~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g-~-------~~~A~~~~~ 410 (541)
+.+...|...+++.. . ..+..+|+.+|++..+.. |.....|..+..+|.. .+ . ...+.+...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD--P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS--PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 667778887776643 2 234678999999999752 3334445544444421 11 1 112222222
Q ss_pred hCC-CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 048358 411 EMP-MKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKS 482 (541)
Q Consensus 411 ~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 482 (541)
.+. ...+..++..+...+...|++++|+..+++++.++| +...|..++.++.-.|++++|.+.+++....+
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 332 234778888887777778999999999999999996 46778899999999999999999999887654
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0083 Score=43.27 Aligned_cols=69 Identities=10% Similarity=0.058 Sum_probs=51.5
Q ss_pred CCcHhHHHHHHHHHHhcCC---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC
Q 048358 383 EHKIEHYGCLVDLLGRAGR---LDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPED 451 (541)
Q Consensus 383 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (541)
+++...+..+..++...++ .++|..++++. ...| +......+...+...|++++|+..|+++++.+|++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 4566677777777765444 68888888877 5556 45666667777888889999999999888888873
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.097 Score=55.06 Aligned_cols=45 Identities=18% Similarity=0.254 Sum_probs=23.0
Q ss_pred HhcCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 048358 295 IKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEM 341 (541)
Q Consensus 295 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 341 (541)
...|+++.|.++.+.+ .+...|..+...+.+.++++.|.+.|.++
T Consensus 663 l~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3445555555554443 23345555555555555555555555544
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.34 E-value=0.033 Score=42.13 Aligned_cols=90 Identities=18% Similarity=0.031 Sum_probs=45.5
Q ss_pred cCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHhhcCCHH
Q 048358 363 TGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQ---ALNIIEEM-PMK-P--DAKIWGSLLSSCRTYSNLE 435 (541)
Q Consensus 363 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~~~~~ 435 (541)
...+..+.+-|....... .++..+-..+..++++.....+ ++.++++. ... | .......+.-++.+.|+++
T Consensus 14 ~~~l~~~~~~y~~e~~~~--~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHH
Confidence 344444555555444422 2445555555566666555444 55555555 222 3 1223333444456666666
Q ss_pred HHHHHHHHHhccCCCCcch
Q 048358 436 IAVIAMEHLLVLEPEDTGN 454 (541)
Q Consensus 436 ~a~~~~~~~~~~~~~~~~~ 454 (541)
+|.+.++.+++.+|.|..+
T Consensus 92 ~A~~~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 92 KALKYVRGLLQTEPQNNQA 110 (126)
T ss_dssp HHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHhCCCCHHH
Confidence 6666666666666665443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.42 Score=38.64 Aligned_cols=102 Identities=16% Similarity=0.164 Sum_probs=46.5
Q ss_pred HHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 048358 294 YIKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYF 373 (541)
Q Consensus 294 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 373 (541)
....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... |..+.-.|...|+.+.-..+-
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 34445555555554443 3344555555555555555555555554322 222333333344444433333
Q ss_pred HHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 048358 374 DSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMP 413 (541)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 413 (541)
+....++ -++.....+.-.|+++++.++|.+.+
T Consensus 84 ~iA~~~g-------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 84 NIAQTRE-------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHTT-------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHCc-------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 3222210 02333344445566666666665554
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.35 Score=39.08 Aligned_cols=101 Identities=13% Similarity=0.058 Sum_probs=46.4
Q ss_pred HHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 048358 259 CAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLF 338 (541)
Q Consensus 259 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 338 (541)
....|+++.|.++.+.+ .+...|..|.+.....|+++-|.++|....+ +..+.-.|...|+.++...+-
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHHHH
Confidence 34455555555554433 1344555555555555555555555554433 223333344445544444444
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 048358 339 HEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSM 376 (541)
Q Consensus 339 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 376 (541)
+.....| -++....++...|+++++.++|.+.
T Consensus 84 ~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 84 NIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 4333333 1222333334445555555555443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.97 E-value=0.07 Score=40.38 Aligned_cols=89 Identities=11% Similarity=0.095 Sum_probs=57.5
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHH---HHHHHHHhhhhcCCCC--cHhHHHHHHHHHHhcC
Q 048358 326 ANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNE---GLMYFDSMKRDHHIEH--KIEHYGCLVDLLGRAG 400 (541)
Q Consensus 326 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g 400 (541)
........+.+-|.+....| .|+..+-..+..++.++.+... ++.+++.+.+. + .| .....-.|.-++.+.|
T Consensus 12 ~~~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-~-~p~~~Rd~lY~LAvg~yklg 88 (126)
T 1nzn_A 12 VSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLK 88 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-S-CHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CcchHHHHHHHHHHHHHHhh
Confidence 33344555566666655555 4677777777777777766555 77778777764 1 23 3444556667778888
Q ss_pred CHHHHHHHHHhC-CCCCC
Q 048358 401 RLDQALNIIEEM-PMKPD 417 (541)
Q Consensus 401 ~~~~A~~~~~~~-~~~p~ 417 (541)
++++|.+.++.+ .++|+
T Consensus 89 ~Y~~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 89 EYEKALKYVRGLLQTEPQ 106 (126)
T ss_dssp CHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHHhCCC
Confidence 888888888777 55563
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.93 E-value=0.085 Score=55.48 Aligned_cols=100 Identities=14% Similarity=0.071 Sum_probs=60.9
Q ss_pred HHHcCCChHHHHH-HHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCc
Q 048358 55 VCNSGGDLAYASL-LFKQVKEPNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCP 133 (541)
Q Consensus 55 ~~~~~~~~~~A~~-~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 133 (541)
.....+++++|.+ ++..++. ......+++.+.+.|.++.|+++.++- ..-.......|++
T Consensus 608 ~~~~~~~~~~a~~~~l~~i~~--~~~~~~~~~~l~~~~~~~~a~~~~~~~-----------------~~~f~~~l~~~~~ 668 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNVEG--KDSLTKIARFLEGQEYYEEALNISPDQ-----------------DQKFELALKVGQL 668 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGCCC--HHHHHHHHHHHHHTTCHHHHHHHCCCH-----------------HHHHHHHHHHTCH
T ss_pred HHHHhCCHHHHHHHHHhcCCc--hHHHHHHHHHHHhCCChHHheecCCCc-----------------chheehhhhcCCH
Confidence 3345677888777 6644431 122266667777777777777654211 1112334556777
Q ss_pred hHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcC
Q 048358 134 SLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMT 179 (541)
Q Consensus 134 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 179 (541)
+.|.++.+. -.+...|..+...+.+.|+++.|.+.|.++.
T Consensus 669 ~~A~~~~~~------~~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 669 TLARDLLTD------ESAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHHHHTT------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHh------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 777766432 2356677778888888888888877777654
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.82 E-value=3.8e-05 Score=71.82 Aligned_cols=275 Identities=15% Similarity=0.150 Sum_probs=191.0
Q ss_pred ChHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHH
Q 048358 61 DLAYASLLFKQVKEPNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIH 140 (541)
Q Consensus 61 ~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 140 (541)
+++.|.+.-++.. .+..|..|..+....+...+|++.|-+ ..|+..|..++.++.+.|.++.-...+
T Consensus 40 ~ldRa~eyA~~~n--~p~VWs~LgkAqL~~~~v~eAIdsyIk-----------A~Dps~y~eVi~~A~~~~~~edLv~yL 106 (624)
T 3lvg_A 40 NLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIK-----------ADDPSSYMEVVQAANTSGNWEELVKYL 106 (624)
T ss_dssp CSTTTTTSSSSCC--CCCCSSSHHHHTTTSSSCTTTTTSSCC-----------CSCCCSSSHHHHHTTTSSCCTTHHHHH
T ss_pred ccHHHHHHHHHhC--CccHHHHHHHHHHccCchHHHHHHHHh-----------CCChHHHHHHHHHHHhCCCHHHHHHHH
Confidence 3444444444333 456788899999999998888776532 567788999999999999999999988
Q ss_pred HHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHH
Q 048358 141 AHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAM 220 (541)
Q Consensus 141 ~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l 220 (541)
....+..- ++.+=+.|+-+|++.+++.+-.+++. .||..-...+.+-|...|.++.|.-+|..+. -|..|
T Consensus 107 ~MaRk~~k--e~~IDteLi~ayAk~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~is-----N~akL 176 (624)
T 3lvg_A 107 QMARKKAR--ESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----NFGRL 176 (624)
T ss_dssp HTTSTTCC--STTTTHHHHHHHHTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC-----CCTTT
T ss_pred HHHHHHhc--ccccHHHHHHHHHhhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCc-----cHHHH
Confidence 87766533 34444679999999999766543322 3777777888888889999998888877765 34456
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCH
Q 048358 221 ISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCI 300 (541)
Q Consensus 221 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 300 (541)
..++.+.|++..|.+.-++ .-+..||..+-.+|...+.+..|...--.++-. +.-...++..|...|-+
T Consensus 177 AstLV~L~~yq~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f 245 (624)
T 3lvg_A 177 ASTLVHLGEYQAAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYF 245 (624)
T ss_dssp SSSSSSCSGGGSSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCH
Confidence 6677888998888765444 346678888999999999888776553333321 22233466678888888
Q ss_pred HHHHHHHHccC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 048358 301 NQASQLFDQMV---ERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSM 376 (541)
Q Consensus 301 ~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 376 (541)
++-+.+++.-. +.....|+-|.-.|++- ++++..+.++..-. +.|. -.++++|....-|.++.-+|..-
T Consensus 246 ~ELIsLlEaglglErAHmGmFTELaILYsKY-~PeKlmEHlklf~s---riNi---pKviracE~ahLW~ElvfLY~~y 317 (624)
T 3lvg_A 246 EELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWS---RVNI---PKVLRAAEQAHLWAELVFLYDKY 317 (624)
T ss_dssp TTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSS---SSCC---TTTHHHHTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHH---hccH---HHHHHHHHHHhhHHHHHHHHhcc
Confidence 88888877653 35677788888777775 45666655554322 2222 13677788777777777666543
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.48 E-value=0.43 Score=36.79 Aligned_cols=28 Identities=18% Similarity=0.278 Sum_probs=14.4
Q ss_pred HHHHHhhcCCHHHHHHHHHHHhccCCCC
Q 048358 424 LLSSCRTYSNLEIAVIAMEHLLVLEPED 451 (541)
Q Consensus 424 l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (541)
+.-++.+.|++++|.+..+.+++.+|.|
T Consensus 83 LAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 83 LTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 3334555555555555555555555554
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.12 Score=40.95 Aligned_cols=117 Identities=12% Similarity=0.028 Sum_probs=63.0
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcH-------hHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCH-HH
Q 048358 353 FIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKI-------EHYGCLVDLLGRAGRLDQALNIIEEM----PMKPDA-KI 420 (541)
Q Consensus 353 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~-~~ 420 (541)
+..-+..+...|.++.|+-+.+.+....+..|+. .++..+.+++...|++.+|...|++. ..-+.. .+
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3444556666777777777766654432222331 24455667777777777777777664 110111 00
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 421 WGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 421 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
...+ .. ...... -.. .+.+.+.-..++.+|.+.|++++|+.+++.++.+
T Consensus 103 ~~~~-~~---~ss~p~-------s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 103 RPST-GN---SASTPQ-------SQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp -------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred cccc-cc---cCCCcc-------ccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 0000 00 000000 000 1233467788999999999999999999887543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.05 E-value=0.13 Score=52.49 Aligned_cols=55 Identities=11% Similarity=0.022 Sum_probs=51.3
Q ss_pred HHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048358 426 SSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 426 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 480 (541)
.-|...|+++.|+.+.+++....|.+..+|..|+.+|...|+|+.|+-.++-++.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScPm 399 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMPR 399 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCCC
Confidence 3367899999999999999999999999999999999999999999999999973
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=95.00 E-value=0.24 Score=37.58 Aligned_cols=65 Identities=8% Similarity=-0.037 Sum_probs=37.1
Q ss_pred CCHHHHHHHHHHHhhcCC---HHHHHHHHHHHhccCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048358 416 PDAKIWGSLLSSCRTYSN---LEIAVIAMEHLLVLEPE-DTGNYVLLSNIYAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 416 p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 480 (541)
|+..+--.+..++.++.+ ..+++.+++.+.+.+|. ..+.+..|+.++.+.|++++|.+..+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 444444444444444443 33566666666665553 345566666666666666666666666654
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.86 E-value=0.16 Score=39.43 Aligned_cols=106 Identities=10% Similarity=-0.003 Sum_probs=53.5
Q ss_pred CCCHHHHHHHHHHHhccCcH------HHHHHHHHHhhhhcCCCCcHh-HHHHHHHH------HHhcCCHHHHHHHHHhC-
Q 048358 347 PPNDITFIGLLSACAHTGFW------NEGLMYFDSMKRDHHIEHKIE-HYGCLVDL------LGRAGRLDQALNIIEEM- 412 (541)
Q Consensus 347 ~p~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~------~~~~g~~~~A~~~~~~~- 412 (541)
+-|..+|-..+....+.|++ +..+++|++... .+||+.. .|...+.. +...++.++|.++|+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34556666666666666777 777777777766 3455421 12222211 12235555555555554
Q ss_pred CC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcch
Q 048358 413 PM-KPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGN 454 (541)
Q Consensus 413 ~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 454 (541)
.. +--...|.....--.++|+++.|..++.+++.+.|.+...
T Consensus 88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 10 0014444444444455555555555555555555554333
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.75 E-value=0.047 Score=48.09 Aligned_cols=82 Identities=12% Similarity=0.113 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhhhhcCCCCc---HhHHHHHHHHHHh-----cCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHhh-cCC
Q 048358 366 WNEGLMYFDSMKRDHHIEHK---IEHYGCLVDLLGR-----AGRLDQALNIIEEM-PMKPD--AKIWGSLLSSCRT-YSN 433 (541)
Q Consensus 366 ~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~-~~~ 433 (541)
...|...+++..+- .|+ ...|..+...|.+ -|+.++|.+.|++. .+.|+ ..++......++. .|+
T Consensus 179 l~~A~a~lerAleL---DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACDL---WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHH---CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHHh---CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 45566666666653 344 4567777777777 38888888888877 55563 5666666666666 488
Q ss_pred HHHHHHHHHHHhccCCC
Q 048358 434 LEIAVIAMEHLLVLEPE 450 (541)
Q Consensus 434 ~~~a~~~~~~~~~~~~~ 450 (541)
.+++.+.+++++...|.
T Consensus 256 ~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 256 RAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 88888888888877655
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=94.42 E-value=5.7 Score=41.53 Aligned_cols=27 Identities=15% Similarity=0.050 Sum_probs=21.3
Q ss_pred cHHHHHHHHhccCCchHHHHHHHHHHH
Q 048358 119 TLPFVIKSCAGLLCPSLGKQIHAHVCK 145 (541)
Q Consensus 119 ~~~~ll~~~~~~~~~~~a~~~~~~~~~ 145 (541)
-|..++++..+.++.+.+.++|..+.+
T Consensus 232 dy~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 232 DYLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 466777777888888888888888764
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.27 E-value=0.36 Score=37.55 Aligned_cols=97 Identities=10% Similarity=0.190 Sum_probs=56.5
Q ss_pred CChhHHHHHHHHHHhcCCh------HHHHHHHHHHHhCCCCCCHH----HHHHHHHHH---hccCcHHHHHHHHHHhhhh
Q 048358 313 RDVVSWSTVIGGLANHGKA------HKAIHLFHEMQRLKVPPNDI----TFIGLLSAC---AHTGFWNEGLMYFDSMKRD 379 (541)
Q Consensus 313 ~~~~~~~~l~~~~~~~~~~------~~a~~~~~~m~~~~~~p~~~----~~~~l~~~~---~~~g~~~~a~~~~~~~~~~ 379 (541)
.|..+|-..+...-+.|+. ++..++|++.... +||+.. .|..+---| ...+++++|.++|+.+.+.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3566676666666666776 6666777766664 455432 122222212 1235666777777777553
Q ss_pred cCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 048358 380 HHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM 412 (541)
Q Consensus 380 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 412 (541)
+-.- ...|......-.++|+...|.+++.+.
T Consensus 90 -hKkF-AKiwi~~AqFEiRqgnl~kARkILg~A 120 (161)
T 4h7y_A 90 -CKKF-AFVHISFAQFELSQGNVKKSKQLLQKA 120 (161)
T ss_dssp -CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 2222 555666666666777777777777665
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.13 E-value=1.4 Score=33.48 Aligned_cols=81 Identities=10% Similarity=0.016 Sum_probs=51.5
Q ss_pred cCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 048358 297 CGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSM 376 (541)
Q Consensus 297 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 376 (541)
+|++......+-.+-. +.......+..+..+|+-++-.+++..+.... +|++.....+..+|.+.|+..++.+++.+.
