Citrus Sinensis ID: 048360

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTMWMVMELKGSCKIRYHSNGPENEPIEIDFMPPFRKLDMIAEMERPANICMPKIFLLMLLPKLSTDHMSPLAKGHRSKPGLTLRLELFVNKREDQQMGDSEAMVIDGSFCTAHAKKQTISYFATLIDGVSFVTETKERHLVYARAHRGYACWLHK
cccEEEcccccHHHHHHHcccccEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccEEEEcccccccccHHHHHHHHcccccccccccccccEEEccccccccccccccccccHHHHHHcccHHHHHccccccccccHHHHHHHccccccccccHHHHHHHHHccccccEEEEEcccccccccccc
ccEEEEEHHHHHHHHHHHccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHccccEEEcccEEEEcccccHHccHHHHHHHHHcccHHHHHHHcccccEEEccccHcccccccccccccHEEEEEEcHHHHHccccHHHHccHHHHHHHHHHHHHHHHHHHHccccEEcccHHHHHHHHHHHccHHHHHcc
melymrvspelnlkrsiaGGFRRLCEIGkcyrnegmdlthlpeLTMWMVMELKGSckiryhsngpenepieidfmppfrklDMIAEMerpanicmpKIFLLMLlpklstdhmsplakghrskpgltLRLELFVNkredqqmgdseamvidgsfctahAKKQTISYFATLIDGVSFVTETKERHLVYARAHRGYACWLHK
melymrvspelnlkrsiaggFRRLCEIGKCYRNEGMDLTHLPELTMWMVMELKGSCKIRYHSNGPENEPIEIDFMPPFRKLDMIAEMERPANICMPKIFLLMLLPKLSTDHMSPlakghrskpglTLRLELFVNKREDQQMGDSEAMVIDGSFCTAHAKKQTISYFATLIDGVSFVTETKERHLVYARAHRGYACWLHK
MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTMWMVMELKGSCKIRYHSNGPENEPIEIDFMPPFRKLDMIAEMERPANICMPKIFLLMLLPKLSTDHMSPLAKGHRSKPGLTLRLELFVNKREDQQMGDSEAMVIDGSFCTAHAKKQTISYFATLIDGVSFVTETKERHLVYARAHRGYACWLHK
**********LNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTMWMVMELKGSCKIRYHSNG**NEPIEIDFMPPFRKLDMIAEMERPANICMPKIFLLMLLPKLS****************LTLRLELFV************AMVIDGSFCTAHAKKQTISYFATLIDGVSFVTETKERHLVYARAHRGYACWL**
MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTMWMVMELKGSCKIRYHSNGPENEPIEIDFMPPFRKLDMIAEMERPANICMPKIFLLMLLPKLSTDHMSPLAKGHRSKPGLTLRLELFVNKREDQQMGDSEAMVIDGSFCTAHAKKQTISYFATLIDGVSFVTETKERHLVYARAHRGYAC*L**
MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTMWMVMELKGSCKIRYHSNGPENEPIEIDFMPPFRKLDMIAEMERPANICMPKIFLLMLLPKLSTDHM**********PGLTLRLELFVNKREDQQMGDSEAMVIDGSFCTAHAKKQTISYFATLIDGVSFVTETKERHLVYARAHRGYACWLHK
MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTMWMVMELKGSCKIRYHSNGPENEPIEIDFMPPFRKLDMIAEMERPANICMPKIFLLMLLPKLSTDHMSPLAKGHRSKPGLTLRLELFVNKREDQQMGDSEAMVIDGSFCTAHAKKQTISYFATLIDGVSFVTETKERHLVYARAHRGYACWLHK
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTMWMVMELKGSCKIRYHSNGPENEPIEIDFMPPFRKLDMIAEMERPANICMPKIFLLMLLPKLSTDHMSPLAKGHRSKPGLTLRLELFVNKREDQQMGDSEAMVIDGSFCTAHAKKQTISYFATLIDGVSFVTETKERHLVYARAHRGYACWLHK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query199 2.2.26 [Sep-21-2011]
Q43776588 Lysine--tRNA ligase OS=So N/A no 0.778 0.263 0.400 2e-37
Q6F2U9602 Lysine--tRNA ligase OS=Or yes no 0.783 0.259 0.399 2e-34
Q9ZPI1626 Lysine--tRNA ligase OS=Ar yes no 0.783 0.249 0.374 5e-33
P37879597 Lysine--tRNA ligase OS=Cr yes no 0.783 0.261 0.346 1e-28
Q99MN1595 Lysine--tRNA ligase OS=Mu yes no 0.783 0.262 0.338 3e-28
Q15046597 Lysine--tRNA ligase OS=Ho yes no 0.783 0.261 0.330 2e-27
Q22099572 Lysine--tRNA ligase OS=Ca yes no 0.783 0.272 0.329 7e-25
Q9UUE6591 Lysine--tRNA ligase, cyto yes no 0.783 0.263 0.326 4e-22
Q8SS56440 Probable lysine--tRNA lig yes no 0.783 0.354 0.317 2e-19
C4V8R9514 Probable lysine--tRNA lig N/A no 0.778 0.301 0.319 3e-19
>sp|Q43776|SYK_SOLLC Lysine--tRNA ligase OS=Solanum lycopersicum GN=LYSRS PE=2 SV=1 Back     alignment and function desciption
 Score =  155 bits (391), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 97/242 (40%), Positives = 121/242 (50%), Gaps = 87/242 (35%)

Query: 2   ELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM--------------- 46
           EL +RVSPEL LK+ + GGF R+ E+GK +RNEGMDLTH PE TM               
Sbjct: 307 ELLIRVSPELYLKKLVVGGFDRVYELGKHFRNEGMDLTHSPEFTMCELYMAYADYNDLMD 366

Query: 47  -------WMVMELKGSCKIRYHSNGPENEPIEIDFMPPFRKLDMIAEMERPANICMPK-- 97
                   MV +L GS KIRYH+NG +NEPIEIDF PPFRK+DM++E+E+ ANI +P+  
Sbjct: 367 LTEQLLSGMVKDLTGSYKIRYHANGLDNEPIEIDFTPPFRKIDMLSELEKVANISIPRDL 426

Query: 98  -------------------------------------IFLLMLLPKLSTDH---MSPLAK 117
                                                I +  + P    +H   MSPLAK
Sbjct: 427 SSESANKHLVDVCEKFDVKCPPPHTTTRLLDKLVGHFIEVNCINPTFIINHPEIMSPLAK 486

Query: 118 GHRSKPGLTLRLELFVNKRE-----------------------DQQMGDSEAMVIDGSFC 154
             RS+PGLT R  LFVN+RE                       D+Q+GD EAM +D SF 
Sbjct: 487 SRRSEPGLTERFNLFVNRRELCDAYTELNDPTAQRERFAEQLKDRQLGDDEAMDLDESFI 546