T Consensus 74 C~NlKrVi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~-~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A 151 (172)
T 1wy6_A 74 CQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEA 151 (172)
T ss_dssp CSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhccC-CCChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 3444444444443322 22334555667777788777777777754433 677777777888888888888888887777
Q ss_pred hhh
Q 048358 377 KRD 379 (541)
Q Consensus 377 ~~~ 379 (541)
-++
T Consensus 152 C~k 154 (172)
T 1wy6_A 152 CKK 154 (172)
T ss_dssp HHT
T ss_pred HHh
Confidence 664
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=90.75 E-value=3.7 Score=31.63 Aligned_cols=68 Identities=7% Similarity=-0.030 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHhccCc---HHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC
Q 048358 348 PNDITFIGLLSACAHTGF---WNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP 416 (541)
Q Consensus 348 p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 416 (541)
|+..+-..+..++.++.+ ..+++.+++.+.+.. ........-.|.-++.+.|++++|.++.+.+ ...|
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~-~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC-CSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-ccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 444444444444444332 234445555544421 1112233333444555555555555555544 3344
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=90.70 E-value=0.75 Score=43.25 Aligned_cols=67 Identities=12% Similarity=0.117 Sum_probs=49.7
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhh-----CCCccCCc
Q 048358 422 GSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRS-----KSMKKTPG 488 (541)
Q Consensus 422 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~ 488 (541)
..++.++...|+.++++..+..+...+|-+...|..++.+|.+.|+..+|++.|+.+.. .|+.|.+.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 44556667778888888888888888888777888888888888888888888777654 26666543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=90.39 E-value=1.6 Score=33.14 Aligned_cols=71 Identities=11% Similarity=0.061 Sum_probs=41.0
Q ss_pred CcHhHHHHHHHHHHhcCCH---HHHHHHHHhC-CCCC--CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcch
Q 048358 384 HKIEHYGCLVDLLGRAGRL---DQALNIIEEM-PMKP--DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGN 454 (541)
Q Consensus 384 ~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 454 (541)
|+..+--.+..++++..+. .+++.+++++ ...| ....+..+.-++.+.|++++|.+..+.+++.+|.|..+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 4444444555555555443 3455555554 2223 23444455556777777777777777777777777543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.28 E-value=13 Score=35.50 Aligned_cols=48 Identities=4% Similarity=0.045 Sum_probs=26.5
Q ss_pred CChHHHHHHHHHHHHh-----CCCccHhHHHHHHHHHHhcCCHHHHHHHHHcc
Q 048358 263 GSLELGEWIHMYCDKN-----HLLRRTVICNALIEMYIKCGCINQASQLFDQM 310 (541)
Q Consensus 263 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 310 (541)
|+++.|.+.+..+.+. +...+......++..|...|+++...+.+.-+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~L 82 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLL 82 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 5566666655554432 22334445566666666677766665554433
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.01 E-value=1.8 Score=34.34 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=14.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCC
Q 048358 390 GCLVDLLGRAGRLDQALNIIEEMP 413 (541)
Q Consensus 390 ~~l~~~~~~~g~~~~A~~~~~~~~ 413 (541)
-.+..+|.+.|++++|+.+++.++
T Consensus 126 ykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 126 YKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHCCHHHHHHHHhcCC
Confidence 345556666666666666666663
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.41 E-value=14 Score=35.29 Aligned_cols=186 Identities=10% Similarity=0.091 Sum_probs=118.3
Q ss_pred cCChHHHHHHHHHHHHC-----CCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC-ccHh--HHHHHHHHHHhcC
Q 048358 227 IGSYAEALDVFRQMQMV-----GIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLL-RRTV--ICNALIEMYIKCG 298 (541)
Q Consensus 227 ~g~~~~A~~~~~~m~~~-----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~--~~~~l~~~~~~~g 298 (541)
.|++++|++.+..+.+. ...........++..|...++++.....+..+.+..-. +... ..+.++.......
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 47889999888776542 33456677888999999999999998887766554322 2221 1222233333333
Q ss_pred CH--HHHHHHHHccCC---CC-------hhHHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHh
Q 048358 299 CI--NQASQLFDQMVE---RD-------VVSWSTVIGGLANHGKAHKAIHLFHEMQRL--KVPPN---DITFIGLLSACA 361 (541)
Q Consensus 299 ~~--~~A~~~~~~~~~---~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~p~---~~~~~~l~~~~~ 361 (541)
.. +.-..+...+.. .- ......|...|...|++.+|.+++..+... |..+. ...+...++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 32 223334443322 11 113356788889999999999999998643 32111 134566678889
Q ss_pred ccCcHHHHHHHHHHhhhh-cCC--CCc--HhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 048358 362 HTGFWNEGLMYFDSMKRD-HHI--EHK--IEHYGCLVDLLGRAGRLDQALNIIEEM 412 (541)
Q Consensus 362 ~~g~~~~a~~~~~~~~~~-~~~--~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 412 (541)
..+++..|..++.++... ... +|+ ...+...+..+...+++.+|.+.|.+.
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999999999987531 111 222 234667777888889999988877665
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=89.30 E-value=12 Score=33.77 Aligned_cols=168 Identities=12% Similarity=0.050 Sum_probs=102.3
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHH----HHhhhCCCCCCCCCCCcccHHH
Q 048358 47 FLVTKMIDVCNSGGDLAYASLLFKQVKEPNVFLYNAMIRAYTNNHLYGLAINLY----KQMLRDPRTGSLILPDKFTLPF 122 (541)
Q Consensus 47 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~----~~m~~~~~~~~~~~p~~~~~~~ 122 (541)
..|.++..-|.+.+++++|.+++-. -...+.+.|+...|.++- +-+.+.++ ++|..+...
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~-----~~~~~~~~r 99 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQ-----RVDGASRGK 99 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-----CCCHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCC-----CCCHHHHHH
Confidence 4677777888999999999988764 234566777776665554 45555666 788888888
Q ss_pred HHHHHhccCCch-HHHHHHHHHH----HhC--CCCchhhHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHh
Q 048358 123 VIKSCAGLLCPS-LGKQIHAHVC----KFG--LKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYAR 195 (541)
Q Consensus 123 ll~~~~~~~~~~-~a~~~~~~~~----~~g--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 195 (541)
++..+.....-+ .-..+.+.++ +.| ..-++.....+...|.+.+++.+|..-|-.-.+++...+..++.-+.+
T Consensus 100 L~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~ 179 (336)
T 3lpz_A 100 LLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYK 179 (336)
T ss_dssp HHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 888777665322 2223333333 334 234566777788888888999888887743222333566555555544
Q ss_pred cCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 048358 196 LGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQ 241 (541)
Q Consensus 196 ~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 241 (541)
.+...++ +...- ..+-.|...++...|..+++...
T Consensus 180 ~~~~~e~----------dlfia-RaVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 180 QDESHTA----------PLYCA-RAVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp TSCGGGH----------HHHHH-HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hcCCccH----------HHHHH-HHHHHHHHhCCHHHHHHHHHHHH
Confidence 4432221 11111 12234556677777777665554
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=89.20 E-value=4.3 Score=28.81 Aligned_cols=49 Identities=14% Similarity=0.220 Sum_probs=22.8
Q ss_pred HhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048358 194 ARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVG 244 (541)
Q Consensus 194 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 244 (541)
...|++++|..+.+.+..||...|-+|.. .+.|-.+++...+.++...|
T Consensus 51 mNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 51 MNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 33444444444444444444444443332 34455555555555554444
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=89.14 E-value=12 Score=33.51 Aligned_cols=169 Identities=12% Similarity=0.049 Sum_probs=103.1
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHH----HHHhhhCCCCCCCCCCCcccHH
Q 048358 46 NFLVTKMIDVCNSGGDLAYASLLFKQVKEPNVFLYNAMIRAYTNNHLYGLAINL----YKQMLRDPRTGSLILPDKFTLP 121 (541)
Q Consensus 46 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~----~~~m~~~~~~~~~~~p~~~~~~ 121 (541)
...|.++..-|.+.+++++|.+++... ...+.+.|+...|.++ ++-..+.++ +++.....
T Consensus 33 hQ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~-----~~~~~~~~ 96 (312)
T 2wpv_A 33 HQTLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEV-----KVDDISVA 96 (312)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----CCSHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCC-----CCCHHHHH
Confidence 447777888888889999999887652 3456677887666554 455555676 78888888
Q ss_pred HHHHHHhccCCch-HHHHHHHHHH----HhCC--CCchhhHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHH
Q 048358 122 FVIKSCAGLLCPS-LGKQIHAHVC----KFGL--KSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYA 194 (541)
Q Consensus 122 ~ll~~~~~~~~~~-~a~~~~~~~~----~~g~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 194 (541)
.++..+......+ .-.++.+.++ +.|- .-++.....+...|.+.|++.+|..-|-.-...+...+..++.-+.
T Consensus 97 rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~ 176 (312)
T 2wpv_A 97 RLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWL 176 (312)
T ss_dssp HHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 8887776543211 2233444444 3332 2356777888888888899888888776332224555655555554
Q ss_pred hc---CCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 048358 195 RL---GQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQ 241 (541)
Q Consensus 195 ~~---~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 241 (541)
+. |...++--+ . ...+-.|...|+...|..+|+...
T Consensus 177 ~~~~~~~~~e~dlf----------~-~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 177 CQVDDIEDSTVAEF----------F-SRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHTTCCCHHHHHHH----------H-HHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred HhcCCCCcchHHHH----------H-HHHHHHHHHhcCHHHHHHHHHHHH
Confidence 44 444332111 1 112223456677777777776654
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=89.02 E-value=20 Score=35.85 Aligned_cols=394 Identities=9% Similarity=-0.083 Sum_probs=206.2
Q ss_pred HHHHHHHHhccCC-chhHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCC
Q 048358 32 KIHTQILKYLLSQ-SNFLVTKMIDVCNSGGDLAYASLLFKQVKEPNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTG 110 (541)
Q Consensus 32 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~ 110 (541)
+|..-+.++.-.| ....-+..+..+.+.+++...+..+.. ...+...-.....+....|+..+|......+-..|
T Consensus 57 ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~--- 132 (618)
T 1qsa_A 57 TVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG--- 132 (618)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS---
T ss_pred HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC---
Confidence 4445454543222 233445556777788888888887776 33344444556677778888888888777776665
Q ss_pred CCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHH
Q 048358 111 SLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLI 190 (541)
Q Consensus 111 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~ 190 (541)
...+..+..++..+...|.. .....+. -+......|+...|..+...+..........++
T Consensus 133 ---~~~p~~c~~l~~~~~~~g~l----------------t~~~~~~-R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~ 192 (618)
T 1qsa_A 133 ---KSQPNACDKLFSVWRASGKQ----------------DPLAYLE-RIRLAMKAGNTGLVTVLAGQMPADYQTIASAII 192 (618)
T ss_dssp ---SCCCTHHHHHHHHHHHTTCS----------------CHHHHHH-HHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHH
T ss_pred ---CCCcHHHHHHHHHHHHCCCC----------------CHHHHHH-HHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHH
Confidence 33444444454444433332 2222222 334556667777777776666322222223333
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCCcc---hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHH----HHHHHHccC
Q 048358 191 SGYARLGQMKKARMLFDKMPYTTIV---SWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVS----VLPACAQLG 263 (541)
Q Consensus 191 ~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~----ll~~~~~~~ 263 (541)
..+..- ..+....... .++.. .+..-+.-+.+ .+.+.|...+....... ..+...... +.......+
T Consensus 193 al~~~p---~~~~~~~~~~-~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~ 266 (618)
T 1qsa_A 193 SLANNP---NTVLTFARTT-GATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGND 266 (618)
T ss_dssp HHHHCG---GGHHHHHHHS-CCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTT
T ss_pred HHHhCh---HhHHHHHhcc-CCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcC
Confidence 333222 2223333322 22221 11112222333 37889999998886543 223332222 222333444
Q ss_pred ChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCCC---hhHHHHHHHHHHhcCChHHHHHHHHH
Q 048358 264 SLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERD---VVSWSTVIGGLANHGKAHKAIHLFHE 340 (541)
Q Consensus 264 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~ 340 (541)
....+...+....... .+.....-.+....+.|+++.|...|..|.... ....-=+..++...|+.++|..+|..
T Consensus 267 ~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~ 344 (618)
T 1qsa_A 267 VTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQ 344 (618)
T ss_dssp CCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2445555555544332 233334444555667899999999999996642 22233345677788999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCc------HhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 048358 341 MQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHK------IEHYGCLVDLLGRAGRLDQALNIIEEMPM 414 (541)
Q Consensus 341 m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 414 (541)
+... . +|..++.+ .+.|..-. . .....++. ...-..-+..+...|....|...+..+.-
T Consensus 345 ~a~~---~---~fYg~lAa-~~Lg~~~~-------~-~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~ 409 (618)
T 1qsa_A 345 LMQQ---R---GFYPMVAA-QRIGEEYE-------L-KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVK 409 (618)
T ss_dssp HHTS---C---SHHHHHHH-HHTTCCCC-------C-CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HhcC---C---ChHHHHHH-HHcCCCCC-------C-CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHh
Confidence 8752 2 33333322 12221000 0 00000010 00112234567788999999887777622
Q ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCC---CCcchHHHHHHHHHhcCCHHHHH
Q 048358 415 KPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEP---EDTGNYVLLSNIYAKHGRWEDVS 472 (541)
Q Consensus 415 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~ 472 (541)
..+......+.......|..+.++....+....+. .-|..|..++.-+.+.-.++.++
T Consensus 410 ~~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~P~~y~~~i~~~a~~~gv~~~l 470 (618)
T 1qsa_A 410 SKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFPLAYNDLFKRYTSGKEIPQSY 470 (618)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHSCCTTHHHHHHHHTTSSSCHHH
T ss_pred cCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhCCcchHHHHHHHHHHcCCCHHH
Confidence 23444444455556678888888776655443220 11234555565666555555443
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=88.96 E-value=2 Score=30.68 Aligned_cols=64 Identities=13% Similarity=0.162 Sum_probs=50.6
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHH
Q 048358 330 KAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDL 395 (541)
Q Consensus 330 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 395 (541)
+.-+..+-++.+....+.|++......+++|.+.+++..|.++|+.++.+.+ +...+|..++.-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHHH
Confidence 4556677778888888899999999999999999999999999999987643 334557666643
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=88.89 E-value=15 Score=34.25 Aligned_cols=57 Identities=11% Similarity=-0.056 Sum_probs=25.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHhccCcHHHHHHHHHHhh
Q 048358 321 VIGGLANHGKAHKAIHLFHEMQRLKVPPND-----ITFIGLLSACAHTGFWNEGLMYFDSMK 377 (541)
Q Consensus 321 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~ 377 (541)
++..|...|++.+|.+++.++.+.=-+.|. ..+..-+..|...+++.++...+....
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 445555555555555555554432111111 122233344445555555555555443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=88.19 E-value=3 Score=39.10 Aligned_cols=67 Identities=15% Similarity=0.132 Sum_probs=45.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhh----hcCCCCcHh
Q 048358 320 TVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKR----DHHIEHKIE 387 (541)
Q Consensus 320 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~ 387 (541)
.++..+...|+++++...+..+.... +-+...+..++.++...|+..+|++.|+.+.+ ..|+.|+..
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 34556666777777777777766654 55666777777777777777777777776544 346666665
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=88.00 E-value=10 Score=31.25 Aligned_cols=50 Identities=16% Similarity=0.111 Sum_probs=22.6
Q ss_pred CCchhHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHcCCC
Q 048358 43 SQSNFLVTKMIDVCNSGGDLAYASLLFKQVKEPNVFLYNAMIRAYTNNHL 92 (541)
Q Consensus 43 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~ 92 (541)
.++..+-...+..+.+.+..+....+.+.+..++...-...+.++...|.
T Consensus 25 ~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~ 74 (201)
T 3ltj_A 25 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGD 74 (201)
T ss_dssp CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 34444444444555554544444444444444444444444444444443
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=87.90 E-value=11 Score=31.41 Aligned_cols=17 Identities=12% Similarity=0.016 Sum_probs=6.3
Q ss_pred CCcchHHHHHHHHHhcC
Q 048358 212 TTIVSWTAMISGYTHIG 228 (541)
Q Consensus 212 ~~~~~~~~l~~~~~~~g 228 (541)
++...-...+.++.+.+
T Consensus 155 ~~~~vr~~a~~aL~~~~ 171 (211)
T 3ltm_A 155 EDGWVRQSAADALGEIG 171 (211)
T ss_dssp SSHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 33333333333333333
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=87.45 E-value=11 Score=32.63 Aligned_cols=54 Identities=11% Similarity=0.131 Sum_probs=34.2
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 048358 324 GLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKR 378 (541)
Q Consensus 324 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 378 (541)
...+.|+.++++.....-++.. |-|...-..++..+|-.|+++.|.+-++...+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3445666777776666666654 55555556666667777777777666666654
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=87.39 E-value=11 Score=41.15 Aligned_cols=162 Identities=9% Similarity=0.001 Sum_probs=93.6
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHH
Q 048358 188 NLISGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLEL 267 (541)
Q Consensus 188 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 267 (541)
.++..+.+.+..+.+.++...... ++...-.+..+|...|++++|...|.+.- .|+..+.... .....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa-~~~~~~~~l~----------~~~~~ 884 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQF----------AVLRE 884 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CSCTTCCCSC----------SSHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHh-hhhcccchhh----------hhhcc
Confidence 355556666777777666555543 33333456677777888888888887653 1222111000 00000
Q ss_pred HHHHHHHHHHhC--CCccHhHHHHHHHHHHhcCCHHHHHHHHHcc----CCCCh----hHHHHHHHHHHhcCChHHHHHH
Q 048358 268 GEWIHMYCDKNH--LLRRTVICNALIEMYIKCGCINQASQLFDQM----VERDV----VSWSTVIGGLANHGKAHKAIHL 337 (541)
Q Consensus 268 a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~----~~~~~l~~~~~~~~~~~~a~~~ 337 (541)
+..+.... ...-..-|..++..+.+.|.++.+.++-... ...+. ..|..+...+...|++++|...
T Consensus 885 ----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~a 960 (1139)
T 4fhn_B 885 ----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVA 960 (1139)
T ss_dssp ----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHH
T ss_pred ----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHH
Confidence 00111110 0112335677788888888888777665543 12221 2578888899999999999998
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCcHH
Q 048358 338 FHEMQRLKVPPNDITFIGLLSACAHTGFWN 367 (541)
Q Consensus 338 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 367 (541)
+..+..... -...+..|+...|..|..+
T Consensus 961 L~~~pd~~~--r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 961 LMVLSTTPL--KKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp HHHHHHSSS--CHHHHHHHHHHHHHHCCHH
T ss_pred HHhCCCHHH--HHHHHHHHHHHHHhCCChh
Confidence 888776543 3456667777777666544
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=87.33 E-value=6.1 Score=28.01 Aligned_cols=88 Identities=10% Similarity=-0.019 Sum_probs=59.8
Q ss_pred ChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 048358 264 SLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQR 343 (541)
Q Consensus 264 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 343 (541)
..++|..+-+.+...+. ...+--.=+..+.+.|++++|..+.+...-||...|-+|-. .+.|-.+++...+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 34555555555554443 12222222455778899999999999999999998887754 467888888888888888
Q ss_pred CCCCCCHHHHHHH
Q 048358 344 LKVPPNDITFIGL 356 (541)
Q Consensus 344 ~~~~p~~~~~~~l 356 (541)
.| .|....|..=
T Consensus 97 sg-~p~~q~Fa~g 108 (115)
T 2uwj_G 97 SS-DPALADFAAG 108 (115)
T ss_dssp CS-SHHHHHHHHH
T ss_pred CC-CHHHHHHHHH
Confidence 87 6666666543
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=87.04 E-value=19 Score=33.47 Aligned_cols=288 Identities=11% Similarity=0.024 Sum_probs=134.1
Q ss_pred HHHHHHHHHcCCChHHHHHHHhhcCC--------CChhhHHHHHHHHHhcC-CHHHHHHHHhcC----CCCC-cc----h
Q 048358 155 ENALLDLYGKCDELIEAHKVFEEMTD--------RDIVAWNNLISGYARLG-QMKKARMLFDKM----PYTT-IV----S 216 (541)
Q Consensus 155 ~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~----~~~~-~~----~ 216 (541)
...|...|.+.|+.++..+++..... ........+++.+.... ..+.-.++.... ...+ .+ .
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l 101 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777778888877777777654 12233444555554422 222222222221 1111 11 1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH-----HHHHHHHHHHccCChHHHHHHHHHHHHh--CCCccHhHHHH
Q 048358 217 WTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEI-----SIVSVLPACAQLGSLELGEWIHMYCDKN--HLLRRTVICNA 289 (541)
Q Consensus 217 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 289 (541)
=..++..|...|++.+|.+++.++.+.--+.|.. .+..-+..|...+++.++...+...... .+.+++.+...
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 1246777888888888888887776642222222 1223334445555555555555544332 11111211111
Q ss_pred HHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHH-hcCChHHHHHHHHHHH----hCCCCC---CHHHHHHHHHHHh
Q 048358 290 LIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLA-NHGKAHKAIHLFHEMQ----RLKVPP---NDITFIGLLSACA 361 (541)
Q Consensus 290 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~m~----~~~~~p---~~~~~~~l~~~~~ 361 (541)
+ ...-...+. ..+++..|...|-+.. +.| .| +...|..+.....
T Consensus 182 i---------------------------~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~-~~~~~~~lkYlvL~aLl~ 233 (394)
T 3txn_A 182 L---------------------------DLQSGILHAADERDFKTAFSYFYEAFEGFDSVD-SVKALTSLKYMLLCKIML 233 (394)
T ss_dssp H---------------------------HHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHT
T ss_pred H---------------------------HHHhhHHHHHhccCHHHHHHHHHHHHhcccccc-cHHHHHHHHHHHHHHHHc
Confidence 0 001111233 3445555544443332 111 11 1223433333222
Q ss_pred ccCcHHHHHHHH-HHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHhhcCCHHHHH
Q 048358 362 HTGFWNEGLMYF-DSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM--PMKPDAKIWGSLLSSCRTYSNLEIAV 438 (541)
Q Consensus 362 ~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~ 438 (541)
. . ..+.-.++ ....... ..|....+..++.+| +.+++.+..++++.. .+..|......+-..+. .=.+.+
T Consensus 234 ~-~-r~el~~~l~~~~~~~~-~~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~--~Ir~~~- 306 (394)
T 3txn_A 234 G-Q-SDDVNQLVSGKLAITY-SGRDIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYD--TMLEQN- 306 (394)
T ss_dssp T-C-GGGHHHHHHSHHHHTT-CSHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHH--HHHHHH-
T ss_pred C-C-HHHHHHHhcccccccc-CCccHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHH--HHHHHH-
Confidence 1 2 11111221 1111111 246666666677665 456787777777776 23445543221111110 011122
Q ss_pred HHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 048358 439 IAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSM 483 (541)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 483 (541)
+.++. .|-..-.+..++..+.- ..++++..+-+|...|.
T Consensus 307 --L~~i~--~pYsrIsl~~iA~~l~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 307 --LCRII--EPYSRVQVAHVAESIQL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp --HHHHH--TTCSEEEHHHHHHHHTC--CHHHHHHHHHHHHHTTS
T ss_pred --HHHHh--HhhceeeHHHHHHHHCc--CHHHHHHHHHHHHHCCC
Confidence 22222 35556677777777654 78899999999988774
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=86.79 E-value=6.7 Score=27.88 Aligned_cols=88 Identities=14% Similarity=0.108 Sum_probs=59.3
Q ss_pred ChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 048358 264 SLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQR 343 (541)
Q Consensus 264 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 343 (541)
..++|..+-+.+...+. ...+--.=+..+.+.|++++|..+.+...-||...|-+|-. .+.|-.+++...+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 34555555555554443 12222222455778899999999999999999998887754 456778888888888888
Q ss_pred CCCCCCHHHHHHH
Q 048358 344 LKVPPNDITFIGL 356 (541)
Q Consensus 344 ~~~~p~~~~~~~l 356 (541)
.| .|....|..=
T Consensus 98 sg-~p~~q~Fa~g 109 (116)
T 2p58_C 98 SQ-DPRIQTFVNG 109 (116)
T ss_dssp CC-CHHHHHHHHH
T ss_pred CC-CHHHHHHHHH
Confidence 77 6666665543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.71 E-value=5.4 Score=40.74 Aligned_cols=52 Identities=17% Similarity=0.156 Sum_probs=34.0
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 048358 324 GLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSM 376 (541)
Q Consensus 324 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 376 (541)
-+...|+++-|+++-++....- |-+-.+|..|..+|...|+++.|+-.+..+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3445677777777777666643 444566777777777777777777666666
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=85.30 E-value=15 Score=30.49 Aligned_cols=11 Identities=27% Similarity=0.229 Sum_probs=4.1
Q ss_pred HHHHHHHcCCC
Q 048358 157 ALLDLYGKCDE 167 (541)
Q Consensus 157 ~l~~~~~~~g~ 167 (541)
..+..+.+.|+
T Consensus 38 ~A~~~L~~~~~ 48 (211)
T 3ltm_A 38 AAAYALGKIGD 48 (211)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHhCC
Confidence 33333333333
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.90 E-value=9.5 Score=31.40 Aligned_cols=55 Identities=7% Similarity=0.022 Sum_probs=37.2
Q ss_pred cCCHHHHHHHHHHHhcc--CCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCcc
Q 048358 431 YSNLEIAVIAMEHLLVL--EPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKK 485 (541)
Q Consensus 431 ~~~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 485 (541)
.++...+..+|..|... +...+..|...+..+...|++.+|.++++.=.+.+..|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 44466777777777653 35556677777777777777777777777776666554
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=83.95 E-value=5.1 Score=30.34 Aligned_cols=64 Identities=13% Similarity=0.165 Sum_probs=50.9
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHH
Q 048358 330 KAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDL 395 (541)
Q Consensus 330 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 395 (541)
+.-+..+-++.+...++.|++......+.+|.+.+++..|..+|+.++.+. .+...+|..++.-
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHHH
Confidence 445566677777888899999999999999999999999999999998764 3445567766643
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=82.64 E-value=27 Score=38.08 Aligned_cols=142 Identities=10% Similarity=0.035 Sum_probs=76.6
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCC---------------------
Q 048358 255 VLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVER--------------------- 313 (541)
Q Consensus 255 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------------- 313 (541)
++..+...+..+.+..+.... +.++...-.++.+|...|++++|..+|.+....
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 334444555555544433222 223333445667778888888888888776220
Q ss_pred -----ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCC
Q 048358 314 -----DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPND----ITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEH 384 (541)
Q Consensus 314 -----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 384 (541)
-..-|..++..+-+.+.++.+.++-+..++..-+.+. ..|..+..++...|++++|...+-.+... .-
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~---~~ 969 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT---PL 969 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS---SS
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH---HH
Confidence 0012455666666677777777666655543211111 13556666677777777776666555432 12
Q ss_pred cHhHHHHHHHHHHhcCCHHH
Q 048358 385 KIEHYGCLVDLLGRAGRLDQ 404 (541)
Q Consensus 385 ~~~~~~~l~~~~~~~g~~~~ 404 (541)
-......|+..++..|..+.
T Consensus 970 r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHhCCChhh
Confidence 23445556665555554433
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=82.40 E-value=3.5 Score=35.74 Aligned_cols=50 Identities=12% Similarity=0.113 Sum_probs=24.6
Q ss_pred hhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHh
Q 048358 429 RTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLI 478 (541)
Q Consensus 429 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 478 (541)
.+.|++++|+..+..-++.+|.|...-..|...++-.|+|+.|.+-++..
T Consensus 8 l~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~ 57 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQS 57 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34445555555555555545555555555555555555555554444433
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=81.99 E-value=12 Score=26.80 Aligned_cols=59 Identities=17% Similarity=0.211 Sum_probs=40.9
Q ss_pred CHHHHHHHHHhC---CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHH
Q 048358 401 RLDQALNIIEEM---PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLS 459 (541)
Q Consensus 401 ~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 459 (541)
+.-+..+-++.+ ..-|++......+.+|.+.+++..|.++++-+...-.+....|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 333444444443 56688888889999999999999999999888765444344565554
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=81.25 E-value=58 Score=34.26 Aligned_cols=253 Identities=11% Similarity=-0.050 Sum_probs=135.1
Q ss_pred HHHHhcCCHHHHHHHHhcCCCC----Cc--chHHHHHHHHHhcCChHHHHHHHHHHHHCCC-------CCChHHHHHHHH
Q 048358 191 SGYARLGQMKKARMLFDKMPYT----TI--VSWTAMISGYTHIGSYAEALDVFRQMQMVGI-------EPDEISIVSVLP 257 (541)
Q Consensus 191 ~~~~~~~~~~~A~~~~~~~~~~----~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-------~p~~~~~~~ll~ 257 (541)
-+....|+.+++..+++..... +. ..-..+.-+....|...++..++...+...- .+....-..+--
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 3466788888999998877642 22 2222344455666666678887777665321 011122223333
Q ss_pred HHHccCC-hHHHHHHHHHHHHhCCCc-cHhHHHHHHHHHHhcCCHHHHHHHHHccCC-CChhH--HHHHHHHHHhcCChH
Q 048358 258 ACAQLGS-LELGEWIHMYCDKNHLLR-RTVICNALIEMYIKCGCINQASQLFDQMVE-RDVVS--WSTVIGGLANHGKAH 332 (541)
Q Consensus 258 ~~~~~~~-~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~--~~~l~~~~~~~~~~~ 332 (541)
+++..|. -+.+...+..+....-.. ....--.|...+...|+-+....++..+.+ .+... ...+.-++...|+.+
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH
Confidence 3333342 234445555444432110 011222344556677887777777766532 22222 233334455778888
Q ss_pred HHHHHHHHHHhCCCCCCHHHH--HHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHH
Q 048358 333 KAIHLFHEMQRLKVPPNDITF--IGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIE 410 (541)
Q Consensus 333 ~a~~~~~~m~~~~~~p~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 410 (541)
.+..+.+.+.... .|....- ..+.-+|+..|+.....+++..+... ...++.....+.-++...|+.+.+.++++
T Consensus 542 ~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 542 LADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 8888888887642 2222211 23445688889988777788888763 23344433344445555677666677776
Q ss_pred hCC--CCCCHHHHHHHHHHHhhcCCH-HHHHHHHHHHhc
Q 048358 411 EMP--MKPDAKIWGSLLSSCRTYSNL-EIAVIAMEHLLV 446 (541)
Q Consensus 411 ~~~--~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~ 446 (541)
.+. ..|....-..+.-+....|+. .+++..+..+..
T Consensus 619 ~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 619 LLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 552 233333333333333333332 567777777653
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=80.35 E-value=23 Score=29.03 Aligned_cols=56 Identities=11% Similarity=0.052 Sum_probs=23.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 048358 287 CNALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQR 343 (541)
Q Consensus 287 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 343 (541)
-...+.++.+.++.+....+...+.+++..+-...+.++...|. .++...+..+..
T Consensus 124 r~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l~ 179 (201)
T 3ltj_A 124 RIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 179 (201)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 33334444444433322223333333444444444455555444 334444444443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 541 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-06 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-04 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.7 bits (112), Expect = 2e-06
Identities = 43/326 (13%), Positives = 91/326 (27%), Gaps = 16/326 (4%)
Query: 156 NALLDLYGKCDELIEAHKVFEEMTDRD---IVAWNNLISGYARLGQMKKARMLFDKMPYT 212
L ++ +C L + ++ A++NL G + + +
Sbjct: 37 LLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNL--GNVYKERGQLQEAIEHYRHAL 94
Query: 213 TIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIH 272
+ A V + V L
Sbjct: 95 RLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEA 154
Query: 273 MYCDKNHLLRR---TVICNALIEMYIKCGCINQASQLFDQMVERD---VVSWSTVIGGLA 326
C + + V + L ++ G I A F++ V D + ++ + L
Sbjct: 155 KACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLK 214
Query: 327 NHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKI 386
+A+ + L + L G + + + H
Sbjct: 215 EARIFDRAVAAYLRALSLSPNHAVV-HGNLACVYYEQGLIDLAIDTYRRAIELQ--PHFP 271
Query: 387 EHYGCLVDLLGRAGRLDQALNIIEE--MPMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHL 444
+ Y L + L G + +A + A +L + R N+E AV
Sbjct: 272 DAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKA 331
Query: 445 LVLEPEDTGNYVLLSNIYAKHGRWED 470
L + PE + L+++ + G+ ++
Sbjct: 332 LEVFPEFAAAHSNLASVLQQQGKLQE 357
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.2 bits (95), Expect = 3e-04
Identities = 24/184 (13%), Positives = 60/184 (32%), Gaps = 8/184 (4%)
Query: 288 NALIEMYIKCGCINQASQLFDQMVERD---VVSWSTVIGGLANHGKAHKAIHLFHEMQRL 344
L + + ++A + + + V + G AI + L
Sbjct: 207 INLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266
Query: 345 KVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQ 404
+ P + L +A G E ++ + L ++ G +++
Sbjct: 267 Q-PHFPDAYCNLANALKEKGSVAEAEDCYN--TALRLCPTHADSLNNLANIKREQGNIEE 323
Query: 405 ALNIIEE-MPMKPD-AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIY 462
A+ + + + + P+ A +L S + L+ A++ + + + P Y + N
Sbjct: 324 AVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 383
Query: 463 AKHG 466
+
Sbjct: 384 KEMQ 387
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 541 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.94 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.94 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.7 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.64 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.3 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.29 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.29 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.22 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.2 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.18 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.14 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.14 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.12 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.06 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.0 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.99 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.86 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.85 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.83 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.83 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.79 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.75 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.75 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.73 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.71 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.7 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.68 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.66 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.62 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.6 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.58 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.55 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.54 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.54 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.45 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.42 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.37 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.37 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.31 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.3 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.22 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.19 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.17 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.11 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.0 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.95 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.93 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.89 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.89 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.84 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.83 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.76 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.6 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.46 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 97.3 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.12 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.77 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.59 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.09 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.65 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.65 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 92.67 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 88.1 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 82.12 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.6e-23 Score=200.00 Aligned_cols=378 Identities=13% Similarity=0.064 Sum_probs=262.2
Q ss_pred HHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHH
Q 048358 84 IRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYG 163 (541)
Q Consensus 84 l~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 163 (541)
...+.+.|++++|++.|+++.+.. |-+...+..+..++.+.|++++|...++.+++.. +.+..++..+..+|.
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~ 78 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQE------PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYK 78 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhh
Confidence 445566666666666666666653 3345556666666666666666666666666654 224455555666666
Q ss_pred cCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048358 164 KCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMV 243 (541)
Q Consensus 164 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 243 (541)
+.|++++|...+......+ ..+...+..........+....+..........