Query: 155 TA 156
           TA
Sbjct: 547 TA 548

Solanum lycopersicum (taxid: 4081)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 6
>sp|Q6F2U9|SYK_ORYSJ Lysine--tRNA ligase OS=Oryza sativa subsp. japonica GN=Os03g0586800 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZPI1|SYK_ARATH Lysine--tRNA ligase OS=Arabidopsis thaliana GN=At3g11710 PE=2 SV=1 Back     alignment and function description
>sp|P37879|SYK_CRIGR Lysine--tRNA ligase OS=Cricetulus griseus GN=KARS PE=1 SV=1 Back     alignment and function description
>sp|Q99MN1|SYK_MOUSE Lysine--tRNA ligase OS=Mus musculus GN=Kars PE=1 SV=1 Back     alignment and function description
>sp|Q15046|SYK_HUMAN Lysine--tRNA ligase OS=Homo sapiens GN=KARS PE=1 SV=3 Back     alignment and function description
>sp|Q22099|SYK_CAEEL Lysine--tRNA ligase OS=Caenorhabditis elegans GN=krs-1 PE=2 SV=1 Back     alignment and function description
>sp|Q9UUE6|SYKC_SCHPO Lysine--tRNA ligase, cytoplasmic OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=krs1 PE=3 SV=1 Back     alignment and function description
>sp|Q8SS56|SYKC_ENCCU Probable lysine--tRNA ligase, cytoplasmic OS=Encephalitozoon cuniculi (strain GB-M1) GN=ECU04_0580 PE=3 SV=1 Back     alignment and function description
>sp|C4V8R9|SYKC_NOSCE Probable lysine--tRNA ligase, cytoplasmic OS=Nosema ceranae (strain BRL01) GN=NCER_100909 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query199
350537233 588 lysine--tRNA ligase [Solanum lycopersicu 0.778 0.263 0.400 1e-35
224106978 593 predicted protein [Populus trichocarpa] 0.783 0.263 0.399 4e-34
449461221 692 PREDICTED: LOW QUALITY PROTEIN: lysine-- 0.783 0.225 0.386 6e-34
224143682 549 predicted protein [Populus trichocarpa] 0.783 0.284 0.399 8e-34
224126015 603 predicted protein [Populus trichocarpa] 0.783 0.258 0.395 1e-33
449527840 363 PREDICTED: lysine--tRNA ligase-like, par 0.783 0.429 0.386 2e-33
108709561 595 Lysyl-tRNA synthetase, putative, express 0.783 0.262 0.402 3e-33
255580096 607 lysyl-tRNA synthetase, putative [Ricinus 0.783 0.257 0.390 8e-33
125586971 630 hypothetical protein OsJ_11579 [Oryza sa 0.783 0.247 0.399 9e-33
115453943 602 Os03g0586800 [Oryza sativa Japonica Grou 0.783 0.259 0.399 1e-32
>gi|350537233|ref|NP_001234285.1| lysine--tRNA ligase [Solanum lycopersicum] gi|2501025|sp|Q43776.1|SYK_SOLLC RecName: Full=Lysine--tRNA ligase; AltName: Full=Lysyl-tRNA synthetase; Short=LysRS gi|1147585|emb|CAA64223.1| Lysyl-tRNA synthetase [Solanum lycopersicum] Back     alignment and taxonomy information
 Score =  155 bits (391), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 97/242 (40%), Positives = 121/242 (50%), Gaps = 87/242 (35%)

Query: 2   ELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM--------------- 46
           EL +RVSPEL LK+ + GGF R+ E+GK +RNEGMDLTH PE TM               
Sbjct: 307 ELLIRVSPELYLKKLVVGGFDRVYELGKHFRNEGMDLTHSPEFTMCELYMAYADYNDLMD 366

Query: 47  -------WMVMELKGSCKIRYHSNGPENEPIEIDFMPPFRKLDMIAEMERPANICMPK-- 97
                   MV +L GS KIRYH+NG +NEPIEIDF PPFRK+DM++E+E+ ANI +P+  
Sbjct: 367 LTEQLLSGMVKDLTGSYKIRYHANGLDNEPIEIDFTPPFRKIDMLSELEKVANISIPRDL 426

Query: 98  -------------------------------------IFLLMLLPKLSTDH---MSPLAK 117
                                                I +  + P    +H   MSPLAK
Sbjct: 427 SSESANKHLVDVCEKFDVKCPPPHTTTRLLDKLVGHFIEVNCINPTFIINHPEIMSPLAK 486

Query: 118 GHRSKPGLTLRLELFVNKRE-----------------------DQQMGDSEAMVIDGSFC 154
             RS+PGLT R  LFVN+RE                       D+Q+GD EAM +D SF 
Sbjct: 487 SRRSEPGLTERFNLFVNRRELCDAYTELNDPTAQRERFAEQLKDRQLGDDEAMDLDESFI 546

Query: 155 TA 156
           TA
Sbjct: 547 TA 548

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224106978|ref|XP_002333583.1| predicted protein [Populus trichocarpa] gi|222837523|gb|EEE75888.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449461221|ref|XP_004148340.1| PREDICTED: LOW QUALITY PROTEIN: lysine--tRNA ligase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224143682|ref|XP_002325039.1| predicted protein [Populus trichocarpa] gi|222866473|gb|EEF03604.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224126015|ref|XP_002329640.1| predicted protein [Populus trichocarpa] gi|222870521|gb|EEF07652.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449527840|ref|XP_004170917.1| PREDICTED: lysine--tRNA ligase-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|108709561|gb|ABF97356.1| Lysyl-tRNA synthetase, putative, expressed [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|255580096|ref|XP_002530880.1| lysyl-tRNA synthetase, putative [Ricinus communis] gi|223529533|gb|EEF31486.1| lysyl-tRNA synthetase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|125586971|gb|EAZ27635.1| hypothetical protein OsJ_11579 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|115453943|ref|NP_001050572.1| Os03g0586800 [Oryza sativa Japonica Group] gi|55583785|sp|Q6F2U9.1|SYK_ORYSJ RecName: Full=Lysine--tRNA ligase; AltName: Full=Lysyl-tRNA synthetase; Short=LysRS gi|50399950|gb|AAT76338.1| putative Lysyl-tRNA synthetase [Oryza sativa Japonica Group] gi|108709560|gb|ABF97355.1| Lysyl-tRNA synthetase, putative, expressed [Oryza sativa Japonica Group] gi|113549043|dbj|BAF12486.1| Os03g0586800 [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query199
TAIR|locus:2098348626 ATKRS-1 "lysyl-tRNA synthetase 0.361 0.115 0.432 1.2e-15
UNIPROTKB|E2RSP4625 KARS "Lysine--tRNA ligase" [Ca 0.371 0.118 0.397 3.6e-17
SGD|S000002444591 KRS1 "Lysyl-tRNA synthetase" [ 0.226 0.076 0.555 5.1e-16
MGI|MGI:1934754595 Kars "lysyl-tRNA synthetase" [ 0.376 0.126 0.376 5.7e-16
UNIPROTKB|F1MMK8623 KARS "Lysine--tRNA ligase" [Bo 0.361 0.115 0.391 6.5e-16
UNIPROTKB|F1S458625 KARS "Lysine--tRNA ligase" [Su 0.356 0.113 0.397 6.5e-16
UNIPROTKB|D4ABR8597 Kars "Lysine--tRNA ligase" [Ra 0.376 0.125 0.389 1.9e-15
RGD|1359653626 Kars "lysyl-tRNA synthetase" [ 0.376 0.119 0.389 2.2e-15
UNIPROTKB|Q15046597 KARS "Lysine--tRNA ligase" [Ho 0.361 0.120 0.351 2.1e-14
UNIPROTKB|G4N3I0 615 MGG_04966 "Lysine--tRNA ligase 0.226 0.073 0.533 2.2e-14
TAIR|locus:2098348 ATKRS-1 "lysyl-tRNA synthetase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 160 (61.4 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
 Identities = 32/74 (43%), Positives = 49/74 (66%)