T Consensus 79 ~~g~~~~A~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (388)
T d1w3ba_ 79 ERGQLQEAIEHYRHALRLK----------------------------PDFIDGYINLAAALVAAGDMEGAVQAYVSALQY 130 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHC----------------------------TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH
T ss_pred hhccccccccccccccccc----------------------------ccccccccccccccccccccccccccccccccc
Confidence 6666666665555543211 112222333333344444444444444444433
Q ss_pred CCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHH
Q 048358 244 GIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE---RDVVSWST 320 (541)
Q Consensus 244 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 320 (541)
. .................+....+...+....... +.+...+..+...+...|++++|...+.+..+ .+..+|..
T Consensus 131 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 208 (388)
T d1w3ba_ 131 N-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYIN 208 (388)
T ss_dssp C-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred c-cccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHH
Confidence 2 3333344444445555666666666666555543 33456677777788888888888888876632 35567788
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcC
Q 048358 321 VIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAG 400 (541)
Q Consensus 321 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 400 (541)
+...+...|++++|...+++....+ +.+...+..+...+...|++++|+..|+++.+. .+.+...+..+...+...|
T Consensus 209 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~ 285 (388)
T d1w3ba_ 209 LGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKG 285 (388)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHS
T ss_pred HhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 8888888889999998888887765 566677778888888889999999999888764 2556777888889999999
Q ss_pred CHHHHHHHHHhC--CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHh
Q 048358 401 RLDQALNIIEEM--PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLI 478 (541)
Q Consensus 401 ~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 478 (541)
++++|.+.++.. ..+.+...+..+...+...|++++|+..++++++..|+++.++..++.+|.+.|++++|...+++.
T Consensus 286 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 365 (388)
T d1w3ba_ 286 SVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA 365 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999988877 233467788888888899999999999999999999999999999999999999999999999887
Q ss_pred hhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhc
Q 048358 479 RSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDR 527 (541)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 527 (541)
.+ ++|+++.++..||++|.++|+
T Consensus 366 l~--------------------------l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 366 IR--------------------------ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HT--------------------------TCTTCHHHHHHHHHHHHHTCC
T ss_pred HH--------------------------hCCCCHHHHHHHHHHHHHcCC
Confidence 64 578889999999999988764
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=2.3e-23 Score=198.89 Aligned_cols=376 Identities=10% Similarity=0.026 Sum_probs=286.6
Q ss_pred HHHHHHcCCChHHHHHHHhcCCC--C-CcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHh
Q 048358 52 MIDVCNSGGDLAYASLLFKQVKE--P-NVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCA 128 (541)
Q Consensus 52 l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~ 128 (541)
+...+-+.|++++|.+.++++.+ | +...+..+..++.+.|++++|+..|++..+.. |.+..++..+..++.
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------p~~~~a~~~l~~~~~ 78 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN------PLLAEAYSNLGNVYK 78 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHhh
Confidence 45567788999999999999864 4 56788999999999999999999999999875 566788999999999
Q ss_pred ccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhc
Q 048358 129 GLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDK 208 (541)
Q Consensus 129 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 208 (541)
..|++++|...+....+.... +..............+....+.........
T Consensus 79 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 129 (388)
T d1w3ba_ 79 ERGQLQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQ---------------------------- 129 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHH----------------------------
T ss_pred hhccccccccccccccccccc-cccccccccccccccccccccccccccccc----------------------------
Confidence 999999999999999987633 344444444444444444444333322211
Q ss_pred CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHH
Q 048358 209 MPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICN 288 (541)
Q Consensus 209 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 288 (541)
...................+....+...+.+..... +-+...+..+...+...|+++.|...+..+.+.. +.+...+.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 207 (388)
T d1w3ba_ 130 YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYI 207 (388)
T ss_dssp HCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred cccccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHH
Confidence 011122233334444455555555555555555442 2234455555566666666666666666666554 33466777
Q ss_pred HHHHHHHhcCCHHHHHHHHHccC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc
Q 048358 289 ALIEMYIKCGCINQASQLFDQMV---ERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGF 365 (541)
Q Consensus 289 ~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 365 (541)
.+...+...|++++|...+.... ..+...+..+...+...|++++|...|++..+.. +-+..++..+..++...|+
T Consensus 208 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~ 286 (388)
T d1w3ba_ 208 NLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGS 286 (388)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSC
T ss_pred HHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 78888888888888888887763 3456677888889999999999999999998875 5567788899999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 048358 366 WNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEH 443 (541)
Q Consensus 366 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 443 (541)
+++|.+.++..... .+.+...+..+...+...|++++|++.|++. .+.| +..++..+..++...|++++|+..|++
T Consensus 287 ~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 364 (388)
T d1w3ba_ 287 VAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 364 (388)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHhhhcc--CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999998874 4677788899999999999999999999986 6677 467888899999999999999999999
Q ss_pred HhccCCCCcchHHHHHHHHHhcCC
Q 048358 444 LLVLEPEDTGNYVLLSNIYAKHGR 467 (541)
Q Consensus 444 ~~~~~~~~~~~~~~l~~~~~~~g~ 467 (541)
+++++|+++.+|..++.+|.+.||
T Consensus 365 al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 365 AIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999998886
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=1.8e-15 Score=139.75 Aligned_cols=278 Identities=14% Similarity=0.028 Sum_probs=187.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcC
Q 048358 219 AMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCG 298 (541)
Q Consensus 219 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 298 (541)
.....+.+.|++++|+..|+++++.. +-+..+|..+..++...|+++.|...+..+.+.. +.+...+..++.+|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 45667788888888888888888763 3345566666666777777777777777666654 234555666666666666
Q ss_pred CHHHHHHHHHccCCCChh---HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 048358 299 CINQASQLFDQMVERDVV---SWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDS 375 (541)
Q Consensus 299 ~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 375 (541)
++++|.+.+......++. .+....... ...+.......+..+...+.+.++...|..
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAHLVTPAEEGA--------------------GGAGLGPSKRILGSLLSDSLFLEVKELFLA 161 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhccchHHHHHhhhhhh--------------------hhcccccchhhHHHHHHhhHHHHHHHHHHH
Confidence 666666666554221110 000000000 000000111112233344667788888888
Q ss_pred hhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcc
Q 048358 376 MKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTG 453 (541)
Q Consensus 376 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 453 (541)
..+...-.++...+..+...+...|++++|+..|++. ...| +..+|..+...+...|++++|++.++++++.+|.++.
T Consensus 162 al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 241 (323)
T d1fcha_ 162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR 241 (323)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHH
Confidence 7765444456777888999999999999999999987 4445 5788889999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCcc
Q 048358 454 NYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVID 533 (541)
Q Consensus 454 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 533 (541)
+|..++.+|.+.|++++|.+.|++..+..... ++. + ....+....++..|+..+..+++.+.+..
T Consensus 242 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-~~~-~-------------~~~~~~~~~~~~~l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 242 SRYNLGISCINLGAHREAVEHFLEALNMQRKS-RGP-R-------------GEGGAMSENIWSTLRLALSMLGQSDAYGA 306 (323)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC---------------------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcC-hhh-h-------------hhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999987642211 000 0 11334456778889999998888765543
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=4e-14 Score=130.59 Aligned_cols=269 Identities=12% Similarity=0.065 Sum_probs=197.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHc
Q 048358 185 AWNNLISGYARLGQMKKARMLFDKMPY---TTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQ 261 (541)
Q Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 261 (541)
..-.....+.+.|++++|...|+++.+ .++.+|..+..++...|++++|...|.+..+.. +-+...+..+...+..
T Consensus 21 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~ 99 (323)
T d1fcha_ 21 QPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTN 99 (323)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccc
Confidence 334567778999999999999998753 356789999999999999999999999998764 3456778888889999
Q ss_pred cCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 048358 262 LGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEM 341 (541)
Q Consensus 262 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 341 (541)
.|+++.|...+..+....... ...+....... ...+.......+..+...+.+.+|...+.+.
T Consensus 100 ~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 162 (323)
T d1fcha_ 100 ESLQRQACEILRDWLRYTPAY-AHLVTPAEEGA----------------GGAGLGPSKRILGSLLSDSLFLEVKELFLAA 162 (323)
T ss_dssp TTCHHHHHHHHHHHHHTSTTT-GGGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhhHHHhccch-HHHHHhhhhhh----------------hhcccccchhhHHHHHHhhHHHHHHHHHHHH
Confidence 999999999999988754221 11110000000 0001111111222334456677888888887
Q ss_pred HhCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CH
Q 048358 342 QRLK-VPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DA 418 (541)
Q Consensus 342 ~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~ 418 (541)
.... -.++...+..+...+...|++++|+..|+...... +.+...|..+...|...|++++|.+.|++. ...| +.
T Consensus 163 l~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 240 (323)
T d1fcha_ 163 VRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYI 240 (323)
T ss_dssp HHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc--cccccchhhhhhcccccccchhHHHHHHHHHHHhhccH
Confidence 6643 13456677888889999999999999999998753 556788999999999999999999999987 5556 56
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcc-----------hHHHHHHHHHhcCCHHHHHH
Q 048358 419 KIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTG-----------NYVLLSNIYAKHGRWEDVSR 473 (541)
Q Consensus 419 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~~g~~~~A~~ 473 (541)
.+|..+..+|.+.|++++|+..|++++++.|.+.. .|..+..++...|+.+.+..
T Consensus 241 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 241 RSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 306 (323)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 78999999999999999999999999998877654 34556667777777665543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=3e-11 Score=109.90 Aligned_cols=193 Identities=10% Similarity=0.123 Sum_probs=135.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHccCC--C-ChhHHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048358 285 VICNALIEMYIKCGCINQASQLFDQMVE--R-DVVSWSTVIGGLANHG-KAHKAIHLFHEMQRLKVPPNDITFIGLLSAC 360 (541)
Q Consensus 285 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 360 (541)
.+++.+...+.+.+.+++|+.+++++.+ | +..+|+....++...| ++++|+..+++..+.. +-+..+|..+...+
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHH
Confidence 3556666667777777777777777743 3 4456677777776665 4778888887777664 55667777777777
Q ss_pred hccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCC-----
Q 048358 361 AHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSN----- 433 (541)
Q Consensus 361 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~----- 433 (541)
...|++++|+..++++.+.. +.+...|..+...+...|++++|++.++.+ .+.| +...|+.+...+.+.+.
T Consensus 123 ~~l~~~~eAl~~~~kal~~d--p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQD--AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HhhccHHHHHHHHhhhhhhh--hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhh
Confidence 77788888888888777643 556777777778888888888888877777 4555 45666666655544443
Q ss_pred -HHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 434 -LEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 434 -~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
+++|+..+.++++.+|.+..+|..++..+...| .+++.+.++...+.
T Consensus 201 ~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l 248 (315)
T d2h6fa1 201 VLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDL 248 (315)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHh
Confidence 678888888888888888888888877665444 56677777766543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=1.5e-11 Score=111.97 Aligned_cols=164 Identities=9% Similarity=0.062 Sum_probs=142.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-cHHHHHHHHHHhhhhcCCCCcHhHHHHHHH
Q 048358 316 VSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTG-FWNEGLMYFDSMKRDHHIEHKIEHYGCLVD 394 (541)
Q Consensus 316 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 394 (541)
.+++.+...+.+.+.+++|+.+++++++.+ |-+...|+....++...| ++++|+..++.+.+.. +.+..+|..+..
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~--p~~~~a~~~~~~ 120 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH--HhhhhHHHHHhH
Confidence 366777788889999999999999999975 556667788888877766 5999999999998853 667889999999
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC-----
Q 048358 395 LLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGR----- 467 (541)
Q Consensus 395 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----- 467 (541)
.+.+.|++++|++.++++ ...| +...|..+...+...|++++|+..++++++++|.+..+|+.++.++.+.|.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhh
Confidence 999999999999999998 5556 689999999999999999999999999999999999999999999888776
Q ss_pred -HHHHHHHHHHhhhCC
Q 048358 468 -WEDVSRMRKLIRSKS 482 (541)
Q Consensus 468 -~~~A~~~~~~m~~~~ 482 (541)
+++|.+.+.+..+..
T Consensus 201 ~~~~ai~~~~~al~~~ 216 (315)
T d2h6fa1 201 VLEREVQYTLEMIKLV 216 (315)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred hhHHhHHHHHHHHHhC
Confidence 578888888776643
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.29 E-value=9.3e-10 Score=101.93 Aligned_cols=259 Identities=12% Similarity=-0.013 Sum_probs=176.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCh------HHHHHHHHHHHccCChHHHHHHHHHHHHhCCC-----ccHhHHH
Q 048358 220 MISGYTHIGSYAEALDVFRQMQMVGIEPDE------ISIVSVLPACAQLGSLELGEWIHMYCDKNHLL-----RRTVICN 288 (541)
Q Consensus 220 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~ 288 (541)
....+...|++++|+.++++.++.. |+. ..+..+...+...|+++.|...+..+.+.... .....+.
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~--~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 95 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEEL--PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 95 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTC--CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC--cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 3455667777777777777776542 221 24445556677777777777777766543111 1133456
Q ss_pred HHHHHHHhcCCHHHHHHHHHccCC-------C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC----CCCCHHHH
Q 048358 289 ALIEMYIKCGCINQASQLFDQMVE-------R----DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLK----VPPNDITF 353 (541)
Q Consensus 289 ~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~----~~p~~~~~ 353 (541)
.+...+...|++..+...+..... + ....+..+...+...|+++.+...+....... ......++
T Consensus 96 ~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 175 (366)
T d1hz4a_ 96 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 175 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHH
Confidence 667778888888888877766521 1 12245566778888999999999888876532 12223445
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhhhhcCCC---C--cHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-----CHHHHH
Q 048358 354 IGLLSACAHTGFWNEGLMYFDSMKRDHHIE---H--KIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-----DAKIWG 422 (541)
Q Consensus 354 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-----~~~~~~ 422 (541)
......+...+++..+...+.......... + ....+..+...+...|++++|...++.. ...| ....+.
T Consensus 176 ~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 255 (366)
T d1hz4a_ 176 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 255 (366)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 556666777888888888777665422111 1 1234566777888999999999999887 2222 245566
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHhcc------CCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048358 423 SLLSSCRTYSNLEIAVIAMEHLLVL------EPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 423 ~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 480 (541)
.+..++...|++++|...+++++.. .|....++..++.+|.+.|++++|.+.+++..+
T Consensus 256 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 256 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6778899999999999999988743 244566888999999999999999999988755
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.22 E-value=2.8e-10 Score=105.60 Aligned_cols=265 Identities=12% Similarity=0.016 Sum_probs=197.5
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCcc----HhHHHHHHHHHHhcCCHHHHHHHHHccCC-----CC----hhHHHHH
Q 048358 255 VLPACAQLGSLELGEWIHMYCDKNHLLRR----TVICNALIEMYIKCGCINQASQLFDQMVE-----RD----VVSWSTV 321 (541)
Q Consensus 255 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l 321 (541)
....+...|++++|..+++...+.....+ ..++..+..+|...|++++|...|++..+ ++ ..++..+
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 97 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 34557889999999999999988643322 34677788999999999999999988743 12 2356667
Q ss_pred HHHHHhcCChHHHHHHHHHHHh----CCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHhhhhc---CCCCcHhHHHH
Q 048358 322 IGGLANHGKAHKAIHLFHEMQR----LKVPPN---DITFIGLLSACAHTGFWNEGLMYFDSMKRDH---HIEHKIEHYGC 391 (541)
Q Consensus 322 ~~~~~~~~~~~~a~~~~~~m~~----~~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~ 391 (541)
...+...|++..+...+.+... .+.++. ...+..+...+...|+++.+...+....... +.......+..
T Consensus 98 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (366)
T d1hz4a_ 98 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 177 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 7788899999999999887653 221222 2345566778889999999999998887532 12223445566
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-------CCCC--CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCc----chHHHH
Q 048358 392 LVDLLGRAGRLDQALNIIEEM-------PMKP--DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDT----GNYVLL 458 (541)
Q Consensus 392 l~~~~~~~g~~~~A~~~~~~~-------~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~l 458 (541)
....+...|++.++...+... ...+ ....+......+...|++++|...+++..+..|.+. ..+..+
T Consensus 178 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 257 (366)
T d1hz4a_ 178 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 257 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 677788889998888777654 1111 123455566668899999999999999998776543 345668
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCccccccc
Q 048358 459 SNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMYED 538 (541)
Q Consensus 459 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 538 (541)
+.++...|++++|...+++.....- ....+|....++..++.+|..+|+.++|.+.++++
T Consensus 258 a~~~~~~g~~~~A~~~~~~al~~~~--------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~A 317 (366)
T d1hz4a_ 258 ARAQILLGEFEPAEIVLEELNENAR--------------------SLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 317 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHH--------------------HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHh--------------------hcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999999999998864311 01246778889999999999999999999988876
Q ss_pred C
Q 048358 539 I 539 (541)
Q Consensus 539 i 539 (541)
+
T Consensus 318 l 318 (366)
T d1hz4a_ 318 L 318 (366)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.20 E-value=1.9e-10 Score=101.63 Aligned_cols=92 Identities=14% Similarity=0.010 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 048358 286 ICNALIEMYIKCGCINQASQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAH 362 (541)
Q Consensus 286 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 362 (541)
++..+..+|.+.|++++|...|++..+ .++.+|+.+..+|...|++++|+..|+++.+.. +-+..++..+..++..
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 117 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYY 117 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHHH
Confidence 344445555555555555555554421 244455555555555555555555555555543 3334445555555555
Q ss_pred cCcHHHHHHHHHHhhh
Q 048358 363 TGFWNEGLMYFDSMKR 378 (541)
Q Consensus 363 ~g~~~~a~~~~~~~~~ 378 (541)
.|++++|...|+...+
T Consensus 118 ~g~~~~A~~~~~~al~ 133 (259)
T d1xnfa_ 118 GGRDKLAQDDLLAFYQ 133 (259)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHh
Confidence 5555555555555554
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.18 E-value=4.8e-10 Score=98.97 Aligned_cols=200 Identities=10% Similarity=-0.031 Sum_probs=129.3
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC--C-ChhHHHHHHHHHHh
Q 048358 251 SIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE--R-DVVSWSTVIGGLAN 327 (541)
Q Consensus 251 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~ 327 (541)
++..+...+.+.|+++.|...|+.+++.. +.++.+|+.+..+|.+.|++++|...|+++.+ | +..++..+..+|..
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 117 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 117 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHH
Confidence 44445556666777777777777776654 34577888888899999999999999888743 3 56678888888999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHH
Q 048358 328 HGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALN 407 (541)
Q Consensus 328 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 407 (541)
.|++++|...|++..+.. +.+......+..++.+.+..+....+....... .+....++ ++..+...........
T Consensus 118 ~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~ 192 (259)
T d1xnfa_ 118 GGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS---DKEQWGWN-IVEFYLGNISEQTLME 192 (259)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS---CCCSTHHH-HHHHHTTSSCHHHHHH
T ss_pred HhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc---chhhhhhh-HHHHHHHHHHHHHHHH
Confidence 999999999999988764 444555444555555666655555555555442 22222222 2233222222222221
Q ss_pred H-HHhC----CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHH
Q 048358 408 I-IEEM----PMKPD-AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYV 456 (541)
Q Consensus 408 ~-~~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 456 (541)
. .... ...|+ ..+|..+...+...|++++|+..|+++++.+|++...|.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 247 (259)
T d1xnfa_ 193 RLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR 247 (259)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred HHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 1 1111 12232 356777888899999999999999999999998754443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.14 E-value=9.3e-09 Score=92.97 Aligned_cols=184 Identities=9% Similarity=0.077 Sum_probs=109.0
Q ss_pred hHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC--C-C-hhHHHHHHHHHHhcCChHHHHHHHHH
Q 048358 265 LELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE--R-D-VVSWSTVIGGLANHGKAHKAIHLFHE 340 (541)
Q Consensus 265 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 340 (541)
.+.+..+++...+...+.+...|...+..+.+.|+++.|..+|+.+.+ | + ...|...+..+.+.|+.+.|..+|++
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 355666666666554445555666666666677777777777766533 1 2 23566666666666777777777777
Q ss_pred HHhCCCCCCHHHHHHHHHH-HhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC----CCC
Q 048358 341 MQRLKVPPNDITFIGLLSA-CAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM----PMK 415 (541)
Q Consensus 341 m~~~~~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~ 415 (541)
+.+.+ +.+...|...+.. +...|+.+.|..+|+.+.+.+ +.+...|..++..+.+.|+++.|..+|++. +..
T Consensus 160 al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~--p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 160 AREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 66654 3333344333322 233466666777777666642 445566666666666666766666666664 233
Q ss_pred CC--HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC
Q 048358 416 PD--AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPED 451 (541)
Q Consensus 416 p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (541)
|+ ...|...+..-...|+.+.+..+++++.+..|..
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~ 274 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence 32 3456666665566666666666666666655543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.14 E-value=1.3e-10 Score=107.04 Aligned_cols=232 Identities=7% Similarity=-0.075 Sum_probs=166.0
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccC--ChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHH
Q 048358 225 THIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLG--SLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQ 302 (541)
Q Consensus 225 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 302 (541)
...|++++|+..++...+.. +-+...+..+..++...+ +++.+...+..+.+.........+......+...+.+++
T Consensus 84 ~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (334)
T d1dcea1 84 ESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAE 162 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHH
Confidence 34455778888888877653 335555555555555554 477888888888776543323334455677788899999
Q ss_pred HHHHHHccCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhh
Q 048358 303 ASQLFDQMVER---DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRD 379 (541)
Q Consensus 303 A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 379 (541)
|...++.+.+. +..+|+.+..++...|++++|...++..... .|+. ..+...+...+..+.+...+......
T Consensus 163 Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~ 237 (334)
T d1dcea1 163 ELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLLG 237 (334)
T ss_dssp HHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHHh
Confidence 99999988663 5668888888899999888876655544332 1221 12223344455666777777777653
Q ss_pred cCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHH
Q 048358 380 HHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVL 457 (541)
Q Consensus 380 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 457 (541)
.+++...+..+...+...|+.++|...+.+. ...| +..++..+...+...|++++|++.++++++++|.+...|..
T Consensus 238 --~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~ 315 (334)
T d1dcea1 238 --RAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 315 (334)
T ss_dssp --CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred --CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHH
Confidence 3555666777888888899999999988877 6666 45778888889999999999999999999999998889998
Q ss_pred HHHHHHh
Q 048358 458 LSNIYAK 464 (541)
Q Consensus 458 l~~~~~~ 464 (541)
|...+.-
T Consensus 316 L~~~~~~ 322 (334)
T d1dcea1 316 LRSKFLL 322 (334)
T ss_dssp HHHHHHH
T ss_pred HHHHHhH
Confidence 8877764
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.12 E-value=1e-10 Score=107.81 Aligned_cols=268 Identities=9% Similarity=-0.087 Sum_probs=193.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChHHH-H---HHHHHHH-------ccCChHHHHHHHHHHHHhCCCccHhHHH
Q 048358 220 MISGYTHIGSYAEALDVFRQMQMVGIEPDEISI-V---SVLPACA-------QLGSLELGEWIHMYCDKNHLLRRTVICN 288 (541)
Q Consensus 220 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~---~ll~~~~-------~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 288 (541)
++......+..++|++++++.++. .|+..+. + .++..+. ..|.++.+..+++.+.+.. +.+...|.
T Consensus 35 ~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~ 111 (334)
T d1dcea1 35 VFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWH 111 (334)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHH
Confidence 333333344458899999998875 6766542 2 2222222 3345678888888888765 44566777
Q ss_pred HHHHHHHhcC--CHHHHHHHHHccCC---CChhHHHH-HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 048358 289 ALIEMYIKCG--CINQASQLFDQMVE---RDVVSWST-VIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAH 362 (541)
Q Consensus 289 ~l~~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~-l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 362 (541)
.+..++...+ ++++|...+..+.+ ++...+.. ....+...+.+++|+..++.+...+ +-+...|..+..++..
T Consensus 112 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~ 190 (334)
T d1dcea1 112 HRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQ 190 (334)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHH
T ss_pred HhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 7777776665 48899998888743 34555543 4466777899999999999988876 5677888888888989
Q ss_pred cCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHhhcCCHHHHHHH
Q 048358 363 TGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMK-PDAKIWGSLLSSCRTYSNLEIAVIA 440 (541)
Q Consensus 363 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~ 440 (541)
.|++++|...+....... |.. ..+...+...+..+++...+... ... ++...+..+...+...|+.++|...
T Consensus 191 ~~~~~~A~~~~~~~~~~~---~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 264 (334)
T d1dcea1 191 LHPQPDSGPQGRLPENVL---LKE---LELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKE 264 (334)
T ss_dssp HSCCCCSSSCCSSCHHHH---HHH---HHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHhHHhH---HHH---HHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHH
Confidence 998888877666655431 221 22334455566777777776665 222 3445556666777788999999999
Q ss_pred HHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHH
Q 048358 441 MEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLEL 520 (541)
Q Consensus 441 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~ 520 (541)
+.+..+.+|.+..++..++.+|.+.|++++|.+.+++..+ ++|.....|..|+.
T Consensus 265 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~--------------------------ldP~~~~y~~~L~~ 318 (334)
T d1dcea1 265 LQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA--------------------------VDPMRAAYLDDLRS 318 (334)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH--------------------------HCGGGHHHHHHHHH
T ss_pred HHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------------------------HCcccHHHHHHHHH
Confidence 9999999999999999999999999999999999999865 46888888888877
Q ss_pred HHH
Q 048358 521 LAL 523 (541)
Q Consensus 521 ~~~ 523 (541)
.+.
T Consensus 319 ~~~ 321 (334)
T d1dcea1 319 KFL 321 (334)
T ss_dssp HHH
T ss_pred HHh
Confidence 666
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.06 E-value=1.9e-08 Score=90.84 Aligned_cols=181 Identities=9% Similarity=0.084 Sum_probs=143.8
Q ss_pred CHHHHHHHHHccCC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 048358 299 CINQASQLFDQMVE----RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFD 374 (541)
Q Consensus 299 ~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 374 (541)
..++|..+|++..+ .+...|...+..+...|+++.|..+|+++...........|...+..+.+.|+++.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 45778888887643 35667888888999999999999999999886422234568888999999999999999999
Q ss_pred HhhhhcCCCCcHhHHHHHHHH-HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC
Q 048358 375 SMKRDHHIEHKIEHYGCLVDL-LGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPED 451 (541)
Q Consensus 375 ~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (541)
.+.+.. +.+...|...+.. +...|+.+.|..+|+.+ ...| +...|...+..+...|+++.|..+|+++++..|.+
T Consensus 159 ~al~~~--~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 159 KAREDA--RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTST--TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHhC--CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 998743 4444555554443 34468999999999988 3234 57889999999999999999999999999877655
Q ss_pred cc----hHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 452 TG----NYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 452 ~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
+. .|...+..-...|+.+.+..+++++.+.
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 43 7888888888889999999999988664
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=3e-09 Score=80.47 Aligned_cols=107 Identities=13% Similarity=0.066 Sum_probs=88.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCH
Q 048358 391 CLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRW 468 (541)
Q Consensus 391 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 468 (541)
.-...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++.+|.++..|..++.++...|++
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 3466778888888988888887 4455 5677888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHH
Q 048358 469 EDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLAL 523 (541)
Q Consensus 469 ~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~ 523 (541)
++|+..+++..+ .+|+++.++..++++..
T Consensus 88 ~~A~~~~~~a~~--------------------------~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 88 EEAKRTYEEGLK--------------------------HEANNPQLKEGLQNMEA 116 (117)
T ss_dssp HHHHHHHHHHHT--------------------------TCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHhC
Confidence 999999998765 46788888888777653
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.99 E-value=1.5e-09 Score=90.27 Aligned_cols=137 Identities=12% Similarity=0.098 Sum_probs=111.1
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHH
Q 048358 393 VDLLGRAGRLDQALNIIEEMPMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVS 472 (541)
Q Consensus 393 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 472 (541)
...+...|++++|++.|+++. +|+..+|..+..++...|++++|++.|+++++++|.++.+|..++.+|.+.|++++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~-~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ-DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHH
Confidence 566788999999999999874 5788899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCcccccccCC
Q 048358 473 RMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMYEDIG 540 (541)
Q Consensus 473 ~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~i~ 540 (541)
..|++...... ..+ .+. ....+...++...+++..++.+|..+|+.++|.+.+.++++
T Consensus 91 ~~~~kAl~~~~-~n~---~~~------~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~ 148 (192)
T d1hh8a_ 91 KDLKEALIQLR-GNQ---LID------YKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 148 (192)
T ss_dssp HHHHHHHHTTT-TCS---EEE------CGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCc-cCc---hHH------HHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999876421 111 110 00011122344568889999999999999999998877653
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.86 E-value=8.2e-08 Score=79.54 Aligned_cols=141 Identities=6% Similarity=-0.113 Sum_probs=101.0
Q ss_pred HHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 048358 291 IEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGL 370 (541)
Q Consensus 291 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 370 (541)
...+...|+++.|.+.|.++..+++.+|..+..+|...|++++|++.|++.++.+ +.+...|..+..++.+.|++++|+
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHH
Confidence 5567788899999999998888888888888889999999999999999988876 666778888888888899999998
Q ss_pred HHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCC
Q 048358 371 MYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKPD-AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEP 449 (541)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 449 (541)
..|++..... +.+... .+...|. ..+++ ..++..+..++.+.|++++|.+.++++++..|
T Consensus 91 ~~~~kAl~~~--~~n~~~------~~~~~~~-----------~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~ 151 (192)
T d1hh8a_ 91 KDLKEALIQL--RGNQLI------DYKILGL-----------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 151 (192)
T ss_dssp HHHHHHHHTT--TTCSEE------ECGGGTB-----------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhC--ccCchH------HHHHhhh-----------hcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 8888876521 222100 0000000 01111 24455666677788888888888888887776
Q ss_pred CC
Q 048358 450 ED 451 (541)
Q Consensus 450 ~~ 451 (541)
..
T Consensus 152 ~~ 153 (192)
T d1hh8a_ 152 EP 153 (192)
T ss_dssp SG
T ss_pred Cc
Confidence 64
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.85 E-value=1.9e-08 Score=80.88 Aligned_cols=88 Identities=11% Similarity=0.114 Sum_probs=51.8
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHH
Q 048358 393 VDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWED 470 (541)
Q Consensus 393 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 470 (541)
...|.+.|++++|+..|++. .+.| +...|..+..++...|++++|+..|+++++++|.+..+|..++.+|...|++++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~e 96 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 96 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHH
Confidence 44555566666666666555 3333 345555555556666666666666666666666666666666666666666666
Q ss_pred HHHHHHHhhh
Q 048358 471 VSRMRKLIRS 480 (541)
Q Consensus 471 A~~~~~~m~~ 480 (541)
|...+++...
T Consensus 97 A~~~~~~a~~ 106 (159)
T d1a17a_ 97 ALRDYETVVK 106 (159)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666665543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.83 E-value=3.2e-09 Score=89.44 Aligned_cols=97 Identities=10% Similarity=0.005 Sum_probs=87.4
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHH
Q 048358 384 HKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNI 461 (541)
Q Consensus 384 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 461 (541)
|+...+......|.+.|++++|+..|++. .+.| +...|..+..+|.+.|++++|+..|+++++++|.++.+|..++.+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~ 81 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence 67777788899999999999999999887 5556 678888999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHhhh
Q 048358 462 YAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 462 ~~~~g~~~~A~~~~~~m~~ 480 (541)
|.+.|++++|...++++.+
T Consensus 82 ~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 82 QLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 9999999999999998765
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.83 E-value=2.6e-08 Score=75.08 Aligned_cols=106 Identities=16% Similarity=0.082 Sum_probs=89.2
Q ss_pred HHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCC
Q 048358 356 LLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSN 433 (541)
Q Consensus 356 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~ 433 (541)
-...+...|++++|+..|....+.. |.+...|..+..+|...|++++|+..++.. .+.| +...|..+..++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC--CcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccC
Confidence 4566778899999999999988753 667788899999999999999999999887 4444 67888899999999999
Q ss_pred HHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 048358 434 LEIAVIAMEHLLVLEPEDTGNYVLLSNIYA 463 (541)
Q Consensus 434 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 463 (541)
+++|+..++++++.+|.++.++..+.++-.
T Consensus 87 ~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 999999999999999999988888776543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.79 E-value=1.8e-08 Score=84.64 Aligned_cols=123 Identities=10% Similarity=-0.058 Sum_probs=103.9
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 048358 347 PPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSL 424 (541)
Q Consensus 347 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 424 (541)
.|+...+......+.+.|++++|+..|.+..... |.+...|..+..+|.+.|++++|+..|++. .+.| +..+|..+
T Consensus 1 ~~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~--p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~l 78 (201)
T d2c2la1 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78 (201)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHH
Confidence 3788888889999999999999999999998753 677888999999999999999999999988 7778 57889999
Q ss_pred HHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHH
Q 048358 425 LSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDV 471 (541)
Q Consensus 425 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 471 (541)
..++...|++++|+..|++++++.|.+...+...+..+...+....+
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~ 125 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRW 125 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999998887666555555555554443333
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.75 E-value=9.9e-08 Score=77.29 Aligned_cols=85 Identities=11% Similarity=-0.040 Sum_probs=71.4
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEE
Q 048358 419 KIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEV 498 (541)
Q Consensus 419 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~ 498 (541)
.+|..+..+|.+.|++++|+..++++++++|.++.+|..++.+|...|++++|...|++..+
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~------------------ 124 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ------------------ 124 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH------------------
Confidence 35666777888999999999999999999999999999999999999999999999998765
Q ss_pred EEEEeCCCCCCChhHHHHHHHHHHHHHhccc
Q 048358 499 QEFVSGDDTKPFLKDIFWLLELLALHQDRAK 529 (541)
Q Consensus 499 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 529 (541)
++|+++.+...++.+...+++..
T Consensus 125 --------l~P~n~~~~~~l~~~~~~~~~~~ 147 (170)
T d1p5qa1 125 --------LYPNNKAAKTQLAVCQQRIRRQL 147 (170)
T ss_dssp --------HCSSCHHHHHHHHHHHHHHHHHH
T ss_pred --------hCCCCHHHHHHHHHHHHHHHHHH
Confidence 46888888888888877766554
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.75 E-value=8.5e-09 Score=77.11 Aligned_cols=88 Identities=17% Similarity=0.135 Sum_probs=63.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCH
Q 048358 391 CLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRW 468 (541)
Q Consensus 391 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 468 (541)
.+...+.+.|++++|+..|++. ...| +..+|..+..++.+.|++++|+..++++++.+|.++.++..++.+|...|++
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCH
Confidence 4556667777777777777776 4445 4667777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHh
Q 048358 469 EDVSRMRKLI 478 (541)
Q Consensus 469 ~~A~~~~~~m 478 (541)
++|.+.+++.