Query:    25 CEIGKCYRNEGMDLTHLPELTM-WMVMELKGSCKIRYHSNGPENEPIEIDFMPPFRKLDM 83
             CE    + +   DL  + E+ +  MV EL G  KI+Y++NG + +PIEIDF PPFR+++M
Sbjct:   374 CEFYMAFADYN-DLMEMTEVMLSGMVKELTGGYKIKYNANGYDKDPIEIDFTPPFRRIEM 432

Query:    84 IAEMERPANICMPK 97
             I E+E+ A + +PK
Sbjct:   433 IGELEKVAKLNIPK 446
GO:0000166 "nucleotide binding" evidence=IEA
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA
GO:0004824 "lysine-tRNA ligase activity" evidence=IEA;ISS;IDA
GO:0005524 "ATP binding" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM;IEA
GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA
GO:0006430 "lysyl-tRNA aminoacylation" evidence=IEA;ISS
GO:0005829 "cytosol" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0009165 "nucleotide biosynthetic process" evidence=RCA
GO:0009640 "photomorphogenesis" evidence=RCA
GO:0010388 "cullin deneddylation" evidence=RCA
UNIPROTKB|E2RSP4 KARS "Lysine--tRNA ligase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
SGD|S000002444 KRS1 "Lysyl-tRNA synthetase" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
MGI|MGI:1934754 Kars "lysyl-tRNA synthetase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1MMK8 KARS "Lysine--tRNA ligase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1S458 KARS "Lysine--tRNA ligase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|D4ABR8 Kars "Lysine--tRNA ligase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|1359653 Kars "lysyl-tRNA synthetase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q15046 KARS "Lysine--tRNA ligase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|G4N3I0 MGG_04966 "Lysine--tRNA ligase" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_6580001
lysine-tRNA ligase (EC-6.1.1.6) (594 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.XI.1444.1
aminoacyl-tRNA ligase (EC-6.1.1.4) (889 aa)
      • 0.610
estExt_Genewise1_v1.C_LG_II3255
arginine-tRNA ligase (EC-6.1.1.19) (590 aa)
   • •• 0.541
eugene3.00031274
aminoacyl-tRNA ligase (EC-6.1.1.2) (404 aa)
•     • 0.519
eugene3.55420001
annotation not avaliable (132 aa)
•       0.466
fgenesh4_pm.C_LG_IX000007
hypothetical protein (574 aa)
•     • 0.455
eugene3.114390001
Predicted protein (351 aa)
      • 0.448
gw1.VIII.2106.1
threonine-tRNA ligase (EC-6.1.1.3) (669 aa)
   •  • 0.410
gw1.X.6174.1
annotation not avaliable (674 aa)
   •  • 0.400

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query199
PLN02502553 PLN02502, PLN02502, lysyl-tRNA synthetase 1e-44
cd00775329 cd00775, LysRS_core, Lys_tRNA synthetase (LysRS) c 4e-40
PRK00484491 PRK00484, lysS, lysyl-tRNA synthetase; Reviewed 2e-35
COG1190502 COG1190, LysU, Lysyl-tRNA synthetase (class II) [T 9e-33
PTZ00417585 PTZ00417, PTZ00417, lysine-tRNA ligase; Provisiona 7e-32
TIGR00499496 TIGR00499, lysS_bact, lysyl-tRNA synthetase, eukar 2e-26
PTZ00385659 PTZ00385, PTZ00385, lysyl-tRNA synthetase; Provisi 2e-21
cd00669269 cd00669, Asp_Lys_Asn_RS_core, Asp_Lys_Asn_tRNA syn 1e-17
PRK029831094 PRK02983, lysS, lysyl-tRNA synthetase; Provisional 1e-12
PRK12445505 PRK12445, PRK12445, lysyl-tRNA synthetase; Reviewe 1e-11
pfam00152345 pfam00152, tRNA-synt_2, tRNA synthetases class II 3e-10
COG2269322 COG2269, COG2269, Truncated, possibly inactive, ly 5e-08
TIGR00462290 TIGR00462, genX, EF-P lysine aminoacylase GenX 3e-06
PRK09350306 PRK09350, PRK09350, poxB regulator PoxA; Provision 6e-05
PRK029831094 PRK02983, lysS, lysyl-tRNA synthetase; Provisional 0.004
>gnl|CDD|215278 PLN02502, PLN02502, lysyl-tRNA synthetase Back     alignment and domain information 
 Score =  155 bits (393), Expect = 1e-44
 Identities = 83/243 (34%), Positives = 103/243 (42%), Gaps = 94/243 (38%)

Query: 1   MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELT---MW---------- 47
           M+LY+R++ EL+LKR + GGF R+ EIG+ +RNEG+   H PE T    +          
Sbjct: 277 MDLYLRIATELHLKRLVVGGFERVYEIGRQFRNEGISTRHNPEFTTCEFYQAYADYNDMM 336

Query: 48  ---------MVMELKGSCKIRYHSNGPENEPIEIDFMPPFRKLDMIAEMERPANICMPKI 98
                    MV EL GS KI+YH        IEIDF PPFR++ MI+ +E    I  P  
Sbjct: 337 ELTEEMVSGMVKELTGSYKIKYH-------GIEIDFTPPFRRISMISLVEEATGIDFPAD 389

Query: 99  --------FLLMLLPKLS-------------------------------TDH---MSPLA 116
                   +L+    K                                  DH   MSPLA
Sbjct: 390 LKSDEANAYLIAACEKFDVKCPPPQTTGRLLNELFEEFLEETLVQPTFVLDHPVEMSPLA 449

Query: 117 KGHRSKPGLTLRLELFVNKRE-----------------------DQQMGDSEAMVIDGSF 153
           K HRSKPGLT R ELF+N RE                           GD EAM +D  F
Sbjct: 450 KPHRSKPGLTERFELFINGRELANAFSELTDPVDQRERFEEQVKQHNAGDDEAMALDEDF 509

Query: 154 CTA 156
           CTA
Sbjct: 510 CTA 512

Length = 553
>gnl|CDD|238398 cd00775, LysRS_core, Lys_tRNA synthetase (LysRS) class II core domain Back     alignment and domain information
>gnl|CDD|234778 PRK00484, lysS, lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|224111 COG1190, LysU, Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|173607 PTZ00417, PTZ00417, lysine-tRNA ligase; Provisional Back     alignment and domain information
>gnl|CDD|232998 TIGR00499, lysS_bact, lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial Back     alignment and domain information
>gnl|CDD|185588 PTZ00385, PTZ00385, lysyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|238358 cd00669, Asp_Lys_Asn_RS_core, Asp_Lys_Asn_tRNA synthetase class II core domain Back     alignment and domain information
>gnl|CDD|235095 PRK02983, lysS, lysyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|171504 PRK12445, PRK12445, lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|215753 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, K and N) Back     alignment and domain information
>gnl|CDD|225178 COG2269, COG2269, Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|232984 TIGR00462, genX, EF-P lysine aminoacylase GenX Back     alignment and domain information
>gnl|CDD|236474 PRK09350, PRK09350, poxB regulator PoxA; Provisional Back     alignment and domain information
>gnl|CDD|235095 PRK02983, lysS, lysyl-tRNA synthetase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 199
COG1190502 LysU Lysyl-tRNA synthetase (class II) [Translation 100.0
TIGR00499496 lysS_bact lysyl-tRNA synthetase, eukaryotic and no 100.0
PRK12445505 lysyl-tRNA synthetase; Reviewed 100.0
TIGR00462304 genX lysyl-tRNA synthetase-like protein GenX. Many 100.0
PLN02502553 lysyl-tRNA synthetase 100.0
PRK00484491 lysS lysyl-tRNA synthetase; Reviewed 100.0
KOG1885560 consensus Lysyl-tRNA synthetase (class II) [Transl 100.0
PTZ00417585 lysine-tRNA ligase; Provisional 100.0
PTZ00385659 lysyl-tRNA synthetase; Provisional 100.0
cd00775329 LysRS_core Lys_tRNA synthetase (LysRS) class II co 100.0
PRK029831094 lysS lysyl-tRNA synthetase; Provisional 100.0
TIGR00458428 aspS_arch aspartyl-tRNA synthetase, archaeal type. 100.0
PRK06462335 asparagine synthetase A; Reviewed 100.0
PRK05159437 aspC aspartyl-tRNA synthetase; Provisional 100.0
cd00776322 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class 100.0
PLN02532633 asparagine-tRNA synthetase 100.0
COG0017435 AsnS Aspartyl/asparaginyl-tRNA synthetases [Transl 100.0
PLN02850530 aspartate-tRNA ligase 100.0
PRK09350306 poxB regulator PoxA; Provisional 100.0
PF00152335 tRNA-synt_2: tRNA synthetases class II (D, K and N 100.0
PLN02221572 asparaginyl-tRNA synthetase 100.0
cd00669269 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase cl 100.0
PTZ00401550 aspartyl-tRNA synthetase; Provisional 100.0
TIGR00457453 asnS asparaginyl-tRNA synthetase. In a multiple se 100.0
PTZ00425586 asparagine-tRNA ligase; Provisional 100.0
PRK03932450 asnC asparaginyl-tRNA synthetase; Validated 100.0
KOG0556533 consensus Aspartyl-tRNA synthetase [Translation, r 100.0
PLN02603565 asparaginyl-tRNA synthetase 100.0
COG2269322 Truncated, possibly inactive, lysyl-tRNA synthetas 100.0
cd00777280 AspRS_core Asp tRNA synthetase (aspRS) class II co 100.0
TIGR00459583 aspS_bact aspartyl-tRNA synthetase, bacterial type 100.0
KOG0554446 consensus Asparaginyl-tRNA synthetase (mitochondri 100.0
PLN02903 652 aminoacyl-tRNA ligase 100.0
PRK00476 588 aspS aspartyl-tRNA synthetase; Validated 100.0
PRK12820 706 bifunctional aspartyl-tRNA synthetase/aspartyl/glu 100.0
COG0173 585 AspS Aspartyl-tRNA synthetase [Translation, riboso 100.0
KOG0555545 consensus Asparaginyl-tRNA synthetase [Translation 99.97
KOG2411 628 consensus Aspartyl-tRNA synthetase, mitochondrial 99.96
cd00645309 AsnA Asparagine synthetase (aspartate-ammonia liga 97.98
PRK05425327 asparagine synthetase AsnA; Provisional 97.86
TIGR00669330 asnA aspartate--ammonia ligase, AsnA-type. The fac 97.82
PTZ00213348 asparagine synthetase A; Provisional 97.74
TIGR00470 533 sepS O-phosphoseryl-tRNA(Cys) synthetase. This fam 97.28
cd00768211 class_II_aaRS-like_core Class II tRNA amino-acyl s 97.06
PRK09537417 pylS pyrolysyl-tRNA synthetase; Reviewed 96.32
PF01409247 tRNA-synt_2d: tRNA synthetases class II core domai 95.96
TIGR02367453 PylS pyrrolysyl-tRNA synthetase. PylS is the archa 95.67
PTZ00326494 phenylalanyl-tRNA synthetase alpha chain; Provisio 95.45
PLN02853492 Probable phenylalanyl-tRNA synthetase alpha chain 95.43
PRK00488339 pheS phenylalanyl-tRNA synthetase subunit alpha; V 95.25
cd00496218 PheRS_alpha_core Phenylalanyl-tRNA synthetase (Phe 95.12
TIGR00468294 pheS phenylalanyl-tRNA synthetase, alpha subunit. 94.66
KOG2784483 consensus Phenylalanyl-tRNA synthetase, beta subun 94.35
PRK04172489 pheS phenylalanyl-tRNA synthetase subunit alpha; P 94.07
COG0016335 PheS Phenylalanyl-tRNA synthetase alpha subunit [T 94.03
PLN02788402 phenylalanine-tRNA synthetase 91.89
PF00587173 tRNA-synt_2b: tRNA synthetase class II core domain 91.3
PF01409247 tRNA-synt_2d: tRNA synthetases class II core domai 91.14
cd00768211 class_II_aaRS-like_core Class II tRNA amino-acyl s 88.61
PLN02853492 Probable phenylalanyl-tRNA synthetase alpha chain 87.96
COG0124 429 HisS Histidyl-tRNA synthetase [Translation, riboso 87.68
cd00774254 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-lik 87.47
COG0016335 PheS Phenylalanyl-tRNA synthetase alpha subunit [T 86.77
PRK00488339 pheS phenylalanyl-tRNA synthetase subunit alpha; V 86.6
PRK00037 412 hisS histidyl-tRNA synthetase; Reviewed 86.13
cd00773261 HisRS-like_core Class II Histidinyl-tRNA synthetas 85.76
cd00670235 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_t 84.94
TIGR00442 397 hisS histidyl-tRNA synthetase. This model finds a 84.63
PTZ00326494 phenylalanyl-tRNA synthetase alpha chain; Provisio 82.1
TIGR02367453 PylS pyrrolysyl-tRNA synthetase. PylS is the archa 80.89
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=1.2e-55  Score=397.87  Aligned_cols=190  Identities=38%  Similarity=0.597  Sum_probs=154.8