T Consensus 101 ~~A~~~l~~~ 110 (112)
T d1hxia_ 101 NAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777777664
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.73 E-value=9e-08 Score=76.73 Aligned_cols=118 Identities=11% Similarity=0.054 Sum_probs=97.7
Q ss_pred HHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcC
Q 048358 355 GLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYS 432 (541)
Q Consensus 355 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~ 432 (541)
.-...|.+.|++++|+..|+++.+.. |.+...|..+..+|...|++++|+..|++. .+.| +..+|..+..++...|
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccc--hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence 34567788999999999999998853 667888999999999999999999999988 5556 5688999999999999
Q ss_pred CHHHHHHHHHHHhccCCCCcchHHHHHHHHH--hcCCHHHHHHH
Q 048358 433 NLEIAVIAMEHLLVLEPEDTGNYVLLSNIYA--KHGRWEDVSRM 474 (541)
Q Consensus 433 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~ 474 (541)
++++|+..++++++++|.++..+..+..+.. ..+.+++|...
T Consensus 93 ~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 93 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999988888776643 44556666654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.71 E-value=2.8e-08 Score=75.09 Aligned_cols=101 Identities=17% Similarity=0.054 Sum_probs=47.9
Q ss_pred HHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCC---HHHHHHHHHhC-CCCCCH---HHHHHHHHH
Q 048358 355 GLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGR---LDQALNIIEEM-PMKPDA---KIWGSLLSS 427 (541)
Q Consensus 355 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p~~---~~~~~l~~~ 427 (541)
.+++.+...+++++|.+.|++..... |.+..++..+..++.+.++ +++|+.+|+++ ...|+. .+|..+..+
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~--p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 34445555555555555555555432 3444555555555544332 23355555544 222221 234444444
Q ss_pred HhhcCCHHHHHHHHHHHhccCCCCcchHHH
Q 048358 428 CRTYSNLEIAVIAMEHLLVLEPEDTGNYVL 457 (541)
Q Consensus 428 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 457 (541)
|.+.|++++|+..|+++++++|++..+...
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l 111 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTEPQNNQAKEL 111 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHhCcCCHHHHHH
Confidence 555555555555555555555555444333
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.70 E-value=3e-08 Score=74.00 Aligned_cols=90 Identities=13% Similarity=0.125 Sum_probs=79.1
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhc
Q 048358 354 IGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTY 431 (541)
Q Consensus 354 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 431 (541)
......+.+.|++++|+..|++..+.. |.+...|..+..++.+.|++++|+..|++. .+.| +...|..+...|...
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccc--cccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHC
Confidence 345677888999999999999999863 557889999999999999999999999997 5566 578899999999999
Q ss_pred CCHHHHHHHHHHHh
Q 048358 432 SNLEIAVIAMEHLL 445 (541)
Q Consensus 432 ~~~~~a~~~~~~~~ 445 (541)
|+.++|++.+++.+
T Consensus 98 g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 98 HNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999864
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.68 E-value=2e-07 Score=83.12 Aligned_cols=192 Identities=8% Similarity=0.007 Sum_probs=129.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHccCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHhC----CC-CCCHHH
Q 048358 287 CNALIEMYIKCGCINQASQLFDQMVE-----RD----VVSWSTVIGGLANHGKAHKAIHLFHEMQRL----KV-PPNDIT 352 (541)
Q Consensus 287 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~-~p~~~~ 352 (541)
|......|...|++++|.+.|.+..+ .+ ..+|..+..+|.+.|++++|.+.+++..+. |- .....+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 44456778888888888888877633 12 347888888999999999999998876542 21 111345
Q ss_pred HHHHHHHHh-ccCcHHHHHHHHHHhhhh---cCCCC-cHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-------CH-
Q 048358 353 FIGLLSACA-HTGFWNEGLMYFDSMKRD---HHIEH-KIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-------DA- 418 (541)
Q Consensus 353 ~~~l~~~~~-~~g~~~~a~~~~~~~~~~---~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-------~~- 418 (541)
+..+...|. ..|++++|++.|++...- .+.++ ...++..+...|...|++++|++.|+++ ...| ..
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 199 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence 566666664 469999999999887542 11112 2455788899999999999999999886 1111 11
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcc-----hHHHHHHHHHh--cCCHHHHHHHHHHh
Q 048358 419 KIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTG-----NYVLLSNIYAK--HGRWEDVSRMRKLI 478 (541)
Q Consensus 419 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~l~~~~~~--~g~~~~A~~~~~~m 478 (541)
..+...+..+...|+++.|...++++.+.+|..+. ....++.++.. .+.+++|+..|+.+
T Consensus 200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 23344555677899999999999999998875433 34455556555 34588888877654
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.66 E-value=2.8e-07 Score=73.04 Aligned_cols=84 Identities=15% Similarity=0.027 Sum_probs=76.2
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEE
Q 048358 419 KIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEV 498 (541)
Q Consensus 419 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~ 498 (541)
.+|..+..+|.+.|++++|+..++++++.+|.+..+|..++.+|...|++++|...|++..+
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~------------------ 129 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS------------------ 129 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH------------------
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH------------------
Confidence 46777888899999999999999999999999999999999999999999999999999875
Q ss_pred EEEEeCCCCCCChhHHHHHHHHHHHHHhcc
Q 048358 499 QEFVSGDDTKPFLKDIFWLLELLALHQDRA 528 (541)
Q Consensus 499 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 528 (541)
++|+++++...++.+..++++.
T Consensus 130 --------l~P~n~~~~~~l~~~~~kl~~~ 151 (153)
T d2fbna1 130 --------LNPNNLDIRNSYELCVNKLKEA 151 (153)
T ss_dssp --------HSTTCHHHHHHHHHHHHHHHHH
T ss_pred --------hCCCCHHHHHHHHHHHHHHHHH
Confidence 4799999999999988877654
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.62 E-value=3.9e-07 Score=81.17 Aligned_cols=173 Identities=9% Similarity=-0.073 Sum_probs=129.3
Q ss_pred CHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCcHHHHHHHH
Q 048358 299 CINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRL----KVPP-NDITFIGLLSACAHTGFWNEGLMYF 373 (541)
Q Consensus 299 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~ 373 (541)
++++|.++|. .....|...+++++|.+.|.+..+. +-++ -..+|..+..+|.+.|++++|...+
T Consensus 32 ~~~~Aa~~y~-----------~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~ 100 (290)
T d1qqea_ 32 KFEEAADLCV-----------QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (290)
T ss_dssp HHHHHHHHHH-----------HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHH-----------HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 4667776654 4577889999999999999987652 2122 2357888999999999999999999
Q ss_pred HHhhhhc---C-CCCcHhHHHHHHHHHHh-cCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHhhcCCHHHHHHH
Q 048358 374 DSMKRDH---H-IEHKIEHYGCLVDLLGR-AGRLDQALNIIEEM-------PMKP-DAKIWGSLLSSCRTYSNLEIAVIA 440 (541)
Q Consensus 374 ~~~~~~~---~-~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~ 440 (541)
+...... + ......++..+...|.. .|++++|++.+++. +..+ ...++..+...+...|++++|+..
T Consensus 101 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~ 180 (290)
T d1qqea_ 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHH
Confidence 9776531 1 11124456667777754 69999999999876 1111 135677788889999999999999
Q ss_pred HHHHhccCCCCcc-------hHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 048358 441 MEHLLVLEPEDTG-------NYVLLSNIYAKHGRWEDVSRMRKLIRSKS 482 (541)
Q Consensus 441 ~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 482 (541)
|+++....+.++. .+...+.++...|+++.|...+++..+..
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~ 229 (290)
T d1qqea_ 181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED 229 (290)
T ss_dssp HHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-
T ss_pred HHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 9999988766542 35567778888999999999999987764
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.60 E-value=1.4e-07 Score=76.41 Aligned_cols=89 Identities=15% Similarity=-0.005 Sum_probs=78.9
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcC
Q 048358 417 DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNN 496 (541)
Q Consensus 417 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~ 496 (541)
....|..+..++.+.|++++|+..++++++++|.++.+|..++.+|.+.|++++|...+++..+
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~---------------- 139 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE---------------- 139 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH----------------
Confidence 3456777888899999999999999999999999999999999999999999999999999876
Q ss_pred EEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCC
Q 048358 497 EVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDV 531 (541)
Q Consensus 497 ~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a 531 (541)
++|++..+...|..++..+++..+.
T Consensus 140 ----------l~p~n~~~~~~l~~~~~~l~~~~~~ 164 (169)
T d1ihga1 140 ----------IAPEDKAIQAELLKVKQKIKAQKDK 164 (169)
T ss_dssp ----------HCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------hCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999998887766543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=3.2e-07 Score=69.08 Aligned_cols=99 Identities=12% Similarity=0.081 Sum_probs=63.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC---cHHHHHHHHHHhhhhcCCCCc-HhHHHHHHH
Q 048358 319 STVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTG---FWNEGLMYFDSMKRDHHIEHK-IEHYGCLVD 394 (541)
Q Consensus 319 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~ 394 (541)
..+++.+...+++++|.+.|++....+ +.+..++..+..++.+.+ ++++|+.+|+++.... ..|+ ..++..+..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~-~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHH
Confidence 345666677777777777777777765 566677777777776543 3445777777766531 1122 235666777
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCCCHH
Q 048358 395 LLGRAGRLDQALNIIEEM-PMKPDAK 419 (541)
Q Consensus 395 ~~~~~g~~~~A~~~~~~~-~~~p~~~ 419 (541)
+|.+.|++++|++.|+++ .+.|+..
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~ 106 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNN 106 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCH
Confidence 777777777777777776 5556543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=2.9e-08 Score=95.89 Aligned_cols=173 Identities=13% Similarity=-0.024 Sum_probs=94.4
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHH
Q 048358 331 AHKAIHLFHEMQRLKVPPNDITFIGLLSA--CAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNI 408 (541)
Q Consensus 331 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 408 (541)
+..+.+.++...+....++..-....... ....+.++.++..+...... -+++...+..+...+.+.|+.++|...
T Consensus 65 y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l--~~~~~~~~~~lg~~~~~~~~~~~A~~~ 142 (497)
T d1ya0a1 65 FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNV--DLPCRVKSSQLGIISNKQTHTSAIVKP 142 (497)
T ss_dssp THHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------------
T ss_pred HHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--ChhhHHHHHHhHHHHHhCCCHHHHHHH
Confidence 44566666666654433433322221111 22345556665555544331 234556677778888888888888876
Q ss_pred HHhC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCC
Q 048358 409 IEEM-PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTP 487 (541)
Q Consensus 409 ~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 487 (541)
+... ...| ..++..+...+...|++++|+..|++++++.|++..+|+.|+.++...|+..+|...|.+....
T Consensus 143 ~~~al~~~~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~------ 215 (497)
T d1ya0a1 143 QSSSCSYIC-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV------ 215 (497)
T ss_dssp CCHHHHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS------
T ss_pred HHHHhCCCH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------
Confidence 6554 2112 3567777888888999999999999999999999999999999999999999999988887653
Q ss_pred ceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCc
Q 048358 488 GCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVI 532 (541)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~ 532 (541)
.|..+.++..|+.++....+..++.
T Consensus 216 --------------------~~~~~~a~~nL~~~~~~~~~~~~~~ 240 (497)
T d1ya0a1 216 --------------------KFPFPAASTNLQKALSKALESRDEV 240 (497)
T ss_dssp --------------------SBCCHHHHHHHHHHHHHHTTSCCCC
T ss_pred --------------------CCCCHHHHHHHHHHHHHhhhhhhhh
Confidence 4556677777777777666554443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.54 E-value=7.5e-07 Score=71.83 Aligned_cols=85 Identities=9% Similarity=-0.000 Sum_probs=70.0
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEE
Q 048358 419 KIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEV 498 (541)
Q Consensus 419 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~ 498 (541)
.+|..+..+|.+.|++++|+..++++++++|.+..+|..++.+|...|++++|...++++..
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~------------------ 126 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE------------------ 126 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------
Confidence 34566777788899999999999999999999999999999999999999999999988765
Q ss_pred EEEEeCCCCCCChhHHHHHHHHHHHHHhccc
Q 048358 499 QEFVSGDDTKPFLKDIFWLLELLALHQDRAK 529 (541)
Q Consensus 499 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 529 (541)
++|+++.+...++.+...+++..
T Consensus 127 --------l~P~n~~~~~~l~~~~~~~~~~~ 149 (168)
T d1kt1a1 127 --------VNPQNKAARLQIFMCQKKAKEHN 149 (168)
T ss_dssp --------SCTTCHHHHHHHHHHHHHHHHHH
T ss_pred --------hCCCCHHHHHHHHHHHHHHHhHH
Confidence 46888888888888877666543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.54 E-value=7.3e-07 Score=71.98 Aligned_cols=86 Identities=12% Similarity=0.041 Sum_probs=74.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 048358 387 EHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAK 464 (541)
Q Consensus 387 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 464 (541)
.+|+.+..+|.+.|++++|+..+++. .+.| +..++..+..++...|++++|+..|+++++++|+++.+...+..+..+
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 142 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 142 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35777889999999999999999887 5566 788899999999999999999999999999999999999999988877
Q ss_pred cCCHHHHH
Q 048358 465 HGRWEDVS 472 (541)
Q Consensus 465 ~g~~~~A~ 472 (541)
.+...+..
T Consensus 143 ~~~~~~~e 150 (170)
T d1p5qa1 143 IRRQLARE 150 (170)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.45 E-value=5.3e-05 Score=65.82 Aligned_cols=225 Identities=12% Similarity=0.052 Sum_probs=132.5
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHH
Q 048358 214 IVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEM 293 (541)
Q Consensus 214 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 293 (541)
+..+..|...+...+++++|+++|++..+.| +... +..|...
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A-----------------------------------~~~Lg~~ 43 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSG-----------------------------------CFNLGVL 43 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHH-----------------------------------HHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHH-----------------------------------HHHHHHH
Confidence 4455566666666777777777777766554 2222 2223333
Q ss_pred HHh----cCCHHHHHHHHHccCCC-ChhHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH--Hhc
Q 048358 294 YIK----CGCINQASQLFDQMVER-DVVSWSTVIGGLAN----HGKAHKAIHLFHEMQRLKVPPNDITFIGLLSA--CAH 362 (541)
Q Consensus 294 ~~~----~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~--~~~ 362 (541)
|.. ..+...|...+....+. ++.....+...+.. ..+.+.|...++.....|. +........... ...
T Consensus 44 y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~-~~a~~~l~~~~~~~~~~ 122 (265)
T d1ouva_ 44 YYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKY-AEGCASLGGIYHDGKVV 122 (265)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHCSSS
T ss_pred HHcCCCcchhHHHHHHhhcccccccccchhhccccccccccccchhhHHHHHHHhhhhhhhh-hhHHHhhcccccCCCcc
Confidence 332 23444444444444222 33333333333332 3556777777777777652 222111111111 123
Q ss_pred cCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cCCH
Q 048358 363 TGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGR----AGRLDQALNIIEEMPMKPDAKIWGSLLSSCRT----YSNL 434 (541)
Q Consensus 363 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~ 434 (541)
......+...+..... ..+...+..+...|.. ..+...+..+++...-..+......+...+.. ..++
T Consensus 123 ~~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~ 198 (265)
T d1ouva_ 123 TRDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNF 198 (265)
T ss_dssp CCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCH
T ss_pred cchhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccch
Confidence 4556666666666654 2455556666666664 45566777777766323466666666666554 5689
Q ss_pred HHHHHHHHHHhccCCCCcchHHHHHHHHHh----cCCHHHHHHHHHHhhhCCC
Q 048358 435 EIAVIAMEHLLVLEPEDTGNYVLLSNIYAK----HGRWEDVSRMRKLIRSKSM 483 (541)
Q Consensus 435 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 483 (541)
++|+..|+++.+.+ ++..+..|+.+|.+ ..+.++|.+.|++..+.|.
T Consensus 199 ~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 199 KEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 99999999998865 56788899999886 4489999999999887764
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=8.5e-08 Score=73.51 Aligned_cols=99 Identities=9% Similarity=0.133 Sum_probs=62.5
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEE
Q 048358 421 WGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQE 500 (541)
Q Consensus 421 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~ 500 (541)
+..+...+...|++++|+..|+++++++|.++.++..++.+|.+.|++++|...++++.+......
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~-------------- 72 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR-------------- 72 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST--------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccH--------------
Confidence 445556677777777777777777777777777777777777777777777777777654321100
Q ss_pred EEeCCCCCCChhHHHHHHHHHHHHHhcccCCccccccc
Q 048358 501 FVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMYED 538 (541)
Q Consensus 501 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 538 (541)
..++..+.++..+|..+..+++.++|++.+.++
T Consensus 73 -----~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~ka 105 (128)
T d1elra_ 73 -----EDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKS 105 (128)
T ss_dssp -----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 012233455666666666666666666665544
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.37 E-value=3.8e-06 Score=67.53 Aligned_cols=93 Identities=11% Similarity=0.027 Sum_probs=77.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 048358 387 EHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAK 464 (541)
Q Consensus 387 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 464 (541)
..|+.+..+|.+.|++++|+..++.. .+.| +..+|..+..++...|++++|+..|+++++++|+++.+...+..+..+
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34667888999999999999999987 4445 678899999999999999999999999999999999999999888877
Q ss_pred cCCHHH-HHHHHHHhh
Q 048358 465 HGRWED-VSRMRKLIR 479 (541)
Q Consensus 465 ~g~~~~-A~~~~~~m~ 479 (541)
.+...+ ..+++..|-
T Consensus 145 ~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 145 AKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHH
Confidence 765543 445555443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.37 E-value=2.7e-06 Score=68.60 Aligned_cols=88 Identities=13% Similarity=0.064 Sum_probs=75.7
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHH
Q 048358 384 HKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNI 461 (541)
Q Consensus 384 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 461 (541)
.....|..+..++.+.|++++|+..+++. .+.| +..+|..+..++...|++++|+..|+++++++|+++.++..+..+
T Consensus 75 ~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~ 154 (169)
T d1ihga1 75 VALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKV 154 (169)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34566788899999999999999999988 6667 678899999999999999999999999999999999998888887
Q ss_pred HHhcCCHHHH
Q 048358 462 YAKHGRWEDV 471 (541)
Q Consensus 462 ~~~~g~~~~A 471 (541)
..+.....++
T Consensus 155 ~~~l~~~~~~ 164 (169)
T d1ihga1 155 KQKIKAQKDK 164 (169)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7665554444
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=1.1e-06 Score=66.99 Aligned_cols=92 Identities=13% Similarity=0.121 Sum_probs=75.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcc-------hHHHHH
Q 048358 389 YGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTG-------NYVLLS 459 (541)
Q Consensus 389 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~l~ 459 (541)
+..+...+.+.|++++|+..|++. .+.| +...+..+..+|.+.|++++|+..++++++++|.++. +|..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 456778888899999999998887 4455 5788888889999999999999999999998887765 455566
Q ss_pred HHHHhcCCHHHHHHHHHHhhh
Q 048358 460 NIYAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 460 ~~~~~~g~~~~A~~~~~~m~~ 480 (541)
..+...+++++|.+.+++...
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 677788899999999988754
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.30 E-value=5.6e-06 Score=65.24 Aligned_cols=127 Identities=13% Similarity=0.008 Sum_probs=90.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHH
Q 048358 317 SWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLL 396 (541)
Q Consensus 317 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 396 (541)
.+......+.+.|++.+|+..|.+....- |... ...... ...... .....+|..+..+|
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~~~-----------~~~~~~---~~~~~~-----~~~~~~~~Nla~~~ 77 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTE-----------EWDDQI---LLDKKK-----NIEISCNLNLATCY 77 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCT-----------TCCCHH---HHHHHH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cchh-----------hhhhHH---HHHhhh-----hHHHHHHhhHHHHH
Confidence 44555667777888888888887776531 1100 000000 000000 11234678899999
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 048358 397 GRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAK 464 (541)
Q Consensus 397 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 464 (541)
.+.|++++|++.++.. .+.| +..+|..+..++...|++++|+..|+++++++|.++.+...+..+..+
T Consensus 78 ~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~k 147 (153)
T d2fbna1 78 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 147 (153)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999987 5556 679999999999999999999999999999999999888877766543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.22 E-value=0.00081 Score=57.94 Aligned_cols=95 Identities=7% Similarity=-0.132 Sum_probs=64.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHhcCCC-CCcchHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCChHHHHHHH
Q 048358 182 DIVAWNNLISGYARLGQMKKARMLFDKMPY-TTIVSWTAMISGYTH----IGSYAEALDVFRQMQMVGIEPDEISIVSVL 256 (541)
Q Consensus 182 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 256 (541)
|+..+..|...+.+.+++++|.+.|++..+ .+..++..|...|.. ..+...|...+......+ .| .....+.
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~-~~--~a~~~l~ 77 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-YS--NGCHLLG 77 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CH--HHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc-cc--chhhccc
Confidence 455677788888899999999999998753 466677777777776 567888888888877665 22 2222222
Q ss_pred HHHH----ccCChHHHHHHHHHHHHhC
Q 048358 257 PACA----QLGSLELGEWIHMYCDKNH 279 (541)
Q Consensus 257 ~~~~----~~~~~~~a~~~~~~~~~~~ 279 (541)
..+. ...+.+.+...++...+.|
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g 104 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDLK 104 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred cccccccccchhhHHHHHHHhhhhhhh
Confidence 2222 2445667777777766655
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.19 E-value=6.2e-07 Score=70.11 Aligned_cols=120 Identities=9% Similarity=0.102 Sum_probs=82.1
Q ss_pred ccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Q 048358 362 HTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKPDAKIWGSLLSSCRTYSNLEIAVIAM 441 (541)
Q Consensus 362 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 441 (541)
+.+.+++|+..|+...+.. |.+...+..+..+|...+++..+.+ ..+.+++|+..|
T Consensus 9 r~~~fe~A~~~~e~al~~~--P~~~~~~~~~g~~l~~~~~~~~~~e----------------------~~~~~~~Ai~~~ 64 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISD----------------------AKQMIQEAITKF 64 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHH----------------------HHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhC--CcchHHHHHHHHHHHHhhhhhhhhH----------------------HHHHHHHHHHHH
Confidence 3445555555555555532 4445555555555544443332222 234568899999
Q ss_pred HHHhccCCCCcchHHHHHHHHHhcCC-----------HHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCC
Q 048358 442 EHLLVLEPEDTGNYVLLSNIYAKHGR-----------WEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPF 510 (541)
Q Consensus 442 ~~~~~~~~~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 510 (541)
+++++++|+++.+|..++.+|...|+ +++|.+.|++..+ ++|+
T Consensus 65 ~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~--------------------------l~P~ 118 (145)
T d1zu2a1 65 EEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--------------------------EQPD 118 (145)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--------------------------HCTT
T ss_pred HHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc--------------------------cCCC
Confidence 99999999999999999999987654 5777777777654 5788
Q ss_pred hhHHHHHHHHHHHHHhcccCC
Q 048358 511 LKDIFWLLELLALHQDRAKDV 531 (541)
Q Consensus 511 ~~~~~~~l~~~~~~~~~~~~a 531 (541)
+...+..|+......+.+.++
T Consensus 119 ~~~~~~~L~~~~ka~~~~~e~ 139 (145)
T d1zu2a1 119 NTHYLKSLEMTAKAPQLHAEA 139 (145)
T ss_dssp CHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888898888887766665553
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.17 E-value=0.0016 Score=57.50 Aligned_cols=279 Identities=13% Similarity=0.110 Sum_probs=147.3
Q ss_pred CCchhHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHH
Q 048358 43 SQSNFLVTKMIDVCNSGGDLAYASLLFKQVKEPNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPF 122 (541)
Q Consensus 43 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ 122 (541)
.||..-...+.+.|-+.|.++.|..++..+ ..|..++..+.+.++++.|.+.+.+. -+..+|..
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~-----~d~~rl~~~~v~l~~~~~avd~~~k~-----------~~~~~~k~ 74 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA-----------NSTRTWKE 74 (336)
T ss_dssp CC----------------CTTTHHHHHHHT-----TCHHHHHHHHHTTTCHHHHHHHHHHH-----------TCHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhC-----CCHHHHHHHHHhhccHHHHHHHHHHc-----------CCHHHHHH
Confidence 455555666777777888888888888754 35667777888888888887777653 34557777
Q ss_pred HHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCH
Q 048358 123 VIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTD---RDIVAWNNLISGYARLGQM 199 (541)
Q Consensus 123 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 199 (541)
+...|.+......+ .+...+...++.....++..|-..|.+++...+++.... .+...++.++..|++.+.
T Consensus 75 ~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~~- 148 (336)
T d1b89a_ 75 VCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP- 148 (336)
T ss_dssp HHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCH-
T ss_pred HHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhCh-
Confidence 77777766554433 222223334555556677888888888888888886543 455567778887777653
Q ss_pred HHHHHHHhcCC-CCC----------cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHH
Q 048358 200 KKARMLFDKMP-YTT----------IVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELG 268 (541)
Q Consensus 200 ~~A~~~~~~~~-~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 268 (541)
++-.+.+.... .-| ...|..++..|.+.|+++.|..+. ..+ .++..-....+..+.+..+.+..
T Consensus 149 ~kl~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~---i~~--~~~~~~~~~f~e~~~k~~N~e~~ 223 (336)
T d1b89a_ 149 QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM---MNH--PTDAWKEGQFKDIITKVANVELY 223 (336)
T ss_dssp HHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH---HHS--TTTTCCHHHHHHHHHHCSSTHHH
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHH---HHc--chhhhhHHHHHHHHHccCChHHH
Confidence 34444443321 111 123455556666666666665443 222 33333333444555566666655
Q ss_pred HHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 048358 269 EWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPP 348 (541)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 348 (541)
.+......+.. +...+.++......-+..+..+.+ .+.++......+++.....|
T Consensus 224 ~~~i~~yL~~~----p~~i~~lL~~v~~~~d~~r~V~~~------------------~k~~~l~li~p~Le~v~~~n--- 278 (336)
T d1b89a_ 224 YRAIQFYLEFK----PLLLNDLLMVLSPRLDHTRAVNYF------------------SKVKQLPLVKPYLRSVQNHN--- 278 (336)
T ss_dssp HHHHHHHHHHC----GGGHHHHHHHHGGGCCHHHHHHHH------------------HHTTCTTTTHHHHHHHHTTC---
T ss_pred HHHHHHHHHcC----HHHHHHHHHHhccCCCHHHHHHHH------------------HhcCCcHHHHHHHHHHHHcC---
Confidence 55555444431 233344444444444444444443 33444555555555544433
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHH
Q 048358 349 NDITFIGLLSACAHTGFWNEGLMYF 373 (541)
Q Consensus 349 ~~~~~~~l~~~~~~~g~~~~a~~~~ 373 (541)
+....+.+...|...++++.-.+..
T Consensus 279 ~~~vn~al~~lyie~~d~~~l~~~i 303 (336)
T d1b89a_ 279 NKSVNESLNNLFITEEDYQALRTSI 303 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHhCcchhHHHHHHH
Confidence 2345566666666666655443333
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=9e-06 Score=57.90 Aligned_cols=84 Identities=15% Similarity=-0.001 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC-------cchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCcee
Q 048358 418 AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPED-------TGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCS 490 (541)
Q Consensus 418 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 490 (541)
...+..+...+.+.|++++|+..|+++++..|.+ ..++..|+.++.+.|++++|...++++.+
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~---------- 74 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE---------- 74 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH----------
Confidence 3445567788899999999999999998765443 45789999999999999999999999876
Q ss_pred EEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhc
Q 048358 491 LIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDR 527 (541)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 527 (541)
++|+++.++..++.+...+++
T Consensus 75 ----------------l~P~~~~a~~Nl~~~~~~l~k 95 (95)
T d1tjca_ 75 ----------------LDPEHQRANGNLKYFEYIMAK 95 (95)
T ss_dssp ----------------HCTTCHHHHHHHHHHHHHHHC
T ss_pred ----------------hCcCCHHHHHHHHHHHHHhCc
Confidence 479999999999888776653
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.00 E-value=1.8e-06 Score=83.03 Aligned_cols=127 Identities=10% Similarity=-0.062 Sum_probs=50.0
Q ss_pred cCCHHHHHHHHHccCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 048358 297 CGCINQASQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYF 373 (541)
Q Consensus 297 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 373 (541)
.+.++.|...+....+ ++...+..+...+.+.|+.++|...+....... ...++..+...+...|++++|+..|
T Consensus 99 ~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y 175 (497)
T d1ya0a1 99 SGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYY 175 (497)
T ss_dssp HHHHHHHHHHHTC-------------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHH
Confidence 3444555554444322 233344555555555555555555554443321 1234445555555556666666666
Q ss_pred HHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHH
Q 048358 374 DSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-P-MKPDAKIWGSLLSSC 428 (541)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~ 428 (541)
++..+.. |.+...|+.+...+...|+..+|+..|.+. . ..|-..++..|...+
T Consensus 176 ~~A~~l~--P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~ 230 (497)
T d1ya0a1 176 RHAAQLV--PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHC--TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred HHHHHHC--CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 6655532 344455566666666666666666555554 2 223445555555443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.95 E-value=1.1e-05 Score=62.68 Aligned_cols=127 Identities=11% Similarity=0.065 Sum_probs=88.7
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc----------CcHHHHHHHHHHhhhhcCCCCcHhHHHHHHH
Q 048358 325 LANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHT----------GFWNEGLMYFDSMKRDHHIEHKIEHYGCLVD 394 (541)
Q Consensus 325 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 394 (541)
|-+.+.+++|...|+...+.. |.+...+..+..++... +.+++|+..|+++.+.. |.+..+|..+..
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~--P~~~~a~~~lG~ 83 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--PKKDEAVWCIGN 83 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc--chhhHHHhhHHH
Confidence 456678999999999999886 77778888888887644 44567788887777642 555667777777
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 048358 395 LLGRAGRLDQALNIIEEMPMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRM 474 (541)
Q Consensus 395 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 474 (541)
+|...|+. .++... ..+++++|.+.|+++++++|.+...+..|... .+|.++
T Consensus 84 ~y~~~g~~------------~~~~~~---------~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ka~~~ 135 (145)
T d1zu2a1 84 AYTSFAFL------------TPDETE---------AKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AKAPQL 135 (145)
T ss_dssp HHHHHHHH------------CCCHHH---------HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HTHHHH
T ss_pred HHHHcccc------------hhhHHH---------HHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------HHHHHH
Confidence 76655432 111111 12346889999999999999998777766655 356666
Q ss_pred HHHhhhCC
Q 048358 475 RKLIRSKS 482 (541)
Q Consensus 475 ~~~m~~~~ 482 (541)
+.++.+.|
T Consensus 136 ~~e~~k~~ 143 (145)
T d1zu2a1 136 HAEAYKQG 143 (145)
T ss_dssp HHHHHHSS
T ss_pred HHHHHHHh
Confidence 66665554
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.93 E-value=4.9e-05 Score=61.19 Aligned_cols=112 Identities=11% Similarity=0.053 Sum_probs=78.5
Q ss_pred HHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHH
Q 048358 357 LSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKPDAKIWGSLLSSCRTYSNLEI 436 (541)
Q Consensus 357 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 436 (541)
.......|++++|.+.|.....-..-++-.. + ..+.+ +...-..+. .-....+..+...+...|++++
T Consensus 18 g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~--------~-~~~~w--~~~~r~~l~-~~~~~a~~~la~~~~~~g~~~~ 85 (179)
T d2ff4a2 18 GVHAAAAGRFEQASRHLSAALREWRGPVLDD--------L-RDFQF--VEPFATALV-EDKVLAHTAKAEAEIACGRASA 85 (179)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG--------G-TTSTT--HHHHHHHHH-HHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCccccccc--------C-cchHH--HHHHHHHHH-HHHHHHHHHHHHHHHHCCCchH
Confidence 3456777888888888888876321111000 0 00000 000000000 0123567778888999999999
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048358 437 AVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 437 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 480 (541)
|+..++++++.+|.+...|..++.+|.+.|++++|++.|+++..
T Consensus 86 Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 86 VIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999854
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.89 E-value=5e-05 Score=59.80 Aligned_cols=88 Identities=15% Similarity=0.010 Sum_probs=58.9
Q ss_pred HHHHhcCCHHHHHHHHHhC----CCCC----------CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC---------
Q 048358 394 DLLGRAGRLDQALNIIEEM----PMKP----------DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPE--------- 450 (541)
Q Consensus 394 ~~~~~~g~~~~A~~~~~~~----~~~p----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------- 450 (541)
..+.+.|++++|+..|++. +..| ....|+.+..+|...|++++|...+++++++.|.
T Consensus 17 ~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~ 96 (156)
T d2hr2a1 17 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEG 96 (156)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccccccc
Confidence 3444556666666655554 1111 1356777777788888888888888887764321
Q ss_pred --CcchHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 451 --DTGNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 451 --~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
...+++.++.+|...|++++|...|++..+.
T Consensus 97 ~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 97 KLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1225777888999999999999988887653
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.89 E-value=0.0067 Score=53.43 Aligned_cols=251 Identities=9% Similarity=0.010 Sum_probs=117.8
Q ss_pred CCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHH
Q 048358 114 LPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGY 193 (541)
Q Consensus 114 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~ 193 (541)
.||..--..+..-|.+.|.++.|..++..+ .-|..++..+.+.+++..|.+.+.+. .+..+|..+...+
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~---------~d~~rl~~~~v~l~~~~~avd~~~k~--~~~~~~k~~~~~l 79 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFAC 79 (336)
T ss_dssp CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhC---------CCHHHHHHHHHhhccHHHHHHHHHHc--CCHHHHHHHHHHH
Confidence 445445555666666777777777766533 22455666677777777777766654 2445666666666
Q ss_pred HhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHH
Q 048358 194 ARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHM 273 (541)
Q Consensus 194 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 273 (541)
.+......|.-. ......++.....++..|-..|.+++...++....... .++...++.++..+++.+. ++ +.+
T Consensus 80 ~~~~e~~la~i~-~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~~-~k---l~e 153 (336)
T d1b89a_ 80 VDGKEFRLAQMC-GLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKP-QK---MRE 153 (336)
T ss_dssp HHTTCHHHHHHT-TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCH-HH---HHH
T ss_pred HhCcHHHHHHHH-HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhCh-HH---HHH
Confidence 666555544221 11112233344556666666677777666666654321 3444455555555555432 22 222
Q ss_pred HHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 048358 274 YCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITF 353 (541)
Q Consensus 274 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 353 (541)
.+.......+ ...++..|.+.+- |.-++-.|.+.|+++.|..+. .+. +++....