Q ss_pred             CceeeecCchHHHHHHHhcCCCceEEeccccccCCCCCCCchHHHH--------------HHHHHHHHhhHHHhcCCC-C
Q 048360            1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM--------------WMVMELKGSCKIRYHSNG-P   65 (199)
Q Consensus         1 ~~~yL~~SPql~lk~ll~~g~~rVfeIg~~FRaE~~~~rHl~EFtm--------------~l~~~i~~~~~~~~~~~~-~   65 (199)
                      +++|||+|||||||+|++||++||||||++||||+.+.+|||||||              ++.++++..+.....+.. .
T Consensus       228 ~dlyLRIApELyLKRliVGG~erVfEIgr~FRNEGid~tHNPEFTmlE~Y~AYaDy~D~m~ltE~Li~~~a~~v~gt~~v  307 (502)
T COG1190         228 MDLYLRIAPELYLKRLIVGGFERVFEIGRNFRNEGIDTTHNPEFTMLEFYQAYADYEDLMDLTEELIKELAKEVNGTTKV  307 (502)
T ss_pred             CceEEeeccHHHHHHHHhcCchhheeeccccccCCCccccCcchhhHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCeEE
Confidence            5799999999999999999999999999999999999999999999              222233322222211100 0


Q ss_pred             CCCCccccCCCCceeeeHHHHHHhhcCCC---CCH-H---------------H----Hhc-------------cc-chhh
Q 048360           66 ENEPIEIDFMPPFRKLDMIAEMERPANIC---MPK-I---------------F----LLM-------------LL-PKLS  108 (199)
Q Consensus        66 ~~~~~~~~~~~p~~rity~ea~~~~~G~~---~~~-~---------------~----L~~-------------li-p~fv  108 (199)
                      .-...++++++||+|+|+.||+++++|++   ..+ +               .    ++.             ++ ||||
T Consensus       308 ~y~~~~id~~~pf~ri~m~dal~e~~g~~~~~~~~~e~~~~~ak~~~i~~~~~~~~~~g~ll~~lFe~~vE~~liqPTFv  387 (502)
T COG1190         308 TYGGQEIDFSKPFKRITMVDALKEYLGVDFDDLFDDEEAKELAKKHGIEVEKYGTWGLGHLLNELFEELVEAKLIQPTFV  387 (502)
T ss_pred             EECCEeEecCCCeeeeehHHHHHHHhCccccccCCHHHHHHHHHHhCCCcCccccccHHHHHHHHHHHHhhhhhcCCcee
Confidence            11235689999999999999999999974   111 1               0    111             22 9999


Q ss_pred             ccc---CCCcccccCCCCceeEEEEEeecchh-----------------------hhhcCCccccCCcHHHHHHHhcCCC
Q 048360          109 TDH---MSPLAKGHRSKPGLTLRLELFVNKRE-----------------------DQQMGDSEAMVIDGSFCTAHAKKQT  162 (199)
Q Consensus       109 ~dy---~~plak~~~~~p~~~~rFel~i~G~E-----------------------~~~~g~~~~~~~d~~yl~a~~~G~p  162 (199)
                      +||   +|||||.++++|++|+||||||+|.|                       .++.|+++++.+|++||+|++||||
T Consensus       388 ~d~P~eiSPLak~~~~~p~~teRFElfi~g~EiaNaysELNDP~dQ~~RF~~Q~~~k~~Gddea~~~Dedfv~ALeyGmP  467 (502)
T COG1190         388 TDHPVEISPLAKRHRSNPGLTERFELFIGGKEIANAYSELNDPVDQRERFEAQVEEKEAGDDEAMELDEDFVEALEYGMP  467 (502)
T ss_pred             ecCccccCccccCCCCCcchhhhheeeeccEEeeeccchhcCHHHHHHHHHHHHHHHHcCCccccccCHHHHHHHhcCCC
Confidence            999   99999999999999999999999999                       3567888899999999999999999


Q ss_pred             CC-cceecHHHHH-HHhCCCccceeeecCC
Q 048360          163 IS-YFATLIDGVS-FVTETKERHLVYARAH  190 (199)
Q Consensus       163 Ph-G~giGleRl~-~l~g~~~i~~v~~~~~  190 (199)
                      |+ |+|||||||+ .|||+++||+|+++-.
T Consensus       468 PTgG~GiGIDRLvMllT~~~sIRdVilFP~  497 (502)
T COG1190         468 PTGGLGIGIDRLVMLLTNSPSIRDVILFPA  497 (502)
T ss_pred             CCCCccccHHHHHHHHcCCCchhheecccc
Confidence            99 9999999976 8899999999988643

>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial Back     alignment and domain information
>PRK12445 lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX Back     alignment and domain information
>PLN02502 lysyl-tRNA synthetase Back     alignment and domain information
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>KOG1885 consensus Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PTZ00417 lysine-tRNA ligase; Provisional Back     alignment and domain information
>PTZ00385 lysyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain Back     alignment and domain information
>PRK02983 lysS lysyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type Back     alignment and domain information
>PRK06462 asparagine synthetase A; Reviewed Back     alignment and domain information
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain Back     alignment and domain information
>PLN02532 asparagine-tRNA synthetase Back     alignment and domain information
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02850 aspartate-tRNA ligase Back     alignment and domain information
>PRK09350 poxB regulator PoxA; Provisional Back     alignment and domain information
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PLN02221 asparaginyl-tRNA synthetase Back     alignment and domain information
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain Back     alignment and domain information
>PTZ00401 aspartyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00457 asnS asparaginyl-tRNA synthetase Back     alignment and domain information
>PTZ00425 asparagine-tRNA ligase; Provisional Back     alignment and domain information
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated Back     alignment and domain information
>KOG0556 consensus Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02603 asparaginyl-tRNA synthetase Back     alignment and domain information
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain Back     alignment and domain information
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type Back     alignment and domain information
>KOG0554 consensus Asparaginyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02903 aminoacyl-tRNA ligase Back     alignment and domain information
>PRK00476 aspS aspartyl-tRNA synthetase; Validated Back     alignment and domain information
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional Back     alignment and domain information
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0555 consensus Asparaginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2411 consensus Aspartyl-tRNA synthetase, mitochondrial [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00645 AsnA Asparagine synthetase (aspartate-ammonia ligase) (AsnA) catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia Back     alignment and domain information
>PRK05425 asparagine synthetase AsnA; Provisional Back     alignment and domain information
>TIGR00669 asnA aspartate--ammonia ligase, AsnA-type Back     alignment and domain information
>PTZ00213 asparagine synthetase A; Provisional Back     alignment and domain information
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase Back     alignment and domain information
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain Back     alignment and domain information
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>TIGR02367 PylS pyrrolysyl-tRNA synthetase Back     alignment and domain information
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional Back     alignment and domain information
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain Back     alignment and domain information
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated Back     alignment and domain information
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain Back     alignment and domain information
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit Back     alignment and domain information
>KOG2784 consensus Phenylalanyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional Back     alignment and domain information
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02788 phenylalanine-tRNA synthetase Back     alignment and domain information
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes Back     alignment and domain information
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain Back     alignment and domain information
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain Back     alignment and domain information
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain Back     alignment and domain information
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated Back     alignment and domain information
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain Back     alignment and domain information
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain Back     alignment and domain information
>TIGR00442 hisS histidyl-tRNA synthetase Back     alignment and domain information
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional Back     alignment and domain information
>TIGR02367 PylS pyrrolysyl-tRNA synthetase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query199
4dpg_A513 Crystal Structure Of Human Lysrs: P38/aimp2 Complex 3e-28
3bju_A521 Crystal Structure Of Tetrameric Form Of Human Lysyl 3e-28
1lyl_A504 Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexe 6e-12
1bbu_A504 Lysyl-Trna Synthetase (Lyss) Complexed With Lysine 1e-11
4ex5_A529 Crystal Structure Of Lysyl-Trna Synthetase Lysrs Fr 1e-11
3e9h_A493 Lysyl-Trna Synthetase From Bacillus Stearothermophi 2e-10
>pdb|4DPG|A Chain A, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I Length = 513 Back     alignment and structure 
Iteration: 1