T Consensus 154 ~l~~~s~~y~---~~k~~~~c~~~~l------------------~~elv~Ly~~~~~~~~A~~~~---i~~--~~~~~~~ 207 (336)
T d1b89a_ 154 HLELFWSRVN---IPKVLRAAEQAHL------------------WAELVFLYDKYEEYDNAIITM---MNH--PTDAWKE 207 (336)
T ss_dssp HHHHHSTTSC---HHHHHHHHHTTTC------------------HHHHHHHHHHTTCHHHHHHHH---HHS--TTTTCCH
T ss_pred HHHhccccCC---HHHHHHHHHHcCC------------------hHHHHHHHHhcCCHHHHHHHH---HHc--chhhhhH
Confidence 2221111111 1112223333333 333444555666666665443 221 3344344
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 048358 354 IGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM 412 (541)
Q Consensus 354 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 412 (541)
...+..+.+.++.+...++....... .|+. .+.++......-+..+..+.+++-
T Consensus 208 ~~f~e~~~k~~N~e~~~~~i~~yL~~---~p~~--i~~lL~~v~~~~d~~r~V~~~~k~ 261 (336)
T d1b89a_ 208 GQFKDIITKVANVELYYRAIQFYLEF---KPLL--LNDLLMVLSPRLDHTRAVNYFSKV 261 (336)
T ss_dssp HHHHHHHHHCSSTHHHHHHHHHHHHH---CGGG--HHHHHHHHGGGCCHHHHHHHHHHT
T ss_pred HHHHHHHHccCChHHHHHHHHHHHHc---CHHH--HHHHHHHhccCCCHHHHHHHHHhc
Confidence 44555566666666555555554442 2332 355666666556666666655554
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.84 E-value=2.3e-05 Score=67.52 Aligned_cols=129 Identities=9% Similarity=-0.052 Sum_probs=87.1
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHH
Q 048358 325 LANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQ 404 (541)
Q Consensus 325 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 404 (541)
..+.|++++|+..+++.++.. |-|...+..+...++..|++++|.+.|+...+.. +.+...+..+...+...+..++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~--P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHhccccHH
Confidence 345788888888888888876 6677888888888888899999988888887742 3345555555555555554444
Q ss_pred HHHHHHhC--CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHH
Q 048358 405 ALNIIEEM--PMKPD-AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYV 456 (541)
Q Consensus 405 A~~~~~~~--~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 456 (541)
+..-.... ...|+ ...+......+...|+.++|.+.++++.+..|..+..++
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~ 137 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN 137 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcccc
Confidence 43332221 12232 233344445577888888888888888888887766544
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.83 E-value=5.2e-05 Score=53.74 Aligned_cols=73 Identities=16% Similarity=0.084 Sum_probs=57.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC----C----CCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHH
Q 048358 389 YGCLVDLLGRAGRLDQALNIIEEM----P----MKPD-AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLS 459 (541)
Q Consensus 389 ~~~l~~~~~~~g~~~~A~~~~~~~----~----~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 459 (541)
+-.+...+.+.|++++|+..|++. + ..++ ..++..+..++.+.|++++|+..++++++++|+++.++..+.
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~ 87 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 445677777888888887777765 1 1122 567888999999999999999999999999999999888876
Q ss_pred HH
Q 048358 460 NI 461 (541)
Q Consensus 460 ~~ 461 (541)
..
T Consensus 88 ~~ 89 (95)
T d1tjca_ 88 YF 89 (95)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.76 E-value=4.4e-06 Score=66.17 Aligned_cols=106 Identities=7% Similarity=-0.049 Sum_probs=78.6
Q ss_pred HHHHHHH--HHHhhcCCHHHHHHHHHHHhccCCCCc------------chHHHHHHHHHhcCCHHHHHHHHHHhhhCCCc
Q 048358 419 KIWGSLL--SSCRTYSNLEIAVIAMEHLLVLEPEDT------------GNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMK 484 (541)
Q Consensus 419 ~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 484 (541)
.+|..+. ..+...|++++|+..|++++++.|..+ ..|..++.+|.+.|++++|...+++.......
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~ 87 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 87 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence 4555553 446788999999999999998876543 46888999999999999999999987653110
Q ss_pred cCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCcccccccC
Q 048358 485 KTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMYEDI 539 (541)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~i 539 (541)
.... .....|....++..+|.+|..+|+.++|++.+.+++
T Consensus 88 ~~~~---------------~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 88 RGEL---------------NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HCCT---------------TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccc---------------cccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 001123445578899999999999999999988765
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.60 E-value=3.4e-05 Score=66.45 Aligned_cols=121 Identities=14% Similarity=0.106 Sum_probs=88.2
Q ss_pred HhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHH
Q 048358 360 CAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPD-AKIWGSLLSSCRTYSNLEIA 437 (541)
Q Consensus 360 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a 437 (541)
..+.|++++|+..+++..+. -|.+...+..++..|+..|++++|.+.|+.. ...|+ ...+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence 45679999999999999985 3778899999999999999999999999998 66675 45555555555444444443
Q ss_pred HHHHHHHhcc-CCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 048358 438 VIAMEHLLVL-EPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKS 482 (541)
Q Consensus 438 ~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 482 (541)
.......... .|++...+...+..+.+.|+.++|.+.++++.+..
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 3322221122 23344455666778889999999999999987654
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.46 E-value=0.0011 Score=52.90 Aligned_cols=72 Identities=14% Similarity=0.131 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhh----hcCCCCcHhH
Q 048358 316 VSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKR----DHHIEHKIEH 388 (541)
Q Consensus 316 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~ 388 (541)
..+..+...+...|++++|+..++++.... +-+...|..++.++...|+..+|++.|+.+.+ ..|+.|+..+
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 345666777777777777777777777665 55666777777777777777777777776633 2466666543
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=97.30 E-value=0.0085 Score=42.73 Aligned_cols=140 Identities=9% Similarity=0.003 Sum_probs=88.2
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHH
Q 048358 326 ANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQA 405 (541)
Q Consensus 326 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 405 (541)
.-.|..++..+++.+.... .+..-|+.++--....-+-+...++++.+-+-+.+. .+++....
T Consensus 13 ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls--------------~C~Nlk~v 75 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKSV 75 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHHH
T ss_pred HHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCch--------------hhhcHHHH
Confidence 3345555555555555542 234444544444444444445555555554432221 12222222
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCc
Q 048358 406 LNIIEEMPMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMK 484 (541)
Q Consensus 406 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 484 (541)
..-+-.+. .+...+...+..+..+|+-+.-..+++.+.+.+..+|+....++.+|.+.|...++-+++++.-++|+.
T Consensus 76 v~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 76 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 22222222 234455566777889999999999999988888888999999999999999999999999999998874
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.12 E-value=0.1 Score=48.17 Aligned_cols=262 Identities=11% Similarity=0.034 Sum_probs=116.4
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCChHHHHHHHHHHHccCChHHH
Q 048358 190 ISGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGI-EPDEISIVSVLPACAQLGSLELG 268 (541)
Q Consensus 190 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~~~~a 268 (541)
+..+.+.++++.....+..-+ .++..-...+.+....|+..+|...+..+-..|. .|+ .+
T Consensus 79 l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~------------------~c 139 (450)
T d1qsaa1 79 VNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPN------------------AC 139 (450)
T ss_dssp HHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCT------------------HH
T ss_pred HHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCch------------------HH
Confidence 445556666666555443321 2333333455666667777777776666554431 222 22
Q ss_pred HHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 048358 269 EWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPP 348 (541)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 348 (541)
..++..+.+.|. .+...+-.-+......|+...|..+...+...........+........... .. ... .+
T Consensus 140 ~~l~~~~~~~~~-lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~~~---~~---~~~--~~ 210 (450)
T d1qsaa1 140 DKLFSVWRASGK-QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLT---FA---RTT--GA 210 (450)
T ss_dssp HHHHHHHHHTTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHH---HH---HHS--CC
T ss_pred HHHHHHHHhcCC-CCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHhHHH---HH---hcC--CC
Confidence 223333333332 2223333344445555666666666666554433333444333322211111 11 111 12
Q ss_pred CHHHHHHHHHHHhc--cCcHHHHHHHHHHhhhhcCCCCcHhH--HHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHH
Q 048358 349 NDITFIGLLSACAH--TGFWNEGLMYFDSMKRDHHIEHKIEH--YGCLVDLLGRAGRLDQALNIIEEM-PMKPDAKIWGS 423 (541)
Q Consensus 349 ~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ 423 (541)
+......+..++.+ ..+.+.+...+..........++... ...+...+...+..+.+...+... ....+.....-
T Consensus 211 ~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w 290 (450)
T d1qsaa1 211 TDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIER 290 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHH
T ss_pred ChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHH
Confidence 22222222222221 23555566666655543322222110 111122222344455555555444 11223333333
Q ss_pred HHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048358 424 LLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIR 479 (541)
Q Consensus 424 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 479 (541)
.+......++...+...+..+-......+...+-+++++...|+.++|...+....
T Consensus 291 ~~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a 346 (450)
T d1qsaa1 291 RVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (450)
T ss_dssp HHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHh
Confidence 33334455666666666655433222234445556666666666666666666654
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.77 E-value=0.006 Score=44.17 Aligned_cols=65 Identities=8% Similarity=-0.037 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHHHhhcC---CHHHHHHHHHHHhccCCCCc-chHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048358 416 PDAKIWGSLLSSCRTYS---NLEIAVIAMEHLLVLEPEDT-GNYVLLSNIYAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 416 p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 480 (541)
|...+--....++.++. +.++++.+++++.+.+|.+. +.+..|+.+|.+.|++++|.+.++.+.+
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 33444444444444332 34566666666666665543 4666666666666667666666666654
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.59 E-value=0.096 Score=38.73 Aligned_cols=51 Identities=10% Similarity=-0.049 Sum_probs=35.6
Q ss_pred cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh----cCCHHHHHHHHHHhhhCCC
Q 048358 431 YSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAK----HGRWEDVSRMRKLIRSKSM 483 (541)
Q Consensus 431 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 483 (541)
..+.++|.+.|+++.+.+ ++.....|+.+|.+ ..+.++|.+++++..+.|.
T Consensus 72 ~~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 72 KKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred chhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 346777777777776643 45567777777776 3578888888888777664
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.09 E-value=0.25 Score=36.30 Aligned_cols=16 Identities=6% Similarity=0.169 Sum_probs=10.6
Q ss_pred ChHHHHHHHHHHHHCC
Q 048358 229 SYAEALDVFRQMQMVG 244 (541)
Q Consensus 229 ~~~~A~~~~~~m~~~~ 244 (541)
++++|+++|++..+.|
T Consensus 8 d~~~A~~~~~kaa~~g 23 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN 23 (133)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 4566777777766655
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.65 E-value=0.25 Score=35.39 Aligned_cols=73 Identities=11% Similarity=0.021 Sum_probs=48.5
Q ss_pred CcHhHHHHHHHHHHhcC---CHHHHHHHHHhC-CCCC-CH-HHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHH
Q 048358 384 HKIEHYGCLVDLLGRAG---RLDQALNIIEEM-PMKP-DA-KIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYV 456 (541)
Q Consensus 384 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p-~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 456 (541)
++..+--.+..++++.. +.++++.+|++. ...| +. ..+..|.-+|.+.|++++|...++++++++|.+..+..
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~ 111 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 111 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHH
Confidence 44455555566666543 345677777766 2234 32 45666777788888888888888888888888865443
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.65 E-value=0.46 Score=33.72 Aligned_cols=62 Identities=11% Similarity=0.078 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhh
Q 048358 317 SWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRD 379 (541)
Q Consensus 317 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 379 (541)
.++..++.+..+|+-++-.++++.+.+.+ .|++.....+..+|.+.|+..++-+++.+.-++
T Consensus 88 ~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~ 149 (161)
T d1wy6a1 88 HVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKK 149 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 44556677778888888888888877765 777788888888888888888888888877764
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=92.67 E-value=3.5 Score=37.30 Aligned_cols=370 Identities=9% Similarity=-0.062 Sum_probs=211.6
Q ss_pred HHHHHHHHHhccCCc-hhHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCC
Q 048358 31 KKIHTQILKYLLSQS-NFLVTKMIDVCNSGGDLAYASLLFKQVKEPNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRT 109 (541)
Q Consensus 31 ~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~ 109 (541)
.++...+.++.-.|- .......+..+.+.++++.....+...+ .+...-.....+....|+..+|...+...-..|
T Consensus 56 ~~i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~-- 132 (450)
T d1qsaa1 56 VTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-- 132 (450)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS--
T ss_pred HHHHHHHHHCCCChhHHHHHHHHHHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--
Confidence 344444444433331 2223344566777788877776664322 234444456677788888888888877776655
Q ss_pred CCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHH
Q 048358 110 GSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNL 189 (541)
Q Consensus 110 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 189 (541)
... ++....++..+.+.| ..+...+-.-+......|++..|..+...+...........
T Consensus 133 ----~~~----------------p~~c~~l~~~~~~~~-~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~ 191 (450)
T d1qsaa1 133 ----KSQ----------------PNACDKLFSVWRASG-KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAI 191 (450)
T ss_dssp ----SCC----------------CTHHHHHHHHHHHTT-CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHH
T ss_pred ----CCC----------------chHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHH
Confidence 222 223333444444444 33444444556667777889999988888766555555555
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHh--cCChHHHHHHHHHHHHCCCCCChHHHHHH----HHHHHccC
Q 048358 190 ISGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTH--IGSYAEALDVFRQMQMVGIEPDEISIVSV----LPACAQLG 263 (541)
Q Consensus 190 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~m~~~~~~p~~~~~~~l----l~~~~~~~ 263 (541)
+........+.. ...... .+......+..++.+ ..+.+.|..++....... ..+......+ .......+
T Consensus 192 ~~l~~~p~~~~~---~~~~~~-~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~ 266 (450)
T d1qsaa1 192 ISLANNPNTVLT---FARTTG-ATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGND 266 (450)
T ss_dssp HHHHHCGGGHHH---HHHHSC-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTT
T ss_pred HHHHhChHhHHH---HHhcCC-CChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcc-cccHHHHHHHHHHHHHHHHHcC
Confidence 555543333333 222222 222222223333332 357788888888876543 2222222222 22233456
Q ss_pred ChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCC---ChhHHHHHHHHHHhcCChHHHHHHHHH
Q 048358 264 SLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVER---DVVSWSTVIGGLANHGKAHKAIHLFHE 340 (541)
Q Consensus 264 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~ 340 (541)
..+.+...+......+. +.......+......+++..+...+..+... .....-=+..++...|+.++|..+|..
T Consensus 267 ~~~~a~~~~~~~~~~~~--~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~ 344 (450)
T d1qsaa1 267 VTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQ 344 (450)
T ss_dssp CCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred chHHHHHHHHhhccccc--chHHHHHHHHHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHH
Confidence 67777777776665543 3334444555667789999999999998653 222333456788899999999999998
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCC--CcH----hHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 048358 341 MQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIE--HKI----EHYGCLVDLLGRAGRLDQALNIIEEMPM 414 (541)
Q Consensus 341 m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 414 (541)
... .++ |..++.+-.-...+. +.. ...+ +.. ..-..-+..+...|+...|...+..+.-
T Consensus 345 ~a~---~~~---fYG~LAa~~Lg~~~~--------~~~-~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~ 409 (450)
T d1qsaa1 345 LMQ---QRG---FYPMVAAQRIGEEYE--------LKI-DKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVK 409 (450)
T ss_dssp HHT---SCS---HHHHHHHHHTTCCCC--------CCC-CCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred Hhc---CCC---hHHHHHHHHcCCCCC--------CCc-CCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHh
Confidence 864 233 433333211111110 000 0000 000 0011235667788999999998877732
Q ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 048358 415 KPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLV 446 (541)
Q Consensus 415 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 446 (541)
..+......+.....+.|.++.|+....++..
T Consensus 410 ~~~~~~~~~la~lA~~~g~~~~aI~a~~~~~~ 441 (450)
T d1qsaa1 410 SKSKTEQAQLARYAFNNQWWDLSVQATIAGKL 441 (450)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHc
Confidence 34566666777778899999999988877643
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.10 E-value=1.4 Score=29.55 Aligned_cols=63 Identities=13% Similarity=0.179 Sum_probs=49.9
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHH
Q 048358 330 KAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVD 394 (541)
Q Consensus 330 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 394 (541)
+.-++.+-+..+....+.|++......+++|.+.+++..|.++|+.++.+.+ ++...|..++.
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~--~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CcHHHHHHHHH
Confidence 4556677777788888899999999999999999999999999999987543 34556666554
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=82.12 E-value=5.3 Score=26.65 Aligned_cols=59 Identities=17% Similarity=0.211 Sum_probs=40.7
Q ss_pred CHHHHHHHHHhC---CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHH
Q 048358 401 RLDQALNIIEEM---PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLS 459 (541)
Q Consensus 401 ~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 459 (541)
+.-++.+-++.+ ..-|++......+.+|.+.+++..|.++++.....-.++...|..++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yil 82 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 82 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 333444444444 45688888888999999999999999999887754433455565544
|