 Score =  121 bits (303), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/245 (33%), Positives = 107/245 (43%), Gaps = 89/245 (36%)
Query: 1   MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM-------------- 46
           M LYMR++PEL  K  + GG  R+ EIG+ +RNEG+DLTH PE T               
Sbjct: 224 MNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLM 283
Query: 47  --------WMVMELKGSCKIRYHSNGPENEPIEIDFMPPFRKLDMIAEMERPANICMPKI 98
                    MV  + GS K+ YH +GPE +  ++DF PPFR+++M+ E+E+   + +P+ 
Sbjct: 284 EITEKMVSGMVKHITGSYKVTYHPDGPEGQAYDVDFTPPFRRINMVEELEKALGMKLPET 343
Query: 99  FLL-----------------------------------------MLLPKLSTDH---MSP 114
            L                                           + P    DH   MSP
Sbjct: 344 NLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFICDHPQIMSP 403
Query: 115 LAKGHRSKPGLTLRLELFVNKRE-----------------------DQQMGDSEAMVIDG 151
           LAK HRSK GLT R ELFV K+E                        +  GD EAM ID 
Sbjct: 404 LAKWHRSKEGLTERFELFVMKKEICNAYTELNDPMRQRQLFEEQAKAKAAGDDEAMFIDE 463
Query: 152 SFCTA 156
           +FCTA
Sbjct: 464 NFCTA 468
>pdb|3BJU|A Chain A, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna Synthetase Length = 521 Back     alignment and structure
>pdb|1LYL|A Chain A, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With Lysine Length = 504 Back     alignment and structure
>pdb|1BBU|A Chain A, Lysyl-Trna Synthetase (Lyss) Complexed With Lysine Length = 504 Back     alignment and structure
>pdb|4EX5|A Chain A, Crystal Structure Of Lysyl-Trna Synthetase Lysrs From Burkholderia Thailandensis Bound To Lysine Length = 529 Back     alignment and structure
>pdb|3E9H|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus Complexed With L-Lysylsulfamoyl Adenosine Length = 493 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query199
3bju_A521 Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, 1e-45
4ex5_A529 Lysine--tRNA ligase; structural genomics, niaid, n 1e-33
1e1o_A504 Lysyl-tRNA synthetase, heat inducible; ligase, ami 3e-33
3a74_A493 Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, 4e-33
3a5y_A345 GENX, putative lysyl-tRNA synthetase; aminoacyl-tR 1e-27
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens} Length = 521 Back     alignment and structure
 Score =  156 bits (398), Expect = 1e-45
 Identities = 82/245 (33%), Positives = 108/245 (44%), Gaps = 89/245 (36%)

Query: 1   MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM-------------- 46
           M LYMR++PEL  K  + GG  R+ EIG+ +RNEG+DLTH PE T               
Sbjct: 224 MNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLM 283

Query: 47  --------WMVMELKGSCKIRYHSNGPENEPIEIDFMPPFRKLDMIAEMERPANICMPKI 98
                    MV  + GS K+ YH +GPE +  ++DF PPFR+++M+ E+E+   + +P+ 
Sbjct: 284 EITEKMVSGMVKHITGSYKVTYHPDGPEGQAYDVDFTPPFRRINMVEELEKALGMKLPET 343

Query: 99  ----------FLLMLLPKLS-------------------------------TDH---MSP 114
                      L  +    +                                DH   MSP
Sbjct: 344 NLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFICDHPQIMSP 403

Query: 115 LAKGHRSKPGLTLRLELFVNKRE------------DQ------QM-----GDSEAMVIDG 151
           LAK HRSK GLT R ELFV K+E             Q      Q      GD EAM ID 
Sbjct: 404 LAKWHRSKEGLTERFELFVMKKEICNAYTELNDPMRQRQLFEEQAKAKAAGDDEAMFIDE 463

Query: 152 SFCTA 156
           +FCTA
Sbjct: 464 NFCTA 468
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis} Length = 529 Back     alignment and structure
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A Length = 504 Back     alignment and structure
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* Length = 493 Back     alignment and structure
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* Length = 345 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query199
4ex5_A529 Lysine--tRNA ligase; structural genomics, niaid, n 100.0
3bju_A521 Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, 100.0
3a74_A493 Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, 100.0
1e1o_A504 Lysyl-tRNA synthetase, heat inducible; ligase, ami 100.0
3a5y_A345 GENX, putative lysyl-tRNA synthetase; aminoacyl-tR 100.0
3nem_A438 Aspartyl-tRNA synthetase; rossmann fold, OB fold, 100.0
3i7f_A548 Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-bi 100.0
3m4p_A456 Ehasnrs, asparaginyl-tRNA synthetase, putative; am 100.0
2xgt_A435 Asparaginyl-tRNA synthetase, cytoplasmic; ligase, 100.0
1eov_A487 ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA sy 100.0
1wyd_A429 Hypothetical aspartyl-tRNA synthetase; archaea, LI 100.0
1l0w_A580 Aspartyl-tRNA synthetase; space-grown crystal, dim 100.0
1x54_A434 Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthe 100.0
1n9w_A422 Aspartyl-tRNA synthetase 2; biosynthetic protein; 100.0
1c0a_A585 Aspartyl tRNA synthetase; protein-RNA complex, lig 100.0
1nnh_A294 Asparaginyl-tRNA synthetase-related peptide; struc 100.0
4ah6_A 617 Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo 100.0
3dsq_A288 Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-t 98.92
12as_A330 Asparagine synthetase; ligase, nitrogen fixation; 98.55
1b7y_A350 Phers, protein (phenylalanyl-tRNA synthetase); enz 98.32
3qtc_A290 Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthet 98.2
2rhq_A294 Phenylalanyl-tRNA synthetase alpha chain; heterote 97.42
3l4g_A508 Phenylalanyl-tRNA synthetase alpha chain; aminoacy 97.34
3pco_A327 Phenylalanyl-tRNA synthetase, alpha subunit; amino 92.61
3cmq_A 415 Phenylalanyl-tRNA synthetase, mitochondrial; class 87.26
3pco_A327 Phenylalanyl-tRNA synthetase, alpha subunit; amino 85.55
1z7m_A344 ATP phosphoribosyltransferase regulatory subunit; 84.92
1qe0_A 420 Histidyl-tRNA synthetase; class II tRNA synthetase 84.34
1h4v_B 421 Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA 83.18
1nyr_A 645 Threonyl-tRNA synthetase 1; ATP, threonine, ligase 83.1
1htt_A 423 Histidyl-tRNA synthetase; complex (tRNA synthetase 80.97
1evl_A 401 Threonyl-tRNA synthetase; amino acid recognition, 80.54
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis} Back     alignment and structure
Probab=100.00  E-value=3.5e-55  Score=403.19  Aligned_cols=188  Identities=31%  Similarity=0.504  Sum_probs=147.8

Q ss_pred             CceeeecCchHHHHHHHhcCCCceEEeccccccCCCCCCCchHHHH-----------H---HHHHHHHhhHHHhcCCC-C
Q 048360            1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM-----------W---MVMELKGSCKIRYHSNG-P   65 (199)
Q Consensus         1 ~~~yL~~SPql~lk~ll~~g~~rVfeIg~~FRaE~~~~rHl~EFtm-----------~---l~~~i~~~~~~~~~~~~-~   65 (199)
                      +++||+||||||||+|++||++||||||||||||++++||||||||           +   ++++++..+........ .
T Consensus       252 ~~~yL~~SpqLylk~L~v~G~~rVyeIg~~FR~E~~~~rH~pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v~~~~~~  331 (529)
T 4ex5_A          252 MEMFLRIAPELYLKRLIVGGFERVFEINRNFRNEGVSPRHNPEFTMMEFYAAYTDYRWLMDFTERLIRQAAVDALGTATI  331 (529)
T ss_dssp             EEEEECSCSHHHHHHHHHTTCSEEEEEEEEECCSCCBTTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHSCSEE
T ss_pred             cceecccCHHHHHHHHHhcCCCcEEEeehheecCCCCCCcccHhHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHhCcCce
Confidence            3689999999999999999999999999999999999999999999           2   22232222211111100 0


Q ss_pred             CCCCccccCCCCceeeeHHHHHHhhcC-CC--------------------CCH----H-----HH----hccc------c
Q 048360           66 ENEPIEIDFMPPFRKLDMIAEMERPAN-IC--------------------MPK----I-----FL----LMLL------P  105 (199)
Q Consensus        66 ~~~~~~~~~~~p~~rity~ea~~~~~G-~~--------------------~~~----~-----~L----~~li------p  105 (199)
                      ......++++.||+|+||.||++++.| ++                    ...    +     .+    ..++      |
T Consensus       332 ~~~~~~id~~~pf~Rity~eAi~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~g~l~~e~~~~~vE~~l~~P  411 (529)
T 4ex5_A          332 QYQGRELDLAQPFHRLTITQAIQKYAPSYTDGQLSDDAFLRSELKRLGVDVTQPAFLNAGIGALQLALFEETAEAQLWEP  411 (529)
T ss_dssp             EETTEEEETTSCCEEEEHHHHHHHHCTTSCHHHHTCHHHHHHHHHHTTCCTTSGGGTTCCHHHHHHHHHHHHTGGGCCSC
T ss_pred             ecCceeeccCCCceEEEHHHHHHHHhCCCChhhcCCHHHHHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHhccccCCC
Confidence            012235678899999999999998776 32                    111    1     11    1111      9


Q ss_pred             hhhccc---CCCcccccCCCCceeEEEEEeecchh-----------------------hhhcCCccccCCcHHHHHHHhc
Q 048360          106 KLSTDH---MSPLAKGHRSKPGLTLRLELFVNKRE-----------------------DQQMGDSEAMVIDGSFCTAHAK  159 (199)
Q Consensus       106 ~fv~dy---~~plak~~~~~p~~~~rFel~i~G~E-----------------------~~~~g~~~~~~~d~~yl~a~~~  159 (199)
                      ||||||   +|||||++++||++|+|||||++|.|                       .+..|+++++.+|+|||+|++|
T Consensus       412 ~FI~dyP~~~splak~~~~~p~~~~rFeL~i~G~EianG~~el~Dp~~q~~rf~~q~~~~~~gd~ea~~~De~yl~aley  491 (529)
T 4ex5_A          412 TFIIDYPIEVSPLARESDTVAGITERFELFITGREIANGFSELNDPEDQAARFKKQVEQKDAGDEEAMFFDADYIRALEY  491 (529)
T ss_dssp             EEEEEEEGGGCTTBCBCSSSTTEEEEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTTSCCCCHHHHHHHHT
T ss_pred             EEEECCchhhCCCcccCCCCCCceEEEEEEECCEEEecchhccCCHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHc
Confidence            999999   99999999999999999999999999                       1345677888899999999999


Q ss_pred             CCCCC-cceecHHHHH-HHhCCCccceeeec
Q 048360          160 KQTIS-YFATLIDGVS-FVTETKERHLVYAR  188 (199)
Q Consensus       160 G~pPh-G~giGleRl~-~l~g~~~i~~v~~~  188 (199)
                      ||||| |||||||||+ ++||++||++|++.
T Consensus       492 G~PP~gG~GlGiDRLvMlltg~~~IRdVi~F  522 (529)
T 4ex5_A          492 GMPPTGGCGIGIDRLVMLLTDSPTIRDVLLF  522 (529)
T ss_dssp             CCCCEEEEEEEHHHHHHHHHTCSSGGGGCSS
T ss_pred             CCCCCcEEEEeHHHHHHHHcCCCcHHHeecC
Confidence            99999 9999999965 99999999988765
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens} Back     alignment and structure
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* Back     alignment and structure
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A Back     alignment and structure
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* Back     alignment and structure
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* Back     alignment and structure
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} Back     alignment and structure
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A Back     alignment and structure
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* Back     alignment and structure
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* Back     alignment and structure
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} Back     alignment and structure
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A Back     alignment and structure
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A Back     alignment and structure
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* Back     alignment and structure
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* Back     alignment and structure
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* Back     alignment and structure
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens} Back     alignment and structure
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A Back     alignment and structure
>12as_A Asparagine synthetase; ligase, nitrogen fixation; HET: AMP; 2.20A {Escherichia coli K12} SCOP: d.104.1.1 PDB: 11as_A* Back     alignment and structure
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A* Back     alignment and structure
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A* Back     alignment and structure
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A* Back     alignment and structure
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Back     alignment and structure
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} Back     alignment and structure
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A Back     alignment and structure
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} Back     alignment and structure
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A* Back     alignment and structure
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1 Back     alignment and structure
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A Back     alignment and structure
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Back     alignment and structure
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A* Back     alignment and structure
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 199
d1c0aa3346 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synt 5e-07
d1l0wa3356 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synt 2e-05
d1nnha_293 d.104.1.1 (A:) Hypothetical protein PF1951 {Archae 6e-04
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Length = 346 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Aspartyl-tRNA synthetase (AspRS)
species: Escherichia coli [TaxId: 562]

 Score = 46.7 bits (110), Expect = 5e-07
 Identities = 14/47 (29%), Positives = 22/47 (46%)

Query: 1   MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTMW 47
               +  SP+L  +  +  GF R  +I KC+R+E +     PE T  
Sbjct: 80  KFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQPEFTQI 126
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Length = 356 Back     information, alignment and structure
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 293 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query199
d1e1oa2342 Lysyl-tRNA synthetase (LysRS) {Escherichia coli, g 100.0
d1eova2353 Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S 100.0
d1nnha_293 Hypothetical protein PF1951 {Archaeon Pyrococcus f 100.0
d1b8aa2335 Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococ 100.0
d1l0wa3356 Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph 100.0
d1c0aa3346 Aspartyl-tRNA synthetase (AspRS) {Escherichia coli 100.0
d1n9wa2304 Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph 100.0
d1jjca_266 Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS 92.32
d1jjca_266 Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS 91.52
d12asa_327 Asparagine synthetase {Escherichia coli [TaxId: 56 80.21
>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Lysyl-tRNA synthetase (LysRS)
species: Escherichia coli, gene lysU [TaxId: 562]

Probab=100.00  E-value=5e-49  Score=343.24  Aligned_cols=187  Identities=30%  Similarity=0.425  Sum_probs=141.7

Q ss_pred             ceeeecCchHHHHHHHhcCCCceEEeccccccCCCCCCCchHHHH-----------HHHH---HHHHhhHHHhcCCCC-C
Q 048360            2 ELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM-----------WMVM---ELKGSCKIRYHSNGP-E   66 (199)
Q Consensus         2 ~~yL~~SPql~lk~ll~~g~~rVfeIg~~FRaE~~~~rHl~EFtm-----------~l~~---~i~~~~~~~~~~~~~-~   66 (199)
                      ++||+||||+|||+++++|++||||||||||||++++||+|||||           +++.   +++..+......... .
T Consensus        72 ~~yL~~Spql~~k~~l~~g~~~vf~i~p~FR~E~~~~rHl~EFtmlE~e~a~~~~~d~m~~~e~l~~~i~~~~~~~~~~~  151 (342)
T d1e1oa2          72 DMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVT  151 (342)
T ss_dssp             EEEECSCSHHHHHHHHHHTCCEEEEEEEEECCCCCCC-CCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHSSSEEE
T ss_pred             ccccchhhHHHHHHHhhhcccceeeeccccccccccccchHHHHHHHHHHHhhhhhhHHHhhhHHHHHHHHHHhCcchhh
Confidence            589999999999999999999999999999999999999999999           2322   222222111111100 0


Q ss_pred             CCCccccCCCCceeeeHHHHHHhhcCCCCCH-----H-----------------HHh----c----cc------chhhcc
Q 048360           67 NEPIEIDFMPPFRKLDMIAEMERPANICMPK-----I-----------------FLL----M----LL------PKLSTD  110 (199)
Q Consensus        67 ~~~~~~~~~~p~~rity~ea~~~~~G~~~~~-----~-----------------~L~----~----li------p~fv~d  110 (199)
                      ......++..||+++++.++++++.+.....     +                 .++    +    ++      |+||||
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~fi~~  231 (342)
T d1e1oa2         152 YGEHVFDFGKPFEKLTMREAIKKYRPETDMADLDNFDAAKALAESIGITVEKSWGLGRIVTEIFDEVAEAHLIQPTFITE  231 (342)
T ss_dssp             ETTEEEETTSCCEEEEHHHHHHHHSTTCCGGGGGSHHHHHHHHHHTTCCCCTTCCHHHHHHHHHHHHTGGGCCSCEEEEC
T ss_pred             ccchhcccCCchhhhhHHHHHHHHhccccHhhhhhhHHHHHHHHHcCCCcccccchhHHHHHHHHHhhHhhccCCCcCCC
Confidence            0112345678999999999998775432110     0                 011    1    11      999999


Q ss_pred             c---CCCcccccCCCCceeEEEEEeecchh-----------------------hhhcCCccccCCcHHHHHHHhcCCCCC
Q 048360          111 H---MSPLAKGHRSKPGLTLRLELFVNKRE-----------------------DQQMGDSEAMVIDGSFCTAHAKKQTIS  164 (199)
Q Consensus       111 y---~~plak~~~~~p~~~~rFel~i~G~E-----------------------~~~~g~~~~~~~d~~yl~a~~~G~pPh  164 (199)
                      |   ++|||+.+++|+.+++||||+++|.|                       .+..+.++..++|+|||+|++||+|||
T Consensus       232 ~P~~~~~f~~~~~~~~~~~~~fdl~~~g~El~~G~~r~~d~~~~~~r~~~~~~~~~~~~~~~~~~d~~yl~a~~~G~pPh  311 (342)
T d1e1oa2         232 YPAEVSPLARRNDVNPEITDRFEFFIGGREIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPT  311 (342)
T ss_dssp             CBGGGCTTBCBCSSCTTBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTTCCCCCHHHHHHHHHHCCSE
T ss_pred             CccccChhhccccccchhhhhhhcccCCEeecCCccccCCHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHHhhCCCCCc
Confidence            9   99999999899999999999999998                       123455566778899999999999999


Q ss_pred             -cceecHHHHH-HHhCCCccceeeec
Q 048360          165 -YFATLIDGVS-FVTETKERHLVYAR  188 (199)
Q Consensus       165 -G~giGleRl~-~l~g~~~i~~v~~~  188 (199)
                       |||||+|||+ +++|.+||++|+|.
T Consensus       312 ~G~glG~dRlvm~l~g~~nIrdvi~F  337 (342)
T d1e1oa2         312 AGLGIGIDRMIMLFTNSHTIRDVILF  337 (342)
T ss_dssp             EEEEEEHHHHHHHHHTCSSGGGTSSS
T ss_pred             cchhHHHHHHHHHHhCCCcHHHhccC
Confidence             9999999965 99999999988775
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Back     information, alignment and structure
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Back     information, alignment and structure
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Back     information, alignment and structure
>d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d12asa_ d.104.1.1 (A:) Asparagine synthetase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure