Citrus Sinensis ID: 048364
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 400 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FJY7 | 620 | Pentatricopeptide repeat- | yes | no | 0.972 | 0.627 | 0.4 | 9e-86 | |
| Q9C501 | 538 | Pentatricopeptide repeat- | no | no | 0.975 | 0.724 | 0.387 | 5e-80 | |
| Q9LSB8 | 687 | Putative pentatricopeptid | no | no | 0.975 | 0.567 | 0.345 | 4e-78 | |
| Q9SZT8 | 632 | Pentatricopeptide repeat- | no | no | 0.945 | 0.598 | 0.370 | 2e-75 | |
| Q9MA50 | 500 | Pentatricopeptide repeat- | no | no | 0.965 | 0.772 | 0.374 | 5e-75 | |
| Q9SIL5 | 534 | Pentatricopeptide repeat- | no | no | 0.975 | 0.730 | 0.355 | 1e-74 | |
| Q9CA54 | 643 | Pentatricopeptide repeat- | no | no | 0.972 | 0.604 | 0.352 | 3e-73 | |
| Q9FNN7 | 511 | Pentatricopeptide repeat- | no | no | 0.897 | 0.702 | 0.367 | 6e-73 | |
| Q9LXF2 | 548 | Pentatricopeptide repeat- | no | no | 0.972 | 0.709 | 0.344 | 1e-72 | |
| Q9FLS9 | 499 | Pentatricopeptide repeat- | no | no | 0.977 | 0.783 | 0.349 | 2e-72 |
| >sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 317 bits (812), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 158/395 (40%), Positives = 247/395 (62%), Gaps = 6/395 (1%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
L+ +M S P ++++ +LK+C++ + +H+ I KLG+ + VY SL++ Y
Sbjct: 102 LYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYA 161
Query: 63 VT-SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
VT +F A LFD +PE + V+WN++IKGY K+G + A F +M +N SW+ MI+
Sbjct: 162 VTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISG 221
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y+ A L+LF EM N + PD +++ LS C+ LG+ L GK H ++ K
Sbjct: 222 YVQADMNKEALQLFHEM-QNSDVEPDNVSLANALSACAQLGA--LEQGKWIHSYLNKTRI 278
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
++ + +L+DMYAKCG ++ AL VF+ +++++V +WTALI G A+ G+ +A+S F
Sbjct: 279 RMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFME 338
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
MQ G+KPN +TFT VLTAC +TGLV+EG+ F ++ +Y+L+P I+HYGC+VDL G+AG
Sbjct: 339 MQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAG 398
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
L+EA I+ M L+PN +IWG+ L AC+ HK ++ E I + L + P + GG +
Sbjct: 399 LLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEE-IGEILIAIDPYH-GGRYVHK 456
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVIS 396
+++ M++KW+ A R+LM Q V K G S IS
Sbjct: 457 ANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTIS 491
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C501|PPR70_ARATH Pentatricopeptide repeat-containing protein At1g33350 OS=Arabidopsis thaliana GN=PCMP-E57 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 298 bits (763), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 155/400 (38%), Positives = 239/400 (59%), Gaps = 10/400 (2%)
Query: 2 QLFSQMHRQSVP-SDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
F M +SVP + F +LKS + ++ +H+H+ K GF +V V T+LLH
Sbjct: 111 SFFRLMVNRSVPRPNHFIYPLVLKSTPYLSSAFSTPLVHTHLFKSGFHLYVVVQTALLHS 170
Query: 61 YV--VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
Y V+ AR+LFDE+ ERN V+W M+ GY++SG++ A FE MP R+V SW+A+
Sbjct: 171 YASSVSHITLARQLFDEMSERNVVSWTAMLSGYARSGDISNAVALFEDMPERDVPSWNAI 230
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
+AA G + + LFR MI+ + P+++T+ VLS C+ G+ L + K H F +
Sbjct: 231 LAACTQNGLFLEAVSLFRRMINEPSIRPNEVTVVCVLSACAQTGT--LQLAKGIHAFAYR 288
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
+ + ++ LVD+Y KCG L+ A VF++ ++++ +W ++I A G SE+A+++
Sbjct: 289 RDLSSDVFVSNSLVDLYGKCGNLEEASSVFKMASKKSLTAWNSMINCFALHGRSEEAIAV 348
Query: 239 FEMM---QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295
FE M +KP+ +TF G+L AC H GLV +GR YF ++ + +EPRI+HYGC++D
Sbjct: 349 FEEMMKLNINDIKPDHITFIGLLNACTHGGLVSKGRGYFDLMTNRFGIEPRIEHYGCLID 408
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355
L G+AG +EA EV+ TM+++ + IWGS L ACK H D+AE +K L + P N+G
Sbjct: 409 LLGRAGRFDEALEVMSTMKMKADEAIWGSLLNACKIHGHLDLAEVAVKN-LVALNP-NNG 466
Query: 356 GVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
G ++ +LY WE A R RK++ +QN K G S I
Sbjct: 467 GYVAMMANLYGEMGNWEEARRARKMIKHQNAYKPPGWSRI 506
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 292 bits (747), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 137/396 (34%), Positives = 247/396 (62%), Gaps = 6/396 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++L +M R V S ++L +L +C+ + + +H ++ + + + +L++
Sbjct: 221 IELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNA 280
Query: 61 YVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y A ++F + R+ ++W +++KGY + GN+ AR +F++MP+R+ SW+ MI
Sbjct: 281 YAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMI 340
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
YL AG ++ L++FREM S G+ PD+ T+ +VL+ C+HLGS L +G+ +I KN
Sbjct: 341 DGYLRAGCFNESLEIFREMQS-AGMIPDEFTMVSVLTACAHLGS--LEIGEWIKTYIDKN 397
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+ + + + L+DMY KCG + A VF M++R+ +WTA++ G A+ G ++A+ +F
Sbjct: 398 KIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVF 457
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
MQ ++P+++T+ GVL+AC H+G+VD+ RK+F + ++ +EP + HYGCMVD+ G+
Sbjct: 458 FQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGR 517
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG ++EAYE++R M + PN I+WG+ L A + H MAE K+ L + +P+N G V+
Sbjct: 518 AGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILEL-EPDN-GAVYA 575
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+C++Y ++W+ VR+ +++ ++K G S+I
Sbjct: 576 LLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLI 611
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 283 bits (723), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 149/402 (37%), Positives = 237/402 (58%), Gaps = 24/402 (5%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
L+ Q+ + + F+ +LKSC+ + + H+H+LK G YVAT L+ Y
Sbjct: 117 LYVQLLSSEINPNEFTFSSLLKSCSTKSGKLI----HTHVLKFGLGIDPYVATGLVDVYA 172
Query: 63 ----VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
V S A+K+FD +PER+ V+ MI Y+K GNV AR F+ M R++ SW+ M
Sbjct: 173 KGGDVVS---AQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVM 229
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
I Y G + L LF+++++ PD++T+ A LS CS +G+ L G+ H F+
Sbjct: 230 IDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGA--LETGRWIHVFVKS 287
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
+ LN ++ T L+DMY+KCG L+ A++VF +++++W A+I G A GYS+DAL L
Sbjct: 288 SRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRL 347
Query: 239 FEMMQA-TGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
F MQ TG++P ++TF G L AC H GLV+EG + F+ + +EY ++P+I+HYGC+V L
Sbjct: 348 FNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLL 407
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQF----DMAERVIKQALRMVKPEN 353
G+AG L+ AYE I+ M ++ + ++W S L +CK H F ++AE +I ++
Sbjct: 408 GRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIK------ 461
Query: 354 DGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ G++ L+ ++Y +EG +VR LM + + K G S I
Sbjct: 462 NSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTI 503
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9MA50|PPR13_ARATH Pentatricopeptide repeat-containing protein At1g05750, chloroplastic OS=Arabidopsis thaliana GN=PDE247 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 281 bits (720), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 149/398 (37%), Positives = 243/398 (61%), Gaps = 12/398 (3%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLT--VIHHLHSHILKLGFI-SHVYVATSLLHE 60
FS M V + + + +L C F + + + LH + KLG +HV V T+++
Sbjct: 59 FSDMTLAGVEPNHITFIALLSGCGDFTSGSEALGDLLHGYACKLGLDRNHVMVGTAIIGM 118
Query: 61 YVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y F AR +FD + ++N+VTWNTMI GY +SG V A F++MP R++ SW+AMI
Sbjct: 119 YSKRGRFKKARLVFDYMEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMI 178
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
++ G + L FREM G+ PD + I A L+ C++LG+ L G H +++
Sbjct: 179 NGFVKKGYQEEALLWFREM-QISGVKPDYVAIIAALNACTNLGA--LSFGLWVHRYVLSQ 235
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+++ N +++ L+D+Y +CG +++A VF ME+R V+SW ++I G A G + ++L F
Sbjct: 236 DFKNNVRVSNSLIDLYCRCGCVEFARQVFYNMEKRTVVSWNSVIVGFAANGNAHESLVYF 295
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
MQ G KP+ +TFTG LTAC H GLV+EG +YF+++ +Y + PRI+HYGC+VDL+ +
Sbjct: 296 RKMQEKGFKPDAVTFTGALTACSHVGLVEEGLRYFQIMKCDYRISPRIEHYGCLVDLYSR 355
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH-KQFDMAERVIKQALRM-VKPENDGGV 357
AG LE+A +++++M ++PN ++ GS LAAC H +AER++K + VK ++
Sbjct: 356 AGRLEDALKLVQSMPMKPNEVVIGSLLAACSNHGNNIVLAERLMKHLTDLNVKSHSN--- 412
Query: 358 FTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++ ++Y + KWEGA ++R+ M ++K G S I
Sbjct: 413 YVILSNMYAADGKWEGASKMRRKMKGLGLKKQPGFSSI 450
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 280 bits (717), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 141/397 (35%), Positives = 236/397 (59%), Gaps = 7/397 (1%)
Query: 1 MQLFSQMHRQSVP-SDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
++++ Q+ R+S D F+ + KSC + + +H H+ K G HV +L+
Sbjct: 93 IRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRFHVVTENALID 152
Query: 60 EYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
Y+ A K+FDE+ ER+ ++WN+++ GY++ G + +A+ F M + + SW+AM
Sbjct: 153 MYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAM 212
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
I+ Y G Y + FREM G+ PD++++ +VL C+ LGS L +GK H + +
Sbjct: 213 ISGYTGIGCYVEAMDFFREM-QLAGIEPDEISLISVLPSCAQLGS--LELGKWIHLYAER 269
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
+ + L++MY+KCG + A+ +F ME ++VISW+ +I G A+ G + A+
Sbjct: 270 RGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIET 329
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
F MQ VKPN +TF G+L+AC H G+ EG +YF M+ ++Y +EP+I+HYGC++D+
Sbjct: 330 FNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLRYFDMMRQDYQIEPKIEHYGCLIDVLA 389
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358
+AG LE A E+ +TM ++P+ IWGS L++C+ D+A V L ++PE D G +
Sbjct: 390 RAGKLERAVEITKTMPMKPDSKIWGSLLSSCRTPGNLDVA-LVAMDHLVELEPE-DMGNY 447
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++Y KWE R+RK++ N+N++K G S+I
Sbjct: 448 VLLANIYADLGKWEDVSRLRKMIRNENMKKTPGGSLI 484
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CA54|PP122_ARATH Pentatricopeptide repeat-containing protein At1g74630 OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 276 bits (705), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 150/426 (35%), Positives = 234/426 (54%), Gaps = 37/426 (8%)
Query: 3 LFSQMHRQS-VPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
+F +M R+ V DSFS ++K+ +F +L +H LK G SH++V T+L+ Y
Sbjct: 92 VFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQMHCQALKHGLESHLFVGTTLIGMY 151
Query: 62 V-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
FARK+FDE+ + N V WN +I + +V AR+ F++M +RN SW+ M+A
Sbjct: 152 GGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGNDVAGAREIFDKMLVRNHTSWNVMLA 211
Query: 121 AYLNAGAYDPGLKLFREM------------------------------ISNEGLTPDQMT 150
Y+ AG + ++F EM + G++P++++
Sbjct: 212 GYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVS 271
Query: 151 IGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFEL 210
+ VLS CS GS GK HGF+ K + + L+DMY++CG + A +VFE
Sbjct: 272 LTGVLSACSQSGS--FEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEG 329
Query: 211 MEE-RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDE 269
M+E R ++SWT++I G A G E+A+ LF M A GV P+ ++F +L AC H GL++E
Sbjct: 330 MQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEE 389
Query: 270 GRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAAC 329
G YF + Y +EP I+HYGCMVDL+G++G L++AY+ I M + P I+W + L AC
Sbjct: 390 GEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGAC 449
Query: 330 KEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKA 389
H ++AE+V KQ L + P N G + L+ + Y KW+ +RK M+ Q ++K
Sbjct: 450 SSHGNIELAEQV-KQRLNELDPNNSGDL-VLLSNAYATAGKWKDVASIRKSMIVQRIKKT 507
Query: 390 RGSSVI 395
S++
Sbjct: 508 TAWSLV 513
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FNN7|PP371_ARATH Pentatricopeptide repeat-containing protein At5g08510 OS=Arabidopsis thaliana GN=PCMP-E20 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 275 bits (702), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 224/365 (61%), Gaps = 6/365 (1%)
Query: 38 LHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGN 96
LHS + GF S + T+L+ Y + + AR++FDE+ +R+ WN MI GY + G+
Sbjct: 104 LHSQFFRSGFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITGYQRRGD 163
Query: 97 VCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLS 156
+ A + F+ MP +NV SW+ +I+ + G Y LK+F M ++ + P+ +T+ +VL
Sbjct: 164 MKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITVVSVLP 223
Query: 157 GCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFE-LMEERN 215
C++LG L +G+ G+ +N + N + ++MY+KCG + A +FE L +RN
Sbjct: 224 ACANLGE--LEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEELGNQRN 281
Query: 216 VISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFK 275
+ SW ++I A G ++AL+LF M G KP+ +TF G+L ACVH G+V +G++ FK
Sbjct: 282 LCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVHGGMVVKGQELFK 341
Query: 276 MIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQF 335
++E + + P+++HYGCM+DL G+ G L+EAY++I+TM ++P+ ++WG+ L AC H
Sbjct: 342 SMEEVHKISPKLEHYGCMIDLLGRVGKLQEAYDLIKTMPMKPDAVVWGTLLGACSFHGNV 401
Query: 336 DMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++AE + +AL ++P N G ++ ++Y NEKW+G R+RKLM + + KA G S
Sbjct: 402 EIAE-IASEALFKLEPTNPGNC-VIMSNIYAANEKWDGVLRMRKLMKKETMTKAAGYSYF 459
Query: 396 SSLSV 400
+ V
Sbjct: 460 VEVGV 464
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LXF2|PP385_ARATH Pentatricopeptide repeat-containing protein At5g15300 OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 274 bits (700), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 149/432 (34%), Positives = 246/432 (56%), Gaps = 43/432 (9%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLL-- 58
+ L+++M ++ V D ++ +LK+C+ + H +++ GF+ + YV +L+
Sbjct: 97 VSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAFHGKVVRHGFVLNEYVKNALILF 156
Query: 59 --------------------HEYVVTSF--GFARK--------LFDELPERNAVTWNTMI 88
H+ +S G+A++ LFDE+P ++ V WN MI
Sbjct: 157 HANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDEMPYKDQVAWNVMI 216
Query: 89 KGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQ 148
G K + AR+ F+R ++V +W+AMI+ Y+N G L +F+EM + G PD
Sbjct: 217 TGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALGIFKEM-RDAGEHPDV 275
Query: 149 MTIGAVLSGCSHLGSVGLLMGKSAHGFI-----VKNEWELNEQIATILVDMYAKCGFLKY 203
+TI ++LS C+ LG L GK H +I V + + I L+DMYAKCG +
Sbjct: 276 VTILSLLSACAVLGD--LETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGSIDR 333
Query: 204 ALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVH 263
A+ VF +++R++ +W LI G A ++E ++ +FE MQ V PNE+TF GV+ AC H
Sbjct: 334 AIEVFRGVKDRDLSTWNTLIVGLALH-HAEGSIEMFEEMQRLKVWPNEVTFIGVILACSH 392
Query: 264 TGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWG 323
+G VDEGRKYF ++ + Y++EP I+HYGCMVD+ G+AG LEEA+ + +M++EPN I+W
Sbjct: 393 SGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRAGQLEEAFMFVESMKIEPNAIVWR 452
Query: 324 SFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383
+ L ACK + ++ + ++ L M K E+ G + L+ ++Y +W+G ++VRK+ +
Sbjct: 453 TLLGACKIYGNVELGKYANEKLLSMRKDES--GDYVLLSNIYASTGQWDGVQKVRKMFDD 510
Query: 384 QNVRKARGSSVI 395
V+K G S+I
Sbjct: 511 TRVKKPTGVSLI 522
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FLS9|PP441_ARATH Pentatricopeptide repeat-containing protein At5g61800 OS=Arabidopsis thaliana GN=PCMP-E8 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 273 bits (697), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 141/404 (34%), Positives = 231/404 (57%), Gaps = 13/404 (3%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNN--LTVIHHLHSHILKLGFISHVYVATSLLH 59
+ F +M R+SVP D + + K+C N LT++ LH L+ G +S ++ +L+
Sbjct: 101 RFFVEMRRRSVPPDFHTFPFVFKACAAKKNGDLTLVKTLHCQALRFGLLSDLFTLNTLIR 160
Query: 60 EY-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
Y ++ A +LFDE P+R+ VT+N +I G K+ + AR+ F+ MPLR++ SW+++
Sbjct: 161 VYSLIAPIDSALQLFDENPQRDVVTYNVLIDGLVKAREIVRARELFDSMPLRDLVSWNSL 220
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
I+ Y +KLF EM++ GL PD + I + LS C+ G GK+ H + +
Sbjct: 221 ISGYAQMNHCREAIKLFDEMVA-LGLKPDNVAIVSTLSACAQSGD--WQKGKAIHDYTKR 277
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
++ +AT LVD YAKCGF+ A+ +FEL ++ + +W A+I G A G E +
Sbjct: 278 KRLFIDSFLATGLVDFYAKCGFIDTAMEIFELCSDKTLFTWNAMITGLAMHGNGELTVDY 337
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
F M ++G+KP+ +TF VL C H+GLVDE R F + YD+ ++HYGCM DL G
Sbjct: 338 FRKMVSSGIKPDGVTFISVLVGCSHSGLVDEARNLFDQMRSLYDVNREMKHYGCMADLLG 397
Query: 299 KAGFLEEAYEVIRTMRLE----PNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEND 354
+AG +EEA E+I M + ++ W L C+ H ++AE+ + ++ + PE D
Sbjct: 398 RAGLIEEAAEMIEQMPKDGGNREKLLAWSGLLGGCRIHGNIEIAEKAANR-VKALSPE-D 455
Query: 355 GGVFTLICDLYTMNEKWEGAERVRKLM-LNQNVRKARGSSVISS 397
GGV+ ++ ++Y E+WE +VR+++ ++ V+K G S + S
Sbjct: 456 GGVYKVMVEMYANAERWEEVVKVREIIDRDKKVKKNVGFSKVLS 499
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 400 | ||||||
| 224075377 | 431 | predicted protein [Populus trichocarpa] | 0.985 | 0.914 | 0.675 | 1e-158 | |
| 449434194 | 436 | PREDICTED: pentatricopeptide repeat-cont | 0.985 | 0.903 | 0.637 | 1e-152 | |
| 255541938 | 319 | pentatricopeptide repeat-containing prot | 0.797 | 1.0 | 0.712 | 1e-141 | |
| 359472798 | 324 | PREDICTED: pentatricopeptide repeat-cont | 0.81 | 1.0 | 0.676 | 1e-134 | |
| 357511639 | 417 | Pentatricopeptide repeat-containing prot | 0.967 | 0.928 | 0.570 | 1e-122 | |
| 297738046 | 268 | unnamed protein product [Vitis vinifera] | 0.577 | 0.861 | 0.702 | 5e-95 | |
| 357125448 | 440 | PREDICTED: pentatricopeptide repeat-cont | 0.985 | 0.895 | 0.440 | 1e-88 | |
| 115440507 | 440 | Os01g0800400 [Oryza sativa Japonica Grou | 0.98 | 0.890 | 0.435 | 2e-87 | |
| 449467070 | 617 | PREDICTED: pentatricopeptide repeat-cont | 0.975 | 0.632 | 0.404 | 3e-86 | |
| 312190418 | 616 | pentatricopeptide repeat [Eutrema parvul | 0.972 | 0.631 | 0.416 | 6e-86 |
| >gi|224075377|ref|XP_002304609.1| predicted protein [Populus trichocarpa] gi|222842041|gb|EEE79588.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 565 bits (1456), Expect = e-158, Method: Compositional matrix adjust.
Identities = 267/395 (67%), Positives = 325/395 (82%), Gaps = 1/395 (0%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+QL++ MHRQS+P D+FSIL LKSCTH NLT+IHHLHSHI+KLGF +HVYV+T LLH
Sbjct: 38 LQLYTHMHRQSIPFDTFSILFTLKSCTHLKNLTIIHHLHSHIIKLGFNTHVYVSTCLLHA 97
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
Y V SF A LFDE+P+RN VTWNTMI GYS+SG++ +AR FE MP+R+ ASWSAMI
Sbjct: 98 YAVMSFDQACDLFDEMPQRNIVTWNTMITGYSRSGSINKARSLFEAMPVRDAASWSAMIT 157
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y+N G D GL F+EM++NE PDQ+T+G+VLSGC+H+GS+GLL GKS HGF+VKN
Sbjct: 158 CYINNGFRDQGLSFFQEMMANENPKPDQVTVGSVLSGCAHMGSLGLLAGKSVHGFVVKNG 217
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
WELN I T+LVDMYAKCGF K A+ VF LM+ERNV +WTALICG+A G+ ++ LSLF+
Sbjct: 218 WELNVDIGTLLVDMYAKCGFFKNAVWVFVLMQERNVSTWTALICGAAQHGFCQEVLSLFK 277
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
MMQ GV+PNEMTFTG+L AC GL++EGRKYFKMI +E LEPRIQHYGCMVD+FGKA
Sbjct: 278 MMQEAGVRPNEMTFTGILNACARKGLIEEGRKYFKMI-KETGLEPRIQHYGCMVDMFGKA 336
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G LEEAYEVI+ M EPN++IWGSFL+ACK HKQFD+A+RVI Q LR +KPENDGG+++L
Sbjct: 337 GLLEEAYEVIKEMEFEPNIVIWGSFLSACKMHKQFDIADRVIGQVLRDIKPENDGGIYSL 396
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ DLY +N+KW+ AERVR L+LNQNVRKARGSS I
Sbjct: 397 VSDLYVLNKKWDDAERVRNLVLNQNVRKARGSSCI 431
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449434194|ref|XP_004134881.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 253/397 (63%), Positives = 315/397 (79%), Gaps = 3/397 (0%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ +SQMHRQSVP DSFSIL +LK+C NNL+++HHLH+HI KLGF +HV+VATSLLH
Sbjct: 41 LAFYSQMHRQSVPHDSFSILFMLKACASSNNLSILHHLHAHITKLGFTTHVFVATSLLHS 100
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
YV+ SF AR +FDE+P +N+VTWNTMI GYSK+G+V AR F+RMP R++ASWSAMIA
Sbjct: 101 YVLHSFQLARLVFDEMPHKNSVTWNTMISGYSKAGDVHTARQLFDRMPSRDLASWSAMIA 160
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
AY+N Y L LF++MI N G+ PDQM G++L+GC+H+GS+GLL GKS HGF+VKN
Sbjct: 161 AYINNRNYRGALLLFQDMIIN-GINPDQMAAGSILNGCAHMGSLGLLAGKSVHGFVVKNR 219
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
WELN ++ T+LVDMYAKCGFLKYA +F LM ERNV +WTALICG AH G ++AL LFE
Sbjct: 220 WELNLELGTVLVDMYAKCGFLKYACQIFNLMSERNVRTWTALICGLAHHGCCKEALVLFE 279
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M+ GV+PNE TFTGVL+ACVH GLV EGRKYF MI EE LE RIQHYGC VDL G++
Sbjct: 280 TMRHEGVEPNEFTFTGVLSACVHAGLVQEGRKYFNMI-EECGLEIRIQHYGCFVDLLGRS 338
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G LEEAY VI++MRLEPNVI+W S L+ACK+HK FD+AERVI+Q L ++P+N GV++L
Sbjct: 339 GLLEEAYGVIKSMRLEPNVIVWSSLLSACKQHKSFDLAERVIEQILEKIEPDNHAGVYSL 398
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISS 397
+ DLY + +KW+ AE +R L LNQ+VRK R S+I S
Sbjct: 399 VSDLYVLQDKWDDAENIRNL-LNQHVRKGRAYSLIRS 434
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255541938|ref|XP_002512033.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223549213|gb|EEF50702.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust.
Identities = 228/320 (71%), Positives = 278/320 (86%), Gaps = 1/320 (0%)
Query: 76 LPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLF 135
+PERN +TWNTMI GYS+SGN+ +AR FFE MPLR+V SWSAMI AY+N G +D GL LF
Sbjct: 1 MPERNTITWNTMITGYSRSGNIDKARAFFEEMPLRDVGSWSAMITAYINHGRWDRGLLLF 60
Query: 136 REMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMY 195
REM++N L PDQ+T+G VLSGC+H+G +GLL+GKSAHGFI+KN WELN +I T+LVDMY
Sbjct: 61 REMMTNSELKPDQVTVGTVLSGCTHMGFLGLLVGKSAHGFIMKNRWELNVEIGTVLVDMY 120
Query: 196 AKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFT 255
KCG+LK A+ VF+LM+ERNV++WTALICG+A GYSE+ LSLF MMQ ++PNE+TFT
Sbjct: 121 VKCGYLKNAIRVFDLMKERNVMTWTALICGAAQHGYSEETLSLFNMMQEAKIRPNELTFT 180
Query: 256 GVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRL 315
G+L C H+GLV+EG+KYF+MI EEY LE RIQHYGCMVDLFGKAG L+EAY VI+TM++
Sbjct: 181 GILNVCAHSGLVEEGKKYFRMI-EEYGLERRIQHYGCMVDLFGKAGLLDEAYNVIKTMKV 239
Query: 316 EPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAE 375
E NV+IWGSFL+ACKEHK+FDMAERVI+Q L+++KPENDGG++TL+CDLYT NEKW+ AE
Sbjct: 240 ENNVVIWGSFLSACKEHKKFDMAERVIEQVLKVIKPENDGGIYTLVCDLYTSNEKWDDAE 299
Query: 376 RVRKLMLNQNVRKARGSSVI 395
RVRKLMLNQNVRKARGSS I
Sbjct: 300 RVRKLMLNQNVRKARGSSFI 319
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359472798|ref|XP_002274984.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 483 bits (1242), Expect = e-134, Method: Compositional matrix adjust.
Identities = 220/325 (67%), Positives = 271/325 (83%), Gaps = 1/325 (0%)
Query: 76 LPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLF 135
+P +N VTWNTMI YSKSG+V +AR FE+MPLR++ASWSAM+A Y+ G + GL LF
Sbjct: 1 MPHKNTVTWNTMITAYSKSGDVKKARLVFEQMPLRDLASWSAMVAGYMYGGEWHSGLALF 60
Query: 136 REMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMY 195
REM+ NEGL PD++T+G+VLSGC+ +GS+GLL+G+S HGF KN WEL+ + T+LVDMY
Sbjct: 61 REMVVNEGLRPDKVTLGSVLSGCARMGSLGLLVGRSIHGFTAKNGWELSVDLGTVLVDMY 120
Query: 196 AKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFT 255
AKCGFLK A VF+LM+E+NV SWTALICGSA GY ++ALS+FE+MQ GVKPNEMTFT
Sbjct: 121 AKCGFLKSAFRVFDLMQEKNVASWTALICGSAQHGYGKEALSMFELMQDMGVKPNEMTFT 180
Query: 256 GVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRL 315
G+L+AC GLV+EGRKYF I EEY LEPRIQH+GCMVDLFGKAG LEEAYE+I +M+L
Sbjct: 181 GILSACAQAGLVEEGRKYFNKI-EEYGLEPRIQHFGCMVDLFGKAGLLEEAYEIINSMKL 239
Query: 316 EPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAE 375
EPNV++W SFL++CK HKQF++AERV +Q LR VKPENDGGV+TLI +L+ +N+KW+ AE
Sbjct: 240 EPNVVLWSSFLSSCKVHKQFELAERVTEQVLRTVKPENDGGVYTLISNLFVLNDKWDDAE 299
Query: 376 RVRKLMLNQNVRKARGSSVISSLSV 400
RVRKLM+NQ VRKARGSS I S SV
Sbjct: 300 RVRKLMVNQKVRKARGSSFIRSGSV 324
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357511639|ref|XP_003626108.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|87240992|gb|ABD32850.1| Pentatricopeptide repeat [Medicago truncatula] gi|355501123|gb|AES82326.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 223/391 (57%), Positives = 297/391 (75%), Gaps = 4/391 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+QL+S+MHR VP D+F IL LKS T L +IHHLH+HI+KLGF SH +++T LL+
Sbjct: 22 IQLYSKMHRNGVPIDTFCILFTLKSSTR---LPIIHHLHAHIIKLGFTSHFHISTCLLNS 78
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
YV SF A LFDE+P+R+ VTWNTMI GYS+ +V +AR F+ MP R++ SW MI+
Sbjct: 79 YVFLSFLDACILFDEMPQRDTVTWNTMILGYSRLEDVKKARQLFDEMPHRDIVSWCNMIS 138
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
AYLN G+Y L LFR M+ EG+ PDQ+ VLSGC+H+ GLL GKS HG+IVKN
Sbjct: 139 AYLNVGSYMQSLYLFRRMLFVEGIKPDQVIACLVLSGCAHVERHGLLGGKSVHGYIVKNG 198
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
WELN +I LV+MYAK G L+ A MV ELM+ER+V SWT +ICG+ G++++AL +FE
Sbjct: 199 WELNVEIGAALVNMYAKGGVLRNAAMVLELMDERDVTSWTLMICGAVRCGFNKEALVVFE 258
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
MQ GVKPNE+TFTGVL+AC H G V++GR+YFKMI EE L+PR+QHY C+V L GK+
Sbjct: 259 KMQMDGVKPNELTFTGVLSACAHGGFVEDGRRYFKMI-EECGLKPRVQHYACLVYLIGKS 317
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G LEEAYE+I+ M++EP+V++ GSFL+ACKEHKQF++AE VI+Q LRM KPEN G+++L
Sbjct: 318 GMLEEAYEIIKMMKVEPDVVVLGSFLSACKEHKQFEIAEGVIEQVLRMAKPENYRGLYSL 377
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARG 391
I DLY + +K E AER++KL++ +++R+A+G
Sbjct: 378 IADLYVIGDKSEEAERMKKLIIKEHLRQAKG 408
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297738046|emb|CBI27247.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 354 bits (908), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 163/232 (70%), Positives = 194/232 (83%), Gaps = 1/232 (0%)
Query: 169 GKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAH 228
G S HGF KN WEL+ + T+LVDMYAKCGFLK A VF+LM+E+NV SWTALICGSA
Sbjct: 38 GGSIHGFTAKNGWELSVDLGTVLVDMYAKCGFLKSAFRVFDLMQEKNVASWTALICGSAQ 97
Query: 229 RGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQ 288
GY ++ALS+FE+MQ GVKPNEMTFTG+L+AC GLV+EGRKYF I EEY LEPRIQ
Sbjct: 98 HGYGKEALSMFELMQDMGVKPNEMTFTGILSACAQAGLVEEGRKYFNKI-EEYGLEPRIQ 156
Query: 289 HYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM 348
H+GCMVDLFGKAG LEEAYE+I +M+LEPNV++W SFL++CK HKQF++AERV +Q LR
Sbjct: 157 HFGCMVDLFGKAGLLEEAYEIINSMKLEPNVVLWSSFLSSCKVHKQFELAERVTEQVLRT 216
Query: 349 VKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISSLSV 400
VKPENDGGV+TLI +L+ +N+KW+ AERVRKLM+NQ VRKARGSS I S SV
Sbjct: 217 VKPENDGGVYTLISNLFVLNDKWDDAERVRKLMVNQKVRKARGSSFIRSGSV 268
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357125448|ref|XP_003564406.1| PREDICTED: pentatricopeptide repeat-containing protein At1g33350-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 333 bits (853), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 179/406 (44%), Positives = 254/406 (62%), Gaps = 12/406 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSI-----LHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVAT 55
+ L+S + + P+D S L LK + + L ++ H H+H+L+ +++ +VA+
Sbjct: 26 LHLYSLLRIRLRPTDPSSFAWRAALLALKPLSAASCLPLLSHFHAHLLRSNLLAYPHVAS 85
Query: 56 SLLHEYVVTSFGFARKLFDELPER--NAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVA 113
SLLH Y + S A +FD++P N V N M+ +S ++ AR FF+ +P ++V
Sbjct: 86 SLLHSYSLLSPSVAHHMFDQIPPATCNLVVVNVMLASVCRSSDLASARLFFDGIPDKDVV 145
Query: 114 SWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLL--MGKS 171
SWS M+ Y + G GL FR M L D +++ VL+GC+ S GLL +S
Sbjct: 146 SWSTMLGCYFSHGRLADGLAFFRAMTFTTQLAADYVSLVTVLTGCA---SAGLLPPFCRS 202
Query: 172 AHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGY 231
HG+ V+ N + T L+D Y K G L YA VF + R+V+ WTA+ICG A
Sbjct: 203 VHGYAVRRCVPANRHLGTSLIDCYGKAGRLDYASRVFARVPSRSVMHWTAMICGMAMHLR 262
Query: 232 SEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYG 291
S++A+ LFE M+ GV+PN+MTFT VL+AC H GLVD+GRK+FK++ E+YDLEP I HYG
Sbjct: 263 SDEAIRLFEKMRWQGVQPNKMTFTAVLSACGHAGLVDQGRKFFKLMFEKYDLEPTIHHYG 322
Query: 292 CMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKP 351
CMVD+F KAG LE+AY+VI+TMR+EPN+IIW S LAACK K FD+A +++ L M
Sbjct: 323 CMVDIFAKAGQLEDAYDVIKTMRVEPNIIIWTSLLAACKRFKNFDIAVEGLEKVLAMEIS 382
Query: 352 ENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISS 397
+ +GGV+TLI DLY M +W+ +VR+LM NVRK RGSS I +
Sbjct: 383 DENGGVYTLISDLYAMGGRWDDVMKVRRLMEEHNVRKKRGSSSIKA 428
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115440507|ref|NP_001044533.1| Os01g0800400 [Oryza sativa Japonica Group] gi|19570985|dbj|BAB86412.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza sativa Japonica Group] gi|20804737|dbj|BAB92423.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza sativa Japonica Group] gi|113534064|dbj|BAF06447.1| Os01g0800400 [Oryza sativa Japonica Group] gi|125572331|gb|EAZ13846.1| hypothetical protein OsJ_03770 [Oryza sativa Japonica Group] gi|215693327|dbj|BAG88709.1| unnamed protein product [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 328 bits (842), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 176/404 (43%), Positives = 246/404 (60%), Gaps = 12/404 (2%)
Query: 1 MQLFSQMHRQSVPSDSF-----SILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVAT 55
++L+S + + PSD + LK + +L ++ H H+H+++ +++ +VA+
Sbjct: 26 LRLYSLIRIHARPSDPALFAWRPAVLALKPLSAAASLPLLSHFHAHLIRSNLLAYPHVAS 85
Query: 56 SLLHEYVVTSFGFARKLFDELPER--NAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVA 113
SLL Y + S A LFD++P N V N M+ +S ++ AR FF+ +P ++V
Sbjct: 86 SLLRGYSLLSPEHAHHLFDQIPPSTCNLVVVNVMLGSLCRSSDLASARAFFDGIPDKDVV 145
Query: 114 SWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLL--MGKS 171
SWS M+A Y + GL FR M L D + + VL+GC+ S GLL ++
Sbjct: 146 SWSTMLACYFSHSRVAEGLAFFRTMTFTTQLAADYVMLVTVLTGCA---SAGLLPVSCRA 202
Query: 172 AHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGY 231
HG+IV+ + T L+D YAK G L YA VF + RNV+ WTA+ICGSA
Sbjct: 203 IHGYIVRRGITFTMHLGTALIDCYAKAGRLDYASRVFCRVPLRNVMHWTAMICGSAAHLG 262
Query: 232 SEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYG 291
SE A+ LFE M +GV+PNEMTFT VL+AC GLVD+GR++FK++ + Y EP I HYG
Sbjct: 263 SEKAIQLFEEMCRSGVQPNEMTFTAVLSACGQAGLVDQGRRFFKLMVDTYGFEPTIHHYG 322
Query: 292 CMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKP 351
C+VDL+ KAG LE+AYEVI+TMR+EPN+IIW S LAACK+ K F +A I++ L M
Sbjct: 323 CIVDLYAKAGKLEDAYEVIKTMRMEPNIIIWTSLLAACKKFKNFYIAVEGIEKVLSMEIS 382
Query: 352 ENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
E +GG++ LI DLY M +WE RVR LM +NV K RGSS I
Sbjct: 383 EENGGLYALISDLYAMGGQWEDVLRVRSLMEERNVWKIRGSSSI 426
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 325 bits (832), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 160/396 (40%), Positives = 244/396 (61%), Gaps = 6/396 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF ++ + D ++ +LK+C+ ++ +H ++ KLG S++++ ++H
Sbjct: 98 ISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHL 157
Query: 61 YVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y + G ARK+FD++P+R+ +TWN MI K G+ A F MP RNV SW++MI
Sbjct: 158 YALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMI 217
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
Y G + LF EM + GL P+++T+ AVL C+ +G+ L++G+ H F ++
Sbjct: 218 GGYAQCGKSKEAIDLFLEM-EDAGLLPNEVTVVAVLVACADMGN--LVLGRRIHDFSNRS 274
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+E N ++ L+DMY KCG L+ A +F+ MEER V+SW+A+I G A G +EDAL+LF
Sbjct: 275 GYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALF 334
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
M TGVKPN +TF G+L AC H G+V++GRKYF + +Y + PRI+HYGCMVDLF +
Sbjct: 335 NKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSR 394
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG L+EA+E I M + PN ++WG+ L CK HK +AE + L + P ND G +
Sbjct: 395 AGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNIKLAEEATRH-LSKLDPLND-GYYV 452
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++ ++Y +WE RVRKLM ++ V+K G S I
Sbjct: 453 VLSNIYAEAGRWEDVARVRKLMRDRGVKKTPGWSSI 488
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum] | Back alignment and taxonomy information |
|---|
Score = 323 bits (829), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 165/396 (41%), Positives = 245/396 (61%), Gaps = 7/396 (1%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
L+ +M S P ++++ +LK+C++ + +H+HI K G+ +Y SL++ Y
Sbjct: 97 LYHRMLCCSAPHNAYTFPFLLKACSNLSAFQETTQIHAHITKFGYGHDIYAVNSLINSYA 156
Query: 63 VT-SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVA-SWSAMIA 120
VT +F A LFD + E +AV+WN++IKGY K+G + A F +MP +N A SW+ MI+
Sbjct: 157 VTGNFKHAHLLFDRIQEPDAVSWNSVIKGYVKAGEMDMALTLFRKMPEKNNAISWTTMIS 216
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y+ AG L+LF EM N + PD +++ + LS CS LG+ L GK H + K
Sbjct: 217 GYVQAGMNKEALQLFHEM-QNSNVPPDNVSLASALSACSQLGA--LEQGKWIHSYANKTR 273
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
++ + +L+DMYAKCG ++ AL VF+ M+ ++V WTALI G A+ G +A+S F
Sbjct: 274 TRIDSVLCCVLIDMYAKCGEMEEALGVFKNMKTKSVQVWTALISGYAYHGLGREAISKFL 333
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
MQ GVKPN +TFT VLTAC +TGLV+EG+ F I+ +Y+L+P I+HYGCMVDL G+A
Sbjct: 334 EMQNMGVKPNAITFTAVLTACSYTGLVEEGKSVFNTIERDYNLKPTIEHYGCMVDLLGRA 393
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G L EA I+ M L+PN +IWGS L AC+ HK ++ E++ + + M N GG +
Sbjct: 394 GLLNEANRFIQKMPLKPNAVIWGSLLKACQIHKNIELGEKIGEILIEM--DSNHGGRYVH 451
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVIS 396
+ +++ M +KW+ A R+LM Q V K G S IS
Sbjct: 452 MANIHAMGKKWDKAAETRRLMREQGVVKVPGCSAIS 487
|
Source: Eutrema parvulum Species: Eutrema parvulum Genus: Eutrema Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 400 | ||||||
| TAIR|locus:2154855 | 620 | AT5G66520 "AT5G66520" [Arabido | 0.972 | 0.627 | 0.4 | 2.9e-80 | |
| TAIR|locus:2006927 | 538 | AT1G33350 [Arabidopsis thalian | 0.967 | 0.719 | 0.390 | 7.3e-75 | |
| TAIR|locus:2093920 | 687 | AT3G15930 "AT3G15930" [Arabido | 0.975 | 0.567 | 0.345 | 1.6e-72 | |
| TAIR|locus:2198678 | 500 | PDE247 "pigment defective 247" | 0.965 | 0.772 | 0.374 | 8.6e-72 | |
| TAIR|locus:2054789 | 534 | MEF21 "mitochondrial editing f | 0.975 | 0.730 | 0.355 | 7.7e-71 | |
| TAIR|locus:2126352 | 632 | AT4G37380 [Arabidopsis thalian | 0.96 | 0.607 | 0.366 | 2.6e-70 | |
| TAIR|locus:2159602 | 511 | AT5G08510 "AT5G08510" [Arabido | 0.937 | 0.733 | 0.356 | 5.5e-70 | |
| TAIR|locus:2055919 | 786 | AT2G22070 "AT2G22070" [Arabido | 0.972 | 0.494 | 0.374 | 1.8e-69 | |
| TAIR|locus:2161018 | 530 | AT5G56310 "AT5G56310" [Arabido | 0.94 | 0.709 | 0.364 | 2.4e-69 | |
| TAIR|locus:2144143 | 622 | AT5G06540 [Arabidopsis thalian | 0.967 | 0.622 | 0.353 | 5.6e-68 |
| TAIR|locus:2154855 AT5G66520 "AT5G66520" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 806 (288.8 bits), Expect = 2.9e-80, P = 2.9e-80
Identities = 158/395 (40%), Positives = 247/395 (62%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
L+ +M S P ++++ +LK+C++ + +H+ I KLG+ + VY SL++ Y
Sbjct: 102 LYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYA 161
Query: 63 VT-SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
VT +F A LFD +PE + V+WN++IKGY K+G + A F +M +N SW+ MI+
Sbjct: 162 VTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISG 221
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y+ A L+LF EM N + PD +++ LS C+ LG+ L GK H ++ K
Sbjct: 222 YVQADMNKEALQLFHEM-QNSDVEPDNVSLANALSACAQLGA--LEQGKWIHSYLNKTRI 278
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
++ + +L+DMYAKCG ++ AL VF+ +++++V +WTALI G A+ G+ +A+S F
Sbjct: 279 RMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFME 338
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
MQ G+KPN +TFT VLTAC +TGLV+EG+ F ++ +Y+L+P I+HYGC+VDL G+AG
Sbjct: 339 MQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAG 398
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
L+EA I+ M L+PN +IWG+ L AC+ HK ++ E I + L + P + GG +
Sbjct: 399 LLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEE-IGEILIAIDPYH-GGRYVHK 456
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVIS 396
+++ M++KW+ A R+LM Q V K G S IS
Sbjct: 457 ANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTIS 491
|
|
| TAIR|locus:2006927 AT1G33350 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 755 (270.8 bits), Expect = 7.3e-75, P = 7.3e-75
Identities = 156/399 (39%), Positives = 243/399 (60%)
Query: 4 FSQMHRQSVPSDSFSILH-ILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
F M +SVP + I +LKS + ++ +H+H+ K GF +V V T+LLH Y
Sbjct: 113 FRLMVNRSVPRPNHFIYPLVLKSTPYLSSAFSTPLVHTHLFKSGFHLYVVVQTALLHSYA 172
Query: 63 --VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
V+ AR+LFDE+ ERN V+W M+ GY++SG++ A FE MP R+V SW+A++A
Sbjct: 173 SSVSHITLARQLFDEMSERNVVSWTAMLSGYARSGDISNAVALFEDMPERDVPSWNAILA 232
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
A G + + LFR MI+ + P+++T+ VLS C+ G+ L + K H F + +
Sbjct: 233 ACTQNGLFLEAVSLFRRMINEPSIRPNEVTVVCVLSACAQTGT--LQLAKGIHAFAYRRD 290
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALI-CGSAHRGYSEDALSLF 239
+ ++ LVD+Y KCG L+ A VF++ ++++ +W ++I C + H G SE+A+++F
Sbjct: 291 LSSDVFVSNSLVDLYGKCGNLEEASSVFKMASKKSLTAWNSMINCFALH-GRSEEAIAVF 349
Query: 240 E-MMQAT--GVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDL 296
E MM+ +KP+ +TF G+L AC H GLV +GR YF ++ + +EPRI+HYGC++DL
Sbjct: 350 EEMMKLNINDIKPDHITFIGLLNACTHGGLVSKGRGYFDLMTNRFGIEPRIEHYGCLIDL 409
Query: 297 FGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGG 356
G+AG +EA EV+ TM+++ + IWGS L ACK H D+AE +K + + P N+GG
Sbjct: 410 LGRAGRFDEALEVMSTMKMKADEAIWGSLLNACKIHGHLDLAEVAVKNLVAL-NP-NNGG 467
Query: 357 VFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++ +LY WE A R RK++ +QN K G S I
Sbjct: 468 YVAMMANLYGEMGNWEEARRARKMIKHQNAYKPPGWSRI 506
|
|
| TAIR|locus:2093920 AT3G15930 "AT3G15930" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 733 (263.1 bits), Expect = 1.6e-72, P = 1.6e-72
Identities = 137/396 (34%), Positives = 247/396 (62%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++L +M R V S ++L +L +C+ + + +H ++ + + + +L++
Sbjct: 221 IELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNA 280
Query: 61 YVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y A ++F + R+ ++W +++KGY + GN+ AR +F++MP+R+ SW+ MI
Sbjct: 281 YAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMI 340
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
YL AG ++ L++FREM S G+ PD+ T+ +VL+ C+HLGS L +G+ +I KN
Sbjct: 341 DGYLRAGCFNESLEIFREMQS-AGMIPDEFTMVSVLTACAHLGS--LEIGEWIKTYIDKN 397
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+ + + + L+DMY KCG + A VF M++R+ +WTA++ G A+ G ++A+ +F
Sbjct: 398 KIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVF 457
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
MQ ++P+++T+ GVL+AC H+G+VD+ RK+F + ++ +EP + HYGCMVD+ G+
Sbjct: 458 FQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGR 517
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG ++EAYE++R M + PN I+WG+ L A + H MAE K+ L + +P+N G V+
Sbjct: 518 AGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILEL-EPDN-GAVYA 575
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+C++Y ++W+ VR+ +++ ++K G S+I
Sbjct: 576 LLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLI 611
|
|
| TAIR|locus:2198678 PDE247 "pigment defective 247" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 726 (260.6 bits), Expect = 8.6e-72, P = 8.6e-72
Identities = 149/398 (37%), Positives = 242/398 (60%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVI--HHLHSHILKLGFI-SHVYVATSLLHE 60
FS M V + + + +L C F + + LH + KLG +HV V T+++
Sbjct: 59 FSDMTLAGVEPNHITFIALLSGCGDFTSGSEALGDLLHGYACKLGLDRNHVMVGTAIIGM 118
Query: 61 YVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y F AR +FD + ++N+VTWNTMI GY +SG V A F++MP R++ SW+AMI
Sbjct: 119 YSKRGRFKKARLVFDYMEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMI 178
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
++ G + L FREM G+ PD + I A L+ C++LG+ L G H +++
Sbjct: 179 NGFVKKGYQEEALLWFREM-QISGVKPDYVAIIAALNACTNLGA--LSFGLWVHRYVLSQ 235
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+++ N +++ L+D+Y +CG +++A VF ME+R V+SW ++I G A G + ++L F
Sbjct: 236 DFKNNVRVSNSLIDLYCRCGCVEFARQVFYNMEKRTVVSWNSVIVGFAANGNAHESLVYF 295
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
MQ G KP+ +TFTG LTAC H GLV+EG +YF+++ +Y + PRI+HYGC+VDL+ +
Sbjct: 296 RKMQEKGFKPDAVTFTGALTACSHVGLVEEGLRYFQIMKCDYRISPRIEHYGCLVDLYSR 355
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH-KQFDMAERVIKQALRM-VKPENDGGV 357
AG LE+A +++++M ++PN ++ GS LAAC H +AER++K + VK ++
Sbjct: 356 AGRLEDALKLVQSMPMKPNEVVIGSLLAACSNHGNNIVLAERLMKHLTDLNVKSHSN--- 412
Query: 358 FTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++ ++Y + KWEGA ++R+ M ++K G S I
Sbjct: 413 YVILSNMYAADGKWEGASKMRRKMKGLGLKKQPGFSSI 450
|
|
| TAIR|locus:2054789 MEF21 "mitochondrial editing factor 21" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 717 (257.5 bits), Expect = 7.7e-71, P = 7.7e-71
Identities = 141/397 (35%), Positives = 236/397 (59%)
Query: 1 MQLFSQMHRQSVP-SDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
++++ Q+ R+S D F+ + KSC + + +H H+ K G HV +L+
Sbjct: 93 IRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRFHVVTENALID 152
Query: 60 EYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
Y+ A K+FDE+ ER+ ++WN+++ GY++ G + +A+ F M + + SW+AM
Sbjct: 153 MYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAM 212
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
I+ Y G Y + FREM G+ PD++++ +VL C+ LGS+ L GK H + +
Sbjct: 213 ISGYTGIGCYVEAMDFFREM-QLAGIEPDEISLISVLPSCAQLGSLEL--GKWIHLYAER 269
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
+ + L++MY+KCG + A+ +F ME ++VISW+ +I G A+ G + A+
Sbjct: 270 RGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIET 329
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
F MQ VKPN +TF G+L+AC H G+ EG +YF M+ ++Y +EP+I+HYGC++D+
Sbjct: 330 FNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLRYFDMMRQDYQIEPKIEHYGCLIDVLA 389
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358
+AG LE A E+ +TM ++P+ IWGS L++C+ D+A V L ++PE D G +
Sbjct: 390 RAGKLERAVEITKTMPMKPDSKIWGSLLSSCRTPGNLDVA-LVAMDHLVELEPE-DMGNY 447
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++Y KWE R+RK++ N+N++K G S+I
Sbjct: 448 VLLANIYADLGKWEDVSRLRKMIRNENMKKTPGGSLI 484
|
|
| TAIR|locus:2126352 AT4G37380 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
Identities = 145/396 (36%), Positives = 235/396 (59%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
L+ Q+ + + F+ +LKSC+ + + H+H+LK G YVAT L+ Y
Sbjct: 117 LYVQLLSSEINPNEFTFSSLLKSCSTKSGKLI----HTHVLKFGLGIDPYVATGLVDVYA 172
Query: 63 VTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
A+K+FD +PER+ V+ MI Y+K GNV AR F+ M R++ SW+ MI
Sbjct: 173 KGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDG 232
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y G + L LF+++++ PD++T+ A LS CS +G+ L G+ H F+ +
Sbjct: 233 YAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGA--LETGRWIHVFVKSSRI 290
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
LN ++ T L+DMY+KCG L+ A++VF +++++W A+I G A GYS+DAL LF
Sbjct: 291 RLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNE 350
Query: 242 MQA-TGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
MQ TG++P ++TF G L AC H GLV+EG + F+ + +EY ++P+I+HYGC+V L G+A
Sbjct: 351 MQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRA 410
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM-VKPENDGGVFT 359
G L+ AYE I+ M ++ + ++W S L +CK H F + + + + + + +K + G++
Sbjct: 411 GQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIK---NSGIYV 467
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++Y +EG +VR LM + + K G S I
Sbjct: 468 LLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTI 503
|
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| TAIR|locus:2159602 AT5G08510 "AT5G08510" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 709 (254.6 bits), Expect = 5.5e-70, P = 5.5e-70
Identities = 136/381 (35%), Positives = 230/381 (60%)
Query: 22 ILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLFDELPERN 80
I + F++ + LHS + GF S + T+L+ Y + + AR++FDE+ +R+
Sbjct: 88 IFAASASFSSARPLRLLHSQFFRSGFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRD 147
Query: 81 AVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMIS 140
WN MI GY + G++ A + F+ MP +NV SW+ +I+ + G Y LK+F M
Sbjct: 148 VPVWNAMITGYQRRGDMKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEK 207
Query: 141 NEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGF 200
++ + P+ +T+ +VL C++LG L +G+ G+ +N + N + ++MY+KCG
Sbjct: 208 DKSVKPNHITVVSVLPACANLGE--LEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGM 265
Query: 201 LKYALMVFE-LMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLT 259
+ A +FE L +RN+ SW ++I A G ++AL+LF M G KP+ +TF G+L
Sbjct: 266 IDVAKRLFEELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLL 325
Query: 260 ACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNV 319
ACVH G+V +G++ FK ++E + + P+++HYGCM+DL G+ G L+EAY++I+TM ++P+
Sbjct: 326 ACVHGGMVVKGQELFKSMEEVHKISPKLEHYGCMIDLLGRVGKLQEAYDLIKTMPMKPDA 385
Query: 320 IIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRK 379
++WG+ L AC H ++AE + +AL ++P N G ++ ++Y NEKW+G R+RK
Sbjct: 386 VVWGTLLGACSFHGNVEIAE-IASEALFKLEPTNPGNC-VIMSNIYAANEKWDGVLRMRK 443
Query: 380 LMLNQNVRKARGSSVISSLSV 400
LM + + KA G S + V
Sbjct: 444 LMKKETMTKAAGYSYFVEVGV 464
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| TAIR|locus:2055919 AT2G22070 "AT2G22070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 704 (252.9 bits), Expect = 1.8e-69, P = 1.8e-69
Identities = 150/401 (37%), Positives = 239/401 (59%)
Query: 1 MQLFSQMHRQSVPS-DSFSILHILKSCTHFNNLTVIHHLHSHILKLGF-ISHVYVATSLL 58
+ +FS+M R S+ S D F++ +L +C + L + +HSHI+ GF IS + V +L+
Sbjct: 263 LDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGI-VLNALI 321
Query: 59 HEYV-VTSFGFARKLFDELPERNAVT--WNTMIKGYSKSGNVCEARDFFERMPLRNVASW 115
Y AR+L ++ ++ + ++ GY K G++ +A++ F + R+V +W
Sbjct: 322 SMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAW 381
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF 175
+AMI Y G+Y + LFR M+ G P+ T+ A+LS S L S L GK HG
Sbjct: 382 TAMIVGYEQHGSYGEAINLFRSMVGG-GQRPNSYTLAAMLSVASSLAS--LSHGKQIHGS 438
Query: 176 IVKNEWELNEQIATILVDMYAKCGFLKYALMVFELME-ERNVISWTALICGSAHRGYSED 234
VK+ + ++ L+ MYAK G + A F+L+ ER+ +SWT++I A G++E+
Sbjct: 439 AVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEE 498
Query: 235 ALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMV 294
AL LFE M G++P+ +T+ GV +AC H GLV++GR+YF M+ + + P + HY CMV
Sbjct: 499 ALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMV 558
Query: 295 DLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEND 354
DLFG+AG L+EA E I M +EP+V+ WGS L+AC+ HK D+ +V + L +++PEN
Sbjct: 559 DLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLG-KVAAERLLLLEPENS 617
Query: 355 GGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
G ++ + +LY+ KWE A ++RK M + V+K +G S I
Sbjct: 618 GA-YSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWI 657
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| TAIR|locus:2161018 AT5G56310 "AT5G56310" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 703 (252.5 bits), Expect = 2.4e-69, P = 2.4e-69
Identities = 140/384 (36%), Positives = 223/384 (58%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTS-FGFARKLF 73
D+F+ +LK +++ +H ++ GF S V+V T L+ Y G ARK+F
Sbjct: 115 DTFTFPFVLKIAVRVSDVWFGRQIHGQVVVFGFDSSVHVVTGLIQMYFSCGGLGDARKMF 174
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMP--LRNVASWSAMIAAYLNAGAYDPG 131
DE+ ++ WN ++ GY K G + EAR E MP +RN SW+ +I+ Y +G
Sbjct: 175 DEMLVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASEA 234
Query: 132 LKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATIL 191
+++F+ M+ E + PD++T+ AVLS C+ LGS+ L G+ ++ + +
Sbjct: 235 IEVFQRMLM-ENVEPDEVTLLAVLSACADLGSLEL--GERICSYVDHRGMNRAVSLNNAV 291
Query: 192 VDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNE 251
+DMYAK G + AL VFE + ERNV++WT +I G A G+ +AL++F M GV+PN+
Sbjct: 292 IDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPND 351
Query: 252 MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIR 311
+TF +L+AC H G VD G++ F + +Y + P I+HYGCM+DL G+AG L EA EVI+
Sbjct: 352 VTFIAILSACSHVGWVDLGKRLFNSMRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIK 411
Query: 312 TMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKW 371
+M + N IWGS LAA H ++ ER + + +++ +P N G + L+ +LY+ +W
Sbjct: 412 SMPFKANAAIWGSLLAASNVHHDLELGERALSELIKL-EPNNSGN-YMLLANLYSNLGRW 469
Query: 372 EGAERVRKLMLNQNVRKARGSSVI 395
+ + +R +M V+K G S I
Sbjct: 470 DESRMMRNMMKGIGVKKMAGESSI 493
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| TAIR|locus:2144143 AT5G06540 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 690 (248.0 bits), Expect = 5.6e-68, P = 5.6e-68
Identities = 139/393 (35%), Positives = 238/393 (60%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVV 63
++QM + + D+ + ++K+ + + V HS I++ GF + VYV SL+H Y
Sbjct: 105 YTQMLKSRIWPDNITFPFLIKASSEMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYAN 164
Query: 64 TSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
F A ++F ++ R+ V+W +M+ GY K G V AR+ F+ MP RN+ +WS MI Y
Sbjct: 165 CGFIAAAGRIFGQMGFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGY 224
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182
++ + LF E + EG+ ++ + +V+S C+HLG+ L G+ A+ ++VK+
Sbjct: 225 AKNNCFEKAIDLF-EFMKREGVVANETVMVSVISSCAHLGA--LEFGERAYEYVVKSHMT 281
Query: 183 LNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMM 242
+N + T LVDM+ +CG ++ A+ VFE + E + +SW+++I G A G++ A+ F M
Sbjct: 282 VNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQM 341
Query: 243 QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF 302
+ G P ++TFT VL+AC H GLV++G + ++ + +++ +EPR++HYGC+VD+ G+AG
Sbjct: 342 ISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGK 401
Query: 303 LEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLIC 362
L EA I M ++PN I G+ L ACK +K ++AERV ++ VKPE+ G + L+
Sbjct: 402 LAEAENFILKMHVKPNAPILGALLGACKIYKNTEVAERVGNMLIK-VKPEHSG-YYVLLS 459
Query: 363 DLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++Y +W+ E +R +M + V+K G S+I
Sbjct: 460 NIYACAGQWDKIESLRDMMKEKLVKKPPGWSLI 492
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00030083001 | SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (486 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 400 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-68 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 6e-63 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-45 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-34 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-31 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-16 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-16 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-09 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-08 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 8e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 9e-06 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 5e-04 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.003 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 232 bits (592), Expect = 1e-68
Identities = 119/382 (31%), Positives = 197/382 (51%), Gaps = 39/382 (10%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++ ++ M + +V D +I +L +C +L V LH + G IS+V VA
Sbjct: 374 LETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVA------ 427
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
N +I+ YSK + +A + F +P ++V SW+++IA
Sbjct: 428 ------------------------NALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIA 463
Query: 121 AY-LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
LN ++ L FR+M+ L P+ +T+ A LS C+ +G+ L+ GK H +++
Sbjct: 464 GLRLNNRCFE-ALIFFRQMLLT--LKPNSVTLIAALSACARIGA--LMCGKEIHAHVLRT 518
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+ + L+D+Y +CG + YA F E++V+SW L+ G G A+ LF
Sbjct: 519 GIGFDGFLPNALLDLYVRCGRMNYAWNQFNS-HEKDVVSWNILLTGYVAHGKGSMAVELF 577
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
M +GV P+E+TF +L AC +G+V +G +YF ++E+Y + P ++HY C+VDL G+
Sbjct: 578 NRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGR 637
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG L EAY I M + P+ +WG+ L AC+ H+ ++ E + + N G +
Sbjct: 638 AGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDP--NSVGYYI 695
Query: 360 LICDLYTMNEKWEGAERVRKLM 381
L+C+LY KW+ RVRK M
Sbjct: 696 LLCNLYADAGKWDEVARVRKTM 717
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 213 bits (545), Expect = 6e-63
Identities = 112/377 (29%), Positives = 187/377 (49%), Gaps = 35/377 (9%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
LF +M ++ + + +L++ + LH +LK G + +V+ +L
Sbjct: 209 FALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCAL--- 265
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
I YSK G++ +AR F+ MP + +W++M+A
Sbjct: 266 ---------------------------IDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLA 298
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y G + L L+ EM + G++ DQ T ++ S L L K AH +++
Sbjct: 299 GYALHGYSEEALCLYYEM-RDSGVSIDQFTFSIMIRIFSRLAL--LEHAKQAHAGLIRTG 355
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
+ L+ T LVD+Y+K G ++ A VF+ M +N+ISW ALI G + G A+ +FE
Sbjct: 356 FPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFE 415
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M A GV PN +TF VL+AC ++GL ++G + F+ + E + ++PR HY CM++L G+
Sbjct: 416 RMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGRE 475
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G L+EAY +IR +P V +W + L AC+ HK ++ ++ M PE L
Sbjct: 476 GLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM-GPEKLNNYVVL 534
Query: 361 ICDLYTMNEKWEGAERV 377
+ +LY + + A +V
Sbjct: 535 L-NLYNSSGRQAEAAKV 550
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 166 bits (423), Expect = 2e-45
Identities = 103/356 (28%), Positives = 169/356 (47%), Gaps = 45/356 (12%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ L+ +M V D ++ +L++C +L +H+H+++ GF V V +L+
Sbjct: 172 LCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALI-- 229
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
TM Y K G+V AR F+RMP R+ SW+AMI+
Sbjct: 230 -------------------------TM---YVKCGDVVSARLVFDRMPRRDCISWNAMIS 261
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y G GL+LF M + PD MTI +V+S C LG L G+ HG++VK
Sbjct: 262 GYFENGECLEGLELFFTMRELS-VDPDLMTITSVISACELLGDERL--GREMHGYVVKTG 318
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
+ ++ + L+ MY G A VF ME ++ +SWTA+I G G + AL +
Sbjct: 319 FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYA 378
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHY----GCMVDL 296
+M+ V P+E+T VL+AC G +D G K ++ + + + Y ++++
Sbjct: 379 LMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERK-----GLISYVVVANALIEM 433
Query: 297 FGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA-CKEHKQFDMAERVIKQALRMVKP 351
+ K +++A EV + E +VI W S +A ++ F+ A +Q L +KP
Sbjct: 434 YSKCKCIDKALEVFHNIP-EKDVISWTSIIAGLRLNNRCFE-ALIFFRQMLLTLKP 487
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 2e-34
Identities = 81/265 (30%), Positives = 139/265 (52%), Gaps = 11/265 (4%)
Query: 83 TWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNE 142
N ++ + K G + +AR F+ MP RN+ASW +I ++AG Y LFREM +
Sbjct: 160 MMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWE-D 218
Query: 143 GLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLK 202
G + T +L + LGS G+ H ++K + ++ L+DMY+KCG ++
Sbjct: 219 GSDAEPRTFVVMLRASAGLGSA--RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIE 276
Query: 203 YALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACV 262
A VF+ M E+ ++W +++ G A GYSE+AL L+ M+ +GV ++ TF+ ++
Sbjct: 277 DARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFS 336
Query: 263 HTGLVDEGRK-YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVII 321
L++ ++ + +I + L+ I +VDL+ K G +E+A V M + N+I
Sbjct: 337 RLALLEHAKQAHAGLIRTGFPLD--IVANTALVDLYSKWGRMEDARNVFDRMPRK-NLIS 393
Query: 322 WGSFLAACKEH----KQFDMAERVI 342
W + +A H K +M ER+I
Sbjct: 394 WNALIAGYGNHGRGTKAVEMFERMI 418
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 1e-31
Identities = 82/301 (27%), Positives = 128/301 (42%), Gaps = 46/301 (15%)
Query: 85 NTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGL 144
N M+ + + G + A F +MP R++ SW+ ++ Y AG +D L L+ M+ G+
Sbjct: 125 NAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLW-AGV 183
Query: 145 TPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYA 204
PD T VL C G L G+ H +V+ +EL+ + L+ MY KCG + A
Sbjct: 184 RPDVYTFPCVLRTCG--GIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSA 241
Query: 205 LMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTAC--- 261
+VF+ M R+ ISW A+I G G + L LF M+ V P+ MT T V++AC
Sbjct: 242 RLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELL 301
Query: 262 -------------VHTGLV-------------------DEGRKYFKMIDEEYDLEPRIQH 289
V TG E K F ++ +
Sbjct: 302 GDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK-----DAVS 356
Query: 290 YGCMVDLFGKAGFLEEAYEVIRTMRLE---PNVIIWGSFLAACKEHKQFDMAERVIKQAL 346
+ M+ + K G ++A E M + P+ I S L+AC D+ ++ + A
Sbjct: 357 WTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAE 416
Query: 347 R 347
R
Sbjct: 417 R 417
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 80.3 bits (198), Expect = 3e-16
Identities = 62/259 (23%), Positives = 106/259 (40%), Gaps = 29/259 (11%)
Query: 113 ASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSA 172
S + I + G + L+LF + + T T A++ C L S+ + K+
Sbjct: 88 VSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCV--KAV 145
Query: 173 HGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYS 232
+ + + +E ++ + ++ M+ KCG L A +F+ M ERN+ SW +I G G
Sbjct: 146 YWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNY 205
Query: 233 EDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKY------FKMIDEEYDLEPR 286
+A +LF M G TF +L A G G++ ++ + +
Sbjct: 206 REAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTF----- 260
Query: 287 IQHYGC-MVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQA 345
C ++D++ K G +E+A V M E + W S LA H + +A
Sbjct: 261 ---VSCALIDMYSKCGDIEDARCVFDGMP-EKTTVAWNSMLAGYALHGYSE-------EA 309
Query: 346 LRMVKPENDGGV----FTL 360
L + D GV FT
Sbjct: 310 LCLYYEMRDSGVSIDQFTF 328
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 80.3 bits (198), Expect = 4e-16
Identities = 64/283 (22%), Positives = 135/283 (47%), Gaps = 19/283 (6%)
Query: 78 ERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVAS----WSAMIAAYLNAGAYDPGLK 133
E N T+ +I G +++G V +A + M +NV ++A+I+A +GA D
Sbjct: 504 EANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFD 563
Query: 134 LFREMISN-EGLTPDQMTIGAVLSGCSHLGSVG--LLMGKSAHGFIVKNEWELNEQIATI 190
+ EM + + PD +T+GA++ C++ G V + + H + +K E + TI
Sbjct: 564 VLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPE----VYTI 619
Query: 191 LVDMYAKCGFLKYALMVFELMEERNV----ISWTALICGSAHRGYSEDALSLFEMMQATG 246
V+ ++ G +AL +++ M+++ V + ++AL+ + H G + A + + + G
Sbjct: 620 AVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG 679
Query: 247 VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA 306
+K ++++ ++ AC + + + ++ I + L P + ++ + L +A
Sbjct: 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDI-KSIKLRPTVSTMNALITALCEGNQLPKA 738
Query: 307 YEVIRTMR---LEPNVIIWGSFLAACKEHKQFDMAERVIKQAL 346
EV+ M+ L PN I + L A + D+ ++ QA
Sbjct: 739 LEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAK 781
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 1e-09
Identities = 45/194 (23%), Positives = 83/194 (42%), Gaps = 9/194 (4%)
Query: 169 GKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAH 228
G + + L ++ ++ M+ + G L +A VF M ER++ SW L+ G A
Sbjct: 105 GSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAK 164
Query: 229 RGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVD--EGRKYFKMIDEEYDLEPR 286
GY ++AL L+ M GV+P+ TF VL C G+ D GR+ + + E
Sbjct: 165 AGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTC--GGIPDLARGREVHAHV-VRFGFELD 221
Query: 287 IQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQAL 346
+ ++ ++ K G + A V M + I W + ++ + + ++
Sbjct: 222 VDVVNALITMYVKCGDVVSARLVFDRMPRR-DCISWNAMISG---YFENGECLEGLELFF 277
Query: 347 RMVKPENDGGVFTL 360
M + D + T+
Sbjct: 278 TMRELSVDPDLMTI 291
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 58.0 bits (140), Expect = 5e-09
Identities = 60/289 (20%), Positives = 120/289 (41%), Gaps = 46/289 (15%)
Query: 93 KSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIG 152
K V EA F + + +++++ +++ ++ D L++ R ++ GL D
Sbjct: 418 KQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLR-LVQEAGLKADCKLYT 476
Query: 153 AVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELME 212
++S C+ G V M + H +V E N L+D A+ G + A + +M
Sbjct: 477 TLISTCAKSGKVDA-MFEVFHE-MVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMR 534
Query: 213 ERNV----ISWTALICGSAHRGYSEDALSLFEMMQA--TGVKPNEMTFTGVLTACVHTGL 266
+NV + + ALI G + A + M+A + P+ +T ++ AC + G
Sbjct: 535 SKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ 594
Query: 267 VDEGRKYFKMIDE----------------------------------EYDLEPRIQHYGC 292
VD ++ ++MI E + ++P +
Sbjct: 595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSA 654
Query: 293 MVDLFGKAGFLEEAYEVIRTMR---LEPNVIIWGSFLAACKEHKQFDMA 338
+VD+ G AG L++A+E+++ R ++ + + S + AC K + A
Sbjct: 655 LVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKA 703
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 9e-09
Identities = 16/49 (32%), Positives = 28/49 (57%)
Query: 215 NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVH 263
+V+++ LI G +G E+AL LF M+ G+KPN T++ ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 6e-08
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 80 NAVTWNTMIKGYSKSGNVCEARDFFERMPLR----NVASWSAMIAAY 122
+ VT+NT+I GY K G V EA F M R NV ++S +I
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 8e-06
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 82 VTWNTMIKGYSKSGNVCEARDFFERMPLRNV 112
VT+N++I GY K+G + EA + F+ M + V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 9e-06
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 78 ERNAVTWNTMIKGYSKSGNVCEARDFFERMP 108
+ + VT+NT+I G ++G V EA + + M
Sbjct: 4 KPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 5e-04
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 216 VISWTALICGSAHRGYSEDALSLFEMMQATGVKP 249
+ ++ AL+ A G + AL++ E M+A+G+KP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 6e-04
Identities = 50/245 (20%), Positives = 99/245 (40%), Gaps = 29/245 (11%)
Query: 73 FDELPERNA---------VTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYL 123
FD L E A +T ++K + +G V A++ ++ + N+ + +
Sbjct: 562 FDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAV 621
Query: 124 NA----GAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
N+ G +D L ++ +M +G+ PD++ A++ H G + I+++
Sbjct: 622 NSCSQKGDWDFALSIYDDM-KKKGVKPDEVFFSALVDVAGHAGDLDKAFE------ILQD 674
Query: 180 EWELNEQIATILVD--MYAKC--GFLKYALMVFE---LMEERNVIS-WTALICGSAHRGY 231
+ ++ T+ M A K AL ++E ++ R +S ALI
Sbjct: 675 ARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQ 734
Query: 232 SEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYG 291
AL + M+ G+ PN +T++ +L A D G E+ ++P +
Sbjct: 735 LPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCR 793
Query: 292 CMVDL 296
C+ L
Sbjct: 794 CITGL 798
|
Length = 1060 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.001
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 217 ISWTALICGSAHRGYSEDALSLFEMMQATGVKPNE 251
+++ LI G G E+AL LF+ M+ G++P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.002
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 82 VTWNTMIKGYSKSGNVCEARDFFERMPLRNV 112
VT+NT+I G K+G V EA + F+ M R +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGI 31
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 34.5 bits (80), Expect = 0.003
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 81 AVTWNTMIKGYSKSGNVCEARDFFERMPLRNVA 113
T+N ++ +K+G+ A E M +
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLK 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 400 | |||
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.96 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.95 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.92 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.91 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.91 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.9 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.9 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.88 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.87 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.87 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.86 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.85 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.83 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.81 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.81 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.79 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.77 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.76 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.72 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.7 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.66 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.66 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.65 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.65 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.65 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.65 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.64 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.63 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.63 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.63 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.62 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.62 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.61 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.61 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.61 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.6 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.6 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.6 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.56 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.54 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.53 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.52 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.52 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.51 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.5 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.49 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.47 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.46 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.41 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.41 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.39 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.37 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.35 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.35 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.32 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.31 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.29 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.29 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.28 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.24 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.24 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.23 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.22 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.21 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.2 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.2 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.2 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.18 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.17 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.16 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.15 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.14 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.12 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.09 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.09 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.05 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.05 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.05 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.03 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.01 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.99 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.99 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.96 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.94 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.92 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.87 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.86 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.85 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.84 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.82 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.82 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.81 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.8 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.76 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.76 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.75 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.75 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.73 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.72 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.72 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.72 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.72 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.72 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.7 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.68 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.67 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.67 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.66 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.66 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.64 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.63 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.61 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.56 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.54 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.53 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.51 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.51 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.5 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.49 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.46 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.43 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.42 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.41 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.39 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.38 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.34 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.34 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.33 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.31 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.31 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.3 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.29 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.26 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.25 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.24 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.22 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.2 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.19 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.19 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.19 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.19 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 98.18 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.13 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.09 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.09 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.04 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.0 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.98 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.95 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.95 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.93 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.93 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.92 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.91 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.89 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.89 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.86 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.85 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.85 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.84 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.83 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.83 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.83 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.82 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.8 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.8 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.77 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.76 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.75 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.74 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.73 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.73 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.73 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.73 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.68 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.68 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.63 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.63 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.58 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.57 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.54 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.54 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.53 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.53 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.51 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.5 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.5 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.5 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.48 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.46 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.45 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.38 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.35 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.35 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.33 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.33 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.29 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.28 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.25 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.22 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.18 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.18 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.17 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.15 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.14 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.14 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.06 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.05 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.04 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.02 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.99 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.98 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.97 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.93 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.83 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.75 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.73 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.7 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.66 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.62 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.61 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.6 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 96.55 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.53 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 96.47 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 96.4 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.36 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.29 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.16 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.15 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.15 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.1 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.07 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.97 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.87 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.82 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.81 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.8 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.79 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.77 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.77 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.76 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.68 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.57 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.42 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.36 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.36 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.32 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.32 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.31 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.3 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.24 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.23 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.11 | |
| PRK09687 | 280 | putative lyase; Provisional | 95.06 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.05 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.04 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 94.99 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.97 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 94.91 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.83 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 94.79 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.77 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 94.71 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.48 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 94.45 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 94.14 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.11 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 94.1 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.1 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 94.06 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.96 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.92 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.91 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.89 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.83 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.81 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 93.71 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.59 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.56 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 93.24 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.06 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 92.94 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 92.74 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 92.63 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 92.11 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.95 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 91.89 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 91.77 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 91.76 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.57 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 91.52 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 91.51 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 91.5 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 91.48 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 91.09 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 90.95 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 90.87 | |
| KOG0687 | 393 | consensus 26S proteasome regulatory complex, subun | 90.84 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 90.83 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 90.75 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 90.61 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 90.5 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 90.47 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 90.39 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 90.13 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 89.75 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 89.7 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 89.56 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 89.32 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 89.28 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 89.13 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 88.77 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 88.52 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 87.95 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 87.85 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 87.82 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 87.63 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 87.44 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 87.19 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 87.07 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 86.9 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 86.75 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 86.56 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 86.5 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 86.46 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 86.34 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 86.14 | |
| PF08311 | 126 | Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro | 85.51 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 85.49 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 84.91 | |
| COG5187 | 412 | RPN7 26S proteasome regulatory complex component, | 84.8 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 84.74 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 84.59 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 84.39 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 84.35 | |
| PF14669 | 233 | Asp_Glu_race_2: Putative aspartate racemase | 84.02 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 83.58 | |
| cd08819 | 88 | CARD_MDA5_2 Caspase activation and recruitment dom | 83.52 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 83.11 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 82.78 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 81.95 | |
| PRK09687 | 280 | putative lyase; Provisional | 81.47 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 81.24 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 81.03 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 80.57 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 80.52 |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-65 Score=486.05 Aligned_cols=393 Identities=30% Similarity=0.558 Sum_probs=349.7
Q ss_pred HhhHHHHhC-CCCCCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCCC
Q 048364 2 QLFSQMHRQ-SVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPER 79 (400)
Q Consensus 2 ~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~ 79 (400)
++|+.|... ++.||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+.++..| +.|+++.|.++|++|++|
T Consensus 108 ~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~ 187 (697)
T PLN03081 108 ELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER 187 (697)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCC
Confidence 466677654 366777777777777777777777777777777777777777777777777 777777777777766666
Q ss_pred ChhhHHHHHHHHHcC-----------------------------------------------------------------
Q 048364 80 NAVTWNTMIKGYSKS----------------------------------------------------------------- 94 (400)
Q Consensus 80 ~~~~~~~l~~~~~~~----------------------------------------------------------------- 94 (400)
|..+||+++.+|++.
T Consensus 188 ~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~ 267 (697)
T PLN03081 188 NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALID 267 (697)
T ss_pred CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHH
Confidence 555555555555554
Q ss_pred -----CChHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhh
Q 048364 95 -----GNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMG 169 (400)
Q Consensus 95 -----~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a 169 (400)
|++++|.++|++|..+|+.+||+|+.+|++.|++++|+++|++|. ..|+.||..||+.++.+|++.|+++. +
T Consensus 268 ~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~-~~g~~pd~~t~~~ll~a~~~~g~~~~--a 344 (697)
T PLN03081 268 MYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMR-DSGVSIDQFTFSIMIRIFSRLALLEH--A 344 (697)
T ss_pred HHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhccchHH--H
Confidence 455555555555566788899999999999999999999999998 88999999999999999999999999 9
Q ss_pred hhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCC
Q 048364 170 KSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKP 249 (400)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 249 (400)
.+++..+.+.|+.|+..+++.|+++|++.|++++|.++|++|.++|..+||+||.+|++.|+.++|.++|++|.+.|+.|
T Consensus 345 ~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~P 424 (697)
T PLN03081 345 KQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP 424 (697)
T ss_pred HHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhccCCccHHHHHHHHHHH
Q 048364 250 NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAAC 329 (400)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~~~~~~~l~~~~ 329 (400)
|..||+.++.+|++.|..++|.++|+.|.+++|+.|+..+|+.++++|++.|++++|.+++++|++.|+..+|++++.+|
T Consensus 425 d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~ 504 (697)
T PLN03081 425 NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTAC 504 (697)
T ss_pred CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999778999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhccccccccCccccccCC
Q 048364 330 KEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISSLS 399 (400)
Q Consensus 330 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~ 399 (400)
...|+++.|..+++++.+.. | .+..+|..|+.+|.+.|++++|.++++.|.+.|+++.|++|||++++
T Consensus 505 ~~~g~~~~a~~~~~~l~~~~-p-~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~ 572 (697)
T PLN03081 505 RIHKNLELGRLAAEKLYGMG-P-EKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKK 572 (697)
T ss_pred HHcCCcHHHHHHHHHHhCCC-C-CCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECC
Confidence 99999999999999999888 7 77899999999999999999999999999999999999999999875
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-62 Score=477.30 Aligned_cols=392 Identities=33% Similarity=0.673 Sum_probs=363.0
Q ss_pred CHhhHHHHhCCCCCCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCCC
Q 048364 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPER 79 (400)
Q Consensus 1 l~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~ 79 (400)
+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..+|+.++.+| +.|++++|.++|++|..|
T Consensus 273 l~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~ 352 (857)
T PLN03077 273 LELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK 352 (857)
T ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCC
Confidence 3689999999999999999999999999999999999999999999999999999999999 999999999999999888
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHHhhC----------------------------------------------------
Q 048364 80 NAVTWNTMIKGYSKSGNVCEARDFFERM---------------------------------------------------- 107 (400)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~---------------------------------------------------- 107 (400)
|..+||++|.+|++.|++++|+++|++|
T Consensus 353 d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~ 432 (857)
T PLN03077 353 DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIE 432 (857)
T ss_pred CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 8777777777777777777776666655
Q ss_pred ------------------CCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhh
Q 048364 108 ------------------PLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMG 169 (400)
Q Consensus 108 ------------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a 169 (400)
.++|..+|+.++.+|++.|+.++|+++|++|. . ++.||..||+.++.+|++.|+.+. +
T Consensus 433 ~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~-~-~~~pd~~t~~~lL~a~~~~g~l~~--~ 508 (857)
T PLN03077 433 MYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML-L-TLKPNSVTLIAALSACARIGALMC--G 508 (857)
T ss_pred HHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHH-h-CCCCCHhHHHHHHHHHhhhchHHH--h
Confidence 34555566666666666666666777777775 3 589999999999999999999999 9
Q ss_pred hhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCC
Q 048364 170 KSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKP 249 (400)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 249 (400)
.+++..+.+.|+.++..++++|+++|+++|++++|.++|+.+ .+|..+||++|.+|++.|+.++|+++|++|.+.|+.|
T Consensus 509 ~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P 587 (857)
T PLN03077 509 KEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP 587 (857)
T ss_pred HHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999999999 8999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhccCCccHHHHHHHHHHH
Q 048364 250 NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAAC 329 (400)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~~~~~~~l~~~~ 329 (400)
|..||+.++.+|++.|++++|.++|+.|.+++|+.|+..+|+.++.+|++.|++++|.+++++|++.||..+|++|+.+|
T Consensus 588 d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac 667 (857)
T PLN03077 588 DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNAC 667 (857)
T ss_pred CcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999778999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhccccccccCccccccCC
Q 048364 330 KEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISSLS 399 (400)
Q Consensus 330 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~ 399 (400)
...|+.+.++...+++.+.. | .+...|..|...|...|+|++|.++.+.|.+.|++++|++|||+++|
T Consensus 668 ~~~~~~e~~e~~a~~l~~l~-p-~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~ 735 (857)
T PLN03077 668 RIHRHVELGELAAQHIFELD-P-NSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKG 735 (857)
T ss_pred HHcCChHHHHHHHHHHHhhC-C-CCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECC
Confidence 99999999999999999998 8 88999999999999999999999999999999999999999999987
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-61 Score=457.63 Aligned_cols=384 Identities=17% Similarity=0.255 Sum_probs=362.4
Q ss_pred CHhhHHHHhCCC-CCCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCC-
Q 048364 1 MQLFSQMHRQSV-PSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELP- 77 (400)
Q Consensus 1 l~~~~~m~~~g~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~- 77 (400)
+++|++|.+.|+ +|+..+++.++..|.+.|.++.|.++++.|.. |+..+|+.++.+| +.|+++.|.++|+.|.
T Consensus 390 l~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~ 465 (1060)
T PLN03218 390 IDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQE 465 (1060)
T ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 368999999985 57888889999999999999999999988854 8999999999999 9999999999999997
Q ss_pred ---CCChhhHHHHHHHHHcCCChHHHHHHHhhCC----CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHH
Q 048364 78 ---ERNAVTWNTMIKGYSKSGNVCEARDFFERMP----LRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMT 150 (400)
Q Consensus 78 ---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 150 (400)
.||..+|+++|.+|++.|++++|.++|++|. .||..+|+.||.+|++.|++++|.++|++|. ..|+.||..+
T Consensus 466 ~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~-~~Gv~PD~vT 544 (1060)
T PLN03218 466 AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMR-SKNVKPDRVV 544 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH-HcCCCCCHHH
Confidence 4799999999999999999999999999998 6899999999999999999999999999998 8899999999
Q ss_pred HHHHHHHhhcccchhhhhhhhhhhHHHh--ccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC----CCcccHHHHHH
Q 048364 151 IGAVLSGCSHLGSVGLLMGKSAHGFIVK--NEWELNEQIATILVDMYAKCGFLKYALMVFELMEE----RNVISWTALIC 224 (400)
Q Consensus 151 ~~~ll~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~ 224 (400)
|+.+|.+|++.|+++. |.++++.|.+ .++.||..+|+.++.+|++.|++++|.++|+.|.+ |+..+|+.+|.
T Consensus 545 YnsLI~a~~k~G~~de--A~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ 622 (1060)
T PLN03218 545 FNALISACGQSGAVDR--AFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVN 622 (1060)
T ss_pred HHHHHHHHHHCCCHHH--HHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHH
Confidence 9999999999999999 9999999986 67899999999999999999999999999999986 57789999999
Q ss_pred HHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChH
Q 048364 225 GSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLE 304 (400)
Q Consensus 225 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 304 (400)
+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+ .|+.|+..+|+.+|.+|++.|+++
T Consensus 623 ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k-~G~~pd~~tynsLI~ay~k~G~~e 701 (1060)
T PLN03218 623 SCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK-QGIKLGTVSYSSLMGACSNAKNWK 701 (1060)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999999999999999999999999999999999995 499999999999999999999999
Q ss_pred HHHHHHHhc---cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHH
Q 048364 305 EAYEVIRTM---RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLM 381 (400)
Q Consensus 305 ~a~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 381 (400)
+|.++|++| ++.||..+|+.+|.+|++.|++++|.++|++|.+.+. .|+..+|..++.+|.+.|++++|.+++++|
T Consensus 702 eA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi-~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M 780 (1060)
T PLN03218 702 KALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGL-CPNTITYSILLVASERKDDADVGLDLLSQA 780 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999 7899999999999999999999999999999999994 499999999999999999999999999999
Q ss_pred hccccccccCcc
Q 048364 382 LNQNVRKARGSS 393 (400)
Q Consensus 382 ~~~~~~~~~~~~ 393 (400)
.+.|+.|+..+.
T Consensus 781 ~k~Gi~pd~~ty 792 (1060)
T PLN03218 781 KEDGIKPNLVMC 792 (1060)
T ss_pred HHcCCCCCHHHH
Confidence 999999987543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-60 Score=455.09 Aligned_cols=384 Identities=18% Similarity=0.288 Sum_probs=361.6
Q ss_pred HhhHHHHhCCCCCCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCC---
Q 048364 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELP--- 77 (400)
Q Consensus 2 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~--- 77 (400)
++|+.|.. ||..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.++.+| +.|++++|.++|++|.
T Consensus 427 ~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G 502 (1060)
T PLN03218 427 RFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG 502 (1060)
T ss_pred HHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC
Confidence 45666653 999999999999999999999999999999999999999999999999 9999999999999998
Q ss_pred -CCChhhHHHHHHHHHcCCChHHHHHHHhhCC----CCChhhHHHHHHHHHhcCCcchHHHHHHHHHh-cCCCCCCHHHH
Q 048364 78 -ERNAVTWNTMIKGYSKSGNVCEARDFFERMP----LRNVASWSAMIAAYLNAGAYDPGLKLFREMIS-NEGLTPDQMTI 151 (400)
Q Consensus 78 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~~~~~p~~~~~ 151 (400)
.||..+|+.+|.+|++.|++++|.++|++|. .||..+|+.||.+|++.|++++|.++|++|.. ..++.||..+|
T Consensus 503 v~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTy 582 (1060)
T PLN03218 503 VEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITV 582 (1060)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHH
Confidence 5899999999999999999999999999996 68999999999999999999999999999973 26899999999
Q ss_pred HHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC----CCcccHHHHHHHHH
Q 048364 152 GAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE----RNVISWTALICGSA 227 (400)
Q Consensus 152 ~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~ 227 (400)
+.++.+|++.|+++. |.++++.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+ ||..+|+.++.+|+
T Consensus 583 naLI~ay~k~G~lde--A~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~ 660 (1060)
T PLN03218 583 GALMKACANAGQVDR--AKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAG 660 (1060)
T ss_pred HHHHHHHHHCCCHHH--HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 999999999999999 999999999999999999999999999999999999999999985 78999999999999
Q ss_pred hCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHH
Q 048364 228 HRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAY 307 (400)
Q Consensus 228 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 307 (400)
+.|++++|.+++++|.+.|+.||..+|+++|.+|++.|++++|.++|+.|.+ .++.||..+|+.+|.+|++.|++++|.
T Consensus 661 k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~-~g~~PdvvtyN~LI~gy~k~G~~eeAl 739 (1060)
T PLN03218 661 HAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS-IKLRPTVSTMNALITALCEGNQLPKAL 739 (1060)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999984 599999999999999999999999999
Q ss_pred HHHHhc---cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhc----c------------
Q 048364 308 EVIRTM---RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTM----N------------ 368 (400)
Q Consensus 308 ~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~------------ 368 (400)
++|++| |+.||..||+.++.+|++.|++++|.+++++|.+.+ ..|+..+|+.++..|.+ .
T Consensus 740 elf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G-i~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~ 818 (1060)
T PLN03218 740 EVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDG-IKPNLVMCRCITGLCLRRFEKACALGEPVVSFDS 818 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhc
Confidence 999999 899999999999999999999999999999999999 55999999999866432 1
Q ss_pred -------cchHHHHHHHHHHhccccccccCcc
Q 048364 369 -------EKWEGAERVRKLMLNQNVRKARGSS 393 (400)
Q Consensus 369 -------g~~~~a~~~~~~m~~~~~~~~~~~~ 393 (400)
+..+.|..+|++|.+.|+.|+..+.
T Consensus 819 g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~ 850 (1060)
T PLN03218 819 GRPQIENKWTSWALMVYRETISAGTLPTMEVL 850 (1060)
T ss_pred cccccccchHHHHHHHHHHHHHCCCCCCHHHH
Confidence 2246799999999999999987654
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-59 Score=451.99 Aligned_cols=384 Identities=26% Similarity=0.448 Sum_probs=348.1
Q ss_pred CHhhHHHHhCCCCCCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCCC
Q 048364 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPER 79 (400)
Q Consensus 1 l~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~ 79 (400)
+++|++|+..|+.||..||+.++++|+..+++..+.+++..+.+.|+.||..+++.++.+| +.|++++|.++|++|+++
T Consensus 172 ~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~ 251 (857)
T PLN03077 172 LCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRR 251 (857)
T ss_pred HHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCC
Confidence 3689999999999999999999999999999999999999999999999999999999999 999999999999988876
Q ss_pred ChhhHHHHHHHHH-------------------------------------------------------------------
Q 048364 80 NAVTWNTMIKGYS------------------------------------------------------------------- 92 (400)
Q Consensus 80 ~~~~~~~l~~~~~------------------------------------------------------------------- 92 (400)
|..+||++|.+|+
T Consensus 252 d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~ 331 (857)
T PLN03077 252 DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQ 331 (857)
T ss_pred CcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHH
Confidence 6666655555554
Q ss_pred ---cCCChHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhh
Q 048364 93 ---KSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMG 169 (400)
Q Consensus 93 ---~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a 169 (400)
+.|++++|.++|++|..||..+||+++.+|++.|++++|+++|++|. ..|+.||..||+.++.+|++.|+++. +
T Consensus 332 ~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~-~~g~~Pd~~t~~~ll~a~~~~g~~~~--a 408 (857)
T PLN03077 332 MYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALME-QDNVSPDEITIASVLSACACLGDLDV--G 408 (857)
T ss_pred HHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHH-HhCCCCCceeHHHHHHHHhccchHHH--H
Confidence 45555566666666677888899999999999999999999999998 88999999999999999999999999 9
Q ss_pred hhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCC
Q 048364 170 KSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKP 249 (400)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 249 (400)
.++++.+.+.|+.|+..+++.|+++|++.|++++|.++|++|.++|..+|+.+|.+|++.|+.++|+.+|++|.. ++.|
T Consensus 409 ~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~p 487 (857)
T PLN03077 409 VKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKP 487 (857)
T ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999986 5999
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhccCCccHHHHHHHHHHH
Q 048364 250 NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAAC 329 (400)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~~~~~~~l~~~~ 329 (400)
|..||+.++.+|++.|+++.+.+++..+.+ .|+.++..++++|+.+|+++|++++|.++|+++ .||..+|+++|.+|
T Consensus 488 d~~t~~~lL~a~~~~g~l~~~~~i~~~~~~-~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~ 564 (857)
T PLN03077 488 NSVTLIAALSACARIGALMCGKEIHAHVLR-TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGY 564 (857)
T ss_pred CHhHHHHHHHHHhhhchHHHhHHHHHHHHH-hCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHH
Confidence 999999999999999999999999999984 599999999999999999999999999999988 78999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHh-ccccccccCc
Q 048364 330 KEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLML-NQNVRKARGS 392 (400)
Q Consensus 330 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~~~~~~~~~ 392 (400)
++.|+.++|.++|++|.+.+ ..|+..||..++.+|.+.|++++|.++|+.|. +.|+.|+..+
T Consensus 565 ~~~G~~~~A~~lf~~M~~~g-~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~ 627 (857)
T PLN03077 565 VAHGKGSMAVELFNRMVESG-VNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKH 627 (857)
T ss_pred HHcCCHHHHHHHHHHHHHcC-CCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHH
Confidence 99999999999999999888 44899999999999999999999999999998 6788887644
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-57 Score=432.10 Aligned_cols=376 Identities=22% Similarity=0.354 Sum_probs=360.2
Q ss_pred CCCCchhHHHHHHHhcccchhHHHHHHHHHHHHhC-cccchhhhhHHHHHH-HhCCHHHHHHHHhhCC----CCChhhHH
Q 048364 12 VPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLG-FISHVYVATSLLHEY-VVTSFGFARKLFDELP----ERNAVTWN 85 (400)
Q Consensus 12 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~----~~~~~~~~ 85 (400)
..++..+|+.++..+.+.|++++|.++|+.|...+ ..||..+|+.++.++ +.++++.+..++..|. .||..+||
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 34566799999999999999999999999998875 679999999999999 9999999999999886 48999999
Q ss_pred HHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchh
Q 048364 86 TMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVG 165 (400)
Q Consensus 86 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~ 165 (400)
.++.+|++.|++++|.++|++|..||..+||+++.+|++.|++++|+++|++|. ..|+.||..||+.++.+|++.|..+
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~-~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMW-EDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHH-HhCCCCChhhHHHHHHHHhcCCcHH
Confidence 999999999999999999999999999999999999999999999999999999 8899999999999999999999999
Q ss_pred hhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHC
Q 048364 166 LLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQAT 245 (400)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 245 (400)
. +.+++..+.+.|+.+|..+++.|+++|++.|++++|.++|++|.++|..+||.++.+|++.|++++|.++|++|.+.
T Consensus 242 ~--~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~ 319 (697)
T PLN03081 242 A--GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS 319 (697)
T ss_pred H--HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 9 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhccCCccHHHHHHH
Q 048364 246 GVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSF 325 (400)
Q Consensus 246 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~~~~~~~l 325 (400)
|+.||..||++++.+|++.|++++|.++++.|.+ .|+.|+..+|+.|+.+|+++|++++|.++|++|. .||..+||.+
T Consensus 320 g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~-~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~l 397 (697)
T PLN03081 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR-TGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNAL 397 (697)
T ss_pred CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHH-hCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHH
Confidence 9999999999999999999999999999999995 4999999999999999999999999999999995 5899999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc-cccccccCcc
Q 048364 326 LAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN-QNVRKARGSS 393 (400)
Q Consensus 326 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~~~ 393 (400)
|.+|++.|+.++|.++|++|.+.+ ..|+..||..++.+|.+.|..++|.++|+.|.+ .|+.|+..+.
T Consensus 398 I~~y~~~G~~~~A~~lf~~M~~~g-~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y 465 (697)
T PLN03081 398 IAGYGNHGRGTKAVEMFERMIAEG-VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHY 465 (697)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccch
Confidence 999999999999999999999999 559999999999999999999999999999986 6998886553
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-25 Score=223.04 Aligned_cols=358 Identities=12% Similarity=0.063 Sum_probs=173.8
Q ss_pred CchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCC---CChhhHHHHHHH
Q 048364 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPE---RNAVTWNTMIKG 90 (400)
Q Consensus 15 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~ 90 (400)
+...+..+...+...|++++|.+.++.+.+..+. +..++..+...+ ..|+.++|...++++.. .+...+..++..
T Consensus 498 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 576 (899)
T TIGR02917 498 FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQY 576 (899)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHH
Confidence 3444455555555555555555555555554322 334444444455 55555555555555432 123334444445
Q ss_pred HHcCCChHHHHHHHhhCC---CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcC-------------------------
Q 048364 91 YSKSGNVCEARDFFERMP---LRNVASWSAMIAAYLNAGAYDPGLKLFREMISNE------------------------- 142 (400)
Q Consensus 91 ~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~------------------------- 142 (400)
+.+.|++++|.++++.+. +.+...|..+..++.+.|++++|...|+++.+..
T Consensus 577 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 656 (899)
T TIGR02917 577 YLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAIT 656 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHH
Confidence 555555555555554443 1233444445555555555555555555444110
Q ss_pred ------CCCC-CHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC--
Q 048364 143 ------GLTP-DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE-- 213 (400)
Q Consensus 143 ------~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 213 (400)
...| +..++..+...+...|+++. +..+++.+.+.. +.+...+..+...+...|++++|.+.|+.+.+
T Consensus 657 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 733 (899)
T TIGR02917 657 SLKRALELKPDNTEAQIGLAQLLLAAKRTES--AKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA 733 (899)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH--HHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 1112 23344444444444444444 444444444433 22333444444455555555555555554432
Q ss_pred CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHH
Q 048364 214 RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCM 293 (400)
Q Consensus 214 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 293 (400)
|+..++..++.++.+.|++++|...++++.+.. +.+...+..+...|...|++++|..+|+++.+. .+++...++.+
T Consensus 734 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l 810 (899)
T TIGR02917 734 PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNL 810 (899)
T ss_pred CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 333344444455555555555555555554432 223444455555555555555555555555531 23344445555
Q ss_pred HHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccch
Q 048364 294 VDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKW 371 (400)
Q Consensus 294 ~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 371 (400)
+..+...|+ .+|+..++++ ...| +..++..+...+...|++++|..+++++++.+ | .++.++..++.++.+.|++
T Consensus 811 ~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~-~~~~~~~~l~~~~~~~g~~ 887 (899)
T TIGR02917 811 AWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA-P-EAAAIRYHLALALLATGRK 887 (899)
T ss_pred HHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-C-CChHHHHHHHHHHHHcCCH
Confidence 555555555 4455555554 2222 23344455555555566666666666666655 5 4555555566666666666
Q ss_pred HHHHHHHHHHh
Q 048364 372 EGAERVRKLML 382 (400)
Q Consensus 372 ~~a~~~~~~m~ 382 (400)
++|.+++++|+
T Consensus 888 ~~A~~~~~~~~ 898 (899)
T TIGR02917 888 AEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHHh
Confidence 66666655554
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-24 Score=216.13 Aligned_cols=371 Identities=13% Similarity=0.066 Sum_probs=230.7
Q ss_pred hHHHHhCCCCCCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCC---C
Q 048364 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPE---R 79 (400)
Q Consensus 4 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~---~ 79 (400)
++.+... .+++..++..+...+...|++++|.+.|+++.+..+. +...+..+...+ ..|++++|...++++.+ .
T Consensus 454 ~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 531 (899)
T TIGR02917 454 AKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD-FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK 531 (899)
T ss_pred HHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC
Confidence 3444332 3556777888888888888888888888888775432 444566666777 88888888888887763 3
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHHhhCC---CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 048364 80 NAVTWNTMIKGYSKSGNVCEARDFFERMP---LRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLS 156 (400)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~ 156 (400)
+..++..+...+.+.|+.++|...|+++. ..+...+..++..+.+.|++++|.++++++. . ..+.+..+|..+..
T Consensus 532 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~-~~~~~~~~~~~l~~ 609 (899)
T TIGR02917 532 NLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAA-D-AAPDSPEAWLMLGR 609 (899)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHH-H-cCCCCHHHHHHHHH
Confidence 56677788888888888888888888774 3355677778888888888888888888887 2 33456677888888
Q ss_pred HhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CcccHHHHHHHHHhCCChh
Q 048364 157 GCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE--R-NVISWTALICGSAHRGYSE 233 (400)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~ 233 (400)
++...|+++. |...+..+.+.. +.+...+..+..+|...|++++|...|+++.+ | +..++..++..+...|+++
T Consensus 610 ~~~~~~~~~~--A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 686 (899)
T TIGR02917 610 AQLAAGDLNK--AVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTE 686 (899)
T ss_pred HHHHcCCHHH--HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Confidence 8888888888 888888877654 23456677777888888888888888877654 2 3345555555566666666
Q ss_pred hHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhc-------------------------------C
Q 048364 234 DALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEY-------------------------------D 282 (400)
Q Consensus 234 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------------------------------~ 282 (400)
+|..+++.+...+ +++...+..+...+...|++++|.+.++.+.... .
T Consensus 687 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 765 (899)
T TIGR02917 687 SAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKT 765 (899)
T ss_pred HHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 6666665555543 2234444445555555555555555555544210 1
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cC-CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHH
Q 048364 283 LEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RL-EPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360 (400)
Q Consensus 283 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 360 (400)
.+.+...+..+...|...|++++|.+.|+++ .. +++..+++.+...+...|+ ++|..+++++.+.. | .++.++..
T Consensus 766 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~-~~~~~~~~ 842 (899)
T TIGR02917 766 HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-P-NIPAILDT 842 (899)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-C-CCcHHHHH
Confidence 1223333444444444444444444444444 11 2233344444444444444 44444444444444 4 44444445
Q ss_pred HHHHhhcccchHHHHHHHHHHhccc
Q 048364 361 ICDLYTMNEKWEGAERVRKLMLNQN 385 (400)
Q Consensus 361 l~~~~~~~g~~~~a~~~~~~m~~~~ 385 (400)
++.++...|++++|.++++++.+.+
T Consensus 843 ~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 843 LGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 5555555555555555555555533
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-22 Score=180.49 Aligned_cols=291 Identities=13% Similarity=0.120 Sum_probs=171.7
Q ss_pred cCCChHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCC---HHHHHHHHHHhhcccchhh
Q 048364 93 KSGNVCEARDFFERMPL--R-NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPD---QMTIGAVLSGCSHLGSVGL 166 (400)
Q Consensus 93 ~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~ll~~~~~~~~~~~ 166 (400)
..|++++|+..|+++.. | +..++..+...+...|++++|..+++.+. ..+..++ ...+..+...+.+.|+++.
T Consensus 47 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l-~~~~~~~~~~~~~~~~La~~~~~~g~~~~ 125 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLL-SRPDLTREQRLLALQELGQDYLKAGLLDR 125 (389)
T ss_pred hcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 34444444444444431 1 22334444444444444444444444444 2111110 1233444444444444444
Q ss_pred hhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCc--------ccHHHHHHHHHhCCChhhHHHH
Q 048364 167 LMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNV--------ISWTALICGSAHRGYSEDALSL 238 (400)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~a~~~ 238 (400)
|..++..+.+.. +.+..++..++.++.+.|++++|.+.++.+.+.+. ..+..+...+.+.|++++|...
T Consensus 126 --A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 126 --AEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred --HHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 444444444331 22344555566666666666666666666654211 1234556666777777888887
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc
Q 048364 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP 317 (400)
Q Consensus 239 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p 317 (400)
|+++.+.. +.+...+..+...+.+.|++++|.++++++.+. +......++..++.+|...|++++|...++++ ...|
T Consensus 203 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p 280 (389)
T PRK11788 203 LKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYP 280 (389)
T ss_pred HHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 77776653 223456666777777788888888888877742 21112345677777888888888888888877 5566
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhc---ccchHHHHHHHHHHhccccccccCc
Q 048364 318 NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTM---NEKWEGAERVRKLMLNQNVRKARGS 392 (400)
Q Consensus 318 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~ 392 (400)
+...+..++..+.+.|++++|..+++++.+.. | +...+..++..+.. .|+.+++..++++|.+.++.|+|.+
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~-P--~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRRH-P--SLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-c--CHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 66666777778888888888888888887776 5 44456655555543 4577788888888888888877773
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.6e-22 Score=176.87 Aligned_cols=296 Identities=14% Similarity=0.052 Sum_probs=216.9
Q ss_pred HhCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHhhCCCC-C------hhhHHHHHHHHHhcCCcchH
Q 048364 62 VVTSFGFARKLFDELPE--R-NAVTWNTMIKGYSKSGNVCEARDFFERMPLR-N------VASWSAMIAAYLNAGAYDPG 131 (400)
Q Consensus 62 ~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~------~~~~~~l~~~~~~~g~~~~a 131 (400)
..|++++|...|+++.+ | +..++..+...+...|++++|..+++.+... + ...+..++..|.+.|++++|
T Consensus 47 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A 126 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRA 126 (389)
T ss_pred hcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 56666667776666653 2 3345666666666777777777776665421 1 13456666777777777777
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccch----HHHHHHHHHHHHhcCCHHHHHHH
Q 048364 132 LKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELN----EQIATILVDMYAKCGFLKYALMV 207 (400)
Q Consensus 132 ~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~ 207 (400)
..+|+++. .. -+++..++..++..+.+.|++++ |...++.+.+.+..+. ...+..+...+.+.|++++|...
T Consensus 127 ~~~~~~~l-~~-~~~~~~~~~~la~~~~~~g~~~~--A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 127 EELFLQLV-DE-GDFAEGALQQLLEIYQQEKDWQK--AIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHH-cC-CcchHHHHHHHHHHHHHhchHHH--HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 77777776 21 23345566677777777777777 7777776666543321 22456677888899999999999
Q ss_pred HHhccC--C-CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCC
Q 048364 208 FELMEE--R-NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLE 284 (400)
Q Consensus 208 ~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 284 (400)
|+++.+ | +...+..+...+.+.|++++|.++++++...+......++..++.+|.+.|++++|...++.+.+. .
T Consensus 203 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~ 279 (389)
T PRK11788 203 LKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE---Y 279 (389)
T ss_pred HHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---C
Confidence 999875 3 345677888999999999999999999987643333467888999999999999999999999843 5
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCccHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCCchHHHH
Q 048364 285 PRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNVIIWGSFLAACKE---HKQFDMAERVIKQALRMVKPENDGGVFTL 360 (400)
Q Consensus 285 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 360 (400)
|+...+..++..+.+.|++++|..+++++ ...|+..+++.++..+.. .|+.+++..+++++.+... .+++.
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~-~~~p~---- 354 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQL-KRKPR---- 354 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHH-hCCCC----
Confidence 66667788999999999999999999987 668999999988887764 5589999999999998773 24544
Q ss_pred HHHHhhcccch
Q 048364 361 ICDLYTMNEKW 371 (400)
Q Consensus 361 l~~~~~~~g~~ 371 (400)
..|.++|-.
T Consensus 355 --~~c~~cg~~ 363 (389)
T PRK11788 355 --YRCRNCGFT 363 (389)
T ss_pred --EECCCCCCC
Confidence 335555544
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.7e-22 Score=171.28 Aligned_cols=357 Identities=13% Similarity=0.118 Sum_probs=290.7
Q ss_pred CCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCCCCh--hh-HHHHHH
Q 048364 14 SDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPERNA--VT-WNTMIK 89 (400)
Q Consensus 14 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~~~--~~-~~~l~~ 89 (400)
.-..+|..+...+...|+++.|+.+++.+++..++ ....|..+..++ ..|+.+.|...|.+..+-|+ .. .+.+..
T Consensus 114 q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgn 192 (966)
T KOG4626|consen 114 QGAEAYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGN 192 (966)
T ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhH
Confidence 34678999999999999999999999999986533 566788888888 99999999999988876444 32 334455
Q ss_pred HHHcCCChHHHHHHHhhCC--CCC-hhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCH-HHHHHHHHHhhcccchh
Q 048364 90 GYSKSGNVCEARDFFERMP--LRN-VASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQ-MTIGAVLSGCSHLGSVG 165 (400)
Q Consensus 90 ~~~~~~~~~~a~~~~~~~~--~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~ll~~~~~~~~~~ 165 (400)
.+...|+.++|...|.+.. .|. ..+|+.|...+-..|+...|++.|++.+ .+.|+- ..|..+-..|...+.++
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAv---kldP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAV---KLDPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhh---cCCCcchHHHhhHHHHHHHHhcch
Confidence 5667889999988887755 332 4688889999999999999999999988 556653 47888888888888888
Q ss_pred hhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC--CC-cccHHHHHHHHHhCCChhhHHHHHHHH
Q 048364 166 LLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE--RN-VISWTALICGSAHRGYSEDALSLFEMM 242 (400)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m 242 (400)
. |...+....... +-...++..+...|..+|..|.|+..|++..+ |+ +..|+.|..++-..|+..+|...|.+.
T Consensus 270 ~--Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 270 R--AVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred H--HHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 8 777776665543 22456677788888899999999999998876 33 468999999999999999999999988
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHhc-cCCccH-
Q 048364 243 QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR-IQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNV- 319 (400)
Q Consensus 243 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~- 319 (400)
.... .-.....+.|...+...|.++.|..+|....+ +.|. ...++.|...|-.+|++++|+..+++. .+.|+.
T Consensus 347 L~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fA 422 (966)
T KOG4626|consen 347 LRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFA 422 (966)
T ss_pred HHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHH
Confidence 8762 22456788899999999999999999998884 3443 467888999999999999999999988 888865
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 320 IIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 320 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
..|+.+...|-..|+.+.|.+.+.+++..+ | .-..++..|..+|...|+..+|+.-++...+
T Consensus 423 da~~NmGnt~ke~g~v~~A~q~y~rAI~~n-P-t~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 423 DALSNMGNTYKEMGDVSAAIQCYTRAIQIN-P-TFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HHHHhcchHHHHhhhHHHHHHHHHHHHhcC-c-HHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 478999999999999999999999999988 8 7788899999999999999999999988876
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.9e-20 Score=172.81 Aligned_cols=356 Identities=11% Similarity=-0.004 Sum_probs=277.0
Q ss_pred HHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHcC
Q 048364 19 ILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPER---NAVTWNTMIKGYSKS 94 (400)
Q Consensus 19 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~ 94 (400)
+......+.+.|+++.|...|++.++. .|+...|..+..++ ..|++++|+..++...+. +...|..+..++...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 445667778889999999999998874 56677788888888 999999999999988753 456788899999999
Q ss_pred CChHHHHHHHhhCCC---------------------------------CChhhHHHHHH---------------------
Q 048364 95 GNVCEARDFFERMPL---------------------------------RNVASWSAMIA--------------------- 120 (400)
Q Consensus 95 ~~~~~a~~~~~~~~~---------------------------------~~~~~~~~l~~--------------------- 120 (400)
|++++|+..|..... ++...+..+..
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELD 287 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccc
Confidence 999999875543210 00000000000
Q ss_pred ---------HH------HhcCCcchHHHHHHHHHhcCCCCCC-HHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccch
Q 048364 121 ---------AY------LNAGAYDPGLKLFREMISNEGLTPD-QMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELN 184 (400)
Q Consensus 121 ---------~~------~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 184 (400)
.. ...+++++|.+.|++........|+ ...+..+...+...|+++. |...++...+... ..
T Consensus 288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~e--A~~~~~kal~l~P-~~ 364 (615)
T TIGR00990 288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLE--ALADLSKSIELDP-RV 364 (615)
T ss_pred cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHcCC-Cc
Confidence 00 1125788999999998833233453 4567777888889999999 9999998887642 24
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048364 185 EQIATILVDMYAKCGFLKYALMVFELMEE---RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTAC 261 (400)
Q Consensus 185 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 261 (400)
...|..+..++...|++++|...|++..+ .+...|..+...+...|++++|+..|++..+.. +.+...+..+..++
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~ 443 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHH
Confidence 56788889999999999999999998875 356788889999999999999999999998863 23567777888899
Q ss_pred HhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCccH-H-------HHHHHHHHHHhc
Q 048364 262 VHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNV-I-------IWGSFLAACKEH 332 (400)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~-~-------~~~~l~~~~~~~ 332 (400)
.+.|++++|...++...+ ..+.+...++.+...+...|++++|.+.|++. .+.|+. . .++.....+...
T Consensus 444 ~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~ 521 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWK 521 (615)
T ss_pred HHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHh
Confidence 999999999999999985 33446788899999999999999999999997 444431 1 122222334457
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhcc
Q 048364 333 KQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 333 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
|++++|..++++++... | .+..++..++.++...|++++|++.|++..+.
T Consensus 522 ~~~~eA~~~~~kAl~l~-p-~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 522 QDFIEAENLCEKALIID-P-ECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred hhHHHHHHHHHHHHhcC-C-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999999999998 8 77778999999999999999999999998754
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.6e-20 Score=172.54 Aligned_cols=325 Identities=12% Similarity=-0.011 Sum_probs=245.8
Q ss_pred hhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHH
Q 048364 17 FSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPE--R-NAVTWNTMIKGYS 92 (400)
Q Consensus 17 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~ 92 (400)
.....++..+.+.|++++|..+++..+...+.+....+ .+.... ..|++++|...++++.. | +...+..+...+.
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~-~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~ 121 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLR-RWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLL 121 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHH-HHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 33556677788889999999999998887655433333 444555 89999999999998874 3 4567888888889
Q ss_pred cCCChHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhh
Q 048364 93 KSGNVCEARDFFERMPL--R-NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMG 169 (400)
Q Consensus 93 ~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a 169 (400)
+.|++++|+..|++... | +...+..+...+...|++++|...++.+... .|+.......+..+...|++++ |
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~---~P~~~~a~~~~~~l~~~g~~~e--A 196 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE---VPPRGDMIATCLSFLNKSRLPE--D 196 (656)
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHcCCHHH--H
Confidence 99999999999988762 3 5668888888999999999999999887622 3333222222334778899988 8
Q ss_pred hhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHhCCChhh----HHHHHHHH
Q 048364 170 KSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE---RNVISWTALICGSAHRGYSED----ALSLFEMM 242 (400)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~----a~~~~~~m 242 (400)
...++.+.+....++......+..++...|++++|...+++..+ .+...+..+...+...|++++ |...|++.
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 88888877765444444555567788889999999999988775 245567778888899999885 78888888
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCccHHH
Q 048364 243 QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNVII 321 (400)
Q Consensus 243 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~~~ 321 (400)
.+.. +.+...+..+...+...|++++|...++...+. -+.+...+..+..+|.+.|++++|...++++ ...|+...
T Consensus 277 l~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~ 353 (656)
T PRK15174 277 LQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSK 353 (656)
T ss_pred HhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchH
Confidence 8763 235677888888899999999999999988843 2334566777888899999999999999888 55665543
Q ss_pred -HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048364 322 -WGSFLAACKEHKQFDMAERVIKQALRMVKP 351 (400)
Q Consensus 322 -~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 351 (400)
+..+..++...|+.++|...|+++.+.. |
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~~~-P 383 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQAR-A 383 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-h
Confidence 3445667888999999999999999887 6
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.6e-20 Score=161.16 Aligned_cols=354 Identities=13% Similarity=0.169 Sum_probs=298.2
Q ss_pred hhHHHHhCCCCCCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHH-H-HhCCHHHHHHHHhhCCC--
Q 048364 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE-Y-VVTSFGFARKLFDELPE-- 78 (400)
Q Consensus 3 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~-~~g~~~~a~~~~~~~~~-- 78 (400)
+++.|.+.. +-....|..+..++...|+.+.|.+.|...++ +.|+.....+-+.. + ..|++.+|...+.+..+
T Consensus 138 ~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q 214 (966)
T KOG4626|consen 138 LYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQ 214 (966)
T ss_pred HHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhC
Confidence 444554442 33578899999999999999999999999988 56776655544444 4 89999999999988775
Q ss_pred CC-hhhHHHHHHHHHcCCChHHHHHHHhhCCCCC---hhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCH-HHHHH
Q 048364 79 RN-AVTWNTMIKGYSKSGNVCEARDFFERMPLRN---VASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQ-MTIGA 153 (400)
Q Consensus 79 ~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~ 153 (400)
|. ...|+.|...+-.+|++..|+..|++...-| ..+|-.|...|...+.+++|+..|.+.. ...|+. ..+..
T Consensus 215 p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl---~lrpn~A~a~gN 291 (966)
T KOG4626|consen 215 PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRAL---NLRPNHAVAHGN 291 (966)
T ss_pred CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHH---hcCCcchhhccc
Confidence 43 4679999999999999999999999987433 4689999999999999999999999988 556754 57788
Q ss_pred HHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CcccHHHHHHHHHhCC
Q 048364 154 VLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE--R-NVISWTALICGSAHRG 230 (400)
Q Consensus 154 ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~ 230 (400)
+...|...|.++. |...++...+.... -+..|+.|..++-..|+..+|.+.|++... | ...+.+.|...|...|
T Consensus 292 la~iYyeqG~ldl--AI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~ 368 (966)
T KOG4626|consen 292 LACIYYEQGLLDL--AIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQG 368 (966)
T ss_pred eEEEEeccccHHH--HHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc
Confidence 8888999999999 99999988876532 367899999999999999999999999876 3 4568899999999999
Q ss_pred ChhhHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCC-hhhHHHHHHHHHhcCChHHHHH
Q 048364 231 YSEDALSLFEMMQATGVKPN-EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR-IQHYGCMVDLFGKAGFLEEAYE 308 (400)
Q Consensus 231 ~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~ 308 (400)
..++|..+|....+- .|. ...++.|...|-+.|++++|...|++.. .+.|+ ...|+.+...|...|+.+.|.+
T Consensus 369 ~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q 443 (966)
T KOG4626|consen 369 KIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQ 443 (966)
T ss_pred cchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHH
Confidence 999999999998774 444 4678899999999999999999999998 56776 4789999999999999999999
Q ss_pred HHHhc-cCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchH
Q 048364 309 VIRTM-RLEPN-VIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWE 372 (400)
Q Consensus 309 ~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 372 (400)
.+.+. .+.|. ...++.|...|-..|++.+|++.+++.++.. | +.+.+|-.++.+..--.+|.
T Consensus 444 ~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk-P-DfpdA~cNllh~lq~vcdw~ 507 (966)
T KOG4626|consen 444 CYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK-P-DFPDAYCNLLHCLQIVCDWT 507 (966)
T ss_pred HHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC-C-CCchhhhHHHHHHHHHhccc
Confidence 99988 77785 4578999999999999999999999999999 8 88899988888765444443
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.9e-19 Score=175.37 Aligned_cols=346 Identities=9% Similarity=0.020 Sum_probs=181.4
Q ss_pred HHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCC--CCh---hhHH-----------
Q 048364 23 LKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPE--RNA---VTWN----------- 85 (400)
Q Consensus 23 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~--~~~---~~~~----------- 85 (400)
...+...|++++|...|++.++..+. +...+..+...+ +.|++++|+..|++..+ |+. ..|.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 44556778999999999998886433 566777777778 89999999999888764 321 1121
Q ss_pred -HHHHHHHcCCChHHHHHHHhhCC---CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCC-HHHHHHHHHHh--
Q 048364 86 -TMIKGYSKSGNVCEARDFFERMP---LRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPD-QMTIGAVLSGC-- 158 (400)
Q Consensus 86 -~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~-- 158 (400)
.....+.+.|++++|++.|++.. +.+...+..+..++...|++++|++.|++..+ ..|+ ...+..+...+
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~---~~p~~~~a~~~L~~l~~~ 431 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALR---MDPGNTNAVRGLANLYRQ 431 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHh
Confidence 12345678899999999998876 23556777888889999999999999988872 2343 33333333333
Q ss_pred ----------------------------------------hcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhc
Q 048364 159 ----------------------------------------SHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKC 198 (400)
Q Consensus 159 ----------------------------------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 198 (400)
...|++++ |...++...+.... +..++..+...|.+.
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~e--A~~~~~~Al~~~P~-~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQ--AAELQRQRLALDPG-SVWLTYRLAQDLRQA 508 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHH--HHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 23344444 44444444433211 233344444455555
Q ss_pred CCHHHHHHHHHhccC--C-CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHH---------HHHHHHHHHHhcCC
Q 048364 199 GFLKYALMVFELMEE--R-NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEM---------TFTGVLTACVHTGL 266 (400)
Q Consensus 199 g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---------~~~~l~~~~~~~~~ 266 (400)
|++++|...++++.+ | +...+..+...+...++.++|+..++.+......++.. .+......+...|+
T Consensus 509 G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 509 GQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 555555555544432 1 12222222222233333333333333221110000000 00111222233333
Q ss_pred hhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048364 267 VDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQ 344 (400)
Q Consensus 267 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 344 (400)
.++|.++++. .+++...+..+...+.+.|++++|++.|++. ...| +...+..++..+...|++++|...++.
T Consensus 589 ~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 589 EAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3333333320 1223334444555555555555555555555 3233 334455555555555555555555555
Q ss_pred HHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 345 ALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 345 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
+.+.. | .+..+...+..++...|++++|.++++++..
T Consensus 663 ll~~~-p-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 663 LPATA-N-DSLNTQRRVALAWAALGDTAAAQRTFNRLIP 699 (1157)
T ss_pred HhccC-C-CChHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 55444 4 4444555555555555555555555555544
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-18 Score=163.80 Aligned_cols=345 Identities=9% Similarity=-0.056 Sum_probs=266.9
Q ss_pred ccchhHHHHHHHHHHHHhCc--ccchhhhhHHHHHH-HhCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHcCCChHHHH
Q 048364 28 HFNNLTVIHHLHSHILKLGF--ISHVYVATSLLHEY-VVTSFGFARKLFDELPE--R-NAVTWNTMIKGYSKSGNVCEAR 101 (400)
Q Consensus 28 ~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~ 101 (400)
+..+++.---++....+.-- ..+..-...++..+ +.|++++|..+++.... | +...+..++.+....|++++|+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~ 96 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVL 96 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHH
Confidence 44555555444444322210 11222233344455 99999999999998864 2 4556666777788899999999
Q ss_pred HHHhhCC--CC-ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCC-HHHHHHHHHHhhcccchhhhhhhhhhhHHH
Q 048364 102 DFFERMP--LR-NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPD-QMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177 (400)
Q Consensus 102 ~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~ 177 (400)
..|+++. .| +...+..+...+.+.|++++|...+++.. .+.|+ ...+..+..++...|+.++ |...++.+.
T Consensus 97 ~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al---~l~P~~~~a~~~la~~l~~~g~~~e--A~~~~~~~~ 171 (656)
T PRK15174 97 QVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAW---LAFSGNSQIFALHLRTLVLMDKELQ--AISLARTQA 171 (656)
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCcHHHHHHHHHHHHHCCChHH--HHHHHHHHH
Confidence 9999986 33 66788889999999999999999999998 34554 5577888899999999999 998888776
Q ss_pred hccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCC----cccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHH
Q 048364 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERN----VISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMT 253 (400)
Q Consensus 178 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 253 (400)
.....+.. .+..+ ..+...|++++|...++.+.+.+ ...+..+...+...|++++|+..++++.... +.+...
T Consensus 172 ~~~P~~~~-a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~ 248 (656)
T PRK15174 172 QEVPPRGD-MIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAAL 248 (656)
T ss_pred HhCCCCHH-HHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHH
Confidence 66544333 33333 34788999999999999876532 2334455678899999999999999998864 335677
Q ss_pred HHHHHHHHHhcCChhh----HHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCcc-HHHHHHHHH
Q 048364 254 FTGVLTACVHTGLVDE----GRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPN-VIIWGSFLA 327 (400)
Q Consensus 254 ~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~-~~~~~~l~~ 327 (400)
+..+...+...|++++ |...++.+.+. .+.+...+..+...+...|++++|...+++. ...|+ ...+..+..
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~ 326 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 8888999999999986 89999999842 2346678899999999999999999999998 55564 456777889
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhcc
Q 048364 328 ACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 328 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
++.+.|++++|...++++.+.. | .+...+..+..++...|++++|...|++..+.
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~~-P-~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLAREK-G-VTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-c-cchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999988 7 55556666788899999999999999988754
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6e-18 Score=169.49 Aligned_cols=370 Identities=10% Similarity=0.017 Sum_probs=277.8
Q ss_pred hhHHHHhCCCCCCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccc-hhhhh------------HHHHHH-HhCCHHH
Q 048364 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISH-VYVAT------------SLLHEY-VVTSFGF 68 (400)
Q Consensus 3 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~------------~l~~~~-~~g~~~~ 68 (400)
.|++..+.. +-+...+..+..++.+.|++++|...|++.++..+... ...+. .....+ +.|++++
T Consensus 291 ~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~e 369 (1157)
T PRK11447 291 ELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQ 369 (1157)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHH
Confidence 344444432 34677888888999999999999999999888654321 11111 112344 8889999
Q ss_pred HHHHHhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHhhCCC--C-ChhhHHH-------------------------
Q 048364 69 ARKLFDELPE---RNAVTWNTMIKGYSKSGNVCEARDFFERMPL--R-NVASWSA------------------------- 117 (400)
Q Consensus 69 a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~------------------------- 117 (400)
|+..|++..+ .+...+..+...+...|++++|++.|++... | +...+..
T Consensus 370 A~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~ 449 (1157)
T PRK11447 370 AERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQR 449 (1157)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHH
Confidence 9999988874 2456677788888999999999999888752 2 2222222
Q ss_pred -----------------HHHHHHhcCCcchHHHHHHHHHhcCCCCCC-HHHHHHHHHHhhcccchhhhhhhhhhhHHHhc
Q 048364 118 -----------------MIAAYLNAGAYDPGLKLFREMISNEGLTPD-QMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179 (400)
Q Consensus 118 -----------------l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~ 179 (400)
+...+...|++++|++.|++.+ ...|+ ...+..+...+.+.|++++ |...++.+.+.
T Consensus 450 ~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al---~~~P~~~~~~~~LA~~~~~~G~~~~--A~~~l~~al~~ 524 (1157)
T PRK11447 450 RSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRL---ALDPGSVWLTYRLAQDLRQAGQRSQ--ADALMRRLAQQ 524 (1157)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHc
Confidence 2344557899999999999998 33564 4567788889999999999 99999998875
Q ss_pred cccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCC----c---------ccHHHHHHHHHhCCChhhHHHHHHHHHHCC
Q 048364 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERN----V---------ISWTALICGSAHRGYSEDALSLFEMMQATG 246 (400)
Q Consensus 180 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~---------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 246 (400)
.. .+...+..+...+...++.++|...++.+.... . ..+..+...+...|+.++|..+++.
T Consensus 525 ~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~----- 598 (1157)
T PRK11447 525 KP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ----- 598 (1157)
T ss_pred CC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----
Confidence 43 244455555666778999999999999886421 1 1123456778899999999999872
Q ss_pred CCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHH
Q 048364 247 VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGS 324 (400)
Q Consensus 247 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~ 324 (400)
.+++...+..+...+.+.|++++|...|+.+.+. -+.+...+..++..|...|++++|++.++.. ...| +...+..
T Consensus 599 ~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~ 676 (1157)
T PRK11447 599 QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRR 676 (1157)
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHH
Confidence 2445567778888999999999999999999953 3446788999999999999999999999988 4455 4556777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCC-----chHHHHHHHHhhcccchHHHHHHHHHHhc-cccc
Q 048364 325 FLAACKEHKQFDMAERVIKQALRMVKPEND-----GGVFTLICDLYTMNEKWEGAERVRKLMLN-QNVR 387 (400)
Q Consensus 325 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~~~~ 387 (400)
+..++...|++++|.+++++++... |... ...+..+...+...|++++|+..+++... .|+.
T Consensus 677 la~~~~~~g~~~eA~~~~~~al~~~-~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~ 744 (1157)
T PRK11447 677 VALAWAALGDTAAAQRTFNRLIPQA-KSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGIT 744 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHhhhC-ccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Confidence 8889999999999999999999876 4222 24666778899999999999999998863 3443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.2e-17 Score=157.24 Aligned_cols=189 Identities=9% Similarity=-0.009 Sum_probs=150.3
Q ss_pred HHHHhcCCHHHHHHHHHhccCCC---cc-cHHHHHHHHHhCCChhhHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcC
Q 048364 193 DMYAKCGFLKYALMVFELMEERN---VI-SWTALICGSAHRGYSEDALSLFEMMQATGVKP---NEMTFTGVLTACVHTG 265 (400)
Q Consensus 193 ~~~~~~g~~~~A~~~~~~~~~~~---~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~~ 265 (400)
..+...|++++|...|+.+.+.+ +. ....+...|...|++++|+..|+++....... .......+..++.+.|
T Consensus 245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g 324 (765)
T PRK10049 245 GALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE 324 (765)
T ss_pred HHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc
Confidence 34567799999999999998642 21 22335778999999999999999987653211 1345666777889999
Q ss_pred ChhhHHHHHHHhhhhcC----------CCCC---hhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHH
Q 048364 266 LVDEGRKYFKMIDEEYD----------LEPR---IQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACK 330 (400)
Q Consensus 266 ~~~~a~~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~ 330 (400)
++++|.++++.+..... -.|+ ...+..+...+...|++++|++.++++ ...| +...+..+...+.
T Consensus 325 ~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~ 404 (765)
T PRK10049 325 NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQ 404 (765)
T ss_pred cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999885311 0122 224556778899999999999999998 4445 5678888999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 331 EHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 331 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
..|++++|++.+++++... | .+...+..++..+...|++++|..+++++++
T Consensus 405 ~~g~~~~A~~~l~~al~l~-P-d~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 405 ARGWPRAAENELKKAEVLE-P-RNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred hcCCHHHHHHHHHHHHhhC-C-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999999999999999 8 8888999999999999999999999998875
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.9e-17 Score=152.63 Aligned_cols=328 Identities=12% Similarity=-0.001 Sum_probs=254.2
Q ss_pred CCCCCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCC-----------
Q 048364 11 SVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPE----------- 78 (400)
Q Consensus 11 g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~----------- 78 (400)
.+.|+...|..+..++.+.|++++|.+.++..++..+. +...+..+..++ ..|++++|+..|.....
T Consensus 155 ~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~ 233 (615)
T TIGR00990 155 ECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQ 233 (615)
T ss_pred hcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHH
Confidence 35678889999999999999999999999999986533 456777788888 99999999865533210
Q ss_pred ----------------------CChhhHHHHHHHH------------------------------------HcCCChHHH
Q 048364 79 ----------------------RNAVTWNTMIKGY------------------------------------SKSGNVCEA 100 (400)
Q Consensus 79 ----------------------~~~~~~~~l~~~~------------------------------------~~~~~~~~a 100 (400)
++...+..+...+ ...+++++|
T Consensus 234 ~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A 313 (615)
T TIGR00990 234 AVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEA 313 (615)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHH
Confidence 0000111110000 123578899
Q ss_pred HHHHhhCCC-----C-ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCC-HHHHHHHHHHhhcccchhhhhhhhhh
Q 048364 101 RDFFERMPL-----R-NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPD-QMTIGAVLSGCSHLGSVGLLMGKSAH 173 (400)
Q Consensus 101 ~~~~~~~~~-----~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~ 173 (400)
++.|+.... | +...|+.+...+...|++++|+..|++.. ...|+ ...|..+...+...|+++. |...+
T Consensus 314 ~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal---~l~P~~~~~~~~la~~~~~~g~~~e--A~~~~ 388 (615)
T TIGR00990 314 ARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI---ELDPRVTQSYIKRASMNLELGDPDK--AEEDF 388 (615)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHCCCHHH--HHHHH
Confidence 999988653 2 44678888899999999999999999998 34565 4578888889999999999 99999
Q ss_pred hHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC
Q 048364 174 GFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE--R-NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPN 250 (400)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 250 (400)
+.+.+.. +.+..++..+...|...|++++|...|++..+ | +...+..+...+.+.|++++|+..|++..+.. +-+
T Consensus 389 ~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~ 466 (615)
T TIGR00990 389 DKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEA 466 (615)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC
Confidence 9887764 34577888999999999999999999999876 3 44567778889999999999999999988752 335
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCC-hh-------hHHHHHHHHHhcCChHHHHHHHHhc-cCCcc-HH
Q 048364 251 EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR-IQ-------HYGCMVDLFGKAGFLEEAYEVIRTM-RLEPN-VI 320 (400)
Q Consensus 251 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~-------~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~-~~ 320 (400)
...++.+..++...|++++|...|+...+- .|+ .. .++.....+...|++++|.+++++. ...|+ ..
T Consensus 467 ~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~ 543 (615)
T TIGR00990 467 PDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDI 543 (615)
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 678888999999999999999999998842 222 11 1222223344579999999999987 55664 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 321 IWGSFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 321 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
.+..+...+.+.|++++|...|+++.+..
T Consensus 544 a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 544 AVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 78889999999999999999999999887
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-15 Score=146.48 Aligned_cols=187 Identities=10% Similarity=0.092 Sum_probs=134.5
Q ss_pred HHHHHhcCCHHHHHHHHHhccC--CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhh
Q 048364 192 VDMYAKCGFLKYALMVFELMEE--RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDE 269 (400)
Q Consensus 192 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 269 (400)
...+...|++++|...|+++.. ++...+..+...+.+.|+.++|...+++..+.. +++...+..+...+...|++++
T Consensus 516 A~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~e 594 (987)
T PRK09782 516 AYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPEL 594 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHH
Confidence 3344567777777777766553 333445555666777777777777777776653 1222223333334445588888
Q ss_pred HHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048364 270 GRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALR 347 (400)
Q Consensus 270 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (400)
|...+++..+ ..|+...+..+..++.+.|++++|...+++. ...| +...++.+..++...|++++|+..++++++
T Consensus 595 Al~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~ 671 (987)
T PRK09782 595 ALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHK 671 (987)
T ss_pred HHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888873 3466777888888888888888888888888 5556 445677777788888888898888888888
Q ss_pred cCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhcc
Q 048364 348 MVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 348 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
.. | .++.++..+..++...|++++|+..+++..+.
T Consensus 672 l~-P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 672 GL-P-DDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred hC-C-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 88 8 78888888888888889999888888888753
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.8e-16 Score=149.26 Aligned_cols=335 Identities=10% Similarity=-0.014 Sum_probs=243.1
Q ss_pred CCCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCC--C-ChhhHHHHH
Q 048364 13 PSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPE--R-NAVTWNTMI 88 (400)
Q Consensus 13 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~--~-~~~~~~~l~ 88 (400)
+.+...+..+..++...|++++|.++|+..++..+. +...+..+...+ ..|++++|+..+++... | +.. +..+.
T Consensus 46 ~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la 123 (765)
T PRK10049 46 QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ-NDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALA 123 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHH
Confidence 334446888888888889999999999988875432 344555666666 88999999998888764 3 445 77778
Q ss_pred HHHHcCCChHHHHHHHhhCC--CC-ChhhHHHHHHHHHhcCCcchHHHHH------------------------------
Q 048364 89 KGYSKSGNVCEARDFFERMP--LR-NVASWSAMIAAYLNAGAYDPGLKLF------------------------------ 135 (400)
Q Consensus 89 ~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~a~~~~------------------------------ 135 (400)
.++...|+.++|+..++++. .| +...+..+..++...|..++|++.+
T Consensus 124 ~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~ 203 (765)
T PRK10049 124 YVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTR 203 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhccccc
Confidence 88888899999999988876 23 4455555666666556555444444
Q ss_pred ----------------HHHHhcCCCCCCHH-HHH----HHHHHhhcccchhhhhhhhhhhHHHhcccc-chHHHHHHHHH
Q 048364 136 ----------------REMISNEGLTPDQM-TIG----AVLSGCSHLGSVGLLMGKSAHGFIVKNEWE-LNEQIATILVD 193 (400)
Q Consensus 136 ----------------~~m~~~~~~~p~~~-~~~----~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~ 193 (400)
+.+.+.....|+.. .+. ..+.++...|+.++ |...++.+.+.+.+ |+. ....+..
T Consensus 204 ~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~e--A~~~~~~ll~~~~~~P~~-a~~~la~ 280 (765)
T PRK10049 204 SEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKD--VISEYQRLKAEGQIIPPW-AQRWVAS 280 (765)
T ss_pred ChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHH--HHHHHHHhhccCCCCCHH-HHHHHHH
Confidence 44432112223221 111 11334566788888 99999998887643 332 2233577
Q ss_pred HHHhcCCHHHHHHHHHhccCCCc-------ccHHHHHHHHHhCCChhhHHHHHHHHHHCCC-----------CCCH---H
Q 048364 194 MYAKCGFLKYALMVFELMEERNV-------ISWTALICGSAHRGYSEDALSLFEMMQATGV-----------KPNE---M 252 (400)
Q Consensus 194 ~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-----------~p~~---~ 252 (400)
+|...|++++|...|+++.+.+. .....+..++...|++++|..+++++..... .|+. .
T Consensus 281 ~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~ 360 (765)
T PRK10049 281 AYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQ 360 (765)
T ss_pred HHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHH
Confidence 89999999999999999865321 2355566788999999999999999987521 1232 3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCcc-HHHHHHHHHHHH
Q 048364 253 TFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPN-VIIWGSFLAACK 330 (400)
Q Consensus 253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~-~~~~~~l~~~~~ 330 (400)
.+..+...+...|+.++|++.++++.. ..+.+...+..+...+...|++++|++.+++. ...|+ ...+...+..+.
T Consensus 361 a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al 438 (765)
T PRK10049 361 GQSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTAL 438 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Confidence 455677788899999999999999985 34556788899999999999999999999998 66675 556677777899
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCCch
Q 048364 331 EHKQFDMAERVIKQALRMVKPENDGG 356 (400)
Q Consensus 331 ~~~~~~~a~~~~~~~~~~~~~~~~~~ 356 (400)
..|++++|+.+++++++.. | .++.
T Consensus 439 ~~~~~~~A~~~~~~ll~~~-P-d~~~ 462 (765)
T PRK10049 439 DLQEWRQMDVLTDDVVARE-P-QDPG 462 (765)
T ss_pred HhCCHHHHHHHHHHHHHhC-C-CCHH
Confidence 9999999999999999998 7 5543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.7e-15 Score=138.79 Aligned_cols=346 Identities=12% Similarity=0.057 Sum_probs=160.5
Q ss_pred cccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCCCChh-hHHHH--HHHHHcCCChHHHHH
Q 048364 27 THFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPERNAV-TWNTM--IKGYSKSGNVCEARD 102 (400)
Q Consensus 27 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~~~~-~~~~l--~~~~~~~~~~~~a~~ 102 (400)
.+.|+++.|++.|+++.+..+.....++ .++..+ ..|+.++|+..+++...|+.. .+..+ ...+...|++++|++
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aie 123 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALA 123 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 3556666666666666664332112233 555555 666666666666666654322 22222 334555566666666
Q ss_pred HHhhCCC--C-ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhc
Q 048364 103 FFERMPL--R-NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179 (400)
Q Consensus 103 ~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~ 179 (400)
+|+++.. | +...+..++..+...++.++|++.++++. ...|+...+..++..+...++... +...++.+.+.
T Consensus 124 ly~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~---~~dp~~~~~l~layL~~~~~~~~~--AL~~~ekll~~ 198 (822)
T PRK14574 124 LWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELA---ERDPTVQNYMTLSYLNRATDRNYD--ALQASSEAVRL 198 (822)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhc---ccCcchHHHHHHHHHHHhcchHHH--HHHHHHHHHHh
Confidence 6666552 2 34455555566666666666666666665 234444444333222322333333 45555554444
Q ss_pred cccchHHHHHHHHHHHHhcCCHHHHHHHHHhcc-----------------------------------------------
Q 048364 180 EWELNEQIATILVDMYAKCGFLKYALMVFELME----------------------------------------------- 212 (400)
Q Consensus 180 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------------------------------------------- 212 (400)
. +.+...+..+..+..+.|-...|.++..+-+
T Consensus 199 ~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l 277 (822)
T PRK14574 199 A-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNL 277 (822)
T ss_pred C-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHH
Confidence 3 1123333333333333333322222222111
Q ss_pred -C-----CCcc-cH----HHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhc
Q 048364 213 -E-----RNVI-SW----TALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEY 281 (400)
Q Consensus 213 -~-----~~~~-~~----~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 281 (400)
. |... .| --.+-++...|+..++++.|+.|...|.+....+-..+..+|...+++++|+.+++.+....
T Consensus 278 ~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~ 357 (822)
T PRK14574 278 LTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSD 357 (822)
T ss_pred HhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcc
Confidence 0 1000 00 01223344455555555555555555444334445555555555555555555555554321
Q ss_pred C----CCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc---------------cH-HHHHHHHHHHHhcCCHHHHHH
Q 048364 282 D----LEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP---------------NV-IIWGSFLAACKEHKQFDMAER 340 (400)
Q Consensus 282 ~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p---------------~~-~~~~~l~~~~~~~~~~~~a~~ 340 (400)
+ ..++......|.-+|...+++++|..+++++ ...| |- ..+..++..+.-.|+..+|++
T Consensus 358 ~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~ 437 (822)
T PRK14574 358 GKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQK 437 (822)
T ss_pred ccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 1 0112222344555555555555555555554 1011 11 112223444445555555555
Q ss_pred HHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHH
Q 048364 341 VIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLM 381 (400)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 381 (400)
.++++.... | .+......+...+...|.+.+|.+.++..
T Consensus 438 ~le~l~~~a-P-~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a 476 (822)
T PRK14574 438 KLEDLSSTA-P-ANQNLRIALASIYLARDLPRKAEQELKAV 476 (822)
T ss_pred HHHHHHHhC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 555555555 5 55555555555555555555555555443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-14 Score=137.17 Aligned_cols=352 Identities=11% Similarity=0.021 Sum_probs=255.7
Q ss_pred HHHHHhcccchhHHHHHHHHHHHHhCcccchh---hhhHHHHHH-HhCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHc
Q 048364 21 HILKSCTHFNNLTVIHHLHSHILKLGFISHVY---VATSLLHEY-VVTSFGFARKLFDELPE--R-NAVTWNTMIKGYSK 93 (400)
Q Consensus 21 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~-~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~ 93 (400)
.++..+...|+.++|+.++++.. .|+.. ....+...+ ..|++++|.++|+++.+ | +...+..++..+..
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~ 148 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQAD 148 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Confidence 78888888899999999999987 33222 222234466 77999999999999985 3 45667777888999
Q ss_pred CCChHHHHHHHhhCCCCCh--hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCC-HHHHHHHHHHhhcccchhhhhhh
Q 048364 94 SGNVCEARDFFERMPLRNV--ASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPD-QMTIGAVLSGCSHLGSVGLLMGK 170 (400)
Q Consensus 94 ~~~~~~a~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~a~ 170 (400)
.++.++|++.++++.+.++ ..+..++..+...++..+|++.++++. ...|+ ...+..+..+..+.|-... |.
T Consensus 149 ~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll---~~~P~n~e~~~~~~~~l~~~~~~~~--a~ 223 (822)
T PRK14574 149 AGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAV---RLAPTSEEVLKNHLEILQRNRIVEP--AL 223 (822)
T ss_pred cCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcCCcHH--HH
Confidence 9999999999999885443 344333334444566666999999998 23454 4444555555555543322 11
Q ss_pred hh------------------------------------------------hhHHHh-ccccchH-H----HHHHHHHHHH
Q 048364 171 SA------------------------------------------------HGFIVK-NEWELNE-Q----IATILVDMYA 196 (400)
Q Consensus 171 ~~------------------------------------------------~~~~~~-~~~~~~~-~----~~~~l~~~~~ 196 (400)
++ ++.+.. .+..|.. . ..--.+-++.
T Consensus 224 ~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~ 303 (822)
T PRK14574 224 RLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALL 303 (822)
T ss_pred HHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHH
Confidence 11 111111 1111211 1 1123345667
Q ss_pred hcCCHHHHHHHHHhccCCC----cccHHHHHHHHHhCCChhhHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCh
Q 048364 197 KCGFLKYALMVFELMEERN----VISWTALICGSAHRGYSEDALSLFEMMQATG-----VKPNEMTFTGVLTACVHTGLV 267 (400)
Q Consensus 197 ~~g~~~~A~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-----~~p~~~~~~~l~~~~~~~~~~ 267 (400)
..|++.++.+.|+.+..+. ..+-..+.++|...+++++|..+|+.+.... ..++......|.-++...+++
T Consensus 304 ~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~ 383 (822)
T PRK14574 304 VRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQL 383 (822)
T ss_pred HhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccH
Confidence 8899999999999998532 3355678899999999999999999997643 123444467899999999999
Q ss_pred hhHHHHHHHhhhhcCC----------CCCh---hhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhc
Q 048364 268 DEGRKYFKMIDEEYDL----------EPRI---QHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEH 332 (400)
Q Consensus 268 ~~a~~~~~~~~~~~~~----------~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 332 (400)
++|..+++.+.+.... .|+. ..+..++..+.-.|++.+|++.++++ ...| |......+...+...
T Consensus 384 ~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~R 463 (822)
T PRK14574 384 DKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLAR 463 (822)
T ss_pred HHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 9999999999852110 1221 23445677889999999999999999 4455 788899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 333 KQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 333 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
|.+.+|+..++.+.... | .+..+....+.++...|+|.+|..+.+...+
T Consensus 464 g~p~~A~~~~k~a~~l~-P-~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 464 DLPRKAEQELKAVESLA-P-RSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred CCHHHHHHHHHHHhhhC-C-ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 99999999999988887 8 8899999999999999999999888876643
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-14 Score=139.43 Aligned_cols=361 Identities=9% Similarity=-0.011 Sum_probs=263.8
Q ss_pred CCCCCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCC-C-----Chhh
Q 048364 11 SVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPE-R-----NAVT 83 (400)
Q Consensus 11 g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~-~-----~~~~ 83 (400)
.+.|.......-..+....+...++.+.+..|.+.... +....-.+.-.. ..|+.++|..+|+...+ + +...
T Consensus 337 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l 415 (987)
T PRK09782 337 ATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPA-NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTL 415 (987)
T ss_pred cCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHH
Confidence 35555554322222223446777788888888776332 222222222222 88889999999988775 2 2223
Q ss_pred HHHHHHHHHcCCC---hHHHHHH-------------------------HhhCC---CC--ChhhHHHHHHHHHhcCCcch
Q 048364 84 WNTMIKGYSKSGN---VCEARDF-------------------------FERMP---LR--NVASWSAMIAAYLNAGAYDP 130 (400)
Q Consensus 84 ~~~l~~~~~~~~~---~~~a~~~-------------------------~~~~~---~~--~~~~~~~l~~~~~~~g~~~~ 130 (400)
-+.++..|.+.+. ..++..+ +.... .+ +...|..+..++.. +++++
T Consensus 416 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~e 494 (987)
T PRK09782 416 MARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGV 494 (987)
T ss_pred HHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHH
Confidence 4466677776655 3333333 22222 22 55677888887776 89999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 048364 131 GLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFEL 210 (400)
Q Consensus 131 a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 210 (400)
|+..+.+.. ...|+......+...+...|+++. |...++.+... +|+...+..+..++.+.|+.++|...++.
T Consensus 495 Ai~a~~~Al---~~~Pd~~~~L~lA~al~~~Gr~ee--Ai~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~q 567 (987)
T PRK09782 495 ALYAWLQAE---QRQPDAWQHRAVAYQAYQVEDYAT--ALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQ 567 (987)
T ss_pred HHHHHHHHH---HhCCchHHHHHHHHHHHHCCCHHH--HHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999888877 334776554455556678999999 88888887554 33344566778889999999999999998
Q ss_pred ccCCCcccHHHHH---HHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCCh
Q 048364 211 MEERNVISWTALI---CGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRI 287 (400)
Q Consensus 211 ~~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 287 (400)
..+.++...+... ......|++++|...+++..+. .|+...+..+..++.+.|+.++|...+++... --+.+.
T Consensus 568 AL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~ 643 (987)
T PRK09782 568 AEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNS 643 (987)
T ss_pred HHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCH
Confidence 8875444443333 3344559999999999999876 56788899999999999999999999999985 234466
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHh
Q 048364 288 QHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLY 365 (400)
Q Consensus 288 ~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 365 (400)
..++.+..++...|++++|.+.+++. ...| +...+..+..++...|++++|+..++++++.. | .+..+........
T Consensus 644 ~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~-P-~~a~i~~~~g~~~ 721 (987)
T PRK09782 644 NYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI-D-NQALITPLTPEQN 721 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-C-CCchhhhhhhHHH
Confidence 78888999999999999999999988 5566 56688999999999999999999999999999 8 7888888889999
Q ss_pred hcccchHHHHHHHHHHhcccc
Q 048364 366 TMNEKWEGAERVRKLMLNQNV 386 (400)
Q Consensus 366 ~~~g~~~~a~~~~~~m~~~~~ 386 (400)
.+..+++.|.+-+++....++
T Consensus 722 ~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 722 QQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHHHHHHHHHHHhhcCc
Confidence 999999999998887765444
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.5e-14 Score=117.87 Aligned_cols=353 Identities=14% Similarity=0.102 Sum_probs=200.4
Q ss_pred ccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH---HhCCHHHH-HH-----------------------HHhhCCCCC
Q 048364 28 HFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY---VVTSFGFA-RK-----------------------LFDELPERN 80 (400)
Q Consensus 28 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~g~~~~a-~~-----------------------~~~~~~~~~ 80 (400)
..|.+..+.-+|+.|.+.|.+.+...-..++... ......-| .+ ++-+....+
T Consensus 127 S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PKT 206 (625)
T KOG4422|consen 127 SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPKT 206 (625)
T ss_pred hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCCC
Confidence 4567777777777777777665555544444432 11111110 11 222233346
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHHhhCCC----CChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 048364 81 AVTWNTMIKGYSKSGNVCEARDFFERMPL----RNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLS 156 (400)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~ 156 (400)
..+|.++|.++|+--..+.|.+++++-.. -+..+||.+|.+-.- ..-.++..+|. ...+.||..|+|++++
T Consensus 207 ~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMi-sqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 207 DETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMI-SQKMTPNLFTFNALLS 281 (625)
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHH-HhhcCCchHhHHHHHH
Confidence 67889999999999889999999988763 366778877764322 22277888888 7788899999999999
Q ss_pred Hhhcccchhh--hhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHH-HHHHHHhccC------------CCcccHHH
Q 048364 157 GCSHLGSVGL--LMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKY-ALMVFELMEE------------RNVISWTA 221 (400)
Q Consensus 157 ~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~------------~~~~~~~~ 221 (400)
+.++.|+++. ..+.+++.+|++.|++|...+|.-++..+++.++..+ |..++.++.. .|...|..
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 8888886654 2356778888888999988888888888888777644 4444444331 12333444
Q ss_pred HHHHHHhCCChhhHHHHHHHHHHCC----CCCCH---HHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHH
Q 048364 222 LICGSAHRGYSEDALSLFEMMQATG----VKPNE---MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMV 294 (400)
Q Consensus 222 l~~~~~~~~~~~~a~~~~~~m~~~~----~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 294 (400)
.+..|....+.+-|.++-.-+.... +.|+. ..|..+....|+....+.....|+.|.-. -.-|+..+...++
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~-~y~p~~~~m~~~l 440 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPS-AYFPHSQTMIHLL 440 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-eecCCchhHHHHH
Confidence 5555555555555544433222110 12221 22344444444444445455555544421 3334444444444
Q ss_pred HHHHhcCChHHHHHHHHhc---------------------------------------------------------cCCc
Q 048364 295 DLFGKAGFLEEAYEVIRTM---------------------------------------------------------RLEP 317 (400)
Q Consensus 295 ~~~~~~g~~~~a~~~~~~~---------------------------------------------------------~~~p 317 (400)
++....|.++-.-+++..+ ...-
T Consensus 441 rA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~ 520 (625)
T KOG4422|consen 441 RALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDW 520 (625)
T ss_pred HHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccC
Confidence 4444444444333333332 1111
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--C-CCCchHHHHHHHHhhcccchHHHHHHHHHHhcccc
Q 048364 318 NVIIWGSFLAACKEHKQFDMAERVIKQALRMVK--P-ENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNV 386 (400)
Q Consensus 318 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 386 (400)
.....+...-.+.+.|+.++|.+++.-..+.+. | .|...+...++..-...++...|..+++-|...++
T Consensus 521 ~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 521 PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 233344455556677777777777777654442 1 02222333455555566667777777776655444
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-16 Score=135.73 Aligned_cols=256 Identities=16% Similarity=0.151 Sum_probs=111.8
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHH-HHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHH
Q 048364 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTI-GAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYA 196 (400)
Q Consensus 118 l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 196 (400)
+...+.+.|++++|++++++.. ....+|+...| ..+...+...++.+. +...++.+...+.. ++..+..++.. .
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~-~~~~~~~~~~~~~~~a~La~~~~~~~~--A~~ay~~l~~~~~~-~~~~~~~l~~l-~ 88 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAA-QKIAPPDDPEYWRLLADLAWSLGDYDE--AIEAYEKLLASDKA-NPQDYERLIQL-L 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccc-ccccccccccccccccccccccccccc--cccccccccccccc-ccccccccccc-c
Confidence 3455556666666666664433 11112333332 333334445556666 66666666555433 44555566666 6
Q ss_pred hcCCHHHHHHHHHhccC--CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChhhHHHH
Q 048364 197 KCGFLKYALMVFELMEE--RNVISWTALICGSAHRGYSEDALSLFEMMQATG-VKPNEMTFTGVLTACVHTGLVDEGRKY 273 (400)
Q Consensus 197 ~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~ 273 (400)
..+++++|.+++...-+ +++..+..++..+...++++++..+++++.... .+++...|..+...+.+.|+.++|...
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 89 QDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 78888888888876643 566677788888999999999999999987543 345677788888899999999999999
Q ss_pred HHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc--cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048364 274 FKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM--RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKP 351 (400)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 351 (400)
+++..+. .+.+......++..+...|+.+++.++++.. ..+.|...+..+..+|...|+.++|...+++..+.. |
T Consensus 169 ~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 169 YRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 9999953 2335778888999999999999988888877 223455677889999999999999999999999988 8
Q ss_pred CCCchHHHHHHHHhhcccchHHHHHHHHHHh
Q 048364 352 ENDGGVFTLICDLYTMNEKWEGAERVRKLML 382 (400)
Q Consensus 352 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 382 (400)
.|+.+...++.++...|+.++|.++.++..
T Consensus 246 -~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 246 -DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -T-HHHHHHHHHHHT----------------
T ss_pred -cccccccccccccccccccccccccccccc
Confidence 899999999999999999999999887664
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.5e-13 Score=122.39 Aligned_cols=314 Identities=13% Similarity=0.131 Sum_probs=209.0
Q ss_pred HhCCHHHHHHHHhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHhhC---CCCChhhHHHHHHHHHhcCCcchHHHHH
Q 048364 62 VVTSFGFARKLFDELPE---RNAVTWNTMIKGYSKSGNVCEARDFFERM---PLRNVASWSAMIAAYLNAGAYDPGLKLF 135 (400)
Q Consensus 62 ~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 135 (400)
..|++++|.+++.++.. .+...|.+|...|-+.|+.+++...+-.. .+.|...|..+.....+.|++++|.-.|
T Consensus 151 arg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 45666666666666653 24455666666666666666666554332 2335566666666666666666666666
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHH----HHHHHHHHhcCCHHHHHHHHHhc
Q 048364 136 REMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA----TILVDMYAKCGFLKYALMVFELM 211 (400)
Q Consensus 136 ~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~ 211 (400)
.+.++. -+++...+---...|-+.|+... |...+..+.....+.+..-+ -..++.|...++-+.|.+.++..
T Consensus 231 ~rAI~~--~p~n~~~~~ers~L~~~~G~~~~--Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 231 SRAIQA--NPSNWELIYERSSLYQKTGDLKR--AMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHhc--CCcchHHHHHHHHHHHHhChHHH--HHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 666611 12333344444555666666666 66666666555443232222 22344555566667777777665
Q ss_pred cC-----CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCC---------------------------CCCHHHHHHHHH
Q 048364 212 EE-----RNVISWTALICGSAHRGYSEDALSLFEMMQATGV---------------------------KPNEMTFTGVLT 259 (400)
Q Consensus 212 ~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---------------------------~p~~~~~~~l~~ 259 (400)
.. -+...++.++..|.+..+++.|......+..... .++... --+.-
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~i 385 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMI 385 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhh
Confidence 54 2445677777788888888888777777665211 222222 12223
Q ss_pred HHHhcCChhhHHHHHHHhhhhcCC--CCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCC--ccHHHHHHHHHHHHhcCC
Q 048364 260 ACVHTGLVDEGRKYFKMIDEEYDL--EPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLE--PNVIIWGSFLAACKEHKQ 334 (400)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~--p~~~~~~~l~~~~~~~~~ 334 (400)
++......+....+...+..+ .. ..+...|.-+..+|...|++.+|+.+|..+ ... .+...|-.+..+|...|.
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence 344555555555566666533 43 335678999999999999999999999999 222 256789999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 335 FDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 335 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
+++|.+.++.++... | .+..+-..|...+...|+.++|.+.+..+..
T Consensus 465 ~e~A~e~y~kvl~~~-p-~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~ 511 (895)
T KOG2076|consen 465 YEEAIEFYEKVLILA-P-DNLDARITLASLYQQLGNHEKALETLEQIIN 511 (895)
T ss_pred HHHHHHHHHHHHhcC-C-CchhhhhhHHHHHHhcCCHHHHHHHHhcccC
Confidence 999999999999999 8 8999999999999999999999999998873
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.5e-13 Score=125.59 Aligned_cols=115 Identities=10% Similarity=0.142 Sum_probs=70.1
Q ss_pred hhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc--cCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048364 267 VDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM--RLEPNVIIWGSFLAACKEHKQFDMAERVIKQ 344 (400)
Q Consensus 267 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 344 (400)
.++|+++|.+..+ .-+-|...-|-+.-.++..|++.+|..+|... ....+..+|-.+..+|+..|++..|+++|+.
T Consensus 628 ~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~ 705 (1018)
T KOG2002|consen 628 QEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYEN 705 (1018)
T ss_pred HHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHH
Confidence 4556666665553 22335555555666666666666776666666 1122334566666677777777777777776
Q ss_pred HHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 345 ALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 345 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
..+...+..++.+...|.+++.+.|.+.+|.+.+.....
T Consensus 706 ~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 706 CLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred HHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 666655556666667777777777777666666555443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.7e-13 Score=120.50 Aligned_cols=276 Identities=12% Similarity=0.029 Sum_probs=201.2
Q ss_pred HhCCHHHHHHHHhhCCCC--Chhh-HHHHHHHHHcCCChHHHHHHHhhCCC--CChhhHH--HHHHHHHhcCCcchHHHH
Q 048364 62 VVTSFGFARKLFDELPER--NAVT-WNTMIKGYSKSGNVCEARDFFERMPL--RNVASWS--AMIAAYLNAGAYDPGLKL 134 (400)
Q Consensus 62 ~~g~~~~a~~~~~~~~~~--~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~--~l~~~~~~~g~~~~a~~~ 134 (400)
..|+++.|.+.+....+. ++.. |........+.|+++.|.+.|.++.+ |+...+. .....+...|++++|.+.
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred hCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 567888888777766543 2222 22223344677888888888877663 3332222 225567778888888888
Q ss_pred HHHHHhcCCCCC-CHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchH-------HHHHHHHHHHHhcCCHHHHHH
Q 048364 135 FREMISNEGLTP-DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNE-------QIATILVDMYAKCGFLKYALM 206 (400)
Q Consensus 135 ~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~ 206 (400)
++++. ...| +...+..+...+.+.|+++. +..++..+.+.+..++. ..|..++.......+.+...+
T Consensus 176 l~~~~---~~~P~~~~al~ll~~~~~~~gdw~~--a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 176 VDKLL---EVAPRHPEVLRLAEQAYIRTGAWSS--LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHH---hcCCCCHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 88876 2234 34566677777888888888 88888877776644322 244455555555666777788
Q ss_pred HHHhccC---CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCC
Q 048364 207 VFELMEE---RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDL 283 (400)
Q Consensus 207 ~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 283 (400)
+++.+.+ .++.....+...+...|+.++|.+++++..+. .|+... .++.+....++.+++.+..+...++ .
T Consensus 251 ~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~--~ 324 (398)
T PRK10747 251 WWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ--H 324 (398)
T ss_pred HHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh--C
Confidence 8887765 46778888999999999999999999998874 445432 2344445669999999999999864 3
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048364 284 EPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM 348 (400)
Q Consensus 284 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 348 (400)
+.|...+..+.+.+.+.|++++|.+.|+.. ...|+...+..+...+.+.|+.++|.+++++....
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 456677888999999999999999999999 77899999999999999999999999999998764
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.6e-14 Score=124.13 Aligned_cols=272 Identities=13% Similarity=0.029 Sum_probs=131.7
Q ss_pred HHHHHHHHhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHhhCCC--C----ChhhHHHHHHHHHhcCCcchHHHHHH
Q 048364 66 FGFARKLFDELPE--R-NAVTWNTMIKGYSKSGNVCEARDFFERMPL--R----NVASWSAMIAAYLNAGAYDPGLKLFR 136 (400)
Q Consensus 66 ~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~----~~~~~~~l~~~~~~~g~~~~a~~~~~ 136 (400)
..+|...|+.+++ + +......+..+|...+++++|.++|+.+.. | +...|.+.+--+.+ +-++..+.
T Consensus 335 ~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~La 410 (638)
T KOG1126|consen 335 CREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYLA 410 (638)
T ss_pred HHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHHH
Confidence 3556666666443 1 223444555666666666666666666542 1 44555555543322 22222222
Q ss_pred HHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCc
Q 048364 137 EMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNV 216 (400)
Q Consensus 137 ~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 216 (400)
+-+ -..-+-.+.+|.++-++|+-.++.+. |.+.|+.....+. -...+|+.+..-+.....+|.|...|+.....|+
T Consensus 411 q~L-i~~~~~sPesWca~GNcfSLQkdh~~--Aik~f~RAiQldp-~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 411 QDL-IDTDPNSPESWCALGNCFSLQKDHDT--AIKCFKRAIQLDP-RFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHH-HhhCCCCcHHHHHhcchhhhhhHHHH--HHHHHHHhhccCC-ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 211 00111122334333333333333333 3333333322210 0233444444444555556666666666665555
Q ss_pred ccHHH---HHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCC-ChhhHHH
Q 048364 217 ISWTA---LICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP-RIQHYGC 292 (400)
Q Consensus 217 ~~~~~---l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~ 292 (400)
..||+ +.-.|.+.++++.|+-.|++..+-+. -+.+....+...+.+.|+.++|+++++++.. +.| |+..--.
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP-~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~---ld~kn~l~~~~ 562 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINP-SNSVILCHIGRIQHQLKRKDKALQLYEKAIH---LDPKNPLCKYH 562 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCc-cchhHHhhhhHHHHHhhhhhHHHHHHHHHHh---cCCCCchhHHH
Confidence 54444 33455666666666666665555421 1334444455555556666666666666552 222 2222233
Q ss_pred HHHHHHhcCChHHHHHHHHhc-cCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 293 MVDLFGKAGFLEEAYEVIRTM-RLEPN-VIIWGSFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 293 l~~~~~~~g~~~~a~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
.+..+...+++++|+..++++ .+.|+ ...|-.+.+.|.+.|+.+.|+.-|-.+.+.+
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 444555566666666666666 44443 3345555556666666666666666666655
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.3e-12 Score=111.58 Aligned_cols=358 Identities=11% Similarity=0.065 Sum_probs=226.6
Q ss_pred HHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHcCCChHH
Q 048364 24 KSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPE--R-NAVTWNTMIKGYSKSGNVCE 99 (400)
Q Consensus 24 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~ 99 (400)
..|.+.+.++-|..+|...++--+ .+..+|..+..+- ..|..+....+|++... | ....|-....-+...|++..
T Consensus 524 ~~~~k~~~~~carAVya~alqvfp-~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ 602 (913)
T KOG0495|consen 524 QSCEKRPAIECARAVYAHALQVFP-CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPA 602 (913)
T ss_pred HHHHhcchHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHH
Confidence 333334444444444444443211 1233344333333 44444444444444432 1 22333333444455566666
Q ss_pred HHHHHhhCC---CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHH
Q 048364 100 ARDFFERMP---LRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI 176 (400)
Q Consensus 100 a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~ 176 (400)
|..++...- ..+...|-+-+..-..+.++++|..+|.+.. +..|+...|.--++.-.-.+..++ |.++++..
T Consensus 603 ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar---~~sgTeRv~mKs~~~er~ld~~ee--A~rllEe~ 677 (913)
T KOG0495|consen 603 ARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKAR---SISGTERVWMKSANLERYLDNVEE--ALRLLEEA 677 (913)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHh---ccCCcchhhHHHhHHHHHhhhHHH--HHHHHHHH
Confidence 666665543 2244566666666666667777777776665 345555555544444455556666 66666555
Q ss_pred HhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC--CCc-ccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHH
Q 048364 177 VKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE--RNV-ISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMT 253 (400)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 253 (400)
++.- +.-...|..+...+-+.++.+.|...|..-.+ |+. ..|-.+...--+.|++-.|..++++.+-.+.+ +...
T Consensus 678 lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~l 755 (913)
T KOG0495|consen 678 LKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALL 755 (913)
T ss_pred HHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchh
Confidence 5442 22344566666677777777777777666554 433 34555555556667777777777776665432 5666
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhccCCccHHHHHHHHHHHHhcC
Q 048364 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHK 333 (400)
Q Consensus 254 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~ 333 (400)
|...|+.-.+.|+.+.|..++.+... .++.+...|..-|....+.++-.+..+.+++. ..|....-.+...+....
T Consensus 756 wle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkc--e~dphVllaia~lfw~e~ 831 (913)
T KOG0495|consen 756 WLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC--EHDPHVLLAIAKLFWSEK 831 (913)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhc--cCCchhHHHHHHHHHHHH
Confidence 77777777777777777777777764 44556666776676666666666666666654 346667777788888889
Q ss_pred CHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhccccccccCcccccc
Q 048364 334 QFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISS 397 (400)
Q Consensus 334 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ 397 (400)
++++|...|.+.+..+ | +...+|..+...+.+.|.-++-.+++++... -.|+.|..|..+
T Consensus 832 k~~kar~Wf~Ravk~d-~-d~GD~wa~fykfel~hG~eed~kev~~~c~~--~EP~hG~~W~av 891 (913)
T KOG0495|consen 832 KIEKAREWFERAVKKD-P-DNGDAWAWFYKFELRHGTEEDQKEVLKKCET--AEPTHGELWQAV 891 (913)
T ss_pred HHHHHHHHHHHHHccC-C-ccchHHHHHHHHHHHhCCHHHHHHHHHHHhc--cCCCCCcHHHHH
Confidence 9999999999999999 8 8899999999999999999999999998876 568888888765
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-12 Score=116.55 Aligned_cols=276 Identities=12% Similarity=0.084 Sum_probs=213.5
Q ss_pred cCCChHHHHHHHhhCCCC--Ch-hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHH--HHHHHhhcccchhhh
Q 048364 93 KSGNVCEARDFFERMPLR--NV-ASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIG--AVLSGCSHLGSVGLL 167 (400)
Q Consensus 93 ~~~~~~~a~~~~~~~~~~--~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~--~ll~~~~~~~~~~~~ 167 (400)
-.|+++.|.+.+...... ++ ..|.....+..+.|+++.|.+.+.++. ...|+..... .....+...|+++.
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~---~~~~~~~~~~~l~~a~l~l~~g~~~~- 171 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAA---ELADNDQLPVEITRVRIQLARNENHA- 171 (398)
T ss_pred hCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCcchHHHHHHHHHHHHHCCCHHH-
Confidence 379999999999876543 23 334344555689999999999999998 4467765443 33567889999999
Q ss_pred hhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCc-----------ccHHHHHHHHHhCCChhhHH
Q 048364 168 MGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNV-----------ISWTALICGSAHRGYSEDAL 236 (400)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~a~ 236 (400)
|...++.+.+.. +-++.+...+...|.+.|++++|.+++..+.+... .+|..++.......+.+...
T Consensus 172 -Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~ 249 (398)
T PRK10747 172 -ARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLK 249 (398)
T ss_pred -HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 999999998877 44678888999999999999999999999886322 13333444444455566677
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cC
Q 048364 237 SLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RL 315 (400)
Q Consensus 237 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~ 315 (400)
++++.+.+. .+.+......+..++...|+.++|.+++++..+. +|+.... ++.+....++.+++.+..++. ..
T Consensus 250 ~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~ 323 (398)
T PRK10747 250 RWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ 323 (398)
T ss_pred HHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh
Confidence 777766443 3447778888999999999999999999998852 4454322 334445669999999999988 44
Q ss_pred Cc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 316 EP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 316 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
.| |...+..+...|.+.+++++|.+.|++..+.. | +...+..+..++.+.|+.++|.+++++-..
T Consensus 324 ~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~-P--~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 324 HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR-P--DAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 56 45567889999999999999999999999988 5 778889999999999999999999987754
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.3e-14 Score=124.30 Aligned_cols=279 Identities=15% Similarity=0.090 Sum_probs=216.2
Q ss_pred CCChHHHHHHHhhCCC--CCh-hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCC-CHHHHHHHHHHhhcccchhhhhh
Q 048364 94 SGNVCEARDFFERMPL--RNV-ASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTP-DQMTIGAVLSGCSHLGSVGLLMG 169 (400)
Q Consensus 94 ~~~~~~a~~~~~~~~~--~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~~~a 169 (400)
.=+..+|+..|...+. +|. .....+..+|...+++++|.++|+.+.+...... +..+|.+.+.-+-+.- +
T Consensus 332 ~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v------~ 405 (638)
T KOG1126|consen 332 QYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV------A 405 (638)
T ss_pred HHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH------H
Confidence 3456889999988552 233 4455678899999999999999999984333222 4567888877654322 2
Q ss_pred hhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCC---CcccHHHHHHHHHhCCChhhHHHHHHHHHHCC
Q 048364 170 KSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEER---NVISWTALICGSAHRGYSEDALSLFEMMQATG 246 (400)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 246 (400)
...+..-.-..-+..+.+|.++.++|.-+++.+.|++.|++..+- ...+|+.+..-+.....+|.|...|+..+..
T Consensus 406 Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~- 484 (638)
T KOG1126|consen 406 LSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV- 484 (638)
T ss_pred HHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC-
Confidence 222222222223456889999999999999999999999999874 4568888888889999999999999987653
Q ss_pred CCCC-HHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHH
Q 048364 247 VKPN-EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP-RIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIW 322 (400)
Q Consensus 247 ~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~ 322 (400)
.|. -..|-.+...|.+.++++.|+-.|+++. .+.| +......++..+.+.|+.++|++++++. -..| |...-
T Consensus 485 -~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~ 560 (638)
T KOG1126|consen 485 -DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCK 560 (638)
T ss_pred -CchhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhH
Confidence 222 2345567778999999999999999998 4455 5667778888999999999999999998 4444 44444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhccc
Q 048364 323 GSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQN 385 (400)
Q Consensus 323 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 385 (400)
-.-+..+...+++++|...++++.+.- | .+..++..++..|.+.|+.+.|+.-|.-+.+..
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~v-P-~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKELV-P-QESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHhC-c-chHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 455677888899999999999999998 8 899999999999999999999998887776643
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.4e-12 Score=107.51 Aligned_cols=357 Identities=13% Similarity=0.142 Sum_probs=254.9
Q ss_pred cccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCC--CCh-hhHHHHHHHHHcCCChHHHHH
Q 048364 27 THFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPE--RNA-VTWNTMIKGYSKSGNVCEARD 102 (400)
Q Consensus 27 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~a~~ 102 (400)
...+++..|..+|+.++... ..+...|...+.+- ++..+..|..+++.... |.+ ..|--.+..--..|++..|.+
T Consensus 84 esq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHH
Confidence 34567888888998887755 33666777777777 88888889888888764 322 234444444556788888888
Q ss_pred HHhhCC--CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhc-
Q 048364 103 FFERMP--LRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN- 179 (400)
Q Consensus 103 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~- 179 (400)
+|++-. +|+..+|++.|..-.+-+.++.|..+|+..+ -+.|++.+|.-..+.--+.|.... +..++..+.+.
T Consensus 163 iferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV---~~HP~v~~wikyarFE~k~g~~~~--aR~VyerAie~~ 237 (677)
T KOG1915|consen 163 IFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFV---LVHPKVSNWIKYARFEEKHGNVAL--ARSVYERAIEFL 237 (677)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHh---eecccHHHHHHHHHHHHhcCcHHH--HHHHHHHHHHHh
Confidence 888744 7888889888888888888889999998887 567888888888887778887777 77777766542
Q ss_pred c-ccchHHHHHHHHHHHHhcCCHHHHHHHHHhcc--------------------------------------------CC
Q 048364 180 E-WELNEQIATILVDMYAKCGFLKYALMVFELME--------------------------------------------ER 214 (400)
Q Consensus 180 ~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------------------------------------------~~ 214 (400)
| -..+...+.+....=.++..++.|.-+|+-.. +.
T Consensus 238 ~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 238 GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 1 12233444444444444555555555443222 11
Q ss_pred ---CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHH-------HHHHHHHHH---HhcCChhhHHHHHHHhhhhc
Q 048364 215 ---NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEM-------TFTGVLTAC---VHTGLVDEGRKYFKMIDEEY 281 (400)
Q Consensus 215 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-------~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~ 281 (400)
|-.+|-..+..-...|+.+...++|++.... ++|-.. .|.-+=-+| ....+.+.+.++|+...+
T Consensus 318 np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-- 394 (677)
T KOG1915|consen 318 NPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-- 394 (677)
T ss_pred CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--
Confidence 3345666666667789999999999998876 555321 222222222 346788889999988884
Q ss_pred CCCCChhhHHHHHHHH----HhcCChHHHHHHHHhc-cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCch
Q 048364 282 DLEPRIQHYGCMVDLF----GKAGFLEEAYEVIRTM-RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGG 356 (400)
Q Consensus 282 ~~~~~~~~~~~l~~~~----~~~g~~~~a~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 356 (400)
-++....||.-+--.| .++.++..|.+++-.. |.-|...+|...|..-.+.++++.+..++++.++.+ | .+..
T Consensus 395 lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-P-e~c~ 472 (677)
T KOG1915|consen 395 LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-P-ENCY 472 (677)
T ss_pred hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-h-HhhH
Confidence 4444556665544443 4778899999998877 888988999888888889999999999999999988 8 7888
Q ss_pred HHHHHHHHhhcccchHHHHHHHHHHhccccccccCccc
Q 048364 357 VFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSV 394 (400)
Q Consensus 357 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 394 (400)
++...+..-...|+++.|..+|+-.+++.....|..-|
T Consensus 473 ~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellw 510 (677)
T KOG1915|consen 473 AWSKYAELETSLGDTDRARAIFELAISQPALDMPELLW 510 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH
Confidence 88888888888899999999998888776655555443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-12 Score=110.64 Aligned_cols=203 Identities=13% Similarity=0.101 Sum_probs=161.6
Q ss_pred cccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHhCCChhhHH
Q 048364 160 HLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE---RNVISWTALICGSAHRGYSEDAL 236 (400)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 236 (400)
..|+++. |...+.+.+...-.-....|| +.-.+-..|++++|+..|-++.. .+......+.+.|....++.+|+
T Consensus 502 ~ngd~dk--a~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqai 578 (840)
T KOG2003|consen 502 ANGDLDK--AAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAI 578 (840)
T ss_pred ecCcHHH--HHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHH
Confidence 3566677 777777777665444444444 33446678899999988877654 56667777888888899999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cC
Q 048364 237 SLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RL 315 (400)
Q Consensus 237 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~ 315 (400)
+++-+.... ++.|+.....|...|-+.|+-.+|.+.+-.--+ -++.+..+..-|...|....-++++..+|++. -+
T Consensus 579 e~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaali 655 (840)
T KOG2003|consen 579 ELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALI 655 (840)
T ss_pred HHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc
Confidence 998776554 555778888999999999999999887765542 44567888888888999999999999999998 67
Q ss_pred CccHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccc
Q 048364 316 EPNVIIWGSFLAACK-EHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEK 370 (400)
Q Consensus 316 ~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 370 (400)
.|+..-|..++..|. +.|++.+|..+++...++. | .+......|++.+...|-
T Consensus 656 qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkf-p-edldclkflvri~~dlgl 709 (840)
T KOG2003|consen 656 QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKF-P-EDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-c-cchHHHHHHHHHhccccc
Confidence 899999999887664 7899999999999999998 8 899999999999987764
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.4e-15 Score=127.73 Aligned_cols=252 Identities=13% Similarity=0.070 Sum_probs=64.9
Q ss_pred HHHHHhcccchhHHHHHHHHHHHHhCccc-chhhhhHHHHHH-HhCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHcCC
Q 048364 21 HILKSCTHFNNLTVIHHLHSHILKLGFIS-HVYVATSLLHEY-VVTSFGFARKLFDELPER---NAVTWNTMIKGYSKSG 95 (400)
Q Consensus 21 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~ 95 (400)
.+...+.+.|++++|+++++.......+| +...|..+.... ..++++.|...++++... +...+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 44666677788888888775544433223 333444444444 777777777777777653 23345555555 5677
Q ss_pred ChHHHHHHHhhCC--CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhh
Q 048364 96 NVCEARDFFERMP--LRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAH 173 (400)
Q Consensus 96 ~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~ 173 (400)
++++|.+++...- .++...+..++..+.+.++++++.++++.+......+++...|..+...+.+.|+.+. |...+
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~--A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDK--ALRDY 169 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHH--HHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHH--HHHHH
Confidence 7777777766543 2345555666666777777777777777765333333444455555555555555555 55555
Q ss_pred hHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC
Q 048364 174 GFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE---RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPN 250 (400)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 250 (400)
+...+.... +..+...++..+...|+.+++.++++...+ .|+..+..+..++...|+.++|+..|++..+.. +.|
T Consensus 170 ~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d 247 (280)
T PF13429_consen 170 RKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDD 247 (280)
T ss_dssp HHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-
T ss_pred HHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-ccc
Confidence 555444321 334444455555555555554444433332 234444445555555555555555555544431 224
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHh
Q 048364 251 EMTFTGVLTACVHTGLVDEGRKYFKMI 277 (400)
Q Consensus 251 ~~~~~~l~~~~~~~~~~~~a~~~~~~~ 277 (400)
......+..++...|+.++|.++..++
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 444444555555555555555544443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.5e-12 Score=107.08 Aligned_cols=313 Identities=12% Similarity=0.066 Sum_probs=217.2
Q ss_pred HhCCHHHHHHHHhhCCCCChhhHHHHHHHHHcCCChHHHHHHHhhCCCCChh-hHHHHHHHHHhcCCcchHHHHHHHHHh
Q 048364 62 VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVA-SWSAMIAAYLNAGAYDPGLKLFREMIS 140 (400)
Q Consensus 62 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~ 140 (400)
+.|..+.|+..|......-+..|.+-+....-..+.+.+..+.......+.. .=--+..++....+.++++.=.+...
T Consensus 176 ~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~- 254 (559)
T KOG1155|consen 176 ELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQKKERLS- 254 (559)
T ss_pred hhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 5555555666555555433334444333333333333333322222211111 11123345555566777777776666
Q ss_pred cCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhcccc--chHHHHHHHHHHHHhcCCHHH-HHHHHHhccCCCcc
Q 048364 141 NEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE--LNEQIATILVDMYAKCGFLKY-ALMVFELMEERNVI 217 (400)
Q Consensus 141 ~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~ 217 (400)
..|++-+...-+....+.-...++++ |...|+.+.+...- -|..+|..++-.-....++.- |..++ .+.+--+.
T Consensus 255 ~~gf~~~~~i~~~~A~~~y~~rDfD~--a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~-~idKyR~E 331 (559)
T KOG1155|consen 255 SVGFPNSMYIKTQIAAASYNQRDFDQ--AESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVS-NIDKYRPE 331 (559)
T ss_pred hccCCccHHHHHHHHHHHhhhhhHHH--HHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHH-HhccCCcc
Confidence 55655555555555555667778888 88888888887421 255666665533222222222 22222 23333566
Q ss_pred cHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHH
Q 048364 218 SWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297 (400)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 297 (400)
|+.++.+-|.-.++.++|...|++..+.+.. ....|+.+.+-|....+...|.+-++.+.+ -.+.|-..|-.|.++|
T Consensus 332 TCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQaY 408 (559)
T KOG1155|consen 332 TCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQAY 408 (559)
T ss_pred ceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHHH
Confidence 7777888889999999999999999887432 456788888899999999999999999994 3344788999999999
Q ss_pred HhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHH
Q 048364 298 GKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAE 375 (400)
Q Consensus 298 ~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 375 (400)
.-.+.+.-|+-.|++. .++| |...|.+|..+|.+.++.++|++.|.++...+ . .+...+..|+..|.+.++.++|.
T Consensus 409 eim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-d-te~~~l~~LakLye~l~d~~eAa 486 (559)
T KOG1155|consen 409 EIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-D-TEGSALVRLAKLYEELKDLNEAA 486 (559)
T ss_pred HHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-c-cchHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999 6677 77899999999999999999999999999998 5 57899999999999999999999
Q ss_pred HHHHHHhc
Q 048364 376 RVRKLMLN 383 (400)
Q Consensus 376 ~~~~~m~~ 383 (400)
..+++.++
T Consensus 487 ~~yek~v~ 494 (559)
T KOG1155|consen 487 QYYEKYVE 494 (559)
T ss_pred HHHHHHHH
Confidence 99988775
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.8e-12 Score=114.65 Aligned_cols=279 Identities=11% Similarity=0.009 Sum_probs=167.8
Q ss_pred HhCCHHHHHHHHhhCCC--CCh-hhHHHHHHHHHcCCChHHHHHHHhhCC--CCCh--hhHHHHHHHHHhcCCcchHHHH
Q 048364 62 VVTSFGFARKLFDELPE--RNA-VTWNTMIKGYSKSGNVCEARDFFERMP--LRNV--ASWSAMIAAYLNAGAYDPGLKL 134 (400)
Q Consensus 62 ~~g~~~~a~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~--~~~~~l~~~~~~~g~~~~a~~~ 134 (400)
..|+++.|.+.+.+..+ |+. ..+-....+..+.|+.+.|.+.|++.. .|+. .........+...|+++.|.+.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 77888888888877664 222 223344456677788888888888753 2332 2333456777788888888888
Q ss_pred HHHHHhcCCCCC-CHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHH---Hh----cCCHHHHHH
Q 048364 135 FREMISNEGLTP-DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMY---AK----CGFLKYALM 206 (400)
Q Consensus 135 ~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~----~g~~~~A~~ 206 (400)
++.+.+. .| +...+..+...+...|+++. +...+..+.+.+..+.......-..++ .. ....+...+
T Consensus 176 l~~l~~~---~P~~~~~l~ll~~~~~~~~d~~~--a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 176 VDKLLEM---APRHKEVLKLAEEAYIRSGAWQA--LDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHh---CCCCHHHHHHHHHHHHHHhhHHH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 8888722 34 44566777777888888888 777787777776443322211111111 11 222233344
Q ss_pred HHHhccC---CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHH--H-HHHHHHHHhcCChhhHHHHHHHhhhh
Q 048364 207 VFELMEE---RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMT--F-TGVLTACVHTGLVDEGRKYFKMIDEE 280 (400)
Q Consensus 207 ~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~-~~l~~~~~~~~~~~~a~~~~~~~~~~ 280 (400)
.++...+ .++..+..++..+...|+.++|.+++++..+.. ||... + ..........++.+.+.+.++...+.
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 4444433 255666677777777777777777777777652 33321 1 11111123345666667777666643
Q ss_pred cCCCCChhhHHHHHHHHHhcCChHHHHHHHHh--c-cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048364 281 YDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRT--M-RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALR 347 (400)
Q Consensus 281 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~--~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (400)
..-.|+.....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++|.+++++...
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22222114455667777777777777777773 2 5567776677777777777777777777776544
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.6e-12 Score=116.13 Aligned_cols=287 Identities=13% Similarity=0.013 Sum_probs=203.2
Q ss_pred HHHHHHHhc--ccchhHHHHHHHHHHHHhCcccchhhh-hHHHHHH-HhCCHHHHHHHHhhCCC--CCh--hhHHHHHHH
Q 048364 19 ILHILKSCT--HFNNLTVIHHLHSHILKLGFISHVYVA-TSLLHEY-VVTSFGFARKLFDELPE--RNA--VTWNTMIKG 90 (400)
Q Consensus 19 ~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~-~~g~~~~a~~~~~~~~~--~~~--~~~~~l~~~ 90 (400)
...+.++.. ..|+++.|.+.+....+.. |+...+ -....+. ..|+.+.|.+.+++..+ |+. ...-.....
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l 162 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRI 162 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHH
Confidence 334444443 4789999999998877754 443333 3334445 88999999999998753 443 233445788
Q ss_pred HHcCCChHHHHHHHhhCC--CC-ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHh---hcccch
Q 048364 91 YSKSGNVCEARDFFERMP--LR-NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGC---SHLGSV 164 (400)
Q Consensus 91 ~~~~~~~~~a~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~---~~~~~~ 164 (400)
+...|+++.|.+.++.+. .| +...+..+...+.+.|++++|.+++..+. +.++.++.........++ ...+..
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~-k~~~~~~~~~~~l~~~a~~~~l~~~~~ 241 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMA-KAGLFDDEEFADLEQKAEIGLLDEAMA 241 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999987 23 67788899999999999999999999998 554433322211111221 222222
Q ss_pred hhhhhhhhhhHHHhccc---cchHHHHHHHHHHHHhcCCHHHHHHHHHhccC--CCccc---HHHHHHHHHhCCChhhHH
Q 048364 165 GLLMGKSAHGFIVKNEW---ELNEQIATILVDMYAKCGFLKYALMVFELMEE--RNVIS---WTALICGSAHRGYSEDAL 236 (400)
Q Consensus 165 ~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~---~~~l~~~~~~~~~~~~a~ 236 (400)
+. +...+..+.+... ..++..+..+...+...|+.++|.+++++..+ ||... ...........++.+.+.
T Consensus 242 ~~--~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~ 319 (409)
T TIGR00540 242 DE--GIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLE 319 (409)
T ss_pred hc--CHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHH
Confidence 22 3334444444332 13778888999999999999999999999886 44332 122223334457788899
Q ss_pred HHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc
Q 048364 237 SLFEMMQATGVKPNE---MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313 (400)
Q Consensus 237 ~~~~~m~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 313 (400)
+.+++..+. .|+. ....++...+.+.|++++|.+.|+... .....|+...+..+...+.+.|+.++|.+++++.
T Consensus 320 ~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~-a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 320 KLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVA-ACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhH-HhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 988887765 3433 456688899999999999999999543 2245788888999999999999999999999975
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.3e-12 Score=114.95 Aligned_cols=354 Identities=14% Similarity=0.105 Sum_probs=259.6
Q ss_pred HHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCC---CCChhhHHHHHHHHHcCCChHH
Q 048364 24 KSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELP---ERNAVTWNTMIKGYSKSGNVCE 99 (400)
Q Consensus 24 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 99 (400)
..+.-.|+.++|.+++.++++..+. +...|-.|...| ..|+.+++...+-..- ..|...|-.+.....+.|++++
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHH
Confidence 3334459999999999999997644 566788899999 9999999998765443 4477889999999999999999
Q ss_pred HHHHHhhCCCC---ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCC-CH-----HHHHHHHHHhhcccchhhhhhh
Q 048364 100 ARDFFERMPLR---NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTP-DQ-----MTIGAVLSGCSHLGSVGLLMGK 170 (400)
Q Consensus 100 a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~-----~~~~~ll~~~~~~~~~~~~~a~ 170 (400)
|.-.|.+..+. +...+---+..|.+.|+...|.+.|.++. ...| .. ...-.+++.+...++-+. |.
T Consensus 226 A~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~---~~~p~~d~er~~d~i~~~~~~~~~~~~~e~--a~ 300 (895)
T KOG2076|consen 226 ARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLL---QLDPPVDIERIEDLIRRVAHYFITHNERER--AA 300 (895)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHH---hhCCchhHHHHHHHHHHHHHHHHHhhHHHH--HH
Confidence 99999998743 43444445678999999999999999998 2233 21 233344566777777766 66
Q ss_pred hhhhHHHh-ccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC----C----------------------CcccHH---
Q 048364 171 SAHGFIVK-NEWELNEQIATILVDMYAKCGFLKYALMVFELMEE----R----------------------NVISWT--- 220 (400)
Q Consensus 171 ~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~----------------------~~~~~~--- 220 (400)
+.++.... .+-..+...++.++..|.+...++.|......... + +...|.
T Consensus 301 ~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v 380 (895)
T KOG2076|consen 301 KALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV 380 (895)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh
Confidence 66555544 33445666788899999999999999887765542 1 111111
Q ss_pred -HHHHHHHhCCChhhHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHH
Q 048364 221 -ALICGSAHRGYSEDALSLFEMMQATGVKP--NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297 (400)
Q Consensus 221 -~l~~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 297 (400)
.++-++...+..+....+...+....+.| +...|.-+..++.+.|++.+|..+|..+... ...-+...|-.+.++|
T Consensus 381 ~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~-~~~~~~~vw~~~a~c~ 459 (895)
T KOG2076|consen 381 IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR-EGYQNAFVWYKLARCY 459 (895)
T ss_pred HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC-ccccchhhhHHHHHHH
Confidence 22334445555555555566666665433 4567889999999999999999999999853 3333567899999999
Q ss_pred HhcCChHHHHHHHHhc-cCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-------CCCCchHHHHHHHHhhcc
Q 048364 298 GKAGFLEEAYEVIRTM-RLEPN-VIIWGSFLAACKEHKQFDMAERVIKQALRMVK-------PENDGGVFTLICDLYTMN 368 (400)
Q Consensus 298 ~~~g~~~~a~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~ 368 (400)
...|.++.|.+.|... ...|+ ...--.|...+.+.|+.++|.+.++.+..-+. ..++..........+...
T Consensus 460 ~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~ 539 (895)
T KOG2076|consen 460 MELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQV 539 (895)
T ss_pred HHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHh
Confidence 9999999999999998 66664 44556677889999999999999998653220 225566667777888899
Q ss_pred cchHHHHHHHHHHhcc
Q 048364 369 EKWEGAERVRKLMLNQ 384 (400)
Q Consensus 369 g~~~~a~~~~~~m~~~ 384 (400)
|+.++-..+...|++.
T Consensus 540 gk~E~fi~t~~~Lv~~ 555 (895)
T KOG2076|consen 540 GKREEFINTASTLVDD 555 (895)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 9998877776666543
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.5e-11 Score=100.26 Aligned_cols=360 Identities=13% Similarity=0.127 Sum_probs=244.0
Q ss_pred CCCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCCCChhhHHHHHHHH
Q 048364 13 PSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPERNAVTWNTMIKGY 91 (400)
Q Consensus 13 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~ 91 (400)
+-+..||..+|.++++-...+.|.+++++......+.+..++|.+|.+- -.-+-+..-++...-..||..|+|+++.+.
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisqkm~Pnl~TfNalL~c~ 283 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVAEMISQKMTPNLFTFNALLSCA 283 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHHHHHHhhcCCchHhHHHHHHHH
Confidence 5578899999999999999999999999988877788889999999887 333333333333333468999999999999
Q ss_pred HcCCChHHHHH----HHhhCC----CCChhhHHHHHHHHHhcCCcch-HHHHHHHHHh---cCCCCC----CHHHHHHHH
Q 048364 92 SKSGNVCEARD----FFERMP----LRNVASWSAMIAAYLNAGAYDP-GLKLFREMIS---NEGLTP----DQMTIGAVL 155 (400)
Q Consensus 92 ~~~~~~~~a~~----~~~~~~----~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~---~~~~~p----~~~~~~~ll 155 (400)
.+.|+++.|.+ ++.+|+ +|...+|..+|..+.+.++..+ |..++.++.. ...++| |..-|..-+
T Consensus 284 akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM 363 (625)
T KOG4422|consen 284 AKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAM 363 (625)
T ss_pred HHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHH
Confidence 99998876654 445554 7888999999999988887754 5555555542 112233 344577788
Q ss_pred HHhhcccchhhhhhhhhhhHHHhcc----ccch---HHHHHHHHHHHHhcCCHHHHHHHHHhccC----CCcccHHHHHH
Q 048364 156 SGCSHLGSVGLLMGKSAHGFIVKNE----WELN---EQIATILVDMYAKCGFLKYALMVFELMEE----RNVISWTALIC 224 (400)
Q Consensus 156 ~~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~ 224 (400)
..|.+..+.+. |..+........ +.|+ ..-|..+..+.|.....+.-...|+.|.- |+..+...+++
T Consensus 364 ~Ic~~l~d~~L--A~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr 441 (625)
T KOG4422|consen 364 SICSSLRDLEL--AYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR 441 (625)
T ss_pred HHHHHhhhHHH--HHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH
Confidence 88888888887 888777665432 1222 23345666777788888888888888874 67777778888
Q ss_pred HHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-Ch--------hh-----HHHH-------HHHhhhhcCC
Q 048364 225 GSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTG-LV--------DE-----GRKY-------FKMIDEEYDL 283 (400)
Q Consensus 225 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-~~--------~~-----a~~~-------~~~~~~~~~~ 283 (400)
+..-.|.++-.-+++.+++..|-..+...-.-++..+++.. .. .. |..+ -.++. ..
T Consensus 442 A~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r---~~ 518 (625)
T KOG4422|consen 442 ALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQR---AQ 518 (625)
T ss_pred HHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHH---hc
Confidence 88888999888888888888764444333333333333322 11 00 1111 12222 22
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHhc-------cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCch
Q 048364 284 EPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-------RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGG 356 (400)
Q Consensus 284 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 356 (400)
..+....+.+.-.+.+.|..++|.++|..+ ...|.......++....+.++...|...++-|...+.| .-..
T Consensus 519 ~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~-~~E~ 597 (625)
T KOG4422|consen 519 DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP-ICEG 597 (625)
T ss_pred cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch-hhhH
Confidence 334556777778899999999999999877 23344444556677778889999999999999888744 2222
Q ss_pred HHHHHHHHhhcccchHHHHHHH
Q 048364 357 VFTLICDLYTMNEKWEGAERVR 378 (400)
Q Consensus 357 ~~~~l~~~~~~~g~~~~a~~~~ 378 (400)
.-..+...|.-+....+++.=+
T Consensus 598 La~RI~e~f~iNqeq~~~ls~l 619 (625)
T KOG4422|consen 598 LAQRIMEDFAINQEQKEALSNL 619 (625)
T ss_pred HHHHHHHhcCcCHHHHHHHhhh
Confidence 4445555555444444444433
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.8e-12 Score=118.81 Aligned_cols=365 Identities=12% Similarity=0.091 Sum_probs=225.1
Q ss_pred chhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCC--C-ChhhHHHHHHHH
Q 048364 16 SFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPE--R-NAVTWNTMIKGY 91 (400)
Q Consensus 16 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~ 91 (400)
..+|-.+.+++-..|++++|..+|.+..+.....-+..+--+...+ +.|+++.+...|+.+.. | +..+.-.+...|
T Consensus 307 aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Ly 386 (1018)
T KOG2002|consen 307 AESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLY 386 (1018)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHH
Confidence 4568889999999999999999998877754332233445567777 99999999999999874 3 445566666666
Q ss_pred HcCC----ChHHHHHHHhhCCCC---ChhhHHHHHHHHHhcCCcchHHHHHHHHH---hcCCCCCCHHHHHHHHHHhhcc
Q 048364 92 SKSG----NVCEARDFFERMPLR---NVASWSAMIAAYLNAGAYDPGLKLFREMI---SNEGLTPDQMTIGAVLSGCSHL 161 (400)
Q Consensus 92 ~~~~----~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~---~~~~~~p~~~~~~~ll~~~~~~ 161 (400)
+..+ ..+.|..++.....+ |..+|-.+...+.+..-+ .++.+|.... ...+-.+.....|.+...+...
T Consensus 387 a~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~ 465 (1018)
T KOG2002|consen 387 AHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRL 465 (1018)
T ss_pred HhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHh
Confidence 6654 456677776665533 555666666655554333 3355554332 1233345566777777777777
Q ss_pred cchhhhhhhhhhhHHHhc---ccc------chHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCc---ccHHHHHHHHHhC
Q 048364 162 GSVGLLMGKSAHGFIVKN---EWE------LNEQIATILVDMYAKCGFLKYALMVFELMEERNV---ISWTALICGSAHR 229 (400)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~---~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~ 229 (400)
|.++. |...+...... ... ++..+-..+..++-..++++.|.+.|..+.+..+ ..|-.++......
T Consensus 466 g~~~~--A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k 543 (1018)
T KOG2002|consen 466 GNIEK--ALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDK 543 (1018)
T ss_pred cChHH--HHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhc
Confidence 77777 77777666554 111 2222334455666666777777777777765222 2333333333344
Q ss_pred CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHh----------
Q 048364 230 GYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK---------- 299 (400)
Q Consensus 230 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------- 299 (400)
+...+|...+.+..... ..++..+..+...+.+...+..|.+-|+.+.++....+|+.+.-+|...|..
T Consensus 544 ~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~e 622 (1018)
T KOG2002|consen 544 NNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPE 622 (1018)
T ss_pred cCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChH
Confidence 56666777776665542 2233344445555666666666666666555543334555555555554432
Q ss_pred --cCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHH
Q 048364 300 --AGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAE 375 (400)
Q Consensus 300 --~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 375 (400)
.+..++|+++|.+. ...| |.+.-|-+.-+++..|++.+|..+|.++.+.. . ....+|..++++|...|+|-.|+
T Consensus 623 k~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~-~~~dv~lNlah~~~e~~qy~~AI 700 (1018)
T KOG2002|consen 623 KEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-S-DFEDVWLNLAHCYVEQGQYRLAI 700 (1018)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHH-h-hCCceeeeHHHHHHHHHHHHHHH
Confidence 23566777777766 4444 55666666667777777777777777777766 3 45667777777777777777777
Q ss_pred HHHHHHhcccc
Q 048364 376 RVRKLMLNQNV 386 (400)
Q Consensus 376 ~~~~~m~~~~~ 386 (400)
+.|+...+...
T Consensus 701 qmYe~~lkkf~ 711 (1018)
T KOG2002|consen 701 QMYENCLKKFY 711 (1018)
T ss_pred HHHHHHHHHhc
Confidence 77776655433
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.60 E-value=7e-12 Score=106.66 Aligned_cols=353 Identities=11% Similarity=0.035 Sum_probs=241.7
Q ss_pred HHHHHHHhcccchhHHHHHHHHHHHHhCcccc-hhhhhHHHHHH-HhCCHHHHHHHHhhCCCCCh---hhHHHHHHHHHc
Q 048364 19 ILHILKSCTHFNNLTVIHHLHSHILKLGFISH-VYVATSLLHEY-VVTSFGFARKLFDELPERNA---VTWNTMIKGYSK 93 (400)
Q Consensus 19 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~ 93 (400)
+....+-|-+.|.+++|.++|.+.++ ..|+ +..|.....+| ..|+++++.+.-.+..+-++ ..+..-..++-.
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQ 195 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHh
Confidence 34445567788999999999999998 4567 66778888888 99999999988777765333 233444445555
Q ss_pred CCChHHHHHH----------------------HhhC---------C---C---CChh-----------------------
Q 048364 94 SGNVCEARDF----------------------FERM---------P---L---RNVA----------------------- 113 (400)
Q Consensus 94 ~~~~~~a~~~----------------------~~~~---------~---~---~~~~----------------------- 113 (400)
.|++++|+.- ++.. . . |+..
T Consensus 196 lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~k 275 (606)
T KOG0547|consen 196 LGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDK 275 (606)
T ss_pred hccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCcc
Confidence 5555555432 1110 1 1 1111
Q ss_pred hHHHHHHHHHh--cC---CcchHHHHHHHHHhcCCCCCCHH-----------HHHHHHHHhhcccchhhhhhhhhhhHHH
Q 048364 114 SWSAMIAAYLN--AG---AYDPGLKLFREMISNEGLTPDQM-----------TIGAVLSGCSHLGSVGLLMGKSAHGFIV 177 (400)
Q Consensus 114 ~~~~l~~~~~~--~g---~~~~a~~~~~~m~~~~~~~p~~~-----------~~~~ll~~~~~~~~~~~~~a~~~~~~~~ 177 (400)
++..+..++.. .+ .+..|.+.+.+-.......++.. +....-..+.-.|+.-. +..-++...
T Consensus 276 sDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~--a~~d~~~~I 353 (606)
T KOG0547|consen 276 SDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLG--AQEDFDAAI 353 (606)
T ss_pred chhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchh--hhhhHHHHH
Confidence 11111111111 11 23344443333221111122221 11111112334556666 777777777
Q ss_pred hccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHH
Q 048364 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE---RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTF 254 (400)
Q Consensus 178 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 254 (400)
+....++. .|--+..+|....+.++..+.|++..+ .|+.+|..-.+.+.-.+++++|..=|++..... +-+...|
T Consensus 354 ~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~ 431 (606)
T KOG0547|consen 354 KLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAY 431 (606)
T ss_pred hcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHH
Confidence 77654433 266677789999999999999998876 467788888888888999999999999988763 2245667
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCcc---------HHHHHH
Q 048364 255 TGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPN---------VIIWGS 324 (400)
Q Consensus 255 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~---------~~~~~~ 324 (400)
..+.-+.-+.+++++++..|++.++ .++..+.+|+.....+..++++++|.+.|+.. .+.|+ ..+-..
T Consensus 432 iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka 509 (606)
T KOG0547|consen 432 IQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKA 509 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhh
Confidence 7777777789999999999999997 56667889999999999999999999999987 55554 112222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHh
Q 048364 325 FLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLML 382 (400)
Q Consensus 325 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 382 (400)
++..-.+ +++..|..+++++++.+ | ....+|..|...-...|+.++|+++|++..
T Consensus 510 ~l~~qwk-~d~~~a~~Ll~KA~e~D-p-kce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 510 LLVLQWK-EDINQAENLLRKAIELD-P-KCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred Hhhhchh-hhHHHHHHHHHHHHccC-c-hHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 2322233 89999999999999999 8 788999999999999999999999999765
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.3e-12 Score=103.91 Aligned_cols=291 Identities=14% Similarity=0.107 Sum_probs=184.8
Q ss_pred HHHHHHhCCHHHHHHHHhhCCCCChhhH---HHHHHHHHcCCChHHHHHHHhhCC-CCCh------hhHHHHHHHHHhcC
Q 048364 57 LLHEYVVTSFGFARKLFDELPERNAVTW---NTMIKGYSKSGNVCEARDFFERMP-LRNV------ASWSAMIAAYLNAG 126 (400)
Q Consensus 57 l~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~-~~~~------~~~~~l~~~~~~~g 126 (400)
-++.+-+++.++|..+|-+|.+-|+.++ -+|.+.|-+.|..|.|+++-+.+. .||. .+...|..-|...|
T Consensus 42 GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aG 121 (389)
T COG2956 42 GLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAG 121 (389)
T ss_pred HHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhh
Confidence 3333355566666666666665444333 345556666666666666666544 3322 12334455566666
Q ss_pred CcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHH
Q 048364 127 AYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALM 206 (400)
Q Consensus 127 ~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 206 (400)
-+|.|.++|..+. +.+ +.-.....-|+..|-...+|++|.+
T Consensus 122 l~DRAE~~f~~L~--------------------------------------de~-efa~~AlqqLl~IYQ~treW~KAId 162 (389)
T COG2956 122 LLDRAEDIFNQLV--------------------------------------DEG-EFAEGALQQLLNIYQATREWEKAID 162 (389)
T ss_pred hhhHHHHHHHHHh--------------------------------------cch-hhhHHHHHHHHHHHHHhhHHHHHHH
Confidence 6666666666665 221 1112233446677777777777777
Q ss_pred HHHhccCCCcc--------cHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhh
Q 048364 207 VFELMEERNVI--------SWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMID 278 (400)
Q Consensus 207 ~~~~~~~~~~~--------~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 278 (400)
+-+++.+.+.. .|.-+...+....+.+.|..++.+..+.+.+ ....--.+.+.....|+++.|.+.++.+.
T Consensus 163 ~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~ 241 (389)
T COG2956 163 VAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVL 241 (389)
T ss_pred HHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHH
Confidence 77666553322 3444555555677888888888888776322 22233345567788889999999888888
Q ss_pred hhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchH
Q 048364 279 EEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357 (400)
Q Consensus 279 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 357 (400)
++ +..--+.+...|..+|...|+.++...++.++ ...+....-..+...-....-.+.|...+.+-+... |+...
T Consensus 242 eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~---Pt~~g 317 (389)
T COG2956 242 EQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRK---PTMRG 317 (389)
T ss_pred Hh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhC---CcHHH
Confidence 54 44444567778888899999999988888887 444555555555555555666777888887777776 48888
Q ss_pred HHHHHHHhh---cccchHHHHHHHHHHhccccccccC
Q 048364 358 FTLICDLYT---MNEKWEGAERVRKLMLNQNVRKARG 391 (400)
Q Consensus 358 ~~~l~~~~~---~~g~~~~a~~~~~~m~~~~~~~~~~ 391 (400)
+..++..-. ..|.+.+....++.|+...++..|.
T Consensus 318 f~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~ 354 (389)
T COG2956 318 FHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPR 354 (389)
T ss_pred HHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCC
Confidence 888887765 3456777888888888776666554
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.8e-11 Score=100.63 Aligned_cols=277 Identities=15% Similarity=0.073 Sum_probs=199.6
Q ss_pred HhCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHcCCChHHHHHHHhhCCCC----ChhhHHHHHHHHHhcCCcchHHHH
Q 048364 62 VVTSFGFARKLFDELPER---NAVTWNTMIKGYSKSGNVCEARDFFERMPLR----NVASWSAMIAAYLNAGAYDPGLKL 134 (400)
Q Consensus 62 ~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~ 134 (400)
-.|++..|++...+..+. ....|..-..+.-+.|+.+.+-..+.+..++ +...+-+..+.....|+++.|..-
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 567777777777665432 2233444445566677777777777776543 233455556667777777777777
Q ss_pred HHHHHhcCCCCC-CHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchH-------HHHHHHHHHHHhcCCHHHHHH
Q 048364 135 FREMISNEGLTP-DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNE-------QIATILVDMYAKCGFLKYALM 206 (400)
Q Consensus 135 ~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~ 206 (400)
.+++. ...| .........++|.+.|++.. ...+...+.+.+.-.+. .++..+++-....+..+.-..
T Consensus 176 v~~ll---~~~pr~~~vlrLa~r~y~~~g~~~~--ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~ 250 (400)
T COG3071 176 VDQLL---EMTPRHPEVLRLALRAYIRLGAWQA--LLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKT 250 (400)
T ss_pred HHHHH---HhCcCChHHHHHHHHHHHHhccHHH--HHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 77776 2223 34556667777777777777 77777777776654332 355666666666666666666
Q ss_pred HHHhccC---CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCC
Q 048364 207 VFELMEE---RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDL 283 (400)
Q Consensus 207 ~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 283 (400)
.++..+. .++..-.+++.-+...|+.++|.++..+..+.+..|+ ....-.+.+.++.+.-++..++..+.++.
T Consensus 251 ~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~ 326 (400)
T COG3071 251 WWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPE 326 (400)
T ss_pred HHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCC
Confidence 7777764 4677777888889999999999999999988877766 22233466778888888888888765544
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 284 EPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 284 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
.| ..+..|...|.+.+.+.+|.+.|+.. ...|+..+|+.+..++.+.|+..+|.+..++....-
T Consensus 327 ~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 327 DP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred Ch--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 44 67888999999999999999999977 788999999999999999999999999999888655
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.2e-10 Score=98.62 Aligned_cols=359 Identities=14% Similarity=0.097 Sum_probs=243.6
Q ss_pred CCCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCCCChhhH-HHHHHH
Q 048364 13 PSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPERNAVTW-NTMIKG 90 (400)
Q Consensus 13 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~~~~~~-~~l~~~ 90 (400)
.-|...+-.-.-.+...|....|.+.|...... -+..|.+-+... ..-+.+.+..+-...+..+...- --+..+
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a 236 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKA 236 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHH
Confidence 334444444444445667777777777665432 234555555555 44555555544444443221111 123345
Q ss_pred HHcCCChHHHHHHHhhCCC---C-ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCC-CHHHHHHHHHHhhcccchh
Q 048364 91 YSKSGNVCEARDFFERMPL---R-NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTP-DQMTIGAVLSGCSHLGSVG 165 (400)
Q Consensus 91 ~~~~~~~~~a~~~~~~~~~---~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~ 165 (400)
+....+.+++..-.+.... | +...-+....+.-...++++|+.+|+++.+...-+. |..+|+.++-+-....++.
T Consensus 237 ~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs 316 (559)
T KOG1155|consen 237 YQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLS 316 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHH
Confidence 5556677777666555442 2 222223333445567799999999999984432222 4567777664433222221
Q ss_pred hhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCC---cccHHHHHHHHHhCCChhhHHHHHHHH
Q 048364 166 LLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERN---VISWTALICGSAHRGYSEDALSLFEMM 242 (400)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m 242 (400)
++..-.-.--..-+.|+..+.+-|+-.++.++|...|++..+-| ...|+.+..-|...++...|+.-|+..
T Consensus 317 ------~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 317 ------YLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred ------HHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 11111111112345677888899999999999999999998743 467889999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc--cCCccHH
Q 048364 243 QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM--RLEPNVI 320 (400)
Q Consensus 243 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~p~~~ 320 (400)
.+-. +-|-..|-.|.++|.-.+...=|.-+|++..+ -.+.|...|.+|.++|.+.++.++|.+.|... .-..+..
T Consensus 391 vdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~ 467 (559)
T KOG1155|consen 391 VDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGS 467 (559)
T ss_pred HhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchH
Confidence 8863 44778999999999999999999999999983 23447899999999999999999999999998 2234668
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCC-CCchHHHHHHHHhhcccchHHHHHHHHHHhcc
Q 048364 321 IWGSFLAACKEHKQFDMAERVIKQALRMV----KPE-NDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 321 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
.+..+.+.|-+.++.++|...+++.++.. ... ....+...|...+.+.+++++|..+.......
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 89999999999999999999998877622 110 23445555777788999999998876665544
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.4e-11 Score=102.62 Aligned_cols=254 Identities=12% Similarity=0.092 Sum_probs=174.0
Q ss_pred HHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhc-ccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcC
Q 048364 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSH-LGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCG 199 (400)
Q Consensus 121 ~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 199 (400)
-+.+.|+++.|+++++-+.++..-..+...-+...--+.+ -.++.. |..+-+..+... .-++...+.-.......|
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~--aqqyad~aln~d-ryn~~a~~nkgn~~f~ng 504 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFAD--AQQYADIALNID-RYNAAALTNKGNIAFANG 504 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhH--HHHHHHHHhccc-ccCHHHhhcCCceeeecC
Confidence 4677888888888888776322211121111111111221 223333 444444333322 112222222233344579
Q ss_pred CHHHHHHHHHhccCCCcccHHHHH---HHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHH
Q 048364 200 FLKYALMVFELMEERNVISWTALI---CGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKM 276 (400)
Q Consensus 200 ~~~~A~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 276 (400)
++++|.+.|++....|...-.+|. -.+-..|+.++|++.|-++..- +.-+......+...|....+..+|++++.+
T Consensus 505 d~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q 583 (840)
T KOG2003|consen 505 DLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQ 583 (840)
T ss_pred cHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 999999999999887665444433 3567789999999999877543 233667777888889999999999999988
Q ss_pred hhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC
Q 048364 277 IDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEND 354 (400)
Q Consensus 277 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 354 (400)
... -++.|+...+.|...|-+.|+-..|.+..-+- +.-| +..+..-|..-|....-+++++.+|+++--.. | +
T Consensus 584 ~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliq-p--~ 658 (840)
T KOG2003|consen 584 ANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ-P--N 658 (840)
T ss_pred hcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC-c--c
Confidence 863 55668889999999999999999999887665 4444 67777778888888888999999999987766 5 5
Q ss_pred chHHHHH-HHHhhcccchHHHHHHHHHHhc
Q 048364 355 GGVFTLI-CDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 355 ~~~~~~l-~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
..-|..+ ..++.+.|++.+|.++++....
T Consensus 659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 5555544 4566789999999999988764
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.9e-12 Score=103.43 Aligned_cols=199 Identities=14% Similarity=0.036 Sum_probs=165.5
Q ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHH
Q 048364 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEE--R-NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVL 258 (400)
Q Consensus 182 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 258 (400)
......+..+...|...|++++|...+++..+ | +...+..+...+...|++++|.+.+++..+.. +.+...+..+.
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~ 106 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYG 106 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 33466778889999999999999999998765 3 35567788889999999999999999998764 33556778888
Q ss_pred HHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHH
Q 048364 259 TACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFD 336 (400)
Q Consensus 259 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~ 336 (400)
..+...|++++|.+.++..............+..+..++...|++++|.+.+++. ...| +...+..+...+...|+++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHH
Confidence 8999999999999999999853222334556777888999999999999999988 4444 4567888899999999999
Q ss_pred HHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 337 MAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 337 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
+|...+++..+.. | .++..+..++..+...|+.++|..+.+.+..
T Consensus 187 ~A~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 187 DARAYLERYQQTY-N-QTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999986 6 6788888889999999999999998887754
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.8e-10 Score=94.52 Aligned_cols=363 Identities=11% Similarity=0.099 Sum_probs=235.6
Q ss_pred CchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCC--CCChhhHHHHHHHH
Q 048364 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELP--ERNAVTWNTMIKGY 91 (400)
Q Consensus 15 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~--~~~~~~~~~l~~~~ 91 (400)
+...|..-+..=.+...+..|..+++.++..-+..|..-| ..+.+- ..|++..|.++|+... +|+...|++.|+.-
T Consensus 106 ~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy-KY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fE 184 (677)
T KOG1915|consen 106 NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY-KYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFE 184 (677)
T ss_pred cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH-HHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 4444555555556666777777777776665433333322 233333 6677777777777665 47777777777777
Q ss_pred HcCCChHHHHHHHhhCC--CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCC-CHHHHHHHHHHhhcccchhhhh
Q 048364 92 SKSGNVCEARDFFERMP--LRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTP-DQMTIGAVLSGCSHLGSVGLLM 168 (400)
Q Consensus 92 ~~~~~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~~~ 168 (400)
.+.+.++.|..+|++.. .|++.+|--....-.+.|+...|..+|+.....-|-.- +...+.+...--.+...++.
T Consensus 185 lRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ER-- 262 (677)
T KOG1915|consen 185 LRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYER-- 262 (677)
T ss_pred HHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 77777777777777643 56666666666666666666666666665542111100 01112222211122222222
Q ss_pred hhhhhhHHHhc-------------------------------------------cccchHHHHHHHHHHHHhcCCHHHHH
Q 048364 169 GKSAHGFIVKN-------------------------------------------EWELNEQIATILVDMYAKCGFLKYAL 205 (400)
Q Consensus 169 a~~~~~~~~~~-------------------------------------------~~~~~~~~~~~l~~~~~~~g~~~~A~ 205 (400)
|..++...++. .-+.|-.+|--.+..-...|+.+...
T Consensus 263 ar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ir 342 (677)
T KOG1915|consen 263 ARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIR 342 (677)
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHH
Confidence 22222222110 11224445555666666789999999
Q ss_pred HHHHhccC--CCc---ccHHHHH--------HHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHH----HhcCChh
Q 048364 206 MVFELMEE--RNV---ISWTALI--------CGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTAC----VHTGLVD 268 (400)
Q Consensus 206 ~~~~~~~~--~~~---~~~~~l~--------~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~----~~~~~~~ 268 (400)
++|++... |.. ..|...| -.-....+.+.+.++|+..++. ++....||..+=-.| .++.++.
T Consensus 343 e~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~ 421 (677)
T KOG1915|consen 343 ETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLT 421 (677)
T ss_pred HHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccH
Confidence 99998875 221 1222211 1123578899999999999884 444557776554443 4678999
Q ss_pred hHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048364 269 EGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQAL 346 (400)
Q Consensus 269 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 346 (400)
.|.+++.... |.-|...+|...|..=.+.++++.+..++++. ...| |-.+|......-...|+.+.|..+|+-++
T Consensus 422 ~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi 498 (677)
T KOG1915|consen 422 GARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAI 498 (677)
T ss_pred HHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 9999999988 88899999999999999999999999999998 6667 66788888888889999999999999998
Q ss_pred HcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhcc
Q 048364 347 RMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 347 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
+..........+...+..-...|.++.|..+++++.+.
T Consensus 499 ~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 499 SQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred cCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 87632122334555555556889999999999999864
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-11 Score=112.57 Aligned_cols=246 Identities=12% Similarity=0.083 Sum_probs=162.3
Q ss_pred HhhHHHHhCCCCCCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCCCC
Q 048364 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPERN 80 (400)
Q Consensus 2 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~~ 80 (400)
+++-.|+..|+.|+..||..+|..|+..|+.+.|- +|.-|.-.....+...++.++... ..++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 46788999999999999999999999999999999 999998877777888899999888 888877665 788
Q ss_pred hhhHHHHHHHHHcCCChHH---HHHHHhhCC---------CC-------------ChhhHHHHHHHHHhcCCcchHHHHH
Q 048364 81 AVTWNTMIKGYSKSGNVCE---ARDFFERMP---------LR-------------NVASWSAMIAAYLNAGAYDPGLKLF 135 (400)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~---a~~~~~~~~---------~~-------------~~~~~~~l~~~~~~~g~~~~a~~~~ 135 (400)
..+|..+..+|.+.||+.. +.+.+..+. .+ ....-...+....-.|.++.+++++
T Consensus 83 aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll 162 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLL 162 (1088)
T ss_pred hhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999765 222111111 00 0001112233344445566666665
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCC-
Q 048364 136 REMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEER- 214 (400)
Q Consensus 136 ~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 214 (400)
..+.......|... +++-+...... .+++....+...-.+++.++..++++-..+|+.+.|..++.+|.+.
T Consensus 163 ~~~Pvsa~~~p~~v----fLrqnv~~ntp----vekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~g 234 (1088)
T KOG4318|consen 163 AKVPVSAWNAPFQV----FLRQNVVDNTP----VEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKG 234 (1088)
T ss_pred hhCCcccccchHHH----HHHHhccCCch----HHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcC
Confidence 55432222222221 24443333322 4444444443333577777777777777788888888888777763
Q ss_pred ---CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048364 215 ---NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGL 266 (400)
Q Consensus 215 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 266 (400)
+..-|..++-+ .++...+..+++-|.+.|+.|+..|+...+-.+.+.|.
T Consensus 235 fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 235 FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred CCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 23334444433 67777777777777777888888777777766666443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-10 Score=94.39 Aligned_cols=293 Identities=11% Similarity=0.084 Sum_probs=209.6
Q ss_pred hHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCC-CCh------hhHHHHHH
Q 048364 18 SILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPE-RNA------VTWNTMIK 89 (400)
Q Consensus 18 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~-~~~------~~~~~l~~ 89 (400)
.|-.=++.+. .+++++|.++|-+|.+.... +..+.-++-+.| ..|..|.|+++.+.+.+ ||. .....|..
T Consensus 38 ~Yv~GlNfLL-s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~ 115 (389)
T COG2956 38 DYVKGLNFLL-SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGR 115 (389)
T ss_pred HHHhHHHHHh-hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Confidence 4444444443 45899999999999984322 445666777888 99999999999999875 442 23445667
Q ss_pred HHHcCCChHHHHHHHhhCCCCC---hhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhh
Q 048364 90 GYSKSGNVCEARDFFERMPLRN---VASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGL 166 (400)
Q Consensus 90 ~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 166 (400)
-|...|-+|.|.++|..+...+ ..+...|+..|.+..+|++|+++-+++. ..+-. +++.-|
T Consensus 116 Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~-k~~~q----~~~~eI----------- 179 (389)
T COG2956 116 DYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLV-KLGGQ----TYRVEI----------- 179 (389)
T ss_pred HHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHH-HcCCc----cchhHH-----------
Confidence 7888999999999999988643 3467778999999999999999999988 32222 222111
Q ss_pred hhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCc---ccHHHHHHHHHhCCChhhHHHHHHHHH
Q 048364 167 LMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNV---ISWTALICGSAHRGYSEDALSLFEMMQ 243 (400)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~ 243 (400)
...|..|...+....+.+.|..++.+..+.|+ ..--.+...+...|+++.|.+.++...
T Consensus 180 ------------------AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~ 241 (389)
T COG2956 180 ------------------AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVL 241 (389)
T ss_pred ------------------HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHH
Confidence 12344455566667788889999988876433 334445678889999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHH-hccCCccHHHH
Q 048364 244 ATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIR-TMRLEPNVIIW 322 (400)
Q Consensus 244 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~-~~~~~p~~~~~ 322 (400)
+.+...-..+...|..+|.+.|+.++....+..+.+. .+....-..+.+.-....-.+.|...+. .+.-+|+...+
T Consensus 242 eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf 318 (389)
T COG2956 242 EQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGF 318 (389)
T ss_pred HhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHH
Confidence 8866555677888999999999999999999888743 3344444444444444444556655554 44778999999
Q ss_pred HHHHHHHHh---cCCHHHHHHHHHHHHHcC
Q 048364 323 GSFLAACKE---HKQFDMAERVIKQALRMV 349 (400)
Q Consensus 323 ~~l~~~~~~---~~~~~~a~~~~~~~~~~~ 349 (400)
..++..-.. .|...+-...++.|+...
T Consensus 319 ~rl~~~~l~daeeg~~k~sL~~lr~mvge~ 348 (389)
T COG2956 319 HRLMDYHLADAEEGRAKESLDLLRDMVGEQ 348 (389)
T ss_pred HHHHHhhhccccccchhhhHHHHHHHHHHH
Confidence 999887643 445666667777776644
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.8e-11 Score=107.59 Aligned_cols=194 Identities=19% Similarity=0.224 Sum_probs=145.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccC-------C----CcccHHHHHHHHHhCCChhhHHHHHHHHHHC-----CC-CCCH
Q 048364 189 TILVDMYAKCGFLKYALMVFELMEE-------R----NVISWTALICGSAHRGYSEDALSLFEMMQAT-----GV-KPNE 251 (400)
Q Consensus 189 ~~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~~-~p~~ 251 (400)
+.+...|...+++++|..+|+++.. + -..+++.|..+|.+.|++++|...+++..+- |. .|..
T Consensus 245 ~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v 324 (508)
T KOG1840|consen 245 NILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEV 324 (508)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHH
Confidence 3577788888888888888887764 1 1346777888889999988887777665431 21 2222
Q ss_pred -HHHHHHHHHHHhcCChhhHHHHHHHhhhhcC--CCCC----hhhHHHHHHHHHhcCChHHHHHHHHhc---------cC
Q 048364 252 -MTFTGVLTACVHTGLVDEGRKYFKMIDEEYD--LEPR----IQHYGCMVDLFGKAGFLEEAYEVIRTM---------RL 315 (400)
Q Consensus 252 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~---------~~ 315 (400)
..++.+...|...+++++|..+++...+... +.++ ..+++.|...|...|++++|++++++. +.
T Consensus 325 ~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~ 404 (508)
T KOG1840|consen 325 AAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKK 404 (508)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCc
Confidence 2456667778889999999999987765432 2222 357899999999999999999999987 22
Q ss_pred Ccc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC--CCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 316 EPN-VIIWGSFLAACKEHKQFDMAERVIKQALRM----VK--PENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 316 ~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
.+. ...++.+...|.+.+++++|.++|.+.... |. | ....+|..|+..|...|+++.|.++.+....
T Consensus 405 ~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~-~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 405 DYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHP-DVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred ChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCC-chHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 332 456788999999999999999998876653 21 3 5567899999999999999999999888864
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.1e-10 Score=93.85 Aligned_cols=290 Identities=12% Similarity=0.105 Sum_probs=217.6
Q ss_pred HHHHHH--cCCChHHHHHHHhhCC---CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcc
Q 048364 87 MIKGYS--KSGNVCEARDFFERMP---LRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHL 161 (400)
Q Consensus 87 l~~~~~--~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~ 161 (400)
+..+.. -.|++..|+++..+-. +.....|..-.++--+.|+.+.+-.++.+.- +..-.++...+.+..+.....
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaa-e~~~~~~l~v~ltrarlll~~ 166 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAA-ELAGDDTLAVELTRARLLLNR 166 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHh-ccCCCchHHHHHHHHHHHHhC
Confidence 444443 3799999999998755 3345566667778889999999999999987 322234445566667778888
Q ss_pred cchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCC-----------cccHHHHHHHHHhCC
Q 048364 162 GSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERN-----------VISWTALICGSAHRG 230 (400)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----------~~~~~~l~~~~~~~~ 230 (400)
|+.+. |..-.+.+.+.+. -++.+......+|.+.|++.....++.++.+.. ..+|+.+++-....+
T Consensus 167 ~d~~a--A~~~v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~ 243 (400)
T COG3071 167 RDYPA--ARENVDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDN 243 (400)
T ss_pred CCchh--HHHHHHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccc
Confidence 99888 8888888877763 356777888999999999999999999998732 235777776666666
Q ss_pred ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 048364 231 YSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVI 310 (400)
Q Consensus 231 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 310 (400)
..+.-...++..... .+-++..-.+++.-+.+.|+.++|.++.++..++ +..|+.. ..-.+.+-++...-.+..
T Consensus 244 ~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L~----~~~~~l~~~d~~~l~k~~ 317 (400)
T COG3071 244 GSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRLC----RLIPRLRPGDPEPLIKAA 317 (400)
T ss_pred cchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhHH----HHHhhcCCCCchHHHHHH
Confidence 666666666665443 3445666677888889999999999999998855 5555521 122345667776666666
Q ss_pred Hhc--cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhcccccc
Q 048364 311 RTM--RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRK 388 (400)
Q Consensus 311 ~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 388 (400)
++- ..+.+.-.+.+|...|.+.+.+.+|...|+..++.. ++..+|..+..++.+.|+.++|.+..++....-.+|
T Consensus 318 e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~---~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 318 EKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLR---PSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred HHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 655 222234678889999999999999999999999888 599999999999999999999999998887554444
Q ss_pred c
Q 048364 389 A 389 (400)
Q Consensus 389 ~ 389 (400)
.
T Consensus 395 ~ 395 (400)
T COG3071 395 N 395 (400)
T ss_pred C
Confidence 3
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.4e-09 Score=96.27 Aligned_cols=355 Identities=11% Similarity=0.037 Sum_probs=243.1
Q ss_pred hcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCC--------CChhhHHHHHHHHHcCCC
Q 048364 26 CTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPE--------RNAVTWNTMIKGYSKSGN 96 (400)
Q Consensus 26 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~~~ 96 (400)
+++..-++.|..++....+. ++-+..+|.+....- .+|..+...++.++... -+...|-.=...|-..|.
T Consensus 416 larLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ags 494 (913)
T KOG0495|consen 416 LARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGS 494 (913)
T ss_pred HHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCC
Confidence 33444455555555555443 223444554444444 55555555555544321 123333333334444444
Q ss_pred hHHHHHHHhhCC-----CC-ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCC-CHHHHHHHHHHhhcccchhhhhh
Q 048364 97 VCEARDFFERMP-----LR-NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTP-DQMTIGAVLSGCSHLGSVGLLMG 169 (400)
Q Consensus 97 ~~~a~~~~~~~~-----~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~~~a 169 (400)
.--+..+..... +. -..+|+.-...|.+.+.++-|..+|...+ .+-| +...|......--..|..+. .
T Consensus 495 v~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~al---qvfp~k~slWlra~~~ek~hgt~Es--l 569 (913)
T KOG0495|consen 495 VITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHAL---QVFPCKKSLWLRAAMFEKSHGTRES--L 569 (913)
T ss_pred hhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHH---hhccchhHHHHHHHHHHHhcCcHHH--H
Confidence 444433333322 11 22466666777777778888888887776 3344 34455555555555666666 6
Q ss_pred hhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CcccHHHHHHHHHhCCChhhHHHHHHHHHHCC
Q 048364 170 KSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE--R-NVISWTALICGSAHRGYSEDALSLFEMMQATG 246 (400)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 246 (400)
..+++.+...- +.....|......+-..|+...|..++....+ | +...|.+.+.....+.+++.|..+|.+....
T Consensus 570 ~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~- 647 (913)
T KOG0495|consen 570 EALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI- 647 (913)
T ss_pred HHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc-
Confidence 66676666553 33455666677778888999999999988876 3 4457888888889999999999999988764
Q ss_pred CCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHH
Q 048364 247 VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGS 324 (400)
Q Consensus 247 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~ 324 (400)
.|+...|..-+....-.++.++|.+++++..+ .++.-...|..+.+.+-+.++.+.|.+.|..- ..-| ....|-.
T Consensus 648 -sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWll 724 (913)
T KOG0495|consen 648 -SGTERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLL 724 (913)
T ss_pred -CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHH
Confidence 67778787777777778999999999999996 44445677888999999999999999988876 4445 5567777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhccccccccCcccc
Q 048364 325 FLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395 (400)
Q Consensus 325 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 395 (400)
+...=-+.|++-.|..++++..-++ | .+...|...+++-.+.|..+.|..++.+..+. -|..+.-|.
T Consensus 725 LakleEk~~~~~rAR~ildrarlkN-P-k~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWa 791 (913)
T KOG0495|consen 725 LAKLEEKDGQLVRARSILDRARLKN-P-KNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWA 791 (913)
T ss_pred HHHHHHHhcchhhHHHHHHHHHhcC-C-CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHH
Confidence 7777788899999999999999999 9 89999999999999999999998877666532 134444443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.1e-09 Score=95.22 Aligned_cols=262 Identities=13% Similarity=0.051 Sum_probs=204.1
Q ss_pred ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHH
Q 048364 111 NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATI 190 (400)
Q Consensus 111 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 190 (400)
++.....-..-+...+++.+..++.+...+.. ++....+-.-|.++...|+... -..+-..+.+. .+..+.+|-+
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d--pfh~~~~~~~ia~l~el~~~n~--Lf~lsh~LV~~-yP~~a~sW~a 317 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD--PFHLPCLPLHIACLYELGKSNK--LFLLSHKLVDL-YPSKALSWFA 317 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC--CCCcchHHHHHHHHHHhcccch--HHHHHHHHHHh-CCCCCcchhh
Confidence 44555555667788899999999999988444 4445556666678888888665 44444444443 3556788889
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCCC---cccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 048364 191 LVDMYAKCGFLKYALMVFELMEERN---VISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLV 267 (400)
Q Consensus 191 l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 267 (400)
+..-|...|+..+|++.|.+...-| ...|-.+..+|+-.|..|+|+..|...-+. ++-...-+.-+..-|.+.++.
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccH
Confidence 9999999999999999999877643 357999999999999999999999877664 111112233345568889999
Q ss_pred hhHHHHHHHhhhhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhc-----cC---Cc-cHHHHHHHHHHHHhcCCHHH
Q 048364 268 DEGRKYFKMIDEEYDLEP-RIQHYGCMVDLFGKAGFLEEAYEVIRTM-----RL---EP-NVIIWGSFLAACKEHKQFDM 337 (400)
Q Consensus 268 ~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-----~~---~p-~~~~~~~l~~~~~~~~~~~~ 337 (400)
+.|.++|.+.. ++.| |+...+-+.-.....+.+.+|..+|+.. .+ .+ -..+++.|..+|.+.+++++
T Consensus 397 kLAe~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 397 KLAEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred HHHHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 99999999998 4444 6777888887788889999999999876 11 11 44578999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 338 AERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 338 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
|+..+++.+... | .+..++..++-.|...|+++.|.+.|.+..-
T Consensus 474 AI~~~q~aL~l~-~-k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 474 AIDYYQKALLLS-P-KDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHHHHHcC-C-CchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 999999999999 8 8999999999999999999999999887653
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.41 E-value=7e-13 Score=79.62 Aligned_cols=50 Identities=30% Similarity=0.592 Sum_probs=42.7
Q ss_pred CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048364 214 RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVH 263 (400)
Q Consensus 214 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 263 (400)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67788888888888888888888888888888888888888888888764
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.2e-10 Score=96.78 Aligned_cols=290 Identities=14% Similarity=0.113 Sum_probs=200.0
Q ss_pred HHHHHHHHcCCChHHHHHHHhhCC--CCC-hhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHH-HHHHHHHHhhc
Q 048364 85 NTMIKGYSKSGNVCEARDFFERMP--LRN-VASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQM-TIGAVLSGCSH 160 (400)
Q Consensus 85 ~~l~~~~~~~~~~~~a~~~~~~~~--~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~ll~~~~~ 160 (400)
-...+-|.++|.+++|++.|.... .|| +..|.....+|...|+|+++.+--.+.+ .+.|+-. .+..-.+++-.
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkAL---El~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKAL---ELNPDYVKALLRRASAHEQ 195 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHh---hcCcHHHHHHHHHHHHHHh
Confidence 344556778899999999998876 566 7788888889999999999888887777 5566643 55555566666
Q ss_pred ccchhhhh--------------------hhhhhhH---------HHhcc--ccchHHHHHHHHHHHHh---------c--
Q 048364 161 LGSVGLLM--------------------GKSAHGF---------IVKNE--WELNEQIATILVDMYAK---------C-- 198 (400)
Q Consensus 161 ~~~~~~~~--------------------a~~~~~~---------~~~~~--~~~~~~~~~~l~~~~~~---------~-- 198 (400)
.|++++++ +.+++.. +.+++ +-|+.....+....+-. .
T Consensus 196 lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~k 275 (606)
T KOG0547|consen 196 LGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDK 275 (606)
T ss_pred hccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCcc
Confidence 66655410 1111111 11011 22333333322222210 0
Q ss_pred --------------C---CHHHHHHHHHhccC-----C--C---cc------cHHHHHHHHHhCCChhhHHHHHHHHHHC
Q 048364 199 --------------G---FLKYALMVFELMEE-----R--N---VI------SWTALICGSAHRGYSEDALSLFEMMQAT 245 (400)
Q Consensus 199 --------------g---~~~~A~~~~~~~~~-----~--~---~~------~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 245 (400)
+ .+..|...+.+-.. + + .. +...-..-+.-.|+.-+|..-|+..+..
T Consensus 276 sDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l 355 (606)
T KOG0547|consen 276 SDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKL 355 (606)
T ss_pred chhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhc
Confidence 0 11222221111100 1 1 11 1111112234568889999999999887
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHH
Q 048364 246 GVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP-RIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIW 322 (400)
Q Consensus 246 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~ 322 (400)
...++.. |--+..+|...++.++.++.|+.... +.| ++.+|..-.+.+.-.+++++|..-|++. .+.| +...|
T Consensus 356 ~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~---ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~ 431 (606)
T KOG0547|consen 356 DPAFNSL-YIKRAAAYADENQSEKMWKDFNKAED---LDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAY 431 (606)
T ss_pred CcccchH-HHHHHHHHhhhhccHHHHHHHHHHHh---cCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHH
Confidence 5544432 66777789999999999999999983 344 6788999999999999999999999998 7777 45677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 323 GSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 323 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
-.+..+..+++++++++..|++.+++. | ..+..|+....++...++++.|.+.|+..++
T Consensus 432 iQl~~a~Yr~~k~~~~m~~Fee~kkkF-P-~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 432 IQLCCALYRQHKIAESMKTFEEAKKKF-P-NCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC-C-CCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 777777889999999999999999999 9 8999999999999999999999999998876
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.4e-12 Score=78.35 Aligned_cols=50 Identities=32% Similarity=0.708 Sum_probs=46.9
Q ss_pred CChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhc
Q 048364 110 RNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSH 160 (400)
Q Consensus 110 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~ 160 (400)
||+.+||++|.+|++.|++++|.++|++|. +.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~-~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMK-KRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHcC
Confidence 788999999999999999999999999999 88999999999999999875
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1e-09 Score=102.00 Aligned_cols=261 Identities=11% Similarity=-0.015 Sum_probs=177.9
Q ss_pred ChhhHHHHHHHHHh-----cCCcchHHHHHHHHHhcCCCCCCHH-HHHHHHHHhh---------cccchhhhhhhhhhhH
Q 048364 111 NVASWSAMIAAYLN-----AGAYDPGLKLFREMISNEGLTPDQM-TIGAVLSGCS---------HLGSVGLLMGKSAHGF 175 (400)
Q Consensus 111 ~~~~~~~l~~~~~~-----~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~ll~~~~---------~~~~~~~~~a~~~~~~ 175 (400)
+...|...+++-.. .+.+++|.++|++.. ...|+.. .|..+..++. ..++.+. |...++.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al---~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~--A~~~~~~ 329 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCV---NMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIK--AKEHAIK 329 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHH---hcCCccHHHHHHHHHHHHHHHHcCCcccchHHHH--HHHHHHH
Confidence 45566666655322 234678999999988 4466543 4544444433 2234566 7888887
Q ss_pred HHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHH
Q 048364 176 IVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE--R-NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEM 252 (400)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 252 (400)
+.+... .+...+..+..++...|++++|...|++..+ | +...+..+...+...|++++|+..+++..+.... +..
T Consensus 330 Al~ldP-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~ 407 (553)
T PRK12370 330 ATELDH-NNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAA 407 (553)
T ss_pred HHhcCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chh
Confidence 777653 3567788888889999999999999999876 3 3456788888999999999999999999886432 222
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCccHH-HHHHHHHHH
Q 048364 253 TFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP-RIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNVI-IWGSFLAAC 329 (400)
Q Consensus 253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~~-~~~~l~~~~ 329 (400)
.+..++..+...|++++|...++++.+. .+| ++..+..+..++...|++++|...++++ ...|+.. ..+.+...|
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~ 485 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEY 485 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence 3333444566789999999999988743 234 4455777888899999999999999988 4455544 445555666
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhccc
Q 048364 330 KEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQN 385 (400)
Q Consensus 330 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 385 (400)
...| +.|...++++.+...- ...-...+...|.-.|+-+.+..+ +++.+.+
T Consensus 486 ~~~g--~~a~~~l~~ll~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 486 CQNS--ERALPTIREFLESEQR--IDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hccH--HHHHHHHHHHHHHhhH--hhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 7777 4777777776664421 111122245556666776666665 7777654
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.2e-10 Score=92.01 Aligned_cols=196 Identities=15% Similarity=0.104 Sum_probs=124.9
Q ss_pred hhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHH
Q 048364 112 VASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATIL 191 (400)
Q Consensus 112 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 191 (400)
...+..+...+...|++++|.+.+++..+. .|+ +...+..+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~---~p~------------------------------------~~~~~~~l 71 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEH---DPD------------------------------------DYLAYLAL 71 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---Ccc------------------------------------cHHHHHHH
Confidence 345666677777777777777777776611 222 22334445
Q ss_pred HHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCh
Q 048364 192 VDMYAKCGFLKYALMVFELMEE---RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKP-NEMTFTGVLTACVHTGLV 267 (400)
Q Consensus 192 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~ 267 (400)
...|...|++++|.+.+++..+ .+...+..+...+...|++++|...+++.......| ....+..+..++...|++
T Consensus 72 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 151 (234)
T TIGR02521 72 ALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDF 151 (234)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCH
Confidence 5556666666666666665553 233455556666677777777777777766542222 234555666677777888
Q ss_pred hhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048364 268 DEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQA 345 (400)
Q Consensus 268 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 345 (400)
++|...+++..+. .+.+...+..+...+...|++++|...+++. ...| +...+..+...+...|+.++|..+.+.+
T Consensus 152 ~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 152 DKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 8888888777742 2334556777777788888888888887776 2223 4455566677777788888888777776
Q ss_pred HHc
Q 048364 346 LRM 348 (400)
Q Consensus 346 ~~~ 348 (400)
...
T Consensus 230 ~~~ 232 (234)
T TIGR02521 230 QKL 232 (234)
T ss_pred Hhh
Confidence 554
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.8e-10 Score=93.41 Aligned_cols=226 Identities=12% Similarity=0.049 Sum_probs=113.9
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHH
Q 048364 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMY 195 (400)
Q Consensus 116 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 195 (400)
+-+..+|.+.|-+.+|.+.++.-+ .-.|-+.||..+-++|.+..+... |..++..-.+.- +.++.........+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL---~q~~~~dTfllLskvY~ridQP~~--AL~~~~~gld~f-P~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSL---TQFPHPDTFLLLSKVYQRIDQPER--ALLVIGEGLDSF-PFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHh---hcCCchhHHHHHHHHHHHhccHHH--HHHHHhhhhhcC-CchhhhhhhhHHHH
Confidence 345666666666666666666655 224455566666666666555555 555554443331 22333334444555
Q ss_pred HhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 048364 196 AKCGFLKYALMVFELMEE---RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRK 272 (400)
Q Consensus 196 ~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 272 (400)
-..++.++|.++|+...+ .++....++...|.-.++++-|+..|+++...|+. +...|+.+.-+|.-.++++-+..
T Consensus 301 eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHH
Confidence 555555555555555544 13334444444555555555555555555555544 44455555555555555555555
Q ss_pred HHHHhhhhcCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHhc--cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048364 273 YFKMIDEEYDLEPR--IQHYGCMVDLFGKAGFLEEAYEVIRTM--RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM 348 (400)
Q Consensus 273 ~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 348 (400)
-|++.... -..|+ ..+|-.+.......|++..|.+.|+-. ........+|.|.-.-.+.|++++|..++..+.+.
T Consensus 380 sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 380 SFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 55555421 22222 233444444444555555555555443 21223334555554455555555555555555444
Q ss_pred C
Q 048364 349 V 349 (400)
Q Consensus 349 ~ 349 (400)
.
T Consensus 459 ~ 459 (478)
T KOG1129|consen 459 M 459 (478)
T ss_pred C
Confidence 4
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.4e-10 Score=105.56 Aligned_cols=232 Identities=13% Similarity=0.045 Sum_probs=138.3
Q ss_pred cCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHH
Q 048364 141 NEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWT 220 (400)
Q Consensus 141 ~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 220 (400)
..|+.|+..||..+|..|+..|+.+. |. ++..|.-...+.+..+++.++......++.+.+. +|...+|.
T Consensus 18 ~~gi~PnRvtyqsLiarYc~~gdiea--at-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDtyt 87 (1088)
T KOG4318|consen 18 ISGILPNRVTYQSLIARYCTKGDIEA--AT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTYT 87 (1088)
T ss_pred HhcCCCchhhHHHHHHHHcccCCCcc--cc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCchhHHH
Confidence 44666666666666666666666665 44 5555555555555556666665555555554443 45555666
Q ss_pred HHHHHHHhCCChhh-----------------------HHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCChhhHHHHHHH
Q 048364 221 ALICGSAHRGYSED-----------------------ALSLFEMMQA-TGVKPNEMTFTGVLTACVHTGLVDEGRKYFKM 276 (400)
Q Consensus 221 ~l~~~~~~~~~~~~-----------------------a~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 276 (400)
.|..+|...||..- ...++..+.- .+.-||..+ .+.-..-.|-++.+.+++..
T Consensus 88 ~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~eglwaqllkll~~ 164 (1088)
T KOG4318|consen 88 NLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLEGLWAQLLKLLAK 164 (1088)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHHHHHHHHHHHHhh
Confidence 66666666665432 2222222110 112222221 22222334555555555544
Q ss_pred hhhhcCCCCChhhHHHHHHHHHh-cCChHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCc
Q 048364 277 IDEEYDLEPRIQHYGCMVDLFGK-AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355 (400)
Q Consensus 277 ~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 355 (400)
+.......|... +++-... ...+++-..+.....-.|+..+|..++.+-...|+.+.|..++.+|.+.|.| .++
T Consensus 165 ~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfp-ir~ 239 (1088)
T KOG4318|consen 165 VPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFP-IRA 239 (1088)
T ss_pred CCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCC-ccc
Confidence 432111111111 1222222 2234444444444422799999999999999999999999999999999977 777
Q ss_pred hHHHHHHHHhhcccchHHHHHHHHHHhccccccccCcc
Q 048364 356 GVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393 (400)
Q Consensus 356 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 393 (400)
..|..|+-+ .|+...+..+++.|.+.|+.|+.++-
T Consensus 240 HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ 274 (1088)
T KOG4318|consen 240 HYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQ 274 (1088)
T ss_pred ccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchh
Confidence 777777655 78888899999999999999988763
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.7e-08 Score=89.89 Aligned_cols=373 Identities=16% Similarity=0.085 Sum_probs=261.3
Q ss_pred hhHHHHhCCCCCCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCCC--
Q 048364 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPER-- 79 (400)
Q Consensus 3 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~-- 79 (400)
.+.+++...++.|...|..|.-++.+.|+++.+-+.|++....-+ .....|..+...+ ..|.-..|..+++.-..+
T Consensus 310 ~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~ 388 (799)
T KOG4162|consen 310 LLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSE 388 (799)
T ss_pred HHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhccccc
Confidence 456677777888999999999999999999999999999876533 3566788888888 999999999999877643
Q ss_pred ---ChhhHHHHHHHHH-cCCChHHHHHHHhhCCC--------CChhhHHHHHHHHHhc-----------CCcchHHHHHH
Q 048364 80 ---NAVTWNTMIKGYS-KSGNVCEARDFFERMPL--------RNVASWSAMIAAYLNA-----------GAYDPGLKLFR 136 (400)
Q Consensus 80 ---~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~-----------g~~~~a~~~~~ 136 (400)
|+..+-..-..|. +.+..++++.+-.+... -....|..+.-+|... ....++++.++
T Consensus 389 ~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale 468 (799)
T KOG4162|consen 389 QPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALE 468 (799)
T ss_pred CCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHH
Confidence 2333333334444 45666776666554431 1344555555444432 23567888899
Q ss_pred HHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCC--
Q 048364 137 EMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEER-- 214 (400)
Q Consensus 137 ~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 214 (400)
+..+..+..|+...|.++ -|+..++++. |.....+..+.+-..+...|.-|.-.+...+++.+|+.+.+.....
T Consensus 469 ~av~~d~~dp~~if~lal--q~A~~R~l~s--Al~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~ 544 (799)
T KOG4162|consen 469 EAVQFDPTDPLVIFYLAL--QYAEQRQLTS--ALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG 544 (799)
T ss_pred HHHhcCCCCchHHHHHHH--HHHHHHhHHH--HHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh
Confidence 988566666766555444 3556677888 8888888888877778888988888899999999999988766531
Q ss_pred C---------------------cccHHHHHHHHH-----------------------hCCChhhHHHHHHHHH-------
Q 048364 215 N---------------------VISWTALICGSA-----------------------HRGYSEDALSLFEMMQ------- 243 (400)
Q Consensus 215 ~---------------------~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~m~------- 243 (400)
+ ..+...++...- ..++..++.+....+.
T Consensus 545 ~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~ 624 (799)
T KOG4162|consen 545 DNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL 624 (799)
T ss_pred hhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh
Confidence 1 112222221111 0012222222222111
Q ss_pred -HCC---------CC--CCH------HHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHH
Q 048364 244 -ATG---------VK--PNE------MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEE 305 (400)
Q Consensus 244 -~~~---------~~--p~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 305 (400)
..| +. |+. ..+......+.+.++.++|...+.+..+ ..+-....|......+...|..++
T Consensus 625 ~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~E 702 (799)
T KOG4162|consen 625 KSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEE 702 (799)
T ss_pred hhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHH
Confidence 011 01 111 1233445566778888888888887763 334456677777788889999999
Q ss_pred HHHHHHhc-cCCccH-HHHHHHHHHHHhcCCHHHHHH--HHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHH
Q 048364 306 AYEVIRTM-RLEPNV-IIWGSFLAACKEHKQFDMAER--VIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLM 381 (400)
Q Consensus 306 a~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 381 (400)
|.+.|... .+.|+. .+..++...+.+.|+...|.. ++.++.+.+ | .++..|..++..+...|+.++|.+.|...
T Consensus 703 A~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p-~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 703 AKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-P-LNHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-C-CCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 99999887 777754 578899999999999888888 999999999 9 99999999999999999999999999988
Q ss_pred hcc
Q 048364 382 LNQ 384 (400)
Q Consensus 382 ~~~ 384 (400)
.+.
T Consensus 781 ~qL 783 (799)
T KOG4162|consen 781 LQL 783 (799)
T ss_pred Hhh
Confidence 764
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.5e-10 Score=102.60 Aligned_cols=256 Identities=12% Similarity=0.003 Sum_probs=176.1
Q ss_pred ChhhHHHHHHHHHc-----CCChHHHHHHHhhCCC--C-ChhhHHHHHHHHHh---------cCCcchHHHHHHHHHhcC
Q 048364 80 NAVTWNTMIKGYSK-----SGNVCEARDFFERMPL--R-NVASWSAMIAAYLN---------AGAYDPGLKLFREMISNE 142 (400)
Q Consensus 80 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~---------~g~~~~a~~~~~~m~~~~ 142 (400)
+...|...+.+... .++.++|+++|++... | +...|..+..+|.. .+++++|...+++..
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al--- 331 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT--- 331 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH---
Confidence 44555566655322 2346788888988763 3 34566666655542 234788999999888
Q ss_pred CCCC-CHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC--CCc-cc
Q 048364 143 GLTP-DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE--RNV-IS 218 (400)
Q Consensus 143 ~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~ 218 (400)
.+.| +...+..+...+...|++++ |...++.+.+.+ +.+...+..+..++...|++++|...+++..+ |+. ..
T Consensus 332 ~ldP~~~~a~~~lg~~~~~~g~~~~--A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~ 408 (553)
T PRK12370 332 ELDHNNPQALGLLGLINTIHSEYIV--GSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAA 408 (553)
T ss_pred hcCCCCHHHHHHHHHHHHHccCHHH--HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhh
Confidence 3345 45567777778888899999 999999888876 33456778889999999999999999999876 332 23
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHH
Q 048364 219 WTALICGSAHRGYSEDALSLFEMMQATGVKP-NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297 (400)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 297 (400)
+..++..+...|++++|...+++..... .| +...+..+..++...|+.++|...++++... .+.+....+.+...|
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~ 485 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEY 485 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHH
Confidence 3444555677899999999999987653 34 3455677778888999999999999988742 222344456666677
Q ss_pred HhcCChHHHHHHHHhc----cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 298 GKAGFLEEAYEVIRTM----RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 298 ~~~g~~~~a~~~~~~~----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
...| ++|...++.+ ...|....+ +-..+.-.|+-+.+..+ +++.+.+
T Consensus 486 ~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 486 CQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 7777 4777777666 323333333 33445556777776655 8777766
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.6e-09 Score=93.69 Aligned_cols=239 Identities=12% Similarity=0.126 Sum_probs=136.9
Q ss_pred hhhHHHHHH-HhCCHHHHHHHHhhCCC----------CChh-hHHHHHHHHHcCCChHHHHHHHhhCC----------CC
Q 048364 53 VATSLLHEY-VVTSFGFARKLFDELPE----------RNAV-TWNTMIKGYSKSGNVCEARDFFERMP----------LR 110 (400)
Q Consensus 53 ~~~~l~~~~-~~g~~~~a~~~~~~~~~----------~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~----------~~ 110 (400)
+...+...| ..|+++.|..+++...+ +... ..+.+...|...+++++|..+|+++. .|
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 444456666 77777777666665543 1221 23345667778888888888887764 11
Q ss_pred -ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccch-HHHH
Q 048364 111 -NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELN-EQIA 188 (400)
Q Consensus 111 -~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~ 188 (400)
-..+++.|..+|.+.|++++|..+++...+- + ....-. ..|. ...+
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I---------~----------------------~~~~~~-~~~~v~~~l 328 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEI---------Y----------------------EKLLGA-SHPEVAAQL 328 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHH---------H----------------------HHhhcc-ChHHHHHHH
Confidence 2346777888888999999988888776510 0 000000 0011 1223
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 048364 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVD 268 (400)
Q Consensus 189 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 268 (400)
+.+...++..+++++|..++... .+++.......-.--..+++.+...|...|+++
T Consensus 329 ~~~~~~~~~~~~~Eea~~l~q~a------------------------l~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ 384 (508)
T KOG1840|consen 329 SELAAILQSMNEYEEAKKLLQKA------------------------LKIYLDAPGEDNVNLAKIYANLAELYLKMGKYK 384 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHH------------------------HHHHHhhccccchHHHHHHHHHHHHHHHhcchh
Confidence 44555566666666666665432 222221111000012245666666666666666
Q ss_pred hHHHHHHHhhhhc----C-CCC-ChhhHHHHHHHHHhcCChHHHHHHHHhc--------cCCccH-HHHHHHHHHHHhcC
Q 048364 269 EGRKYFKMIDEEY----D-LEP-RIQHYGCMVDLFGKAGFLEEAYEVIRTM--------RLEPNV-IIWGSFLAACKEHK 333 (400)
Q Consensus 269 ~a~~~~~~~~~~~----~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~--------~~~p~~-~~~~~l~~~~~~~~ 333 (400)
+|..+++.+.... + ..+ ....++.+...|.+.+++.+|.++|.+. ...|+. .+|..|...|...|
T Consensus 385 ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g 464 (508)
T KOG1840|consen 385 EAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQG 464 (508)
T ss_pred HHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcc
Confidence 6666666555321 1 111 1334566667777777777777776665 223433 47888888888888
Q ss_pred CHHHHHHHHHHHHH
Q 048364 334 QFDMAERVIKQALR 347 (400)
Q Consensus 334 ~~~~a~~~~~~~~~ 347 (400)
+++.|+++.+.+..
T Consensus 465 ~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 465 NYEAAEELEEKVLN 478 (508)
T ss_pred cHHHHHHHHHHHHH
Confidence 88888888877763
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.1e-08 Score=85.26 Aligned_cols=361 Identities=14% Similarity=0.049 Sum_probs=218.1
Q ss_pred chhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCC---CChhhHHHHHHHH
Q 048364 16 SFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPE---RNAVTWNTMIKGY 91 (400)
Q Consensus 16 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~ 91 (400)
..|.....-.+...|+.++|.......++..+. +...|+.+.-.+ ...++++|++.|..... .|...|.-+.-.-
T Consensus 41 geslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ 119 (700)
T KOG1156|consen 41 GESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQ 119 (700)
T ss_pred chhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 344444444455567777777777666664433 555666666666 66778888888877653 3455565555555
Q ss_pred HcCCChHHHHHHHhhCC---CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHH------Hhhccc
Q 048364 92 SKSGNVCEARDFFERMP---LRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLS------GCSHLG 162 (400)
Q Consensus 92 ~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~------~~~~~~ 162 (400)
++.++++.....-.... ......|..+..++.-.|++..|..++++..+...-.|+...+..... ...+.|
T Consensus 120 ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g 199 (700)
T KOG1156|consen 120 IQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAG 199 (700)
T ss_pred HHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 66677666666655544 224467888888888899999999999998844334566666554333 234455
Q ss_pred chhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC--CCcccHHHHH-HHHHhCCChhhHH-HH
Q 048364 163 SVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE--RNVISWTALI-CGSAHRGYSEDAL-SL 238 (400)
Q Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~-~~~~~~~~~~~a~-~~ 238 (400)
..+. +.+.+...... +.-....-..-...+.+.+++++|..++..+.. ||...|+... .++.+..+.-++. .+
T Consensus 200 ~~q~--ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~l 276 (700)
T KOG1156|consen 200 SLQK--ALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKAL 276 (700)
T ss_pred cHHH--HHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 5444 43333322211 111122223455678889999999999998887 4444444433 3332222222222 33
Q ss_pred H----------------------------------HHHHHCCCCCCHHHHHHHHHHHHhcCChhh----HHHHHHHhhhh
Q 048364 239 F----------------------------------EMMQATGVKPNEMTFTGVLTACVHTGLVDE----GRKYFKMIDEE 280 (400)
Q Consensus 239 ~----------------------------------~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~ 280 (400)
| ..+.+.|+++-. ..+..-+-.....+- +..+...+. .
T Consensus 277 y~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf---~dl~SLyk~p~k~~~le~Lvt~y~~~L~-~ 352 (700)
T KOG1156|consen 277 YAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVF---KDLRSLYKDPEKVAFLEKLVTSYQHSLS-G 352 (700)
T ss_pred HHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchh---hhhHHHHhchhHhHHHHHHHHHHHhhcc-c
Confidence 3 333333433221 112111111111111 111111111 1
Q ss_pred cC----------CCCChhhH--HHHHHHHHhcCChHHHHHHHHhc-cCCccHH-HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048364 281 YD----------LEPRIQHY--GCMVDLFGKAGFLEEAYEVIRTM-RLEPNVI-IWGSFLAACKEHKQFDMAERVIKQAL 346 (400)
Q Consensus 281 ~~----------~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~ 346 (400)
.| -+|+...| -.++..|-+.|+++.|+..++.. +-.|+.+ .|..=.+.+...|++++|..++++..
T Consensus 353 ~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~ 432 (700)
T KOG1156|consen 353 TGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQ 432 (700)
T ss_pred ccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 11 14555444 45678888999999999999988 7677654 56666688999999999999999999
Q ss_pred HcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhcccc
Q 048364 347 RMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNV 386 (400)
Q Consensus 347 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 386 (400)
+.+ . +|...-.--+....+++..++|.++.....+.|.
T Consensus 433 elD-~-aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 433 ELD-T-ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred hcc-c-hhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 998 5 4665555677778899999999999888877664
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.2e-09 Score=84.42 Aligned_cols=194 Identities=12% Similarity=-0.010 Sum_probs=158.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhccCCCc---ccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048364 186 QIATILVDMYAKCGFLKYALMVFELMEERNV---ISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACV 262 (400)
Q Consensus 186 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 262 (400)
.+...|.-.|...|++..|..-+++..+.|+ .+|..+...|.+.|+.+.|.+.|++...... -+....|....-+|
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FLC 114 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHHH
Confidence 4556778889999999999999999987544 4677888899999999999999999887632 24566777777788
Q ss_pred hcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHH
Q 048364 263 HTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAER 340 (400)
Q Consensus 263 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~ 340 (400)
..|++++|.+.|+.........-...+|..+.-|..+.|+++.|.+.|++. ...| ...+.-.+.......|++..|..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 999999999999999876444445678999999999999999999999987 4455 34567778888889999999999
Q ss_pred HHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHh
Q 048364 341 VIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLML 382 (400)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 382 (400)
++++....+ + .+.......++.-.+.|+-+.+-++=..+.
T Consensus 195 ~~~~~~~~~-~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 195 YLERYQQRG-G-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHHHHhcc-c-ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 999999888 6 788888888888889999888877655554
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.2e-10 Score=91.30 Aligned_cols=223 Identities=12% Similarity=0.082 Sum_probs=186.3
Q ss_pred HHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC--CCcccH-HHHHHHHHh
Q 048364 152 GAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE--RNVISW-TALICGSAH 228 (400)
Q Consensus 152 ~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~-~~l~~~~~~ 228 (400)
+.+-++|.+.|-+.+ |+..++...+.. |.+.+|..|..+|.+..+...|..+|.+..+ |..+|| .-+...+..
T Consensus 227 ~Q~gkCylrLgm~r~--AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRR--AEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhh--hHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHH
Confidence 457788899999988 888888777664 5566777888999999999999999988876 544454 446678888
Q ss_pred CCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 048364 229 RGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308 (400)
Q Consensus 229 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 308 (400)
.++.++|.++|+...+.. ..+.....++...|.-.++++-|..+|+++. +.|. .++..|+.+.-+|.-.+++|-++.
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiL-qmG~-~speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRIL-QMGA-QSPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHH-HhcC-CChHHHhhHHHHHHhhcchhhhHH
Confidence 899999999999988763 3366777778888888999999999999999 4464 467889999999999999999999
Q ss_pred HHHhc---cCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 309 VIRTM---RLEPN--VIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 309 ~~~~~---~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
-|++. --.|+ ..+|-.+....+..||+..|.+.|+-.+..+ + .+...++.|...-.+.|+.++|..++....+
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~-~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-A-QHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-c-chHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 98887 22243 4578888888899999999999999999999 8 8899999999999999999999999988765
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.3e-08 Score=88.66 Aligned_cols=272 Identities=15% Similarity=0.070 Sum_probs=184.3
Q ss_pred chhhhhHHHHHH-HhCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHcCCChHHHHHHHhhCC---CCChhhHHHHHHHH
Q 048364 50 HVYVATSLLHEY-VVTSFGFARKLFDELPER---NAVTWNTMIKGYSKSGNVCEARDFFERMP---LRNVASWSAMIAAY 122 (400)
Q Consensus 50 ~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~ 122 (400)
+......-..-+ ..+++.+..++++.+.+. ....+..-|..+...|+..+-..+=.++. +....+|-++.--|
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YY 322 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYY 322 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHH
Confidence 344444455555 788888888888888753 44556666677777777666555555544 33567888888888
Q ss_pred HhcCCcchHHHHHHHHHhcCCCCCC-HHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccc-hHHHHHHHHHHHHhcCC
Q 048364 123 LNAGAYDPGLKLFREMISNEGLTPD-QMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWEL-NEQIATILVDMYAKCGF 200 (400)
Q Consensus 123 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 200 (400)
...|++++|.+.|.+.. .+.|. ...|......++-.+..++ +...+..+.+.-..- -+..| +.--|.+.+.
T Consensus 323 l~i~k~seARry~SKat---~lD~~fgpaWl~fghsfa~e~EhdQ--AmaaY~tAarl~~G~hlP~LY--lgmey~~t~n 395 (611)
T KOG1173|consen 323 LMIGKYSEARRYFSKAT---TLDPTFGPAWLAFGHSFAGEGEHDQ--AMAAYFTAARLMPGCHLPSLY--LGMEYMRTNN 395 (611)
T ss_pred HHhcCcHHHHHHHHHHh---hcCccccHHHHHHhHHhhhcchHHH--HHHHHHHHHHhccCCcchHHH--HHHHHHHhcc
Confidence 88899999999988876 44444 2467777777777777777 666655554432111 11222 2334667788
Q ss_pred HHHHHHHHHhccC---CCcccHHHHHHHHHhCCChhhHHHHHHHHHHC----C--CCCCHHHHHHHHHHHHhcCChhhHH
Q 048364 201 LKYALMVFELMEE---RNVISWTALICGSAHRGYSEDALSLFEMMQAT----G--VKPNEMTFTGVLTACVHTGLVDEGR 271 (400)
Q Consensus 201 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~--~~p~~~~~~~l~~~~~~~~~~~~a~ 271 (400)
++.|.+.|..... .|+...+-+.-.....+.+.+|..+|+..+.. + ...-..+++.|.+++.+.+.+++|+
T Consensus 396 ~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 396 LKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 8888888877764 36667777776667777888888888776521 0 0113446777888888888888888
Q ss_pred HHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCccHHHHHHHHHHHH
Q 048364 272 KYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNVIIWGSFLAACK 330 (400)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~~~~~~l~~~~~ 330 (400)
..+++... -.+.+..++.++.-.|...|+++.|.+.|.+. .+.|+..+-..++..+.
T Consensus 476 ~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 476 DYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 88887774 33457777888888888888888888888877 77777766666655443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.1e-08 Score=84.23 Aligned_cols=353 Identities=12% Similarity=0.094 Sum_probs=196.1
Q ss_pred HHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCCC---------------ChhhH---
Q 048364 24 KSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPER---------------NAVTW--- 84 (400)
Q Consensus 24 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~---------------~~~~~--- 84 (400)
.++-+.|++++|...+.-+... -.++...+..+...+ -.|.+.+|..+-.+.++. |..-+
T Consensus 65 ~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~f 143 (557)
T KOG3785|consen 65 HCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTF 143 (557)
T ss_pred HHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHH
Confidence 3445678888888888776653 344555555555555 777777777777666531 11111
Q ss_pred -----------HHHHHHHHcCCChHHHHHHHhhCC--CCChhhHHH-HHHHHHhcCCcchHHHHHHHHHhcCCCCCCHH-
Q 048364 85 -----------NTMIKGYSKSGNVCEARDFFERMP--LRNVASWSA-MIAAYLNAGAYDPGLKLFREMISNEGLTPDQM- 149 (400)
Q Consensus 85 -----------~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~- 149 (400)
-++.....-.-.+++|+++++++. .|+-...|. +.-+|.+..-++-+.++++-..++ -||+.
T Consensus 144 h~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q---~pdSti 220 (557)
T KOG3785|consen 144 HSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ---FPDSTI 220 (557)
T ss_pred HHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh---CCCcHH
Confidence 122222333345777888887766 333344443 345677777788888877777622 34432
Q ss_pred HHHHHHHHhhcc--cchhhh----h------hhhhhhHHHhccc------c------c-----hHHHHHHHHHHHHhcCC
Q 048364 150 TIGAVLSGCSHL--GSVGLL----M------GKSAHGFIVKNEW------E------L-----NEQIATILVDMYAKCGF 200 (400)
Q Consensus 150 ~~~~ll~~~~~~--~~~~~~----~------a~~~~~~~~~~~~------~------~-----~~~~~~~l~~~~~~~g~ 200 (400)
..|..+....+. |+..+. + .....+.+.+.++ + | -+..-..|+-.|.+.++
T Consensus 221 A~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~d 300 (557)
T KOG3785|consen 221 AKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQND 300 (557)
T ss_pred HHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeeccccc
Confidence 222222221111 111100 0 0011111222110 0 0 11122334445777888
Q ss_pred HHHHHHHHHhccCCCcccHHHHHHHHHhCCC-------hhhHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhhHHH
Q 048364 201 LKYALMVFELMEERNVISWTALICGSAHRGY-------SEDALSLFEMMQATGVKPNE-MTFTGVLTACVHTGLVDEGRK 272 (400)
Q Consensus 201 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~ 272 (400)
..+|..+.+++...++.-|-.-.-.++..|+ ..-|...|+-.-..+..-|. ..-.++..++.-..++++...
T Consensus 301 VqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~ 380 (557)
T KOG3785|consen 301 VQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLT 380 (557)
T ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHH
Confidence 8888888777664444333332223333333 23344444333233322222 233455566666778888888
Q ss_pred HHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCC-ccHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 273 YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLE-PNVIIWG-SFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~-p~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
+++.+. .+-...|...+| +.++++..|++.+|+++|-.+ +-+ .|..+|. .+.++|.+.++++.|..++ ++.+
T Consensus 381 YlnSi~-sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~---lk~~ 455 (557)
T KOG3785|consen 381 YLNSIE-SYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMM---LKTN 455 (557)
T ss_pred HHHHHH-HHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHH---HhcC
Confidence 888887 444444554444 788999999999999999888 322 3556664 4567888999998885554 4445
Q ss_pred CCCCCchHHHHHHHHhhcccchHHHHHHHHHHhccc
Q 048364 350 KPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQN 385 (400)
Q Consensus 350 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 385 (400)
.|.........+..-|.+.+.+--|-+.|+.+....
T Consensus 456 t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD 491 (557)
T KOG3785|consen 456 TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILD 491 (557)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC
Confidence 342334455566677888888888888888777543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-07 Score=83.52 Aligned_cols=346 Identities=12% Similarity=0.040 Sum_probs=203.9
Q ss_pred HHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCCCChhhHHHHHHHHH--cCC
Q 048364 19 ILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPERNAVTWNTMIKGYS--KSG 95 (400)
Q Consensus 19 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~--~~~ 95 (400)
.-+=++-+...|++++|.+...+++..++. +...+.+-+.++ ..+++++|+++.+.-........-.+=.+|| +.+
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~pd-d~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIVPD-DEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLN 93 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcCCC-cHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcc
Confidence 334455667889999999999999998744 444445555555 9999999998776655322221111345554 789
Q ss_pred ChHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCC-CCHHHHHHHHHHhhcccchhhhhhhhhhh
Q 048364 96 NVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLT-PDQMTIGAVLSGCSHLGSVGLLMGKSAHG 174 (400)
Q Consensus 96 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~-p~~~~~~~ll~~~~~~~~~~~~~a~~~~~ 174 (400)
..|+|+..++-....+..+...-...+-+.|++++|+++|+.+. ..+.. -+...-..++.+-.. .. ..
T Consensus 94 k~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~-kn~~dd~d~~~r~nl~a~~a~---------l~-~~ 162 (652)
T KOG2376|consen 94 KLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLA-KNNSDDQDEERRANLLAVAAA---------LQ-VQ 162 (652)
T ss_pred cHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHH-hcCCchHHHHHHHHHHHHHHh---------hh-HH
Confidence 99999999996665565566666778889999999999999997 33321 122222222222211 11 11
Q ss_pred HHHhccccc--hHHHHHHHHHHHHhcCCHHHHHHHHHhcc--------CCCc----------ccHHHHHHHHHhCCChhh
Q 048364 175 FIVKNEWEL--NEQIATILVDMYAKCGFLKYALMVFELME--------ERNV----------ISWTALICGSAHRGYSED 234 (400)
Q Consensus 175 ~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~----------~~~~~l~~~~~~~~~~~~ 234 (400)
.+......| +-..+......+...|++.+|+++++... +.|. ..--.+.-.+...|+..+
T Consensus 163 ~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 163 LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 122222222 22333345566788999999999998872 1111 122335556778999999
Q ss_pred HHHHHHHHHHCCCCCCHHH----HHHHHHHHHhcCCh-h-hHHHHHHHhhhhc--------CCCCChhhHHHHHHHHHhc
Q 048364 235 ALSLFEMMQATGVKPNEMT----FTGVLTACVHTGLV-D-EGRKYFKMIDEEY--------DLEPRIQHYGCMVDLFGKA 300 (400)
Q Consensus 235 a~~~~~~m~~~~~~p~~~~----~~~l~~~~~~~~~~-~-~a~~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~ 300 (400)
|..+|....+.. .+|... .|.|+.. ..-.++ + .+...++...... .-..-...+....-...-.
T Consensus 243 a~~iy~~~i~~~-~~D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t 320 (652)
T KOG2376|consen 243 ASSIYVDIIKRN-PADEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT 320 (652)
T ss_pred HHHHHHHHHHhc-CCCchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999998875 334422 2333322 111111 1 1111222111000 0000011122222222234
Q ss_pred CChHHHHHHHHhc-cCCccHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHH
Q 048364 301 GFLEEAYEVIRTM-RLEPNVIIWGSFLAACKE-HKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVR 378 (400)
Q Consensus 301 g~~~~a~~~~~~~-~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 378 (400)
+..+.+.++.... +..|....=..+..+... .....++..++...-+.. |..+..+...++......|+++.|.+++
T Consensus 321 nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~-p~~s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 321 NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGH-PEKSKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccC-CchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 5556677776666 445554443334444332 235788888888888877 7444667777777888999999999999
Q ss_pred H
Q 048364 379 K 379 (400)
Q Consensus 379 ~ 379 (400)
.
T Consensus 400 ~ 400 (652)
T KOG2376|consen 400 S 400 (652)
T ss_pred H
Confidence 8
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.3e-09 Score=79.95 Aligned_cols=194 Identities=16% Similarity=0.023 Sum_probs=94.7
Q ss_pred HHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHH
Q 048364 151 IGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE---RNVISWTALICGSA 227 (400)
Q Consensus 151 ~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 227 (400)
...+.-.|...|+... |..-++..++.. +.+..++..+...|.+.|+.+.|.+.|++..+ .+-...|....-+|
T Consensus 38 rlqLal~YL~~gd~~~--A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 38 RLQLALGYLQQGDYAQ--AKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHCCCHHH--HHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 3334444555555555 555555555443 12344455555555555555555555555443 23344455555555
Q ss_pred hCCChhhHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHH
Q 048364 228 HRGYSEDALSLFEMMQATGV-KPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA 306 (400)
Q Consensus 228 ~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 306 (400)
..|++++|...|++....-- .--..||..+.-+..+.|+.+.|..+|++..+ -.+..+.....+.+...+.|++..|
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccchHH
Confidence 55555555555555544311 11223455555555555555555555555552 1122233444455555555555555
Q ss_pred HHHHHhc--cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 307 YEVIRTM--RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 307 ~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
..+++.. +..++..+....|+.-...|+.+.+-++=.++.+..
T Consensus 193 r~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~f 237 (250)
T COG3063 193 RLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLF 237 (250)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 5555554 223455555555555555555555555444444444
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.1e-09 Score=91.65 Aligned_cols=220 Identities=13% Similarity=-0.037 Sum_probs=128.7
Q ss_pred HHHhcCCcchHHHHHHHHHhcCCCCCCH--HHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhc
Q 048364 121 AYLNAGAYDPGLKLFREMISNEGLTPDQ--MTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKC 198 (400)
Q Consensus 121 ~~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 198 (400)
.....++.+.++.-+.+++......|+. ..|..+...+...|+.+. |...+....+... .+...|+.+...|...
T Consensus 35 ~~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~--A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~ 111 (296)
T PRK11189 35 PLQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRAL--ARNDFSQALALRP-DMADAYNYLGIYLTQA 111 (296)
T ss_pred ccCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHH--HHHHHHHHHHcCC-CCHHHHHHHHHHHHHC
Confidence 3344456677777777777333333432 346666666777777777 7777777766542 3466777777777788
Q ss_pred CCHHHHHHHHHhccC--C-CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 048364 199 GFLKYALMVFELMEE--R-NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFK 275 (400)
Q Consensus 199 g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 275 (400)
|++++|...|++..+ | +..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...++
T Consensus 112 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~ 189 (296)
T PRK11189 112 GNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLK 189 (296)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHH
Confidence 888888877777765 3 3455666677777778888888877777665 3332211222222334566777777776
Q ss_pred HhhhhcCCCCChhhHHHHHHHHHhcCChHHH--HHHHHhc-cC----Cc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048364 276 MIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA--YEVIRTM-RL----EP-NVIIWGSFLAACKEHKQFDMAERVIKQALR 347 (400)
Q Consensus 276 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a--~~~~~~~-~~----~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (400)
.... ...|+... ..+. ....|+...+ .+.+.+. .. .| ....|..+...+.+.|++++|...|+++.+
T Consensus 190 ~~~~--~~~~~~~~-~~~~--~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 190 QRYE--KLDKEQWG-WNIV--EFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred HHHh--hCCccccH-HHHH--HHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5542 22232221 1222 2234444332 2222211 11 11 224677777777778888888888888877
Q ss_pred cCCC
Q 048364 348 MVKP 351 (400)
Q Consensus 348 ~~~~ 351 (400)
.+ |
T Consensus 265 ~~-~ 267 (296)
T PRK11189 265 NN-V 267 (296)
T ss_pred hC-C
Confidence 77 5
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.8e-08 Score=84.81 Aligned_cols=91 Identities=13% Similarity=0.036 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 048364 186 QIATILVDMYAKCGFLKYALMVFELMEE--R-NVISWTALICGSAHRGYSEDALSLFEMMQATGVKP-NEMTFTGVLTAC 261 (400)
Q Consensus 186 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~ 261 (400)
..|..+...|...|++++|...|++..+ | +...|+.+...+...|++++|...|++..+. .| +..++..+..++
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l 142 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 3344455555555555555555555543 2 2344555555555555555555555555543 22 234444455555
Q ss_pred HhcCChhhHHHHHHHhh
Q 048364 262 VHTGLVDEGRKYFKMID 278 (400)
Q Consensus 262 ~~~~~~~~a~~~~~~~~ 278 (400)
...|++++|.+.++...
T Consensus 143 ~~~g~~~eA~~~~~~al 159 (296)
T PRK11189 143 YYGGRYELAQDDLLAFY 159 (296)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 55555555555555555
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.6e-08 Score=87.87 Aligned_cols=123 Identities=16% Similarity=0.121 Sum_probs=71.7
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCC-ChhhHHHHHHHH
Q 048364 220 TALICGSAHRGYSEDALSLFEMMQATGVKPN-EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP-RIQHYGCMVDLF 297 (400)
Q Consensus 220 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~ 297 (400)
.-+...|...|++++|++.+++..+. .|+ ...|..-.+.+-+.|++.+|...++..+. +.+ |...-+..+..+
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~---LD~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARE---LDLADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---CChhhHHHHHHHHHHH
Confidence 44456666677777777777766665 344 45566666666677777777777776662 222 344444455566
Q ss_pred HhcCChHHHHHHHHhc---cCCccH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048364 298 GKAGFLEEAYEVIRTM---RLEPNV--------IIWGSFLAACKEHKQFDMAERVIKQALR 347 (400)
Q Consensus 298 ~~~g~~~~a~~~~~~~---~~~p~~--------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (400)
.++|++++|.+++... +..|-. +.......+|.+.|++..|+..|..+.+
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 6777777777666655 212211 1113345566677777766666655554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.16 E-value=5e-08 Score=88.15 Aligned_cols=127 Identities=17% Similarity=0.098 Sum_probs=100.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHH
Q 048364 253 TFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR-IQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAAC 329 (400)
Q Consensus 253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~ 329 (400)
++..+.+.|...|++++|..+++..... .|+ +..|..-.+.|-+.|++.+|.+.++.. .+.+ |...=+..+..+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence 5566677788999999999999999843 454 678888899999999999999999988 4444 556666677888
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCCch--------HHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 330 KEHKQFDMAERVIKQALRMVKPENDGG--------VFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 330 ~~~~~~~~a~~~~~~~~~~~~~~~~~~--------~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
.+.|++++|..++....+.+.. +... .....+.+|.+.|++..|++-|..+.+
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~-~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVD-PLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCC-cccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999999999998877731 2222 224567788999999999887766654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.1e-10 Score=93.17 Aligned_cols=247 Identities=13% Similarity=0.089 Sum_probs=139.8
Q ss_pred HHHHcCCChHHHHHHHhhCCC--C--ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccch
Q 048364 89 KGYSKSGNVCEARDFFERMPL--R--NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSV 164 (400)
Q Consensus 89 ~~~~~~~~~~~a~~~~~~~~~--~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~ 164 (400)
+-+.-.|++..++.-.+ ... + +......+.+++...|+++.++ .++. . +-.|.......+...+....+-
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~-~-~~~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIK-K-SSSPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS--T-TSSCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhc-c-CCChhHHHHHHHHHHHhCccch
Confidence 34556788888886555 221 1 2334555678888888876544 4443 2 2266666655555444432322
Q ss_pred hhhhhhhhhhHHHhcccc-chHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHH
Q 048364 165 GLLMGKSAHGFIVKNEWE-LNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQ 243 (400)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 243 (400)
+. +..-+......... .+..+......++...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.
T Consensus 83 e~--~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 83 ES--ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HC--HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22 22222221112212 23333333445566678888887777665 345555566777788888888888888877
Q ss_pred HCCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-
Q 048364 244 ATGVKPNEMTFTGVLTACVH----TGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP- 317 (400)
Q Consensus 244 ~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p- 317 (400)
+.+ .| .+...+..++.. .+.+.+|..+|+++.. ...+++.+.+.+..+....|++++|.+++.+. ...|
T Consensus 159 ~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 159 QID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp CCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred hcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 642 23 334444444332 2357778888888764 44566777777777777888888888777776 3333
Q ss_pred cHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCC
Q 048364 318 NVIIWGSFLAACKEHKQF-DMAERVIKQALRMVKP 351 (400)
Q Consensus 318 ~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~ 351 (400)
+..+...++.+....|+. +.+.+++.++.... |
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~-p 267 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQSN-P 267 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHT-T
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhC-C
Confidence 455666667666677766 56667777777766 5
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.14 E-value=8e-09 Score=86.87 Aligned_cols=217 Identities=11% Similarity=0.047 Sum_probs=95.1
Q ss_pred HHHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCC-CHHHHHHHHHHhhcccc
Q 048364 85 NTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTP-DQMTIGAVLSGCSHLGS 163 (400)
Q Consensus 85 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~ 163 (400)
.-+.+++...|+.+.++.-...-..|.......+...+...++-+.++.-+++.. .....+ +..........+...|+
T Consensus 39 ~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~-~~~~~~~~~~~~~~~A~i~~~~~~ 117 (290)
T PF04733_consen 39 FYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEELKELL-ADQAGESNEIVQLLAATILFHEGD 117 (290)
T ss_dssp HHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCC-CTS---CHHHHHHHHHHHHCCCCH
T ss_pred HHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHH-HhccccccHHHHHHHHHHHHHcCC
Confidence 3344555555655555444444344444444444333322233344444443333 222221 11122222233444555
Q ss_pred hhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCC-cccHHHHHHH----HHhCCChhhHHHH
Q 048364 164 VGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERN-VISWTALICG----SAHRGYSEDALSL 238 (400)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~l~~~----~~~~~~~~~a~~~ 238 (400)
++. |.+++... .+.......+.+|.+.++++.|.+.++.|.+-+ ..+...+..+ +...+.+.+|..+
T Consensus 118 ~~~--AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~ 189 (290)
T PF04733_consen 118 YEE--ALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYI 189 (290)
T ss_dssp HHH--HHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred HHH--HHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 555 55544432 233344445555666666666666666655421 1222222222 2222345666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCCh-HHHHHHHHhc
Q 048364 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFL-EEAYEVIRTM 313 (400)
Q Consensus 239 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~ 313 (400)
|+++.+. ..++..+.+.+..++...|++++|.+++++... .-+-++.+...++-+....|+. +.+.+.+..+
T Consensus 190 f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~--~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 190 FEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE--KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC--C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 6665443 344555555555566666666666666655542 1122344455555555555554 4445555555
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.4e-06 Score=75.47 Aligned_cols=361 Identities=13% Similarity=0.102 Sum_probs=211.4
Q ss_pred CCCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHHHhCCHHHHHHHHhhCCCCChhhHHHHHHHHH
Q 048364 13 PSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARKLFDELPERNAVTWNTMIKGYS 92 (400)
Q Consensus 13 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 92 (400)
+-|...+..=+-++.+.+.+++|+.+.+.=... ...+...|.-.-..|+.++.++|+..++...+.+..+...-...+.
T Consensus 43 pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~-~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlY 121 (652)
T KOG2376|consen 43 PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL-LVINSFFFEKAYCEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLY 121 (652)
T ss_pred CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh-hhcchhhHHHHHHHHHcccHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 445666777777888889999998554331110 0111111222222228899999999998555555556666777888
Q ss_pred cCCChHHHHHHHhhCCCC-------------------------------ChhhHHH---HHHHHHhcCCcchHHHHHHHH
Q 048364 93 KSGNVCEARDFFERMPLR-------------------------------NVASWSA---MIAAYLNAGAYDPGLKLFREM 138 (400)
Q Consensus 93 ~~~~~~~a~~~~~~~~~~-------------------------------~~~~~~~---l~~~~~~~g~~~~a~~~~~~m 138 (400)
+.+++++|.++|+.+... ...+|.. ....+...|++.+|+++++..
T Consensus 122 rl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA 201 (652)
T KOG2376|consen 122 RLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKA 201 (652)
T ss_pred HHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 899999999998877311 1113332 234566788899999888887
Q ss_pred Hh-------cCC-----CCCCHHH-HHHHHHHhhcccchhhhhhhhhhhHHHhccccch---HHHHHHHHHHHH------
Q 048364 139 IS-------NEG-----LTPDQMT-IGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELN---EQIATILVDMYA------ 196 (400)
Q Consensus 139 ~~-------~~~-----~~p~~~~-~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~------ 196 (400)
.+ ... +.-+..+ -..+.-++...|+.++ +..++..+.+....-. ....|.|+.+-.
T Consensus 202 ~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e--a~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d 279 (652)
T KOG2376|consen 202 LRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE--ASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFD 279 (652)
T ss_pred HHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH--HHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCc
Confidence 21 100 0111111 1223345667788888 8887777776553211 111122211100
Q ss_pred ---------------------------------------hcCCHHHHHHHHHhccCCC-cccHHHHHHHH--HhCCChhh
Q 048364 197 ---------------------------------------KCGFLKYALMVFELMEERN-VISWTALICGS--AHRGYSED 234 (400)
Q Consensus 197 ---------------------------------------~~g~~~~A~~~~~~~~~~~-~~~~~~l~~~~--~~~~~~~~ 234 (400)
-.+..+.+.++........ ...+.+++... ++...+..
T Consensus 280 ~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~k 359 (652)
T KOG2376|consen 280 GDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKK 359 (652)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhh
Confidence 0112222222222222211 12233333322 22234667
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHH--------HhhhhcCCCCChhhHHHHHHHHHhcCChHHH
Q 048364 235 ALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFK--------MIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA 306 (400)
Q Consensus 235 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 306 (400)
+.+++...-+....-........++.....|+++.|.+++. .+. +.+.. +.+...+...+.+.++-+.|
T Consensus 360 a~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~-~~~~~--P~~V~aiv~l~~~~~~~~~a 436 (652)
T KOG2376|consen 360 AIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSIL-EAKHL--PGTVGAIVALYYKIKDNDSA 436 (652)
T ss_pred hHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhh-hhccC--hhHHHHHHHHHHhccCCccH
Confidence 77777766554222223455566677788999999999998 444 22333 34455577778888887777
Q ss_pred HHHHHhc-----cCCccHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHH
Q 048364 307 YEVIRTM-----RLEPNVI----IWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERV 377 (400)
Q Consensus 307 ~~~~~~~-----~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 377 (400)
..++.+. .-.+... ++..+...-.+.|+-++|..+++++.+.+ | ++..+...++.+|++. +.+.|..+
T Consensus 437 ~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~-~d~~~l~~lV~a~~~~-d~eka~~l 513 (652)
T KOG2376|consen 437 SAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-P-NDTDLLVQLVTAYARL-DPEKAESL 513 (652)
T ss_pred HHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-C-chHHHHHHHHHHHHhc-CHHHHHHH
Confidence 7777665 1122222 33333444457899999999999999998 8 8999999999999987 66777776
Q ss_pred HHHHh
Q 048364 378 RKLML 382 (400)
Q Consensus 378 ~~~m~ 382 (400)
-+.+.
T Consensus 514 ~k~L~ 518 (652)
T KOG2376|consen 514 SKKLP 518 (652)
T ss_pred hhcCC
Confidence 65543
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.3e-06 Score=77.86 Aligned_cols=359 Identities=12% Similarity=0.059 Sum_probs=239.2
Q ss_pred CCCchh-HHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCCC---ChhhHHHH
Q 048364 13 PSDSFS-ILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPER---NAVTWNTM 87 (400)
Q Consensus 13 ~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~---~~~~~~~l 87 (400)
+|-..+ |...+. |-..+++...++..+.+++.-+. ...+....--.+ ..|+-++|....+..... +.+.|..+
T Consensus 4 ~~KE~~lF~~~lk-~yE~kQYkkgLK~~~~iL~k~~e-HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~ 81 (700)
T KOG1156|consen 4 SPKENALFRRALK-CYETKQYKKGLKLIKQILKKFPE-HGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVL 81 (700)
T ss_pred ChHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHhCCc-cchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHH
Confidence 444444 334444 44667888899988888873222 222222222223 889999999999888764 55789988
Q ss_pred HHHHHcCCChHHHHHHHhhCC---CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCH-HHHHHHHHHhhcccc
Q 048364 88 IKGYSKSGNVCEARDFFERMP---LRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQ-MTIGAVLSGCSHLGS 163 (400)
Q Consensus 88 ~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~ll~~~~~~~~ 163 (400)
.-.+-...++++|++.|.... +.|...|.-+.-.-.+.++++.....-.... ...|+. ..|.....++.-.|+
T Consensus 82 gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LL---ql~~~~ra~w~~~Avs~~L~g~ 158 (700)
T KOG1156|consen 82 GLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLL---QLRPSQRASWIGFAVAQHLLGE 158 (700)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHH---HhhhhhHHHHHHHHHHHHHHHH
Confidence 888888999999999999865 3367788877777788899999988888877 345554 467788888888899
Q ss_pred hhhhhhhhhhhHHHhcc-ccchHHHHHHH------HHHHHhcCCHHHHHHHHHhccCC--Cc-ccHHHHHHHHHhCCChh
Q 048364 164 VGLLMGKSAHGFIVKNE-WELNEQIATIL------VDMYAKCGFLKYALMVFELMEER--NV-ISWTALICGSAHRGYSE 233 (400)
Q Consensus 164 ~~~~~a~~~~~~~~~~~-~~~~~~~~~~l------~~~~~~~g~~~~A~~~~~~~~~~--~~-~~~~~l~~~~~~~~~~~ 233 (400)
... |..+.+...+.. ..|+...+.-. .......|..+.|.+.+...... |- ..-.+-...+.+.++.+
T Consensus 159 y~~--A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lE 236 (700)
T KOG1156|consen 159 YKM--ALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLE 236 (700)
T ss_pred HHH--HHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHH
Confidence 988 999998888766 34555544322 23345678888888887766542 22 22334456788999999
Q ss_pred hHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCChhhHH-HHHHHhhhh-------------------------------
Q 048364 234 DALSLFEMMQATGVKPNEMTFTGVLTACV-HTGLVDEGR-KYFKMIDEE------------------------------- 280 (400)
Q Consensus 234 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~-~~~~~~~~~------------------------------- 280 (400)
+|..++..+... .||...|...+..+. +-.+.-++. .+|....+.
T Consensus 237 eA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~ 314 (700)
T KOG1156|consen 237 EAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPL 314 (700)
T ss_pred hHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHH
Confidence 999999999987 567766655544433 222222222 333333221
Q ss_pred --cCCCCChhhHHHHHHHHHhcCChHH----HHHHHHhc-c------------CCccHH--HHHHHHHHHHhcCCHHHHH
Q 048364 281 --YDLEPRIQHYGCMVDLFGKAGFLEE----AYEVIRTM-R------------LEPNVI--IWGSFLAACKEHKQFDMAE 339 (400)
Q Consensus 281 --~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~-~------------~~p~~~--~~~~l~~~~~~~~~~~~a~ 339 (400)
.|+++ ++..+...|-.-...+- +..+...+ + -+|... ++..++..+-..|+++.|.
T Consensus 315 l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~ 391 (700)
T KOG1156|consen 315 LSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVAL 391 (700)
T ss_pred hhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHH
Confidence 12222 22333333322111111 11122222 1 145444 4566778889999999999
Q ss_pred HHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhccc
Q 048364 340 RVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQN 385 (400)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 385 (400)
.+++.++..- | .-...|..=++.+...|+.++|..++++..+..
T Consensus 392 ~yId~AIdHT-P-TliEly~~KaRI~kH~G~l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 392 EYIDLAIDHT-P-TLIELYLVKARIFKHAGLLDEAAAWLDEAQELD 435 (700)
T ss_pred HHHHHHhccC-c-hHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence 9999999998 7 777888888899999999999999999887644
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.6e-07 Score=79.12 Aligned_cols=153 Identities=10% Similarity=0.082 Sum_probs=68.3
Q ss_pred HHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hcCCh
Q 048364 193 DMYAKCGFLKYALMVFELMEE---RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVL-TACV-HTGLV 267 (400)
Q Consensus 193 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~-~~~~-~~~~~ 267 (400)
..+...|+.++|.-.|+.... -+..+|.-|+.+|...|++.+|..+-+...+. .+-+..+.+.+. ..|. ...--
T Consensus 342 ~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~r 420 (564)
T KOG1174|consen 342 RLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMR 420 (564)
T ss_pred HHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhH
Confidence 334444555555544444332 13444555555555555555554444333322 122333333221 1111 11223
Q ss_pred hhHHHHHHHhhhhcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHhc-cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048364 268 DEGRKYFKMIDEEYDLEPR-IQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNVIIWGSFLAACKEHKQFDMAERVIKQA 345 (400)
Q Consensus 268 ~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 345 (400)
++|.++++... ...|+ ....+.+...+...|..+++..++++. ...||....+.|...+...+.+++|...|..+
T Consensus 421 EKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~A 497 (564)
T KOG1174|consen 421 EKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKA 497 (564)
T ss_pred HHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 44444444444 22332 223344444455555555555555554 44455555555555555555555555555555
Q ss_pred HHcC
Q 048364 346 LRMV 349 (400)
Q Consensus 346 ~~~~ 349 (400)
++.+
T Consensus 498 Lr~d 501 (564)
T KOG1174|consen 498 LRQD 501 (564)
T ss_pred HhcC
Confidence 5555
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.8e-06 Score=74.96 Aligned_cols=355 Identities=12% Similarity=0.099 Sum_probs=202.5
Q ss_pred hcccchhHHHHHHHHHHHHhC-cccchhhhhHHHHHH-HhCCHHHHHHHHhhCCCCChhhHHHHHHHHHcCCChHHHHHH
Q 048364 26 CTHFNNLTVIHHLHSHILKLG-FISHVYVATSLLHEY-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDF 103 (400)
Q Consensus 26 ~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 103 (400)
+...|+...-...|+..+..- +.-...+|...+... ..|-.+.+..+++.-.+-++..-+..|..+++.+++++|.+.
T Consensus 112 l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~ 191 (835)
T KOG2047|consen 112 LIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQR 191 (835)
T ss_pred HHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHH
Confidence 344566666666666665542 233445677777777 777777888888887776766677778888888888888777
Q ss_pred HhhCCC--------------------------C--------------------C--hhhHHHHHHHHHhcCCcchHHHHH
Q 048364 104 FERMPL--------------------------R--------------------N--VASWSAMIAAYLNAGAYDPGLKLF 135 (400)
Q Consensus 104 ~~~~~~--------------------------~--------------------~--~~~~~~l~~~~~~~g~~~~a~~~~ 135 (400)
+..... | | ...|++|..-|.+.|++++|.++|
T Consensus 192 la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvy 271 (835)
T KOG2047|consen 192 LATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVY 271 (835)
T ss_pred HHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 655520 1 1 135888889999999999999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHhhcccchhh--------------------hhhhhhhhHHHhccc-----------cch
Q 048364 136 REMISNEGLTPDQMTIGAVLSGCSHLGSVGL--------------------LMGKSAHGFIVKNEW-----------ELN 184 (400)
Q Consensus 136 ~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~--------------------~~a~~~~~~~~~~~~-----------~~~ 184 (400)
++.. . ......-|..+..+|+.-..... .+...-++.+..... +.+
T Consensus 272 eeai-~--~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~n 348 (835)
T KOG2047|consen 272 EEAI-Q--TVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHN 348 (835)
T ss_pred HHHH-H--hheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCcc
Confidence 8877 2 23344445555555543221110 000111111111100 001
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhccC---C------CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC---HH
Q 048364 185 EQIATILVDMYAKCGFLKYALMVFELMEE---R------NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPN---EM 252 (400)
Q Consensus 185 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~ 252 (400)
+..|..-+. ...|+..+-...|.+..+ | -...|..+...|-..|+.+.|..+|++..+...+-- ..
T Consensus 349 V~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~ 426 (835)
T KOG2047|consen 349 VEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAE 426 (835)
T ss_pred HHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHH
Confidence 111111111 122444444555544432 1 123577778888888899999888888776533211 23
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhhhc----------CCCC------ChhhHHHHHHHHHhcCChHHHHHHHHhc---
Q 048364 253 TFTGVLTACVHTGLVDEGRKYFKMIDEEY----------DLEP------RIQHYGCMVDLFGKAGFLEEAYEVIRTM--- 313 (400)
Q Consensus 253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----------~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~--- 313 (400)
+|..-...-.+..+++.|.++++....-. +.++ +...|...++.--..|-++....+++++
T Consensus 427 vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidL 506 (835)
T KOG2047|consen 427 VWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDL 506 (835)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34334444456677888888877665210 0011 1233444555555667777777777777
Q ss_pred c-CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhh---cccchHHHHHHHHHHhcccccc
Q 048364 314 R-LEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYT---MNEKWEGAERVRKLMLNQNVRK 388 (400)
Q Consensus 314 ~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~a~~~~~~m~~~~~~~ 388 (400)
. ..|-.. ......+-.+.-++++.+.+++-+....++.-...|+..+.-+. ...+.+.|+.+|++..+ |..|
T Consensus 507 riaTPqii--~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp 582 (835)
T KOG2047|consen 507 RIATPQII--INYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPP 582 (835)
T ss_pred hcCCHHHH--HHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCH
Confidence 2 223222 11222333455678888888888888744233445555444443 23478899999999988 5544
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.6e-07 Score=71.63 Aligned_cols=356 Identities=10% Similarity=0.062 Sum_probs=198.1
Q ss_pred CchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHHHhCCHHHHHHHHhhCCCC-ChhhHHHHHH--HH
Q 048364 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARKLFDELPER-NAVTWNTMIK--GY 91 (400)
Q Consensus 15 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~l~~--~~ 91 (400)
+....+.|..+|-+..++..|-..++++...-++-...-+-..-+.|+.+.+.+|+.+...|... +...-..-+. ..
T Consensus 43 ~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIk 122 (459)
T KOG4340|consen 43 SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIK 122 (459)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 44445555555555555555555555554432221111111111122555555555555555432 1111111111 12
Q ss_pred HcCCChHHHHHHHhhCC-CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhh
Q 048364 92 SKSGNVCEARDFFERMP-LRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGK 170 (400)
Q Consensus 92 ~~~~~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~ 170 (400)
...+++..+..+.++.. +.+..+.+.......+.|+++.|++-|+...+-.|..|- ..|+.-+ +..+.++.+. |.
T Consensus 123 Yse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl-lAYniAL-aHy~~~qyas--AL 198 (459)
T KOG4340|consen 123 YSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL-LAYNLAL-AHYSSRQYAS--AL 198 (459)
T ss_pred cccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCch-hHHHHHH-HHHhhhhHHH--HH
Confidence 34566667777777766 345666666666777899999999999998866677665 4565544 4446677777 88
Q ss_pred hhhhHHHhccccc-------------hH---------------HHHHHHHHHHHhcCCHHHHHHHHHhccC-----CCcc
Q 048364 171 SAHGFIVKNEWEL-------------NE---------------QIATILVDMYAKCGFLKYALMVFELMEE-----RNVI 217 (400)
Q Consensus 171 ~~~~~~~~~~~~~-------------~~---------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~ 217 (400)
....++.++|+.. |+ ..+|.-...+.+.|+++.|.+.+-.|+. .|++
T Consensus 199 k~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPv 278 (459)
T KOG4340|consen 199 KHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPV 278 (459)
T ss_pred HHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCch
Confidence 8888888776531 11 1122233345678899999999988874 3666
Q ss_pred cHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCC-CChhhHHHHHHH
Q 048364 218 SWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLE-PRIQHYGCMVDL 296 (400)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~ 296 (400)
|...+.-. -..+++.+..+-+.-+..... ....||..++-.||+..-++.|-.++.+-.. .... .+...|+ |+++
T Consensus 279 TLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~-lTyk~L~~Yly~-LLda 354 (459)
T KOG4340|consen 279 TLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAH-LTYKFLTPYLYD-LLDA 354 (459)
T ss_pred hhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcc-hhHHHhhHHHHH-HHHH
Confidence 66655422 223455555555666666533 4567888888899998888888887754431 1111 1233333 3444
Q ss_pred HH-hcCChHHHHHHHHhccCCccHHHHHHHHHHHH-hcCC----HHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccc
Q 048364 297 FG-KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACK-EHKQ----FDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEK 370 (400)
Q Consensus 297 ~~-~~g~~~~a~~~~~~~~~~p~~~~~~~l~~~~~-~~~~----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 370 (400)
+. ..-..++|++-+..+.-.-....-...+..-. +..+ ...+.+-+++..+.-.| +...-.+.|.+..+
T Consensus 355 LIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~YLP-----VlMa~AkiyW~~~D 429 (459)
T KOG4340|consen 355 LITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKYLP-----VLMAQAKIYWNLED 429 (459)
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhhccccc
Confidence 43 34456666666655510000111111112111 1111 23344445555554423 44556677889999
Q ss_pred hHHHHHHHHHHhc
Q 048364 371 WEGAERVRKLMLN 383 (400)
Q Consensus 371 ~~~a~~~~~~m~~ 383 (400)
+..+.++|..-.+
T Consensus 430 y~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 430 YPMVEKIFRKSVE 442 (459)
T ss_pred cHHHHHHHHHHHh
Confidence 9999999987664
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.1e-07 Score=74.34 Aligned_cols=289 Identities=13% Similarity=0.100 Sum_probs=165.5
Q ss_pred chhhhhHHHHHH-HhCCHHHHHHHHhhCCCCChhhHHHHH---HHHHcCCChHHHHHHHhhCCCCChhhHHHH---HHHH
Q 048364 50 HVYVATSLLHEY-VVTSFGFARKLFDELPERNAVTWNTMI---KGYSKSGNVCEARDFFERMPLRNVASWSAM---IAAY 122 (400)
Q Consensus 50 ~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l---~~~~ 122 (400)
++.-.--+-..+ ..|++.+|+.-|....+-|+..|.++- ..|...|+...|+.-|+++.+..+..+.+- ...+
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhh
Confidence 333444555666 889999999999999988887777765 467788888888888888774433333333 3467
Q ss_pred HhcCCcchHHHHHHHHHhcCCCCCCHHH----------------HHHHHHHhhcccchhhhhhhhhhhHHHhccccchHH
Q 048364 123 LNAGAYDPGLKLFREMISNEGLTPDQMT----------------IGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQ 186 (400)
Q Consensus 123 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~----------------~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 186 (400)
.+.|++++|..=|+..++. .|+..+ ....+..+...|+... +......+++.. +.+..
T Consensus 117 lK~Gele~A~~DF~~vl~~---~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~--ai~~i~~llEi~-~Wda~ 190 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQH---EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQN--AIEMITHLLEIQ-PWDAS 190 (504)
T ss_pred hhcccHHHHHHHHHHHHhc---CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhh--HHHHHHHHHhcC-cchhH
Confidence 8899999999999998832 332211 1222333444555555 555555555543 34555
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHH-------H
Q 048364 187 IATILVDMYAKCGFLKYALMVFELMEE---RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFT-------G 256 (400)
Q Consensus 187 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-------~ 256 (400)
.+..-..+|...|+...|+.-++...+ .+..++..+-..+...|+.+.++...++-++. .||....- .
T Consensus 191 l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkK 268 (504)
T KOG0624|consen 191 LRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKK 268 (504)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHH
Confidence 666666666666666666655444332 44555555556666666666666666665553 34432211 1
Q ss_pred HHHHHH------hcCChhhHHHHHHHhhhhcCCCCC-----hhhHHHHHHHHHhcCChHHHHHHHHhc-cCCcc-HHHHH
Q 048364 257 VLTACV------HTGLVDEGRKYFKMIDEEYDLEPR-----IQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPN-VIIWG 323 (400)
Q Consensus 257 l~~~~~------~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~-~~~~~ 323 (400)
+...+. +.++|.++....+...+. .|. ...+..+-.++...|++.+|++...+. .+.|| +.++.
T Consensus 269 v~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~ 345 (504)
T KOG0624|consen 269 VVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLC 345 (504)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHH
Confidence 111111 123444444444444421 121 122333444555556666666655555 44453 44555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 324 SFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 324 ~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
--..+|.-...+++|+.-|+.+.+.+
T Consensus 346 dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 346 DRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 55556655556666666666666655
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.1e-07 Score=78.29 Aligned_cols=199 Identities=9% Similarity=-0.043 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCC-CCCH--HHHHHHHH
Q 048364 186 QIATILVDMYAKCGFLKYALMVFELMEE--R-NVISWTALICGSAHRGYSEDALSLFEMMQATGV-KPNE--MTFTGVLT 259 (400)
Q Consensus 186 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~--~~~~~l~~ 259 (400)
.....+...+...|++++|.+.+++..+ | +...+..+...+...|++++|...+++...... .|+. ..|..+..
T Consensus 115 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~ 194 (355)
T cd05804 115 YLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLAL 194 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHH
Confidence 3444566677888888888888888775 2 445667777888888888888888888776432 1222 23456777
Q ss_pred HHHhcCChhhHHHHHHHhhhhcCCCCChhhH-H--HHHHHHHhcCChHHHHHH--H-Hhc-cCCcc---HHHHHHHHHHH
Q 048364 260 ACVHTGLVDEGRKYFKMIDEEYDLEPRIQHY-G--CMVDLFGKAGFLEEAYEV--I-RTM-RLEPN---VIIWGSFLAAC 329 (400)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~a~~~--~-~~~-~~~p~---~~~~~~l~~~~ 329 (400)
.+...|++++|..+++.........+..... + .++.-+...|....+.+. + ... ...|. .........++
T Consensus 195 ~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~ 274 (355)
T cd05804 195 FYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALAL 274 (355)
T ss_pred HHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 7888888998888888875321111111111 1 223333344433333222 1 111 10011 12223456677
Q ss_pred HhcCCHHHHHHHHHHHHHcCCC-------CCCchHHHHHHHHhhcccchHHHHHHHHHHhcc
Q 048364 330 KEHKQFDMAERVIKQALRMVKP-------ENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 330 ~~~~~~~~a~~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
...|+.+.|..+++.+...... ............++...|++++|.+.+......
T Consensus 275 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 275 AGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred hcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7888899999888887764311 012334445555667889999999888877653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.01 E-value=9.6e-07 Score=74.56 Aligned_cols=261 Identities=10% Similarity=0.041 Sum_probs=189.6
Q ss_pred CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHH----HHHHHHHhhcccchhhhhhhhhhhHHHhccccch
Q 048364 109 LRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMT----IGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELN 184 (400)
Q Consensus 109 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~----~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 184 (400)
.-|+.....+..++...|+.++|+..|++.+ .+.|+..+ |..++ ...|+.+. ...+...+....- .+
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~---~~dpy~i~~MD~Ya~LL---~~eg~~e~--~~~L~~~Lf~~~~-~t 299 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTL---CANPDNVEAMDLYAVLL---GQEGGCEQ--DSALMDYLFAKVK-YT 299 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHh---hCChhhhhhHHHHHHHH---HhccCHhh--HHHHHHHHHhhhh-cc
Confidence 3478888899999999999999999999987 55665432 44343 34555555 4444444433221 11
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhccCCCc---ccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048364 185 EQIATILVDMYAKCGFLKYALMVFELMEERNV---ISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTAC 261 (400)
Q Consensus 185 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 261 (400)
..-|-.-+......++++.|..+-++..+.+. ..|-.-...+...|++++|.-.|+...... +.+...|..|+++|
T Consensus 300 a~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsY 378 (564)
T KOG1174|consen 300 ASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSY 378 (564)
T ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHH
Confidence 12222223334466788899988888776443 444444577889999999999999887652 34678999999999
Q ss_pred HhcCChhhHHHHHHHhhhhcCCCCChhhHHHHH-HHHH-hcCChHHHHHHHHhc-cCCccH-HHHHHHHHHHHhcCCHHH
Q 048364 262 VHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMV-DLFG-KAGFLEEAYEVIRTM-RLEPNV-IIWGSFLAACKEHKQFDM 337 (400)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~a~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~ 337 (400)
...|++.+|...-+...+ -++.+..+...+. ..+. .-.--++|.+++++. .+.|+- ...+.+...|...|+.++
T Consensus 379 LA~~~~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D 456 (564)
T KOG1174|consen 379 LAQKRFKEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKD 456 (564)
T ss_pred HhhchHHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccch
Confidence 999999999888877764 3444555555442 2222 233457899999987 778864 467788889999999999
Q ss_pred HHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhcc
Q 048364 338 AERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 338 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
++.++++.+... +|......|...+...+.+.+|++.|......
T Consensus 457 ~i~LLe~~L~~~---~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 457 IIKLLEKHLIIF---PDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHHHHHhhc---cccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 999999999887 48889999999999999999999998877653
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.7e-07 Score=74.50 Aligned_cols=186 Identities=12% Similarity=0.111 Sum_probs=109.7
Q ss_pred hhhHHHHHH-HhCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHcCCChHHHHHHHhhCC--CCChhhHHH-HHHHHHhc
Q 048364 53 VATSLLHEY-VVTSFGFARKLFDELPER---NAVTWNTMIKGYSKSGNVCEARDFFERMP--LRNVASWSA-MIAAYLNA 125 (400)
Q Consensus 53 ~~~~l~~~~-~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~-l~~~~~~~ 125 (400)
-+++.+..+ +..++++|++++..-.++ +....+.+..+|.+..++..|.+.++++. .|...-|.. -...+-+.
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence 355666666 778888888887766653 44556777778888888888888888876 343333332 24556677
Q ss_pred CCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHh--hcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHH
Q 048364 126 GAYDPGLKLFREMISNEGLTPDQMTIGAVLSGC--SHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKY 203 (400)
Q Consensus 126 g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 203 (400)
+.+.+|+++...|. + .|....-..-+.+. ...+++.. +..+.+..-.. -+..+.+.......+.|+++.
T Consensus 92 ~i~ADALrV~~~~~-D---~~~L~~~~lqLqaAIkYse~Dl~g--~rsLveQlp~e---n~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 92 CIYADALRVAFLLL-D---NPALHSRVLQLQAAIKYSEGDLPG--SRSLVEQLPSE---NEADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred cccHHHHHHHHHhc-C---CHHHHHHHHHHHHHHhcccccCcc--hHHHHHhccCC---CccchhccchheeeccccHHH
Confidence 88888888888776 2 13322222222222 23344444 44444433221 233444444555556777777
Q ss_pred HHHHHHhccC----CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCC
Q 048364 204 ALMVFELMEE----RNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248 (400)
Q Consensus 204 A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 248 (400)
|.+-|+...+ .....||..+. +.+.|+++.|++...++.++|++
T Consensus 163 AvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhh
Confidence 7777766665 23345554443 33556677777777777776653
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.1e-06 Score=74.12 Aligned_cols=293 Identities=12% Similarity=0.034 Sum_probs=141.8
Q ss_pred hHHHHHHHhcccchhHHHHHHHHHHHHhCc-ccchhhhhHHHH-HH-HhCCHHHHHHHHhhCCC--C-ChhhHHH---HH
Q 048364 18 SILHILKSCTHFNNLTVIHHLHSHILKLGF-ISHVYVATSLLH-EY-VVTSFGFARKLFDELPE--R-NAVTWNT---MI 88 (400)
Q Consensus 18 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~-~~-~~g~~~~a~~~~~~~~~--~-~~~~~~~---l~ 88 (400)
.|..+...+...|+.+.+.+.+....+... .++......+-. .+ ..|++++|...+++..+ | +...+.. ..
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~ 87 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAF 87 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHH
Confidence 344444555555666666555555444322 122211111111 12 66677777776666542 2 2222221 11
Q ss_pred HHHHcCCChHHHHHHHhhCCCC---ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchh
Q 048364 89 KGYSKSGNVCEARDFFERMPLR---NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVG 165 (400)
Q Consensus 89 ~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~ 165 (400)
......+..+.+.+.++..... .......+...+...|++++|.+.+++.. ...|+
T Consensus 88 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al---~~~p~------------------ 146 (355)
T cd05804 88 GLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRAL---ELNPD------------------ 146 (355)
T ss_pred HhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCC------------------
Confidence 1111234444444444432211 12233334445566666666666666665 12232
Q ss_pred hhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCC-----Cc--ccHHHHHHHHHhCCChhhHHHH
Q 048364 166 LLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEER-----NV--ISWTALICGSAHRGYSEDALSL 238 (400)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~--~~~~~l~~~~~~~~~~~~a~~~ 238 (400)
+...+..+..+|...|++++|...+++..+. +. ..|..+...+...|++++|..+
T Consensus 147 ------------------~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~ 208 (355)
T cd05804 147 ------------------DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAI 208 (355)
T ss_pred ------------------CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 2334455666666777777777777665541 11 1234566677777888888888
Q ss_pred HHHHHHCCC-CCCHHHH-H--HHHHHHHhcCChhhHHHH---HHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 048364 239 FEMMQATGV-KPNEMTF-T--GVLTACVHTGLVDEGRKY---FKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIR 311 (400)
Q Consensus 239 ~~~m~~~~~-~p~~~~~-~--~l~~~~~~~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 311 (400)
+++...... .+..... + .++.-+...|....+.+. ......................++...|+.+.|...++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~ 288 (355)
T cd05804 209 YDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLA 288 (355)
T ss_pred HHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 877654322 1111111 1 222223333433333332 11111100001111222245667778888999988888
Q ss_pred hc--cCCc---c------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 312 TM--RLEP---N------VIIWGSFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 312 ~~--~~~p---~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
.+ .... . ....-....++...|+.++|.+.+.+.....
T Consensus 289 ~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 289 ALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 77 1111 1 1122222334568899999999998887654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.8e-08 Score=87.02 Aligned_cols=218 Identities=14% Similarity=0.099 Sum_probs=161.2
Q ss_pred hcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCC---CcccHHHHHHHHHhCCChhhH
Q 048364 159 SHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEER---NVISWTALICGSAHRGYSEDA 235 (400)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a 235 (400)
.+.|++.. |.-.|+..++.. +-+...|..|.......++-..|+..+.+..+- |....-.|.-.|...|.-..|
T Consensus 296 m~nG~L~~--A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 296 MKNGDLSE--AALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HhcCCchH--HHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHH
Confidence 45666666 666666666654 336677777877777888888888888877763 445566666778888888888
Q ss_pred HHHHHHHHHCCCC-----C---CHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHH
Q 048364 236 LSLFEMMQATGVK-----P---NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAY 307 (400)
Q Consensus 236 ~~~~~~m~~~~~~-----p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 307 (400)
+..++.-.....+ + +...-.. ..+.....+....++|-.+....+..+|+.+...|.-.|--.|++++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 8888887654211 0 0000000 1111222334445566555555565688888999999999999999999
Q ss_pred HHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 308 EVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 308 ~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
+.|+.. .++| |..+||.|...++...+.++|+..|+++++.. | .-.++...|+..|...|.|++|.+.|=..+.
T Consensus 451 Dcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq-P-~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 451 DCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ-P-GYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC-C-CeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 999998 7778 56689999999999999999999999999999 8 8889999999999999999999987766543
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.9e-07 Score=71.86 Aligned_cols=138 Identities=13% Similarity=0.115 Sum_probs=80.3
Q ss_pred HHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHh----
Q 048364 224 CGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK---- 299 (400)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 299 (400)
..|++.|++++|++..+... +......=+..+.+..+.+-|.+.++.|.. -.+..+.+.|..++.+
T Consensus 116 ~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~----ided~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQ----IDEDATLTQLAQAWVKLATG 185 (299)
T ss_pred HHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----cchHHHHHHHHHHHHHHhcc
Confidence 44666666666666655411 222333333445556666666666666662 1234455555555443
Q ss_pred cCChHHHHHHHHhc--cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHH
Q 048364 300 AGFLEEAYEVIRTM--RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEG 373 (400)
Q Consensus 300 ~g~~~~a~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 373 (400)
.+.+.+|.-+|++| ...|+..+.+....++...|++++|..++++++... + .++.+...++-+-...|.-.+
T Consensus 186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~-~dpetL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-A-KDPETLANLIVLALHLGKDAE 259 (299)
T ss_pred chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-C-CCHHHHHHHHHHHHHhCCChH
Confidence 34566666677776 356666666666666666777777777777777666 5 566666666665555555433
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.5e-06 Score=82.92 Aligned_cols=320 Identities=13% Similarity=0.032 Sum_probs=206.2
Q ss_pred HhCCHHHHHHHHhhCCC----CChhhHHHHHHHHHcCCChHHHHHHHhhCC----CC----C----hhhHHHHHHHHHhc
Q 048364 62 VVTSFGFARKLFDELPE----RNAVTWNTMIKGYSKSGNVCEARDFFERMP----LR----N----VASWSAMIAAYLNA 125 (400)
Q Consensus 62 ~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~----~----~~~~~~l~~~~~~~ 125 (400)
..|+++.+...++.++. .+..........+...|++++|...+.... .. + ......+...+...
T Consensus 386 ~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 465 (903)
T PRK04841 386 NQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIND 465 (903)
T ss_pred hcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhC
Confidence 66778888888877742 233333444555667899999988887643 11 1 11222234456789
Q ss_pred CCcchHHHHHHHHHhcCCCCCCH----HHHHHHHHHhhcccchhhhhhhhhhhHHHhccc-----cchHHHHHHHHHHHH
Q 048364 126 GAYDPGLKLFREMISNEGLTPDQ----MTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW-----ELNEQIATILVDMYA 196 (400)
Q Consensus 126 g~~~~a~~~~~~m~~~~~~~p~~----~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~ 196 (400)
|++++|...+++...... ..+. ...+.+...+...|+++. +...+........ .........+...+.
T Consensus 466 g~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~lg~~~~~~G~~~~--A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 466 GDPEEAERLAELALAELP-LTWYYSRIVATSVLGEVHHCKGELAR--ALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred CCHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 999999999998873211 1111 234555666778899998 8887777664321 112345566777888
Q ss_pred hcCCHHHHHHHHHhccC-------CC----cccHHHHHHHHHhCCChhhHHHHHHHHHHCC--CCC--CHHHHHHHHHHH
Q 048364 197 KCGFLKYALMVFELMEE-------RN----VISWTALICGSAHRGYSEDALSLFEMMQATG--VKP--NEMTFTGVLTAC 261 (400)
Q Consensus 197 ~~g~~~~A~~~~~~~~~-------~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~p--~~~~~~~l~~~~ 261 (400)
..|+++.|...+++... ++ ...+..+...+...|++++|...+++..... ..+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 99999999998877653 11 1223445566777899999999998875531 112 233444566677
Q ss_pred HhcCChhhHHHHHHHhhhhcCCCCChhhH-----HHHHHHHHhcCChHHHHHHHHhc-cCC-ccH----HHHHHHHHHHH
Q 048364 262 VHTGLVDEGRKYFKMIDEEYDLEPRIQHY-----GCMVDLFGKAGFLEEAYEVIRTM-RLE-PNV----IIWGSFLAACK 330 (400)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~a~~~~~~~-~~~-p~~----~~~~~l~~~~~ 330 (400)
...|+.++|...++....-.........+ ...+..+...|+.+.|...+... ... ... ..+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 88999999999988875321111111111 11224456689999999998776 111 111 12345677888
Q ss_pred hcCCHHHHHHHHHHHHHcCC----CCCCchHHHHHHHHhhcccchHHHHHHHHHHhcc
Q 048364 331 EHKQFDMAERVIKQALRMVK----PENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 331 ~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
..|++++|...++++..... +.....+...+..++.+.|+.++|...+.+..+.
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999877521 1123356778888899999999999998888753
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.1e-05 Score=72.08 Aligned_cols=332 Identities=14% Similarity=0.151 Sum_probs=208.4
Q ss_pred hhhhhHHHHHH-HhCCHHHHHHHHhhCCC-----CChhhHHHHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHHh
Q 048364 51 VYVATSLLHEY-VVTSFGFARKLFDELPE-----RNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLN 124 (400)
Q Consensus 51 ~~~~~~l~~~~-~~g~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 124 (400)
+.+|-..+..+ ++|++...+..|+.... .-...|...+......+-++-++.++++-..-++..-+--+..+++
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~ 181 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAK 181 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 34566666677 78888888888877653 2345688888888889999999999999887777777888899999
Q ss_pred cCCcchHHHHHHHHHhcCC-----CCCCHHHHHHHHHHhhcccchhh-hhhhhhhhHHHhccccchHHHHHHHHHHHHhc
Q 048364 125 AGAYDPGLKLFREMISNEG-----LTPDQMTIGAVLSGCSHLGSVGL-LMGKSAHGFIVKNEWELNEQIATILVDMYAKC 198 (400)
Q Consensus 125 ~g~~~~a~~~~~~m~~~~~-----~~p~~~~~~~ll~~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 198 (400)
.+++++|.+.+...+.+.. -+.+...|..+-...++..+.-. .-+..+++.....-...-...|++|.+.|.+.
T Consensus 182 ~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~ 261 (835)
T KOG2047|consen 182 SDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRS 261 (835)
T ss_pred ccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHh
Confidence 9999999999988873211 12333455555555544443322 00222333322222223356889999999999
Q ss_pred CCHHHHHHHHHhccCC--CcccHHHHHHHHHh----------------CCC------hhhHHHHHHHHHHCCC-------
Q 048364 199 GFLKYALMVFELMEER--NVISWTALICGSAH----------------RGY------SEDALSLFEMMQATGV------- 247 (400)
Q Consensus 199 g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~----------------~~~------~~~a~~~~~~m~~~~~------- 247 (400)
|++++|..+|++.... .+.-|..+.++|+. .|+ ++-.+.-|+.+...+.
T Consensus 262 g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVl 341 (835)
T KOG2047|consen 262 GLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVL 341 (835)
T ss_pred hhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHH
Confidence 9999999999887752 23333333333322 111 1222333333333210
Q ss_pred ---CC-CHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCC------hhhHHHHHHHHHhcCChHHHHHHHHhccCCc
Q 048364 248 ---KP-NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR------IQHYGCMVDLFGKAGFLEEAYEVIRTMRLEP 317 (400)
Q Consensus 248 ---~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p 317 (400)
.| +..+|..-+. ...|+..+-...|.++.+ .+.|. ...|..+.+.|-..|+++.|..+|++.-..|
T Consensus 342 LRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~--~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~ 417 (835)
T KOG2047|consen 342 LRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVK--TVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP 417 (835)
T ss_pred HhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHH--ccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC
Confidence 11 2222322222 234667777778877775 44442 2457788888889999999999999881111
Q ss_pred ------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----------------CCCchHHHHHHHHhhcccchHHHH
Q 048364 318 ------NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKP----------------ENDGGVFTLICDLYTMNEKWEGAE 375 (400)
Q Consensus 318 ------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------------~~~~~~~~~l~~~~~~~g~~~~a~ 375 (400)
=..+|..-...=.++.+++.|.++.+++.....+ ..+...|...+..-...|-++...
T Consensus 418 y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk 497 (835)
T KOG2047|consen 418 YKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTK 497 (835)
T ss_pred ccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHH
Confidence 1235555556666788888898888887654311 012335555566666778888888
Q ss_pred HHHHHHhcccc
Q 048364 376 RVRKLMLNQNV 386 (400)
Q Consensus 376 ~~~~~m~~~~~ 386 (400)
.+++++.+..+
T Consensus 498 ~vYdriidLri 508 (835)
T KOG2047|consen 498 AVYDRIIDLRI 508 (835)
T ss_pred HHHHHHHHHhc
Confidence 88888887665
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.4e-06 Score=75.95 Aligned_cols=98 Identities=13% Similarity=0.050 Sum_probs=66.9
Q ss_pred HHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCC--CC-hhhHHHHHHHHHcCCChHH
Q 048364 24 KSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPE--RN-AVTWNTMIKGYSKSGNVCE 99 (400)
Q Consensus 24 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~ 99 (400)
.+....|+++.|...|...+...+. |...|..-..++ ..|++++|++--.+-.+ |+ ...|+....++.-.|++++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence 3455678888888888887776544 777777777788 88888888776655543 33 3467888888888888888
Q ss_pred HHHHHhhCCCC---ChhhHHHHHHHH
Q 048364 100 ARDFFERMPLR---NVASWSAMIAAY 122 (400)
Q Consensus 100 a~~~~~~~~~~---~~~~~~~l~~~~ 122 (400)
|+..|.+-.+. |...++-+..++
T Consensus 89 A~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 89 AILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 88888775422 334444444443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.7e-07 Score=76.34 Aligned_cols=184 Identities=9% Similarity=-0.015 Sum_probs=122.4
Q ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHhccC--CC-c---ccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCH--HH
Q 048364 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEE--RN-V---ISWTALICGSAHRGYSEDALSLFEMMQATGVKPNE--MT 253 (400)
Q Consensus 182 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~ 253 (400)
+.....+..++..+...|+++.|...|+++.+ |+ . .++..+..++...|++++|...++++.+....... .+
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 34566777788888888999999888887765 32 1 35566778888888899999988888775322111 23
Q ss_pred HHHHHHHHHhc--------CChhhHHHHHHHhhhhcCCCCCh-hhHHHHHHHHHhcCChHHHHHHHHhccCCccHHHHHH
Q 048364 254 FTGVLTACVHT--------GLVDEGRKYFKMIDEEYDLEPRI-QHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGS 324 (400)
Q Consensus 254 ~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~~~~~~~ 324 (400)
+..+..++.+. |+.++|.+.++.+.+. .|+. ..+..+... +...... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHHH
Confidence 44445555543 6677788888887743 2332 222211111 0000000 001124
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCC--CCchHHHHHHHHhhcccchHHHHHHHHHHhcc
Q 048364 325 FLAACKEHKQFDMAERVIKQALRMVKPE--NDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 325 l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
+...+.+.|++++|...++++++.. |. ..+..+..++.++...|++++|..+++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENY-PDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHC-CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5667889999999999999999886 51 23578899999999999999999998887653
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.84 E-value=3e-06 Score=67.53 Aligned_cols=247 Identities=16% Similarity=0.069 Sum_probs=164.6
Q ss_pred HHcCCChHHHHHHHhhCC-C-CChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhh
Q 048364 91 YSKSGNVCEARDFFERMP-L-RNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLM 168 (400)
Q Consensus 91 ~~~~~~~~~a~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~ 168 (400)
+.-.|++..++..-.... . .++..-..+-++|...|++.....-.. .+-.|....+..+......-++.+..
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI~-----~~~~~~lqAvr~~a~~~~~e~~~~~~- 91 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEIK-----EGKATPLQAVRLLAEYLELESNKKSI- 91 (299)
T ss_pred HHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHcccccccccccc-----cccCChHHHHHHHHHHhhCcchhHHH-
Confidence 444567776666555433 2 234444456677777777765544332 22244444444444444334433331
Q ss_pred hhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCC
Q 048364 169 GKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248 (400)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 248 (400)
..++.+++.......+......-...|+..|++++|.+...... +....-.=...+.+..+.+-|...+++|.+..
T Consensus 92 ~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id-- 167 (299)
T KOG3081|consen 92 LASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQID-- 167 (299)
T ss_pred HHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--
Confidence 44555566655555554555555667899999999999988843 33333333456678888999999999998752
Q ss_pred CCHHHHHHHHHHHHh----cCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc--cCCccHHHH
Q 048364 249 PNEMTFTGVLTACVH----TGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM--RLEPNVIIW 322 (400)
Q Consensus 249 p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~p~~~~~ 322 (400)
+..|.+.|..++.+ .+.+.+|.-+|+++.. ..+|++.+.+....++...|++++|..++++. ....+..+.
T Consensus 168 -ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL 244 (299)
T KOG3081|consen 168 -EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETL 244 (299)
T ss_pred -hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHH
Confidence 66778877777665 4578999999999985 56889999999999999999999999999998 434466677
Q ss_pred HHHHHHHHhcCCHHH-HHHHHHHHHHcCCC
Q 048364 323 GSFLAACKEHKQFDM-AERVIKQALRMVKP 351 (400)
Q Consensus 323 ~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~ 351 (400)
..++.+-...|...+ ..+.+.+..... |
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~l~QLk~~~-p 273 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERNLSQLKLSH-P 273 (299)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcC-C
Confidence 777776666776544 456777776666 5
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.2e-05 Score=70.75 Aligned_cols=93 Identities=18% Similarity=0.131 Sum_probs=70.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcc
Q 048364 291 GCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368 (400)
Q Consensus 291 ~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 368 (400)
......+.+.+..++|...+.+. ++.| ....|......+...|+.++|.+.|......+ | .++.....++.++.+.
T Consensus 654 llaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P-~hv~s~~Ala~~lle~ 731 (799)
T KOG4162|consen 654 LLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-P-DHVPSMTALAELLLEL 731 (799)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-C-CCcHHHHHHHHHHHHh
Confidence 34445566667777777666666 4444 44566666677788899999999999999999 8 8899999999999999
Q ss_pred cchHHHHH--HHHHHhccc
Q 048364 369 EKWEGAER--VRKLMLNQN 385 (400)
Q Consensus 369 g~~~~a~~--~~~~m~~~~ 385 (400)
|+..-|.. ++..+.+.+
T Consensus 732 G~~~la~~~~~L~dalr~d 750 (799)
T KOG4162|consen 732 GSPRLAEKRSLLSDALRLD 750 (799)
T ss_pred CCcchHHHHHHHHHHHhhC
Confidence 98777777 777776643
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.1e-05 Score=66.67 Aligned_cols=295 Identities=11% Similarity=0.010 Sum_probs=203.9
Q ss_pred CchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCCCChhhHHHH---HHH
Q 048364 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPERNAVTWNTM---IKG 90 (400)
Q Consensus 15 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~l---~~~ 90 (400)
+..-..-+-+.+...|.+..|+.-|-..++..+..-..+|.. ...| ..|+-..|+.-+....+..+..+.+- ...
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrR-aT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRR-ATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHH-HHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchh
Confidence 344455566667777888888888877766432222222322 3345 88888888888888775444333333 346
Q ss_pred HHcCCChHHHHHHHhhCCCCCh------hh----------H--HHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHH
Q 048364 91 YSKSGNVCEARDFFERMPLRNV------AS----------W--SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIG 152 (400)
Q Consensus 91 ~~~~~~~~~a~~~~~~~~~~~~------~~----------~--~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 152 (400)
+.+.|.+++|..-|+.+...++ .+ | ...+..+...|+...|+.....++ + -.+.|...+.
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~ll-E-i~~Wda~l~~ 193 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLL-E-IQPWDASLRQ 193 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHH-h-cCcchhHHHH
Confidence 8899999999999998863221 11 1 223445677899999999999998 2 3356888888
Q ss_pred HHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCccc------HHHH----
Q 048364 153 AVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVIS------WTAL---- 222 (400)
Q Consensus 153 ~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~l---- 222 (400)
.-..+|...|++.. |..-+..+.+..-. +...+..+...+...|+.+.++...++..+-|+.. |..+
T Consensus 194 ~Rakc~i~~~e~k~--AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~ 270 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKK--AIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVV 270 (504)
T ss_pred HHHHHHHhcCcHHH--HHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHH
Confidence 89999999999887 66655555555433 44555567778889999999999998888743321 2211
Q ss_pred -----HHHHHhCCChhhHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCChhhHHHHHHHhhhhcCCCC-ChhhHHHH
Q 048364 223 -----ICGSAHRGYSEDALSLFEMMQATGVKPNEMT---FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP-RIQHYGCM 293 (400)
Q Consensus 223 -----~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l 293 (400)
+......++|.++++-.+...+........+ +..+-+++...+++.+|++.-.+.. .+.| |+.++.--
T Consensus 271 K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL---~~d~~dv~~l~dR 347 (504)
T KOG0624|consen 271 KSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL---DIDPDDVQVLCDR 347 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHH---hcCchHHHHHHHH
Confidence 2234567788888888888777643322333 3455566777899999999998888 4455 48888888
Q ss_pred HHHHHhcCChHHHHHHHHhc-cCCcc
Q 048364 294 VDLFGKAGFLEEAYEVIRTM-RLEPN 318 (400)
Q Consensus 294 ~~~~~~~g~~~~a~~~~~~~-~~~p~ 318 (400)
..+|.-...++.|..-|+.. ...++
T Consensus 348 AeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 348 AEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999988 54454
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=3e-07 Score=73.08 Aligned_cols=148 Identities=11% Similarity=0.064 Sum_probs=96.1
Q ss_pred HHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHH
Q 048364 192 VDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGR 271 (400)
Q Consensus 192 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 271 (400)
+-.|...|+++.+....+.+..+. . .+...++.++++..++...+.. +.+...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 455777888777655543333221 0 1223566677777776666653 346677777777777788888888
Q ss_pred HHHHHhhhhcCCCCChhhHHHHHHHH-HhcCC--hHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048364 272 KYFKMIDEEYDLEPRIQHYGCMVDLF-GKAGF--LEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQAL 346 (400)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 346 (400)
..|++..+ -.+.+...+..+..++ ...|+ .++|.+++++. ...| +...+..+...+.+.|++++|...|+++.
T Consensus 94 ~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88877773 2233556666666653 56566 47777777777 4445 55567777777777888888888888887
Q ss_pred HcCCC
Q 048364 347 RMVKP 351 (400)
Q Consensus 347 ~~~~~ 351 (400)
+.. |
T Consensus 172 ~l~-~ 175 (198)
T PRK10370 172 DLN-S 175 (198)
T ss_pred hhC-C
Confidence 777 5
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.6e-06 Score=71.70 Aligned_cols=180 Identities=12% Similarity=-0.028 Sum_probs=125.0
Q ss_pred CHHHHHHHHHHhhcccchhhhhhhhhhhHHHhcccc-c-hHHHHHHHHHHHHhcCCHHHHHHHHHhccC--CC-cc---c
Q 048364 147 DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE-L-NEQIATILVDMYAKCGFLKYALMVFELMEE--RN-VI---S 218 (400)
Q Consensus 147 ~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~---~ 218 (400)
....+......+...|+++. |...++.+.+.... | ....+..+..+|...|++++|...++++.+ |+ .. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~--A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTE--AIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 44567788888999999999 99999988776432 1 234677888999999999999999999875 32 22 3
Q ss_pred HHHHHHHHHhC--------CChhhHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhh
Q 048364 219 WTALICGSAHR--------GYSEDALSLFEMMQATGVKPNE-MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQH 289 (400)
Q Consensus 219 ~~~l~~~~~~~--------~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 289 (400)
+..+..++... |++++|.+.++++... .|+. .....+... .. . ..... ..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~------~~~~~---------~~ 168 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---L------RNRLA---------GK 168 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---H------HHHHH---------HH
Confidence 45555556554 7889999999999876 3443 222222111 00 0 00000 01
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhc-cCCc----cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 290 YGCMVDLFGKAGFLEEAYEVIRTM-RLEP----NVIIWGSFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 290 ~~~l~~~~~~~g~~~~a~~~~~~~-~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
...+...|.+.|++++|...+++. ...| ....+..+..++...|++++|..+++.+....
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 124667788999999999999887 3223 34578888899999999999999888887665
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.76 E-value=7e-09 Score=55.83 Aligned_cols=33 Identities=6% Similarity=0.146 Sum_probs=28.1
Q ss_pred CCCCCCchhHHHHHHHhcccchhHHHHHHHHHH
Q 048364 10 QSVPSDSFSILHILKSCTHFNNLTVIHHLHSHI 42 (400)
Q Consensus 10 ~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 42 (400)
+|++||..||+.||.++++.|++++|.++|++|
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 478888888888888888888888888888877
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.5e-06 Score=81.33 Aligned_cols=233 Identities=13% Similarity=0.079 Sum_probs=130.2
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHHhhCC--CC-ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 048364 80 NAVTWNTMIKGYSKSGNVCEARDFFERMP--LR-NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLS 156 (400)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~ 156 (400)
+...+..|+..+...+++++|.++.+... .| ....|-.+...+.+.++.+++..+ .+. +..+...-+..+-.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l---~~~~~~~~~~~ve~ 104 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLI---DSFSQNLKWAIVEH 104 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhh---hhcccccchhHHHH
Confidence 45567777777777777777777777544 23 233444444466677776666655 333 22222222222222
Q ss_pred HhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHhCCChh
Q 048364 157 GCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE---RNVISWTALICGSAHRGYSE 233 (400)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 233 (400)
.|...++... +...+..+..+|-+.|+.++|..+++++.+ .|+.+.|.+...|... +.+
T Consensus 105 ~~~~i~~~~~-----------------~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 105 ICDKILLYGE-----------------NKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred HHHHHHhhhh-----------------hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHH
Confidence 2222222222 334556677777777777777777777765 3556677777777777 777
Q ss_pred hHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc
Q 048364 234 DALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313 (400)
Q Consensus 234 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 313 (400)
+|..++.+.... +...+++..+..+|..+.. ..+.+...+-.+.+..... .
T Consensus 167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~------------~ 217 (906)
T PRK14720 167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGH------------R 217 (906)
T ss_pred HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhh------------h
Confidence 777777665543 4445566666666666663 1122222222222211111 1
Q ss_pred cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhh
Q 048364 314 RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYT 366 (400)
Q Consensus 314 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 366 (400)
+...-+.++--+...|...++++++..+++.+++.. | .+..+...++.+|.
T Consensus 218 ~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~-~n~~a~~~l~~~y~ 268 (906)
T PRK14720 218 EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-N-KNNKAREELIRFYK 268 (906)
T ss_pred ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-C-cchhhHHHHHHHHH
Confidence 122223344445556666677777777777777777 6 56666777776665
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.7e-08 Score=54.34 Aligned_cols=32 Identities=25% Similarity=0.550 Sum_probs=15.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHh
Q 048364 246 GVKPNEMTFTGVLTACVHTGLVDEGRKYFKMI 277 (400)
Q Consensus 246 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 277 (400)
|+.||..||+++|.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.9e-05 Score=72.67 Aligned_cols=172 Identities=13% Similarity=0.123 Sum_probs=101.3
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048364 184 NEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVH 263 (400)
Q Consensus 184 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 263 (400)
+...|..-....-..|+.+.|+.+|.... -|.+++...|-.|+.++|-.+-++ .| |......+.+.|..
T Consensus 911 d~~L~~WWgqYlES~GemdaAl~~Y~~A~-----D~fs~VrI~C~qGk~~kAa~iA~e---sg---d~AAcYhlaR~YEn 979 (1416)
T KOG3617|consen 911 DESLYSWWGQYLESVGEMDAALSFYSSAK-----DYFSMVRIKCIQGKTDKAARIAEE---SG---DKAACYHLARMYEN 979 (1416)
T ss_pred chHHHHHHHHHHhcccchHHHHHHHHHhh-----hhhhheeeEeeccCchHHHHHHHh---cc---cHHHHHHHHHHhhh
Confidence 33445555555566788888888887654 355666667777777777776543 22 45555567777778
Q ss_pred cCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHH---------------HhcCChHHHHHHHHhccCCccHHHHHHHHHH
Q 048364 264 TGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF---------------GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328 (400)
Q Consensus 264 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~---------------~~~g~~~~a~~~~~~~~~~p~~~~~~~l~~~ 328 (400)
.|++.+|..+|.+... +.+.|+.| ....+.-.|-.+|++.|.. +...+..
T Consensus 980 ~g~v~~Av~FfTrAqa----------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~-----~~~AVmL 1044 (1416)
T KOG3617|consen 980 DGDVVKAVKFFTRAQA----------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGY-----AHKAVML 1044 (1416)
T ss_pred hHHHHHHHHHHHHHHH----------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchh-----hhHHHHH
Confidence 8888888777766542 11222211 1222333445555555321 1222334
Q ss_pred HHhcCCHHHHHHHHH---------HH-HHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHh
Q 048364 329 CKEHKQFDMAERVIK---------QA-LRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLML 382 (400)
Q Consensus 329 ~~~~~~~~~a~~~~~---------~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 382 (400)
|-+.|.+.+|+++-= -+ .+.. +..|+.....-...++...+|++|..++-...
T Consensus 1045 YHkAGm~~kALelAF~tqQf~aL~lIa~DLd-~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1045 YHKAGMIGKALELAFRTQQFSALDLIAKDLD-AGSDPKLLRRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred HHhhcchHHHHHHHHhhcccHHHHHHHHhcC-CCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 555555555544321 11 1233 55688888888888999999999888766543
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.4e-06 Score=67.16 Aligned_cols=155 Identities=13% Similarity=0.126 Sum_probs=110.2
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHh
Q 048364 220 TALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299 (400)
Q Consensus 220 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 299 (400)
..+-..+...|+-+....+....... ..-|.......+....+.|++..|...+++... .-++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 44556666777777777776664433 122444555577777788888888888888774 556677888888888888
Q ss_pred cCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHH
Q 048364 300 AGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERV 377 (400)
Q Consensus 300 ~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 377 (400)
.|+++.|..-|.+. .+.| +...++.+.-.+.-.|+.+.|..++....... + .+..+-..+..+....|++++|..+
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~-ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-A-ADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-C-CchHHHHHHHHHHhhcCChHHHHhh
Confidence 88888888777776 4445 34566777777777888888888888887776 5 6777777888888888888887765
Q ss_pred HH
Q 048364 378 RK 379 (400)
Q Consensus 378 ~~ 379 (400)
..
T Consensus 225 ~~ 226 (257)
T COG5010 225 AV 226 (257)
T ss_pred cc
Confidence 43
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.7e-06 Score=80.07 Aligned_cols=224 Identities=11% Similarity=0.077 Sum_probs=152.5
Q ss_pred HHHHHHHHHhhcccchhhhhhhhhhhHHHhcc-c---cchHHHHHHHHHHHHhcCCHHHHHHHHHhccC-CC-cccHHHH
Q 048364 149 MTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE-W---ELNEQIATILVDMYAKCGFLKYALMVFELMEE-RN-VISWTAL 222 (400)
Q Consensus 149 ~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~-~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~l 222 (400)
..|-..+.-....++.+. |.++.+++++.= + +--..+|.++++.-..-|.-+...++|+++.+ -| ...|..|
T Consensus 1459 i~WI~YMaf~LelsEiek--AR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEK--ARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred hHHHHHHHHHhhhhhhHH--HHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 445555666666666666 666666555421 1 11234566666666666777788888888876 23 4568888
Q ss_pred HHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCC
Q 048364 223 ICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF 302 (400)
Q Consensus 223 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 302 (400)
...|.+.+++++|.++|+.|.+. ..-....|...+..+.+.++-+.|..++.++.+...-.-........++.-.+.|+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 88899999999999999998775 22356778888888888888888888888888531111134445555666678899
Q ss_pred hHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhh-cccchHHHH
Q 048364 303 LEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYT-MNEKWEGAE 375 (400)
Q Consensus 303 ~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~ 375 (400)
.+++..+|+.. .-.| -...|+..++.-.++|+.+.+..+|++++.++.+......+.-....|. ..|+-+.+.
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 99998888887 2233 5567888888888999999999999999988864344444444444444 346544443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.9e-06 Score=66.77 Aligned_cols=148 Identities=10% Similarity=0.078 Sum_probs=111.0
Q ss_pred HHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCC
Q 048364 223 ICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF 302 (400)
Q Consensus 223 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 302 (400)
+..|...|+++.+....+.+.. |. . .+...++.+++...++...+ .-+.+...|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCC
Confidence 3568888888876544432221 11 0 12235666777777777774 335677889999999999999
Q ss_pred hHHHHHHHHhc-cCCc-cHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHH
Q 048364 303 LEEAYEVIRTM-RLEP-NVIIWGSFLAAC-KEHKQ--FDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERV 377 (400)
Q Consensus 303 ~~~a~~~~~~~-~~~p-~~~~~~~l~~~~-~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 377 (400)
+++|...|++. ...| +...+..+..++ ...|+ .++|.+++++..+.+ | .+..++..++..+...|++++|+..
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P-~~~~al~~LA~~~~~~g~~~~Ai~~ 166 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-A-NEVTALMLLASDAFMQADYAQAIEL 166 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-C-CChhHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999988 5566 556777777764 66676 589999999999999 8 8889999999999999999999999
Q ss_pred HHHHhcccc
Q 048364 378 RKLMLNQNV 386 (400)
Q Consensus 378 ~~~m~~~~~ 386 (400)
++++.+..-
T Consensus 167 ~~~aL~l~~ 175 (198)
T PRK10370 167 WQKVLDLNS 175 (198)
T ss_pred HHHHHhhCC
Confidence 999887544
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.4e-06 Score=82.50 Aligned_cols=200 Identities=11% Similarity=0.098 Sum_probs=167.9
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHhccCC--------CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHH
Q 048364 184 NEQIATILVDMYAKCGFLKYALMVFELMEER--------NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFT 255 (400)
Q Consensus 184 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 255 (400)
+...|-..|......++.++|++++++.... -...|.++++.-...|.-+...++|+++.+.. . .-..|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d-~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-D-AYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-c-hHHHHH
Confidence 4566777888888999999999999988751 23467788877777888888999999988752 1 235678
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCcc---HHHHHHHHHHHHh
Q 048364 256 GVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPN---VIIWGSFLAACKE 331 (400)
Q Consensus 256 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~---~~~~~~l~~~~~~ 331 (400)
.|...|.+.+..++|.++++.|.++++ .....|...+..+.++++-+.|..++.+. ..-|. .....-.+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 899999999999999999999998665 67788999999999999999999999988 44554 3345556666778
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhccccccc
Q 048364 332 HKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKA 389 (400)
Q Consensus 332 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 389 (400)
.|+.+.+..+|+..+... | .....|+..++.-.++|+.+.++.+|++.+..++.|.
T Consensus 1613 ~GDaeRGRtlfEgll~ay-P-KRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAY-P-KRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred cCCchhhHHHHHHHHhhC-c-cchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 999999999999999998 8 8889999999999999999999999999999888653
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.72 E-value=7.2e-06 Score=70.15 Aligned_cols=223 Identities=16% Similarity=0.076 Sum_probs=130.9
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHH-HHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHH
Q 048364 114 SWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMT-IGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILV 192 (400)
Q Consensus 114 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~-~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 192 (400)
++..+-..+...++.++|+.++.+++ .+.|+..+ |+..-
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI---~lnP~~ytaW~~R~------------------------------------- 78 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVI---RLNPGNYTVWHFRR------------------------------------- 78 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHH---HHCchhHHHHHHHH-------------------------------------
Confidence 34444455666778888888888887 34555432 22211
Q ss_pred HHHHhcC-CHHHHHHHHHhccCC---CcccHHHHHHHHHhCCCh--hhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048364 193 DMYAKCG-FLKYALMVFELMEER---NVISWTALICGSAHRGYS--EDALSLFEMMQATGVKPNEMTFTGVLTACVHTGL 266 (400)
Q Consensus 193 ~~~~~~g-~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~--~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 266 (400)
.++...| ++++++..++++.+. +..+|+.....+.+.|+. ++++..++++.+...+ |..+|+....++...|+
T Consensus 79 ~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~ 157 (320)
T PLN02789 79 LCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGG 157 (320)
T ss_pred HHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhh
Confidence 1222223 356666666665542 333444443334444442 5567777777665432 56667777777777777
Q ss_pred hhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhc---CCh----HHHHHHHHhc-cCCc-cHHHHHHHHHHHHh----cC
Q 048364 267 VDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA---GFL----EEAYEVIRTM-RLEP-NVIIWGSFLAACKE----HK 333 (400)
Q Consensus 267 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~----~~ 333 (400)
++++++.++++.+. + +.+...|+.....+.+. |.. +++.++..++ ...| |...|+.+...+.. .+
T Consensus 158 ~~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~ 235 (320)
T PLN02789 158 WEDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALV 235 (320)
T ss_pred HHHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccc
Confidence 77777777777742 2 33455566555554443 222 3455555444 4455 45566666666665 23
Q ss_pred CHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhccc------------------chHHHHHHHHHH
Q 048364 334 QFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNE------------------KWEGAERVRKLM 381 (400)
Q Consensus 334 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~m 381 (400)
+..+|...+.+....+ | .++.+...|+..|+... ..++|.++++.+
T Consensus 236 ~~~~~~~~~~~~~~~~-~-~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 236 SDPEVSSVCLEVLSKD-S-NHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred cchhHHHHHHHhhccc-C-CcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHH
Confidence 4566888888877766 6 67778888888887532 236678888777
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=1e-06 Score=66.24 Aligned_cols=108 Identities=9% Similarity=-0.097 Sum_probs=71.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHh
Q 048364 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKE 331 (400)
Q Consensus 254 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~ 331 (400)
+.....++...|++++|...|+.+.. --+.+...+..+..++.+.|++++|...|+.. ...| +...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 44455666677777777777777763 22335666777777777777777777777777 4444 55566777777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHh
Q 048364 332 HKQFDMAERVIKQALRMVKPENDGGVFTLICDLY 365 (400)
Q Consensus 332 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 365 (400)
.|++++|...+++.++.. | .++..+.....+.
T Consensus 105 ~g~~~eAi~~~~~Al~~~-p-~~~~~~~~~~~~~ 136 (144)
T PRK15359 105 MGEPGLAREAFQTAIKMS-Y-ADASWSEIRQNAQ 136 (144)
T ss_pred cCCHHHHHHHHHHHHHhC-C-CChHHHHHHHHHH
Confidence 777777777777777777 6 5666665544443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=8.9e-05 Score=74.35 Aligned_cols=292 Identities=12% Similarity=0.018 Sum_probs=185.0
Q ss_pred HHHHcCCChHHHHHHHhhCCC----CChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCC-----CCCHH--HHHHHHHH
Q 048364 89 KGYSKSGNVCEARDFFERMPL----RNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGL-----TPDQM--TIGAVLSG 157 (400)
Q Consensus 89 ~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-----~p~~~--~~~~ll~~ 157 (400)
......|+++.+...++.+.. .+..........+...|++++|..++........- .|... ....+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 345567888888888877741 12333334455567789999999999887522111 11111 12223344
Q ss_pred hhcccchhhhhhhhhhhHHHhccccch----HHHHHHHHHHHHhcCCHHHHHHHHHhccC-------CC--cccHHHHHH
Q 048364 158 CSHLGSVGLLMGKSAHGFIVKNEWELN----EQIATILVDMYAKCGFLKYALMVFELMEE-------RN--VISWTALIC 224 (400)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~--~~~~~~l~~ 224 (400)
+...|+++. +...++...+.....+ ....+.+...+...|+++.|...+.+... +. ..++..+..
T Consensus 462 ~~~~g~~~~--A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 462 AINDGDPEE--AERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHhCCCHHH--HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 567888888 8888887765321111 23445667778889999999999887763 11 124455667
Q ss_pred HHHhCCChhhHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcC-CCC--ChhhHHHHH
Q 048364 225 GSAHRGYSEDALSLFEMMQAT----GVK--P-NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYD-LEP--RIQHYGCMV 294 (400)
Q Consensus 225 ~~~~~~~~~~a~~~~~~m~~~----~~~--p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~--~~~~~~~l~ 294 (400)
.+...|++++|...+++.... +.. + ....+..+...+...|++++|...++....... ..+ ....+..+.
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 619 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLA 619 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHH
Confidence 788899999999998876552 221 1 223344555667778999999999887753211 112 233455566
Q ss_pred HHHHhcCChHHHHHHHHhc-cC---CccHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCch----HHHHH
Q 048364 295 DLFGKAGFLEEAYEVIRTM-RL---EPNVIIW-----GSFLAACKEHKQFDMAERVIKQALRMVKPENDGG----VFTLI 361 (400)
Q Consensus 295 ~~~~~~g~~~~a~~~~~~~-~~---~p~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l 361 (400)
..+...|+++.|...+++. .+ ......+ ...+..+...|+.+.|...+....... + .... ....+
T Consensus 620 ~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~-~-~~~~~~~~~~~~~ 697 (903)
T PRK04841 620 KISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPE-F-ANNHFLQGQWRNI 697 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCC-C-ccchhHHHHHHHH
Confidence 7788999999999988876 11 1111111 112244556889999999987765433 2 1111 14567
Q ss_pred HHHhhcccchHHHHHHHHHHhcc
Q 048364 362 CDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 362 ~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
..++...|++++|...+++....
T Consensus 698 a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 698 ARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 78889999999999999988754
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.68 E-value=7.7e-06 Score=74.33 Aligned_cols=166 Identities=16% Similarity=0.116 Sum_probs=80.3
Q ss_pred HhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHH
Q 048364 157 GCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDAL 236 (400)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 236 (400)
+......|.. |..+++-+.+... ...-|..+.+.|...|+++.|.++|-+. ..++-.|..|.+.|+|++|.
T Consensus 741 aai~akew~k--ai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~-----~~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 741 AAIGAKEWKK--AISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA-----DLFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred HHhhhhhhhh--hHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc-----chhHHHHHHHhccccHHHHH
Confidence 3344444555 5555544443321 1122344555666666666666666443 23444556666666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhccCC
Q 048364 237 SLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLE 316 (400)
Q Consensus 237 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 316 (400)
++-.+. .|.......|.+-..-+-+.|++.+|+++|-.+. .|+. .|..|-+.|..++.+++..+..-.
T Consensus 812 kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~~-----aiqmydk~~~~ddmirlv~k~h~d 879 (1636)
T KOG3616|consen 812 KLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGD 879 (1636)
T ss_pred HHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----CchH-----HHHHHHhhCcchHHHHHHHHhChh
Confidence 654433 2223334444444444555666666665554332 2332 345555666666655555554101
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048364 317 PNVIIWGSFLAACKEHKQFDMAERVIK 343 (400)
Q Consensus 317 p~~~~~~~l~~~~~~~~~~~~a~~~~~ 343 (400)
.-..|...+..-+-..|+...|+..|-
T Consensus 880 ~l~dt~~~f~~e~e~~g~lkaae~~fl 906 (1636)
T KOG3616|consen 880 HLHDTHKHFAKELEAEGDLKAAEEHFL 906 (1636)
T ss_pred hhhHHHHHHHHHHHhccChhHHHHHHH
Confidence 112233444444555555555554443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.2e-06 Score=78.27 Aligned_cols=131 Identities=11% Similarity=0.109 Sum_probs=81.3
Q ss_pred CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHH
Q 048364 215 NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPN-EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCM 293 (400)
Q Consensus 215 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 293 (400)
++..+..|.......|.+++|..+++...+. .|+ ......+..++.+.+++++|....++... .-+.+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 3555666666666677777777777666664 343 34455566666666777777766666663 223344555566
Q ss_pred HHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 294 VDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 294 ~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
..++...|++++|..+|++. .-.| +..++..+..++...|+.++|...|+++.+..
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 66666677777777777666 2233 34566666666666677777777777766665
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=5e-07 Score=67.98 Aligned_cols=107 Identities=10% Similarity=-0.048 Sum_probs=91.6
Q ss_pred HHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048364 271 RKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRM 348 (400)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 348 (400)
+.++++.. ...|+ .+..+...+...|++++|...|+.. ...| +...|..+..++...|++++|...|+++...
T Consensus 13 ~~~~~~al---~~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLL---SVDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH---HcCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34555555 23444 3556788899999999999999998 5566 6778899999999999999999999999999
Q ss_pred CCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhcc
Q 048364 349 VKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 349 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
+ | .++.++..++.++...|++++|+..++...+.
T Consensus 88 ~-p-~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 88 D-A-SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred C-C-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9 8 99999999999999999999999999998764
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.66 E-value=0.00018 Score=68.11 Aligned_cols=242 Identities=15% Similarity=0.094 Sum_probs=129.4
Q ss_pred hhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHH
Q 048364 112 VASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATIL 191 (400)
Q Consensus 112 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 191 (400)
+..|..+..+-.+.|...+|++-|-+.- |+..|.-++..+.+.|.+++ -.+++...++..-+|.+. +.|
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyikad-------Dps~y~eVi~~a~~~~~~ed--Lv~yL~MaRkk~~E~~id--~eL 1172 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKAD-------DPSNYLEVIDVASRTGKYED--LVKYLLMARKKVREPYID--SEL 1172 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhcC-------CcHHHHHHHHHHHhcCcHHH--HHHHHHHHHHhhcCccch--HHH
Confidence 4567888888888888888877765442 45578888888888888888 777777777766665544 467
Q ss_pred HHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHC--------------------CCCCCH
Q 048364 192 VDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQAT--------------------GVKPNE 251 (400)
Q Consensus 192 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--------------------~~~p~~ 251 (400)
+-+|++.++..+-++++. .||......+..-|...|.++.|.-+|...... .-..+.
T Consensus 1173 i~AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ 1249 (1666)
T KOG0985|consen 1173 IFAYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANST 1249 (1666)
T ss_pred HHHHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccch
Confidence 788888888777665542 244444444445555555555444444321100 001123
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCcc-HHHHHHHHHHH
Q 048364 252 MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPN-VIIWGSFLAAC 329 (400)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~-~~~~~~l~~~~ 329 (400)
.||.-+-.+|...+.+.-| +|. ..++-....-..-++..|-..|-+++...+++.. |++.- ...|+.|.-.|
T Consensus 1250 ktWK~VcfaCvd~~EFrlA-----QiC-GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLY 1323 (1666)
T KOG0985|consen 1250 KTWKEVCFACVDKEEFRLA-----QIC-GLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILY 1323 (1666)
T ss_pred hHHHHHHHHHhchhhhhHH-----Hhc-CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHH
Confidence 3444444444433333222 111 0111122233445566666666666666666554 44332 22444444444
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHH
Q 048364 330 KEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLM 381 (400)
Q Consensus 330 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 381 (400)
.+- ++++..+.++-....-.. --+++++....-|.+..-++.+-
T Consensus 1324 sky-kp~km~EHl~LFwsRvNi-------pKviRA~eqahlW~ElvfLY~~y 1367 (1666)
T KOG0985|consen 1324 SKY-KPEKMMEHLKLFWSRVNI-------PKVIRAAEQAHLWSELVFLYDKY 1367 (1666)
T ss_pred Hhc-CHHHHHHHHHHHHHhcch-------HHHHHHHHHHHHHHHHHHHHHhh
Confidence 443 455555555444433211 23445555555666655555443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.2e-06 Score=75.97 Aligned_cols=165 Identities=15% Similarity=0.137 Sum_probs=121.0
Q ss_pred HHHHHhcCCHHHHHHHHHhccCCCcc--cHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhh
Q 048364 192 VDMYAKCGFLKYALMVFELMEERNVI--SWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDE 269 (400)
Q Consensus 192 ~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 269 (400)
+.+......|.+|..+++.+...+.. -|..+...|...|+++.|.++|.+.- .++-.|..|.+.|+|+.
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHH
Confidence 45556778888899998888765443 47778899999999999999986531 25567788999999999
Q ss_pred HHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 270 GRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 270 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
|.++-++.. |.......|..-..-+-+.|++.+|.++|-.++ .|+. .|..|-+.|..+..+++.++-...
T Consensus 810 a~kla~e~~---~~e~t~~~yiakaedldehgkf~eaeqlyiti~-~p~~-----aiqmydk~~~~ddmirlv~k~h~d- 879 (1636)
T KOG3616|consen 810 AFKLAEECH---GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-EPDK-----AIQMYDKHGLDDDMIRLVEKHHGD- 879 (1636)
T ss_pred HHHHHHHhc---CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-CchH-----HHHHHHhhCcchHHHHHHHHhChh-
Confidence 988877665 555667777777777889999999999998887 5654 467888899888888877654321
Q ss_pred CCCCCchHHHHHHHHhhcccchHHHHHHH
Q 048364 350 KPENDGGVFTLICDLYTMNEKWEGAERVR 378 (400)
Q Consensus 350 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 378 (400)
.-..|...+..-|...|+...|.+-|
T Consensus 880 ---~l~dt~~~f~~e~e~~g~lkaae~~f 905 (1636)
T KOG3616|consen 880 ---HLHDTHKHFAKELEAEGDLKAAEEHF 905 (1636)
T ss_pred ---hhhHHHHHHHHHHHhccChhHHHHHH
Confidence 23345555555566666665555444
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.6e-06 Score=78.38 Aligned_cols=211 Identities=12% Similarity=0.118 Sum_probs=98.3
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHh
Q 048364 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAK 197 (400)
Q Consensus 118 l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 197 (400)
+...+.+.|-...|+.+|++.. .+..++-+|...|+.++ |..+...-.+ -+|++..|..+.+..-.
T Consensus 404 laell~slGitksAl~I~Erle----------mw~~vi~CY~~lg~~~k--aeei~~q~le--k~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFERLE----------MWDPVILCYLLLGQHGK--AEEINRQELE--KDPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHcchHHHHHHHHHhHH----------HHHHHHHHHHHhcccch--HHHHHHHHhc--CCCcchhHHHhhhhccC
Confidence 4444555555555555555443 23344445555554444 4444444333 24455555555554444
Q ss_pred cCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHh
Q 048364 198 CGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMI 277 (400)
Q Consensus 198 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 277 (400)
..-+++|.++++..... +-..+.....+.++++++.+.|+.-.+.. +....+|-.+..+..+.++++.|.+.|...
T Consensus 470 ~s~yEkawElsn~~sar---A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rc 545 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR---AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRC 545 (777)
T ss_pred hHHHHHHHHHhhhhhHH---HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence 44455555555443321 11111111222455555555555443331 113344444555555555555555555555
Q ss_pred hhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cC-CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048364 278 DEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RL-EPNVIIWGSFLAACKEHKQFDMAERVIKQALRM 348 (400)
Q Consensus 278 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 348 (400)
.. .-+.+...||.+-.+|.+.|+-.+|...+.+. .. .-+...|...+....+.|.+++|.+.+.++.+.
T Consensus 546 vt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 546 VT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred hh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 42 22223445555555555555555555555555 11 122234444444555555555555555555543
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=3e-06 Score=74.71 Aligned_cols=247 Identities=12% Similarity=0.094 Sum_probs=165.8
Q ss_pred HHHhcCCcchHHHHHHHHHhcCCCCC-CHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcC
Q 048364 121 AYLNAGAYDPGLKLFREMISNEGLTP-DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCG 199 (400)
Q Consensus 121 ~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 199 (400)
-+.+.|++.+|.-.|+..+++ .| +...|..|-......++-.. |...+....+.. +-+..+.-.|.-.|...|
T Consensus 294 ~lm~nG~L~~A~LafEAAVkq---dP~haeAW~~LG~~qaENE~E~~--ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQ---DPQHAEAWQKLGITQAENENEQN--AISALRRCLELD-PTNLEALMALAVSYTNEG 367 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhh---ChHHHHHHHHhhhHhhhccchHH--HHHHHHHHHhcC-CccHHHHHHHHHHHhhhh
Confidence 355677777777777777622 33 34566666666666665555 666666665554 225566677778888888
Q ss_pred CHHHHHHHHHhccCCC-cccHHHHH---------HHHHhCCChhhHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCChh
Q 048364 200 FLKYALMVFELMEERN-VISWTALI---------CGSAHRGYSEDALSLFEMMQA-TGVKPNEMTFTGVLTACVHTGLVD 268 (400)
Q Consensus 200 ~~~~A~~~~~~~~~~~-~~~~~~l~---------~~~~~~~~~~~a~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~~~~~ 268 (400)
.-..|.+.++.-.... ...|.... ..+..........++|-++.. .+..+|......|.-.|--.|+++
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred hHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 8888888887654210 00000000 112222233455566655544 444467777777777788899999
Q ss_pred hHHHHHHHhhhhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCccHH-HHHHHHHHHHhcCCHHHHHHHHHHH
Q 048364 269 EGRKYFKMIDEEYDLEP-RIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNVI-IWGSFLAACKEHKQFDMAERVIKQA 345 (400)
Q Consensus 269 ~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~ 345 (400)
+|...|+.++. ++| |..+||.|.-.++...+.++|+..|++. .+.|.-+ ....|.-+|...|.+++|...|-.+
T Consensus 448 raiDcf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 448 RAVDCFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 99999999984 355 6788999999999999999999999998 8888643 5666788999999999999999888
Q ss_pred HHcCC--------CCCCchHHHHHHHHhhcccchHHHHH
Q 048364 346 LRMVK--------PENDGGVFTLICDLYTMNEKWEGAER 376 (400)
Q Consensus 346 ~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~a~~ 376 (400)
+...- +..+...|..|=.++.-.++.+.+.+
T Consensus 525 L~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 525 LSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 76441 11223566666666666677664443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=7.6e-06 Score=74.19 Aligned_cols=195 Identities=16% Similarity=0.119 Sum_probs=141.2
Q ss_pred ccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048364 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTA 260 (400)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 260 (400)
.+|-...-..+...+...|-...|..+|+++. .|..++.+|+..|+..+|..+..+..+. +||+..|..+.+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhh
Confidence 34555555677778888888888888887754 4566777888888888888887776663 6677777766665
Q ss_pred HHhcC----------------------------ChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHh
Q 048364 261 CVHTG----------------------------LVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRT 312 (400)
Q Consensus 261 ~~~~~----------------------------~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 312 (400)
..... +++++.+.|+.-.+- .+....+|-.+.-+..+.+++..|.+.|..
T Consensus 467 ~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~--nplq~~~wf~~G~~ALqlek~q~av~aF~r 544 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEI--NPLQLGTWFGLGCAALQLEKEQAAVKAFHR 544 (777)
T ss_pred ccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhc--CccchhHHHhccHHHHHHhhhHHHHHHHHH
Confidence 44433 444444444443321 122345666677777788888888888887
Q ss_pred c-cCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhcccc
Q 048364 313 M-RLEPN-VIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNV 386 (400)
Q Consensus 313 ~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 386 (400)
. ...|| ...||.+-.+|.+.++-.+|...+.++.+.+ . .+...+........+-|.+++|.+.+.++.+...
T Consensus 545 cvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~-~~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 545 CVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-Y-QHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred HhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-C-CCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 7 55675 4578999999999999999999999998888 5 6778888888888888999999998888876443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.00012 Score=67.71 Aligned_cols=159 Identities=13% Similarity=0.083 Sum_probs=100.3
Q ss_pred cccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCC-CChhhHHHHHHHHHcCCChHHHHHHH
Q 048364 27 THFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPE-RNAVTWNTMIKGYSKSGNVCEARDFF 104 (400)
Q Consensus 27 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~ 104 (400)
...|..++|+.+|++.++.. .+=+.| ..|.+++|.++-+.-.+ .-..||.....-+-..++.+.|++.|
T Consensus 811 ieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~Aleyy 881 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYY 881 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHH
Confidence 35567777777777665532 233445 77777777777654433 12345666666666778888888887
Q ss_pred hhCCCC-----------------------ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcc
Q 048364 105 ERMPLR-----------------------NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHL 161 (400)
Q Consensus 105 ~~~~~~-----------------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~ 161 (400)
++...+ |...|.-.....-..|+.+.|+.+|.... -|-++++..|-.
T Consensus 882 EK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~----------D~fs~VrI~C~q 951 (1416)
T KOG3617|consen 882 EKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK----------DYFSMVRIKCIQ 951 (1416)
T ss_pred HhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh----------hhhhheeeEeec
Confidence 765421 33344444444555677777777777665 355666777777
Q ss_pred cchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 048364 162 GSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELME 212 (400)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 212 (400)
|+.++ |.++-++ .| |.....-|...|-..|++.+|..+|-+..
T Consensus 952 Gk~~k--Aa~iA~e---sg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 952 GKTDK--AARIAEE---SG---DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred cCchH--HHHHHHh---cc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 77777 5544332 22 55556667888888888888888876654
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.8e-05 Score=73.54 Aligned_cols=110 Identities=9% Similarity=0.037 Sum_probs=55.8
Q ss_pred CchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHH-HHHH-HhCCHHHHHHHHhhCCCCChhhHHHHHHHHH
Q 048364 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSL-LHEY-VVTSFGFARKLFDELPERNAVTWNTMIKGYS 92 (400)
Q Consensus 15 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 92 (400)
+...+..|+..+...+++++|.++.+...+. .|+...+-.+ ...+ ..++.+++..+ .++....
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~ 94 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFS 94 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhcc
Confidence 3455677777777777777777777755553 2332222111 1133 55554443333 2222222
Q ss_pred cCCChHHHHHHHhhCC--CCChhhHHHHHHHHHhcCCcchHHHHHHHHH
Q 048364 93 KSGNVCEARDFFERMP--LRNVASWSAMIAAYLNAGAYDPGLKLFREMI 139 (400)
Q Consensus 93 ~~~~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 139 (400)
...++.-+..+.+.|. ..+..++..+..+|-+.|+.++|..++++++
T Consensus 95 ~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L 143 (906)
T PRK14720 95 QNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLV 143 (906)
T ss_pred cccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 3333322222222222 1133456667777777777777777777776
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.00018 Score=68.09 Aligned_cols=250 Identities=11% Similarity=0.137 Sum_probs=156.6
Q ss_pred CCHHHHHHHHhhCCCCChhhHHHHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCC
Q 048364 64 TSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEG 143 (400)
Q Consensus 64 g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 143 (400)
+.++.|.+.-++.. .+..|+.+..+-.+.|.+.+|++-|-+.. |+..|.-+++...+.|.|++-.+++...+ +..
T Consensus 1089 ~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyikad--Dps~y~eVi~~a~~~~~~edLv~yL~MaR-kk~ 1163 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKAD--DPSNYLEVIDVASRTGKYEDLVKYLLMAR-KKV 1163 (1666)
T ss_pred hhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhcC--CcHHHHHHHHHHHhcCcHHHHHHHHHHHH-Hhh
Confidence 34444444444433 34579999999999999999999886544 67889999999999999999999987776 555
Q ss_pred CCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC----------
Q 048364 144 LTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE---------- 213 (400)
Q Consensus 144 ~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------- 213 (400)
-.|... +.++-+|++.++..+ .+.+. ..|+......+.+-+...|.++.|.-+|..+..
T Consensus 1164 ~E~~id--~eLi~AyAkt~rl~e--lE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~ 1232 (1666)
T KOG0985|consen 1164 REPYID--SELIFAYAKTNRLTE--LEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVY 1232 (1666)
T ss_pred cCccch--HHHHHHHHHhchHHH--HHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHH
Confidence 566554 467888888888766 33322 234555555555666666666666655543321
Q ss_pred --------------CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhh
Q 048364 214 --------------RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDE 279 (400)
Q Consensus 214 --------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 279 (400)
.+..+|..+-.+|...+.+.-| +|-..++.....-..-++.-|...|-+++.+.+++...
T Consensus 1233 LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L- 1306 (1666)
T KOG0985|consen 1233 LGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL- 1306 (1666)
T ss_pred HHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh-
Confidence 1333444444444444333322 23333334455566778888999999999999888776
Q ss_pred hcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHh----ccCC------ccHHHHHHHHHHHHhcCCHHHH
Q 048364 280 EYDLEP-RIQHYGCMVDLFGKAGFLEEAYEVIRT----MRLE------PNVIIWGSFLAACKEHKQFDMA 338 (400)
Q Consensus 280 ~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~----~~~~------p~~~~~~~l~~~~~~~~~~~~a 338 (400)
|+.- ....|+.|.-.|.+-+ +++..+-++- .+++ -....|+.+.-.|.+-..++.|
T Consensus 1307 --GLERAHMgmfTELaiLYskyk-p~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNA 1373 (1666)
T KOG0985|consen 1307 --GLERAHMGMFTELAILYSKYK-PEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNA 1373 (1666)
T ss_pred --chhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 4433 4556777777776643 4444433332 2321 1234566666666665555554
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.4e-05 Score=73.47 Aligned_cols=154 Identities=16% Similarity=0.173 Sum_probs=92.0
Q ss_pred hHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCCCC-----hhhHHHHHHHH
Q 048364 18 SILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPERN-----AVTWNTMIKGY 91 (400)
Q Consensus 18 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~~-----~~~~~~l~~~~ 91 (400)
.|..|...|+..-+...|.+.|+.+.+.... +...+......| +..+++.|..+.-...+.+ ...|....-.|
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 3555555555555566666666666553322 444555666666 6677777776643333321 12233344456
Q ss_pred HcCCChHHHHHHHhhCC---CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHH--Hhhcccchhh
Q 048364 92 SKSGNVCEARDFFERMP---LRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLS--GCSHLGSVGL 166 (400)
Q Consensus 92 ~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~--~~~~~~~~~~ 166 (400)
.+.++...|+.-|+... +.|...|..++.+|...|++..|+++|.+.. .+.|+.. |...-. .-+..|++.+
T Consensus 573 Lea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs---~LrP~s~-y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKAS---LLRPLSK-YGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred cCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhH---hcCcHhH-HHHHHHHHHHHHhhhHHH
Confidence 66777777777777654 3366778888999999999999999998876 5566642 222222 2345666666
Q ss_pred hhhhhhhhHHHh
Q 048364 167 LMGKSAHGFIVK 178 (400)
Q Consensus 167 ~~a~~~~~~~~~ 178 (400)
+...+..+..
T Consensus 649 --ald~l~~ii~ 658 (1238)
T KOG1127|consen 649 --ALDALGLIIY 658 (1238)
T ss_pred --HHHHHHHHHH
Confidence 5555555443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.00043 Score=57.91 Aligned_cols=314 Identities=11% Similarity=0.079 Sum_probs=190.7
Q ss_pred HHHHHH-HhCCHHHHHHHHhhCCCC--ChhhHHHHHH-HHHcCCChHHHHHHHhhCC--CC-ChhhHHHHHHHHHhcC--
Q 048364 56 SLLHEY-VVTSFGFARKLFDELPER--NAVTWNTMIK-GYSKSGNVCEARDFFERMP--LR-NVASWSAMIAAYLNAG-- 126 (400)
Q Consensus 56 ~l~~~~-~~g~~~~a~~~~~~~~~~--~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~l~~~~~~~g-- 126 (400)
++.... ..-.+.+|+.++..+... +-...|..+. +|.+..-++-+.++++.-. -| ++.+-|.......+.-
T Consensus 156 SLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ng 235 (557)
T KOG3785|consen 156 SLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLING 235 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhcc
Confidence 344444 556678888888888753 3334444443 3455555665555554432 12 3333343333332221
Q ss_pred ---------------------------------CcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhh
Q 048364 127 ---------------------------------AYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAH 173 (400)
Q Consensus 127 ---------------------------------~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~ 173 (400)
+-+.|++++-.+. .+.|. .-..++--|.+.+++.+ |..+.
T Consensus 236 r~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~---~~IPE--ARlNL~iYyL~q~dVqe--A~~L~ 308 (557)
T KOG3785|consen 236 RTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLM---KHIPE--ARLNLIIYYLNQNDVQE--AISLC 308 (557)
T ss_pred chhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHH---hhChH--hhhhheeeecccccHHH--HHHHH
Confidence 1223333333322 11222 22234445677788766 55544
Q ss_pred hHHHhccccchHHHHHHHHHH-----HHhcCCHHHHHHHHHhccC-----CCcccHHHHHHHHHhCCChhhHHHHHHHHH
Q 048364 174 GFIVKNEWELNEQIATILVDM-----YAKCGFLKYALMVFELMEE-----RNVISWTALICGSAHRGYSEDALSLFEMMQ 243 (400)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 243 (400)
..+.. ..|-..+...+..+ ........-|.+.|+-+-+ .+...-.++.+.+.-..++++++-.+..+.
T Consensus 309 Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~ 386 (557)
T KOG3785|consen 309 KDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIE 386 (557)
T ss_pred hhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33221 22333333333222 2222335567777776654 344567788899999999999999999888
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhccCCccHHHH-
Q 048364 244 ATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIW- 322 (400)
Q Consensus 244 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~~~~~- 322 (400)
.-=..-|..-| .+.++.+..|++.+|+++|-.+. ...++.+..-...|.++|.+++.++.|.+++-++.-..+..+.
T Consensus 387 sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is-~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLL 464 (557)
T KOG3785|consen 387 SYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRIS-GPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLL 464 (557)
T ss_pred HHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhc-ChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHH
Confidence 76443344444 47889999999999999998887 2233333333456788999999999999999998644455444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhccccccccCc
Q 048364 323 GSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGS 392 (400)
Q Consensus 323 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 392 (400)
..+..-|.+.+.+--|.+.|+.+...+ | ++.-| .|+-....-+|..+..+.-.|.|..
T Consensus 465 qlIAn~CYk~~eFyyaaKAFd~lE~lD-P--~pEnW---------eGKRGACaG~f~~l~~~~~~~~p~~ 522 (557)
T KOG3785|consen 465 QLIANDCYKANEFYYAAKAFDELEILD-P--TPENW---------EGKRGACAGLFRQLANHKTDPIPIS 522 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHccC-C--Ccccc---------CCccchHHHHHHHHHcCCCCCCchh
Confidence 445567889999999999999998888 5 55555 3555566677777777666666654
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.6e-06 Score=72.81 Aligned_cols=123 Identities=14% Similarity=0.151 Sum_probs=91.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHH
Q 048364 253 TFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACK 330 (400)
Q Consensus 253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~ 330 (400)
....++..+...++++.|..+++++.+. .|+ ....+++.+...++-.+|.+++++. ...| +......-...|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3445556666677888888888888743 244 3445777777777888888888777 3233 5556666677788
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHh
Q 048364 331 EHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLML 382 (400)
Q Consensus 331 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 382 (400)
+.++++.|..+.+++.... | .+..+|..|+.+|...|+++.|+..++.++
T Consensus 246 ~k~~~~lAL~iAk~av~ls-P-~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELS-P-SEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhC-c-hhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 8888888888888888888 7 788888888888888888888888888776
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00048 Score=60.73 Aligned_cols=336 Identities=13% Similarity=0.050 Sum_probs=170.9
Q ss_pred CCCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccch-hhhhHHHHHH-HhCCHHHHHHHHhhCCCC---ChhhHHHH
Q 048364 13 PSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHV-YVATSLLHEY-VVTSFGFARKLFDELPER---NAVTWNTM 87 (400)
Q Consensus 13 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~-~~g~~~~a~~~~~~~~~~---~~~~~~~l 87 (400)
++|-..|+.=..+++..|++++|++=-.+..+ +.|+- --|...-.++ -.|++++|+..|.+-.+. |...++-+
T Consensus 33 p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl 110 (539)
T KOG0548|consen 33 PTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGL 110 (539)
T ss_pred CCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhH
Confidence 34666688888899999999998877666655 45553 3677777888 899999999999887753 33344444
Q ss_pred HHHHHcC---C------------------------------------------------ChHHHHHHHhhC---------
Q 048364 88 IKGYSKS---G------------------------------------------------NVCEARDFFERM--------- 107 (400)
Q Consensus 88 ~~~~~~~---~------------------------------------------------~~~~a~~~~~~~--------- 107 (400)
..++... + ++..|.-.+...
T Consensus 111 ~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~ 190 (539)
T KOG0548|consen 111 AQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASG 190 (539)
T ss_pred HHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccc
Confidence 4443110 0 000111110000
Q ss_pred -------CCC------------C----------hhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHh
Q 048364 108 -------PLR------------N----------VASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGC 158 (400)
Q Consensus 108 -------~~~------------~----------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~ 158 (400)
..| | ..-+-.+.++..+..+++.|++-+.... .+.-+..-++....++
T Consensus 191 ~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~---el~~~it~~~n~aA~~ 267 (539)
T KOG0548|consen 191 IEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKAL---ELATDITYLNNIAAVY 267 (539)
T ss_pred cccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHH---hHhhhhHHHHHHHHHH
Confidence 000 0 0112334444555555555555555555 1122222333444445
Q ss_pred hcccchhhhhhhhhhhHHHhccccc------hHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCCh
Q 048364 159 SHLGSVGLLMGKSAHGFIVKNEWEL------NEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYS 232 (400)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 232 (400)
...|.... .........+.|-+. -...+..+..+|.+.++++.|...|.+...+... -....+....
T Consensus 268 ~e~~~~~~--c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~ 340 (539)
T KOG0548|consen 268 LERGKYAE--CIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEA 340 (539)
T ss_pred HhccHHHH--hhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHH
Confidence 55555544 333333333333211 0111122233444455555555555553321110 0011111222
Q ss_pred hhHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 048364 233 EDALSLFEMMQATGVKPNE-MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIR 311 (400)
Q Consensus 233 ~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 311 (400)
+++........-. .|.. .-...-...+.+.|++..|...|.++.+. .+.|...|....-+|.+.|.+..|+.-.+
T Consensus 341 Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~ 416 (539)
T KOG0548|consen 341 EKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAK 416 (539)
T ss_pred HHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3333322222211 1211 11111234456677777887777777753 24466777777777778887777777665
Q ss_pred hc-cCCccH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhh
Q 048364 312 TM-RLEPNV-IIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYT 366 (400)
Q Consensus 312 ~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 366 (400)
.. ...|+. ..|..=..++....++++|.+.|++.++.+ | .+......+.+++.
T Consensus 417 ~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d-p-~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 417 KCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD-P-SNAEAIDGYRRCVE 471 (539)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-c-hhHHHHHHHHHHHH
Confidence 55 344432 344444445555567777777777777777 6 55555555544444
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.5e-05 Score=66.32 Aligned_cols=117 Identities=19% Similarity=0.129 Sum_probs=89.8
Q ss_pred HHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCcc-HHHHHHHHHHHHhcCCHHHH
Q 048364 261 CVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPN-VIIWGSFLAACKEHKQFDMA 338 (400)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a 338 (400)
+...|++++|+..++.+.+ ..+.|+..+....+.+.+.++.++|.+.++++ ...|+ ....-.+..++.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence 4467888888888888875 33445566666777888888888888888888 66676 45566777888888888888
Q ss_pred HHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHH
Q 048364 339 ERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLM 381 (400)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 381 (400)
+.++++..... | .++..|..|..+|...|+..++.....+.
T Consensus 394 i~~L~~~~~~~-p-~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 394 IRILNRYLFND-P-EDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHHhhcC-C-CCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 88888888888 7 88888888888888877766665544443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.43 E-value=5e-06 Score=62.13 Aligned_cols=95 Identities=13% Similarity=0.067 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHH
Q 048364 253 TFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACK 330 (400)
Q Consensus 253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~ 330 (400)
....+...+...|++++|...++.+... .+.+...+..+..++...|++++|...++.. ...| +...+..+...+.
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 3444555555666666666666665531 2334455555666666666666666666655 3333 3445555555666
Q ss_pred hcCCHHHHHHHHHHHHHcC
Q 048364 331 EHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 331 ~~~~~~~a~~~~~~~~~~~ 349 (400)
..|++++|...+++..+..
T Consensus 97 ~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 97 ALGEPESALKALDLAIEIC 115 (135)
T ss_pred HcCCHHHHHHHHHHHHHhc
Confidence 6666666666666666655
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.4e-05 Score=61.59 Aligned_cols=127 Identities=19% Similarity=0.142 Sum_probs=109.7
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc--cCCccHHHHHHHHHHHHhc
Q 048364 255 TGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM--RLEPNVIIWGSFLAACKEH 332 (400)
Q Consensus 255 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~p~~~~~~~l~~~~~~~ 332 (400)
..+-..+...|+-+....+...... ..+.+.......+....+.|++..|...+++. .-+||...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHc
Confidence 5566677778888888888877653 33446667777999999999999999999999 4466888999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhccc
Q 048364 333 KQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQN 385 (400)
Q Consensus 333 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 385 (400)
|++++|..-+.+..+.. | .++..++.+...|.-.|+.+.|..++......+
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 148 GRFDEARRAYRQALELA-P-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred cChhHHHHHHHHHHHhc-c-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 99999999999999999 8 899999999999999999999999998876543
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00014 Score=68.96 Aligned_cols=161 Identities=9% Similarity=0.063 Sum_probs=120.5
Q ss_pred cccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHH
Q 048364 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEE--R-NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTG 256 (400)
Q Consensus 180 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 256 (400)
.+..++..+..|..+....|.+++|..+++.+.+ | +......++..+.+.+++++|+..+++...... -+......
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-~~~~~~~~ 159 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS-SSAREILL 159 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC-CCHHHHHH
Confidence 3455678888888999999999999999998886 4 345677788889999999999999999888632 24566677
Q ss_pred HHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc--cCCccHHHHHHHHHHHHhcCC
Q 048364 257 VLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM--RLEPNVIIWGSFLAACKEHKQ 334 (400)
Q Consensus 257 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~p~~~~~~~l~~~~~~~~~ 334 (400)
+..++.+.|++++|..+|+++.. ..+.+..++..+..++...|+.++|...|++. ...|-...|+..+. +
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~------~ 231 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV------D 231 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH------H
Confidence 77788889999999999999985 33345778888899999999999999999988 33455555555442 3
Q ss_pred HHHHHHHHHHHHHcC
Q 048364 335 FDMAERVIKQALRMV 349 (400)
Q Consensus 335 ~~~a~~~~~~~~~~~ 349 (400)
...-..++++..-.+
T Consensus 232 ~~~~~~~~~~~~~~~ 246 (694)
T PRK15179 232 LNADLAALRRLGVEG 246 (694)
T ss_pred HHHHHHHHHHcCccc
Confidence 344445555554443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.39 E-value=6.1e-05 Score=64.54 Aligned_cols=193 Identities=12% Similarity=0.041 Sum_probs=139.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccCCCc---ccHHHHHHHHHhCC-ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048364 187 IATILVDMYAKCGFLKYALMVFELMEERNV---ISWTALICGSAHRG-YSEDALSLFEMMQATGVKPNEMTFTGVLTACV 262 (400)
Q Consensus 187 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 262 (400)
++..+-..+...++.++|..+..++.+.++ .+|+.-..++...| ++++++..++++.....+ +..+|+.-...+.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~ 117 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHH
Confidence 334445556677889999999999887444 34555555666667 679999999999887433 4455665555555
Q ss_pred hcCCh--hhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhc---CCH
Q 048364 263 HTGLV--DEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEH---KQF 335 (400)
Q Consensus 263 ~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~---~~~ 335 (400)
+.|+. +++..+++.+.+ .-+-+..+|+...-++...|+++++++.++++ ...| |...|+....++.+. |+.
T Consensus 118 ~l~~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 118 KLGPDAANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HcCchhhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccc
Confidence 66653 677888888884 23447788998888999999999999999998 4344 556676666555544 222
Q ss_pred ----HHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcc----cchHHHHHHHHHHhcc
Q 048364 336 ----DMAERVIKQALRMVKPENDGGVFTLICDLYTMN----EKWEGAERVRKLMLNQ 384 (400)
Q Consensus 336 ----~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~m~~~ 384 (400)
++...+..+++... | .+..+|..+...+... ++..+|.+.+.+..+.
T Consensus 196 ~~~~e~el~y~~~aI~~~-P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~ 250 (320)
T PLN02789 196 EAMRDSELKYTIDAILAN-P-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK 250 (320)
T ss_pred cccHHHHHHHHHHHHHhC-C-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc
Confidence 56788888999999 8 8999999999998873 4456688887776653
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.1e-05 Score=68.72 Aligned_cols=128 Identities=10% Similarity=0.021 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048364 185 EQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHT 264 (400)
Q Consensus 185 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 264 (400)
......|+..+...++++.|..+|+++.+.++.....++..+...++-.+|++++++..... +-+......-...|.+.
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 34556677778888999999999999999888888888899988999999999999998752 23556666666778899
Q ss_pred CChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhccC
Q 048364 265 GLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRL 315 (400)
Q Consensus 265 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 315 (400)
++++.|.++.+++.+ -.+.+..+|..|..+|.+.|+++.|+-.++.++.
T Consensus 248 ~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 248 KKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred CCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 999999999999984 2333567999999999999999999999998843
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.2e-05 Score=59.31 Aligned_cols=124 Identities=14% Similarity=0.130 Sum_probs=72.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhhhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCccH----HHHHHHHH
Q 048364 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP-RIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNV----IIWGSFLA 327 (400)
Q Consensus 254 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~----~~~~~l~~ 327 (400)
|..++..+ ..++...+...++.+.++++-.+ .....-.+...+...|++++|...|+.. ...|+. .....+..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 33444443 36666667666777765322111 1222333455666777777777777776 222332 23344566
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHH
Q 048364 328 ACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLM 381 (400)
Q Consensus 328 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 381 (400)
.+...|++++|...++..... + ..+..+...+.+|.+.|++++|...|+..
T Consensus 94 ~~~~~~~~d~Al~~L~~~~~~--~-~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIPDE--A-FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHcCCHHHHHHHHHhccCc--c-hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 677777777777777653222 2 45566677777777777777777777653
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00025 Score=61.87 Aligned_cols=115 Identities=16% Similarity=0.103 Sum_probs=58.5
Q ss_pred HhCCChhhHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCC-hhhHHHHHHHHHhcCChH
Q 048364 227 AHRGYSEDALSLFEMMQATGVKPN-EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR-IQHYGCMVDLFGKAGFLE 304 (400)
Q Consensus 227 ~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 304 (400)
...|++++|+..++.+... .|+ ..........+.+.++..+|.+.++.+.. ..|+ ....-.+..+|.+.|++.
T Consensus 317 ~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHHhcCChH
Confidence 3445555666666555544 233 23333344445555666666666655552 2333 333444555555666666
Q ss_pred HHHHHHHhc--cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048364 305 EAYEVIRTM--RLEPNVIIWGSFLAACKEHKQFDMAERVIKQAL 346 (400)
Q Consensus 305 ~a~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 346 (400)
+|..+++.. ..+-|...|..|.++|...|+..++..-.-+..
T Consensus 392 eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 392 EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 665555555 223345555555566555555555544444333
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.2e-06 Score=47.90 Aligned_cols=34 Identities=35% Similarity=0.684 Sum_probs=28.5
Q ss_pred ccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC
Q 048364 217 ISWTALICGSAHRGYSEDALSLFEMMQATGVKPN 250 (400)
Q Consensus 217 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 250 (400)
.+||.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3688888888888888888888888888888886
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.1e-05 Score=57.17 Aligned_cols=95 Identities=17% Similarity=0.236 Sum_probs=64.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHh
Q 048364 288 QHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLY 365 (400)
Q Consensus 288 ~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 365 (400)
.....+...+...|++++|.+.++.. ...| +...+..+...+...|++++|...+++..+.+ | .++.++..+..+|
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p-~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-P-DDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C-CChHHHHHHHHHH
Confidence 44555666667777777777777766 3333 45566666677777777777777777777766 6 6667777777777
Q ss_pred hcccchHHHHHHHHHHhcc
Q 048364 366 TMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 366 ~~~g~~~~a~~~~~~m~~~ 384 (400)
...|++++|...+++..+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI 114 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 7777777777777666653
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.0022 Score=56.92 Aligned_cols=125 Identities=12% Similarity=0.198 Sum_probs=82.8
Q ss_pred CCCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCC--CChhhHHHHHH
Q 048364 13 PSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPE--RNAVTWNTMIK 89 (400)
Q Consensus 13 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~--~~~~~~~~l~~ 89 (400)
+-|..+|+.||+-+... ..+++++.++++...- +.....|..-+..- ...+++...++|.+-.. -+...|...+.
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F-P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~ 94 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF-PSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLS 94 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 66889999999998776 9999999999987642 23566788888888 99999999999987664 36677777766
Q ss_pred HHHc-CCChHH----HHHHHhh------CCCCChhhHHHHHH---------HHHhcCCcchHHHHHHHHH
Q 048364 90 GYSK-SGNVCE----ARDFFER------MPLRNVASWSAMIA---------AYLNAGAYDPGLKLFREMI 139 (400)
Q Consensus 90 ~~~~-~~~~~~----a~~~~~~------~~~~~~~~~~~l~~---------~~~~~g~~~~a~~~~~~m~ 139 (400)
.--+ .++... ..+.|+- |...+-..|+..+. -|....+++...++|+++.
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral 164 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRAL 164 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHh
Confidence 4433 222222 1122221 11223334444332 3445557777888888886
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00013 Score=57.93 Aligned_cols=184 Identities=11% Similarity=0.102 Sum_probs=141.1
Q ss_pred hcCCHHHHHHHHHhccC--------CCc-ccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCC
Q 048364 197 KCGFLKYALMVFELMEE--------RNV-ISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVL-TACVHTGL 266 (400)
Q Consensus 197 ~~g~~~~A~~~~~~~~~--------~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~-~~~~~~~~ 266 (400)
...+.++..+++..+.. ++. ..|..++-+....|+.+.|...++.+.+.- |.+.-...+= .-+-..|+
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhc
Confidence 45678888888887764 122 235555666778899999999999998872 5543332222 22455799
Q ss_pred hhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc--cCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048364 267 VDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM--RLEPNVIIWGSFLAACKEHKQFDMAERVIKQ 344 (400)
Q Consensus 267 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 344 (400)
+++|+++++.+.++ -+.|..++-.-+-..-..|+.-+|++.+.+. .+..|...|.-+...|...|++++|.-.+++
T Consensus 102 ~~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 102 YKEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hhhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 99999999999963 3556777777777777888888888888777 5667899999999999999999999999999
Q ss_pred HHHcCCCCCCchHHHHHHHHhhccc---chHHHHHHHHHHhcccc
Q 048364 345 ALRMVKPENDGGVFTLICDLYTMNE---KWEGAERVRKLMLNQNV 386 (400)
Q Consensus 345 ~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~~~ 386 (400)
++-.. | .++..+..+...+.-.| +.+-|.+++.+..+...
T Consensus 180 ~ll~~-P-~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 180 LLLIQ-P-FNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHHcC-C-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 99998 8 88999999988876554 56678888888877544
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00024 Score=56.61 Aligned_cols=171 Identities=12% Similarity=0.111 Sum_probs=125.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHH---HHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048364 187 IATILVDMYAKCGFLKYALMVFELMEERNVISWTAL---ICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVH 263 (400)
Q Consensus 187 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 263 (400)
+|..++-+....|+.+.|..+++.+...-+.++... .--+-..|++++|+++|+.+.+.+ +.|..++.--+...-.
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence 445556666778889999999988776333332221 123456799999999999998875 4466777766666777
Q ss_pred cCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcC---CHHHH
Q 048364 264 TGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHK---QFDMA 338 (400)
Q Consensus 264 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~---~~~~a 338 (400)
.|+.-+|++-+....+ .+..|...|..+...|...|++++|.-.++++ -+.| +...+..+...+.-.| +.+.+
T Consensus 133 ~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred cCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 7888889888888875 56789999999999999999999999999999 4455 4555666666655444 67788
Q ss_pred HHHHHHHHHcCCCCCCchHHHHHH
Q 048364 339 ERVIKQALRMVKPENDGGVFTLIC 362 (400)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~l~ 362 (400)
.+++.+.++.. | .+...+..+.
T Consensus 211 rkyy~~alkl~-~-~~~ral~GI~ 232 (289)
T KOG3060|consen 211 RKYYERALKLN-P-KNLRALFGIY 232 (289)
T ss_pred HHHHHHHHHhC-h-HhHHHHHHHH
Confidence 99999999988 6 4444444433
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.9e-06 Score=46.66 Aligned_cols=33 Identities=39% Similarity=0.661 Sum_probs=24.9
Q ss_pred ccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCC
Q 048364 217 ISWTALICGSAHRGYSEDALSLFEMMQATGVKP 249 (400)
Q Consensus 217 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 249 (400)
.+|+.++.+|++.|+++.|..+|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777766
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.5e-05 Score=59.11 Aligned_cols=97 Identities=9% Similarity=0.035 Sum_probs=75.7
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHH
Q 048364 287 IQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDL 364 (400)
Q Consensus 287 ~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 364 (400)
....-.+...+...|++++|.++|+-+ .+.| +..-|-.|.-++-..|++++|+..+..+.... | .++..+..+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~-ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-I-DAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-C-CCchHHHHHHHH
Confidence 334445566677888888888888887 5556 44566777778888888888888888888888 7 888888888888
Q ss_pred hhcccchHHHHHHHHHHhccc
Q 048364 365 YTMNEKWEGAERVRKLMLNQN 385 (400)
Q Consensus 365 ~~~~g~~~~a~~~~~~m~~~~ 385 (400)
+...|+.+.|.+.|+..+...
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHHh
Confidence 888888888888888777543
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00059 Score=64.65 Aligned_cols=176 Identities=10% Similarity=-0.013 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhccCC---CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC-HH--HHHHHHH
Q 048364 186 QIATILVDMYAKCGFLKYALMVFELMEER---NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPN-EM--TFTGVLT 259 (400)
Q Consensus 186 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~--~~~~l~~ 259 (400)
..|..|...|+..-+...|.+.|++..+- +...+-.....|++..+++.|..+.-..-+ ..|- .. -|....-
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~q--ka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQ--KAPAFACKENWVQRGP 570 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhh--hchHHHHHhhhhhccc
Confidence 34555555565555555666666655542 334455555666666666666655211111 1110 11 1111222
Q ss_pred HHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCccHHHHHH-HHHHHHhcCCHHH
Q 048364 260 ACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNVIIWGS-FLAACKEHKQFDM 337 (400)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~~~~~~-l~~~~~~~~~~~~ 337 (400)
.|.+.++..+|..-|+...+ --+.|...|..++++|.++|++..|.++|.+. .++|+...-.- .....+..|++.+
T Consensus 571 yyLea~n~h~aV~~fQsALR--~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALR--TDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred cccCccchhhHHHHHHHHhc--CCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHH
Confidence 34455555666655555552 22224555666666666666666666666655 44443321111 1112344556666
Q ss_pred HHHHHHHHHHcCCCCCCchHHHHHHHHhhc
Q 048364 338 AERVIKQALRMVKPENDGGVFTLICDLYTM 367 (400)
Q Consensus 338 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 367 (400)
|...+..++... . ........++..+.+
T Consensus 649 ald~l~~ii~~~-s-~e~~~q~gLaE~~ir 676 (1238)
T KOG1127|consen 649 ALDALGLIIYAF-S-LERTGQNGLAESVIR 676 (1238)
T ss_pred HHHHHHHHHHHH-H-HHHHhhhhHHHHHHH
Confidence 666666555544 2 233333444444443
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.22 E-value=4.9e-05 Score=55.22 Aligned_cols=97 Identities=10% Similarity=0.101 Sum_probs=54.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhhhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCcc----HHHHHHHHH
Q 048364 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP-RIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPN----VIIWGSFLA 327 (400)
Q Consensus 254 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~----~~~~~~l~~ 327 (400)
+..+...+.+.|++++|.+.++.+.....-.+ ....+..+..++.+.|+++.|.+.|+.+ ...|+ ...+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 44455555666666666666666654311111 1234445666666666666666666665 22232 334555556
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCC
Q 048364 328 ACKEHKQFDMAERVIKQALRMVKP 351 (400)
Q Consensus 328 ~~~~~~~~~~a~~~~~~~~~~~~~ 351 (400)
++.+.|++++|...++++++.. |
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~-p 107 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRY-P 107 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHC-c
Confidence 6666666666666666666666 5
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00014 Score=54.99 Aligned_cols=116 Identities=12% Similarity=0.083 Sum_probs=64.3
Q ss_pred CCChhhHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCC--hhhHHHHHHHHHhcCChH
Q 048364 229 RGYSEDALSLFEMMQATGVKP--NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR--IQHYGCMVDLFGKAGFLE 304 (400)
Q Consensus 229 ~~~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~ 304 (400)
.++...+...++.+......- .......+...+...|++++|...|+.+... ...|+ ......+...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 566666666666666542111 1122333445566667777777777776643 21221 123334556666677777
Q ss_pred HHHHHHHhc-cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048364 305 EAYEVIRTM-RLEPNVIIWGSFLAACKEHKQFDMAERVIKQA 345 (400)
Q Consensus 305 ~a~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 345 (400)
+|+..++.. +-......+......|...|++++|...|++.
T Consensus 103 ~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 103 EALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 777777665 21223344555666677777777777776654
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.1e-06 Score=46.85 Aligned_cols=35 Identities=31% Similarity=0.710 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCH
Q 048364 113 ASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQ 148 (400)
Q Consensus 113 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~ 148 (400)
.+||+++.+|++.|++++|.++|++|. ..|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~-~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEML-ERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHH-HcCCCCCC
Confidence 378999999999999999999999998 78998873
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.7e-06 Score=46.04 Aligned_cols=34 Identities=12% Similarity=0.253 Sum_probs=32.0
Q ss_pred chhHHHHHHHhcccchhHHHHHHHHHHHHhCccc
Q 048364 16 SFSILHILKSCTHFNNLTVIHHLHSHILKLGFIS 49 (400)
Q Consensus 16 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 49 (400)
..+|+.++.+|++.|+++.|.++|++|.+.|+.|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999887
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.8e-05 Score=53.64 Aligned_cols=92 Identities=21% Similarity=0.228 Sum_probs=64.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhc-cCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhc
Q 048364 290 YGCMVDLFGKAGFLEEAYEVIRTM-RLEPN-VIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTM 367 (400)
Q Consensus 290 ~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 367 (400)
+..+...+...|++++|...+++. ...|+ ...+..+...+...|++++|...+++..... | .+..++..++.++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-P-DNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-C-cchhHHHHHHHHHHH
Confidence 445666677777777777777776 33343 3556666777777777888888888777776 6 555677777777777
Q ss_pred ccchHHHHHHHHHHhc
Q 048364 368 NEKWEGAERVRKLMLN 383 (400)
Q Consensus 368 ~g~~~~a~~~~~~m~~ 383 (400)
.|++++|...++...+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 7888888777776654
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.19 E-value=3e-06 Score=57.23 Aligned_cols=76 Identities=17% Similarity=0.292 Sum_probs=34.3
Q ss_pred CChHHHHHHHHhc-cCCc---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHH
Q 048364 301 GFLEEAYEVIRTM-RLEP---NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAER 376 (400)
Q Consensus 301 g~~~~a~~~~~~~-~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 376 (400)
|+++.|+.+++++ ...| +...+-.+..+|.+.|++++|..++++ .+.+ + .+......++.++.+.|++++|++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-P-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-H-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-C-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4455555555554 1122 223333345555555555555555555 3333 2 233444444555555555555555
Q ss_pred HHH
Q 048364 377 VRK 379 (400)
Q Consensus 377 ~~~ 379 (400)
.++
T Consensus 80 ~l~ 82 (84)
T PF12895_consen 80 ALE 82 (84)
T ss_dssp HHH
T ss_pred HHh
Confidence 554
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.003 Score=54.11 Aligned_cols=102 Identities=18% Similarity=0.077 Sum_probs=48.9
Q ss_pred HHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcC
Q 048364 222 LICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301 (400)
Q Consensus 222 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 301 (400)
-+.-+...|+...|.++-.+. + .|+..-|...+.+++..++|++..++-.. +-++.-|..++.+|.+.|
T Consensus 183 Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s-------kKsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS-------KKSPIGYEPFVEACLKYG 251 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChHHHHHHHHHCC
Confidence 344444555555555443332 1 24555555555566655655554443221 112344555555555566
Q ss_pred ChHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 048364 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERV 341 (400)
Q Consensus 302 ~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 341 (400)
+..+|..++.++. + ..-+..|.+.|++.+|.+.
T Consensus 252 ~~~eA~~yI~k~~--~-----~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 252 NKKEASKYIPKIP--D-----EERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CHHHHHHHHHhCC--h-----HHHHHHHHHCCCHHHHHHH
Confidence 6555555555531 1 2223444555555555433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0083 Score=56.59 Aligned_cols=65 Identities=12% Similarity=0.172 Sum_probs=51.5
Q ss_pred HHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhcccccc
Q 048364 322 WGSFLAACKEHKQ---FDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRK 388 (400)
Q Consensus 322 ~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 388 (400)
.+.|+..+.+.++ +-+|+.+++...... | .+..+-..++++|+-.|-+..|.+.++.+--..|+.
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~-hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~ 506 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKS-P-HNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQT 506 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-C-ccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhh
Confidence 4667777877776 457788888888888 7 788888899999999999999999998876555543
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.3e-05 Score=54.05 Aligned_cols=80 Identities=19% Similarity=0.272 Sum_probs=36.2
Q ss_pred CChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhccCCc-cHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048364 265 GLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEP-NVIIWGSFLAACKEHKQFDMAERVIK 343 (400)
Q Consensus 265 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~ 343 (400)
|+++.|+.+++++.+.....++...+..+..+|.+.|++++|..++++....| +....-.+..+|.+.|++++|+..++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 45555555555555332111122333335555555555555555555432222 11222233455555555555555554
Q ss_pred H
Q 048364 344 Q 344 (400)
Q Consensus 344 ~ 344 (400)
+
T Consensus 83 ~ 83 (84)
T PF12895_consen 83 K 83 (84)
T ss_dssp H
T ss_pred c
Confidence 4
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.09 E-value=6.8e-05 Score=54.45 Aligned_cols=97 Identities=12% Similarity=0.060 Sum_probs=81.1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhc-cCCcc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--CchHHHH
Q 048364 288 QHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPN----VIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEN--DGGVFTL 360 (400)
Q Consensus 288 ~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~ 360 (400)
.++..++..+.+.|++++|.+.|..+ ...|+ ...+..+..++.+.|++++|...++++.... |.. .+.++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~ 81 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-PKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-CCCCcccHHHHH
Confidence 45667888899999999999999998 33443 3466778899999999999999999999887 522 3567889
Q ss_pred HHHHhhcccchHHHHHHHHHHhccc
Q 048364 361 ICDLYTMNEKWEGAERVRKLMLNQN 385 (400)
Q Consensus 361 l~~~~~~~g~~~~a~~~~~~m~~~~ 385 (400)
++.++...|++++|...++++.+..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHC
Confidence 9999999999999999999998764
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00072 Score=57.46 Aligned_cols=89 Identities=16% Similarity=0.145 Sum_probs=37.7
Q ss_pred HHHHHHHhc-CCHHHHHHHHHhccC----CC-----cccHHHHHHHHHhCCChhhHHHHHHHHHHCCCC-----CCHH-H
Q 048364 190 ILVDMYAKC-GFLKYALMVFELMEE----RN-----VISWTALICGSAHRGYSEDALSLFEMMQATGVK-----PNEM-T 253 (400)
Q Consensus 190 ~l~~~~~~~-g~~~~A~~~~~~~~~----~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-----p~~~-~ 253 (400)
.+...|... |+++.|.+.|++..+ .+ ...+..+...+.+.|++++|.++|++....-.. ++.. .
T Consensus 119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~ 198 (282)
T PF14938_consen 119 ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY 198 (282)
T ss_dssp HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 344444444 555555555554432 01 122334445555556666666666555443211 1111 1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhh
Q 048364 254 FTGVLTACVHTGLVDEGRKYFKMID 278 (400)
Q Consensus 254 ~~~l~~~~~~~~~~~~a~~~~~~~~ 278 (400)
|...+-++...|+...|...++...
T Consensus 199 ~l~a~l~~L~~~D~v~A~~~~~~~~ 223 (282)
T PF14938_consen 199 FLKAILCHLAMGDYVAARKALERYC 223 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHG
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2222223444555555555555544
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0017 Score=55.20 Aligned_cols=115 Identities=11% Similarity=0.104 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhC-CChhhHHHHHHHHHHC----CCCCC--HHHHHHHHH
Q 048364 187 IATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHR-GYSEDALSLFEMMQAT----GVKPN--EMTFTGVLT 259 (400)
Q Consensus 187 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~----~~~p~--~~~~~~l~~ 259 (400)
.+...+..|...|++..|-+.+.. +...|... |++++|++.|++..+. | .+. ...+..+..
T Consensus 96 ~~~~A~~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 96 CYEKAIEIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAAD 163 (282)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHH
Confidence 344445556666666665555433 34555565 6777777777665442 2 111 234455556
Q ss_pred HHHhcCChhhHHHHHHHhhhhcCC----CCCh-hhHHHHHHHHHhcCChHHHHHHHHhc
Q 048364 260 ACVHTGLVDEGRKYFKMIDEEYDL----EPRI-QHYGCMVDLFGKAGFLEEAYEVIRTM 313 (400)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~~~~~~----~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~ 313 (400)
.+.+.|++++|.++|+++....-- +.+. ..+...+-++...||+..|.+.+++.
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666677777777777666532110 1111 12223344555566666666666665
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.1e-05 Score=42.48 Aligned_cols=30 Identities=33% Similarity=0.658 Sum_probs=22.3
Q ss_pred cHHHHHHHHHhCCChhhHHHHHHHHHHCCC
Q 048364 218 SWTALICGSAHRGYSEDALSLFEMMQATGV 247 (400)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 247 (400)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 677777777777777777777777777653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.011 Score=51.63 Aligned_cols=112 Identities=11% Similarity=0.062 Sum_probs=73.1
Q ss_pred hhhHHHHHHHhhhhcCCCCChhhHHHHHH----HHHhc---CChH---HHHHHHHhccCCc----cHHHHHHHHHH--HH
Q 048364 267 VDEGRKYFKMIDEEYDLEPRIQHYGCMVD----LFGKA---GFLE---EAYEVIRTMRLEP----NVIIWGSFLAA--CK 330 (400)
Q Consensus 267 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~---g~~~---~a~~~~~~~~~~p----~~~~~~~l~~~--~~ 330 (400)
-++|..+++.+.+- .+-|..+-|.+.. .|... ..+. +-..+.++.|+.| +...-|.+..+ +.
T Consensus 396 dekalnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLy 473 (549)
T PF07079_consen 396 DEKALNLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLY 473 (549)
T ss_pred cHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHH
Confidence 67778888777731 1223333332221 22221 1122 2233444447666 34455666554 56
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 331 EHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 331 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
.+|++.++.-.-....+.. |++.+|..++.+.....++++|+.++..++-
T Consensus 474 sqgey~kc~~ys~WL~~ia---PS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 474 SQGEYHKCYLYSSWLTKIA---PSPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred hcccHHHHHHHHHHHHHhC---CcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 7899999988888887776 5999999999999999999999999988764
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.95 E-value=4.1e-05 Score=49.40 Aligned_cols=64 Identities=16% Similarity=0.194 Sum_probs=52.9
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhccc-chHHHHHHHHHHhc
Q 048364 318 NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNE-KWEGAERVRKLMLN 383 (400)
Q Consensus 318 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 383 (400)
+..+|..+...+...|++++|+..|++.++.. | .++.++..++.+|...| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p-~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-P-NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-T-THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-C-CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 35677778888888888888888888888888 7 78888888888888888 78888888887664
|
... |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00019 Score=49.40 Aligned_cols=91 Identities=21% Similarity=0.197 Sum_probs=47.6
Q ss_pred HHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCC
Q 048364 257 VLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQ 334 (400)
Q Consensus 257 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~ 334 (400)
+...+...|++++|...++.+.+. .+.+...+..+..++...|++++|.+.++.. ...| +..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence 444445555555555555555431 1222244455555555556666666666554 2222 22355555556666666
Q ss_pred HHHHHHHHHHHHHcC
Q 048364 335 FDMAERVIKQALRMV 349 (400)
Q Consensus 335 ~~~a~~~~~~~~~~~ 349 (400)
+++|...+++..+..
T Consensus 84 ~~~a~~~~~~~~~~~ 98 (100)
T cd00189 84 YEEALEAYEKALELD 98 (100)
T ss_pred HHHHHHHHHHHHccC
Confidence 666666666655544
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=7.7e-05 Score=65.41 Aligned_cols=104 Identities=13% Similarity=0.110 Sum_probs=86.0
Q ss_pred HHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCC
Q 048364 257 VLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQ 334 (400)
Q Consensus 257 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~ 334 (400)
-...+...|++++|...|+++.+. .+.+...|..+..+|...|++++|+..+++. .+.| +...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 345567889999999999999953 3446778888999999999999999999998 6666 56678888999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCchHHHHHHHH
Q 048364 335 FDMAERVIKQALRMVKPENDGGVFTLICDL 364 (400)
Q Consensus 335 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 364 (400)
+++|...|+++++.. | .+..+...+..+
T Consensus 86 ~~eA~~~~~~al~l~-P-~~~~~~~~l~~~ 113 (356)
T PLN03088 86 YQTAKAALEKGASLA-P-GDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHHhC-C-CCHHHHHHHHHH
Confidence 999999999999999 8 666665555444
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00034 Score=61.66 Aligned_cols=122 Identities=8% Similarity=0.024 Sum_probs=88.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcC-CCCChhhHHHHHHHHHhcCChHHHHHHHHhc---cCCccHHH
Q 048364 246 GVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYD-LEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM---RLEPNVII 321 (400)
Q Consensus 246 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~p~~~~ 321 (400)
+.+.+...+..++..+....+.+.+..++.+.+.... ...-..+..++++.|...|..++++.+++.= |+=||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 3455667777778877777778888887777764311 1122345567888888888888888888764 88888888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcc
Q 048364 322 WGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368 (400)
Q Consensus 322 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 368 (400)
+|.|+..+.+.|++..|.++...|...+.. .++.++...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~-~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEF-DNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhcc-CCchHHHHHHHHHHHh
Confidence 888888888888888888888888877744 6667776666665544
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0057 Score=50.46 Aligned_cols=177 Identities=11% Similarity=0.060 Sum_probs=105.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccC--CCcc-c---HHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048364 188 ATILVDMYAKCGFLKYALMVFELMEE--RNVI-S---WTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTAC 261 (400)
Q Consensus 188 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~-~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 261 (400)
.-.....+...|++++|.+.|+.+.. |+.. . .-.++.++.+.+++++|...+++..+....-....+...+.+.
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGL 114 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHH
Confidence 33345556678888888888888876 3221 1 2345567788888888888888887763322223333344433
Q ss_pred Hh--cC---------------C---hhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhccCCccHHH
Q 048364 262 VH--TG---------------L---VDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVII 321 (400)
Q Consensus 262 ~~--~~---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~~~~ 321 (400)
+. .+ + ..+|...|+.+.+ -|=...-..+|...+..+...--..-
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~----------------~yP~S~ya~~A~~rl~~l~~~la~~e 178 (243)
T PRK10866 115 TNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR----------------GYPNSQYTTDATKRLVFLKDRLAKYE 178 (243)
T ss_pred hhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH----------------HCcCChhHHHHHHHHHHHHHHHHHHH
Confidence 31 11 1 1233344444443 22222333444443333311111111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCCchHHHHHHHHhhcccchHHHHHHHHHHh
Q 048364 322 WGSFLAACKEHKQFDMAERVIKQALRMVKP--ENDGGVFTLICDLYTMNEKWEGAERVRKLML 382 (400)
Q Consensus 322 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 382 (400)
+ .+.+-|.+.|++.-|..-++.+++.- | +....+...+..+|...|..++|..+...+.
T Consensus 179 ~-~ia~~Y~~~~~y~AA~~r~~~v~~~Y-p~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 179 L-SVAEYYTKRGAYVAVVNRVEQMLRDY-PDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred H-HHHHHHHHcCchHHHHHHHHHHHHHC-CCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1 35567889999999999999999876 4 1334567788889999999999988776553
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00024 Score=55.43 Aligned_cols=78 Identities=21% Similarity=0.140 Sum_probs=35.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhc-cCCcc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHH
Q 048364 290 YGCMVDLFGKAGFLEEAYEVIRTM-RLEPN----VIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDL 364 (400)
Q Consensus 290 ~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 364 (400)
+..+...+...|++++|...|++. ...|+ ...+..+..++.+.|++++|...++++++.. | .+...+..++.+
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p-~~~~~~~~lg~~ 115 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-P-KQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-c-ccHHHHHHHHHH
Confidence 333444444444444444444444 11111 2344444455555555555555555555544 4 344444444444
Q ss_pred hhccc
Q 048364 365 YTMNE 369 (400)
Q Consensus 365 ~~~~g 369 (400)
+...|
T Consensus 116 ~~~~g 120 (172)
T PRK02603 116 YHKRG 120 (172)
T ss_pred HHHcC
Confidence 44443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00037 Score=61.22 Aligned_cols=102 Identities=12% Similarity=-0.049 Sum_probs=83.1
Q ss_pred HHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcC
Q 048364 222 LICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301 (400)
Q Consensus 222 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 301 (400)
-...+...|++++|+..|++..+... -+...|..+..++...|++++|...++.+... -+.+...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence 34567788999999999999998743 35678888889999999999999999999842 2346678889999999999
Q ss_pred ChHHHHHHHHhc-cCCccHHHHHHHH
Q 048364 302 FLEEAYEVIRTM-RLEPNVIIWGSFL 326 (400)
Q Consensus 302 ~~~~a~~~~~~~-~~~p~~~~~~~l~ 326 (400)
++++|...|++. .+.|+.......+
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 999999999998 6677655544444
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.86 E-value=4.8e-05 Score=48.35 Aligned_cols=56 Identities=18% Similarity=0.243 Sum_probs=36.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 326 LAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 326 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
...+.+.|++++|...|+++++.. | .++..+..++.++...|++++|...++++.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-P-DNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-T-THHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445566666666666666666666 6 5666666666666666666666666666653
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00023 Score=49.16 Aligned_cols=78 Identities=14% Similarity=0.165 Sum_probs=58.9
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------ChhhHHHHHHHhhhhcCCCCChhhHH
Q 048364 221 ALICGSAHRGYSEDALSLFEMMQATGV-KPNEMTFTGVLTACVHTG--------LVDEGRKYFKMIDEEYDLEPRIQHYG 291 (400)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~ 291 (400)
..|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-....+|+.|. ..+++|+..+|+
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL-~~~lKP~~etYn 108 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDIL-SNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHH-HhccCCcHHHHH
Confidence 445556666889999999999999998 889999999998876542 3445667777777 447888888888
Q ss_pred HHHHHHHh
Q 048364 292 CMVDLFGK 299 (400)
Q Consensus 292 ~l~~~~~~ 299 (400)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 87776654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00027 Score=54.90 Aligned_cols=95 Identities=17% Similarity=-0.054 Sum_probs=70.6
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCcc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHH
Q 048364 286 RIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPN----VIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360 (400)
Q Consensus 286 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 360 (400)
....+..++..+...|++++|...|++. .+.|+ ..++..+...+...|++++|...++++.+.. | ....++..
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~-~~~~~~~~ 111 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-P-FLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-c-CcHHHHHH
Confidence 3455677777777888888888888877 33332 3467888888888999999999999988877 6 66677777
Q ss_pred HHHHhh-------cccchHHHHHHHHHHh
Q 048364 361 ICDLYT-------MNEKWEGAERVRKLML 382 (400)
Q Consensus 361 l~~~~~-------~~g~~~~a~~~~~~m~ 382 (400)
+...+. ..|+++.|...+++..
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 777777 7788887766665543
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00042 Score=56.99 Aligned_cols=110 Identities=16% Similarity=0.135 Sum_probs=80.9
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCCchHH
Q 048364 284 EPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKE---HKQFDMAERVIKQALRMVKPENDGGVF 358 (400)
Q Consensus 284 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~ 358 (400)
+-|...|-.|...|...|+.+.|..-|.+. .+.| +...+..+..++.. .....++..+|++++..+ | .+..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~-~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-P-ANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-C-ccHHHH
Confidence 447788888888888888888888888887 3333 44445555555433 334678888888888888 7 888888
Q ss_pred HHHHHHhhcccchHHHHHHHHHHhccccccccCcccc
Q 048364 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395 (400)
Q Consensus 359 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 395 (400)
..|...+...|++.+|...++.|.+..-..+|..+-|
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~i 267 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLI 267 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 8888888888888888888888887666555554443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=7.7e-05 Score=60.91 Aligned_cols=98 Identities=17% Similarity=0.217 Sum_probs=81.6
Q ss_pred HHHhcCChhhHHHHHHHhhhhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCcc-HHHHHHHHHHHHhcCCHH
Q 048364 260 ACVHTGLVDEGRKYFKMIDEEYDLEP-RIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPN-VIIWGSFLAACKEHKQFD 336 (400)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~ 336 (400)
-+.+.+++.+|...|...++ +.| |...|..-..+|.+.|.++.|++-.+.. .+.|. ..+|..|..+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH
Confidence 46788999999999999993 444 6777888899999999999999988877 77775 458999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCchHHHHHH
Q 048364 337 MAERVIKQALRMVKPENDGGVFTLIC 362 (400)
Q Consensus 337 ~a~~~~~~~~~~~~~~~~~~~~~~l~ 362 (400)
+|++.|++.++.. | .+......|-
T Consensus 167 ~A~~aykKaLeld-P-~Ne~~K~nL~ 190 (304)
T KOG0553|consen 167 EAIEAYKKALELD-P-DNESYKSNLK 190 (304)
T ss_pred HHHHHHHhhhccC-C-CcHHHHHHHH
Confidence 9999999999999 7 5554444443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00081 Score=52.46 Aligned_cols=114 Identities=18% Similarity=0.165 Sum_probs=64.2
Q ss_pred ccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHH
Q 048364 217 ISWTALICGSAHRGYSEDALSLFEMMQATGVKPN--EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMV 294 (400)
Q Consensus 217 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 294 (400)
..+..+...+...|++++|...|++.......+. ...+..+..++.+.|++++|...+++..+. .+.+...+..+.
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg 113 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHH
Confidence 3455566666667777777777776665432221 245556666666667777777766666632 122344455555
Q ss_pred HHHHhcCChHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048364 295 DLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKP 351 (400)
Q Consensus 295 ~~~~~~g~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 351 (400)
.+|...|+...+..-++.. ...+++|.+++++....+ |
T Consensus 114 ~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~-p 151 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLA-P 151 (172)
T ss_pred HHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhC-c
Confidence 5565555544443222211 012567778888877777 5
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00087 Score=57.28 Aligned_cols=157 Identities=15% Similarity=0.033 Sum_probs=106.5
Q ss_pred HHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCChhhHHHHHHHhhhhcCCCCChhhH-----------
Q 048364 224 CGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTA--CVHTGLVDEGRKYFKMIDEEYDLEPRIQHY----------- 290 (400)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----------- 290 (400)
.++.-.|++++|..+-....+.. ++ ..+...+++ +--.++.+.+...|++.. .+.|+...-
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld--~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD--AT-NAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc--cc-hhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHH
Confidence 44566788888877766665542 11 123333333 334567777877777776 334443221
Q ss_pred --HHHHHHHHhcCChHHHHHHHHhc-cCC-----ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHH
Q 048364 291 --GCMVDLFGKAGFLEEAYEVIRTM-RLE-----PNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLIC 362 (400)
Q Consensus 291 --~~l~~~~~~~g~~~~a~~~~~~~-~~~-----p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 362 (400)
..=..-..+.|++.+|.+.|.+. ++. |+...|.....+..+.|+..+|+.-.+++.+.+ + .-...+..-.
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~-syikall~ra 328 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-S-SYIKALLRRA 328 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-H-HHHHHHHHHH
Confidence 11122345778999999999887 444 456677777778889999999999999999888 6 5677777788
Q ss_pred HHhhcccchHHHHHHHHHHhcccccc
Q 048364 363 DLYTMNEKWEGAERVRKLMLNQNVRK 388 (400)
Q Consensus 363 ~~~~~~g~~~~a~~~~~~m~~~~~~~ 388 (400)
.++...++|++|.+-+++..+..-.+
T Consensus 329 ~c~l~le~~e~AV~d~~~a~q~~~s~ 354 (486)
T KOG0550|consen 329 NCHLALEKWEEAVEDYEKAMQLEKDC 354 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 88888899999999888876544333
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0021 Score=47.97 Aligned_cols=90 Identities=10% Similarity=-0.038 Sum_probs=49.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccC--C-CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048364 190 ILVDMYAKCGFLKYALMVFELMEE--R-NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGL 266 (400)
Q Consensus 190 ~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 266 (400)
.+...+...|++++|.++|+.+.. | +..-|-.|..++...|++++|+..|.......+ -|...+-.+..++...|+
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCC
Confidence 344445556666666666665543 2 233445555555566666666666666555432 244555555556666666
Q ss_pred hhhHHHHHHHhhhh
Q 048364 267 VDEGRKYFKMIDEE 280 (400)
Q Consensus 267 ~~~a~~~~~~~~~~ 280 (400)
.+.|.+.|+.....
T Consensus 119 ~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 119 VCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666655543
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.80 E-value=2.9e-05 Score=40.84 Aligned_cols=31 Identities=3% Similarity=0.145 Sum_probs=28.0
Q ss_pred hhHHHHHHHhcccchhHHHHHHHHHHHHhCc
Q 048364 17 FSILHILKSCTHFNNLTVIHHLHSHILKLGF 47 (400)
Q Consensus 17 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 47 (400)
.+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999998774
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.014 Score=55.16 Aligned_cols=55 Identities=15% Similarity=0.098 Sum_probs=32.0
Q ss_pred HHHhcCChHHHHHHHHh-c-cCCc--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048364 296 LFGKAGFLEEAYEVIRT-M-RLEP--NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKP 351 (400)
Q Consensus 296 ~~~~~g~~~~a~~~~~~-~-~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 351 (400)
.+-..|++++|.+++.. . ..-+ +...-+.-+..+...+++.+..++..++...+ +
T Consensus 199 iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~-~ 257 (932)
T KOG2053|consen 199 ILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG-N 257 (932)
T ss_pred HHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC-C
Confidence 34456677777777732 2 1111 22333444556666777777777777777777 5
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.026 Score=50.44 Aligned_cols=365 Identities=11% Similarity=0.113 Sum_probs=194.3
Q ss_pred CCCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH--HhCCHHHHHHH----HhhCC-----C-CC
Q 048364 13 PSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY--VVTSFGFARKL----FDELP-----E-RN 80 (400)
Q Consensus 13 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~g~~~~a~~~----~~~~~-----~-~~ 80 (400)
+-++..|..-++.-.+..+++....+|.+.+..-+ +...|...+.-. ..|+...++.. |+-.. + .+
T Consensus 50 P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s 127 (656)
T KOG1914|consen 50 PSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKS 127 (656)
T ss_pred CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCccc
Confidence 33567788889999999999999999999887654 466677777766 44544442222 22111 1 23
Q ss_pred hhhHHHHHHH---------HHcCCChHHHHHHHhhCCC-C---------ChhhHHHHHHH-------HHhcCCcchHHHH
Q 048364 81 AVTWNTMIKG---------YSKSGNVCEARDFFERMPL-R---------NVASWSAMIAA-------YLNAGAYDPGLKL 134 (400)
Q Consensus 81 ~~~~~~l~~~---------~~~~~~~~~a~~~~~~~~~-~---------~~~~~~~l~~~-------~~~~g~~~~a~~~ 134 (400)
-..|+..+.. +..+.+++...++|+++.. | |-.+|..=|+. --+...+..|.++
T Consensus 128 ~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~ 207 (656)
T KOG1914|consen 128 YSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRV 207 (656)
T ss_pred chhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 4456665543 4456678888889998762 2 21222221111 1123456677777
Q ss_pred HHHHHh-cCCCC------CCHHH---------HHHHHHHhhcccchh-------hhhhhhhhhH-HHhccccchHHHH--
Q 048364 135 FREMIS-NEGLT------PDQMT---------IGAVLSGCSHLGSVG-------LLMGKSAHGF-IVKNEWELNEQIA-- 188 (400)
Q Consensus 135 ~~~m~~-~~~~~------p~~~~---------~~~ll~~~~~~~~~~-------~~~a~~~~~~-~~~~~~~~~~~~~-- 188 (400)
+++... -.|+. |...| |-.+|.- -+.+... .-...-++++ +.-.+..|+....
T Consensus 208 ~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w-EksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s 286 (656)
T KOG1914|consen 208 YQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW-EKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYS 286 (656)
T ss_pred HHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH-HhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 776642 11221 11111 2222211 1111110 0001111111 1112222222111
Q ss_pred ---HHHHHHHHhcCC-------HHHHHHHHHhccC----CCcccHHHHHHHHH---hCCChhhHHHHHHHHHHC-CCCCC
Q 048364 189 ---TILVDMYAKCGF-------LKYALMVFELMEE----RNVISWTALICGSA---HRGYSEDALSLFEMMQAT-GVKPN 250 (400)
Q Consensus 189 ---~~l~~~~~~~g~-------~~~A~~~~~~~~~----~~~~~~~~l~~~~~---~~~~~~~a~~~~~~m~~~-~~~p~ 250 (400)
....+.+...|+ .+++..+++.... .+...|..+...-- ...+.+....++++++.. ...|+
T Consensus 287 ~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t 366 (656)
T KOG1914|consen 287 MYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT 366 (656)
T ss_pred HHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc
Confidence 011122333333 3444445544432 22233333322111 111355566666666543 23333
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCccHH-HHHHHHH
Q 048364 251 EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP-RIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNVI-IWGSFLA 327 (400)
Q Consensus 251 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~~-~~~~l~~ 327 (400)
.+|..++....+..-+..|..+|.++.+. +..+ ++.++++++..|| .++..-|.++|+-- ..-+|.. --...+.
T Consensus 367 -Lv~~~~mn~irR~eGlkaaR~iF~kaR~~-~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~yv~~Yld 443 (656)
T KOG1914|consen 367 -LVYCQYMNFIRRAEGLKAARKIFKKARED-KRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLD 443 (656)
T ss_pred -eehhHHHHHHHHhhhHHHHHHHHHHHhhc-cCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 45666777777777788888888888755 4334 6666777777665 45677788888754 2223333 3355666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCC-CCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 328 ACKEHKQFDMAERVIKQALRMVK-PENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 328 ~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
-+...++-..+..+|++.+.... +......|..++..-..-|+.+.+.++-+++..
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 67777888888888888887732 323456777777777777888877777666543
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0074 Score=46.00 Aligned_cols=128 Identities=9% Similarity=0.022 Sum_probs=82.1
Q ss_pred CCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc---cHHHH
Q 048364 247 VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP---NVIIW 322 (400)
Q Consensus 247 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p---~~~~~ 322 (400)
..|+...-..|..++.+.|+..+|...|++... .-+..|....-.+.++....+++..|...++++ ...| +..+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 356666666677777777888888888877773 234456666777777777777888887777776 2122 11223
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHH
Q 048364 323 GSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVR 378 (400)
Q Consensus 323 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 378 (400)
-.+.+.+...|++.+|+.-|+...+.- | ++..-......+.++|+..++..-+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~y-p--g~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYY-P--GPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhC-C--CHHHHHHHHHHHHHhcchhHHHHHH
Confidence 345677777788888888888877776 4 4444444445566666666554433
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00019 Score=45.56 Aligned_cols=58 Identities=19% Similarity=0.275 Sum_probs=43.7
Q ss_pred HHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048364 293 MVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKP 351 (400)
Q Consensus 293 l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 351 (400)
+...+...|++++|.+.|++. ...| +...+..+..++...|++++|...++++++.. |
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~-P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD-P 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-c
Confidence 456677888888888888887 4455 55677777888888888888888888888877 6
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0018 Score=59.52 Aligned_cols=135 Identities=14% Similarity=0.048 Sum_probs=89.4
Q ss_pred CCcccHHHHHHHHHhC-----CChhhHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcC--------ChhhHHHHHHHhhh
Q 048364 214 RNVISWTALICGSAHR-----GYSEDALSLFEMMQATGVKPNE-MTFTGVLTACVHTG--------LVDEGRKYFKMIDE 279 (400)
Q Consensus 214 ~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~ 279 (400)
.+...|...+.+.... ++.+.|..+|++..+. .|+- ..+..+..++.... ++..+.+..+....
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 4667788887765432 2366888999988886 4553 44444433332221 12233333333221
Q ss_pred hcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048364 280 EYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKP 351 (400)
Q Consensus 280 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 351 (400)
......+...|..+.......|++++|...+++. ...|+...|..+...+...|+.++|...++++...+ |
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~-P 484 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR-P 484 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-C
Confidence 1112334566777766667788999999999888 677888888888888999999999999999998888 6
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.73 E-value=6.9e-05 Score=48.15 Aligned_cols=51 Identities=20% Similarity=0.383 Sum_probs=30.8
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 331 EHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 331 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
..|++++|+.+|+++.... | .+..+...++.+|.+.|++++|.++++++..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-P-DNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-T-TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4556666666666666666 5 5566666666666666666666666665554
|
... |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00061 Score=57.67 Aligned_cols=143 Identities=15% Similarity=0.189 Sum_probs=103.8
Q ss_pred ccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHH
Q 048364 217 ISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTA-CVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295 (400)
Q Consensus 217 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 295 (400)
.+|-.++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|.++|+...+. +..+...|...+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 357788888888888999999999998543 2234444444444 33356777799999999974 4567778888999
Q ss_pred HHHhcCChHHHHHHHHhc--cCCccH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHh
Q 048364 296 LFGKAGFLEEAYEVIRTM--RLEPNV---IIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLY 365 (400)
Q Consensus 296 ~~~~~g~~~~a~~~~~~~--~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 365 (400)
.+.+.|+.+.|..+|++. .+.++. ..|...+..=.+.|+.+.+..+.+++.+.. | +......++.-|
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~-~--~~~~~~~f~~ry 150 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF-P--EDNSLELFSDRY 150 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT-T--TS-HHHHHHCCT
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-h--hhhHHHHHHHHh
Confidence 999999999999999998 333333 489999999999999999999999999987 6 344444444444
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00049 Score=56.36 Aligned_cols=150 Identities=14% Similarity=0.103 Sum_probs=104.4
Q ss_pred HHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCC-ChhhHHHHHHHHHhcCC
Q 048364 224 CGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP-RIQHYGCMVDLFGKAGF 302 (400)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 302 (400)
.-+.+.+++++|+..|.+.++.. +-|.+.|..-..+|++.|.++.|++=.+... .+.| -..+|..|..+|...|+
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccCc
Confidence 44678899999999999999873 3367778888999999999999998888777 3345 35789999999999999
Q ss_pred hHHHHHHHHhc-cCCccHHHHHHHHHHHH-hcCCHH---HHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHH
Q 048364 303 LEEAYEVIRTM-RLEPNVIIWGSFLAACK-EHKQFD---MAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERV 377 (400)
Q Consensus 303 ~~~a~~~~~~~-~~~p~~~~~~~l~~~~~-~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 377 (400)
+++|.+.|++. .+.|+-.+|-.=+...- +.+... .+...++-.-..+.++.....|. ...-.-......
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~~s~~~------~~l~nnp~l~~~ 238 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDSRSMFN------GDLMNNPQLMQL 238 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccchhhhc------cccccCHHHHHH
Confidence 99999999998 88998887765554432 233322 44444555545553212222222 222333445555
Q ss_pred HHHHhc
Q 048364 378 RKLMLN 383 (400)
Q Consensus 378 ~~~m~~ 383 (400)
...|..
T Consensus 239 ~~~m~~ 244 (304)
T KOG0553|consen 239 ASQMMK 244 (304)
T ss_pred HHHHhh
Confidence 666665
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0016 Score=55.12 Aligned_cols=143 Identities=13% Similarity=0.066 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhccCCCcc---cHHHHHHH-HHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048364 186 QIATILVDMYAKCGFLKYALMVFELMEERNVI---SWTALICG-SAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTAC 261 (400)
Q Consensus 186 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~-~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 261 (400)
.+|..++...-+.+..+.|..+|.+..+.... .|-..... |...++.+.|.++|+...+. ...+...+...+.-+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 46788888888888899999999999874433 34444344 33357777799999998876 455777788888888
Q ss_pred HhcCChhhHHHHHHHhhhhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCccHHHHHHHHHHH
Q 048364 262 VHTGLVDEGRKYFKMIDEEYDLEP-RIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNVIIWGSFLAAC 329 (400)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~~~~~~l~~~~ 329 (400)
.+.++.+.|..+|++......... ....|...++.=.+.|+.+.+.++.+++ ..-|+......++.-|
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLELFSDRY 150 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHHHCCT
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Confidence 999999999999999985322112 2357888888888999999999999888 4445544444444333
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.013 Score=44.76 Aligned_cols=133 Identities=9% Similarity=-0.006 Sum_probs=96.2
Q ss_pred CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHH
Q 048364 214 RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCM 293 (400)
Q Consensus 214 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 293 (400)
|++.....|..++.+.|+..+|...|++....-..-|......+.++....+++..|...++.+.+...-.-++...-.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 45556667888889999999999999988766556677888888888888999999999999887532111234455567
Q ss_pred HHHHHhcCChHHHHHHHHhc-cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048364 294 VDLFGKAGFLEEAYEVIRTM-RLEPNVIIWGSFLAACKEHKQFDMAERVIKQAL 346 (400)
Q Consensus 294 ~~~~~~~g~~~~a~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 346 (400)
.+.|...|++.+|+..|+.. ..-|+...-......+.++|+.+++..-+..+.
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 88899999999999999887 555655544444455667776666654444433
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00076 Score=59.55 Aligned_cols=115 Identities=12% Similarity=0.022 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhcc--ccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC----CCcccH
Q 048364 146 PDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE--WELNEQIATILVDMYAKCGFLKYALMVFELMEE----RNVISW 219 (400)
Q Consensus 146 p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~ 219 (400)
.+...+..+++.+....+++. +..++....... ...-..+..+++..|.+.|..+.+..+++.-.. ||..++
T Consensus 64 vS~~dld~fvn~~~~~~~~d~--~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDE--VEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHH--HHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 344444455555555444444 444444433331 111222333444444444444444444443332 444444
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048364 220 TALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACV 262 (400)
Q Consensus 220 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 262 (400)
|.+|..+.+.|++..|.++..+|...+...+..|+...+.+|.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 5555555555555444444444444443334444444444333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.012 Score=51.12 Aligned_cols=166 Identities=14% Similarity=0.076 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhccCC-C------cccHHHHHHHHHh---CCChhhHHHHHHHHHHCCCCCCHHHH
Q 048364 185 EQIATILVDMYAKCGFLKYALMVFELMEER-N------VISWTALICGSAH---RGYSEDALSLFEMMQATGVKPNEMTF 254 (400)
Q Consensus 185 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~------~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~ 254 (400)
..+...++-+|....+++...++.+.+... + ...-...+-++.+ .|+.++|+.++..+......+++.+|
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 334445666788899999999999998863 1 1222234455666 89999999999997666677888888
Q ss_pred HHHHHHHHh---------cCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChH----HHHHHH---Hhc-----
Q 048364 255 TGVLTACVH---------TGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLE----EAYEVI---RTM----- 313 (400)
Q Consensus 255 ~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~a~~~~---~~~----- 313 (400)
..+.+.|-+ ....++|+..|.+.- .+.|+...--.++..+...|... +..++- ..+
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg 297 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG 297 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc
Confidence 888877643 223667777777655 34455544333444444444322 222222 111
Q ss_pred --cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCc
Q 048364 314 --RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355 (400)
Q Consensus 314 --~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 355 (400)
.-..+-..+.+++.++.-.|++++|.+..++|.+.. | |..
T Consensus 298 ~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~-~-~~W 339 (374)
T PF13281_consen 298 SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK-P-PAW 339 (374)
T ss_pred cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC-C-cch
Confidence 123466677888999999999999999999999887 6 443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00026 Score=45.59 Aligned_cols=64 Identities=19% Similarity=0.237 Sum_probs=49.3
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcC
Q 048364 286 RIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHK-QFDMAERVIKQALRMV 349 (400)
Q Consensus 286 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~ 349 (400)
+...|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|+..+++.++..
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 3456777788888888888888888877 4455 5557777888888888 6888888888888766
|
... |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.004 Score=57.34 Aligned_cols=133 Identities=13% Similarity=0.033 Sum_probs=96.2
Q ss_pred CCCCCHHHHHHHHHHHHhcC-----ChhhHHHHHHHhhhhcCCCCC-hhhHHHHHHHHHhc--------CChHHHHHHHH
Q 048364 246 GVKPNEMTFTGVLTACVHTG-----LVDEGRKYFKMIDEEYDLEPR-IQHYGCMVDLFGKA--------GFLEEAYEVIR 311 (400)
Q Consensus 246 ~~~p~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------g~~~~a~~~~~ 311 (400)
+.+.+...|...+++..... +.+.|..+|+++.+ ..|+ ...|..+..++... .+...+.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 34567788988888855432 36789999999984 3565 34455444444322 12334444444
Q ss_pred hc-c---CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhcc
Q 048364 312 TM-R---LEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 312 ~~-~---~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
+. . ...+...|..+.......|++++|...++++++.+ | +...|..++.++...|+.++|.+.+++....
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~-p--s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE-M--SWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 43 1 23355678777777777899999999999999999 6 6889999999999999999999999988763
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0018 Score=50.31 Aligned_cols=60 Identities=10% Similarity=0.065 Sum_probs=30.5
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhhHHHHHHHhh
Q 048364 219 WTALICGSAHRGYSEDALSLFEMMQATGVKP--NEMTFTGVLTACVHTGLVDEGRKYFKMID 278 (400)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 278 (400)
|..+...+...|++++|+..|++.......| ...++..+..++...|++++|...++...
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444445555555555555555554432111 12345555555555566666666555555
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0023 Score=54.86 Aligned_cols=131 Identities=11% Similarity=0.010 Sum_probs=79.4
Q ss_pred ccHHHHHHHHHhCCChhhHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHhcCChhhHHHHHHHhhh---hcC-CCCCh
Q 048364 217 ISWTALICGSAHRGYSEDALSLFEMMQ----ATGVK-PNEMTFTGVLTACVHTGLVDEGRKYFKMIDE---EYD-LEPRI 287 (400)
Q Consensus 217 ~~~~~l~~~~~~~~~~~~a~~~~~~m~----~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~-~~~~~ 287 (400)
..|..|...|.-.|+++.|+..-+.-. +.|-+ .....+..+..++.-.|+++.|.+.|+.... +.| -....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 355666666666777777776544321 22221 1234566777777778888888877764431 111 12234
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhc--------cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048364 288 QHYGCMVDLFGKAGFLEEAYEVIRTM--------RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALR 347 (400)
Q Consensus 288 ~~~~~l~~~~~~~g~~~~a~~~~~~~--------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (400)
.+..+|...|.-..++++|+.++.+- ...-....+.+|..+|...|..++|+.+.+..++
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45556777777777788887777654 2222445677777788777877777777665554
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00042 Score=44.43 Aligned_cols=48 Identities=17% Similarity=0.155 Sum_probs=21.5
Q ss_pred cCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc
Q 048364 264 TGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313 (400)
Q Consensus 264 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 313 (400)
.|++++|.++|+.+... .+.+...+..++.+|.+.|++++|.++++++
T Consensus 4 ~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp TTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred ccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44445555555544432 1223344444445555555555555555544
|
... |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0059 Score=49.20 Aligned_cols=25 Identities=16% Similarity=0.025 Sum_probs=14.8
Q ss_pred hhhhHHHHHH-HhCCHHHHHHHHhhC
Q 048364 52 YVATSLLHEY-VVTSFGFARKLFDEL 76 (400)
Q Consensus 52 ~~~~~l~~~~-~~g~~~~a~~~~~~~ 76 (400)
..|+.-+.++ +....++|..-++..
T Consensus 70 q~wT~r~~~l~kLR~~~~a~~EL~~f 95 (366)
T KOG2796|consen 70 QLWTVRLALLVKLRLFQNAEMELEPF 95 (366)
T ss_pred HHHHHHHHHHHHHhhhHHHHhhhhhh
Confidence 3455555566 777777766655443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00031 Score=45.80 Aligned_cols=55 Identities=16% Similarity=0.210 Sum_probs=36.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 327 AACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 327 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
..|.+.+++++|...+++++..+ | .++..+...+.++...|++++|.+.++...+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-P-DDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-c-ccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34566666666666666666666 6 5666666666666666666666666666654
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0069 Score=43.52 Aligned_cols=108 Identities=16% Similarity=0.134 Sum_probs=64.2
Q ss_pred HHHHHHhCCChhhHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCC-ChhhHHHHHHHHH
Q 048364 222 LICGSAHRGYSEDALSLFEMMQATGVKPN--EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP-RIQHYGCMVDLFG 298 (400)
Q Consensus 222 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 298 (400)
+..++-..|+.++|+.+|++....|.... ...+-.+..++...|++++|..+++.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44566677888888888888877776544 23455666677778888888888887775321101 1222222344666
Q ss_pred hcCChHHHHHHHHhccCCccHHHHHHHHHHHH
Q 048364 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACK 330 (400)
Q Consensus 299 ~~g~~~~a~~~~~~~~~~p~~~~~~~l~~~~~ 330 (400)
..|+.++|++.+-.. +.++...|..-|..|.
T Consensus 87 ~~gr~~eAl~~~l~~-la~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA-LAETLPRYRRAIRFYA 117 (120)
T ss_pred HCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 778888877766543 1122334544444443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0015 Score=45.21 Aligned_cols=80 Identities=15% Similarity=0.141 Sum_probs=59.5
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhcCCC-CCCHHHHHHHHHHhhcccc--------hhhhhhhhhhhHHHhccccchH
Q 048364 115 WSAMIAAYLNAGAYDPGLKLFREMISNEGL-TPDQMTIGAVLSGCSHLGS--------VGLLMGKSAHGFIVKNEWELNE 185 (400)
Q Consensus 115 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~ll~~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~ 185 (400)
....|..+...+++.....+|+.++ +.|+ .|+..+|+.++.+.++..- .-. ...+++.+...++.|+.
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslk-RN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~--LLtvYqDiL~~~lKP~~ 104 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLK-RNGITLPSVELYNKVLKSIAKRELDSEDIENKLTN--LLTVYQDILSNKLKPND 104 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHH-hcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHH--HHHHHHHHHHhccCCcH
Confidence 3445566666799999999999998 7788 8999999999988766542 122 45567777777788888
Q ss_pred HHHHHHHHHHHh
Q 048364 186 QIATILVDMYAK 197 (400)
Q Consensus 186 ~~~~~l~~~~~~ 197 (400)
.+|+.++..+.+
T Consensus 105 etYnivl~~Llk 116 (120)
T PF08579_consen 105 ETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHH
Confidence 888877766544
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0032 Score=45.23 Aligned_cols=92 Identities=13% Similarity=0.023 Sum_probs=55.5
Q ss_pred HHHHHHhcCChhhHHHHHHHhhhhcCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHhc-cCCcc----HHHHHHHHHHH
Q 048364 257 VLTACVHTGLVDEGRKYFKMIDEEYDLEPR--IQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPN----VIIWGSFLAAC 329 (400)
Q Consensus 257 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~----~~~~~~l~~~~ 329 (400)
+..++-..|+.++|+.+|++... .|+... ...+-.+...+...|++++|..++++. .-.|+ ......+..++
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~-~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALA-AGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 34455667777777777777774 354443 334556666777777777777777776 22233 12222233456
Q ss_pred HhcCCHHHHHHHHHHHHHcC
Q 048364 330 KEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 330 ~~~~~~~~a~~~~~~~~~~~ 349 (400)
...|+.++|...+-......
T Consensus 86 ~~~gr~~eAl~~~l~~la~~ 105 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALAET 105 (120)
T ss_pred HHCCCHHHHHHHHHHHHHHH
Confidence 66777777777776655433
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.041 Score=45.46 Aligned_cols=50 Identities=18% Similarity=0.073 Sum_probs=22.8
Q ss_pred HHHcCCChHHHHHHHhhCCC--CC-hhh---HHHHHHHHHhcCCcchHHHHHHHHH
Q 048364 90 GYSKSGNVCEARDFFERMPL--RN-VAS---WSAMIAAYLNAGAYDPGLKLFREMI 139 (400)
Q Consensus 90 ~~~~~~~~~~a~~~~~~~~~--~~-~~~---~~~l~~~~~~~g~~~~a~~~~~~m~ 139 (400)
.+.+.|++++|++.|+.+.. |+ ... .-.++.+|.+.+++++|...+++..
T Consensus 41 ~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi 96 (243)
T PRK10866 41 QKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFI 96 (243)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 33445555555555555441 11 111 1223344555555555555555555
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.088 Score=48.76 Aligned_cols=121 Identities=10% Similarity=0.030 Sum_probs=79.0
Q ss_pred CCCchhHHHHHHHhcccchhHHHHHHHHHHHHh-Cccc--------chhhhhHHHHHHHhCCHHHHHHHHhhCCCCChhh
Q 048364 13 PSDSFSILHILKSCTHFNNLTVIHHLHSHILKL-GFIS--------HVYVATSLLHEYVVTSFGFARKLFDELPERNAVT 83 (400)
Q Consensus 13 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~--------~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~ 83 (400)
.|.+..|..+.+.....-.++.|...|-+.... |++. +...-.+=+.+ -.|++++|.+++-++.++|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~-~~g~feeaek~yld~drrDL-- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA-FYGEFEEAEKLYLDADRRDL-- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh-hhcchhHhhhhhhccchhhh--
Confidence 577888888888877777777777777554332 2211 00011111111 45889999999988877764
Q ss_pred HHHHHHHHHcCCChHHHHHHHhhCCCC-----ChhhHHHHHHHHHhcCCcchHHHHHHHHH
Q 048364 84 WNTMIKGYSKSGNVCEARDFFERMPLR-----NVASWSAMIAAYLNAGAYDPGLKLFREMI 139 (400)
Q Consensus 84 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 139 (400)
.+....+.|++-...++++.-..- -..+|+.+...+.....|++|.+.|..-.
T Consensus 766 ---Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~ 823 (1189)
T KOG2041|consen 766 ---AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG 823 (1189)
T ss_pred ---hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 356667778888888877664322 23578888888888888888888876553
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00061 Score=58.20 Aligned_cols=133 Identities=12% Similarity=0.024 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHH---hhhhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhc-------c-CCccH
Q 048364 252 MTFTGVLTACVHTGLVDEGRKYFKM---IDEEYDLEP-RIQHYGCMVDLFGKAGFLEEAYEVIRTM-------R-LEPNV 319 (400)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~a~~~~~~---~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-------~-~~p~~ 319 (400)
..|..|...|.-.|+++.|+...+. +.+++|-+. ....+..+..++.-.|+++.|.+.|+.. + .....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 3455566666667899999876653 222344333 3457888999999999999999988865 2 12244
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhcc
Q 048364 320 IIWGSFLAACKEHKQFDMAERVIKQALR----MVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 320 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
.+..+|..+|.-..++++|+.++.+-+. .+.......++..|..+|...|..++|+.+.+.-.+.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 4566778888888899999988776443 2212256789999999999999999999887766543
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.098 Score=48.80 Aligned_cols=131 Identities=11% Similarity=0.098 Sum_probs=84.7
Q ss_pred HhCCCCCCchhHHH-----HHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhC---CHHHHHHHHhhCCC
Q 048364 8 HRQSVPSDSFSILH-----ILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVT---SFGFARKLFDELPE 78 (400)
Q Consensus 8 ~~~g~~p~~~~~~~-----l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g---~~~~a~~~~~~~~~ 78 (400)
.+-|++.+..-|.. ++.-+...+.+..|.++-..+-..-... ..++......+ +.. +.+-+..+-+++..
T Consensus 424 ~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~ 502 (829)
T KOG2280|consen 424 VRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA 502 (829)
T ss_pred cccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcc
Confidence 45588887776655 4556667788999999988774432222 56677777666 432 23344444455554
Q ss_pred --CChhhHHHHHHHHHcCCChHHHHHHHhhCCCC--------ChhhHHHHHHHHHhcCCcchHHHHHHHHH
Q 048364 79 --RNAVTWNTMIKGYSKSGNVCEARDFFERMPLR--------NVASWSAMIAAYLNAGAYDPGLKLFREMI 139 (400)
Q Consensus 79 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 139 (400)
....+|..+..-....|+.+-|..+++.=+.. +..-+...+.-..+.|+.+-...++-.+.
T Consensus 503 ~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk 573 (829)
T KOG2280|consen 503 KLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLK 573 (829)
T ss_pred cCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 45567888888888899999999888753311 22344455666677777777777766664
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.002 Score=53.64 Aligned_cols=96 Identities=10% Similarity=0.055 Sum_probs=45.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhhhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCcc----HHHHHHHHH
Q 048364 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP-RIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPN----VIIWGSFLA 327 (400)
Q Consensus 254 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~----~~~~~~l~~ 327 (400)
|...+....+.|++++|...|+.+.+.+.-.+ ....+..+..+|...|++++|...|+.+ ...|+ ...+-.+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 33333333444556666666655554321110 0133444555555556666665555555 21221 223333344
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC
Q 048364 328 ACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 328 ~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
.+...|+.++|...++++++..
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC
Confidence 4555555666666666555555
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0019 Score=50.59 Aligned_cols=58 Identities=16% Similarity=0.210 Sum_probs=41.8
Q ss_pred HHHHhc--cCCCcccHHHHHHHHHh-----CCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048364 206 MVFELM--EERNVISWTALICGSAH-----RGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVH 263 (400)
Q Consensus 206 ~~~~~~--~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 263 (400)
..|+.. ...+-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.|++.+=+
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK 99 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK 99 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC
Confidence 344444 33566667777776654 46677777788889999999999999999987754
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.082 Score=45.47 Aligned_cols=118 Identities=19% Similarity=0.183 Sum_probs=62.7
Q ss_pred cchhHHHHHHHHHHHHhCcccchhhhhHHHHHH---HhCCHHHHHHHHhhCCC-CChhh--HHHHHHHHHcCCChHHHHH
Q 048364 29 FNNLTVIHHLHSHILKLGFISHVYVATSLLHEY---VVTSFGFARKLFDELPE-RNAVT--WNTMIKGYSKSGNVCEARD 102 (400)
Q Consensus 29 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~g~~~~a~~~~~~~~~-~~~~~--~~~l~~~~~~~~~~~~a~~ 102 (400)
.|+-..|.++-.+..+. +..|..-.-.++.+- -.|+++.|.+-|+.|.. |.... ...|.-.--+.|..+.|..
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~ 175 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARH 175 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHH
Confidence 45555666555443321 222333333333333 66777777777777763 32211 2222222345666666666
Q ss_pred HHhhCCC--C-ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCC
Q 048364 103 FFERMPL--R-NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPD 147 (400)
Q Consensus 103 ~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~ 147 (400)
.-++... | -...+.+.+...+..|+|+.|+++.+.-+...-+.++
T Consensus 176 yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~ 223 (531)
T COG3898 176 YAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKD 223 (531)
T ss_pred HHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchh
Confidence 6655432 2 3346666777777777777777777766533334444
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.14 Score=47.85 Aligned_cols=316 Identities=12% Similarity=0.055 Sum_probs=182.8
Q ss_pred HhCcccchhhhh-----HHHHHH-HhCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHcCCC---hHHHHHHHhhCCC--
Q 048364 44 KLGFISHVYVAT-----SLLHEY-VVTSFGFARKLFDELPERN---AVTWNTMIKGYSKSGN---VCEARDFFERMPL-- 109 (400)
Q Consensus 44 ~~~~~~~~~~~~-----~l~~~~-~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~-- 109 (400)
..|+..+..-|. .++.-+ ..+.+..|+++-+.+..|. ...|.....-+.+..+ -+-+..+=+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 556655554443 345555 7888999999998888765 4556666666665532 2334444445555
Q ss_pred CChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCC-CC---CHHHHHHHHHHhhcccchhhhhhhhhhhHHHhcc-----
Q 048364 110 RNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGL-TP---DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE----- 180 (400)
Q Consensus 110 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-~p---~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~----- 180 (400)
.+..+|..+.+-....|+.+-|..+++.=. ..+. .| +..-+..-+.-+.+.|+.+. ...++-.+...-
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~-~~~~qV~lLL~m~~~~~AL~kaies~d~~L--i~~Vllhlk~~~~~s~l 581 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELEP-RSGEQVPLLLKMKDSSLALKKAIESGDTDL--IIQVLLHLKNKLNRSSL 581 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcCC-CccchhHHHhccchHHHHHHHHHhcCCchh--HHHHHHHHHHHHHHHHH
Confidence 466788888888888999999988875432 1111 11 22345566777788888877 666555544421
Q ss_pred ------ccchHHHHHHHHH--------HHHhcCCHHHHHHHHH--hccC-----CCcccHHHHHHHHHhCCChh------
Q 048364 181 ------WELNEQIATILVD--------MYAKCGFLKYALMVFE--LMEE-----RNVISWTALICGSAHRGYSE------ 233 (400)
Q Consensus 181 ------~~~~~~~~~~l~~--------~~~~~g~~~~A~~~~~--~~~~-----~~~~~~~~l~~~~~~~~~~~------ 233 (400)
.+.....|.-++. .+.+.++-..+...|. .... +-..........+.+.....
T Consensus 582 ~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ 661 (829)
T KOG2280|consen 582 FMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKAL 661 (829)
T ss_pred HHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHH
Confidence 1111222222221 0011111111111111 1000 11111222333444433311
Q ss_pred ----hHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 048364 234 ----DALSLFEMMQA-TGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308 (400)
Q Consensus 234 ----~a~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 308 (400)
+-+.+.+.+.. .|.....-+.+--+.-+...|+..+|.++-.+.+ -||-..|---+.+++..+++++-++
T Consensus 662 ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLek 736 (829)
T KOG2280|consen 662 EDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEK 736 (829)
T ss_pred HHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHH
Confidence 11122222222 2333344455666667778888888888877665 4788888888889999999998888
Q ss_pred HHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHH
Q 048364 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKL 380 (400)
Q Consensus 309 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 380 (400)
+-+... .+.-|.-+..+|.+.|+.++|.+++-+. + +.. ..+.+|.+.|++.+|.++--+
T Consensus 737 fAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv-----~-~l~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 737 FAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRV-----G-GLQ----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHhccC---CCCCchhHHHHHHhcccHHHHhhhhhcc-----C-ChH----HHHHHHHHhccHHHHHHHHHH
Confidence 887762 1334555788899999999998877654 2 111 567788888888888775443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00078 Score=50.95 Aligned_cols=70 Identities=17% Similarity=0.230 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHh-----ccccccccCc
Q 048364 321 IWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLML-----NQNVRKARGS 392 (400)
Q Consensus 321 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~~~~~~~~~ 392 (400)
....++..+...|++++|..++++++... | .+...+..++.+|...|+..+|.+.|+++. +.|+.|+|.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-P-YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-T-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-C-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 45566777888899999999999999998 8 888899999999999999999999888774 3578777754
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0032 Score=47.28 Aligned_cols=84 Identities=10% Similarity=-0.014 Sum_probs=37.9
Q ss_pred HhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cC-CccHHHHHHHHHHHHhcCCHHHHH
Q 048364 262 VHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RL-EPNVIIWGSFLAACKEHKQFDMAE 339 (400)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~ 339 (400)
-..|++++|..+|..+..- + .-+..-+..|..++-..+++++|...|... -+ .-|...+-....++...|+.+.|.
T Consensus 48 y~~Gk~~eA~~~F~~L~~~-d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIY-D-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHh-C-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHH
Confidence 3455555555555554421 1 123333444555555555555555555544 00 112222223344555555555555
Q ss_pred HHHHHHHH
Q 048364 340 RVIKQALR 347 (400)
Q Consensus 340 ~~~~~~~~ 347 (400)
..|+.++.
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 55555544
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.001 Score=44.00 Aligned_cols=58 Identities=14% Similarity=0.212 Sum_probs=27.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhc-------c-CCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048364 289 HYGCMVDLFGKAGFLEEAYEVIRTM-------R-LEPN-VIIWGSFLAACKEHKQFDMAERVIKQAL 346 (400)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~-------~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 346 (400)
+++.+...|...|++++|++.|++. + ..|+ ..++..+..++...|++++|++++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444455555555555555554443 1 1111 2344555555555555555555555544
|
... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.071 Score=48.86 Aligned_cols=91 Identities=12% Similarity=0.050 Sum_probs=48.2
Q ss_pred HhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChh
Q 048364 209 ELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQ 288 (400)
Q Consensus 209 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 288 (400)
.++...+..+...+...+.+...+.-|-++|.+|-+. ..+++.+...++|++|..+-+... .+.||+
T Consensus 740 rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hP---e~~~dV- 806 (1081)
T KOG1538|consen 740 RKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHP---EFKDDV- 806 (1081)
T ss_pred hhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCc---cccccc-
Confidence 3333344444555555555566666677777666432 345566667777777777666554 233443
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhc
Q 048364 289 HYGCMVDLFGKAGFLEEAYEVIRTM 313 (400)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~ 313 (400)
|....+-++...++++|.+.|.+.
T Consensus 807 -y~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 807 -YMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred -cchHHHHhhhhhhHHHHHHHHHHh
Confidence 333344444455555554444433
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.025 Score=46.86 Aligned_cols=101 Identities=12% Similarity=0.096 Sum_probs=80.3
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhc---CChHHHHHHHHhc-cCCc-cHHHH
Q 048364 248 KPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA---GFLEEAYEVIRTM-RLEP-NVIIW 322 (400)
Q Consensus 248 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~-~~~p-~~~~~ 322 (400)
+-|...|-.|..+|...|+.+.|..-|.+..+- ..+++..+..+..++... ....++..+|+++ ...| |+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 337789999999999999999999999998853 344566666777765543 3456888999998 5566 56667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048364 323 GSFLAACKEHKQFDMAERVIKQALRMVKP 351 (400)
Q Consensus 323 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 351 (400)
..|...+...|++.+|...|+.|.+.. |
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l-p 258 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLL-P 258 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC-C
Confidence 777888999999999999999999998 6
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.058 Score=43.32 Aligned_cols=167 Identities=11% Similarity=0.064 Sum_probs=94.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccC--CC----cccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048364 190 ILVDMYAKCGFLKYALMVFELMEE--RN----VISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVH 263 (400)
Q Consensus 190 ~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 263 (400)
.....+...|++++|.+.|+.+.. |+ ....-.++.++.+.|+++.|...+++..+.-..-....+...+.+.+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHH
Confidence 345556678888888888888875 32 124455677788888888888888887765222112222222222221
Q ss_pred cC-------------ChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhccCCccHHHHHHHHHHHH
Q 048364 264 TG-------------LVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACK 330 (400)
Q Consensus 264 ~~-------------~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~~~~~~~l~~~~~ 330 (400)
.. ...+|.. .+..++.-|=......+|...+..+...--..- -.+...|.
T Consensus 90 ~~~~~~~~~~~~D~~~~~~A~~----------------~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e-~~ia~~Y~ 152 (203)
T PF13525_consen 90 YKQIPGILRSDRDQTSTRKAIE----------------EFEELIKRYPNSEYAEEAKKRLAELRNRLAEHE-LYIARFYY 152 (203)
T ss_dssp HHHHHHHH-TT---HHHHHHHH----------------HHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHhCccchhcccChHHHHHHHH----------------HHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 11 1122222 233444444445555555555555421111111 12567789
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCCc---hHHHHHHHHhhcccchHHHH
Q 048364 331 EHKQFDMAERVIKQALRMVKPENDG---GVFTLICDLYTMNEKWEGAE 375 (400)
Q Consensus 331 ~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~ 375 (400)
+.|.+..|..-++.+++.- | .+. .+...++.+|.+.|..+.+.
T Consensus 153 ~~~~y~aA~~r~~~v~~~y-p-~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 153 KRGKYKAAIIRFQYVIENY-P-DTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp CTT-HHHHHHHHHHHHHHS-T-TSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HcccHHHHHHHHHHHHHHC-C-CCchHHHHHHHHHHHHHHhCChHHHH
Confidence 9999999999999999987 6 333 34567778888888877443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.013 Score=48.86 Aligned_cols=94 Identities=10% Similarity=0.063 Sum_probs=61.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhc-cCCccH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CCchHHHHH
Q 048364 289 HYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNV----IIWGSFLAACKEHKQFDMAERVIKQALRMVKPE--NDGGVFTLI 361 (400)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~l 361 (400)
.|...+..+.+.|++++|...|+.+ ...|+. ..+--+..+|...|++++|...|+.+++.. |. ..+.++..+
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-P~s~~~~dAl~kl 223 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-PKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCcchhHHHHHH
Confidence 3444444445667777777777777 334432 345556677777788888888888777665 41 234455555
Q ss_pred HHHhhcccchHHHHHHHHHHhc
Q 048364 362 CDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 362 ~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
+.++...|++++|..+++++++
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 6677777788888877777664
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.019 Score=52.33 Aligned_cols=85 Identities=15% Similarity=0.098 Sum_probs=49.1
Q ss_pred HHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC--CCcc----------
Q 048364 150 TIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE--RNVI---------- 217 (400)
Q Consensus 150 ~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~---------- 217 (400)
+...+..-+.+...+.. |.++|..+-+. ..+++.....++|++|.++-++.++ +|+.
T Consensus 749 ~l~~~a~ylk~l~~~gL--AaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGL--AAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAEN 817 (1081)
T ss_pred HHHHHHHHHhhccccch--HHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhh
Confidence 34333333444444444 55555544332 2355666677777777777777765 2321
Q ss_pred -cHHHHHHHHHhCCChhhHHHHHHHHHHC
Q 048364 218 -SWTALICGSAHRGYSEDALSLFEMMQAT 245 (400)
Q Consensus 218 -~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 245 (400)
-|...-.+|.+.|+..+|..+++++...
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 1223335677888888888888877554
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0031 Score=41.01 Aligned_cols=56 Identities=21% Similarity=0.358 Sum_probs=41.4
Q ss_pred HHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048364 295 DLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKP 351 (400)
Q Consensus 295 ~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 351 (400)
..|.+.+++++|.++++.+ ...| +...+.....++.+.|++++|...+++..+.. |
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~-p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS-P 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC-C
Confidence 4567778888888888877 4445 44456667777788888888888888888777 6
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.14 Score=44.12 Aligned_cols=112 Identities=13% Similarity=0.196 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhccCCccHHHHHHHHHHHHh
Q 048364 252 MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKE 331 (400)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~ 331 (400)
.+.+..+.-|...|+...|.++-.+. + -|+...|...+.+|+..++|++-.++... +..+.-|..++.+|.+
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----K-VPDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 35555666677788877777665444 3 37888888889999999999888876553 2234667888899999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHh
Q 048364 332 HKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLML 382 (400)
Q Consensus 332 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 382 (400)
.|+..+|..++.++ + + ..-+..|.+.|+|.+|.+.--+..
T Consensus 250 ~~~~~eA~~yI~k~-----~--~----~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 250 YGNKKEASKYIPKI-----P--D----EERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred CCCHHHHHHHHHhC-----C--h----HHHHHHHHHCCCHHHHHHHHHHcC
Confidence 99998888887762 3 1 445567788888888876644443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.14 Score=44.08 Aligned_cols=254 Identities=15% Similarity=0.068 Sum_probs=161.3
Q ss_pred CCCCchhHHHHHHHhc--ccchhHHHHHHHHHHHHhCcccchh--hhhHHHHHH-HhCCHHHHHHHHhhCCC--C-Chhh
Q 048364 12 VPSDSFSILHILKSCT--HFNNLTVIHHLHSHILKLGFISHVY--VATSLLHEY-VVTSFGFARKLFDELPE--R-NAVT 83 (400)
Q Consensus 12 ~~p~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~-~~g~~~~a~~~~~~~~~--~-~~~~ 83 (400)
+.-|..-...|+.+-. -.|+.+.|.+-|+.|... |... -...|.-.- +.|+.+.|.++-+.... | -...
T Consensus 114 lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA 190 (531)
T COG3898 114 LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWA 190 (531)
T ss_pred hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchH
Confidence 4456666666766654 469999999999999762 2222 122233333 88999999999887764 2 4567
Q ss_pred HHHHHHHHHcCCChHHHHHHHhhCC-----CCChh--hHHHHHHHHH---hcCCcchHHHHHHHHHhcCCCCCCHHH-HH
Q 048364 84 WNTMIKGYSKSGNVCEARDFFERMP-----LRNVA--SWSAMIAAYL---NAGAYDPGLKLFREMISNEGLTPDQMT-IG 152 (400)
Q Consensus 84 ~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~--~~~~l~~~~~---~~g~~~~a~~~~~~m~~~~~~~p~~~~-~~ 152 (400)
+.+.+...|..|+++.|+++++.-. ++++. .-..|+.+-. -..+...|...-.+.. .+.||... -.
T Consensus 191 ~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~---KL~pdlvPaav 267 (531)
T COG3898 191 ARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEAN---KLAPDLVPAAV 267 (531)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh---hcCCccchHHH
Confidence 8899999999999999999998754 34432 1122222211 1234555555555444 56676543 23
Q ss_pred HHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHH----HHHHHhccCCCcccHHHHHHHHHh
Q 048364 153 AVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYA----LMVFELMEERNVISWTALICGSAH 228 (400)
Q Consensus 153 ~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A----~~~~~~~~~~~~~~~~~l~~~~~~ 228 (400)
.-.+++.+.|+..+ +-.+++.+-+....|+.. ++..+.+.|+.... .+-+..|+..+..+...+..+-..
T Consensus 268 ~AAralf~d~~~rK--g~~ilE~aWK~ePHP~ia----~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAld 341 (531)
T COG3898 268 VAARALFRDGNLRK--GSKILETAWKAEPHPDIA----LLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALD 341 (531)
T ss_pred HHHHHHHhccchhh--hhhHHHHHHhcCCChHHH----HHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHh
Confidence 34566778888888 888888888876666532 22234455653321 123445555666677777777777
Q ss_pred CCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCChhhHHHHHHHhhh
Q 048364 229 RGYSEDALSLFEMMQATGVKPNEMTFTGVLTACV-HTGLVDEGRKYFKMIDE 279 (400)
Q Consensus 229 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~ 279 (400)
.|++..|..--+...+ ..|....|..+.+.-. ..|+-.++.+.+.+..+
T Consensus 342 a~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 342 AGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred ccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 8888777665554444 3677777777766543 44888888888777764
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.085 Score=42.84 Aligned_cols=133 Identities=10% Similarity=0.038 Sum_probs=98.8
Q ss_pred ccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHH----
Q 048364 217 ISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGC---- 292 (400)
Q Consensus 217 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---- 292 (400)
..-+.++..+.-.|.+.-...++++..+...+-++.....+.+.-.+.|+.+.|..+|+...+..+ ..+....+.
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHh
Confidence 345667777777888888999999998876666778888899999999999999999998775433 333333333
Q ss_pred -HHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048364 293 -MVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKP 351 (400)
Q Consensus 293 -l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 351 (400)
....|.-++++..|...+.++ ...| |....|.=.-+..-.|+..+|.+.++.|.... |
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~-P 317 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD-P 317 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC-C
Confidence 334566778899999999888 2233 44455554555566789999999999999987 6
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.18 Score=43.94 Aligned_cols=166 Identities=13% Similarity=0.016 Sum_probs=108.5
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHHCC---CCCCHHHHHHHHHHHHh---cCChhhHHHHHHHhhhhcCCCCChhhHHH
Q 048364 219 WTALICGSAHRGYSEDALSLFEMMQATG---VKPNEMTFTGVLTACVH---TGLVDEGRKYFKMIDEEYDLEPRIQHYGC 292 (400)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 292 (400)
-..++-+|....+++..+++.+.+.... +.-+...-....-++.+ .|+.++|.+++..+... .-.+++.+|..
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~gL 222 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTLGL 222 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHHHH
Confidence 3345557999999999999999998752 11122222234445666 89999999999995533 55678888888
Q ss_pred HHHHHHh---------cCChHHHHHHHHhc-cCCccHHHHHHHHHHHHhcCCHH----HHHHHH----HHHHHcCC--CC
Q 048364 293 MVDLFGK---------AGFLEEAYEVIRTM-RLEPNVIIWGSFLAACKEHKQFD----MAERVI----KQALRMVK--PE 352 (400)
Q Consensus 293 l~~~~~~---------~g~~~~a~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~----~a~~~~----~~~~~~~~--~~ 352 (400)
+++.|-. ....++|...|.+. .+.||...--.++..+...|... +..++- ....+++. +.
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 8877642 22477889999888 66676654333333333334211 222222 22223332 33
Q ss_pred CCchHHHHHHHHhhcccchHHHHHHHHHHhccc
Q 048364 353 NDGGVFTLICDLYTMNEKWEGAERVRKLMLNQN 385 (400)
Q Consensus 353 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 385 (400)
.+...+..++.++.-.|++++|.+..++|.+..
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 566677788888999999999999999998753
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.28 Score=45.70 Aligned_cols=185 Identities=10% Similarity=0.048 Sum_probs=101.5
Q ss_pred cchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCCC-----ChhhHHHHHHHHHcCCChHHHHH
Q 048364 29 FNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPER-----NAVTWNTMIKGYSKSGNVCEARD 102 (400)
Q Consensus 29 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~ 102 (400)
-|++++|.++|-.|-++. ..+... +.|++-...++++.-... -...|+.+...++....+++|.+
T Consensus 747 ~g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred hcchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888876665543 235566 888888888887765432 23567888888888888888888
Q ss_pred HHhhCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhcccc
Q 048364 103 FFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182 (400)
Q Consensus 103 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~ 182 (400)
.|..-.. . ...+.++.+..++++-..+...+ +-++...-.+...+.+.|-.++ |.+.+ ++.+.+
T Consensus 818 yY~~~~~--~---e~~~ecly~le~f~~LE~la~~L------pe~s~llp~~a~mf~svGMC~q--AV~a~---Lr~s~p 881 (1189)
T KOG2041|consen 818 YYSYCGD--T---ENQIECLYRLELFGELEVLARTL------PEDSELLPVMADMFTSVGMCDQ--AVEAY---LRRSLP 881 (1189)
T ss_pred HHHhccc--h---HhHHHHHHHHHhhhhHHHHHHhc------CcccchHHHHHHHHHhhchHHH--HHHHH---HhccCc
Confidence 8766431 1 12345555555555544443333 2233334444555555555444 33222 111111
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccH--------------HHHHHHHHhCCChhhHHHHHHHHHH
Q 048364 183 LNEQIATILVDMYAKCGFLKYALMVFELMEERNVISW--------------TALICGSAHRGYSEDALSLFEMMQA 244 (400)
Q Consensus 183 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~l~~~~~~~~~~~~a~~~~~~m~~ 244 (400)
...+..+...++|.+|.++-+...-|.+.+. ---|..+.+.|++-+|-+++.+|.+
T Consensus 882 ------kaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 882 ------KAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 1233445555666666665554443322221 1124445666777667777766644
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0015 Score=43.16 Aligned_cols=65 Identities=14% Similarity=0.201 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CC--CCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 319 VIIWGSFLAACKEHKQFDMAERVIKQALRMVK---PE--NDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 319 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
..+++.+...|...|++++|+..+++.++... +. ....++..++.+|...|++++|++.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34789999999999999999999999986521 10 1256888999999999999999999998764
|
... |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.011 Score=43.02 Aligned_cols=51 Identities=8% Similarity=0.169 Sum_probs=35.1
Q ss_pred CCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHH
Q 048364 247 VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297 (400)
Q Consensus 247 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 297 (400)
..|+..+..+++.+|+..+++..|.++.+...+.++++.+...|..|++-.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 456677777777777777777777777777777777666666666666643
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.017 Score=46.45 Aligned_cols=56 Identities=18% Similarity=0.237 Sum_probs=37.3
Q ss_pred HHHHHHcCCChHHHHHHHhhCCC--C----ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcC
Q 048364 87 MIKGYSKSGNVCEARDFFERMPL--R----NVASWSAMIAAYLNAGAYDPGLKLFREMISNE 142 (400)
Q Consensus 87 l~~~~~~~~~~~~a~~~~~~~~~--~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 142 (400)
....+.+.|++++|++.|+.+.. | -..+.-.++.++.+.|+++.|...++.+.+..
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 44456677888888888887751 2 22355567778888888888888888887443
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.012 Score=46.35 Aligned_cols=87 Identities=10% Similarity=0.109 Sum_probs=46.8
Q ss_pred ChhhHHHHHHHHHhc-----CCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccc----------------chhhhhh
Q 048364 111 NVASWSAMIAAYLNA-----GAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLG----------------SVGLLMG 169 (400)
Q Consensus 111 ~~~~~~~l~~~~~~~-----g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~----------------~~~~~~a 169 (400)
+-.+|..+++.|.+. |..+=....+..|. +-|+.-|..+|+.||..+=+.. +.+. +
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~-efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c--~ 122 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMD-EFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQEC--A 122 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHH-HcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHH--H
Confidence 444444444444332 33444444444444 4455555555555555443211 1122 7
Q ss_pred hhhhhHHHhccccchHHHHHHHHHHHHhcCC
Q 048364 170 KSAHGFIVKNEWELNEQIATILVDMYAKCGF 200 (400)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 200 (400)
..+++.|...|+-||..++..+++.+.+.+.
T Consensus 123 i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 123 IDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 7777777777777777777777777755443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.013 Score=42.59 Aligned_cols=46 Identities=20% Similarity=0.288 Sum_probs=24.2
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHhc----cCCccHHHHHHHHH
Q 048364 282 DLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM----RLEPNVIIWGSFLA 327 (400)
Q Consensus 282 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~p~~~~~~~l~~ 327 (400)
...|+..+..+++.+|+..|++..|+++++.. +++-+..+|..|+.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 44455555555555555555555555555554 43334445555544
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.1 Score=37.48 Aligned_cols=141 Identities=12% Similarity=0.107 Sum_probs=86.9
Q ss_pred HHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHH
Q 048364 226 SAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEE 305 (400)
Q Consensus 226 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 305 (400)
+.-.|..++..++..+.... .+..-+|.+|--....-+-+-..++++.+-+-+.+. .+|+...
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKr 74 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKR 74 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHH
Confidence 34467777788887777654 255666767666666666666666666665432222 2333333
Q ss_pred HHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhccc
Q 048364 306 AYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQN 385 (400)
Q Consensus 306 a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 385 (400)
....+-.++ .+....+..+.....+|+-+.-.+++.++.+.+ . +++.....+..+|.+.|+..++.+++++.-+.|
T Consensus 75 Vi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~-~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 75 VIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-E-INPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-C-CCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 333333332 234455667788899999999999999988755 4 688999999999999999999999999999888
Q ss_pred cc
Q 048364 386 VR 387 (400)
Q Consensus 386 ~~ 387 (400)
++
T Consensus 151 ~k 152 (161)
T PF09205_consen 151 LK 152 (161)
T ss_dssp -H
T ss_pred hH
Confidence 74
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0047 Score=35.41 Aligned_cols=41 Identities=27% Similarity=0.470 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHH
Q 048364 321 IWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICD 363 (400)
Q Consensus 321 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 363 (400)
++..+...|.+.|++++|+++++++++.. | .++..+..++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P-~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD-P-DDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-c-CCHHHHHHhhh
Confidence 56678888999999999999999999988 8 77777776653
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0086 Score=52.74 Aligned_cols=98 Identities=12% Similarity=0.015 Sum_probs=73.8
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCccH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHH
Q 048364 285 PRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNV----IIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359 (400)
Q Consensus 285 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 359 (400)
.+...++.+..+|.+.|++++|+..|++. .+.|+. .+|..+..+|...|+.++|+..++++++.. + + .|.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n-~---~f~ 147 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-N-L---KFS 147 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-c-h---hHH
Confidence 35678899999999999999999999997 777874 358999999999999999999999999975 3 2 222
Q ss_pred HHHH--HhhcccchHHHHHHHHHHhccccc
Q 048364 360 LICD--LYTMNEKWEGAERVRKLMLNQNVR 387 (400)
Q Consensus 360 ~l~~--~~~~~g~~~~a~~~~~~m~~~~~~ 387 (400)
.+.. .+....+.++..++++...+.|..
T Consensus 148 ~i~~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 148 TILNDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred HHHhCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 1111 112233445777788888877764
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.48 Score=43.38 Aligned_cols=333 Identities=13% Similarity=0.081 Sum_probs=194.2
Q ss_pred cccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH--HhCCHHHHHHHHhhCCC------CChhhHHHHHHHHHcCCChH
Q 048364 27 THFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY--VVTSFGFARKLFDELPE------RNAVTWNTMIKGYSKSGNVC 98 (400)
Q Consensus 27 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~g~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~ 98 (400)
.+.|..+.+.++|++.++. ++.+...|...+..+ ..|+.+.....|+.... .....|...|..-..++++.
T Consensus 90 ~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k 168 (577)
T KOG1258|consen 90 YKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWK 168 (577)
T ss_pred HHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHH
Confidence 3567788888888887653 556777888888877 77888888888887764 25566888888888888888
Q ss_pred HHHHHHhhCCCCChhhHHHHHHHHHh---c------CCcchHHHHHHHHHhc------------------CCCCCCH-H-
Q 048364 99 EARDFFERMPLRNVASWSAMIAAYLN---A------GAYDPGLKLFREMISN------------------EGLTPDQ-M- 149 (400)
Q Consensus 99 ~a~~~~~~~~~~~~~~~~~l~~~~~~---~------g~~~~a~~~~~~m~~~------------------~~~~p~~-~- 149 (400)
....+|++..+-....|+..-.-|.+ . ...+++.++-.....+ .-..|.. .
T Consensus 169 ~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~ 248 (577)
T KOG1258|consen 169 RVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLT 248 (577)
T ss_pred HHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhh
Confidence 88888888764433333333322221 1 1122222222211100 0001110 0
Q ss_pred -HHHHHHHHhhcc-------cchhhhhhhhhhhHHHhcc-------ccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 048364 150 -TIGAVLSGCSHL-------GSVGLLMGKSAHGFIVKNE-------WELNEQIATILVDMYAKCGFLKYALMVFELMEER 214 (400)
Q Consensus 150 -~~~~ll~~~~~~-------~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 214 (400)
..+.+-..+... -.... ....++.-.+.. ..++..+|..-+..-...|+++.+.-+|+...-|
T Consensus 249 ~~~~~l~~~~~~~~~~~~~s~~~~~--kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~ 326 (577)
T KOG1258|consen 249 EEKTILKRIVSIHEKVYQKSEEEEE--KRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP 326 (577)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhHHH--HHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH
Confidence 011111111100 00111 111111111111 1235567788888888999999999999998764
Q ss_pred C---cccHHHHHHHHHhCCChhhHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCCh-h
Q 048364 215 N---VISWTALICGSAHRGYSEDALSLFEMMQATGVK--PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRI-Q 288 (400)
Q Consensus 215 ~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~ 288 (400)
- ...|-..+.-....|+.+-|..++....+--++ |....+.+.+ +-..|+++.|..+++.+..+ . |+. .
T Consensus 327 cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e--~-pg~v~ 401 (577)
T KOG1258|consen 327 CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESE--Y-PGLVE 401 (577)
T ss_pred HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhh--C-Cchhh
Confidence 2 234555555555569988888887766554333 3333333222 34468999999999999864 3 543 2
Q ss_pred hHHHHHHHHHhcCChHHHH---HHHHhc-cCCccHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHHcCCCCCCchHHH
Q 048364 289 HYGCMVDLFGKAGFLEEAY---EVIRTM-RLEPNVIIWGSFLA-----ACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359 (400)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~---~~~~~~-~~~p~~~~~~~l~~-----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 359 (400)
.-..-+....+.|+.+.+. +++... ...-+..+...+.- .+.-.++.+.|..++.++.+.. | ++...|.
T Consensus 402 ~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~-~-~~k~~~~ 479 (577)
T KOG1258|consen 402 VVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDIL-P-DCKVLYL 479 (577)
T ss_pred hHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcC-C-ccHHHHH
Confidence 2233344566788888887 444443 11122222222222 2344678999999999999998 8 8888888
Q ss_pred HHHHHhhccc
Q 048364 360 LICDLYTMNE 369 (400)
Q Consensus 360 ~l~~~~~~~g 369 (400)
.+++.....+
T Consensus 480 ~~~~~~~~~~ 489 (577)
T KOG1258|consen 480 ELIRFELIQP 489 (577)
T ss_pred HHHHHHHhCC
Confidence 8888776555
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.058 Score=46.61 Aligned_cols=95 Identities=17% Similarity=0.150 Sum_probs=74.0
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhc-cCC-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHH
Q 048364 287 IQHYGCMVDLFGKAGFLEEAYEVIRTM-RLE-PNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDL 364 (400)
Q Consensus 287 ~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 364 (400)
..++..+.-+|.+.+++..|++...+. ... +|....-.=..+|...|+++.|...|+++++.. | .|..+-..|+.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P-~Nka~~~el~~l 334 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLE-P-SNKAARAELIKL 334 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-C-CcHHHHHHHHHH
Confidence 346777888999999999999888877 333 466666666788999999999999999999999 8 777777777777
Q ss_pred hhcccchHHH-HHHHHHHhc
Q 048364 365 YTMNEKWEGA-ERVRKLMLN 383 (400)
Q Consensus 365 ~~~~g~~~~a-~~~~~~m~~ 383 (400)
-.+...+.+. .++|..|-.
T Consensus 335 ~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 7666665554 667777754
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.42 Score=41.65 Aligned_cols=85 Identities=13% Similarity=0.034 Sum_probs=48.5
Q ss_pred HHhCCChhhHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCC-hhhHHHHHHHHHhcC
Q 048364 226 SAHRGYSEDALSLFEMMQAT---GVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR-IQHYGCMVDLFGKAG 301 (400)
Q Consensus 226 ~~~~~~~~~a~~~~~~m~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 301 (400)
..+.|.+..|.+.|.+.+.. +..|+...|.....+..+.|+.++|+.--+...+ +.+. ...|..-..++.-.+
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYIKALLRRANCHLALE 335 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHHHHHHHHHHHHHHHH
Confidence 45667777777777776653 2344555566666666677777777666655552 2221 122223333455566
Q ss_pred ChHHHHHHHHhc
Q 048364 302 FLEEAYEVIRTM 313 (400)
Q Consensus 302 ~~~~a~~~~~~~ 313 (400)
+|++|.+-|++.
T Consensus 336 ~~e~AV~d~~~a 347 (486)
T KOG0550|consen 336 KWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHH
Confidence 677777666665
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.018 Score=50.85 Aligned_cols=97 Identities=13% Similarity=0.035 Sum_probs=70.2
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCCh----hhHHHHHHHHHhcCChHHHHHHHHhc-cCCccHHHHH
Q 048364 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRI----QHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNVIIWG 323 (400)
Q Consensus 249 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~~~~~ 323 (400)
.+...++.+..+|.+.|++++|...|+...+ +.|+. .+|..+..+|...|+.++|++.+++. ...+. .|.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~--~f~ 147 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL--KFS 147 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch--hHH
Confidence 3567899999999999999999999999884 35654 35899999999999999999999998 43221 222
Q ss_pred HHHH--HHHhcCCHHHHHHHHHHHHHcCC
Q 048364 324 SFLA--ACKEHKQFDMAERVIKQALRMVK 350 (400)
Q Consensus 324 ~l~~--~~~~~~~~~~a~~~~~~~~~~~~ 350 (400)
.+.. .+....+.++..++++.+.+.+.
T Consensus 148 ~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 148 TILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 1111 11122344567777888887774
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.012 Score=44.36 Aligned_cols=54 Identities=15% Similarity=0.102 Sum_probs=22.4
Q ss_pred HHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc
Q 048364 258 LTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313 (400)
Q Consensus 258 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 313 (400)
+..+...|++++|..+.+.+... -+.+...|..+|.+|...|+...|.+.|+++
T Consensus 69 ~~~~~~~~~~~~a~~~~~~~l~~--dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 69 AEALLEAGDYEEALRLLQRALAL--DPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 33344444444444444444421 1223344444444444444444444444433
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.78 Score=43.91 Aligned_cols=97 Identities=9% Similarity=0.024 Sum_probs=50.9
Q ss_pred CHHHHHHHHhhCCC-CC-hhhHHHHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcC
Q 048364 65 SFGFARKLFDELPE-RN-AVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNE 142 (400)
Q Consensus 65 ~~~~a~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 142 (400)
..++....+++-+. |- ...-...+..+.+.+++...++++.. ...+...-.....+....|+.++|.+....+- ..
T Consensus 81 ~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW-~~ 158 (644)
T PRK11619 81 PAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFSPE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELW-LT 158 (644)
T ss_pred CHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhcCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh-cc
Confidence 35555555555442 21 12223334455567777777773322 23344444556667777777777766666664 22
Q ss_pred CCCCCHHHHHHHHHHhhcccch
Q 048364 143 GLTPDQMTIGAVLSGCSHLGSV 164 (400)
Q Consensus 143 ~~~p~~~~~~~ll~~~~~~~~~ 164 (400)
| ......+..++..+.+.|..
T Consensus 159 g-~~~p~~cd~l~~~~~~~g~l 179 (644)
T PRK11619 159 G-KSLPNACDKLFSVWQQSGKQ 179 (644)
T ss_pred C-CCCChHHHHHHHHHHHcCCC
Confidence 2 12234555566666555544
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.52 Score=41.64 Aligned_cols=131 Identities=14% Similarity=0.089 Sum_probs=98.5
Q ss_pred ccHHHHHHHHHhCCChhhHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHH
Q 048364 217 ISWTALICGSAHRGYSEDALSLFEMMQATG-VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295 (400)
Q Consensus 217 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 295 (400)
..|...+..-.+..-.+.|..+|-+..+.| +.++...+++++.-++ .|+...|..+|+.-... ++.++..-+-.+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 346667777777777888999999998888 6677788888887665 67888899999877643 2333333345667
Q ss_pred HHHhcCChHHHHHHHHhc--cCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048364 296 LFGKAGFLEEAYEVIRTM--RLEPN--VIIWGSFLAACKEHKQFDMAERVIKQALRMVKP 351 (400)
Q Consensus 296 ~~~~~g~~~~a~~~~~~~--~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 351 (400)
.+.+.++-+.|..+|+.. .+..+ ...|..+|.--...|+...+..+=+++...- |
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~-p 533 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELV-P 533 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHc-C
Confidence 778889999999999866 33333 5678888888888899988888888888776 5
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.31 Score=48.14 Aligned_cols=77 Identities=13% Similarity=0.125 Sum_probs=46.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCCCccc---HHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 048364 191 LVDMYAKCGFLKYALMVFELMEERNVIS---WTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLV 267 (400)
Q Consensus 191 l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 267 (400)
.+.+|..+|+|.+|..+..++..+-... -..|+.-+...+++-+|-++..+-... | .-.+..+++...+
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~~~ 1042 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLCKAKEW 1042 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHhhHhHH
Confidence 4556667777777777776666532222 256777778888888888877665432 1 2233345555566
Q ss_pred hhHHHHHH
Q 048364 268 DEGRKYFK 275 (400)
Q Consensus 268 ~~a~~~~~ 275 (400)
++|..+-.
T Consensus 1043 ~eAlrva~ 1050 (1265)
T KOG1920|consen 1043 EEALRVAS 1050 (1265)
T ss_pred HHHHHHHH
Confidence 66655443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.1 Score=39.83 Aligned_cols=130 Identities=13% Similarity=0.131 Sum_probs=68.3
Q ss_pred hHHHHhCCCCCCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHHHhCCHHHHHHHHhhCCCCChhh
Q 048364 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARKLFDELPERNAVT 83 (400)
Q Consensus 4 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~ 83 (400)
+.-+.+.|++|+...|..+++.+.+.|++....+++ +.++-+|.......+-.+ .+....+.++--+|..+=...
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll----q~~Vi~DSk~lA~~LLs~-~~~~~~~~Ql~lDMLkRL~~~ 91 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL----QYHVIPDSKPLACQLLSL-GNQYPPAYQLGLDMLKRLGTA 91 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----hhcccCCcHHHHHHHHHh-HccChHHHHHHHHHHHHhhhh
Confidence 344455677888788888888888777765544443 555444443333222222 122222333333333222234
Q ss_pred HHHHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcchHHHHHHHH
Q 048364 84 WNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREM 138 (400)
Q Consensus 84 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 138 (400)
+..++..+...|++-+|+++.+....-+...-..++.+-.+.++..--..+|+-.
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5556666777777777777776654333344445555555555555444444443
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.0032 Score=33.67 Aligned_cols=32 Identities=25% Similarity=0.490 Sum_probs=28.6
Q ss_pred HHHHHHcCCCCCCchHHHHHHHHhhcccchHHHH
Q 048364 342 IKQALRMVKPENDGGVFTLICDLYTMNEKWEGAE 375 (400)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 375 (400)
+++.++.. | .++.+|..++.+|...|++++|+
T Consensus 2 y~kAie~~-P-~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-P-NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-C-CCHHHHHHHHHHHHHCcCHHhhc
Confidence 67888888 8 99999999999999999999886
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.36 Score=44.33 Aligned_cols=163 Identities=12% Similarity=0.076 Sum_probs=108.7
Q ss_pred cHHHHHHHHHhCCChhhHHHHHHHHHHCC-CCCC-----HHHHHHHHHHHHh----cCChhhHHHHHHHhhhhcCCCCCh
Q 048364 218 SWTALICGSAHRGYSEDALSLFEMMQATG-VKPN-----EMTFTGVLTACVH----TGLVDEGRKYFKMIDEEYDLEPRI 287 (400)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~-----~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 287 (400)
....+++...=.|+-+.+++.+.+..+.+ +.-. ...|..++..++. ....+.|.++++.+.++ -|+.
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s 266 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNS 266 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCc
Confidence 34455555666778888888777765532 2211 1234444444433 45678899999999864 4665
Q ss_pred hhHHH-HHHHHHhcCChHHHHHHHHhc-cCC-----ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHH
Q 048364 288 QHYGC-MVDLFGKAGFLEEAYEVIRTM-RLE-----PNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360 (400)
Q Consensus 288 ~~~~~-l~~~~~~~g~~~~a~~~~~~~-~~~-----p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 360 (400)
..|.. -.+.+...|++++|.+.|++. ... .....+--+...+.-.+++++|...+.++.+.. . .+..+|..
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~-WSka~Y~Y 344 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-K-WSKAFYAY 344 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-c-cHHHHHHH
Confidence 55543 355677899999999999976 111 123445566677888999999999999999987 5 45555555
Q ss_pred HHHH-hhcccch-------HHHHHHHHHHhccc
Q 048364 361 ICDL-YTMNEKW-------EGAERVRKLMLNQN 385 (400)
Q Consensus 361 l~~~-~~~~g~~-------~~a~~~~~~m~~~~ 385 (400)
+..+ +...|+. ++|.+++.+.....
T Consensus 345 ~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 345 LAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 5444 4567877 88889988887543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.064 Score=45.61 Aligned_cols=164 Identities=12% Similarity=0.051 Sum_probs=94.6
Q ss_pred cHHHHHHHHHhCCChhhHHHHHHHHHHC-CCCCC---HHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCC----CChhh
Q 048364 218 SWTALICGSAHRGYSEDALSLFEMMQAT-GVKPN---EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLE----PRIQH 289 (400)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~ 289 (400)
.|..+..++.+..++.+++.+-+.-... |..|. .....++..++...+.++++.+.|+...+-..-. ....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 4445555555555555555544332221 22221 1233445666677777888887777666321111 12456
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhc-------cCCccHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----C
Q 048364 290 YGCMVDLFGKAGFLEEAYEVIRTM-------RLEPNVIIW-----GSFLAACKEHKQFDMAERVIKQALRMVKPE----N 353 (400)
Q Consensus 290 ~~~l~~~~~~~g~~~~a~~~~~~~-------~~~p~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~ 353 (400)
+..|...|.+..|+++|.-+..+. ++..-..-| -.+..++...|+..+|.+..++..+..... .
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 778888888888888876666554 322211222 334456777888888888887776644311 3
Q ss_pred CchHHHHHHHHhhcccchHHHHHHHHHH
Q 048364 354 DGGVFTLICDLYTMNEKWEGAERVRKLM 381 (400)
Q Consensus 354 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m 381 (400)
.......+.+.|...|+.+.|+.-++..
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 3445556777788888888877666654
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.033 Score=48.11 Aligned_cols=63 Identities=13% Similarity=0.052 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 319 VIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 319 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
..+++.+.-+|.+.+++..|+...++.+..+ | ++......-..++...|+++.|+..|+++++
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~-~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-P-NNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-C-CchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 3567888889999999999999999999999 8 9999999999999999999999999999986
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.23 Score=41.98 Aligned_cols=152 Identities=7% Similarity=0.008 Sum_probs=68.5
Q ss_pred hCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHH----HHHHHHhcCCh
Q 048364 228 HRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGC----MVDLFGKAGFL 303 (400)
Q Consensus 228 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~g~~ 303 (400)
-.|+..+|...++++.+. .+.|...+...=.+|.-.|+.+.-...++++.. ...++...|.. +.-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 345555555555555544 233444455455555555555555555555553 22333333222 22233455555
Q ss_pred HHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCCchHHHHHHHHhhcccchHHHHHHHH
Q 048364 304 EEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKP--ENDGGVFTLICDLYTMNEKWEGAERVRK 379 (400)
Q Consensus 304 ~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 379 (400)
++|++.-++. .+.| |...-.+....+-..|++.++.++..+-...-.. -.-..-|......+...+.++.|+++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 5555555554 3333 3444444445555555555555554433221100 0011122233334445555555555555
Q ss_pred HHh
Q 048364 380 LML 382 (400)
Q Consensus 380 ~m~ 382 (400)
+=+
T Consensus 272 ~ei 274 (491)
T KOG2610|consen 272 REI 274 (491)
T ss_pred HHH
Confidence 433
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.35 Score=35.70 Aligned_cols=52 Identities=21% Similarity=0.216 Sum_probs=24.4
Q ss_pred HhcCChhhHHHHHHHhhhhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhc
Q 048364 262 VHTGLVDEGRKYFKMIDEEYDLEP-RIQHYGCMVDLFGKAGFLEEAYEVIRTM 313 (400)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 313 (400)
.+.|++++|.+.|+.+..++...+ ....--.++.+|.+.+++++|...+++.
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rF 73 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRF 73 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 344555555555555554332222 1223334455555555555555555544
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.26 Score=37.31 Aligned_cols=86 Identities=8% Similarity=-0.021 Sum_probs=52.3
Q ss_pred HHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChH
Q 048364 225 GSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLE 304 (400)
Q Consensus 225 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 304 (400)
-+...|++++|..+|+-+.-.+. -+..-+..|..++-..+++++|...|.....- + ..|+..+-....+|...|+.+
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHhCCHH
Confidence 34566777777777776655432 24444555666666667777777777655521 1 223333444667777777777
Q ss_pred HHHHHHHhc
Q 048364 305 EAYEVIRTM 313 (400)
Q Consensus 305 ~a~~~~~~~ 313 (400)
.|...|+..
T Consensus 123 ~A~~~f~~a 131 (165)
T PRK15331 123 KARQCFELV 131 (165)
T ss_pred HHHHHHHHH
Confidence 777777766
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.15 Score=41.79 Aligned_cols=97 Identities=14% Similarity=0.132 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhc----cCCc-cHHHHHHHH
Q 048364 253 TFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP-RIQHYGCMVDLFGKAGFLEEAYEVIRTM----RLEP-NVIIWGSFL 326 (400)
Q Consensus 253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~p-~~~~~~~l~ 326 (400)
.|+.-+.. .+.|++..|.+-|....+++.-.+ ....+--|..++...|++++|..+|..+ +-.| -...+--|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 45555443 345667777777776665321111 1233444677777777777777777666 2122 224455566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCC
Q 048364 327 AACKEHKQFDMAERVIKQALRMVKP 351 (400)
Q Consensus 327 ~~~~~~~~~~~a~~~~~~~~~~~~~ 351 (400)
.+..+.|+.++|...|+++.+.- |
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~Y-P 246 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRY-P 246 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHC-C
Confidence 66677777777777777777776 5
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.39 Score=43.53 Aligned_cols=156 Identities=9% Similarity=-0.014 Sum_probs=83.8
Q ss_pred hcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCCCChhhHHHHHHHHHcCCChHHHHHHH
Q 048364 26 CTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFF 104 (400)
Q Consensus 26 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 104 (400)
..-.|+++.+.++.+.-.-. +.......+.++..+ +.|-.+.|+++-++- ..-.....+.|+++.|.++.
T Consensus 271 av~~~d~~~v~~~i~~~~ll-~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~--------~~rFeLAl~lg~L~~A~~~a 341 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLL-PNIPKDQGQSIARFLEKKGYPELALQFVTDP--------DHRFELALQLGNLDIALEIA 341 (443)
T ss_dssp HHHTT-HHH-----HHHHTG-GG--HHHHHHHHHHHHHTT-HHHHHHHSS-H--------HHHHHHHHHCT-HHHHHHHC
T ss_pred HHHcCChhhhhhhhhhhhhc-ccCChhHHHHHHHHHHHCCCHHHHHhhcCCh--------HHHhHHHHhcCCHHHHHHHH
Confidence 34456777766655311100 111233466777777 888888888875432 23445567788888888887
Q ss_pred hhCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccch
Q 048364 105 ERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELN 184 (400)
Q Consensus 105 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 184 (400)
+... +...|..|.....+.|+++-|.+.|.+.. -+..++-.|.-.|+.+. -.++.......|.
T Consensus 342 ~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~----------d~~~L~lLy~~~g~~~~--L~kl~~~a~~~~~--- 404 (443)
T PF04053_consen 342 KELD--DPEKWKQLGDEALRQGNIELAEECYQKAK----------DFSGLLLLYSSTGDREK--LSKLAKIAEERGD--- 404 (443)
T ss_dssp CCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHH--HHHHHHHHHHTT----
T ss_pred HhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhc----------CccccHHHHHHhCCHHH--HHHHHHHHHHccC---
Confidence 7665 56688888888888888888888887765 23444445555555554 3334333333331
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHh
Q 048364 185 EQIATILVDMYAKCGFLKYALMVFEL 210 (400)
Q Consensus 185 ~~~~~~l~~~~~~~g~~~~A~~~~~~ 210 (400)
++....++.-.|+.++..+++.+
T Consensus 405 ---~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 405 ---INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp ---HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred ---HHHHHHHHHHcCCHHHHHHHHHH
Confidence 22333334444555555554433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.19 Score=42.88 Aligned_cols=164 Identities=10% Similarity=0.040 Sum_probs=92.4
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCH---HHHHHHHHHhhcccchhhhhhhhhhhHHHhcc-----ccch
Q 048364 113 ASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQ---MTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE-----WELN 184 (400)
Q Consensus 113 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~---~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~ 184 (400)
.+|..+.+++-+.-++.+++.+-+.-....|..|.. ....++-.++...+.++. +.+.|+...+.- ....
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~--~Lesfe~A~~~A~~~~D~~LE 161 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQK--ALESFEKALRYAHNNDDAMLE 161 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHH--HHHHHHHHHHHhhccCCceee
Confidence 355556666666666666666665554344444421 123334555555556666 555555544321 1123
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhccC-------CCcc------cHHHHHHHHHhCCChhhHHHHHHHHHH----CCC
Q 048364 185 EQIATILVDMYAKCGFLKYALMVFELMEE-------RNVI------SWTALICGSAHRGYSEDALSLFEMMQA----TGV 247 (400)
Q Consensus 185 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~------~~~~l~~~~~~~~~~~~a~~~~~~m~~----~~~ 247 (400)
..++..|...|.+..|+++|.-+..+..+ .|.. ....|.-++...|...+|.+.-++..+ .|-
T Consensus 162 lqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gd 241 (518)
T KOG1941|consen 162 LQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGD 241 (518)
T ss_pred eehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCC
Confidence 45677788888888888877655544432 2221 122344556677777777776666433 332
Q ss_pred CC-CHHHHHHHHHHHHhcCChhhHHHHHHHhh
Q 048364 248 KP-NEMTFTGVLTACVHTGLVDEGRKYFKMID 278 (400)
Q Consensus 248 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 278 (400)
+| .......+.+.|...|+.+.|+.-|+...
T Consensus 242 ra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 242 RALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred hHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 22 22344566677778888888877777654
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.15 Score=41.91 Aligned_cols=86 Identities=13% Similarity=0.136 Sum_probs=45.5
Q ss_pred hCCChhhHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCC-hhhHHHHHHHHHhcCChH
Q 048364 228 HRGYSEDALSLFEMMQATGV--KPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR-IQHYGCMVDLFGKAGFLE 304 (400)
Q Consensus 228 ~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 304 (400)
+.|++..|...|...++... .-....+-.|..++...|++++|..+|..+.+.++-.|. +..+--|..+..+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 44556666666665555421 111223344555666666666666666666554433332 244555555566666666
Q ss_pred HHHHHHHhc
Q 048364 305 EAYEVIRTM 313 (400)
Q Consensus 305 ~a~~~~~~~ 313 (400)
+|..+|++.
T Consensus 233 ~A~atl~qv 241 (262)
T COG1729 233 EACATLQQV 241 (262)
T ss_pred HHHHHHHHH
Confidence 666666655
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.37 Score=36.63 Aligned_cols=124 Identities=15% Similarity=0.119 Sum_probs=71.7
Q ss_pred HHhCCChhhHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHH--HHHHhcCC
Q 048364 226 SAHRGYSEDALSLFEMMQATGVKPNE-MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMV--DLFGKAGF 302 (400)
Q Consensus 226 ~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~ 302 (400)
+.+.+..++|+.-|.++.+.|...=+ ....-......+.|+...|...|+++-+...++.-..-...|= -.+...|-
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 45667788888888888877643211 1112223345667888888888888875422211111111121 13456777
Q ss_pred hHHHHHHHHhc--cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 303 LEEAYEVIRTM--RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 303 ~~~a~~~~~~~--~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
+++.....+-+ .-.| -...-..|.-+-.+.|++.+|...|..+..-.
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 77777777766 1122 22234555666677888888888888777643
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.32 Score=44.09 Aligned_cols=157 Identities=12% Similarity=0.022 Sum_probs=101.4
Q ss_pred HHHHhcCCHHHHHHHHH--hcc-CCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhh
Q 048364 193 DMYAKCGFLKYALMVFE--LME-ERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDE 269 (400)
Q Consensus 193 ~~~~~~g~~~~A~~~~~--~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 269 (400)
....-.|+++.+.+... .+. .-+....+.++.-+.+.|.++.|+.+-.+ ..+ -.....+.|+++.
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~~---rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTD---------PDH---RFELALQLGNLDI 336 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS----------HHH---HHHHHHHCT-HHH
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCC---------hHH---HhHHHHhcCCHHH
Confidence 34456788888666654 222 11244577888888899999999887533 221 2334467899998
Q ss_pred HHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 270 GRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 270 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
|.++.+.. ++...|..|.+...++|+++-|++.|++.+ -|..|+-.|.-.|+.+...++.+.....+
T Consensus 337 A~~~a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 337 ALEIAKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKAK------DFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHCCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc------CccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 87765443 366789999999999999999999999885 35667777888899988888888887777
Q ss_pred CCCCCchHHHHHHHHhhcccchHHHHHHHHHH
Q 048364 350 KPENDGGVFTLICDLYTMNEKWEGAERVRKLM 381 (400)
Q Consensus 350 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 381 (400)
- ++....++.-.|+.++..+++.+-
T Consensus 404 -~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 404 -D------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp --------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred -C------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 2 234444555667888877776653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.98 Score=38.37 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=12.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 326 LAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 326 ~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
++.+.+.++.+.+.+.+.+|+...
T Consensus 128 l~il~~~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 128 LEILLKSFDEEEYEEILMRMIRSV 151 (278)
T ss_pred HHHHhccCChhHHHHHHHHHHHhc
Confidence 344444555555555555555544
|
It is also involved in sporulation []. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.35 Score=35.68 Aligned_cols=74 Identities=12% Similarity=0.078 Sum_probs=55.0
Q ss_pred HHHHHHHhcCChHHHHHHHHhc--c--CCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhh
Q 048364 292 CMVDLFGKAGFLEEAYEVIRTM--R--LEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYT 366 (400)
Q Consensus 292 ~l~~~~~~~g~~~~a~~~~~~~--~--~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 366 (400)
.-.....+.|++++|.+.|+.+ . ..| ....--.++.+|.+.+++++|...+++.+++. |...-.-|.....+++
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh-P~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH-PTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCCCccHHHHHHHHH
Confidence 3455567899999999999999 2 122 33456678899999999999999999999999 7444444555555543
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.98 Score=37.72 Aligned_cols=149 Identities=11% Similarity=0.064 Sum_probs=97.9
Q ss_pred HHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCCh
Q 048364 224 CGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFL 303 (400)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 303 (400)
......|+..+|..+|+........ +...-..+..++...|+.+.|..++..+..+ --.........-+..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcC
Confidence 3456778888888888887765322 3455667778888888888888888877642 1111122223345556666666
Q ss_pred HHHHHHHHhccCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHH
Q 048364 304 EEAYEVIRTMRLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGA 374 (400)
Q Consensus 304 ~~a~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 374 (400)
.+...+-++..-.| |...--.+...+...|+.+.|.+.+-.+++.+.--.+...-..++..+...|.-+.+
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHH
Confidence 66666666664456 566666777888888899988888877777654335667777777777776644433
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.68 E-value=2.7 Score=42.13 Aligned_cols=90 Identities=11% Similarity=0.154 Sum_probs=56.0
Q ss_pred CCCHHHHHHHH----HHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhccCCccHH--H
Q 048364 248 KPNEMTFTGVL----TACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVI--I 321 (400)
Q Consensus 248 ~p~~~~~~~l~----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~~~--~ 321 (400)
.|+...+..+. ..+.+...+++|.-.|+..-+ ..--+.+|..+|+|.+|+.+...+...-+.. +
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk----------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~ 1001 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK----------LEKALKAYKECGDWREALSLAAQLSEGKDELVIL 1001 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc----------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHH
Confidence 45555544444 444556777777777765542 1235667778888888888877774333332 2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048364 322 WGSFLAACKEHKQFDMAERVIKQALR 347 (400)
Q Consensus 322 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (400)
-..|+.-+..+++.-+|.+++.+...
T Consensus 1002 a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1002 AEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHHHHHHHcccchhHHHHHHHHhc
Confidence 35667777777887777777776643
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.67 Score=34.53 Aligned_cols=128 Identities=16% Similarity=0.160 Sum_probs=88.2
Q ss_pred chhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCCCChhhHHHHHHHHHcC
Q 048364 16 SFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKS 94 (400)
Q Consensus 16 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 94 (400)
......++..+...+.+.....+++.+...+. .+...++.++..| +. +.+.....++. ..+......++..|.+.
T Consensus 7 ~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~-~~~~ll~~l~~--~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 7 PIDVSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKY-DPQKEIERLDN--KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred cCCHHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHH-CHHHHHHHHHh--ccccCCHHHHHHHHHHc
Confidence 33456778888888899999999999988874 5777899999999 55 34455555553 23445566688888888
Q ss_pred CChHHHHHHHhhCCCCChhhHHHHHHHHHhc-CCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhh
Q 048364 95 GNVCEARDFFERMPLRNVASWSAMIAAYLNA-GAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCS 159 (400)
Q Consensus 95 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~ 159 (400)
+.++++..++.++.. |...+..+... ++++.|.+++.+- -+...|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~-----~~~Al~~~l~~~~d~~~a~~~~~~~-------~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGN-----FKDAIVTLIEHLGNYEKAIEYFVKQ-------NNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcC-----HHHHHHHHHHcccCHHHHHHHHHhC-------CCHHHHHHHHHHHH
Confidence 888888888888753 22334444444 7788888877652 24456666666554
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.42 E-value=1.2 Score=40.97 Aligned_cols=159 Identities=16% Similarity=0.055 Sum_probs=104.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccC-CCc---------ccHHHHHHHHHh----CCChhhHHHHHHHHHHCCCCCCHHH
Q 048364 188 ATILVDMYAKCGFLKYALMVFELMEE-RNV---------ISWTALICGSAH----RGYSEDALSLFEMMQATGVKPNEMT 253 (400)
Q Consensus 188 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~---------~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~ 253 (400)
+..+++...=.||-+.+.+.+....+ ++. ..|+..+..++. ....+.|.++++.+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 34556666677899999998887765 222 235555555544 35668899999999876 566655
Q ss_pred HHHH-HHHHHhcCChhhHHHHHHHhhhh-cCCC-CChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHH
Q 048364 254 FTGV-LTACVHTGLVDEGRKYFKMIDEE-YDLE-PRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAA 328 (400)
Q Consensus 254 ~~~l-~~~~~~~~~~~~a~~~~~~~~~~-~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~ 328 (400)
|... .+.+...|++++|.+.|+..... ...+ .....+--+.-++.-..++++|.+.|..+ .... +..+|.-+..+
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 5433 34566789999999999976531 1111 12334555666788899999999999999 3223 33444444333
Q ss_pred -HHhcCCH-------HHHHHHHHHHHHc
Q 048364 329 -CKEHKQF-------DMAERVIKQALRM 348 (400)
Q Consensus 329 -~~~~~~~-------~~a~~~~~~~~~~ 348 (400)
+...|+. ++|..++.++...
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 3467777 8888888877653
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.96 Score=36.62 Aligned_cols=114 Identities=10% Similarity=0.068 Sum_probs=73.6
Q ss_pred hcCChhhHHHHHHHhhhhcC----CCCChhhHHHHHHHHHhcCChHHHHHHHHhc-c------CCccH-HHHHHHHHHHH
Q 048364 263 HTGLVDEGRKYFKMIDEEYD----LEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-R------LEPNV-IIWGSFLAACK 330 (400)
Q Consensus 263 ~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~------~~p~~-~~~~~l~~~~~ 330 (400)
+.-++++|.++|++...-.. .+.-...+....+.+.+...+++|-..+.+- + -.|+. ..|...|-.+.
T Consensus 122 env~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L 201 (308)
T KOG1585|consen 122 ENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYL 201 (308)
T ss_pred hcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHh
Confidence 44566777777766543111 1112344666777888888998887777665 1 12222 24556666777
Q ss_pred hcCCHHHHHHHHHHHHHcCC---CCCCchHHHHHHHHhhcccchHHHHHHH
Q 048364 331 EHKQFDMAERVIKQALRMVK---PENDGGVFTLICDLYTMNEKWEGAERVR 378 (400)
Q Consensus 331 ~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 378 (400)
...++..|...+++--..+. + .+..+...|+.+|- .|+.+++..++
T Consensus 202 ~~~Dyv~aekc~r~~~qip~f~~s-ed~r~lenLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 202 YAHDYVQAEKCYRDCSQIPAFLKS-EDSRSLENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred hHHHHHHHHHHhcchhcCccccCh-HHHHHHHHHHHHhc-cCCHHHHHHHH
Confidence 78899999999998655442 4 67788888888875 56776665544
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.36 E-value=1.3 Score=36.32 Aligned_cols=68 Identities=26% Similarity=0.336 Sum_probs=42.6
Q ss_pred HHcCCChHHHHHHHhhCCCC------ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhh
Q 048364 91 YSKSGNVCEARDFFERMPLR------NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCS 159 (400)
Q Consensus 91 ~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~ 159 (400)
-.+.|++++|.+.|+.+... ...+--.++-++-+.++++.|+..+++..+..+-.||. .|..-|.+.+
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~YlkgLs 117 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLKGLS 117 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHHHHH
Confidence 34667777777777776522 22344456667778888888888888887555555553 3333444433
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.14 Score=42.09 Aligned_cols=98 Identities=19% Similarity=0.221 Sum_probs=67.1
Q ss_pred HHHHHhcc--CCCcccHHHHHHHHHh-----CCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC------------
Q 048364 205 LMVFELME--ERNVISWTALICGSAH-----RGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTG------------ 265 (400)
Q Consensus 205 ~~~~~~~~--~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~------------ 265 (400)
++.|.... +.|-.+|-+.+..+.. .+..+=....++.|.+.|+.-|..+|+.|+..+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 44455554 4566677777776654 3556666677788888899889999998888765422
Q ss_pred ----ChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCCh
Q 048364 266 ----LVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFL 303 (400)
Q Consensus 266 ----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 303 (400)
+-+-+++++++|. .+|+.||-.+-..|+.++.+.+-.
T Consensus 134 HYP~QQ~C~I~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQME-WHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hCchhhhHHHHHHHHHH-HcCCCCchHHHHHHHHHhcccccc
Confidence 2234667777776 567777777777777777776643
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.32 E-value=1.1 Score=40.44 Aligned_cols=74 Identities=18% Similarity=0.169 Sum_probs=44.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhc-cCCc---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHH
Q 048364 290 YGCMVDLFGKAGFLEEAYEVIRTM-RLEP---NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICD 363 (400)
Q Consensus 290 ~~~l~~~~~~~g~~~~a~~~~~~~-~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 363 (400)
-..+..+.-+.|+.++|.+.++++ ...| +......|+.++...+.+.++..++.+.-+...|+.-...|...+-
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 344566666777777777777777 3223 2335566777777777777777777776554434333444544443
|
The molecular function of this protein is uncertain. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.49 Score=42.23 Aligned_cols=160 Identities=10% Similarity=0.126 Sum_probs=98.2
Q ss_pred ccH--HHHHHHHHhCC-----ChhhHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhc---C------ChhhHHHHHHHhh
Q 048364 217 ISW--TALICGSAHRG-----YSEDALSLFEMMQAT-GVKPN-EMTFTGVLTACVHT---G------LVDEGRKYFKMID 278 (400)
Q Consensus 217 ~~~--~~l~~~~~~~~-----~~~~a~~~~~~m~~~-~~~p~-~~~~~~l~~~~~~~---~------~~~~a~~~~~~~~ 278 (400)
..| ...+.+..... ..+.|+.+|.+.... ...|+ ...|..+..++... | ...+|.+.-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 556 55665554422 346778888888722 24554 35565555554332 1 2334555555555
Q ss_pred hhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCccH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCch
Q 048364 279 EEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNV-IIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGG 356 (400)
Q Consensus 279 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 356 (400)
+ --+.|......+..+..-.++++.|...|++. .+.||. .+|......+.-.|+.++|.+.+++..+.. |..-..
T Consensus 332 e--ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs-P~~~~~ 408 (458)
T PRK11906 332 D--ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLE-PRRRKA 408 (458)
T ss_pred h--cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-chhhHH
Confidence 3 22346677777777777888899999999988 666754 355555556677899999999999999888 622222
Q ss_pred HH-HHHHHHhhcccchHHHHHHHHH
Q 048364 357 VF-TLICDLYTMNEKWEGAERVRKL 380 (400)
Q Consensus 357 ~~-~~l~~~~~~~g~~~~a~~~~~~ 380 (400)
.. ...+..|+.. ..++|++++-+
T Consensus 409 ~~~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 409 VVIKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHHcCC-chhhhHHHHhh
Confidence 22 2333356655 45777776643
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.15 Score=36.68 Aligned_cols=88 Identities=15% Similarity=0.009 Sum_probs=62.8
Q ss_pred HHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc----cCCc--cHHHHHHHHHHHHhcC
Q 048364 260 ACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM----RLEP--NVIIWGSFLAACKEHK 333 (400)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~p--~~~~~~~l~~~~~~~~ 333 (400)
+++..|+.+.|++.|.+... -.+.....||.-.+++.-+|+.++|++-+++. |-+. --..|..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 56778888888888888773 33446778888888888888888888877776 3121 1123333444567788
Q ss_pred CHHHHHHHHHHHHHcC
Q 048364 334 QFDMAERVIKQALRMV 349 (400)
Q Consensus 334 ~~~~a~~~~~~~~~~~ 349 (400)
+.+.|..-|+..-+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 8888888888888888
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.24 E-value=1.5 Score=36.62 Aligned_cols=121 Identities=12% Similarity=0.059 Sum_probs=86.4
Q ss_pred HHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhccCCccHHHHH---HHHHHHHhcCCH
Q 048364 259 TACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWG---SFLAACKEHKQF 335 (400)
Q Consensus 259 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~~~~~~---~l~~~~~~~~~~ 335 (400)
......|++.+|...|+..... .+-+...--.++.+|...|+.+.|..++..+...-...-+. .-+..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 3456789999999999988853 23345666778999999999999999999983232222222 234455555555
Q ss_pred HHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhcc
Q 048364 336 DMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 336 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
.+...+-+ -...+ | .|...-..+...+...|+.+.|.+.+=.+.+.
T Consensus 220 ~~~~~l~~-~~aad-P-dd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 220 PEIQDLQR-RLAAD-P-DDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CCHHHHHH-HHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55444433 33455 7 89999999999999999999999876666543
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.23 E-value=1.3 Score=35.86 Aligned_cols=145 Identities=16% Similarity=0.154 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHC---CC--CCCHHHHHHHHHH
Q 048364 186 QIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQAT---GV--KPNEMTFTGVLTA 260 (400)
Q Consensus 186 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~--~p~~~~~~~l~~~ 260 (400)
..++.-...|..+|..+-|-..+++.-+ ..+.-++++|+.+|++.... +- +--...+..+-+.
T Consensus 92 dl~eKAs~lY~E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~ 159 (308)
T KOG1585|consen 92 DLYEKASELYVECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRV 159 (308)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhH
Confidence 3444555556666665555554444321 23445677777777765432 10 0111234555566
Q ss_pred HHhcCChhhHHHHHHHhhh---hcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHhc----c-C-CccHHHHHHHHHHHH
Q 048364 261 CVHTGLVDEGRKYFKMIDE---EYDLEPR-IQHYGCMVDLFGKAGFLEEAYEVIRTM----R-L-EPNVIIWGSFLAACK 330 (400)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~---~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~----~-~-~p~~~~~~~l~~~~~ 330 (400)
+.+...+++|-..+.+-.. +..--++ ...|...|-.|.-..++..|...+++- + . .-+..+...|+.+|
T Consensus 160 lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay- 238 (308)
T KOG1585|consen 160 LVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY- 238 (308)
T ss_pred hhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-
Confidence 7777888877766654321 1111122 234556666777788999999999984 1 1 22667888899888
Q ss_pred hcCCHHHHHHHHH
Q 048364 331 EHKQFDMAERVIK 343 (400)
Q Consensus 331 ~~~~~~~a~~~~~ 343 (400)
..|+.+++..++.
T Consensus 239 d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 239 DEGDIEEIKKVLS 251 (308)
T ss_pred ccCCHHHHHHHHc
Confidence 5678888655543
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.98 Score=33.66 Aligned_cols=129 Identities=13% Similarity=0.079 Sum_probs=78.3
Q ss_pred ccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHH
Q 048364 217 ISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDL 296 (400)
Q Consensus 217 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 296 (400)
.....++..+...+.+......++.+...+. .+....+.++..|++.+. .+....++. ..+......+++.
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~-------~~~~yd~~~~~~~ 78 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN-------KSNHYDIEKVGKL 78 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh-------ccccCCHHHHHHH
Confidence 3445566777777778888888888777653 566677777777776532 333333331 1223334446777
Q ss_pred HHhcCChHHHHHHHHhccCCccHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhc
Q 048364 297 FGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH-KQFDMAERVIKQALRMVKPENDGGVFTLICDLYTM 367 (400)
Q Consensus 297 ~~~~g~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 367 (400)
|.+.+.++++.-++.++|.. ...+..+... ++++.|.+++.+ . .++..|..++..+..
T Consensus 79 c~~~~l~~~~~~l~~k~~~~------~~Al~~~l~~~~d~~~a~~~~~~------~-~~~~lw~~~~~~~l~ 137 (140)
T smart00299 79 CEKAKLYEEAVELYKKDGNF------KDAIVTLIEHLGNYEKAIEYFVK------Q-NNPELWAEVLKALLD 137 (140)
T ss_pred HHHcCcHHHHHHHHHhhcCH------HHHHHHHHHcccCHHHHHHHHHh------C-CCHHHHHHHHHHHHc
Confidence 77778888888888877532 2223333333 677777777664 1 345667766665543
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=95.06 E-value=1.9 Score=36.64 Aligned_cols=82 Identities=11% Similarity=0.052 Sum_probs=41.2
Q ss_pred CCCChhhHHHHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHHhcCCc----chHHHHHHHHHhcCCCCCCHHHHH
Q 048364 77 PERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY----DPGLKLFREMISNEGLTPDQMTIG 152 (400)
Q Consensus 77 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~a~~~~~~m~~~~~~~p~~~~~~ 152 (400)
..+|.......+..+...|..+-...+..-+..+|...-...+.++.+.|+. +++...+..+. . -.|+...-.
T Consensus 33 ~d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~-~--~D~d~~VR~ 109 (280)
T PRK09687 33 DDHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLA-L--EDKSACVRA 109 (280)
T ss_pred hCCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHH-h--cCCCHHHHH
Confidence 3455555555666666655533333333333355555555666666666653 34566665553 1 134444444
Q ss_pred HHHHHhhcc
Q 048364 153 AVLSGCSHL 161 (400)
Q Consensus 153 ~ll~~~~~~ 161 (400)
..+.++...
T Consensus 110 ~A~~aLG~~ 118 (280)
T PRK09687 110 SAINATGHR 118 (280)
T ss_pred HHHHHHhcc
Confidence 444444433
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.05 E-value=1.5 Score=35.48 Aligned_cols=165 Identities=17% Similarity=0.091 Sum_probs=107.1
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHhccC--CCc-ccHHHHHH-HHHhCCChhhHHHHHHHHHHCCC--CCCHHHHHHH
Q 048364 184 NEQIATILVDMYAKCGFLKYALMVFELMEE--RNV-ISWTALIC-GSAHRGYSEDALSLFEMMQATGV--KPNEMTFTGV 257 (400)
Q Consensus 184 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~l~~-~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~l 257 (400)
....+......+...+++..+...+..... ++. ........ .+...|+++.|...+.+...... ......+...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 173 (291)
T COG0457 94 LAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLAL 173 (291)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHh
Confidence 344445555566666777777777777665 222 22333333 67788888888888888755221 1123344444
Q ss_pred HHHHHhcCChhhHHHHHHHhhhhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCcc-HHHHHHHHHHHHhcCC
Q 048364 258 LTACVHTGLVDEGRKYFKMIDEEYDLEP-RIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPN-VIIWGSFLAACKEHKQ 334 (400)
Q Consensus 258 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~ 334 (400)
...+...++.+.+...+....+ .... ....+..+...+...++++.|...+... ...|+ ...+..+...+...+.
T Consensus 174 ~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (291)
T COG0457 174 GALLEALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGR 251 (291)
T ss_pred hhHHHHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCC
Confidence 4446677888888888888874 2233 3566777788888888888888888887 44554 3444444445556677
Q ss_pred HHHHHHHHHHHHHcCCC
Q 048364 335 FDMAERVIKQALRMVKP 351 (400)
Q Consensus 335 ~~~a~~~~~~~~~~~~~ 351 (400)
.+.+...+.+..... +
T Consensus 252 ~~~~~~~~~~~~~~~-~ 267 (291)
T COG0457 252 YEEALEALEKALELD-P 267 (291)
T ss_pred HHHHHHHHHHHHHhC-c
Confidence 888888888888877 5
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.8 Score=41.17 Aligned_cols=152 Identities=7% Similarity=0.063 Sum_probs=88.2
Q ss_pred HHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcC
Q 048364 222 LICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301 (400)
Q Consensus 222 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 301 (400)
+|.-..+..++..-++.-++..+. .|+-.+.-+++ +-.......++++++++..+. + ...+..- ......|
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei--~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-g----E~~lg~s-~~~~~~g 244 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEI--NPDCADAYILL-AEEEASTIVEAEELLRQAVKA-G----EASLGKS-QFLQHHG 244 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh--hhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-H----HHhhchh-hhhhccc
Confidence 333344455555555555555543 34433222222 223345678888888877742 1 0111000 0000111
Q ss_pred ChHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CCchHHHHHHHHhhcccchHHHHHHHHH
Q 048364 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPE-NDGGVFTLICDLYTMNEKWEGAERVRKL 380 (400)
Q Consensus 302 ~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 380 (400)
. ..+.+..-...|-..+-..+..++.+.|+.++|++.++++.+.. |. +...+...|+.++...+.+.++..++.+
T Consensus 245 ~---~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 245 H---FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred c---hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 1 11111111222333344557778889999999999999999877 53 3566889999999999999999999998
Q ss_pred Hhcccc
Q 048364 381 MLNQNV 386 (400)
Q Consensus 381 m~~~~~ 386 (400)
-.+...
T Consensus 321 YdDi~l 326 (539)
T PF04184_consen 321 YDDISL 326 (539)
T ss_pred hccccC
Confidence 765444
|
The molecular function of this protein is uncertain. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.88 Score=35.51 Aligned_cols=94 Identities=15% Similarity=0.096 Sum_probs=52.8
Q ss_pred cHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChh------h
Q 048364 218 SWTALICGSAHRGYSEDALSLFEMMQATGVKPNE--MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQ------H 289 (400)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~ 289 (400)
.+..+...|++.|+.+.|.+.|.++.+....|.. ..+..+|+.....+++..+...+.++..-.....|.. +
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4555666677777777777777776665433332 3455566666667777777666665553211111111 1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhc
Q 048364 290 YGCMVDLFGKAGFLEEAYEVIRTM 313 (400)
Q Consensus 290 ~~~l~~~~~~~g~~~~a~~~~~~~ 313 (400)
|..+ .+...+++.+|-+.|-+.
T Consensus 118 ~~gL--~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGL--ANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHH--HHHHhchHHHHHHHHHcc
Confidence 2111 334567777777777666
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.43 Score=40.43 Aligned_cols=116 Identities=14% Similarity=0.096 Sum_probs=94.2
Q ss_pred hcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc--cCCccHHHH----HHHHHHHHhcCCHH
Q 048364 263 HTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM--RLEPNVIIW----GSFLAACKEHKQFD 336 (400)
Q Consensus 263 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~p~~~~~----~~l~~~~~~~~~~~ 336 (400)
..|+..+|-..++++.+ ..+.|...+...=.++.-.|+.+.-...++++ ...||...| ..+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~--d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLD--DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHH--hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 46788888888999986 55678788887888899999999888888888 335665443 33344556899999
Q ss_pred HHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHh
Q 048364 337 MAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLML 382 (400)
Q Consensus 337 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 382 (400)
+|++.-++..+.+ + .+..+...+...+...|++.++.++..+-.
T Consensus 193 dAEk~A~ralqiN-~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te 236 (491)
T KOG2610|consen 193 DAEKQADRALQIN-R-FDCWASHAKAHVLEMNGRHKEGKEFMYKTE 236 (491)
T ss_pred hHHHHHHhhccCC-C-cchHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence 9999999999999 8 899999999999999999999998876544
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=94.91 E-value=2.6 Score=37.53 Aligned_cols=132 Identities=9% Similarity=0.081 Sum_probs=84.2
Q ss_pred cccchhHHHHHHHHHHHHhCcc-cc----hhhhhHHHHHHHhCCHHHHHHHHhhCCCCC-hhhHHHHHHH--HHcCCChH
Q 048364 27 THFNNLTVIHHLHSHILKLGFI-SH----VYVATSLLHEYVVTSFGFARKLFDELPERN-AVTWNTMIKG--YSKSGNVC 98 (400)
Q Consensus 27 ~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~l~~~--~~~~~~~~ 98 (400)
-+.+++.+|..+|.++.+..-. |. ...-+.++++|-.++.+.-...+....+.. ...|-.+..+ +.+.+++.
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~ 96 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYR 96 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHH
Confidence 3678999999999998765321 11 234566777775555555555554444311 3334445444 45788899
Q ss_pred HHHHHHhhCCC-------C-----------ChhhHHHHHHHHHhcCCcchHHHHHHHHHh---cCCCCCCHHHHHHHHHH
Q 048364 99 EARDFFERMPL-------R-----------NVASWSAMIAAYLNAGAYDPGLKLFREMIS---NEGLTPDQMTIGAVLSG 157 (400)
Q Consensus 99 ~a~~~~~~~~~-------~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~---~~~~~p~~~~~~~ll~~ 157 (400)
+|++.+..-.+ + |...=+..+.++...|++.++..+++++.+ .+....+..+|+.++-.
T Consensus 97 kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlm 176 (549)
T PF07079_consen 97 KALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLM 176 (549)
T ss_pred HHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHH
Confidence 99988765431 1 112234567788899999999999988872 12234788888886655
Q ss_pred h
Q 048364 158 C 158 (400)
Q Consensus 158 ~ 158 (400)
+
T Consensus 177 l 177 (549)
T PF07079_consen 177 L 177 (549)
T ss_pred H
Confidence 5
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.48 Score=34.16 Aligned_cols=89 Identities=17% Similarity=0.049 Sum_probs=62.3
Q ss_pred HHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCCh--hhHHHHHHHHHhcC
Q 048364 224 CGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRI--QHYGCMVDLFGKAG 301 (400)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g 301 (400)
-++...|+.+.|++.|.+.... .+-....||.-.+++.-.|+.++|..=+++..+-.|-+... ..|..-...|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 3567788888888888887765 33466788888888888888888888888777544433211 22334444667778
Q ss_pred ChHHHHHHHHhc
Q 048364 302 FLEEAYEVIRTM 313 (400)
Q Consensus 302 ~~~~a~~~~~~~ 313 (400)
+-+.|..-|+..
T Consensus 130 ~dd~AR~DFe~A 141 (175)
T KOG4555|consen 130 NDDAARADFEAA 141 (175)
T ss_pred chHHHHHhHHHH
Confidence 888888777765
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.79 E-value=2.8 Score=37.32 Aligned_cols=130 Identities=11% Similarity=0.172 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCccHHHH-HHHHHHH
Q 048364 252 MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNVIIW-GSFLAAC 329 (400)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~~~~-~~l~~~~ 329 (400)
..|...+.+..+..-++.|..+|-++.+..-..+++..+++++..++ .|+..-|..+|+-- ..-||...| +..+.-+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 34666777777888899999999999855226678888898888765 57788899999865 444565554 5566777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHh
Q 048364 330 KEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLML 382 (400)
Q Consensus 330 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 382 (400)
...++-+.|..+|+..+..-....-...|..++..-..-|+...+..+=++|.
T Consensus 477 i~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 477 IRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred HHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 78899999999999666543110125678888888788888877776666554
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.17 Score=42.19 Aligned_cols=60 Identities=13% Similarity=0.178 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048364 288 QHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALR 347 (400)
Q Consensus 288 ~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (400)
.++..++..+...|+++.+.+.++++ ...| +...|..++.+|.+.|+...|+..|+++.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 45566666677777777777777666 4444 566677777777777777777777766655
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=94.71 E-value=2.8 Score=36.98 Aligned_cols=70 Identities=16% Similarity=0.167 Sum_probs=56.4
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C-CCchHHHHHHHHhhcccchHHHHHHHHHHhcccc
Q 048364 317 PNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKP-E-NDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNV 386 (400)
Q Consensus 317 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 386 (400)
....+|..++..+.+.|.++.|...+.++...+.+ . ..+.+...-+......|+..+|...++...+..+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 45568899999999999999999999999886521 0 1567777778888899999999999988887433
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.48 E-value=2.1 Score=34.56 Aligned_cols=195 Identities=19% Similarity=0.152 Sum_probs=141.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhccC-----CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048364 185 EQIATILVDMYAKCGFLKYALMVFELMEE-----RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLT 259 (400)
Q Consensus 185 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 259 (400)
..........+...+++..+...+..... .....+......+...+++..+...+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 45566677778888888888888777652 3445566677777888889999999998887644431 22222333
Q ss_pred -HHHhcCChhhHHHHHHHhhhhcCC--CCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCcc--HHHHHHHHHHHHhcC
Q 048364 260 -ACVHTGLVDEGRKYFKMIDEEYDL--EPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPN--VIIWGSFLAACKEHK 333 (400)
Q Consensus 260 -~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~--~~~~~~l~~~~~~~~ 333 (400)
++...|+++.+...++.... ... ......+......+...++.+.+...+.+. ...|+ ...+..+...+...+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 138 GALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 78899999999999999863 221 123344444555577889999999999988 44444 677888888999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 334 QFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 334 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
+++.+...+....... + .....+..+...+...|.++.+...+.+...
T Consensus 217 ~~~~a~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 217 KYEEALEYYEKALELD-P-DNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cHHHHHHHHHHHHhhC-c-ccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999988 6 4455666666666677778888888777664
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.085 Score=39.59 Aligned_cols=128 Identities=12% Similarity=0.132 Sum_probs=85.2
Q ss_pred HHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCCCChhhHHHHHHHHHcCCChHH
Q 048364 21 HILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCE 99 (400)
Q Consensus 21 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 99 (400)
.+++.+.+.+.+....++++.+...+...+....+.++..| +.++.+...++++.... .-...++..|.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 46777888889999999999999877666788889999999 88877888888874332 444567777778888888
Q ss_pred HHHHHhhCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccc
Q 048364 100 ARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGS 163 (400)
Q Consensus 100 a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~ 163 (400)
|.-++.++...+.. +..+...++++.|.+++.+ .++...|..++..|...+.
T Consensus 89 a~~Ly~~~~~~~~a-----l~i~~~~~~~~~a~e~~~~-------~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 89 AVYLYSKLGNHDEA-----LEILHKLKDYEEAIEYAKK-------VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHCCTTHTTC-----SSTSSSTHCSCCCTTTGGG-------CSSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHcccHHHH-----HHHHHHHccHHHHHHHHHh-------cCcHHHHHHHHHHHHhcCc
Confidence 88887776532111 1113344566666644322 2345677777777665554
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.7 Score=36.08 Aligned_cols=94 Identities=14% Similarity=0.078 Sum_probs=51.6
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhc---cCCc--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHH---
Q 048364 288 QHYGCMVDLFGKAGFLEEAYEVIRTM---RLEP--NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT--- 359 (400)
Q Consensus 288 ~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--- 359 (400)
..+..+...|.+.|+.+.|.+.|.++ ...| -...+-.+|+.....+++..+...+.++...-....+...-+
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 44666777777777777777777776 1112 233455666677777777777777666655431101111111
Q ss_pred -HHHHHhhcccchHHHHHHHHHH
Q 048364 360 -LICDLYTMNEKWEGAERVRKLM 381 (400)
Q Consensus 360 -~l~~~~~~~g~~~~a~~~~~~m 381 (400)
.-+..+...|+|..|-+.|-..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHcc
Confidence 1111234556777776665443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.11 E-value=3.3 Score=39.85 Aligned_cols=141 Identities=13% Similarity=0.086 Sum_probs=72.6
Q ss_pred HHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 048364 193 DMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRK 272 (400)
Q Consensus 193 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 272 (400)
+.+.+.|++++|...|-+...-- --..++.-|....+..+-..+++.+.+.|.. +...-..|+.+|.+.++.++..+
T Consensus 376 d~Ly~Kgdf~~A~~qYI~tI~~l--e~s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~e 452 (933)
T KOG2114|consen 376 DYLYGKGDFDEATDQYIETIGFL--EPSEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTE 452 (933)
T ss_pred HHHHhcCCHHHHHHHHHHHcccC--ChHHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHH
Confidence 33445666666666655443211 1112344445555555556666666666654 44445566667777777666666
Q ss_pred HHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048364 273 YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQA 345 (400)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 345 (400)
+.+... +..+.-| ....+..+.+.+-.++|..+-.+.+. ....... .+-..+++++|.+++..+
T Consensus 453 fI~~~~-~g~~~fd---~e~al~Ilr~snyl~~a~~LA~k~~~--he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 453 FISKCD-KGEWFFD---VETALEILRKSNYLDEAELLATKFKK--HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHhcCC-Ccceeee---HHHHHHHHHHhChHHHHHHHHHHhcc--CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 555444 2111112 23345555555656666555555432 2222222 233456777777777654
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.93 Score=35.35 Aligned_cols=86 Identities=12% Similarity=-0.005 Sum_probs=41.1
Q ss_pred HHHhcCChhhHHHHHHHhhhhcCCCCChhhHH-----HHHHHHHhcCChHHHHHHHHhc-cCCccHHHHHHHHHHHHhcC
Q 048364 260 ACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYG-----CMVDLFGKAGFLEEAYEVIRTM-RLEPNVIIWGSFLAACKEHK 333 (400)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~-~~~p~~~~~~~l~~~~~~~~ 333 (400)
.+...+++++|...++..... |....+. .|.+.....|.+++|+..++.. +-.-.......-.+.+...|
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg 173 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKG 173 (207)
T ss_pred HHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcC
Confidence 345566666666666555421 1111222 2333445556666666666554 11111122233334555666
Q ss_pred CHHHHHHHHHHHHHcC
Q 048364 334 QFDMAERVIKQALRMV 349 (400)
Q Consensus 334 ~~~~a~~~~~~~~~~~ 349 (400)
+-++|..-|++.+..+
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 6666666666665554
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.10 E-value=1.7 Score=33.18 Aligned_cols=127 Identities=17% Similarity=0.086 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHH-----HHHHhCCChhhHHHHHHHHHHCCCCCCHH-HHHHHH
Q 048364 185 EQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALI-----CGSAHRGYSEDALSLFEMMQATGVKPNEM-TFTGVL 258 (400)
Q Consensus 185 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~ 258 (400)
...|..-++ ..+.+..++|+.-|..+.+.+...|-.|. ......|+...|...|++.-.....|... -..-|=
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 334444333 35678889999999999887666665543 34677899999999999987765555433 112221
Q ss_pred --HHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc
Q 048364 259 --TACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313 (400)
Q Consensus 259 --~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 313 (400)
-.+...|.++....-.+-+... +.+.....-..|.-+-.+.|++.+|.+.|..+
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence 2356778888888877777632 33333444566777778999999999999988
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.33 Score=37.82 Aligned_cols=99 Identities=16% Similarity=0.088 Sum_probs=68.5
Q ss_pred HHHhcCChhhHHHHHHHhhhhcCCCCC-----hhhHHHHHHHHHhcCChHHHHHHHHhc-cCCcc-HHHHHHHHHHHHhc
Q 048364 260 ACVHTGLVDEGRKYFKMIDEEYDLEPR-----IQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPN-VIIWGSFLAACKEH 332 (400)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~-~~~~~~l~~~~~~~ 332 (400)
-+...|++++|..-|...... +++. ...|..-..++.+.+.++.|.+-..+. .+.|. ......-..+|-+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 467789999999999988853 3332 234555566788888888888877766 55563 22333345678888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCchHHHHHH
Q 048364 333 KQFDMAERVIKQALRMVKPENDGGVFTLIC 362 (400)
Q Consensus 333 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 362 (400)
.++++|+.-|.++.+.. | ....+-...+
T Consensus 182 ek~eealeDyKki~E~d-P-s~~ear~~i~ 209 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESD-P-SRREAREAIA 209 (271)
T ss_pred hhHHHHHHHHHHHHHhC-c-chHHHHHHHH
Confidence 89999999999999988 7 3334444433
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.14 Score=29.10 Aligned_cols=38 Identities=11% Similarity=-0.010 Sum_probs=28.0
Q ss_pred hhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhh
Q 048364 17 FSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVAT 55 (400)
Q Consensus 17 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 55 (400)
.++..+..++.+.|++++|.++|+++++..+. |...+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~ 39 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWR 39 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHH
Confidence 45777888888889999999999888886543 343443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.92 E-value=1.9 Score=33.02 Aligned_cols=100 Identities=10% Similarity=0.071 Sum_probs=71.6
Q ss_pred HHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCCCChhhHHHHHHHHHcCC--ChHHHHHHHhhCCCCCh
Q 048364 36 HHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSG--NVCEARDFFERMPLRNV 112 (400)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~ 112 (400)
.++.+.+.+.++.|+...+..++..+ +.|++.....++..-.-+|.......+-.+.... -.+-|++++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~---- 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG---- 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh----
Confidence 45566667789999999999999999 9999999888887666555444333332222211 1455666666665
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHH
Q 048364 113 ASWSAMIAAYLNAGAYDPGLKLFREMI 139 (400)
Q Consensus 113 ~~~~~l~~~~~~~g~~~~a~~~~~~m~ 139 (400)
..+..+++.+...|++-+|+++.+...
T Consensus 90 ~~~~~iievLL~~g~vl~ALr~ar~~~ 116 (167)
T PF07035_consen 90 TAYEEIIEVLLSKGQVLEALRYARQYH 116 (167)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 356677888999999999999998764
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.17 Score=27.33 Aligned_cols=23 Identities=9% Similarity=0.151 Sum_probs=10.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 048364 322 WGSFLAACKEHKQFDMAERVIKQ 344 (400)
Q Consensus 322 ~~~l~~~~~~~~~~~~a~~~~~~ 344 (400)
|..|...|.+.|++++|+.++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444455555555555555554
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.89 E-value=3.6 Score=34.97 Aligned_cols=14 Identities=7% Similarity=0.033 Sum_probs=7.5
Q ss_pred hcccchHHHHHHHH
Q 048364 366 TMNEKWEGAERVRK 379 (400)
Q Consensus 366 ~~~g~~~~a~~~~~ 379 (400)
.+.++|++|.+.++
T Consensus 257 ~~~k~y~~A~~w~~ 270 (278)
T PF08631_consen 257 YKAKNYDEAIEWYE 270 (278)
T ss_pred HhhcCHHHHHHHHH
Confidence 34555555555554
|
It is also involved in sporulation []. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.08 Score=28.62 Aligned_cols=27 Identities=15% Similarity=0.203 Sum_probs=23.1
Q ss_pred HHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 357 VFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 357 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
++..|..+|.+.|++++|++++++...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 478899999999999999999999663
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.52 Score=38.92 Aligned_cols=32 Identities=16% Similarity=0.216 Sum_probs=24.4
Q ss_pred hhhhhhHHHhccccchHHHHHHHHHHHHhcCC
Q 048364 169 GKSAHGFIVKNEWELNEQIATILVDMYAKCGF 200 (400)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 200 (400)
+..+++.|...|+.||..+-..|++++.+.+.
T Consensus 142 ~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 142 AIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 67777778888888888887788887776654
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.71 E-value=3.3 Score=33.98 Aligned_cols=55 Identities=11% Similarity=0.135 Sum_probs=39.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCc---hHHHHHHHHhhcccchHHHHHHHHHH
Q 048364 325 FLAACKEHKQFDMAERVIKQALRMVKPENDG---GVFTLICDLYTMNEKWEGAERVRKLM 381 (400)
Q Consensus 325 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m 381 (400)
+.+-|.+.|.+..|..-+++|++.- | ... ..+..+..+|...|-.++|...-+-+
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y-~-~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENY-P-DTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcc-c-cccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 4456788888888888888888875 4 333 35556667788888888887765443
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.3 Score=25.61 Aligned_cols=29 Identities=17% Similarity=0.224 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 321 IWGSFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 321 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
.+..+...+...|++++|.+.+++.++..
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 44556666677777777777777777666
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.27 Score=25.92 Aligned_cols=30 Identities=13% Similarity=0.077 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 320 IIWGSFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 320 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
.+|..+..+|...|++++|+..++++++..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 356667777777777777777777777766
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.77 Score=31.42 Aligned_cols=60 Identities=10% Similarity=0.148 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHH
Q 048364 234 DALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295 (400)
Q Consensus 234 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 295 (400)
+..+-+..+....+.|++....+.+++|.+.+++..|.++++-++.+.+.. ...|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 455666666677788999999999999999999999999999998765533 336766654
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.06 E-value=2.8 Score=35.88 Aligned_cols=94 Identities=13% Similarity=0.194 Sum_probs=54.0
Q ss_pred HHHHHHHHHhccC-------CCcccHHHHHHHHHhCCCh----hhHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCC-
Q 048364 201 LKYALMVFELMEE-------RNVISWTALICGSAHRGYS----EDALSLFEMMQATGVKPNE--MTFTGVLTACVHTGL- 266 (400)
Q Consensus 201 ~~~A~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~----~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~- 266 (400)
..+|..+|+.|++ ++-.++..++.. ..++. +.+..+|+.+.+.|...+. .....++..+.....
T Consensus 119 ~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~ 196 (297)
T PF13170_consen 119 IQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQE 196 (297)
T ss_pred HHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchH
Confidence 4567778888876 233445444433 22332 5667788888887766543 233333332222222
Q ss_pred -hhhHHHHHHHhhhhcCCCCChhhHHHHHHHH
Q 048364 267 -VDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297 (400)
Q Consensus 267 -~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 297 (400)
...+..+++.+.+. ++++....|..+.-..
T Consensus 197 ~v~r~~~l~~~l~~~-~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 197 KVARVIELYNALKKN-GVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHc-CCccccccccHHHHHH
Confidence 34677788888854 8888777776654433
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.94 E-value=2.8 Score=33.43 Aligned_cols=29 Identities=14% Similarity=0.059 Sum_probs=18.0
Q ss_pred ccHHHHHHHHHhCCChhhHHHHHHHHHHC
Q 048364 217 ISWTALICGSAHRGYSEDALSLFEMMQAT 245 (400)
Q Consensus 217 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 245 (400)
..||-+.--+...|+++.|.+.|+...+.
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~EL 128 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLEL 128 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhcc
Confidence 45666666666666666666666666554
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=92.74 E-value=2.8 Score=30.45 Aligned_cols=137 Identities=13% Similarity=0.102 Sum_probs=79.2
Q ss_pred HHhcCCHHHHHHHHHhccC-CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 048364 195 YAKCGFLKYALMVFELMEE-RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKY 273 (400)
Q Consensus 195 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 273 (400)
..-.|..++..++..+... .+..-+|-+|.-....-+-+-..+.++.. |--.|.. ..|+.......
T Consensus 12 ~ildG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsI---GkiFDis----------~C~NlKrVi~C 78 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSI---GKIFDIS----------KCGNLKRVIEC 78 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHH---GGGS-GG----------G-S-THHHHHH
T ss_pred HHHhchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHH---hhhcCch----------hhcchHHHHHH
Confidence 3456888888888887765 34445555554444444444444444443 3222322 22333333333
Q ss_pred HHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc--cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048364 274 FKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM--RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVK 350 (400)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 350 (400)
+-.+- .+.......+..+..+|+-+.-.+++.++ .-.|++...-.+..+|.+.|+..++.+++.++.+.|.
T Consensus 79 ~~~~n------~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 79 YAKRN------KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHTT---------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHhc------chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 32222 12334455667788888888888888887 4567788888888999999999999999999998883
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=92.63 E-value=1.2 Score=30.18 Aligned_cols=63 Identities=10% Similarity=0.130 Sum_probs=47.4
Q ss_pred ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHH
Q 048364 231 YSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295 (400)
Q Consensus 231 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 295 (400)
+.-++.+-++.+......|++....+.+++|.+.+++..|.++++-++.+.+. +...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 34456666777777788899999999999999999999999999988754433 3445665544
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=92.11 E-value=8.8 Score=34.65 Aligned_cols=143 Identities=12% Similarity=0.066 Sum_probs=94.2
Q ss_pred CHHHHHHHHHhcc---CCC---cccHHHHHHHHHhC---------CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048364 200 FLKYALMVFELME---ERN---VISWTALICGSAHR---------GYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHT 264 (400)
Q Consensus 200 ~~~~A~~~~~~~~---~~~---~~~~~~l~~~~~~~---------~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 264 (400)
..+.|..+|.+.. +-| ...|..+..++... ....+|.++-++..+.+ +-|......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 3567888898887 433 33455444443321 22345666666666664 33777777777777788
Q ss_pred CChhhHHHHHHHhhhhcCCCCCh-hhHHHHHHHHHhcCChHHHHHHHHhc-cCCccHH---HHHHHHHHHHhcCCHHHHH
Q 048364 265 GLVDEGRKYFKMIDEEYDLEPRI-QHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNVI---IWGSFLAACKEHKQFDMAE 339 (400)
Q Consensus 265 ~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~~---~~~~l~~~~~~~~~~~~a~ 339 (400)
++++.|...|++.. .+.|+. ..|....-...-.|+.++|.+.+++. ...|... .....+..|+.. ..+.|+
T Consensus 352 ~~~~~a~~~f~rA~---~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~ 427 (458)
T PRK11906 352 GQAKVSHILFEQAK---IHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNI 427 (458)
T ss_pred cchhhHHHHHHHHh---hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhH
Confidence 88999999999998 455653 45555566667799999999999995 7777543 333444466554 577888
Q ss_pred HHHHHHHH
Q 048364 340 RVIKQALR 347 (400)
Q Consensus 340 ~~~~~~~~ 347 (400)
+++-+-.+
T Consensus 428 ~~~~~~~~ 435 (458)
T PRK11906 428 KLYYKETE 435 (458)
T ss_pred HHHhhccc
Confidence 87765433
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.95 E-value=1.8 Score=36.25 Aligned_cols=72 Identities=14% Similarity=0.111 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc--------cCCccHHHHHHH
Q 048364 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM--------RLEPNVIIWGSF 325 (400)
Q Consensus 254 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--------~~~p~~~~~~~l 325 (400)
+..++..+...|+.+.+...++.+.. --+-+...|..++.+|.+.|+...|...|+.+ |+.|...+....
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~--~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIE--LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 33444444455555555555555542 11224445555555555555555555555444 455555444433
Q ss_pred HH
Q 048364 326 LA 327 (400)
Q Consensus 326 ~~ 327 (400)
..
T Consensus 234 ~~ 235 (280)
T COG3629 234 EE 235 (280)
T ss_pred HH
Confidence 33
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=91.89 E-value=2.8 Score=37.62 Aligned_cols=86 Identities=12% Similarity=0.102 Sum_probs=39.9
Q ss_pred HhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-c-CCccHHHHHHHHHHHHhcCCHHHHH
Q 048364 262 VHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-R-LEPNVIIWGSFLAACKEHKQFDMAE 339 (400)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~ 339 (400)
...|.++.+.+.+....+ -+.....+..++++...+.|++++|...-..| + ..-+..............|-++++.
T Consensus 334 ~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~ 411 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSY 411 (831)
T ss_pred HHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHH
Confidence 344555555555554442 22233444555555555555555555555554 1 1112222222222333444555555
Q ss_pred HHHHHHHHcC
Q 048364 340 RVIKQALRMV 349 (400)
Q Consensus 340 ~~~~~~~~~~ 349 (400)
-.|++....+
T Consensus 412 ~~wk~~~~~~ 421 (831)
T PRK15180 412 HYWKRVLLLN 421 (831)
T ss_pred HHHHHHhccC
Confidence 5555555555
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.77 E-value=4.5 Score=37.50 Aligned_cols=125 Identities=19% Similarity=0.082 Sum_probs=58.6
Q ss_pred hcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHH
Q 048364 197 KCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKM 276 (400)
Q Consensus 197 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 276 (400)
-.|+++.|..++..+.+ ...+.++.-+.+.|-.++|+++- ..|+. -| ....+.|+++.|.++..+
T Consensus 598 mrrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~s-------~D~d~-rF----elal~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALELS-------TDPDQ-RF----ELALKLGRLDIAFDLAVE 662 (794)
T ss_pred hhccccccccccccCch---hhhhhHHhHhhhccchHhhhhcC-------CChhh-hh----hhhhhcCcHHHHHHHHHh
Confidence 34566666555544442 22333444445555555554431 11111 11 122345666666555443
Q ss_pred hhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 277 IDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 277 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
.. +..-|..|.++..+.|++..|.+.|.+.. -|..|+-.+...|+-+....+-....+.+
T Consensus 663 ~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g 722 (794)
T KOG0276|consen 663 AN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQG 722 (794)
T ss_pred hc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhc
Confidence 32 23446666666666666666666665541 13334444444455444444444444444
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=91.76 E-value=0.42 Score=40.57 Aligned_cols=89 Identities=13% Similarity=0.042 Sum_probs=66.2
Q ss_pred HHHHhcCChhhHHHHHHHhhhhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhc-cCC-ccHHHHHHHHHHHHhcCCH
Q 048364 259 TACVHTGLVDEGRKYFKMIDEEYDLEP-RIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLE-PNVIIWGSFLAACKEHKQF 335 (400)
Q Consensus 259 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~ 335 (400)
.-|.++|.+++|+..|.... ...| ++.++..-..+|.+...+..|+.-.... .+. .-...|..-+.+-...|..
T Consensus 105 N~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 35888999999999998877 3455 8888888889999999998887766655 211 1223455555555567788
Q ss_pred HHHHHHHHHHHHcCCC
Q 048364 336 DMAERVIKQALRMVKP 351 (400)
Q Consensus 336 ~~a~~~~~~~~~~~~~ 351 (400)
.+|.+-++.++++. |
T Consensus 182 ~EAKkD~E~vL~LE-P 196 (536)
T KOG4648|consen 182 MEAKKDCETVLALE-P 196 (536)
T ss_pred HHHHHhHHHHHhhC-c
Confidence 88888888888888 7
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.57 E-value=2.1 Score=32.42 Aligned_cols=117 Identities=15% Similarity=0.142 Sum_probs=69.1
Q ss_pred HHHHHHHHH---HHhcCChhhHHHHHHHhhhhcCCCCChhhHH-HHHHHHHhcCChHHHHHHHHhc-cCCccHHHHHHHH
Q 048364 252 MTFTGVLTA---CVHTGLVDEGRKYFKMIDEEYDLEPRIQHYG-CMVDLFGKAGFLEEAYEVIRTM-RLEPNVIIWGSFL 326 (400)
Q Consensus 252 ~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~-~~~p~~~~~~~l~ 326 (400)
...+.|+.. -.+.++.+++..++.-+. -+.|...... .-...+...|++.+|..+|+++ .-.|....-..|+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALl 84 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALL 84 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHH
Confidence 344444443 456788999999998887 4566543332 2344567899999999999999 4345444455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHH
Q 048364 327 AACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAE 375 (400)
Q Consensus 327 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 375 (400)
..|....+-..=...-+++.+.+ + ++.+-. ++..+....+...|.
T Consensus 85 A~CL~~~~D~~Wr~~A~evle~~-~--d~~a~~-Lv~~Ll~~~~~~~a~ 129 (160)
T PF09613_consen 85 ALCLYALGDPSWRRYADEVLESG-A--DPDARA-LVRALLARADLEPAH 129 (160)
T ss_pred HHHHHHcCChHHHHHHHHHHhcC-C--ChHHHH-HHHHHHHhccccchh
Confidence 55555444444455566666666 4 444433 334444443434443
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.52 E-value=3.8 Score=34.66 Aligned_cols=48 Identities=15% Similarity=0.081 Sum_probs=25.5
Q ss_pred CChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc
Q 048364 265 GLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313 (400)
Q Consensus 265 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 313 (400)
-++++++.++..=. ++|+-||..+++.+++.+.+.+++.+|..+...|
T Consensus 114 y~pq~~i~~l~npI-qYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~ 161 (418)
T KOG4570|consen 114 YDPQKAIYTLVNPI-QYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEV 161 (418)
T ss_pred cChHHHHHHHhCcc-hhccccchhhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 34445555554444 4455555555555555555555555555555444
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=91.51 E-value=11 Score=34.46 Aligned_cols=173 Identities=10% Similarity=0.074 Sum_probs=97.1
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHhccC--CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048364 184 NEQIATILVDMYAKCGFLKYALMVFELMEE--RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTAC 261 (400)
Q Consensus 184 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 261 (400)
|.....+++..+..+..+.-.+.+..+|.. .+-..|..++++|... ..++-..+|+++.+.... |...-.-|...|
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~y 142 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKY 142 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHH
Confidence 444455666667666666667777776664 4556677777777776 456677777777665332 222223333333
Q ss_pred HhcCChhhHHHHHHHhhhhcCCCCC------hhhHHHHHHHHHhcCChHHHHHHHHhc----cCCccHHHHHHHHHHHHh
Q 048364 262 VHTGLVDEGRKYFKMIDEEYDLEPR------IQHYGCMVDLFGKAGFLEEAYEVIRTM----RLEPNVIIWGSFLAACKE 331 (400)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~p~~~~~~~l~~~~~~ 331 (400)
..++.+.+..+|.++..+ +-|. ...|..+... -..+.+..+.+..++ |...-...+.-+-.-|..
T Consensus 143 -Ekik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 143 -EKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred -HHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 346667777777666642 2221 1233333221 134455555555555 333344455555566677
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHh
Q 048364 332 HKQFDMAERVIKQALRMVKPENDGGVFTLICDLY 365 (400)
Q Consensus 332 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 365 (400)
..++++|++++..+.+.+ - .+..+-..++..+
T Consensus 218 ~eN~~eai~Ilk~il~~d-~-k~~~ar~~~i~~l 249 (711)
T COG1747 218 NENWTEAIRILKHILEHD-E-KDVWARKEIIENL 249 (711)
T ss_pred ccCHHHHHHHHHHHhhhc-c-hhhhHHHHHHHHH
Confidence 777777777777777666 4 4555555554443
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.50 E-value=6.5 Score=31.86 Aligned_cols=24 Identities=17% Similarity=0.159 Sum_probs=19.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 326 LAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 326 ~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
...-...+++.+|+++|+++....
T Consensus 161 A~yaa~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 161 AQYAAQLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334457789999999999998876
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.48 E-value=14 Score=35.61 Aligned_cols=168 Identities=9% Similarity=0.105 Sum_probs=95.9
Q ss_pred HHhcccchhHHHHHHHHHHHHhCccc---chhhhhHHHHHH-HhCCHHHHHHHHhhCCCCChhhHHHHHHHHHcCCChHH
Q 048364 24 KSCTHFNNLTVIHHLHSHILKLGFIS---HVYVATSLLHEY-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCE 99 (400)
Q Consensus 24 ~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 99 (400)
+-+.+.+.+++|+++-+... |..| -...+...+..+ ..|++++|-...-.|...+..-|..-+..+...++...
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~ 441 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTD 441 (846)
T ss_pred HHHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccch
Confidence 34445566666666655432 2233 234566667777 88888888888888888888888877777777777655
Q ss_pred HHHHHhhCCC-CChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHh
Q 048364 100 ARDFFERMPL-RNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178 (400)
Q Consensus 100 a~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~ 178 (400)
...++=.-.. -+...|..++-.+.. .....+++... ..+...|..+--.-+-..++.+
T Consensus 442 Ia~~lPt~~~rL~p~vYemvLve~L~----~~~~~F~e~i~-----~Wp~~Lys~l~iisa~~~q~~q------------ 500 (846)
T KOG2066|consen 442 IAPYLPTGPPRLKPLVYEMVLVEFLA----SDVKGFLELIK-----EWPGHLYSVLTIISATEPQIKQ------------ 500 (846)
T ss_pred hhccCCCCCcccCchHHHHHHHHHHH----HHHHHHHHHHH-----hCChhhhhhhHHHhhcchHHHh------------
Confidence 4444332222 255677777777766 22222222222 1222233322221111111111
Q ss_pred ccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCc
Q 048364 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNV 216 (400)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 216 (400)
. .-+...-..|+..|...+++..|..++-...++++
T Consensus 501 ~--Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 501 N--SESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred h--ccchhHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 1 01122333488999999999999999988876543
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=91.09 E-value=2.4 Score=29.15 Aligned_cols=48 Identities=21% Similarity=0.349 Sum_probs=33.3
Q ss_pred ccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHH
Q 048364 313 MRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLIC 362 (400)
Q Consensus 313 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 362 (400)
+.+.|+..+..+.+++|.+.+++..|.++++-+..+-.+ ....|..++
T Consensus 39 ~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~--~~~~Y~~~l 86 (108)
T PF02284_consen 39 YDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGN--KKEIYPYIL 86 (108)
T ss_dssp SSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHH
T ss_pred cccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--hHHHHHHHH
Confidence 378888889999999999999999999999888877623 333665554
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=90.95 E-value=9.4 Score=32.72 Aligned_cols=141 Identities=9% Similarity=0.157 Sum_probs=79.9
Q ss_pred hhHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--c----CChhhHHHHHHHhhhhcCCCC--ChhhHHHHHHHHHhcCCh-
Q 048364 233 EDALSLFEMMQATGVKPNEMTFTGVLTACVH--T----GLVDEGRKYFKMIDEEYDLEP--RIQHYGCMVDLFGKAGFL- 303 (400)
Q Consensus 233 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~--~----~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~- 303 (400)
++.+.+++.|.+.|..-+..+|.+....... . .....|..+|+.|++++.+-- +...+..++.. ..++.
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 4566788899999988887777664443333 2 235678889999997755432 33334444322 34443
Q ss_pred ---HHHHHHHHhc---cCCc-c-HHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHH
Q 048364 304 ---EEAYEVIRTM---RLEP-N-VIIWGSFLAACKEHK--QFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEG 373 (400)
Q Consensus 304 ---~~a~~~~~~~---~~~p-~-~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 373 (400)
+.++.+|+.+ |+.. | ......++..+-... ....+..+++.+.+.+. +.....|..++-...-.+..++
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~-kik~~~yp~lGlLall~~~~~~ 235 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGV-KIKYMHYPTLGLLALLEDPEEK 235 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCC-ccccccccHHHHHHhcCCchHH
Confidence 3445555555 5444 2 233333333332221 25578889999999884 3666666666554444444323
Q ss_pred HHH
Q 048364 374 AER 376 (400)
Q Consensus 374 a~~ 376 (400)
...
T Consensus 236 ~~~ 238 (297)
T PF13170_consen 236 IVE 238 (297)
T ss_pred HHH
Confidence 333
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=90.87 E-value=0.31 Score=36.50 Aligned_cols=84 Identities=18% Similarity=0.175 Sum_probs=56.0
Q ss_pred HHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChh
Q 048364 154 VLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSE 233 (400)
Q Consensus 154 ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 233 (400)
++..+.+.+.... ...+++.+...+...+....+.++..|++.++.++..++++... ..-...++..|.+.|.++
T Consensus 13 vi~~~~~~~~~~~--l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~---~yd~~~~~~~c~~~~l~~ 87 (143)
T PF00637_consen 13 VISAFEERNQPEE--LIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN---NYDLDKALRLCEKHGLYE 87 (143)
T ss_dssp CHHHCTTTT-GGG--CTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS---SS-CTHHHHHHHTTTSHH
T ss_pred HHHHHHhCCCHHH--HHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc---ccCHHHHHHHHHhcchHH
Confidence 4566667777777 77888888876666678888888888888877777777766322 233345566666677777
Q ss_pred hHHHHHHHH
Q 048364 234 DALSLFEMM 242 (400)
Q Consensus 234 ~a~~~~~~m 242 (400)
++.-++.++
T Consensus 88 ~a~~Ly~~~ 96 (143)
T PF00637_consen 88 EAVYLYSKL 96 (143)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHHc
Confidence 776666553
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.84 E-value=9.5 Score=32.57 Aligned_cols=24 Identities=4% Similarity=-0.015 Sum_probs=12.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHh
Q 048364 254 FTGVLTACVHTGLVDEGRKYFKMI 277 (400)
Q Consensus 254 ~~~l~~~~~~~~~~~~a~~~~~~~ 277 (400)
......-|++.|+.+.|.+.+...
T Consensus 107 ~~~kaeYycqigDkena~~~~~~t 130 (393)
T KOG0687|consen 107 MLRKAEYYCQIGDKENALEALRKT 130 (393)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHH
Confidence 333444455555555555555433
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=90.83 E-value=5.8 Score=30.09 Aligned_cols=55 Identities=15% Similarity=0.173 Sum_probs=38.3
Q ss_pred HHHHhCCChhhHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCChhhHHHHHHHhhhh
Q 048364 224 CGSAHRGYSEDALSLFEMMQATGVKPNEMTFT-GVLTACVHTGLVDEGRKYFKMIDEE 280 (400)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~ 280 (400)
..-...++.+++..++..+.-. .|...... .-...+...|++.+|..+|+.+..+
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 3445678899999999998875 44433222 1223357789999999999998753
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.75 E-value=0.37 Score=25.38 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=11.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhc
Q 048364 290 YGCMVDLFGKAGFLEEAYEVIRTM 313 (400)
Q Consensus 290 ~~~l~~~~~~~g~~~~a~~~~~~~ 313 (400)
|..+..+|...|++++|+..|++.
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~a 27 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRA 27 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHH
Confidence 444455555555555555555444
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=90.61 E-value=0.8 Score=25.29 Aligned_cols=28 Identities=14% Similarity=0.297 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048364 320 IIWGSFLAACKEHKQFDMAERVIKQALR 347 (400)
Q Consensus 320 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (400)
.+++.+...|...|++++|..+++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3556666666666666666666666554
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=90.50 E-value=31 Score=38.01 Aligned_cols=309 Identities=11% Similarity=0.068 Sum_probs=163.4
Q ss_pred HhCCHHHHHHHHhhC----CCC--ChhhHHHHHHHHHcCCChHHHHHHHhh-CCCCChhhHHHHHHHHHhcCCcchHHHH
Q 048364 62 VVTSFGFARKLFDEL----PER--NAVTWNTMIKGYSKSGNVCEARDFFER-MPLRNVASWSAMIAAYLNAGAYDPGLKL 134 (400)
Q Consensus 62 ~~g~~~~a~~~~~~~----~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 134 (400)
+++.+..|...++.- .+. ....|..+...|+.-+++|...-+... ...|+. + .-+......|+++.|...
T Consensus 1395 rc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl--~-~qil~~e~~g~~~da~~C 1471 (2382)
T KOG0890|consen 1395 RCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL--Y-QQILEHEASGNWADAAAC 1471 (2382)
T ss_pred hhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH--H-HHHHHHHhhccHHHHHHH
Confidence 889999999999883 222 223344555589999999888888774 333332 2 234456788999999999
Q ss_pred HHHHHhcCCCCCC-HHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC
Q 048364 135 FREMISNEGLTPD-QMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE 213 (400)
Q Consensus 135 ~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 213 (400)
|+.+. +..|+ ..+++.++..-...+.+.. .....+....+.-+-....++.=+.+--+.++++....... +
T Consensus 1472 ye~~~---q~~p~~~~~~~g~l~sml~~~~l~t--~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~ 1543 (2382)
T KOG0890|consen 1472 YERLI---QKDPDKEKHHSGVLKSMLAIQHLST--EILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS---D 1543 (2382)
T ss_pred HHHhh---cCCCccccchhhHHHhhhcccchhH--HHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh---c
Confidence 99998 55666 5677777777766676665 33333322222211112222333344467788887777665 4
Q ss_pred CCcccHHHH--HHHHHhCC--ChhhHHHHHHHHHHCCCCC--------C-HHHHHHHHHHHHhcCChhhHHHHHHHhhhh
Q 048364 214 RNVISWTAL--ICGSAHRG--YSEDALSLFEMMQATGVKP--------N-EMTFTGVLTACVHTGLVDEGRKYFKMIDEE 280 (400)
Q Consensus 214 ~~~~~~~~l--~~~~~~~~--~~~~a~~~~~~m~~~~~~p--------~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 280 (400)
.+...|... +..+.+.. +.-.-.+..+.+++.-+.| + ...|..++..+.-.. .+.-.+.+......
T Consensus 1544 ~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e-l~~~~~~l~~~s~~ 1622 (2382)
T KOG0890|consen 1544 RNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE-LENSIEELKKVSYD 1622 (2382)
T ss_pred ccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH-HHHHHHHhhccCcc
Confidence 455555544 22322222 2111112333333221111 0 123333333322111 11111111111100
Q ss_pred cCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc----cCCc-----cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048364 281 YDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM----RLEP-----NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKP 351 (400)
Q Consensus 281 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~p-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 351 (400)
....-+...|..-++.=....+..+-.--+++. ...| -..+|-...+.....|.++.|...+-.+.+.. +
T Consensus 1623 ~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~ 1701 (2382)
T KOG0890|consen 1623 EDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR-L 1701 (2382)
T ss_pred ccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-c
Confidence 000111111222221111111111111111111 1122 23577788888888999999988877777766 3
Q ss_pred CCCchHHHHHHHHhhcccchHHHHHHHHHHhcccc
Q 048364 352 ENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNV 386 (400)
Q Consensus 352 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 386 (400)
+..+...+......|+...|+.++++..+...
T Consensus 1702 ---~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1702 ---PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred ---chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 46778888888899999999999888875443
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=90.47 E-value=2.4 Score=28.76 Aligned_cols=47 Identities=19% Similarity=0.357 Sum_probs=32.1
Q ss_pred cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHH
Q 048364 314 RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLIC 362 (400)
Q Consensus 314 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 362 (400)
.+.|+..+..+.+++|.+.+++..|.++++-++.+- . .+...|..++
T Consensus 37 DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~-~~~~~y~~~l 83 (103)
T cd00923 37 DLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-G-AHKEIYPYIL 83 (103)
T ss_pred ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-c-CchhhHHHHH
Confidence 677788888888888888888888888888777554 2 2333454443
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.39 E-value=9.2 Score=31.70 Aligned_cols=185 Identities=12% Similarity=0.115 Sum_probs=112.0
Q ss_pred cCCHHHHHHHHHhccC--CC-----cccHHHHHHHHHhCCChhhHHHHHHHHHHC---CC--CCCHHHHHHHHHHHHhcC
Q 048364 198 CGFLKYALMVFELMEE--RN-----VISWTALICGSAHRGYSEDALSLFEMMQAT---GV--KPNEMTFTGVLTACVHTG 265 (400)
Q Consensus 198 ~g~~~~A~~~~~~~~~--~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~--~p~~~~~~~l~~~~~~~~ 265 (400)
..+.++|..-|.++.+ +. -.+...++..+.+.|++++.+..|.+|... .+ .-+..+.++++...+...
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3467777777777664 11 123445677888888888888888877542 11 124456677777666666
Q ss_pred ChhhHHHHHHHhhhh----cCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc--cC-----Ccc-------HHHHHHHHH
Q 048364 266 LVDEGRKYFKMIDEE----YDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM--RL-----EPN-------VIIWGSFLA 327 (400)
Q Consensus 266 ~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~-----~p~-------~~~~~~l~~ 327 (400)
+.+....+|+.-... .+-+.-..+-..|...|...|.+.+..++++++ .+ ..| ...|..=|.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 665555555433211 122222334456778888888888888888877 10 111 235666677
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHH----hhcccchHHHHH-HHHHHh
Q 048364 328 ACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDL----YTMNEKWEGAER-VRKLML 382 (400)
Q Consensus 328 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~g~~~~a~~-~~~~m~ 382 (400)
.|..+.+-.....++++.+.....-|.+.....+-.+ ..+.|.|++|.. +|+...
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHh
Confidence 8888888888888888877655322455444333222 346788888764 444444
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=90.13 E-value=15 Score=33.65 Aligned_cols=162 Identities=17% Similarity=0.183 Sum_probs=115.4
Q ss_pred CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHH
Q 048364 215 NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMV 294 (400)
Q Consensus 215 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 294 (400)
|....-+++..+..+-.+.-...+-.+|..-| -+...|..++++|... ..++-..+++++.+ +.+ .|+..-..|.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve-~df-nDvv~~ReLa 139 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVE-YDF-NDVVIGRELA 139 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHH-hcc-hhHHHHHHHH
Confidence 44566778888888888898999999999875 3678899999999888 56778888998884 233 2344444555
Q ss_pred HHHHhcCChHHHHHHHHhc--cCCc---c---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhh
Q 048364 295 DLFGKAGFLEEAYEVIRTM--RLEP---N---VIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYT 366 (400)
Q Consensus 295 ~~~~~~g~~~~a~~~~~~~--~~~p---~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 366 (400)
..|-+ ++..++..+|.++ .+.| + ...|..+...- ..+.+....+..++.....-..-...+..+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 55555 8889999999888 4444 1 12455444321 45778888888888776533234456666668899
Q ss_pred cccchHHHHHHHHHHhcc
Q 048364 367 MNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 367 ~~g~~~~a~~~~~~m~~~ 384 (400)
...+|++|+++++.+.++
T Consensus 217 ~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 217 ENENWTEAIRILKHILEH 234 (711)
T ss_pred cccCHHHHHHHHHHHhhh
Confidence 999999999999966553
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.75 E-value=11 Score=31.39 Aligned_cols=82 Identities=13% Similarity=0.227 Sum_probs=42.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccC--------C-------CcccHHHHHHHHHhCCChhhHHHHHHHHHHCC-CCCCHHH
Q 048364 190 ILVDMYAKCGFLKYALMVFELMEE--------R-------NVISWTALICGSAHRGYSEDALSLFEMMQATG-VKPNEMT 253 (400)
Q Consensus 190 ~l~~~~~~~g~~~~A~~~~~~~~~--------~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~ 253 (400)
.|...|...|.+.+..++++++.+ . -...|..=|+.|....+-.....+|++..... -.|.+..
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI 229 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI 229 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH
Confidence 345555555666666666655542 0 12345555666766666666666776655432 2333333
Q ss_pred HHHHHHHH-----HhcCChhhHHH
Q 048364 254 FTGVLTAC-----VHTGLVDEGRK 272 (400)
Q Consensus 254 ~~~l~~~~-----~~~~~~~~a~~ 272 (400)
. .+|+-| .+.|++++|-.
T Consensus 230 m-GvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 230 M-GVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred H-hHHHHcCCccccccchHHHHHh
Confidence 2 233333 34566666543
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.70 E-value=0.54 Score=24.60 Aligned_cols=28 Identities=14% Similarity=0.114 Sum_probs=24.3
Q ss_pred hHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 356 GVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 356 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
..+..++.+|...|++++|++.+++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5678899999999999999999998875
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=89.56 E-value=2.8 Score=31.19 Aligned_cols=79 Identities=13% Similarity=0.181 Sum_probs=51.8
Q ss_pred hhHHHHHHHH---HhcCChHHHHHHHHhc-cCCccH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHH
Q 048364 288 QHYGCMVDLF---GKAGFLEEAYEVIRTM-RLEPNV---IIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360 (400)
Q Consensus 288 ~~~~~l~~~~---~~~g~~~~a~~~~~~~-~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 360 (400)
.+.+.||+.. ...++++++..+++.| -+.|+. .++.. ..+...|++++|.++|++..+.. + ..+..-..
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~~-~-~~p~~kAL 83 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDG--WLLIARGNYDEAARILRELLSSA-G-APPYGKAL 83 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHH--HHHHHcCCHHHHHHHHHhhhccC-C-CchHHHHH
Confidence 3444454433 4588999999999999 455644 34443 44778999999999999998887 4 33433344
Q ss_pred HHHHhhcccc
Q 048364 361 ICDLYTMNEK 370 (400)
Q Consensus 361 l~~~~~~~g~ 370 (400)
+..++.-.|+
T Consensus 84 ~A~CL~al~D 93 (153)
T TIGR02561 84 LALCLNAKGD 93 (153)
T ss_pred HHHHHHhcCC
Confidence 4444444454
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=89.32 E-value=1.1 Score=23.09 Aligned_cols=25 Identities=8% Similarity=0.129 Sum_probs=15.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 325 FLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 325 l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
+..++.+.|++++|.+.|+++++..
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHC
Confidence 4445555666666666666666655
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.28 E-value=5.7 Score=36.87 Aligned_cols=46 Identities=22% Similarity=0.180 Sum_probs=26.8
Q ss_pred HcCCChHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHH
Q 048364 92 SKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMI 139 (400)
Q Consensus 92 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 139 (400)
.+.|+++.|.++..+.. +..-|..|.++..+.|++..|.+.|....
T Consensus 648 l~lgrl~iA~~la~e~~--s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN--SEVKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred hhcCcHHHHHHHHHhhc--chHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 34555555555544332 44556666666666666666666665554
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=89.13 E-value=1.1 Score=23.47 Aligned_cols=29 Identities=10% Similarity=0.148 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 321 IWGSFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 321 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
+|..+...|...|++++|...|++.++..
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 45555666666667777777666666655
|
... |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.77 E-value=1.8 Score=34.44 Aligned_cols=60 Identities=10% Similarity=0.035 Sum_probs=42.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 290 YGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 290 ~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
.+.-++.+.+.+...+|+...++- +-+| |..+-..+++.++-.|++++|..-++-.-...
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~ 65 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLS 65 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcC
Confidence 344566677777888888777665 4455 44556667788888888888887777776665
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=88.52 E-value=0.63 Score=22.83 Aligned_cols=22 Identities=14% Similarity=0.069 Sum_probs=11.7
Q ss_pred HHHHHHHhhcccchHHHHHHHH
Q 048364 358 FTLICDLYTMNEKWEGAERVRK 379 (400)
Q Consensus 358 ~~~l~~~~~~~g~~~~a~~~~~ 379 (400)
...+..++...|++++|..+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3445555555555555555543
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=87.95 E-value=0.82 Score=25.25 Aligned_cols=29 Identities=14% Similarity=0.271 Sum_probs=24.9
Q ss_pred chHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 355 GGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 355 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
..+++.|+..|...|++++|..++++..+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35788999999999999999999998875
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=87.85 E-value=4 Score=35.00 Aligned_cols=93 Identities=17% Similarity=0.108 Sum_probs=61.6
Q ss_pred HHHHHhCCChhhHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcC
Q 048364 223 ICGSAHRGYSEDALSLFEMMQATGVKP-NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301 (400)
Q Consensus 223 ~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 301 (400)
..-|.+.|.+++|+..|..-... .| |.+++..-..+|.+..++..|+.=-.....- + ..-...|..-+.+-...|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL-d-~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL-D-KLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh-h-HHHHHHHHHHHHHHHHHh
Confidence 45799999999999999887664 45 8899999999999999888776655544420 0 011223444444444455
Q ss_pred ChHHHHHHHHhc-cCCccH
Q 048364 302 FLEEAYEVIRTM-RLEPNV 319 (400)
Q Consensus 302 ~~~~a~~~~~~~-~~~p~~ 319 (400)
+..+|.+-++.. .+.|+.
T Consensus 180 ~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKN 198 (536)
T ss_pred hHHHHHHhHHHHHhhCccc
Confidence 566666555555 677764
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=87.82 E-value=5.9 Score=31.32 Aligned_cols=73 Identities=12% Similarity=0.009 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcC--CCCChhhHHHHHHHHHhcCChHHH
Q 048364 233 EDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYD--LEPRIQHYGCMVDLFGKAGFLEEA 306 (400)
Q Consensus 233 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a 306 (400)
+.|.+.|-++...+.--++.....|...|. ..+.+++.+++.+..+-++ -.+|+..+.+|+..|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 345555555544443333333333333332 4455555555544443211 133455555555555555555544
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=87.63 E-value=0.71 Score=23.86 Aligned_cols=28 Identities=7% Similarity=0.117 Sum_probs=24.1
Q ss_pred HHHHHHHHhhcccchHHHHHHHHHHhcc
Q 048364 357 VFTLICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 357 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
++..++.++.+.|++++|.+.|+++++.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4567888999999999999999998763
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=87.44 E-value=0.63 Score=24.67 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=11.7
Q ss_pred ChhhHHHHHHHHHhcCChHHHH
Q 048364 286 RIQHYGCMVDLFGKAGFLEEAY 307 (400)
Q Consensus 286 ~~~~~~~l~~~~~~~g~~~~a~ 307 (400)
+...|+.+...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 4455555555555555555553
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=87.19 E-value=0.8 Score=26.03 Aligned_cols=28 Identities=14% Similarity=0.174 Sum_probs=21.0
Q ss_pred HHHHHHhhcccchHHHHHHHHHHhcccc
Q 048364 359 TLICDLYTMNEKWEGAERVRKLMLNQNV 386 (400)
Q Consensus 359 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 386 (400)
..|..+|...|+.+.|.+++++....|-
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 3567788888888888888888875443
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.07 E-value=5.5 Score=31.90 Aligned_cols=59 Identities=8% Similarity=-0.029 Sum_probs=38.0
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhh
Q 048364 219 WTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMID 278 (400)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 278 (400)
.+.-++.+.+.+...+++...++-.+.+ +.|..+-..+++.++-.|++++|..-++-.-
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a 62 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAA 62 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHh
Confidence 3445566677777777777777666552 2245556667777777777777766555443
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=86.90 E-value=13 Score=29.20 Aligned_cols=78 Identities=6% Similarity=-0.012 Sum_probs=43.5
Q ss_pred HhCCHHHHHHHHhhCCC-CChhhH-----HHHHHHHHcCCChHHHHHHHhhCCCCChhh--HHHHHHHHHhcCCcchHHH
Q 048364 62 VVTSFGFARKLFDELPE-RNAVTW-----NTMIKGYSKSGNVCEARDFFERMPLRNVAS--WSAMIAAYLNAGAYDPGLK 133 (400)
Q Consensus 62 ~~g~~~~a~~~~~~~~~-~~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~ 133 (400)
.+|++++|...++.... +....+ -.|.+.....|.+|+|+.+++....++-.+ ...-.+.+...|+-++|..
T Consensus 101 e~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ 180 (207)
T COG2976 101 EANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARA 180 (207)
T ss_pred hhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHH
Confidence 66666666666665542 221222 223345566666777776666665553332 2223345666666777776
Q ss_pred HHHHHH
Q 048364 134 LFREMI 139 (400)
Q Consensus 134 ~~~~m~ 139 (400)
-|++.+
T Consensus 181 ay~kAl 186 (207)
T COG2976 181 AYEKAL 186 (207)
T ss_pred HHHHHH
Confidence 666666
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=86.75 E-value=34 Score=33.72 Aligned_cols=196 Identities=13% Similarity=0.121 Sum_probs=95.9
Q ss_pred HHhcCCHHHHHHHHHhccC----CCc-------ccHHHHH-HHHHhCCChhhHHHHHHHHHHC----CCCCCHHHHHHHH
Q 048364 195 YAKCGFLKYALMVFELMEE----RNV-------ISWTALI-CGSAHRGYSEDALSLFEMMQAT----GVKPNEMTFTGVL 258 (400)
Q Consensus 195 ~~~~g~~~~A~~~~~~~~~----~~~-------~~~~~l~-~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~~l~ 258 (400)
.....++++|..++.+... |+. ..++.+- ......|++++|.++-+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 3456777777777766542 221 1233332 2234567778887777666543 1222344455566
Q ss_pred HHHHhcCChhhHHHHHHHhhhhcCCCCChh---hHHHHH--HHHHhcCChHHH--HHHHHhc-----cCCc----cHHHH
Q 048364 259 TACVHTGLVDEGRKYFKMIDEEYDLEPRIQ---HYGCMV--DLFGKAGFLEEA--YEVIRTM-----RLEP----NVIIW 322 (400)
Q Consensus 259 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~l~--~~~~~~g~~~~a--~~~~~~~-----~~~p----~~~~~ 322 (400)
.+..-.|++++|..+.....+. .-.-+.. .|..+. ..+..+|+...+ +..|... +-.| -..++
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 6666678888887777655432 1112222 222222 234455632222 2222222 1111 22334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCCCchH--HHHHHHHhhcccchHHHHHHHHHHhccccccccCccc
Q 048364 323 GSFLAACKEHKQFDMAERVIKQALRMVK---PENDGGV--FTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSV 394 (400)
Q Consensus 323 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 394 (400)
..+..++.+ .+.+..-.....+.+. |.+-... +..|+..+...|+.++|...+.++......+.+.+.|
T Consensus 584 ~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~ 657 (894)
T COG2909 584 AQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDY 657 (894)
T ss_pred HHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchH
Confidence 444444444 3333333333333221 2111112 2256667777788888888887777655555444444
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=86.56 E-value=5.6 Score=35.81 Aligned_cols=88 Identities=11% Similarity=0.096 Sum_probs=50.7
Q ss_pred HHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCC
Q 048364 223 ICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF 302 (400)
Q Consensus 223 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 302 (400)
...+...|+++.+...+...... +.....+..++++...+.|+++.|..+-+.|... .+ -++.........--..|-
T Consensus 330 ~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~-ei-e~~ei~~iaa~sa~~l~~ 406 (831)
T PRK15180 330 SVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSN-EI-EDEEVLTVAAGSADALQL 406 (831)
T ss_pred HHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhcc-cc-CChhheeeecccHHHHhH
Confidence 34455667777777766654432 3345566677777777777777777777766632 22 223333222233344566
Q ss_pred hHHHHHHHHhc
Q 048364 303 LEEAYEVIRTM 313 (400)
Q Consensus 303 ~~~a~~~~~~~ 313 (400)
++++...++..
T Consensus 407 ~d~~~~~wk~~ 417 (831)
T PRK15180 407 FDKSYHYWKRV 417 (831)
T ss_pred HHHHHHHHHHH
Confidence 67777777666
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=86.50 E-value=1.3 Score=23.15 Aligned_cols=28 Identities=14% Similarity=0.156 Sum_probs=25.2
Q ss_pred hHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 356 GVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 356 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
.+|..++..|...|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4688899999999999999999998876
|
... |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=86.46 E-value=28 Score=32.50 Aligned_cols=123 Identities=12% Similarity=0.196 Sum_probs=86.8
Q ss_pred CchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH--HhCCHHHHHHHHhhCCC---CChhhHHHHHH
Q 048364 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY--VVTSFGFARKLFDELPE---RNAVTWNTMIK 89 (400)
Q Consensus 15 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~g~~~~a~~~~~~~~~---~~~~~~~~l~~ 89 (400)
+-..++.|+.---.....+.+..++..++.. .|...-|-.-..-+ +.|..+.+.++|++... .+...|...+.
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLA 121 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3344566666655555667777777777653 46666555545555 89999999999998875 35666776666
Q ss_pred HHH-cCCChHHHHHHHhhCCCC------ChhhHHHHHHHHHhcCCcchHHHHHHHHH
Q 048364 90 GYS-KSGNVCEARDFFERMPLR------NVASWSAMIAAYLNAGAYDPGLKLFREMI 139 (400)
Q Consensus 90 ~~~-~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 139 (400)
.+. ..|+.+...+.|++...- +...|...|.--...+++.....+|+..+
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRil 178 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERIL 178 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 554 467788888888876522 44567777777777888999999999988
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=86.34 E-value=12 Score=28.03 Aligned_cols=50 Identities=8% Similarity=-0.025 Sum_probs=24.5
Q ss_pred ccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH--HhCCHHHHHHHHhhCCCC
Q 048364 28 HFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY--VVTSFGFARKLFDELPER 79 (400)
Q Consensus 28 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~g~~~~a~~~~~~~~~~ 79 (400)
..++++.+..+++.|.-. .|+..-...+-..+ ..|++++|..+|+++.+.
T Consensus 22 ~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 355666666666665543 23322222222222 556666666666666543
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=86.14 E-value=8.9 Score=26.37 Aligned_cols=61 Identities=21% Similarity=0.223 Sum_probs=40.1
Q ss_pred HHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHH
Q 048364 192 VDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFT 255 (400)
Q Consensus 192 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 255 (400)
+..+.+.|++++|..+.+....||...|-++-. .+.|..+++..-+.+|...| .|....|.
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 445667788888888887777777777766643 35666666666666666665 34444443
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division | Back alignment and domain information |
|---|
Probab=85.51 E-value=12 Score=27.35 Aligned_cols=44 Identities=7% Similarity=0.050 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHH
Q 048364 337 MAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKL 380 (400)
Q Consensus 337 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 380 (400)
.+..+|..|.+.++-...+..|..-+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 88899999999887556777888888888899999999988874
|
This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.49 E-value=39 Score=33.15 Aligned_cols=44 Identities=11% Similarity=0.138 Sum_probs=20.9
Q ss_pred HHHHHHhcCChHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHH
Q 048364 293 MVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDM 337 (400)
Q Consensus 293 l~~~~~~~g~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 337 (400)
++..+....+.+.+..+.+..+-. +...|..++..+++.+.++.
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~~-~p~l~~~~L~yF~~~~~i~~ 754 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGKE-DPSLWLHALKYFVSEESIED 754 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCcc-ChHHHHHHHHHHhhhcchhh
Confidence 344444455555555555554311 44445555555555554333
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.91 E-value=5.4 Score=33.81 Aligned_cols=98 Identities=11% Similarity=0.064 Sum_probs=65.7
Q ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHhccC-CCc-----ccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHH
Q 048364 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEE-RNV-----ISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFT 255 (400)
Q Consensus 182 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 255 (400)
..+..+...++..-....+.+.+...+-+++. |+. .+-.+.++.+. .-++++++.++..=...|+-||.+++.
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c 139 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFC 139 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchhhHH
Confidence 33444444455555556677777777766654 221 22223333333 345678888888878889999999999
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhhh
Q 048364 256 GVLTACVHTGLVDEGRKYFKMIDEE 280 (400)
Q Consensus 256 ~l~~~~~~~~~~~~a~~~~~~~~~~ 280 (400)
.+++.+.+.+++.+|.++.-.+..+
T Consensus 140 ~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 140 LLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999988877766643
|
|
| >COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.80 E-value=23 Score=29.89 Aligned_cols=25 Identities=4% Similarity=0.038 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHH
Q 048364 252 MTFTGVLTACVHTGLVDEGRKYFKM 276 (400)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~a~~~~~~ 276 (400)
..+..+..-|++.++.+.+.++..+
T Consensus 116 ea~~n~aeyY~qi~D~~ng~~~~~~ 140 (412)
T COG5187 116 EADRNIAEYYCQIMDIQNGFEWMRR 140 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 3444445555555555555554443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=84.74 E-value=27 Score=30.71 Aligned_cols=62 Identities=11% Similarity=0.012 Sum_probs=48.7
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHhccCC-------CcccHHHHHHHHHhCCChhhHHHHHHHHHH
Q 048364 183 LNEQIATILVDMYAKCGFLKYALMVFELMEER-------NVISWTALICGSAHRGYSEDALSLFEMMQA 244 (400)
Q Consensus 183 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 244 (400)
....++..++..+.+.|.++.|...+..+.+. .+...-.-+..+...|+..+|+..+++...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35567788888899999999999988888762 344555566778888999999999888776
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.59 E-value=32 Score=31.49 Aligned_cols=96 Identities=13% Similarity=0.196 Sum_probs=51.3
Q ss_pred CCHHHH-HHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHH---HhcCChHHHHHHHHhc--cCCccHHHH
Q 048364 249 PNEMTF-TGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF---GKAGFLEEAYEVIRTM--RLEPNVIIW 322 (400)
Q Consensus 249 p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~a~~~~~~~--~~~p~~~~~ 322 (400)
|+..|+ +.++.-+-+.+-..+|.+.+..+.. -.+|+...|..+|+.= ..+| ...+.++++.+ .+..|+..|
T Consensus 457 ~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~lw 533 (568)
T KOG2396|consen 457 ADSVTLKSKYLDWAYESGGYKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSDLW 533 (568)
T ss_pred CceeehhHHHHHHHHHhcchHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChHHH
Confidence 344333 3445555566666666666666653 3344555565555532 2233 55566666666 112455555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 048364 323 GSFLAACKEHKQFDMAERVIKQALR 347 (400)
Q Consensus 323 ~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (400)
...+.--...|..+.+-.++.++.+
T Consensus 534 ~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 534 MDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHhhccCCCcccccHHHHHHHH
Confidence 5555555566666666666655554
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.39 E-value=19 Score=28.61 Aligned_cols=94 Identities=14% Similarity=0.109 Sum_probs=63.0
Q ss_pred HHHHHhCCChhhHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCC-hhhHHHHHHH
Q 048364 223 ICGSAHRGYSEDALSLFEMMQATGVKPNE-----MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR-IQHYGCMVDL 296 (400)
Q Consensus 223 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~ 296 (400)
..-+.+.|++++|..-|.+.+.. +++.. ..|..-..++.+.+.++.|+.--.+.. .+.|+ ......-..+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKai---el~pty~kAl~RRAea 177 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAI---ELNPTYEKALERRAEA 177 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhH---hcCchhHHHHHHHHHH
Confidence 34577889999999999998886 34433 234444556778888888877666665 23342 2223333457
Q ss_pred HHhcCChHHHHHHHHhc-cCCccHH
Q 048364 297 FGKAGFLEEAYEVIRTM-RLEPNVI 320 (400)
Q Consensus 297 ~~~~g~~~~a~~~~~~~-~~~p~~~ 320 (400)
|-+...+++|++=|..+ ...|...
T Consensus 178 yek~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcchH
Confidence 88888899999888888 5566554
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=84.35 E-value=2.7 Score=23.92 Aligned_cols=24 Identities=25% Similarity=0.148 Sum_probs=14.5
Q ss_pred HHHHHHhCCChhhHHHHHHHHHHC
Q 048364 222 LICGSAHRGYSEDALSLFEMMQAT 245 (400)
Q Consensus 222 l~~~~~~~~~~~~a~~~~~~m~~~ 245 (400)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 455566666666666666666544
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF14669 Asp_Glu_race_2: Putative aspartate racemase | Back alignment and domain information |
|---|
Probab=84.02 E-value=19 Score=28.30 Aligned_cols=64 Identities=11% Similarity=0.114 Sum_probs=34.5
Q ss_pred CCCCCCchhHHHHHHHhcccc----hhHHHHHHHHHHHHhCcccc----hhhhhHHHHHH-HhCCHHHHHHHH
Q 048364 10 QSVPSDSFSILHILKSCTHFN----NLTVIHHLHSHILKLGFISH----VYVATSLLHEY-VVTSFGFARKLF 73 (400)
Q Consensus 10 ~g~~p~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~-~~g~~~~a~~~~ 73 (400)
.|.-++...++-++..+.+.. +.+.+..+=.+....++.++ ......-+..| +.||+..--.+|
T Consensus 2 AGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly 74 (233)
T PF14669_consen 2 AGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLY 74 (233)
T ss_pred CcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHH
Confidence 477788888888877776543 44444444444444444432 22222333344 566665544444
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=83.58 E-value=11 Score=29.97 Aligned_cols=78 Identities=12% Similarity=0.174 Sum_probs=52.0
Q ss_pred HHHhcCChHHHHHHHHhc---cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCCchHHHHHHHHhhcccc
Q 048364 296 LFGKAGFLEEAYEVIRTM---RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKP--ENDGGVFTLICDLYTMNEK 370 (400)
Q Consensus 296 ~~~~~g~~~~a~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~ 370 (400)
.+.+.|+ +.|.+.|-.+ +.--++.....+.. |....+.+++..++.++.+...+ .+++..+..|+..|.+.|+
T Consensus 116 ~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 116 HWSRFGD-QEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred HhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 3445555 4566666666 22224444444444 44466888999999888886532 3578899999999999998
Q ss_pred hHHHH
Q 048364 371 WEGAE 375 (400)
Q Consensus 371 ~~~a~ 375 (400)
++.|-
T Consensus 194 ~e~AY 198 (203)
T PF11207_consen 194 YEQAY 198 (203)
T ss_pred hhhhh
Confidence 88874
|
|
| >cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat | Back alignment and domain information |
|---|
Probab=83.52 E-value=8.6 Score=25.66 Aligned_cols=65 Identities=11% Similarity=0.089 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCCCChhhHHHHHHHHHcCCChHHHH
Q 048364 35 IHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEAR 101 (400)
Q Consensus 35 a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 101 (400)
+.++++.+.+.|+- +......+-.+- ..|+.+.|.+++..++ +.+..|..++.++-..|+-+-|.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 44566666666643 222223332322 4566777777777777 66666777777776666654443
|
Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=83.11 E-value=83 Score=35.10 Aligned_cols=147 Identities=10% Similarity=0.028 Sum_probs=87.2
Q ss_pred HHHHHhcccchhHHHHHHHHHHHHhCc--ccchhhhhHHHHHH-HhCCHHHHHHHHhh-CCCCChhhHHHHHHHHHcCCC
Q 048364 21 HILKSCTHFNNLTVIHHLHSHILKLGF--ISHVYVATSLLHEY-VVTSFGFARKLFDE-LPERNAVTWNTMIKGYSKSGN 96 (400)
Q Consensus 21 ~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~-~~g~~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 96 (400)
.+..+--+.+.+..|...++.-..... .-....+-.+...| .-+++|....+... ...|+. ..-|-.....|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhcc
Confidence 344455577888888888887311111 11222333444467 77777777776663 323322 233445677899
Q ss_pred hHHHHHHHhhCCC--CC-hhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHH-HHHHHHhhcccchhhhhhhhh
Q 048364 97 VCEARDFFERMPL--RN-VASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTI-GAVLSGCSHLGSVGLLMGKSA 172 (400)
Q Consensus 97 ~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-~~ll~~~~~~~~~~~~~a~~~ 172 (400)
++.|...|+++.. |+ ..+++-++......|.++.++...+-.. . ...+....+ +.-+.+--+.++++. ....
T Consensus 1465 ~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~-~-~~se~~~~~~s~~~eaaW~l~qwD~--~e~~ 1540 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLI-I-NRSEEVDELNSLGVEAAWRLSQWDL--LESY 1540 (2382)
T ss_pred HHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchh-h-ccCHHHHHHHHHHHHHHhhhcchhh--hhhh
Confidence 9999999999873 33 5578877777777888888877665554 2 222333333 333444456667766 4444
Q ss_pred hh
Q 048364 173 HG 174 (400)
Q Consensus 173 ~~ 174 (400)
+.
T Consensus 1541 l~ 1542 (2382)
T KOG0890|consen 1541 LS 1542 (2382)
T ss_pred hh
Confidence 43
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=82.78 E-value=52 Score=32.54 Aligned_cols=180 Identities=14% Similarity=0.053 Sum_probs=94.7
Q ss_pred hcCCHHHHHHHHHhccC--------CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHH---HHH--HHHHh
Q 048364 197 KCGFLKYALMVFELMEE--------RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFT---GVL--TACVH 263 (400)
Q Consensus 197 ~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~---~l~--~~~~~ 263 (400)
..|+++.|.++.+...+ .....+..+..+..-.|++++|..+..+..+.--..+...+. .+. ..+..
T Consensus 470 ~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~ 549 (894)
T COG2909 470 NRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEA 549 (894)
T ss_pred hcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 45777777777665543 244566677777788889988888877665432222333222 222 22445
Q ss_pred cCC--hhhHHHHHHHhhhhcCCCCC-----hhhHHHHHHHHHhcCChHHHHHHHHhc-----cCCcc--HH--HHHHHHH
Q 048364 264 TGL--VDEGRKYFKMIDEEYDLEPR-----IQHYGCMVDLFGKAGFLEEAYEVIRTM-----RLEPN--VI--IWGSFLA 327 (400)
Q Consensus 264 ~~~--~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~-----~~~p~--~~--~~~~l~~ 327 (400)
.|+ ..+....+............ ..++..+..++.+ .+.+..-.... ...|. .. .+..|+.
T Consensus 550 qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~ 626 (894)
T COG2909 550 QGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAE 626 (894)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHH
Confidence 563 23333344433322111111 2233334444444 44433333222 11222 12 2236777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCCchH----HHHHHH--HhhcccchHHHHHHHHH
Q 048364 328 ACKEHKQFDMAERVIKQALRMVKPENDGGV----FTLICD--LYTMNEKWEGAERVRKL 380 (400)
Q Consensus 328 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~~l~~--~~~~~g~~~~a~~~~~~ 380 (400)
.....|+.++|...++++...... +.... ....+. .-...|+.+.+...+.+
T Consensus 627 l~~~~Gdl~~A~~~l~~~~~l~~~-~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 627 LEFLRGDLDKALAQLDELERLLLN-GQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcC-CCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 888899999999999998886631 22221 112222 23467888888776665
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.95 E-value=5.6 Score=33.35 Aligned_cols=60 Identities=13% Similarity=-0.024 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHh
Q 048364 321 IWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLML 382 (400)
Q Consensus 321 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 382 (400)
+++...+.|...|.+.+|.++.++.+..+ | .+...+..|+..+...|+--.+.+-++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-p-L~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-P-LSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-h-hhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34555678889999999999999999999 8 888999999999999999777777777664
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=81.47 E-value=32 Score=29.25 Aligned_cols=79 Identities=9% Similarity=-0.001 Sum_probs=48.9
Q ss_pred ccchhhhhHHHHHH-HhCCHHHHHHHHhhCCCCChhhHHHHHHHHHcCCCh----HHHHHHHhhC--CCCChhhHHHHHH
Q 048364 48 ISHVYVATSLLHEY-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNV----CEARDFFERM--PLRNVASWSAMIA 120 (400)
Q Consensus 48 ~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~--~~~~~~~~~~l~~ 120 (400)
.+|..+....+..+ ..|..+....+.+-...+|...-...+.++.+.|+. +++...+..+ ..++...-...+.
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR~~A~~ 113 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACVRASAIN 113 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 35666666677777 666544444444434456777777778888888763 4677777765 3566666555565
Q ss_pred HHHhcC
Q 048364 121 AYLNAG 126 (400)
Q Consensus 121 ~~~~~g 126 (400)
++...+
T Consensus 114 aLG~~~ 119 (280)
T PRK09687 114 ATGHRC 119 (280)
T ss_pred HHhccc
Confidence 555543
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.24 E-value=3 Score=33.31 Aligned_cols=86 Identities=17% Similarity=0.226 Sum_probs=60.2
Q ss_pred HHhcCChhhHHHHHHHhhhhcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHhc-cCCccH--HHHHHHHHHHHhcCCHH
Q 048364 261 CVHTGLVDEGRKYFKMIDEEYDLEPR-IQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNV--IIWGSFLAACKEHKQFD 336 (400)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~--~~~~~l~~~~~~~~~~~ 336 (400)
|-..|-+.-|.-=|.+.. .+.|+ +.+||.+.--+...|+++.|.+.|+.. .+.|.- ...|.-| ++.-.|++.
T Consensus 75 YDSlGL~~LAR~DftQaL---ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~ 150 (297)
T COG4785 75 YDSLGLRALARNDFSQAL---AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYK 150 (297)
T ss_pred hhhhhHHHHHhhhhhhhh---hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchH
Confidence 455666777766666665 45565 567888888888999999999999987 666632 2233322 344568899
Q ss_pred HHHHHHHHHHHcCCC
Q 048364 337 MAERVIKQALRMVKP 351 (400)
Q Consensus 337 ~a~~~~~~~~~~~~~ 351 (400)
.|.+-+...-..+ |
T Consensus 151 LAq~d~~~fYQ~D-~ 164 (297)
T COG4785 151 LAQDDLLAFYQDD-P 164 (297)
T ss_pred hhHHHHHHHHhcC-C
Confidence 9988888877777 6
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=81.03 E-value=4.7 Score=19.78 Aligned_cols=28 Identities=18% Similarity=0.095 Sum_probs=15.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 322 WGSFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 322 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
|..+...+...|+++.|...+++.++..
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 4444555555566666666665555443
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=80.57 E-value=11 Score=31.76 Aligned_cols=60 Identities=20% Similarity=0.108 Sum_probs=40.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 322 WGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 322 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
.+.+-.+|.+.++++.|.+..+.+.... | .++.-+.--+..|.+.|.+..|..=++..++
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~-P-~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFD-P-EDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 3445556677777777777777777777 6 6666666666667777777777666655544
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.52 E-value=7.2 Score=31.74 Aligned_cols=102 Identities=17% Similarity=0.158 Sum_probs=67.1
Q ss_pred HHhcCChhhHHHHHHHhhhhcCCCCCh-hhHHHHHHHHHhcCChHHHHHHHHhc-cCCccHHHHHH-HHHHHHhcCCHHH
Q 048364 261 CVHTGLVDEGRKYFKMIDEEYDLEPRI-QHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNVIIWGS-FLAACKEHKQFDM 337 (400)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~~~~~~-l~~~~~~~~~~~~ 337 (400)
|....+++.|+..|.+.. .+.|+. .-|..-+.++.+..+++.+..=-.+. .+.||..--.. +..+......+++
T Consensus 20 ~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 555667888888777776 446766 45667777888888888887665555 77787664433 4445667778899
Q ss_pred HHHHHHHHHHcCC---CCCCchHHHHHHHHh
Q 048364 338 AERVIKQALRMVK---PENDGGVFTLICDLY 365 (400)
Q Consensus 338 a~~~~~~~~~~~~---~~~~~~~~~~l~~~~ 365 (400)
|+..+.++.+... +.+.......|..+-
T Consensus 97 aI~~Lqra~sl~r~~~~~~~~di~~~L~~ak 127 (284)
T KOG4642|consen 97 AIKVLQRAYSLLREQPFTFGDDIPKALRDAK 127 (284)
T ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Confidence 9999888865432 223444445554443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 55.2 bits (131), Expect = 2e-08
Identities = 17/137 (12%), Positives = 47/137 (34%), Gaps = 7/137 (5%)
Query: 191 LVDMYAKCGFLKYALMVFELMEER-------NVISWTALICGSAHRGYSEDALSLFEMMQ 243
L A + + + + + A++ G A +G ++ + + M++
Sbjct: 133 FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK 192
Query: 244 ATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFL 303
G+ P+ +++ L + + L+ + ++ +A L
Sbjct: 193 DAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVL 252
Query: 304 EEAYEVIRTMRLEPNVI 320
+ ++V T L P +
Sbjct: 253 KAVHKVKPTFSLPPQLP 269
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 54.8 bits (130), Expect = 3e-08
Identities = 40/292 (13%), Positives = 81/292 (27%), Gaps = 24/292 (8%)
Query: 114 SWSAMIAAYLNAGAYDPGLKL---FREMISNEGLTPDQMTIGAVLSGCSHLGSVG----L 166
W +A L L + S L+ Q + A C + L
Sbjct: 90 PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149
Query: 167 LMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEER----NVISWTAL 222
L+ + L + ++ +A+ G K + V ++++ +++S+ A
Sbjct: 150 LVVHHGQR---QKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206
Query: 223 ICGSAHRG-YSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEY 281
+ + + E M G+K + +L+ ++ K
Sbjct: 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPP 266
Query: 282 DLEPRIQHYGCMVDLFGKAG-FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAER 340
L P + + D++ K G + LA+ +
Sbjct: 267 QLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTL 326
Query: 341 VIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGS 392
K+ K + A R K L + V + R S
Sbjct: 327 PSKEVKHARKTLKTL--------RDQWEKALCRALRETKNRLEREVYEGRFS 370
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 41.0 bits (94), Expect = 7e-04
Identities = 12/118 (10%), Positives = 32/118 (27%), Gaps = 13/118 (11%)
Query: 38 LHSHILKLGFISHVYVATSLLHEYVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNV 97
L + + +A LL + + +N ++ G+++ G
Sbjct: 130 LLAFFKCCLLTDQLPLAHHLLVVH--------HGQRQKRKLLTLDMYNAVMLGWARQGAF 181
Query: 98 CEARDFFERMPLR----NVASWSAMIAAYLNAGAYDPGL-KLFREMISNEGLTPDQMT 150
E + ++ S++A + + + +M T
Sbjct: 182 KELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFT 239
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 44.0 bits (103), Expect = 4e-05
Identities = 36/275 (13%), Positives = 85/275 (30%), Gaps = 23/275 (8%)
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI-V 177
+ G+Y + + + +P++ V ++L K +
Sbjct: 6 VKNAFYIGSYQQCINEAQRVKP---SSPERDVERDVFLYRAYLA-----QRKYGVVLDEI 57
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVIS---WTALICGSA--HRGYS 232
K Q + + A + + R+V L+ S +
Sbjct: 58 KPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNP 117
Query: 233 EDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGC 292
+ AL + + + +D RK K + ++ + Q
Sbjct: 118 DAALRTLHQGDSLECMAMT------VQILLKLDRLDLARKELKKMQDQDEDATLTQLATA 171
Query: 293 MVDLFGKAGFLEEAYEVIRTM--RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVK 350
V L L++AY + + M + P +++ A +++ AE V+++AL
Sbjct: 172 WVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK-D 230
Query: 351 PENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQN 385
+ + L+ + + E R + + +
Sbjct: 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 400 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.92 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.89 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.88 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.87 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.85 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.85 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.85 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.84 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.83 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.83 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.81 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.81 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.81 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.8 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.8 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.8 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.8 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.79 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.76 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.76 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.75 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.74 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.74 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.73 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.72 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.71 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.7 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.7 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.68 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.67 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.66 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.64 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.64 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.64 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.64 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.63 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.63 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.63 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.63 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.63 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.62 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.62 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.62 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.62 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.61 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.61 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.61 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.6 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.59 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.57 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.57 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.57 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.55 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.54 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.54 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.53 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.5 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.49 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.48 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.47 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.45 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.44 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.44 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.42 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.42 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.41 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.41 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.39 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.38 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.38 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.37 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.33 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.33 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.29 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.27 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.26 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.25 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.25 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.24 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.22 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.21 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.16 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.16 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.15 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.15 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.14 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.12 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.09 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.08 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.06 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.05 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.05 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.04 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.03 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.03 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.01 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.0 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.99 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.99 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.98 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.97 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.96 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.96 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.95 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.94 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.93 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.91 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.9 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.9 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.9 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.84 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.84 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.83 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.82 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.82 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.81 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.79 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.78 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.78 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.76 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.75 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.74 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.73 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.73 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.72 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.71 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.71 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.7 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.69 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.69 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.67 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.66 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.65 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.65 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.65 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.64 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.62 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.61 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.61 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.61 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.61 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.6 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.59 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.58 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.58 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.58 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.57 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.56 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.54 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.53 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.52 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.52 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.52 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.51 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.5 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.49 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.47 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.47 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.47 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.45 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.45 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.44 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.44 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.42 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.41 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.38 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.38 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.34 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.34 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.33 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.32 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.32 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.29 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.28 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.25 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.22 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.21 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.16 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.15 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.14 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.12 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.09 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.08 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.0 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.0 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.0 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.99 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.94 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.84 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.83 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.77 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.76 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.76 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.71 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.58 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.58 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.58 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.57 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.54 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 97.47 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.39 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.39 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.31 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.27 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 97.27 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.24 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.13 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.08 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.01 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.89 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.88 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.83 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.78 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.71 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.52 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.47 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.43 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.3 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.24 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.97 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.49 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.36 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 95.15 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.99 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.95 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.7 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.66 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.49 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 94.37 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.98 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 93.77 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 93.54 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 93.2 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 93.2 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.18 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 92.34 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 92.09 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 92.09 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 91.99 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 91.04 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 91.02 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 90.86 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 90.83 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 90.8 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 89.52 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 89.38 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 89.37 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 89.0 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 88.89 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 88.8 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 88.65 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 87.97 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 87.59 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 87.53 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 87.23 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 86.78 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 85.89 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 85.53 | |
| 4a1g_A | 152 | Mitotic checkpoint serine/threonine-protein kinas; | 84.71 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 84.47 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 83.17 | |
| 2wvi_A | 164 | Mitotic checkpoint serine/threonine-protein kinase | 82.64 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 82.36 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 81.11 | |
| 1wdy_A | 285 | 2-5A-dependent ribonuclease; hydrolase, RNA-bindin | 80.01 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-36 Score=280.41 Aligned_cols=362 Identities=12% Similarity=0.018 Sum_probs=267.2
Q ss_pred CCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCC--CCChhhHHHHHHH
Q 048364 14 SDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELP--ERNAVTWNTMIKG 90 (400)
Q Consensus 14 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~--~~~~~~~~~l~~~ 90 (400)
++...|+.++..+.+.|++++|.++|+++.+ ..|+..++..+...+ ..|++++|..+|+.+. .++..+++.++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 4555666666666666666666666666664 334545566666666 6666666666666663 3456666666666
Q ss_pred HHcCCChHHHHHHHhhCCCC-------------------ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCC--------
Q 048364 91 YSKSGNVCEARDFFERMPLR-------------------NVASWSAMIAAYLNAGAYDPGLKLFREMISNEG-------- 143 (400)
Q Consensus 91 ~~~~~~~~~a~~~~~~~~~~-------------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-------- 143 (400)
|.+.|++++|.++|+++.+. +..+|+.++.+|.+.|++++|+++|++|.+...
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 239 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQ 239 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHH
Confidence 66666666666666643322 255666666666666666666666666542110
Q ss_pred -------------------------------------------------------------CCCCHHHHHHHHHHhhccc
Q 048364 144 -------------------------------------------------------------LTPDQMTIGAVLSGCSHLG 162 (400)
Q Consensus 144 -------------------------------------------------------------~~p~~~~~~~ll~~~~~~~ 162 (400)
.+++..++..++.++.+.|
T Consensus 240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g 319 (597)
T 2xpi_A 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRS 319 (597)
T ss_dssp HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTT
T ss_pred HHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhc
Confidence 1255666777777777777
Q ss_pred chhhhhhhhhhhHHHhccc---------------------------------cchHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048364 163 SVGLLMGKSAHGFIVKNEW---------------------------------ELNEQIATILVDMYAKCGFLKYALMVFE 209 (400)
Q Consensus 163 ~~~~~~a~~~~~~~~~~~~---------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 209 (400)
++++ |..+++.+.+.+. +.+..+++.++.+|.+.|++++|.++|+
T Consensus 320 ~~~~--A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 397 (597)
T 2xpi_A 320 RFID--VLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFS 397 (597)
T ss_dssp CHHH--HHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHH--HHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 7777 6666666654331 2356677888888888899999988888
Q ss_pred hccC---CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCC
Q 048364 210 LMEE---RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR 286 (400)
Q Consensus 210 ~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 286 (400)
++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+.+.+. .+.+
T Consensus 398 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~ 474 (597)
T 2xpi_A 398 KSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYD 474 (597)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC
Confidence 8764 356688889999999999999999999988764 347788888999999999999999999998853 2446
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhc-------cCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchH
Q 048364 287 IQHYGCMVDLFGKAGFLEEAYEVIRTM-------RLEPN--VIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357 (400)
Q Consensus 287 ~~~~~~l~~~~~~~g~~~~a~~~~~~~-------~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 357 (400)
..+|+.++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|++++|...++++.+.+ | .+..+
T Consensus 475 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p-~~~~~ 552 (597)
T 2xpi_A 475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-T-NDANV 552 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-S-CCHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-C-CChHH
Confidence 788999999999999999999999888 33676 6789999999999999999999999999988 7 78899
Q ss_pred HHHHHHHhhcccchHHHHHHHHHHhcc
Q 048364 358 FTLICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 358 ~~~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
|..++.+|.+.|++++|.+.++++.+.
T Consensus 553 ~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 553 HTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 999999999999999999999988763
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-35 Score=278.13 Aligned_cols=348 Identities=11% Similarity=0.013 Sum_probs=277.5
Q ss_pred hcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCC--CCChhhHHHHHHHHHcCCChHHHHH
Q 048364 26 CTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELP--ERNAVTWNTMIKGYSKSGNVCEARD 102 (400)
Q Consensus 26 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~ 102 (400)
+...|.+..+...+..+ ..++...|+.++..+ +.|++++|..+|+++. .|+..++..++.+|.+.|++++|..
T Consensus 63 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTD----SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccccCccCCCCCccccc----hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHH
Confidence 34455566665555433 346888999999999 9999999999999987 4788899999999999999999999
Q ss_pred HHhhCC--CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcC--------------CCCCCHHHHHHHHHHhhcccchhh
Q 048364 103 FFERMP--LRNVASWSAMIAAYLNAGAYDPGLKLFREMISNE--------------GLTPDQMTIGAVLSGCSHLGSVGL 166 (400)
Q Consensus 103 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~--------------~~~p~~~~~~~ll~~~~~~~~~~~ 166 (400)
+|+++. .++..+++.++.+|.+.|++++|.++|+++.... +.+++..+|+.++.+|.+.|++++
T Consensus 139 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 139 LLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 999984 6789999999999999999999999998643122 234568899999999999999999
Q ss_pred hhhhhhhhHHHhccc-----------------------------------------------------------------
Q 048364 167 LMGKSAHGFIVKNEW----------------------------------------------------------------- 181 (400)
Q Consensus 167 ~~a~~~~~~~~~~~~----------------------------------------------------------------- 181 (400)
|...++.+.+.+.
T Consensus 219 --A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 219 --AKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp --HHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 8888888765432
Q ss_pred -----cchHHHHHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHH
Q 048364 182 -----ELNEQIATILVDMYAKCGFLKYALMVFELMEE---RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMT 253 (400)
Q Consensus 182 -----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 253 (400)
+++..+++.++.+|.+.|++++|.++|+++.+ .+..+++.++.++.+.|++++|..+++++.+.. +.+..+
T Consensus 297 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 375 (597)
T 2xpi_A 297 SINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVT 375 (597)
T ss_dssp TSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHH
T ss_pred HhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHH
Confidence 15566777788888888888888888887764 356678888888888888888888888887542 446788
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHh
Q 048364 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKE 331 (400)
Q Consensus 254 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~ 331 (400)
+..++.+|.+.|++++|.++|+++.+. .+.+..+|+.++.+|.+.|++++|.++|+++ ...| +..+|..++.+|.+
T Consensus 376 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 453 (597)
T 2xpi_A 376 WLAVGIYYLCVNKISEARRYFSKSSTM--DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQ 453 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 888999999999999999999988852 2345778999999999999999999999988 4344 67889999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhcc
Q 048364 332 HKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 332 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
.|++++|.++|+++.+.. | .++.+|..++.+|.+.|++++|.++|+++.+.
T Consensus 454 ~g~~~~A~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 454 LGNILLANEYLQSSYALF-Q-YDPLLLNELGVVAFNKSDMQTAINHFQNALLL 504 (597)
T ss_dssp HTCHHHHHHHHHHHHHHC-C-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-C-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999988 7 78899999999999999999999999998875
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=6.1e-31 Score=238.54 Aligned_cols=184 Identities=16% Similarity=0.171 Sum_probs=151.1
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccc---------hhhhhhhhhhhHHHhccccc
Q 048364 113 ASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGS---------VGLLMGKSAHGFIVKNEWEL 183 (400)
Q Consensus 113 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~---------~~~~~a~~~~~~~~~~~~~~ 183 (400)
..++.+|.+|++.|++++|+++|++|. ..|+.||..||+++|.+|++.+. ++. |..+++.|.+.|+.|
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~-~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~--A~~lf~~M~~~G~~P 103 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEAR-RNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR--GFDIFKQMIVDKVVP 103 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHH-HHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH--HHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH--HHHHHHHHHHhCCCC
Confidence 457777888888888888888888888 67888888888888888876554 455 777888888888888
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHhccC----CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048364 184 NEQIATILVDMYAKCGFLKYALMVFELMEE----RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLT 259 (400)
Q Consensus 184 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 259 (400)
|..+|++|+.+|++.|++++|.++|++|.+ ||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+++|.
T Consensus 104 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~ 183 (501)
T 4g26_A 104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLK 183 (501)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 888888888888888888888888888864 6888888888888888888888888888888888888888888888
Q ss_pred HHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhc
Q 048364 260 ACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300 (400)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 300 (400)
+|++.|++++|.+++++|.+ .+..|+..||+.++..|+..
T Consensus 184 ~~~~~g~~d~A~~ll~~Mr~-~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 184 VSMDTKNADKVYKTLQRLRD-LVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHTTCHHHHHHHHHHHHH-HTSSBCHHHHHHHHHHHHSH
T ss_pred HHhhCCCHHHHHHHHHHHHH-hCCCcCHHHHHHHHHHHhcC
Confidence 88888888888888888884 48888888888888877653
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=5.1e-28 Score=215.35 Aligned_cols=350 Identities=12% Similarity=0.085 Sum_probs=300.2
Q ss_pred HHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCC---CChhhHHHHHHHHHcCCCh
Q 048364 22 ILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPE---RNAVTWNTMIKGYSKSGNV 97 (400)
Q Consensus 22 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 97 (400)
+...+.+.|++++|.+.++.+.+..+. +...+..+...+ ..|++++|...++...+ .+..+|..+..++.+.|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 345667889999999999999886533 344555556666 99999999999988763 4677899999999999999
Q ss_pred HHHHHHHhhCC--CC-ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCH-HHHHHHHHHhhcccchhhhhhhhhh
Q 048364 98 CEARDFFERMP--LR-NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQ-MTIGAVLSGCSHLGSVGLLMGKSAH 173 (400)
Q Consensus 98 ~~a~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~ll~~~~~~~~~~~~~a~~~~ 173 (400)
++|++.|+++. .| +..+|..+..++.+.|++++|.+.|+++.+ ..|+. ..+..+...+...|++++ |...+
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~--A~~~~ 158 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ---YNPDLYCVRSDLGNLLKALGRLEE--AKACY 158 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH---HCTTCTHHHHHHHHHHHTTSCHHH--HHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHccCHHH--HHHHH
Confidence 99999999876 34 567899999999999999999999999983 35654 456778888899999999 99999
Q ss_pred hHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC
Q 048364 174 GFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE--R-NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPN 250 (400)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 250 (400)
..+.+.. +.+..++..+..+|...|++++|...|+++.+ | +...|..+...+...|++++|...+++..... +.+
T Consensus 159 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~ 236 (388)
T 1w3b_A 159 LKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNH 236 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTC
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCC
Confidence 9988764 33577889999999999999999999999875 3 45678888999999999999999999988763 235
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cC-CccHHHHHHHHHH
Q 048364 251 EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RL-EPNVIIWGSFLAA 328 (400)
Q Consensus 251 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~-~p~~~~~~~l~~~ 328 (400)
..++..+..++...|++++|...++++.+. .+.+..+|..++.++.+.|++++|.+.|+++ .. +++..++..+...
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence 788999999999999999999999999853 2345678999999999999999999999998 33 4477899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 329 CKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 329 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
+...|++++|...++++.+.. | .+..++..++.+|.+.|++++|.+.++++.+
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVF-P-EFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSC-T-TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHhcC-C-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999999999988 8 7889999999999999999999999999986
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-30 Score=237.11 Aligned_cols=212 Identities=18% Similarity=0.226 Sum_probs=170.3
Q ss_pred HHHHHHHHHhcCCCCCCH-HHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048364 131 GLKLFREMISNEGLTPDQ-MTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFE 209 (400)
Q Consensus 131 a~~~~~~m~~~~~~~p~~-~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 209 (400)
+..+.+++. +.+..+.+ ..++.+|.+|++.|++++ |.++++.|.+.|+.||..+|++||.+|++.+....+
T Consensus 9 ~e~L~~~~~-~k~~~~spe~~l~~~id~c~k~G~~~~--A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~----- 80 (501)
T 4g26_A 9 SENLSRKAK-KKAIQQSPEALLKQKLDMCSKKGDVLE--ALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES----- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHH--HHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-----
T ss_pred HHHHHHHHH-HhcccCCCHHHHHHHHHHHHhCCCHHH--HHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-----
Confidence 344445555 44554433 357777888888888888 888888888888888888888888887766653221
Q ss_pred hccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhh
Q 048364 210 LMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQH 289 (400)
Q Consensus 210 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 289 (400)
.+.+..+.|.++|++|...|+.||..||+++|.+|++.|++++|.++|++|.+ .|+.||..+
T Consensus 81 -----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~-~g~~Pd~~t 142 (501)
T 4g26_A 81 -----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKA-FGIQPRLRS 142 (501)
T ss_dssp -----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-TTCCCCHHH
T ss_pred -----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCccce
Confidence 23345688999999999999999999999999999999999999999999984 499999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhc---cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhh
Q 048364 290 YGCMVDLFGKAGFLEEAYEVIRTM---RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYT 366 (400)
Q Consensus 290 ~~~l~~~~~~~g~~~~a~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 366 (400)
|+.+|.+|++.|++++|.++|++| |+.||..||++||.+|++.|++++|.+++++|.+.+ ..|+..||..+...|.
T Consensus 143 yn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g-~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 143 YGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLV-RQVSKSTFDMIEEWFK 221 (501)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SSBCHHHHHHHHHHHH
T ss_pred ehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhC-CCcCHHHHHHHHHHHh
Confidence 999999999999999999999999 899999999999999999999999999999999999 4489999999999887
Q ss_pred ccc
Q 048364 367 MNE 369 (400)
Q Consensus 367 ~~g 369 (400)
..+
T Consensus 222 s~~ 224 (501)
T 4g26_A 222 SEV 224 (501)
T ss_dssp SHH
T ss_pred cCc
Confidence 643
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.6e-27 Score=209.17 Aligned_cols=355 Identities=12% Similarity=0.074 Sum_probs=302.8
Q ss_pred hhHHHHhCCCCCCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCC--C
Q 048364 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPE--R 79 (400)
Q Consensus 3 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~--~ 79 (400)
.++.+.+.. |.+...+..+...+...|++++|...++...+..+ .+...|..+...+ ..|++++|...|+++.+ |
T Consensus 21 ~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 98 (388)
T 1w3b_A 21 HCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP 98 (388)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCc
Confidence 344444332 33456677777888899999999999999988653 3677899999999 99999999999998863 4
Q ss_pred -ChhhHHHHHHHHHcCCChHHHHHHHhhCC--CC-ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCC-CHHHHHHH
Q 048364 80 -NAVTWNTMIKGYSKSGNVCEARDFFERMP--LR-NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTP-DQMTIGAV 154 (400)
Q Consensus 80 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l 154 (400)
+..+|..+..++.+.|++++|.+.|+++. .| +...+..+...+...|++++|.+.|+++.+. .| +..++..+
T Consensus 99 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l 175 (388)
T 1w3b_A 99 DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET---QPNFAVAWSNL 175 (388)
T ss_dssp TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence 45679999999999999999999999876 34 4567888889999999999999999999832 44 46789999
Q ss_pred HHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CcccHHHHHHHHHhCCC
Q 048364 155 LSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE--R-NVISWTALICGSAHRGY 231 (400)
Q Consensus 155 l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~ 231 (400)
...+...|+++. |...++.+.+... .+...+..+...+...|++++|...|++..+ | +..++..+...+...|+
T Consensus 176 ~~~~~~~g~~~~--A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 252 (388)
T 1w3b_A 176 GCVFNAQGEIWL--AIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGL 252 (388)
T ss_dssp HHHHHTTTCHHH--HHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHH--HHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCC
Confidence 999999999999 9999999988753 3567888999999999999999999998865 3 46788999999999999
Q ss_pred hhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 048364 232 SEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIR 311 (400)
Q Consensus 232 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 311 (400)
+++|+..|+++.+.+ +.+..++..+..++.+.|++++|...++++.+. .+.+..++..+...+.+.|++++|.+.++
T Consensus 253 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 329 (388)
T 1w3b_A 253 IDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYR 329 (388)
T ss_dssp HHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999864 235678999999999999999999999999963 35678899999999999999999999999
Q ss_pred hc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccc
Q 048364 312 TM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEK 370 (400)
Q Consensus 312 ~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 370 (400)
++ ...| +..++..+..++.+.|++++|...++++++.. | ....++..+...+...|+
T Consensus 330 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p-~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 330 KALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-P-TFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-T-TCHHHHHHHHHHHHHTCC
T ss_pred HHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-C-CCHHHHHhHHHHHHHccC
Confidence 98 5555 57789999999999999999999999999988 8 788899998888776653
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-25 Score=205.10 Aligned_cols=357 Identities=9% Similarity=-0.042 Sum_probs=293.4
Q ss_pred hhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHH
Q 048364 17 FSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPE--R-NAVTWNTMIKGYS 92 (400)
Q Consensus 17 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~ 92 (400)
..+......+.+.|++++|.+.|+++++.. |+...+..+..++ ..|++++|...++++.+ | +..+|..+..++.
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 456677778888899999999999998865 5778888888888 99999999999988763 3 5668888889999
Q ss_pred cCCChHHHHHHHhhCCC--C-C----------------------------------------------------------
Q 048364 93 KSGNVCEARDFFERMPL--R-N---------------------------------------------------------- 111 (400)
Q Consensus 93 ~~~~~~~a~~~~~~~~~--~-~---------------------------------------------------------- 111 (400)
+.|++++|...|+++.. | +
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 99999999988877531 1 1
Q ss_pred ---------------------hhhHHHHHHHHHh---cCCcchHHHHHHHHHh-----cCCC-------CCCHHHHHHHH
Q 048364 112 ---------------------VASWSAMIAAYLN---AGAYDPGLKLFREMIS-----NEGL-------TPDQMTIGAVL 155 (400)
Q Consensus 112 ---------------------~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~-----~~~~-------~p~~~~~~~ll 155 (400)
...+......+.. .|++++|+.+|+++.+ .... +.+..++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 2233333334443 8999999999999983 1111 12345678888
Q ss_pred HHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHhCCCh
Q 048364 156 SGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE---RNVISWTALICGSAHRGYS 232 (400)
Q Consensus 156 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 232 (400)
..+...|+++. |...++.+.+.... ..++..+..+|...|++++|...++++.+ .+...+..+...+...|++
T Consensus 245 ~~~~~~~~~~~--A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 245 IFKFLKNDPLG--AHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHSSCHHH--HHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHCCCHHH--HHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCH
Confidence 89999999999 99999999887655 88889999999999999999999998876 3567888899999999999
Q ss_pred hhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHh
Q 048364 233 EDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRT 312 (400)
Q Consensus 233 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 312 (400)
++|...+++...... .+...+..+...+...|++++|...++.+.+. .+.+...+..+...|...|++++|...+++
T Consensus 321 ~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 321 DQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp THHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999988643 35678888999999999999999999999853 244667888999999999999999999998
Q ss_pred c-cCCcc-------HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHH
Q 048364 313 M-RLEPN-------VIIWGSFLAACKE---HKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLM 381 (400)
Q Consensus 313 ~-~~~p~-------~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 381 (400)
+ ...|+ ...+..+...+.. .|++++|...++++.+.. | .+..++..++.+|...|++++|...+++.
T Consensus 398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-P-RSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-c-ccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 8 22232 3388889999999 999999999999999998 8 78899999999999999999999999998
Q ss_pred hcc
Q 048364 382 LNQ 384 (400)
Q Consensus 382 ~~~ 384 (400)
.+.
T Consensus 476 ~~~ 478 (514)
T 2gw1_A 476 ADL 478 (514)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-23 Score=188.96 Aligned_cols=318 Identities=14% Similarity=0.097 Sum_probs=229.7
Q ss_pred chhhhhHHHHHH-HhCCHHHHHHHHhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHhhCC---CCChhhHHHHHHHH
Q 048364 50 HVYVATSLLHEY-VVTSFGFARKLFDELPE---RNAVTWNTMIKGYSKSGNVCEARDFFERMP---LRNVASWSAMIAAY 122 (400)
Q Consensus 50 ~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~ 122 (400)
+...+..+...+ ..|++++|..+|+++.+ .+..+|..+..++...|++++|++.|+++. +.+..+|..+..+|
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 445566666666 67777777777766542 345666667777777777777777777654 23456677777777
Q ss_pred HhcCCcchHHHHHHHHHhcCCCCCCH----HHHHHH------------HHHhhcccchhhhhhhhhhhHHHhccccchHH
Q 048364 123 LNAGAYDPGLKLFREMISNEGLTPDQ----MTIGAV------------LSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQ 186 (400)
Q Consensus 123 ~~~g~~~~a~~~~~~m~~~~~~~p~~----~~~~~l------------l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 186 (400)
.+.|++++|.+.|+++. ...|+. ..+..+ ...+...|+++. |...++.+.+.. +.+..
T Consensus 105 ~~~g~~~~A~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--A~~~~~~~~~~~-~~~~~ 178 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVL---KSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTA--AIAFLDKILEVC-VWDAE 178 (450)
T ss_dssp HHTTCHHHHHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH--HHHHHHHHHHHC-TTCHH
T ss_pred HHcCCHHHHHHHHHHHH---hcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHhC-CCChH
Confidence 77777777777777776 234433 333333 334677777777 777777776654 33566
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC-HHHHHHH-----
Q 048364 187 IATILVDMYAKCGFLKYALMVFELMEE---RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPN-EMTFTGV----- 257 (400)
Q Consensus 187 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l----- 257 (400)
++..++.+|.+.|++++|...|+++.+ .+..+|..++..|...|++++|+..|+++... .|+ ...+..+
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHH
Confidence 777888888888888888888887764 35677888888888888888888888888765 333 3334333
Q ss_pred -------HHHHHhcCChhhHHHHHHHhhhhcCCCCC-----hhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHH
Q 048364 258 -------LTACVHTGLVDEGRKYFKMIDEEYDLEPR-----IQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWG 323 (400)
Q Consensus 258 -------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~ 323 (400)
..++.+.|++++|...|+.+.+. .|+ ...+..++.++.+.|++++|...++++ ...| +...|.
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 333 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALK 333 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 77888999999999999999853 343 347888889999999999999999987 4455 678899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHH------------hhccc-----chHHHHHHHHH
Q 048364 324 SFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDL------------YTMNE-----KWEGAERVRKL 380 (400)
Q Consensus 324 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~g-----~~~~a~~~~~~ 380 (400)
.+..+|...|++++|...++++++.. | .++.++..+..+ |...| +.+++.+.+++
T Consensus 334 ~l~~~~~~~~~~~~A~~~~~~al~~~-p-~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 334 DRAEAYLIEEMYDEAIQDYETAQEHN-E-NDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTS-S-SCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-c-chHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 99999999999999999999999988 8 778888887733 44445 45566666665
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4.8e-23 Score=186.90 Aligned_cols=350 Identities=13% Similarity=0.011 Sum_probs=278.1
Q ss_pred CCCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCC---CChhhHHHHH
Q 048364 13 PSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPE---RNAVTWNTMI 88 (400)
Q Consensus 13 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~---~~~~~~~~l~ 88 (400)
+.+...+..+...+.+.|++++|.++|+.+.+..+ .+...+..+...+ ..|++++|...|+++.+ .+..++..+.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 101 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRG 101 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 44677789999999999999999999999998643 3677888888888 99999999999999874 3577899999
Q ss_pred HHHHcCCChHHHHHHHhhCCC--C-Ch---hhHHHH------------HHHHHhcCCcchHHHHHHHHHhcCCCCCCHHH
Q 048364 89 KGYSKSGNVCEARDFFERMPL--R-NV---ASWSAM------------IAAYLNAGAYDPGLKLFREMISNEGLTPDQMT 150 (400)
Q Consensus 89 ~~~~~~~~~~~a~~~~~~~~~--~-~~---~~~~~l------------~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 150 (400)
.++.+.|++++|.+.|+++.. | +. ..+..+ ...+.+.|++++|+..|+++.+. .+.+...
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~ 179 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV--CVWDAEL 179 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHH
Confidence 999999999999999999863 3 33 555555 44589999999999999999832 2346778
Q ss_pred HHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC--CC-cccHHHH-----
Q 048364 151 IGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE--RN-VISWTAL----- 222 (400)
Q Consensus 151 ~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l----- 222 (400)
+..+..++.+.|+++. |...+..+.+.. +.+..++..++.+|...|++++|...|+++.+ |+ ...+..+
T Consensus 180 ~~~l~~~~~~~g~~~~--A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 180 RELRAECFIKEGEPRK--AISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHHHTTCGGG--GHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHH--HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 9999999999999999 999999988764 34678899999999999999999999999875 33 3344444
Q ss_pred -------HHHHHhCCChhhHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhH
Q 048364 223 -------ICGSAHRGYSEDALSLFEMMQATGVKPN-----EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHY 290 (400)
Q Consensus 223 -------~~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 290 (400)
...+...|++++|...|+++.+. .|+ ...+..+..++.+.|++++|...++.+.+. .+.+...|
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~ 332 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNAL 332 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHH
Confidence 78899999999999999999885 344 347888899999999999999999999853 24467899
Q ss_pred HHHHHHHHhcCChHHHHHHHHhc-cCCcc-HHHHHHHHHH------------HHhcC-----CHHHHHHHHHH-HHHcCC
Q 048364 291 GCMVDLFGKAGFLEEAYEVIRTM-RLEPN-VIIWGSFLAA------------CKEHK-----QFDMAERVIKQ-ALRMVK 350 (400)
Q Consensus 291 ~~l~~~~~~~g~~~~a~~~~~~~-~~~p~-~~~~~~l~~~------------~~~~~-----~~~~a~~~~~~-~~~~~~ 350 (400)
..+..+|...|++++|...++++ ...|+ ...+..+..+ |...| +.+++.+.+++ ..+..
T Consensus 333 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~- 411 (450)
T 2y4t_A 333 KDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWH- 411 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSC-
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhC-
Confidence 99999999999999999999998 66674 4455555533 33334 56777888886 45444
Q ss_pred CCCC---------chHHHHHHHHhhcccchHH
Q 048364 351 PEND---------GGVFTLICDLYTMNEKWEG 373 (400)
Q Consensus 351 ~~~~---------~~~~~~l~~~~~~~g~~~~ 373 (400)
|... ...+..+..+|...|+.+.
T Consensus 412 pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 412 PDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp GGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 4211 1255556666666555544
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-23 Score=191.56 Aligned_cols=348 Identities=11% Similarity=-0.030 Sum_probs=285.3
Q ss_pred HhhHHHHhCCCCCCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCCCC
Q 048364 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPERN 80 (400)
Q Consensus 2 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~~ 80 (400)
+.|+.+...+ |+..+|..+..++.+.|++++|.+.++.+++..+. +...+..+..++ ..|++++|...|+++...+
T Consensus 27 ~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 103 (514)
T 2gw1_A 27 KYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD-YSKVLLRRASANEGLGKFADAMFDLSVLSLNG 103 (514)
T ss_dssp HHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS
T ss_pred HHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4566676654 79999999999999999999999999999997643 566888888889 9999999999998764211
Q ss_pred --------------------------------------------------------------------------------
Q 048364 81 -------------------------------------------------------------------------------- 80 (400)
Q Consensus 81 -------------------------------------------------------------------------------- 80 (400)
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (514)
T 2gw1_A 104 DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDES 183 (514)
T ss_dssp SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSS
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCC
Confidence
Q ss_pred --hhhHHHHHHHHH---cCCChHHHHHHHhhCCC----------------C-ChhhHHHHHHHHHhcCCcchHHHHHHHH
Q 048364 81 --AVTWNTMIKGYS---KSGNVCEARDFFERMPL----------------R-NVASWSAMIAAYLNAGAYDPGLKLFREM 138 (400)
Q Consensus 81 --~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~----------------~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m 138 (400)
...+......+. +.|++++|+..|+++.. | +..++..+...+...|++++|...|+++
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 263 (514)
T 2gw1_A 184 NEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKA 263 (514)
T ss_dssp CHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 222223333333 38999999999988654 2 3467888999999999999999999999
Q ss_pred HhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC---CC
Q 048364 139 ISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE---RN 215 (400)
Q Consensus 139 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~ 215 (400)
.+. .|+...+..+..++...|+++. |...++.+.+... .+..++..+..+|...|++++|...|++..+ .+
T Consensus 264 l~~---~~~~~~~~~l~~~~~~~~~~~~--A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 337 (514)
T 2gw1_A 264 IEL---FPRVNSYIYMALIMADRNDSTE--YYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPEN 337 (514)
T ss_dssp HHH---CCCHHHHHHHHHHHHTSSCCTT--GGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSC
T ss_pred Hhh---CccHHHHHHHHHHHHHCCCHHH--HHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhh
Confidence 832 3557788899999999999999 9999999887653 3567888999999999999999999998864 35
Q ss_pred cccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCC----hhhHH
Q 048364 216 VISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR----IQHYG 291 (400)
Q Consensus 216 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ 291 (400)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+...-.++ ...+.
T Consensus 338 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 416 (514)
T 2gw1_A 338 IFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLV 416 (514)
T ss_dssp SHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHH
Confidence 6788889999999999999999999998763 335678888999999999999999999998854322222 33888
Q ss_pred HHHHHHHh---cCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHH
Q 048364 292 CMVDLFGK---AGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361 (400)
Q Consensus 292 ~l~~~~~~---~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 361 (400)
.+..++.. .|++++|.+.++++ ...| +..++..+...|...|++++|...++++.+.. | .+...+..+
T Consensus 417 ~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~-~~~~~~~~~ 489 (514)
T 2gw1_A 417 GKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA-R-TMEEKLQAI 489 (514)
T ss_dssp HHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-S-SHHHHHHHH
T ss_pred HHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc-c-ccHHHHHHH
Confidence 99999999 99999999999998 4445 56788899999999999999999999999999 7 566665544
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-22 Score=188.56 Aligned_cols=357 Identities=9% Similarity=-0.020 Sum_probs=281.7
Q ss_pred chhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCC---CChhhHHHHHHHH
Q 048364 16 SFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPE---RNAVTWNTMIKGY 91 (400)
Q Consensus 16 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~ 91 (400)
...+..+...+.+.|++++|.+.|+.+++..+. +...+..+..++ ..|++++|+..|+++.+ .+..++..+..++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN-EPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 456777888888899999999999999887543 667788888888 99999999999988763 3567788888899
Q ss_pred HcCCChHHHHHHHhhCC-CCChh---------------------------------------------------------
Q 048364 92 SKSGNVCEARDFFERMP-LRNVA--------------------------------------------------------- 113 (400)
Q Consensus 92 ~~~~~~~~a~~~~~~~~-~~~~~--------------------------------------------------------- 113 (400)
...|++++|++.|+.+. .|+..
T Consensus 104 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSV 183 (537)
T ss_dssp HHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTS
T ss_pred HHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHH
Confidence 99999999998886442 11100
Q ss_pred ------------hHHHHHHHHH--------hcCCcchHHHHHHHHHhcCCCCCC--------HHHHHHHHHHhhcccchh
Q 048364 114 ------------SWSAMIAAYL--------NAGAYDPGLKLFREMISNEGLTPD--------QMTIGAVLSGCSHLGSVG 165 (400)
Q Consensus 114 ------------~~~~l~~~~~--------~~g~~~~a~~~~~~m~~~~~~~p~--------~~~~~~ll~~~~~~~~~~ 165 (400)
....+...+. ..|++++|..+|+++. ...|+ ..++..+...+...|+++
T Consensus 184 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l---~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~ 260 (537)
T 3fp2_A 184 NTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLL---SANTVDDPLRENAALALCYTGIFHFLKNNLL 260 (537)
T ss_dssp CCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHH---C--CCCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH---HHCCCcchhhHHHHHHHHHHHHHHHhcccHH
Confidence 1111111111 1247899999999998 33454 234666777888899999
Q ss_pred hhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHhCCChhhHHHHHHHH
Q 048364 166 LLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE---RNVISWTALICGSAHRGYSEDALSLFEMM 242 (400)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 242 (400)
. |...+..+.+... +...+..+...|...|++++|...|+++.+ .+..++..+...+...|++++|...++++
T Consensus 261 ~--A~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 336 (537)
T 3fp2_A 261 D--AQVLLQESINLHP--TPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKA 336 (537)
T ss_dssp H--HHHHHHHHHHHCC--CHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred H--HHHHHHHHHhcCC--CchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9 9999999888754 477888899999999999999999998875 35678889999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc----
Q 048364 243 QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP---- 317 (400)
Q Consensus 243 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p---- 317 (400)
.+.. +.+...+..+..++...|++++|...++.+.+. .+.+...+..+...+...|++++|.+.|+++ ...|
T Consensus 337 ~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 413 (537)
T 3fp2_A 337 QSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK 413 (537)
T ss_dssp HHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh
Confidence 8864 225678888999999999999999999999864 3445678899999999999999999999987 2112
Q ss_pred ---cHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhcc
Q 048364 318 ---NVIIWGSFLAACKEH----------KQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 318 ---~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
....+......+... |++++|...++++.+.. | .+..++..++.+|...|++++|.+.+++..+.
T Consensus 414 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 414 IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-P-RSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 222344556677777 99999999999999998 8 88899999999999999999999999998764
Q ss_pred c
Q 048364 385 N 385 (400)
Q Consensus 385 ~ 385 (400)
.
T Consensus 492 ~ 492 (537)
T 3fp2_A 492 A 492 (537)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.3e-20 Score=163.68 Aligned_cols=268 Identities=12% Similarity=0.052 Sum_probs=119.1
Q ss_pred hHHHHHHHHHcCCChHHHHHHHhhCC---CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCC---CH-HHHHHHH
Q 048364 83 TWNTMIKGYSKSGNVCEARDFFERMP---LRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTP---DQ-MTIGAVL 155 (400)
Q Consensus 83 ~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p---~~-~~~~~ll 155 (400)
++..+...+...|++++|+..|+++. +.+...|..+..++...|++++|...|+++. ...| +. ..+..+.
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~~~~~~~l~ 115 (359)
T 3ieg_A 39 AYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVL---KSNPSEQEEKEAESQLV 115 (359)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---TSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHH---hcCCcccChHHHHHHHH
Confidence 34444444444455555555544433 2244555566666666666666666666665 2234 21 1111111
Q ss_pred HHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHhCCCh
Q 048364 156 SGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE---RNVISWTALICGSAHRGYS 232 (400)
Q Consensus 156 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 232 (400)
... ....+..+...+...|++++|...++++.+ .+...+..+...+...|++
T Consensus 116 ~~~-------------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (359)
T 3ieg_A 116 KAD-------------------------EMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEP 170 (359)
T ss_dssp HHH-------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHH-------------------------HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCH
Confidence 000 000111223344444555555555544432 1233444444445555555
Q ss_pred hhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHH------------HHHHHHHhc
Q 048364 233 EDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYG------------CMVDLFGKA 300 (400)
Q Consensus 233 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~ 300 (400)
++|...++++.... +.+..++..+...+...|++++|...++.+.+.. +.+...+. .+...+.+.
T Consensus 171 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 247 (359)
T 3ieg_A 171 RKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRD 247 (359)
T ss_dssp HHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 55555555544432 2233444444445555555555555555444321 11111111 113344555
Q ss_pred CChHHHHHHHHhc-cCCccH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHH
Q 048364 301 GFLEEAYEVIRTM-RLEPNV-----IIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGA 374 (400)
Q Consensus 301 g~~~~a~~~~~~~-~~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 374 (400)
|++++|...+++. ...|+. ..+..+..++...|++++|...++++.+.. | .++.++..++.+|...|++++|
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~g~~~~A 325 (359)
T 3ieg_A 248 GRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-P-DNVNALKDRAEAYLIEEMYDEA 325 (359)
T ss_dssp TCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-c-ccHHHHHHHHHHHHHcCCHHHH
Confidence 5555555555544 222221 122334444555555555555555555544 4 4455555555555555555555
Q ss_pred HHHHHHHhc
Q 048364 375 ERVRKLMLN 383 (400)
Q Consensus 375 ~~~~~~m~~ 383 (400)
.+.+++..+
T Consensus 326 ~~~~~~a~~ 334 (359)
T 3ieg_A 326 IQDYEAAQE 334 (359)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 555555443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-20 Score=164.53 Aligned_cols=259 Identities=12% Similarity=0.061 Sum_probs=182.8
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHhhCC---CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHh
Q 048364 82 VTWNTMIKGYSKSGNVCEARDFFERMP---LRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGC 158 (400)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~ 158 (400)
..+..+...+...|++++|++.|+++. +.+..++..+..++...|++++|...|+++.
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~------------------- 64 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVI------------------- 64 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHH-------------------
Confidence 344455555555666666666655543 2244555555566666666666666666555
Q ss_pred hcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCc------ccH------------H
Q 048364 159 SHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNV------ISW------------T 220 (400)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~------------~ 220 (400)
+.. +.+...+..+..+|...|++++|...|++..+.++ ..+ .
T Consensus 65 -------------------~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 124 (359)
T 3ieg_A 65 -------------------ALK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLR 124 (359)
T ss_dssp -------------------HHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------HhC-CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHH
Confidence 322 11233444555555555555555555555544221 122 2
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhc
Q 048364 221 ALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300 (400)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 300 (400)
.+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...++.+.+ ..+.+...+..+...|...
T Consensus 125 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~ 201 (359)
T 3ieg_A 125 SQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASK--LKSDNTEAFYKISTLYYQL 201 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHc
Confidence 23678899999999999999998863 34678889999999999999999999999985 3345778899999999999
Q ss_pred CChHHHHHHHHhc-cCCcc-HHHHH------------HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCc----hHHHHHH
Q 048364 301 GFLEEAYEVIRTM-RLEPN-VIIWG------------SFLAACKEHKQFDMAERVIKQALRMVKPENDG----GVFTLIC 362 (400)
Q Consensus 301 g~~~~a~~~~~~~-~~~p~-~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~ 362 (400)
|++++|.+.+++. ...|+ ...+. .+...+.+.|++++|...++++.+.. | .++ ..+..++
T Consensus 202 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~-~~~~~~~~~~~~la 279 (359)
T 3ieg_A 202 GDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-P-SVAEYTVRSKERIC 279 (359)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-C-SSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-C-CchHHHHHHHHHHH
Confidence 9999999999998 44443 22222 23667899999999999999999998 7 454 3455688
Q ss_pred HHhhcccchHHHHHHHHHHhcc
Q 048364 363 DLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 363 ~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
.++...|++++|...+++..+.
T Consensus 280 ~~~~~~~~~~~A~~~~~~~~~~ 301 (359)
T 3ieg_A 280 HCFSKDEKPVEAIRICSEVLQM 301 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999999874
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.7e-20 Score=172.68 Aligned_cols=345 Identities=11% Similarity=0.020 Sum_probs=270.3
Q ss_pred HhhHHHHhCCCCCCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCC-CC
Q 048364 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELP-ER 79 (400)
Q Consensus 2 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~-~~ 79 (400)
+.|+...+.. +.+..++..+..++.+.|++++|.+.++++++..+. +...+..+...+ ..|++++|...|+.+. .|
T Consensus 46 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 123 (537)
T 3fp2_A 46 KYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASANESLGNFTDAMFDLSVLSLNG 123 (537)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHC---
T ss_pred HHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC
Confidence 3556665544 457888999999999999999999999999997643 566788888888 9999999999986442 11
Q ss_pred Chh---------------------------------------------------------------------hHHHHHHH
Q 048364 80 NAV---------------------------------------------------------------------TWNTMIKG 90 (400)
Q Consensus 80 ~~~---------------------------------------------------------------------~~~~l~~~ 90 (400)
+.. ....+...
T Consensus 124 ~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 203 (537)
T 3fp2_A 124 DFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRL 203 (537)
T ss_dssp --------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHH
Confidence 100 11111111
Q ss_pred HHc--------CCChHHHHHHHhhCCC--CC--------hhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHH
Q 048364 91 YSK--------SGNVCEARDFFERMPL--RN--------VASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIG 152 (400)
Q Consensus 91 ~~~--------~~~~~~a~~~~~~~~~--~~--------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 152 (400)
+.. .|++++|+.+|+++.. |+ ..++..+...+...|++++|.+.|+++. ...|+...+.
T Consensus 204 ~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~~ 280 (537)
T 3fp2_A 204 YSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESI---NLHPTPNSYI 280 (537)
T ss_dssp HTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCCCHHHHH
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---hcCCCchHHH
Confidence 111 2478899999988763 32 2357777788999999999999999998 3467778899
Q ss_pred HHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHhC
Q 048364 153 AVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE---RNVISWTALICGSAHR 229 (400)
Q Consensus 153 ~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~ 229 (400)
.+...+...|+++. |...+..+.+... .+..++..+..+|...|++++|...|++..+ .+...+..+...+...
T Consensus 281 ~l~~~~~~~~~~~~--A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 357 (537)
T 3fp2_A 281 FLALTLADKENSQE--FFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQ 357 (537)
T ss_dssp HHHHHTCCSSCCHH--HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHH--HHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 99999999999999 9999999887753 3577899999999999999999999998875 3567888999999999
Q ss_pred CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCC----hhhHHHHHHHHHhc-----
Q 048364 230 GYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR----IQHYGCMVDLFGKA----- 300 (400)
Q Consensus 230 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~----- 300 (400)
|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+.....++ ...+..+..++...
T Consensus 358 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 436 (537)
T 3fp2_A 358 GKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDP 436 (537)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999998863 335678888999999999999999999998753211111 12244556777787
Q ss_pred -----CChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchH
Q 048364 301 -----GFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357 (400)
Q Consensus 301 -----g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 357 (400)
|++++|...|++. ...| +...+..+..+|...|++++|...++++.+.. | .+...
T Consensus 437 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~-~~~~~ 498 (537)
T 3fp2_A 437 TQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA-R-TMDEK 498 (537)
T ss_dssp --CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CHHH
T ss_pred hhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-C-CcHHH
Confidence 9999999999998 4445 56789999999999999999999999999998 7 44443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-19 Score=156.46 Aligned_cols=184 Identities=13% Similarity=0.032 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048364 185 EQIATILVDMYAKCGFLKYALMVFELMEE--R-NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTAC 261 (400)
Q Consensus 185 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 261 (400)
...+..+..+|...|++++|...|++..+ | +...+..+...+...|++++|...+++..+.. +.+...+..+...+
T Consensus 125 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~ 203 (330)
T 3hym_B 125 GPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVA 203 (330)
T ss_dssp THHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 34455666677777777777777776654 2 34556667777778888888888888777653 33567777788888
Q ss_pred HhcCChhhHHHHHHHhhhhcC-------CCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhc
Q 048364 262 VHTGLVDEGRKYFKMIDEEYD-------LEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEH 332 (400)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 332 (400)
...|++++|...++.+.+... .+....++..+..+|...|++++|...+++. ...| +...+..+..++...
T Consensus 204 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 283 (330)
T 3hym_B 204 FQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLM 283 (330)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHh
Confidence 888888888888877764321 1334567888888888888888888888887 3334 556788888888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHh-hcccch
Q 048364 333 KQFDMAERVIKQALRMVKPENDGGVFTLICDLY-TMNEKW 371 (400)
Q Consensus 333 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~ 371 (400)
|++++|...++++.+.. | .++.++..+..++ ...|+.
T Consensus 284 g~~~~A~~~~~~al~~~-p-~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 284 GNFENAVDYFHTALGLR-R-DDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp TCHHHHHHHHHTTTTTC-S-CCHHHHHHHHHHHHTTTTC-
T ss_pred ccHHHHHHHHHHHHccC-C-CchHHHHHHHHHHHHHhCch
Confidence 89999998888888887 7 7788888888877 455554
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=9.8e-19 Score=151.54 Aligned_cols=264 Identities=11% Similarity=-0.004 Sum_probs=205.4
Q ss_pred ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHH
Q 048364 111 NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATI 190 (400)
Q Consensus 111 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 190 (400)
+...+..+...+...|++++|+++|+++.+.. +.+...+..++.++...|+++. +...+..+.+.. +.+...+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~--A~~~~~~~~~~~-~~~~~~~~~ 95 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANE--LFYLSHKLVDLY-PSNPVSWFA 95 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHH--HHHHHHHHHHHC-TTSTHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHH--HHHHHHHHHHhC-cCCHHHHHH
Confidence 44445555555555666666666666655221 1222344445555556666666 555555555543 224567778
Q ss_pred HHHHHHhcC-CHHHHHHHHHhccC---CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048364 191 LVDMYAKCG-FLKYALMVFELMEE---RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGL 266 (400)
Q Consensus 191 l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 266 (400)
+...+...| ++++|...|++..+ .+...|..+...+...|++++|...++++.+... .+...+..+...+...|+
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhh
Confidence 888899999 99999999998875 3466889999999999999999999999988642 245667779999999999
Q ss_pred hhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cC----------CccHHHHHHHHHHHHhcCCH
Q 048364 267 VDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RL----------EPNVIIWGSFLAACKEHKQF 335 (400)
Q Consensus 267 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~----------~p~~~~~~~l~~~~~~~~~~ 335 (400)
+++|...++.+.+ ..+.+...+..+...+...|++++|...+++. .. ..+..++..+..++...|++
T Consensus 175 ~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 175 SKLAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp HHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 9999999999985 33456788999999999999999999999987 21 33456889999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhcc
Q 048364 336 DMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 336 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
++|...++++.+.. | .+..++..++.+|...|++++|.+.+++..+.
T Consensus 253 ~~A~~~~~~a~~~~-~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 253 AEALDYHRQALVLI-P-QNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHHHHHS-T-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHhhC-c-cchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 99999999999998 8 78999999999999999999999999988764
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.85 E-value=2.2e-19 Score=158.23 Aligned_cols=280 Identities=11% Similarity=-0.000 Sum_probs=195.4
Q ss_pred CCChHHHHH-HHhhCCC--C-----ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchh
Q 048364 94 SGNVCEARD-FFERMPL--R-----NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVG 165 (400)
Q Consensus 94 ~~~~~~a~~-~~~~~~~--~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~ 165 (400)
.|++++|++ .|++... | +...+..+...+.+.|++++|+..|+++.+. .+.+..++..+..++...|+++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHH
Confidence 355555555 5554321 1 2334555556666666666666666666521 1223445555556666666666
Q ss_pred hhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC--CC-cccHHH---------------HHHHHH
Q 048364 166 LLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE--RN-VISWTA---------------LICGSA 227 (400)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~---------------l~~~~~ 227 (400)
. |...++.+.+.. +.+..++..+..+|...|++++|.+.|+++.+ |+ ...+.. .+..+.
T Consensus 116 ~--A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 116 L--AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp H--HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred H--HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 6 666666555543 22455667777777777788888777777654 21 111110 233334
Q ss_pred hCCChhhHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHH
Q 048364 228 HRGYSEDALSLFEMMQATGVKP-NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA 306 (400)
Q Consensus 228 ~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 306 (400)
..|++++|...++++.+..... +..++..+...+...|++++|...++.+.+. .+.+...+..+..+|...|++++|
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHH
Confidence 8899999999999998863221 4788999999999999999999999999853 244578899999999999999999
Q ss_pred HHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC-----------chHHHHHHHHhhcccchHH
Q 048364 307 YEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEND-----------GGVFTLICDLYTMNEKWEG 373 (400)
Q Consensus 307 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~ 373 (400)
...|+++ ...| +...+..+..+|.+.|++++|...++++.+.. | .+ ..++..++.+|...|++++
T Consensus 271 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 271 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ-R-KSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-H-TC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C-CCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence 9999998 4445 57789999999999999999999999999987 6 44 7899999999999999999
Q ss_pred HHHHHHHHh
Q 048364 374 AERVRKLML 382 (400)
Q Consensus 374 a~~~~~~m~ 382 (400)
|..++++..
T Consensus 349 A~~~~~~~l 357 (368)
T 1fch_A 349 YGAADARDL 357 (368)
T ss_dssp HHHHHTTCH
T ss_pred HHHhHHHHH
Confidence 998877443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.7e-17 Score=150.62 Aligned_cols=349 Identities=12% Similarity=0.025 Sum_probs=289.0
Q ss_pred CchhHHHHHHHhcc----cchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-H----hCCHHHHHHHHhhCCCC-ChhhH
Q 048364 15 DSFSILHILKSCTH----FNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-V----VTSFGFARKLFDELPER-NAVTW 84 (400)
Q Consensus 15 ~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~----~g~~~~a~~~~~~~~~~-~~~~~ 84 (400)
+..++..+-..+.. .+++++|.+.|++..+.| +...+..+...| . .+++++|...|++..+. +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 66777777777776 789999999999998865 455666777777 7 88999999999988754 66778
Q ss_pred HHHHHHHHc----CCChHHHHHHHhhCCC-CChhhHHHHHHHHHh----cCCcchHHHHHHHHHhcCCCCCCHHHHHHHH
Q 048364 85 NTMIKGYSK----SGNVCEARDFFERMPL-RNVASWSAMIAAYLN----AGAYDPGLKLFREMISNEGLTPDQMTIGAVL 155 (400)
Q Consensus 85 ~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll 155 (400)
..+...|.. .+++++|++.|++... .+..++..|...|.. .+++++|++.|++.. ..+ +...+..+.
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~-~~~---~~~a~~~Lg 190 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAA-EQG---NVWSCNQLG 190 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTT---CHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-HCC---CHHHHHHHH
Confidence 888888888 8899999999998764 367788889988987 789999999999998 433 567777777
Q ss_pred HHhhc----ccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHh----cCCHHHHHHHHHhccC-CCcccHHHHHHHH
Q 048364 156 SGCSH----LGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAK----CGFLKYALMVFELMEE-RNVISWTALICGS 226 (400)
Q Consensus 156 ~~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~ 226 (400)
..+.. .++.+. |...+....+.+ +...+..+...|.. .+++++|..+|++..+ .+...+..+...|
T Consensus 191 ~~y~~g~g~~~~~~~--A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y 265 (490)
T 2xm6_A 191 YMYSRGLGVERNDAI--SAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYIL 265 (490)
T ss_dssp HHHHHTSSSCCCHHH--HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHhcCCCCCcCHHH--HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 77777 788888 999999888876 45677788888886 8899999999998876 4566777788888
Q ss_pred Hh----CCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CChhhHHHHHHHhhhhcCCCCChhhHHHHHHHH
Q 048364 227 AH----RGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHT-----GLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297 (400)
Q Consensus 227 ~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 297 (400)
.. .+++++|+..|++..+.| +...+..+...+... +++++|...|++..+. .+...+..+...|
T Consensus 266 ~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y 338 (490)
T 2xm6_A 266 EQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGAIY 338 (490)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHH
T ss_pred HCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHHHH
Confidence 87 899999999999998765 456677777888777 8999999999999853 3556778888888
Q ss_pred HhcC---ChHHHHHHHHhccCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhc---
Q 048364 298 GKAG---FLEEAYEVIRTMRLEPNVIIWGSFLAACKE----HKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTM--- 367 (400)
Q Consensus 298 ~~~g---~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 367 (400)
...| ++++|.+.|++.--..+...+..+...|.. .+++++|...+++..+.+ ++..+..|..+|..
T Consensus 339 ~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~----~~~a~~~Lg~~y~~g~g 414 (490)
T 2xm6_A 339 FRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG----LSAAQVQLGEIYYYGLG 414 (490)
T ss_dssp HHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSS
T ss_pred HhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC----CHHHHHHHHHHHHcCCC
Confidence 8766 789999999988222567788888888988 899999999999999876 46788899999988
Q ss_pred -ccchHHHHHHHHHHhcccc
Q 048364 368 -NEKWEGAERVRKLMLNQNV 386 (400)
Q Consensus 368 -~g~~~~a~~~~~~m~~~~~ 386 (400)
.+++++|...|++..+.+.
T Consensus 415 ~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 415 VERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp SCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHCCC
Confidence 8999999999999998774
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.5e-18 Score=144.27 Aligned_cols=268 Identities=7% Similarity=-0.012 Sum_probs=182.0
Q ss_pred HhCCHHHHHHHHhhCCCCCh----hhHHHHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcchHHHHHHH
Q 048364 62 VVTSFGFARKLFDELPERNA----VTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFRE 137 (400)
Q Consensus 62 ~~g~~~~a~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 137 (400)
..|++..|+..++.....++ .....+..+|...|+++.|+..++....|+..++..+...+...|+.++|++.+++
T Consensus 11 ~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ 90 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDR 90 (291)
T ss_dssp HTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 45555555555554443221 12233445555555555555555444333444555555555555555555555555
Q ss_pred HHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCcc
Q 048364 138 MISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVI 217 (400)
Q Consensus 138 m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 217 (400)
+. ..+..|+ +...+..+..+|...|++++|.+.+++ ..+..
T Consensus 91 ll-~~~~~P~------------------------------------~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~ 131 (291)
T 3mkr_A 91 EM-SRSVDVT------------------------------------NTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLE 131 (291)
T ss_dssp HH-HSCCCCS------------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHH
T ss_pred HH-hcccCCC------------------------------------CHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHH
Confidence 54 2233333 344556677788889999999999988 45677
Q ss_pred cHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHH---HHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHH
Q 048364 218 SWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTF---TGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMV 294 (400)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 294 (400)
.+..++..+.+.|++++|...|+++.+.. |+.... ...+..+...|++++|..+|+++.+. .+.+...++.+.
T Consensus 132 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la 207 (291)
T 3mkr_A 132 CMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQA 207 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHH
Confidence 88888999999999999999999998863 553211 12233344558999999999999964 456788899999
Q ss_pred HHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHcCCCCCCchHHHHHHHHhhcccch
Q 048364 295 DLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDM-AERVIKQALRMVKPENDGGVFTLICDLYTMNEKW 371 (400)
Q Consensus 295 ~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 371 (400)
.++.+.|++++|...|++. ...| +..++..++..+...|+.++ +.++++++++.. | .++.+. ....+.+.+
T Consensus 208 ~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~-P-~~~~~~----d~~~~~~~f 281 (291)
T 3mkr_A 208 ACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH-R-SHPFIK----EYRAKENDF 281 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-T-TCHHHH----HHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-C-CChHHH----HHHHHHHHH
Confidence 9999999999999999997 5455 66788899999999999876 578999999999 8 665443 345566666
Q ss_pred HHHHHHH
Q 048364 372 EGAERVR 378 (400)
Q Consensus 372 ~~a~~~~ 378 (400)
+++..-|
T Consensus 282 d~~~~~~ 288 (291)
T 3mkr_A 282 DRLVLQY 288 (291)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 6665443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.83 E-value=6.8e-20 Score=159.09 Aligned_cols=283 Identities=13% Similarity=0.145 Sum_probs=125.7
Q ss_pred HhCCHHHHHHHHhhCCCCChhhHHHHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhc
Q 048364 62 VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISN 141 (400)
Q Consensus 62 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 141 (400)
+.|++++|.+.++++..| .+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|..+++..+ +
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ar-k 89 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMAR-K 89 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-H
Confidence 778888899999888555 48889999999999999999999664 577788888888889999999999777766 3
Q ss_pred CCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHH
Q 048364 142 EGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTA 221 (400)
Q Consensus 142 ~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 221 (400)
..+++.+.+.++.+|.+.|++++ +..+++ .|+..+|..++..|...|++++|...|..+ ..|..
T Consensus 90 --~~~~~~i~~~Li~~Y~Klg~l~e--~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~ 153 (449)
T 1b89_A 90 --KARESYVETELIFALAKTNRLAE--LEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGR 153 (449)
T ss_dssp ---------------------CHHH--HTTTTT-------CC----------------CTTTHHHHHHHT-----TCHHH
T ss_pred --hCccchhHHHHHHHHHHhCCHHH--HHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHH
Confidence 24557778888999999999888 777775 366678889999999999999999999877 48889
Q ss_pred HHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcC
Q 048364 222 LICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301 (400)
Q Consensus 222 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 301 (400)
++.++.+.|++++|.+.+.++ .+..+|..++.+|...|+++.|......+. ..+.....++..|.+.|
T Consensus 154 LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~------~~ad~l~~lv~~Yek~G 221 (449)
T 1b89_A 154 LASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV------VHADELEELINYYQDRG 221 (449)
T ss_dssp HHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT------TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH------hCHhhHHHHHHHHHHCC
Confidence 999999999999999999887 277889999999999999999855444322 23333556888899999
Q ss_pred ChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCC-----CCchHHHHHHHHhhcccchHH
Q 048364 302 FLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALR-MVKPE-----NDGGVFTLICDLYTMNEKWEG 373 (400)
Q Consensus 302 ~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~-----~~~~~~~~l~~~~~~~g~~~~ 373 (400)
++++|..+++.. +..+ -...|+.+.-+|++- ++++..+.++...+ .++|+ .+...|..++..|...++++.
T Consensus 222 ~~eEai~lLe~aL~le~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 222 YFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp CHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 999999888877 5554 345667676666654 34444444443322 22242 356788888888888899988
Q ss_pred HHHHH
Q 048364 374 AERVR 378 (400)
Q Consensus 374 a~~~~ 378 (400)
|...+
T Consensus 301 A~~tm 305 (449)
T 1b89_A 301 AIITM 305 (449)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87643
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=6.4e-19 Score=155.18 Aligned_cols=260 Identities=10% Similarity=-0.022 Sum_probs=187.3
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHH
Q 048364 113 ASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILV 192 (400)
Q Consensus 113 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 192 (400)
..|..+...+.+.|++++|+++|+++.+.. +.+..++..+..++...|+++. |...++.+.+.. +.+..++..+.
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~--A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQA--AIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHH--HHHHHHHHHhcC-CCCHHHHHHHH
Confidence 345555555555566666666665555211 2234455555555555566555 555555555543 22456677778
Q ss_pred HHHHhcCCHHHHHHHHHhccC--C-C----------cccHHHHHHHHHhCCChhhHHHHHHHHHHCCCC-CCHHHHHHHH
Q 048364 193 DMYAKCGFLKYALMVFELMEE--R-N----------VISWTALICGSAHRGYSEDALSLFEMMQATGVK-PNEMTFTGVL 258 (400)
Q Consensus 193 ~~~~~~g~~~~A~~~~~~~~~--~-~----------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~l~ 258 (400)
.+|...|++++|...|+++.+ | + ...+..+...+...|++++|...++++.+.... ++..++..+.
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 888888888888888887764 1 1 223344578899999999999999999886422 2578899999
Q ss_pred HHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHH
Q 048364 259 TACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFD 336 (400)
Q Consensus 259 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~ 336 (400)
..+...|++++|...++++.+. .+.+..++..+..+|...|++++|...|++. ...| +..++..+..+|...|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 9999999999999999999853 3446788999999999999999999999998 5555 4778999999999999999
Q ss_pred HHHHHHHHHHHcCCCCC-----------CchHHHHHHHHhhcccchHHHHHHHHH
Q 048364 337 MAERVIKQALRMVKPEN-----------DGGVFTLICDLYTMNEKWEGAERVRKL 380 (400)
Q Consensus 337 ~a~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 380 (400)
+|...++++++.. |.. +..++..+..++...|+.+.+..+.++
T Consensus 299 ~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQ-RKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHH-HCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC-cccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999877 521 368899999999999999998887765
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-17 Score=152.44 Aligned_cols=364 Identities=12% Similarity=-0.011 Sum_probs=220.3
Q ss_pred CCCchhHHHHHHHhcccchhHHHHHHHHHHHHh-----C--ccc-chhhhhHHHHHH-HhCCHHHHHHHHhhCCC-----
Q 048364 13 PSDSFSILHILKSCTHFNNLTVIHHLHSHILKL-----G--FIS-HVYVATSLLHEY-VVTSFGFARKLFDELPE----- 78 (400)
Q Consensus 13 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~--~~~-~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~----- 78 (400)
......|+.|...+...|++++|++.|++.++. + ..| ...+|+.+..+| ..|++++|...+++..+
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 334566888888888899999999999887653 1 122 235677888888 89999998888876542
Q ss_pred --C----ChhhHHHHHHHHHc--CCChHHHHHHHhhCC--CC-ChhhHHHHHHH---HHhcCCcchHHHHHHHHHhcCCC
Q 048364 79 --R----NAVTWNTMIKGYSK--SGNVCEARDFFERMP--LR-NVASWSAMIAA---YLNAGAYDPGLKLFREMISNEGL 144 (400)
Q Consensus 79 --~----~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~--~~-~~~~~~~l~~~---~~~~g~~~~a~~~~~~m~~~~~~ 144 (400)
+ ...++.....++.+ .+++++|++.|++.. .| ++..+..+..+ +...++.++|++.+++..+ +
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~---l 204 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR---L 204 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH---H
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh---c
Confidence 1 23455555555544 456889999998865 33 45555555444 3456778888888888772 2
Q ss_pred CCC-HHHHHHHHHHhh----cccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC--C-Cc
Q 048364 145 TPD-QMTIGAVLSGCS----HLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE--R-NV 216 (400)
Q Consensus 145 ~p~-~~~~~~ll~~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~ 216 (400)
.|+ ..++..+...+. ..++.+. +...++...... +.+..++..+...|...|++++|...|++..+ | +.
T Consensus 205 ~p~~~~~~~~l~~~~~~~~~~~~~~~~--a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 281 (472)
T 4g1t_A 205 NPDNQYLKVLLALKLHKMREEGEEEGE--GEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNA 281 (472)
T ss_dssp CSSCHHHHHHHHHHHHHCC------CH--HHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred CCcchHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChH
Confidence 343 344444443333 3456666 777777776654 33566777888888999999999998888775 3 33
Q ss_pred ccHHHHHHHHHhC-------------------CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHh
Q 048364 217 ISWTALICGSAHR-------------------GYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMI 277 (400)
Q Consensus 217 ~~~~~l~~~~~~~-------------------~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 277 (400)
.++..+...|... +..+.|...+++..... +.+..++..+...+...|++++|...|++.
T Consensus 282 ~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~ka 360 (472)
T 4g1t_A 282 YLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKE 360 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHH
Confidence 4555555444321 23456777777766643 224456777788888888888888888887
Q ss_pred hhhcCCCCCh--hhHHHHHH-HHHhcCChHHHHHHHHhc-cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 048364 278 DEEYDLEPRI--QHYGCMVD-LFGKAGFLEEAYEVIRTM-RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEN 353 (400)
Q Consensus 278 ~~~~~~~~~~--~~~~~l~~-~~~~~g~~~~a~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 353 (400)
.+. ...+.. ..+..+.. .+...|++++|+..|++. .+.|+...... ....+..++++.++.+ | .
T Consensus 361 L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~---------~~~~l~~~~~~~l~~~-p-~ 428 (472)
T 4g1t_A 361 FSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK---------MKDKLQKIAKMRLSKN-G-A 428 (472)
T ss_dssp HHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH---------HHHHHHHHHHHHHHHC-C--
T ss_pred Hhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH---------HHHHHHHHHHHHHHhC-C-C
Confidence 742 222211 12222322 234678888888888877 56665433222 2344556677777777 8 8
Q ss_pred CchHHHHHHHHhhcccchHHHHHHHHHHhccccccccCcccc
Q 048364 354 DGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395 (400)
Q Consensus 354 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 395 (400)
++.++..++.+|...|++++|++.|++..+.+-......+|+
T Consensus 429 ~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 429 DSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 899999999999999999999999999998776555566665
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.81 E-value=3.8e-16 Score=144.47 Aligned_cols=361 Identities=9% Similarity=0.010 Sum_probs=223.8
Q ss_pred CCCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCC--CChhhHHHHHH
Q 048364 13 PSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPE--RNAVTWNTMIK 89 (400)
Q Consensus 13 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~--~~~~~~~~l~~ 89 (400)
|-|...|..++.. .+.|+++.|..+|+++++.-+ .+...|..++..+ +.|++++|..+|++... |+...|...+.
T Consensus 10 P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P-~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~ 87 (530)
T 2ooe_A 10 PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFP-SSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLS 87 (530)
T ss_dssp TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 4467788888884 678999999999999988532 2566788888888 99999999999999875 66667776665
Q ss_pred HH-HcCCChHHHHH----HHhhCC------CCChhhHHHHHHHHHh---------cCCcchHHHHHHHHHhcCCCCCCHH
Q 048364 90 GY-SKSGNVCEARD----FFERMP------LRNVASWSAMIAAYLN---------AGAYDPGLKLFREMISNEGLTPDQM 149 (400)
Q Consensus 90 ~~-~~~~~~~~a~~----~~~~~~------~~~~~~~~~l~~~~~~---------~g~~~~a~~~~~~m~~~~~~~p~~~ 149 (400)
.. ...|+.++|.+ +|++.. .++...|...+....+ .|++++|..+|++.+ .....+...
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al-~~P~~~~~~ 166 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC-VNPMINIEQ 166 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT-TSCCTTHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH-hchhhhHHH
Confidence 33 34577766654 565532 2345677777765544 678888888888887 321111112
Q ss_pred HHHHHHHHh-------------hcccchhhh-------------------------------------------------
Q 048364 150 TIGAVLSGC-------------SHLGSVGLL------------------------------------------------- 167 (400)
Q Consensus 150 ~~~~ll~~~-------------~~~~~~~~~------------------------------------------------- 167 (400)
.|....... ...+++..+
T Consensus 167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~ 246 (530)
T 2ooe_A 167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR 246 (530)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc
Confidence 222211100 011111110
Q ss_pred ---------hhhhhhhHHHhccccchHHHHHHHHHHHHh-------cCCHH-------HHHHHHHhccC---C-CcccHH
Q 048364 168 ---------MGKSAHGFIVKNEWELNEQIATILVDMYAK-------CGFLK-------YALMVFELMEE---R-NVISWT 220 (400)
Q Consensus 168 ---------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~~~~~---~-~~~~~~ 220 (400)
.+...++.+.... +.++.+|..++..+.+ .|+++ +|..+|++..+ | +...|.
T Consensus 247 ~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~ 325 (530)
T 2ooe_A 247 TEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYF 325 (530)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHH
Confidence 0111222222221 2234455555555554 57765 77777777653 3 345666
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHHCCCCCC-H-HHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHH-H
Q 048364 221 ALICGSAHRGYSEDALSLFEMMQATGVKPN-E-MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDL-F 297 (400)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~ 297 (400)
.++..+.+.|++++|..+|+++.+. .|+ . ..|...+..+.+.|++++|.++|++..+. .+.+...|...+.. +
T Consensus 326 ~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~ 401 (530)
T 2ooe_A 326 AYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEY 401 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHH
Confidence 7777777777777777777777764 343 2 36666777777777777777777777742 11222333222222 3
Q ss_pred HhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCch----HHHHHHHHhhcccch
Q 048364 298 GKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGG----VFTLICDLYTMNEKW 371 (400)
Q Consensus 298 ~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~ 371 (400)
...|++++|..+|++. ...| +...|..++..+.+.|+.++|..+|++++... | .++. .|...+......|+.
T Consensus 402 ~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~-~-~~~~~~~~lw~~~~~~e~~~G~~ 479 (530)
T 2ooe_A 402 YCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG-S-LPPEKSGEIWARFLAFESNIGDL 479 (530)
T ss_dssp HHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC-C-SCGGGCHHHHHHHHHHHHHSSCH
T ss_pred HHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc-C-CCHHHHHHHHHHHHHHHHHcCCH
Confidence 3577777777777766 3334 45667777777777777778888887777765 4 2332 566666666677777
Q ss_pred HHHHHHHHHHhc
Q 048364 372 EGAERVRKLMLN 383 (400)
Q Consensus 372 ~~a~~~~~~m~~ 383 (400)
+.+..+.+++.+
T Consensus 480 ~~~~~~~~r~~~ 491 (530)
T 2ooe_A 480 ASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777776654
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.6e-18 Score=151.39 Aligned_cols=278 Identities=14% Similarity=0.014 Sum_probs=203.0
Q ss_pred CCChHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcchHHH-HHHHHHhcCCCCC--CHHHHHHHHHHhhcccchhhhhhh
Q 048364 94 SGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK-LFREMISNEGLTP--DQMTIGAVLSGCSHLGSVGLLMGK 170 (400)
Q Consensus 94 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~-~~~~m~~~~~~~p--~~~~~~~ll~~~~~~~~~~~~~a~ 170 (400)
.+.++.+...|+.+...+.. ++...|++++|++ .|++......-.| +...+..+...+.+.|+++. |.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--A~ 84 (368)
T 1fch_A 14 VDFWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPN--AV 84 (368)
T ss_dssp ---------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHH--HH
T ss_pred cccHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHH--HH
Confidence 34445555555555433322 3445689999998 8887652222222 34567888999999999999 99
Q ss_pred hhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCC
Q 048364 171 SAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE---RNVISWTALICGSAHRGYSEDALSLFEMMQATGV 247 (400)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 247 (400)
..++.+.+.. +.+..++..+..+|...|++++|...|+++.+ .+..++..+...+...|++++|...++++.....
T Consensus 85 ~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 163 (368)
T 1fch_A 85 LLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTP 163 (368)
T ss_dssp HHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 9999998875 34677889999999999999999999998875 3567889999999999999999999999988643
Q ss_pred CCCHHHHHH---------------HHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHh
Q 048364 248 KPNEMTFTG---------------VLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRT 312 (400)
Q Consensus 248 ~p~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 312 (400)
. +...+.. .+..+...|++++|...++.+.+.....++..++..+...|...|++++|...+++
T Consensus 164 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 242 (368)
T 1fch_A 164 A-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA 242 (368)
T ss_dssp T-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred C-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2 2222211 23334489999999999999986432222578899999999999999999999999
Q ss_pred c-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhcc
Q 048364 313 M-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 313 ~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
+ ...| +...+..+...+...|++++|...++++++.. | .+..++..++.+|...|++++|...++++.+.
T Consensus 243 al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 243 ALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-P-GYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 8 4445 57789999999999999999999999999998 8 88999999999999999999999999998764
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=8.3e-19 Score=154.48 Aligned_cols=258 Identities=10% Similarity=-0.027 Sum_probs=197.8
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHHhhCC---CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 048364 80 NAVTWNTMIKGYSKSGNVCEARDFFERMP---LRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLS 156 (400)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~ 156 (400)
+...+..+...+.+.|++++|++.|+++. +.+..+|..+..+|.+.|++++|++.|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ--PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHH
Confidence 44557778888888888888888888765 3466788888888888888888888888887321 234667888888
Q ss_pred HhhcccchhhhhhhhhhhHHHhccccc---------hHHHHHHHHHHHHhcCCHHHHHHHHHhccC--C---CcccHHHH
Q 048364 157 GCSHLGSVGLLMGKSAHGFIVKNEWEL---------NEQIATILVDMYAKCGFLKYALMVFELMEE--R---NVISWTAL 222 (400)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~l 222 (400)
++...|+++. |...++.+.+..... ...++..+...|...|++++|...|+++.+ | +..++..+
T Consensus 142 ~~~~~g~~~~--A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQD--ACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHH--HHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHccccHHH--HHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 8888888888 888888877654221 122334457889999999999999999875 3 46688899
Q ss_pred HHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCC
Q 048364 223 ICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF 302 (400)
Q Consensus 223 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 302 (400)
...|...|++++|+..|+++.+.. +.+..++..+..++...|++++|...++++.+. .+.+..++..+..+|.+.|+
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCC
Confidence 999999999999999999998863 346788999999999999999999999999853 23457889999999999999
Q ss_pred hHHHHHHHHhc-cCCc-------------cHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048364 303 LEEAYEVIRTM-RLEP-------------NVIIWGSFLAACKEHKQFDMAERVIKQ 344 (400)
Q Consensus 303 ~~~a~~~~~~~-~~~p-------------~~~~~~~l~~~~~~~~~~~~a~~~~~~ 344 (400)
+++|...|++. ...| +...|..+..++...|+.+.+....++
T Consensus 297 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 297 YREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999988 2222 256789999999999999988877665
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.80 E-value=5.7e-18 Score=147.10 Aligned_cols=277 Identities=12% Similarity=0.082 Sum_probs=106.4
Q ss_pred ccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCCCChhhHHHHHHHHHcCCChHHHHHHHhh
Q 048364 28 HFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFER 106 (400)
Q Consensus 28 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 106 (400)
+.|+.++|.++++++ +++.+|..+..++ +.|++++|++.|.+. +|..+|..++..+...|++++|++.++.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 445677777777766 2234677777777 777777777777543 4555777777777777777777776655
Q ss_pred CC--CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccch
Q 048364 107 MP--LRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELN 184 (400)
Q Consensus 107 ~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 184 (400)
.. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.++. |...+..+
T Consensus 87 ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yee--A~~~Y~~a-------- 148 (449)
T 1b89_A 87 ARKKARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDA--AKLLYNNV-------- 148 (449)
T ss_dssp ----------------------CHHHHTTTTT--------CC----------------CTTT--HHHHHHHT--------
T ss_pred HHHhCccchhHHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHH--HHHHHHHh--------
Confidence 54 2345667777777777777777666652 2555677777777777777777 77777644
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048364 185 EQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHT 264 (400)
Q Consensus 185 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 264 (400)
..|..++.++.+.|++++|.+.+.++. ++.+|..++.+|...|+++.|...... +...+.-...++..|.+.
T Consensus 149 -~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~ 220 (449)
T 1b89_A 149 -SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDR 220 (449)
T ss_dssp -TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHT
T ss_pred -hhHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHC
Confidence 356777777777777777777777773 667777777777777777777544332 222333344566777777
Q ss_pred CChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhc--CChHHHHHHHHhc-cCCc------cHHHHHHHHHHHHhcCCH
Q 048364 265 GLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA--GFLEEAYEVIRTM-RLEP------NVIIWGSFLAACKEHKQF 335 (400)
Q Consensus 265 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~-~~~p------~~~~~~~l~~~~~~~~~~ 335 (400)
|++++|..+++..... . +-....|+-+..+|++- ++..+.++.|..- +++| +...|..+...|.+.+++
T Consensus 221 G~~eEai~lLe~aL~l-e-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~ 298 (449)
T 1b89_A 221 GYFEELITMLEAALGL-E-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEY 298 (449)
T ss_dssp TCHHHHHHHHHHHTTS-T-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHhCC-c-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchH
Confidence 7777777777776621 1 33455666666666643 3444555544433 4434 344677777777777777
Q ss_pred HHHHH
Q 048364 336 DMAER 340 (400)
Q Consensus 336 ~~a~~ 340 (400)
+.|..
T Consensus 299 d~A~~ 303 (449)
T 1b89_A 299 DNAII 303 (449)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.80 E-value=6.7e-18 Score=146.07 Aligned_cols=259 Identities=9% Similarity=-0.021 Sum_probs=181.1
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHH
Q 048364 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMY 195 (400)
Q Consensus 116 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 195 (400)
..+...+...|++++|..+|+++.+.. +.+..++..+..++...|+++. |...++.+.+.. +.+..++..+..+|
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~--A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGL--AIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHH--HHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 334444444444444444444443110 1123334444444444444444 444444444332 22345566667777
Q ss_pred HhcCCHHHHHHHHHhccC--C-CcccHHHH--------------HH-HHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHH
Q 048364 196 AKCGFLKYALMVFELMEE--R-NVISWTAL--------------IC-GSAHRGYSEDALSLFEMMQATGVKPNEMTFTGV 257 (400)
Q Consensus 196 ~~~g~~~~A~~~~~~~~~--~-~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 257 (400)
...|++++|.+.++++.+ | +...+..+ .. .+...|++++|...++++.+.. +.+...+..+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 178 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL 178 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 777777777777777654 2 22223222 22 3777889999999999998864 3367889999
Q ss_pred HHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCH
Q 048364 258 LTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQF 335 (400)
Q Consensus 258 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~ 335 (400)
...+...|++++|...++.+.+. .+.+...+..+...+...|++++|.+.++++ ...| +...+..+..++...|++
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccH
Confidence 99999999999999999999853 2446778999999999999999999999998 4444 577899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCC-----------CchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 336 DMAERVIKQALRMVKPEN-----------DGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 336 ~~a~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
++|...++++.+.. |.. +..++..+..++...|++++|..++++..+
T Consensus 257 ~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQ-VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHHHHHHHH-TTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHHHHHHHHHhC-CccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999999988 721 688999999999999999999998876554
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.9e-16 Score=142.94 Aligned_cols=345 Identities=10% Similarity=-0.036 Sum_probs=273.7
Q ss_pred CchhHHHHHHHhcc----cchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-H----hCCHHHHHHHHhhCCCC-ChhhH
Q 048364 15 DSFSILHILKSCTH----FNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-V----VTSFGFARKLFDELPER-NAVTW 84 (400)
Q Consensus 15 ~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~----~g~~~~a~~~~~~~~~~-~~~~~ 84 (400)
+...+..|-..+.. .+++++|.+.|++..+.| +...+..+...| . .+++++|...|++..+. +...+
T Consensus 74 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~ 150 (490)
T 2xm6_A 74 YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQ 150 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 56677788888877 899999999999998865 455566677777 6 78999999999988754 66778
Q ss_pred HHHHHHHHc----CCChHHHHHHHhhCC-CCChhhHHHHHHHHHh----cCCcchHHHHHHHHHhcCCCCCCHHHHHHHH
Q 048364 85 NTMIKGYSK----SGNVCEARDFFERMP-LRNVASWSAMIAAYLN----AGAYDPGLKLFREMISNEGLTPDQMTIGAVL 155 (400)
Q Consensus 85 ~~l~~~~~~----~~~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll 155 (400)
..+...|.. .+++++|++.|++.. ..+..++..+...|.. .+++++|.++|++.. ..+ +...+..+.
T Consensus 151 ~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~-~~~---~~~a~~~lg 226 (490)
T 2xm6_A 151 QSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSA-TSG---DELGQLHLA 226 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTT---CHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH-HCC---CHHHHHHHH
Confidence 888888887 889999999999865 3477888899999988 899999999999988 433 456677777
Q ss_pred HHhhc----ccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHh----cCCHHHHHHHHHhccC-CCcccHHHHHHHH
Q 048364 156 SGCSH----LGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAK----CGFLKYALMVFELMEE-RNVISWTALICGS 226 (400)
Q Consensus 156 ~~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~ 226 (400)
..+.. .++.+. |...++...+.+ +...+..+...|.. .++.++|...|++..+ .+...+..+...|
T Consensus 227 ~~y~~g~g~~~~~~~--A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y 301 (490)
T 2xm6_A 227 DMYYFGIGVTQDYTQ--SRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLY 301 (490)
T ss_dssp HHHHHTSSSCCCHHH--HHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHH--HHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77765 778888 999999888775 45567778888888 8999999999999876 4566778888888
Q ss_pred HhC-----CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHH
Q 048364 227 AHR-----GYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTG---LVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298 (400)
Q Consensus 227 ~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 298 (400)
... +++++|+..|++..+.| +...+..+...+...| +.++|.++|++..+. .++..+..+...|.
T Consensus 302 ~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~ 374 (490)
T 2xm6_A 302 DKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALL 374 (490)
T ss_dssp HHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHH
T ss_pred HcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHH
Confidence 887 89999999999998875 4566777777777756 789999999999853 46778888999999
Q ss_pred h----cCChHHHHHHHHhccCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCC--CCchHHHHHHHHhhcc
Q 048364 299 K----AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKE----HKQFDMAERVIKQALRMVKPE--NDGGVFTLICDLYTMN 368 (400)
Q Consensus 299 ~----~g~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~ 368 (400)
. .+++++|.+.|++.--..+...+..+...|.. .+++++|...|+++.+.+ |. .++.....+...+..
T Consensus 375 ~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~-~~~~~~~~a~~~l~~~~~~- 452 (490)
T 2xm6_A 375 QGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND-MNLFGTENRNITEKKLTAK- 452 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH-CCHHHHHHHHHHHTTSCHH-
T ss_pred cCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-CCCcCCHHHHHHHHhcCHh-
Confidence 8 89999999999998212356778888888888 899999999999999998 52 155555555554443
Q ss_pred cchHH----HHHHHHHH
Q 048364 369 EKWEG----AERVRKLM 381 (400)
Q Consensus 369 g~~~~----a~~~~~~m 381 (400)
+.+. |.+++++.
T Consensus 453 -~~~~a~~~a~~~~~~~ 468 (490)
T 2xm6_A 453 -QLQQAELLSQQYIEKY 468 (490)
T ss_dssp -HHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHH
Confidence 3333 44555544
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.2e-17 Score=139.00 Aligned_cols=243 Identities=12% Similarity=0.071 Sum_probs=183.8
Q ss_pred HHHhcCCcchHHHHHHHHHhcCCCCCCH--HHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhc
Q 048364 121 AYLNAGAYDPGLKLFREMISNEGLTPDQ--MTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKC 198 (400)
Q Consensus 121 ~~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 198 (400)
.....|+++.|++.++... ...|+. .....+.+++...|+++. +...++. .-+|+..++..+...+...
T Consensus 8 ~~~~~g~y~~ai~~~~~~~---~~~p~~~~e~~~~l~r~yi~~g~~~~--al~~~~~----~~~~~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVK---PSSPERDVERDVFLYRAYLAQRKYGV--VLDEIKP----SSAPELQAVRMFAEYLASH 78 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSC---CCSHHHHHHHHHHHHHHHHHTTCHHH--HHHHSCT----TSCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHhcc---cCCchhhHHHHHHHHHHHHHCCCHHH--HHHHhcc----cCChhHHHHHHHHHHHcCC
Confidence 3444566666666655543 233432 233445566666666655 4433322 1345667778888889999
Q ss_pred CCHHHHHHHHHhccC----C-CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 048364 199 GFLKYALMVFELMEE----R-NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKY 273 (400)
Q Consensus 199 g~~~~A~~~~~~~~~----~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 273 (400)
|+.++|.+.++++.. | +...+..+...+...|++++|+..+++ +.+...+..++..+.+.|++++|.+.
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999998752 4 345667777899999999999999987 45778899999999999999999999
Q ss_pred HHHhhhhcCCCCChhhH---HHHHHHHHhcCChHHHHHHHHhc--cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048364 274 FKMIDEEYDLEPRIQHY---GCMVDLFGKAGFLEEAYEVIRTM--RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM 348 (400)
Q Consensus 274 ~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 348 (400)
++.+.+. .|+.... ..++..+...|++++|..+|+++ ..+++...++.+..++.+.|++++|...++++++.
T Consensus 153 l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 153 LKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999854 3543211 22334444569999999999999 33457788999999999999999999999999999
Q ss_pred CCCCCCchHHHHHHHHhhcccchHH-HHHHHHHHhc
Q 048364 349 VKPENDGGVFTLICDLYTMNEKWEG-AERVRKLMLN 383 (400)
Q Consensus 349 ~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~ 383 (400)
. | .++.++..++.++...|+.++ +.++++++.+
T Consensus 230 ~-p-~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 230 D-S-GHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp C-T-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred C-C-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9 8 899999999999999999976 5688888765
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.76 E-value=7.7e-17 Score=139.38 Aligned_cols=255 Identities=9% Similarity=0.040 Sum_probs=135.7
Q ss_pred HhCCHHHHHHHHhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHhhCC---CCChhhHHHHHHHHHhcCCcchHHHHH
Q 048364 62 VVTSFGFARKLFDELPE---RNAVTWNTMIKGYSKSGNVCEARDFFERMP---LRNVASWSAMIAAYLNAGAYDPGLKLF 135 (400)
Q Consensus 62 ~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~ 135 (400)
..|++++|..+|+++.+ .+...+..+...+.+.|++++|.+.|+++. +.+..++..+...+...|++++|.+.+
T Consensus 33 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 112 (327)
T 3cv0_A 33 KLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASL 112 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 45555555555544431 234455555566666666666666666543 235567777777778888888888888
Q ss_pred HHHHhcCCCCCCHH-HHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHH-HH-HHHhcCCHHHHHHHHHhcc
Q 048364 136 REMISNEGLTPDQM-TIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATIL-VD-MYAKCGFLKYALMVFELME 212 (400)
Q Consensus 136 ~~m~~~~~~~p~~~-~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~g~~~~A~~~~~~~~ 212 (400)
+++.+. .|+.. .+..+...+ |+......+ .. .+...|++++|...++++.
T Consensus 113 ~~~~~~---~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 165 (327)
T 3cv0_A 113 RAWLLS---QPQYEQLGSVNLQAD------------------------VDIDDLNVQSEDFFFAAPNEYRECRTLLHAAL 165 (327)
T ss_dssp HHHHHT---STTTTTC--------------------------------------------CCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHh---CCccHHHHHHHhHHH------------------------HHHHHHHHHHHhHHHHHcccHHHHHHHHHHHH
Confidence 777622 23221 111110000 000000011 11 1344455555555555544
Q ss_pred C---CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhh
Q 048364 213 E---RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQH 289 (400)
Q Consensus 213 ~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 289 (400)
+ .+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+. .+.+...
T Consensus 166 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~ 242 (327)
T 3cv0_A 166 EMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI--NPGYVRV 242 (327)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred hhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHH
Confidence 3 233455555566666666666666666655542 224455666666666666666666666666532 1234555
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhc-cCCc-------------cHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048364 290 YGCMVDLFGKAGFLEEAYEVIRTM-RLEP-------------NVIIWGSFLAACKEHKQFDMAERVIKQAL 346 (400)
Q Consensus 290 ~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 346 (400)
+..+..+|...|++++|.+.+++. ...| +...|..+..++...|++++|..++++.+
T Consensus 243 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 243 MYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 666666666666666666666665 2222 24566666666666677766666665443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.7e-19 Score=165.04 Aligned_cols=148 Identities=11% Similarity=0.106 Sum_probs=97.3
Q ss_pred ccHHHHHHHHHhCCChhhHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHH
Q 048364 217 ISWTALICGSAHRGYSEDALSLFEMMQA---TGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCM 293 (400)
Q Consensus 217 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~---~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 293 (400)
.+||++|.+||+.|+.++|.++|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+. |+.||..+|+++
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~-G~~PDvvTYntL 206 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA-GLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCCCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCcHHHHHHH
Confidence 4677777777777777777777766653 367777777777777777777777777777777743 777777777777
Q ss_pred HHHHHhcCCh-HHHHHHHHhc---cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----CCchHHHHHHHHh
Q 048364 294 VDLFGKAGFL-EEAYEVIRTM---RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPE----NDGGVFTLICDLY 365 (400)
Q Consensus 294 ~~~~~~~g~~-~~a~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~l~~~~ 365 (400)
|.++++.|+. ++|.++|++| |+.||..+|++++.++.+. .+++.++++.....|+ +...+...|...|
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~ 282 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVY 282 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHhCcccCCCCCCcccccchHHHHHHH
Confidence 7777777764 5677777777 7777777777777554332 3333333332211111 1234445566666
Q ss_pred hccc
Q 048364 366 TMNE 369 (400)
Q Consensus 366 ~~~g 369 (400)
.+.+
T Consensus 283 s~d~ 286 (1134)
T 3spa_A 283 AKDG 286 (1134)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 6544
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.75 E-value=8e-15 Score=135.58 Aligned_cols=339 Identities=10% Similarity=0.029 Sum_probs=238.0
Q ss_pred HHHHHHhCcccchhhhhHHHHHHHhCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHhhCC--CCChh
Q 048364 39 HSHILKLGFISHVYVATSLLHEYVVTSFGFARKLFDELPE--R-NAVTWNTMIKGYSKSGNVCEARDFFERMP--LRNVA 113 (400)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~ 113 (400)
++..++..+. +...|..++.....|++++|..+|+++.+ | +...|..++..+.+.|++++|.++|++.. .|+..
T Consensus 2 le~al~~~P~-~~~~w~~l~~~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~ 80 (530)
T 2ooe_A 2 AEKKLEENPY-DLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHID 80 (530)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHH
T ss_pred hhhHhhhCCC-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChH
Confidence 4455554322 66788888873388999999999999975 3 56679999999999999999999999976 46777
Q ss_pred hHHHHHHH-HHhcCCcchHHH----HHHHHHhcCCCCCC-HHHHHHHHHHhhc---------ccchhhhhhhhhhhHHHh
Q 048364 114 SWSAMIAA-YLNAGAYDPGLK----LFREMISNEGLTPD-QMTIGAVLSGCSH---------LGSVGLLMGKSAHGFIVK 178 (400)
Q Consensus 114 ~~~~l~~~-~~~~g~~~~a~~----~~~~m~~~~~~~p~-~~~~~~ll~~~~~---------~~~~~~~~a~~~~~~~~~ 178 (400)
.|...+.. ....|+.+.|.+ +|+......|..|+ ...|...+....+ .|+++. +..+++...+
T Consensus 81 lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~--a~~~y~~al~ 158 (530)
T 2ooe_A 81 LWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITA--VRRVYQRGCV 158 (530)
T ss_dssp HHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHH--HHHHHHHHTT
T ss_pred HHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHH--HHHHHHHHHh
Confidence 77777753 345688888776 77777644565554 4566665555433 677777 7878877776
Q ss_pred ccccchHHHHHHHHHHH-------------HhcCCHH-------------------------------------------
Q 048364 179 NEWELNEQIATILVDMY-------------AKCGFLK------------------------------------------- 202 (400)
Q Consensus 179 ~~~~~~~~~~~~l~~~~-------------~~~g~~~------------------------------------------- 202 (400)
........+|....... .+.++++
T Consensus 159 ~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~ 238 (530)
T 2ooe_A 159 NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQ 238 (530)
T ss_dssp SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHH
Confidence 32111122222111100 0011122
Q ss_pred -----------------HHHHHHHhccC--C-CcccHHHHHHHHHh-------CCChh-------hHHHHHHHHHHCCCC
Q 048364 203 -----------------YALMVFELMEE--R-NVISWTALICGSAH-------RGYSE-------DALSLFEMMQATGVK 248 (400)
Q Consensus 203 -----------------~A~~~~~~~~~--~-~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~m~~~~~~ 248 (400)
.+..+|++... | +...|...+..+.+ .|+++ +|..+|++..+.-.+
T Consensus 239 ~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p 318 (530)
T 2ooe_A 239 WEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK 318 (530)
T ss_dssp HHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCS
T ss_pred HHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCc
Confidence 33344444433 2 34456666666654 68877 899999988763123
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCC-h-hhHHHHHHHHHhcCChHHHHHHHHhc-cCCcc-HHHHHH
Q 048364 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR-I-QHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPN-VIIWGS 324 (400)
Q Consensus 249 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~-~~~~~~ 324 (400)
-+...+..++..+.+.|++++|..+|+++.+ ..|+ . ..|..++..+.+.|++++|.++|++. ...|+ ...|..
T Consensus 319 ~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~ 395 (530)
T 2ooe_A 319 KNMLLYFAYADYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVT 395 (530)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHH
T ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC---ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHH
Confidence 3567888888888999999999999999984 2453 2 47888888888999999999999988 44443 223322
Q ss_pred HHHH-HHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhccc
Q 048364 325 FLAA-CKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQN 385 (400)
Q Consensus 325 l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 385 (400)
.+.. +...|++++|..+|+++++.. | .++..+..++..+.+.|+.++|..+|++....+
T Consensus 396 ~a~~~~~~~~~~~~A~~~~e~al~~~-p-~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 396 AALMEYYCSKDKSVAFKIFELGLKKY-G-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHH-T-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHcCChhHHHHHHHHHHHHC-C-CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 2222 336899999999999999998 8 789999999999999999999999999998753
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-18 Score=163.59 Aligned_cols=161 Identities=10% Similarity=0.125 Sum_probs=129.2
Q ss_pred ccchHHHHHHHHHHHHhcCCHHHHHHHHHhcc-------CCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHH
Q 048364 181 WELNEQIATILVDMYAKCGFLKYALMVFELME-------ERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMT 253 (400)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 253 (400)
......+|++||++|++.|++++|.++|++|. .||+.+||+||.+||+.|++++|.++|++|.+.|+.||..|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 34456789999999999999999999997764 48999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCh-hhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc--cCCcc------HHHHHH
Q 048364 254 FTGVLTACVHTGLV-DEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM--RLEPN------VIIWGS 324 (400)
Q Consensus 254 ~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~p~------~~~~~~ 324 (400)
|+++|.++++.|+. ++|.++|++|.++ |+.||..+|++++....+. .+++.++++ ++.|+ ..+...
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~----~vL~~Vrkv~P~f~p~~~~~~~~~t~~L 277 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRA----TVLKAVHKVKPTFSLPPQLPPPVNTSKL 277 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHH----HHHHHHGGGCCCCCCCCCCCCCCCCCTT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHH----HHHHHHHHhCcccCCCCCCcccccchHH
Confidence 99999999999985 7899999999955 9999999999998776665 445555555 33333 344555
Q ss_pred HHHHHHhcC---------CHHHHHHHHHHHH
Q 048364 325 FLAACKEHK---------QFDMAERVIKQAL 346 (400)
Q Consensus 325 l~~~~~~~~---------~~~~a~~~~~~~~ 346 (400)
|...|.+.+ ..++-..++++-+
T Consensus 278 L~dl~s~d~~~s~pk~~~~~~~L~~~~~~Ql 308 (1134)
T 3spa_A 278 LRDVYAKDGRVSYPKLHLPLKTLQCLFEKQL 308 (1134)
T ss_dssp THHHHCCCSCCCCCCCSSCHHHHHHHHHHHH
T ss_pred HHHHHccCCCCcCccccCCHHHHHHHHHHHH
Confidence 666666554 2345555555544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.74 E-value=9.3e-15 Score=141.66 Aligned_cols=325 Identities=15% Similarity=0.083 Sum_probs=204.6
Q ss_pred CchhHHHHHHHhcccchhHHHHHHHHHHHHhCc--ccchhhhhHHHH---------------------------HH-HhC
Q 048364 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGF--ISHVYVATSLLH---------------------------EY-VVT 64 (400)
Q Consensus 15 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~---------------------------~~-~~g 64 (400)
++.-....++++...|.+.+|.++++++.-.+- ..+...-+.++. .+ ..|
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lg 1063 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNE 1063 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCC
Confidence 444557778888899999999999999874321 012223333332 23 455
Q ss_pred CHHHHHHHHhhCCCCChhhHHHHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCC
Q 048364 65 SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGL 144 (400)
Q Consensus 65 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 144 (400)
.+++|..+|++.... ....+.++ -..+++++|.++.++.. +..+|..+..++.+.|++++|++.|.+.
T Consensus 1064 lyEEAf~IYkKa~~~-~~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA------ 1131 (1630)
T 1xi4_A 1064 LFEEAFAIFRKFDVN-TSAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA------ 1131 (1630)
T ss_pred CHHHHHHHHHHcCCH-HHHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc------
Confidence 555555555554311 11112121 14555666666666553 3566667777777777777777777443
Q ss_pred CCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHH
Q 048364 145 TPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALIC 224 (400)
Q Consensus 145 ~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~ 224 (400)
-|...|..++.++.+.|++++ +.+++....+.. +++.+.+.++.+|++.+++++...+. ..++...|..+..
T Consensus 1132 -dD~say~eVa~~~~~lGkyEE--AIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd 1203 (1630)
T 1xi4_A 1132 -DDPSSYMEVVQAANTSGNWEE--LVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGD 1203 (1630)
T ss_pred -CChHHHHHHHHHHHHcCCHHH--HHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHH
Confidence 345566667777777777777 777776666554 22223334777777777776533332 3345555666777
Q ss_pred HHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChH
Q 048364 225 GSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLE 304 (400)
Q Consensus 225 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 304 (400)
.|...|++++|..+|... ..|..+..++.+.|++++|.+.+++.. +..+|..+..+|...|++.
T Consensus 1204 ~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~acve~~Ef~ 1267 (1630)
T 1xi4_A 1204 RCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGKEFR 1267 (1630)
T ss_pred HHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHHhhhhHHH
Confidence 777777777777777763 357777777777777777777776653 3466777777777777777
Q ss_pred HHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcc--cchHHHHHHHH
Q 048364 305 EAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN--EKWEGAERVRK 379 (400)
Q Consensus 305 ~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~ 379 (400)
.|......+ ..+...+..++..|.+.|.+++|+.+++..+... + .+...|..+...|.+. ++.-++.++|.
T Consensus 1268 LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-r-aH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1268 LAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLE-R-AHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-h-hHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 777666543 3344456677788888888888888888888777 6 6777777777666643 44444444444
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.4e-16 Score=125.72 Aligned_cols=197 Identities=17% Similarity=0.040 Sum_probs=157.4
Q ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHH
Q 048364 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEE--R-NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVL 258 (400)
Q Consensus 182 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 258 (400)
+++...+..+...+.+.|++++|...|++..+ | +...+..+...+.+.|++++|+..+++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 45667788889999999999999999999876 3 45678888999999999999999999998863 23567888899
Q ss_pred HHHHhc-----------CChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCccHHHHHHHH
Q 048364 259 TACVHT-----------GLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNVIIWGSFL 326 (400)
Q Consensus 259 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~~~~~~l~ 326 (400)
.++... |++++|...+++..+. .+.+...+..+..+|...|++++|...|++. .+..+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence 999999 9999999999999853 2335778899999999999999999999998 2227788899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 327 AACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 327 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
.+|...|++++|...++++++.. | .++.++..+..++...|++++|+..+++...
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~-P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQA-P-KDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-T-TCHHHHHHHHHHHTC----------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-C-CChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 99999999999999999999999 8 8899999999999999999999999887643
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.72 E-value=2.6e-14 Score=138.61 Aligned_cols=313 Identities=12% Similarity=0.139 Sum_probs=241.9
Q ss_pred HHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHH-H-HhCCHHHHHHHHhhCCCCChhhHHHHHHHHHcCCChH
Q 048364 21 HILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE-Y-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVC 98 (400)
Q Consensus 21 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~-~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 98 (400)
.+...|...|.+++|..+|++.. .+...+.. + ..+++++|.++.++.. +..+|..+..++...|+++
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~---------~~~~A~~VLie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFD---------VNTSAVQVLIEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcC---------CHHHHHHHHHHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHH
Confidence 34556667888888888887751 12222233 3 7888999999998774 4678899999999999999
Q ss_pred HHHHHHhhCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHh
Q 048364 99 EARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178 (400)
Q Consensus 99 ~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~ 178 (400)
+|++.|.+. .|...|..++.++.+.|++++|.++|...+ .. .+++...+.+.-+|++.++++. ...+. +
T Consensus 1123 EAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mAr-k~--~~e~~Idt~LafaYAKl~rlee--le~fI----~ 1191 (1630)
T 1xi4_A 1123 EAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMAR-KK--ARESYVETELIFALAKTNRLAE--LEEFI----N 1191 (1630)
T ss_pred HHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHH-hh--cccccccHHHHHHHHhhcCHHH--HHHHH----h
Confidence 999999775 678889999999999999999999999887 32 3444444458889999988765 44332 1
Q ss_pred ccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHH
Q 048364 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVL 258 (400)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 258 (400)
.++...+..+...|...|++++|..+|... ..|..+..+|++.|++++|.+.+++. .+..+|..+-
T Consensus 1192 ---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~ 1257 (1630)
T 1xi4_A 1192 ---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC 1257 (1630)
T ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHH
Confidence 345566777999999999999999999986 48999999999999999999999876 3668899999
Q ss_pred HHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCccH-HHHHHHHHHHHhc--CC
Q 048364 259 TACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNV-IIWGSFLAACKEH--KQ 334 (400)
Q Consensus 259 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~-~~~~~l~~~~~~~--~~ 334 (400)
.+|...|++..|......+. .++..+..++..|.+.|.+++|..+++.. +..|.. ..|.-+...|++. ++
T Consensus 1258 ~acve~~Ef~LA~~cgl~Ii------v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~pek 1331 (1630)
T 1xi4_A 1258 FACVDGKEFRLAQMCGLHIV------VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQK 1331 (1630)
T ss_pred HHHhhhhHHHHHHHHHHhhh------cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHH
Confidence 99999999999988765433 35667789999999999999999999877 666533 3566666666653 34
Q ss_pred HHHHHHHHHHHHHcCCCC-----CCchHHHHHHHHhhcccchHHHHHH
Q 048364 335 FDMAERVIKQALRMVKPE-----NDGGVFTLICDLYTMNEKWEGAERV 377 (400)
Q Consensus 335 ~~~a~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~ 377 (400)
..++.++|..-.. .|+ .+...|..++..|.+.|+++.|...
T Consensus 1332 lmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1332 MREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 5555555543322 132 3567899999999999999999843
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-15 Score=126.70 Aligned_cols=219 Identities=10% Similarity=0.001 Sum_probs=145.6
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHH
Q 048364 113 ASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILV 192 (400)
Q Consensus 113 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 192 (400)
..|..+...+...|++++|+..|++..+. . ++...+ ..+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~-~--~~~~~~-------------------------------------~~~~ 45 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWEL-H--KDITYL-------------------------------------NNRA 45 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-S--CCTHHH-------------------------------------HHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh-h--ccHHHH-------------------------------------HHHH
Confidence 45666667777777777777777776622 2 333444 4445
Q ss_pred HHHHhcCCHHHHHHHHHhccC--CC--------cccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048364 193 DMYAKCGFLKYALMVFELMEE--RN--------VISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACV 262 (400)
Q Consensus 193 ~~~~~~g~~~~A~~~~~~~~~--~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 262 (400)
.+|...|++++|...+++..+ |+ ...+..+...+...|++++|...|++.... .|+. ..+.
T Consensus 46 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~ 116 (258)
T 3uq3_A 46 AAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILT 116 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHH
Confidence 555555555555555555443 11 345566666667777777777777766664 2332 2355
Q ss_pred hcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHH
Q 048364 263 HTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAER 340 (400)
Q Consensus 263 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~ 340 (400)
..|++++|...++.+.+ ..+.+...+..+...+...|++++|...+++. ...| +..++..+..++...|++++|..
T Consensus 117 ~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 194 (258)
T 3uq3_A 117 KLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIA 194 (258)
T ss_dssp HHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHH
Confidence 56777777777777764 22234566777777788888888888888777 3333 46677777888888888888888
Q ss_pred HHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhcc
Q 048364 341 VIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
.++++++.. | .++.++..++.++...|++++|...+++..+.
T Consensus 195 ~~~~al~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 195 DCNKAIEKD-P-NFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHC-T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-H-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 888888877 7 67778888888888888888888888777654
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-15 Score=126.71 Aligned_cols=229 Identities=12% Similarity=0.042 Sum_probs=171.2
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHHhhCC--CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHh
Q 048364 81 AVTWNTMIKGYSKSGNVCEARDFFERMP--LRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGC 158 (400)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~ 158 (400)
...|..+...+...|++++|++.|++.. ..+...|..+..++...|++++|++.+++..+. .|+..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~--------- 72 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQ---GREMR--------- 72 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHTT---------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHh---Ccccc---------
Confidence 4568888999999999999999998764 267789999999999999999999999998721 11100
Q ss_pred hcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHHH
Q 048364 159 SHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238 (400)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 238 (400)
.+ ......++..+..+|...|++++|...|++..+.+.. ...+...|++++|...
T Consensus 73 ---~~-----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~ 127 (258)
T 3uq3_A 73 ---AD-----------------YKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKK 127 (258)
T ss_dssp ---CC-----------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHH
T ss_pred ---cc-----------------hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHH
Confidence 00 0011455666777777788888888887777652221 2345666778888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc
Q 048364 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP 317 (400)
Q Consensus 239 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p 317 (400)
++++.... +.+...+..+...+...|++++|...++.+.+. .+.+...+..+..+|...|++++|...+++. ...|
T Consensus 128 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 204 (258)
T 3uq3_A 128 AEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP 204 (258)
T ss_dssp HHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH
Confidence 88887752 224566777888888888888888888888753 2345677888888888889999998888887 4344
Q ss_pred -cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 318 -NVIIWGSFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 318 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
+...+..+..++...|++++|...++++.+..
T Consensus 205 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 205 NFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 46778888888888999999999888888765
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.70 E-value=6.1e-15 Score=133.16 Aligned_cols=343 Identities=12% Similarity=0.006 Sum_probs=221.7
Q ss_pred HHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCH---HHHHHHHhhCCCCChhhHHHHHHHHHcCC-
Q 048364 21 HILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSF---GFARKLFDELPERNAVTWNTMIKGYSKSG- 95 (400)
Q Consensus 21 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~---~~a~~~~~~~~~~~~~~~~~l~~~~~~~~- 95 (400)
.+...+.+.|++++|.++|+...+.| +...+..+-..+ ..|+. ++|...|++..+.++..+..+...+...+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCC
Confidence 35666778899999999999998876 344455555666 77777 99999999998777777888888666655
Q ss_pred ----ChHHHHHHHhhCCCC-ChhhHHHHHHHHHhcCCcch---HHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhh
Q 048364 96 ----NVCEARDFFERMPLR-NVASWSAMIAAYLNAGAYDP---GLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLL 167 (400)
Q Consensus 96 ----~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~---a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 167 (400)
++++|++.|++...+ +..++..|...|...+..++ +.+.+.... ..| +......+...|...+.++.
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~-~~g---~~~a~~~Lg~~y~~~~~~~~- 159 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQ-AAG---YPEAGLAQVLLYRTQGTYDQ- 159 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHH-HHT---CTTHHHHHHHHHHHHTCGGG-
T ss_pred CCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH-HCC---CHHHHHHHHHHHHcCCCccc-
Confidence 788999999987643 55678888888887765444 444444443 222 23455566666766676655
Q ss_pred hhhhhhhHHHhccccchHHHHHHHHHHHHhcC---CHHHHHHHHHhccCC---CcccHHHHHHHHHhC----CChhhHHH
Q 048364 168 MGKSAHGFIVKNEWELNEQIATILVDMYAKCG---FLKYALMVFELMEER---NVISWTALICGSAHR----GYSEDALS 237 (400)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~----~~~~~a~~ 237 (400)
+......+.+.-...++..+..|..+|...| +.++|.+.|++..+. +...+..+...|... +++++|+.
T Consensus 160 -~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 160 -HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp -GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred -CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 4433333333333334457788888888888 888888888887653 222335666666554 68889999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHH-H--HhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcC-----ChHHHHHH
Q 048364 238 LFEMMQATGVKPNEMTFTGVLTA-C--VHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG-----FLEEAYEV 309 (400)
Q Consensus 238 ~~~~m~~~~~~p~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~a~~~ 309 (400)
.|++.. .| +...+..+... + ...+++++|..+|++..+. | +...+..|...|. .| ++++|.+.
T Consensus 239 ~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~ 309 (452)
T 3e4b_A 239 LLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAH 309 (452)
T ss_dssp HHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHH
T ss_pred HHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHH
Confidence 998876 33 44455555555 3 4578899999999888743 3 6667777777777 45 88999999
Q ss_pred HHhccCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhc----ccchHHHHHHHHHH
Q 048364 310 IRTMRLEPNVIIWGSFLAACKE----HKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTM----NEKWEGAERVRKLM 381 (400)
Q Consensus 310 ~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m 381 (400)
|++.- .-+...+..+...|.. ..++++|..+|++..+.+ ++.....|...|.. ..+.++|..+++..
T Consensus 310 ~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g----~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 384 (452)
T 3e4b_A 310 FEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG----QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLA 384 (452)
T ss_dssp HHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT----CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHH
T ss_pred HHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC----hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 98886 5566777777777765 348899999999988876 34567777777764 45788888888888
Q ss_pred hcccc
Q 048364 382 LNQNV 386 (400)
Q Consensus 382 ~~~~~ 386 (400)
.+.|.
T Consensus 385 ~~~g~ 389 (452)
T 3e4b_A 385 KAQDT 389 (452)
T ss_dssp HTTCC
T ss_pred HHCCC
Confidence 77664
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=4.3e-15 Score=125.03 Aligned_cols=240 Identities=10% Similarity=-0.074 Sum_probs=170.1
Q ss_pred CCcchHHHHHHHHHhcCCCCC--CHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHH
Q 048364 126 GAYDPGLKLFREMISNEGLTP--DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKY 203 (400)
Q Consensus 126 g~~~~a~~~~~~m~~~~~~~p--~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 203 (400)
|++++|++.|+++.+.....| +..++..+..++...|+++. |...++.+.+.. +.+..++..+..+|...|++++
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRAL--ARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHH--HHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 455555555555552111111 23345555555555566655 555555555543 2246677788888999999999
Q ss_pred HHHHHHhccC---CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhh
Q 048364 204 ALMVFELMEE---RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEE 280 (400)
Q Consensus 204 A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 280 (400)
|...|++..+ .+...+..+...|...|++++|...++++.+. .|+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9999988875 35678888999999999999999999999885 455444555555667789999999999888754
Q ss_pred cCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCcc-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC
Q 048364 281 YDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPN-----VIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEND 354 (400)
Q Consensus 281 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 354 (400)
.+++...+ .++..+...++.++|.+.+++. ...|+ ...+..+...|...|++++|...++++++.. | .+
T Consensus 174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p-~~ 248 (275)
T 1xnf_A 174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN-V-HN 248 (275)
T ss_dssp --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-C-TT
T ss_pred --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-c-hh
Confidence 23444444 4777888889999999999987 43342 5788899999999999999999999999988 7 45
Q ss_pred chHHHHHHHHhhcccchHHHHHHH
Q 048364 355 GGVFTLICDLYTMNEKWEGAERVR 378 (400)
Q Consensus 355 ~~~~~~l~~~~~~~g~~~~a~~~~ 378 (400)
...+ ..++...|++++|++.+
T Consensus 249 ~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHHH---HHHHHHHHHHHHC----
T ss_pred HHHH---HHHHHHHHHHHhhHHHH
Confidence 4433 55777889999988766
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.67 E-value=8.8e-15 Score=122.97 Aligned_cols=244 Identities=10% Similarity=-0.023 Sum_probs=143.1
Q ss_pred hHHHHHHHHHcCCChHHHHHHHhhCC---CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhh
Q 048364 83 TWNTMIKGYSKSGNVCEARDFFERMP---LRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCS 159 (400)
Q Consensus 83 ~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~ 159 (400)
.+......+...|++++|++.|++.. +.+...+..+..+|...|++++|++.+++.. ..+ ++...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~--~~~~~--------- 72 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYF-SKV--NATKA--------- 72 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHH-TTS--CTTTC---------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH-hcc--CchhH---------
Confidence 34445555666666666666666643 2244466666666666666666666666666 221 11111
Q ss_pred cccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHhCCChhhHH
Q 048364 160 HLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE---RNVISWTALICGSAHRGYSEDAL 236 (400)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 236 (400)
....+..+..+|...|++++|...|++..+ .+...+..+...|...|++++|+
T Consensus 73 ------------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 128 (272)
T 3u4t_A 73 ------------------------KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAI 128 (272)
T ss_dssp ------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred ------------------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHH
Confidence 122345556666666666666666666554 23455666666666777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCC---hHHHHHHHHhc
Q 048364 237 SLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF---LEEAYEVIRTM 313 (400)
Q Consensus 237 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~ 313 (400)
..|++..+.. +.+...+..+...+...+++++|...++.+.+. .+.+...+..+..++...|+ +++|...+++.
T Consensus 129 ~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 205 (272)
T 3u4t_A 129 QYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKL 205 (272)
T ss_dssp HHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHH
T ss_pred HHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHH
Confidence 7766665541 223445555552333344777777777777642 12235556666666666666 66666666655
Q ss_pred ----cCCcc------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhc
Q 048364 314 ----RLEPN------VIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTM 367 (400)
Q Consensus 314 ----~~~p~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 367 (400)
...|+ ..+|..+...|...|++++|...++++.+.. | .++.+...+......
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p-~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 206 IEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD-P-TNKKAIDGLKMKLEH 267 (272)
T ss_dssp HHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-TCHHHHHHHC-----
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-c-cHHHHHHHhhhhhcc
Confidence 11233 2467777788888888888888888888888 7 677666666554443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.8e-14 Score=119.70 Aligned_cols=196 Identities=12% Similarity=-0.042 Sum_probs=156.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048364 185 EQIATILVDMYAKCGFLKYALMVFELMEE---RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTAC 261 (400)
Q Consensus 185 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 261 (400)
...+..+...|...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 56677788888888888888888887764 345677778888888888888888888887763 23567788888888
Q ss_pred HhcCChhhHHHHHHHhhhhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHH
Q 048364 262 VHTGLVDEGRKYFKMIDEEYDLEP-RIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMA 338 (400)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a 338 (400)
...|++++|..+++.+.+ .+..| +...+..+..+|...|++++|.+.+++. ...| +...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 888999999988888874 22344 4567778888888889999999888887 3334 567788888888889999999
Q ss_pred HHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhcc
Q 048364 339 ERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
...++++.+.. | .+...+..+..++...|++++|.+.++++.+.
T Consensus 195 ~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGG-G-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTS-C-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-c-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999988877 7 77888888888888889999999888888764
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.4e-14 Score=114.41 Aligned_cols=197 Identities=12% Similarity=-0.046 Sum_probs=151.5
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048364 184 NEQIATILVDMYAKCGFLKYALMVFELMEE---RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTA 260 (400)
Q Consensus 184 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 260 (400)
+..++..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.... +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 456677778888888888888888887764 345677778888888888888888888887753 3356777888888
Q ss_pred HHhc-CChhhHHHHHHHhhhhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHH
Q 048364 261 CVHT-GLVDEGRKYFKMIDEEYDLEP-RIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFD 336 (400)
Q Consensus 261 ~~~~-~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~ 336 (400)
+... |++++|...++.+.+ .+..| +...+..+..++...|++++|...++++ ...| +...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 8888 888888888888875 22333 3566777888888888888888888887 3344 4667788888888888888
Q ss_pred HHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 337 MAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 337 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
+|...++++.+.. |..+...+..+...+...|+.+.|..+++.+.+
T Consensus 165 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 8888888888877 534666777777788888888888888887764
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=8e-15 Score=120.97 Aligned_cols=191 Identities=13% Similarity=0.060 Sum_probs=80.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048364 188 ATILVDMYAKCGFLKYALMVFELMEE---RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHT 264 (400)
Q Consensus 188 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 264 (400)
+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 104 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVK 104 (243)
T ss_dssp ----------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHh
Confidence 33334444444444444444444432 122334444444444445555555444444431 11334444444444555
Q ss_pred CChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHH
Q 048364 265 GLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVI 342 (400)
Q Consensus 265 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~ 342 (400)
|++++|.+.++++.+. .+.+...+..+...+...|++++|.+.++++ ...| +...+..+...+...|++++|...+
T Consensus 105 ~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 182 (243)
T 2q7f_A 105 EMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQF 182 (243)
T ss_dssp TCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5555555555544432 1223344444445555555555555555544 2222 3344444445555555555555555
Q ss_pred HHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 343 KQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
+++.+.. | .+..++..++.+|...|++++|...++++.+
T Consensus 183 ~~~~~~~-~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 183 AAVTEQD-P-GHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHC-T-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHhC-c-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 5555544 4 4444555555555555555555555554443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-14 Score=129.75 Aligned_cols=268 Identities=14% Similarity=0.068 Sum_probs=133.3
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHhhCC--CC-C----hhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHH
Q 048364 82 VTWNTMIKGYSKSGNVCEARDFFERMP--LR-N----VASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAV 154 (400)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~-~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 154 (400)
..+......+...|++++|+..|++.. .| + ...|..+...+...|++++|...+++......-..+
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~------- 82 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD------- 82 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-------
Confidence 344455555666666666666666543 22 2 234555666666666666666666666521100000
Q ss_pred HHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC-----CC----cccHHHHHHH
Q 048364 155 LSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE-----RN----VISWTALICG 225 (400)
Q Consensus 155 l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~ 225 (400)
.+....++..+...|...|++++|...+++..+ ++ ..++..+...
T Consensus 83 --------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 136 (406)
T 3sf4_A 83 --------------------------QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNV 136 (406)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred --------------------------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 011233444455555555555555555554432 11 2244455555
Q ss_pred HHhCCC--------------------hhhHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHhhhh
Q 048364 226 SAHRGY--------------------SEDALSLFEMMQAT----GVKP-NEMTFTGVLTACVHTGLVDEGRKYFKMIDEE 280 (400)
Q Consensus 226 ~~~~~~--------------------~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 280 (400)
|...|+ +++|...+++.... +..| ...++..+...+...|++++|...+++..+.
T Consensus 137 ~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (406)
T 3sf4_A 137 YHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 216 (406)
T ss_dssp HHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH
T ss_pred HHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 555555 55555555544321 1111 1234455555556666666666666555432
Q ss_pred cCCCCC----hhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048364 281 YDLEPR----IQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-------NVIIWGSFLAACKEHKQFDMAERVIKQALRM 348 (400)
Q Consensus 281 ~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 348 (400)
..-.++ ..++..+...|...|++++|...+++. .+.| ...++..+...|...|++++|...++++.+.
T Consensus 217 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 217 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 111111 124555555666666666666666554 1111 1334555556666666666666666665554
Q ss_pred CCCC-----CCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 349 VKPE-----NDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 349 ~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
. +. ....++..++.+|...|++++|.+.+++..+
T Consensus 297 ~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 297 A-QELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp H-HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred H-HhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 10 1134555566666666666666666555543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.64 E-value=3.5e-14 Score=124.46 Aligned_cols=228 Identities=12% Similarity=0.093 Sum_probs=181.8
Q ss_pred ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHH
Q 048364 111 NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATI 190 (400)
Q Consensus 111 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 190 (400)
+..+|+.+..++.+.|++++|++.|++.+ .+.|+ +..+|+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al---~l~P~------------------------------------~~~a~~~ 136 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAI---ELNAA------------------------------------NYTVWHF 136 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHH---HHCTT------------------------------------CHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHH---HhCcc------------------------------------CHHHHHH
Confidence 34678888888889999999999999887 23444 3445566
Q ss_pred HHHHHHhcCC-HHHHHHHHHhccC---CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048364 191 LVDMYAKCGF-LKYALMVFELMEE---RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGL 266 (400)
Q Consensus 191 l~~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 266 (400)
+..++...|+ +++|+..|+++.+ .+...|+.+..++...|++++|+..|+++.+... -+...|..+..++...|+
T Consensus 137 ~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~ 215 (382)
T 2h6f_A 137 RRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKL 215 (382)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCC
Confidence 6677777886 8888888888875 3556788888899999999999999999988642 367888899999999999
Q ss_pred hhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHh-cCChHHH-----HHHHHhc-cCCc-cHHHHHHHHHHHHhcC--CHH
Q 048364 267 VDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK-AGFLEEA-----YEVIRTM-RLEP-NVIIWGSFLAACKEHK--QFD 336 (400)
Q Consensus 267 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a-----~~~~~~~-~~~p-~~~~~~~l~~~~~~~~--~~~ 336 (400)
+++|+..++++.+. -+.+...|+.+..++.+ .|..++| ++.|++. .+.| +...|+.+..++...| +++
T Consensus 216 ~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~ 293 (382)
T 2h6f_A 216 WDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYP 293 (382)
T ss_dssp CTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCH
T ss_pred hHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchH
Confidence 99999999999853 23467889999999998 6665777 4777776 5556 5668888888888887 689
Q ss_pred HHHHHHHHHHHcCCCCCCchHHHHHHHHhhccc---------chHHHHHHHHHH-hc
Q 048364 337 MAERVIKQALRMVKPENDGGVFTLICDLYTMNE---------KWEGAERVRKLM-LN 383 (400)
Q Consensus 337 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------~~~~a~~~~~~m-~~ 383 (400)
+|...++++ +.. | .+...+..++.+|.+.| .+++|.++++++ .+
T Consensus 294 ~a~~~~~~~-~~~-p-~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 294 NLLNQLLDL-QPS-H-SSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHH-TTT-C-CCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHh-ccC-C-CCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH
Confidence 999999998 665 7 78889999999998874 358999999998 44
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=2e-13 Score=114.80 Aligned_cols=222 Identities=9% Similarity=-0.071 Sum_probs=107.8
Q ss_pred ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhc----ccchhhhhhhhhhhHHHhccccchHH
Q 048364 111 NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSH----LGSVGLLMGKSAHGFIVKNEWELNEQ 186 (400)
Q Consensus 111 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~ 186 (400)
+..++..+...+...|++++|++.|++.. . +-+...+..+...+.. .+++++ |...+....+.+ +..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~-~---~~~~~a~~~lg~~~~~g~~~~~~~~~--A~~~~~~a~~~~---~~~ 75 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKAC-D---LKENSGCFNLGVLYYQGQGVEKNLKK--AASFYAKACDLN---YSN 75 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHH-H---TTCHHHHHHHHHHHHHTSSSCCCHHH--HHHHHHHHHHTT---CHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHH-H---CCCHHHHHHHHHHHHcCCCcCCCHHH--HHHHHHHHHHCC---CHH
Confidence 44555666666666667777777776665 2 1122333334444444 444444 444444444333 333
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHHhccC-CCcccHHHHHHHHHh----CCChhhHHHHHHHHHHCCCCCCHHHHHHH
Q 048364 187 IATILVDMYAK----CGFLKYALMVFELMEE-RNVISWTALICGSAH----RGYSEDALSLFEMMQATGVKPNEMTFTGV 257 (400)
Q Consensus 187 ~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 257 (400)
.+..+...|.. .+++++|...|++..+ .+...+..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 76 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 76 GCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 44444445555 5555555555554443 233344444455555 555555555555555443 33344444
Q ss_pred HHHHHh----cCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHhc-cCCccHHHHHHHHHH
Q 048364 258 LTACVH----TGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK----AGFLEEAYEVIRTM-RLEPNVIIWGSFLAA 328 (400)
Q Consensus 258 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~-~~~p~~~~~~~l~~~ 328 (400)
...+.. .+++++|...+++..+. .+...+..+...|.. .+++++|.+.|++. ...| ...+..+...
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-~~a~~~l~~~ 227 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-GGGCFNLGAM 227 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC-HHHHHHHHHH
Confidence 444444 45555555555555431 123344444555555 55555555555544 2222 3344444444
Q ss_pred HHh----cCCHHHHHHHHHHHHHcC
Q 048364 329 CKE----HKQFDMAERVIKQALRMV 349 (400)
Q Consensus 329 ~~~----~~~~~~a~~~~~~~~~~~ 349 (400)
|.. .+++++|...+++..+.+
T Consensus 228 ~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 228 QYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHcCCCcccCHHHHHHHHHHHHHcC
Confidence 444 455555555555555554
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.6e-14 Score=117.90 Aligned_cols=209 Identities=14% Similarity=0.072 Sum_probs=149.6
Q ss_pred HHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHH
Q 048364 150 TIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE---RNVISWTALICGS 226 (400)
Q Consensus 150 ~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 226 (400)
.+..+...+...|+++. |...++.+.+.. +.+...+..+..+|...|++++|...|+++.+ .+...+..+...+
T Consensus 25 ~~~~~a~~~~~~~~~~~--A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEK--AAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVY 101 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHH--HHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 44444555555555555 555555555432 22456667777888888888888888887764 3556778888889
Q ss_pred HhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHH
Q 048364 227 AHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA 306 (400)
Q Consensus 227 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 306 (400)
...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999988764 336677888888999999999999999998853 244677888899999999999999
Q ss_pred HHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhh
Q 048364 307 YEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYT 366 (400)
Q Consensus 307 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 366 (400)
.+.+++. ...| +..++..+..+|...|++++|...++++.+.. | .+..++..+.....
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p-~~~~~~~~~~~l~~ 238 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ-P-DHMLALHAKKLLGH 238 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC-T-TCHHHHHHHTC---
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC-c-chHHHHHHHHHHHh
Confidence 9999988 3334 56788889999999999999999999999998 7 67777666554433
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.63 E-value=5.3e-15 Score=132.27 Aligned_cols=267 Identities=11% Similarity=0.008 Sum_probs=167.3
Q ss_pred HHHHHHHHHcCCChHHHHHHHhhCC--CC-Ch----hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 048364 84 WNTMIKGYSKSGNVCEARDFFERMP--LR-NV----ASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLS 156 (400)
Q Consensus 84 ~~~l~~~~~~~~~~~~a~~~~~~~~--~~-~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~ 156 (400)
+..+...+...|++++|+..|++.. .| +. ..|..+...|...|++++|...+++..+...-..
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---------- 120 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMN---------- 120 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT----------
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc----------
Confidence 3344455556666666666665543 12 21 2455555566666666666666665551100000
Q ss_pred HhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCC---------CcccHHHHHHHHH
Q 048364 157 GCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEER---------NVISWTALICGSA 227 (400)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~ 227 (400)
.......++..+...|...|++++|...+++..+. ...++..+...|.
T Consensus 121 -----------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 177 (411)
T 4a1s_A 121 -----------------------DRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYH 177 (411)
T ss_dssp -----------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred -----------------------CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence 01123445666667777777777777777665431 1235666677777
Q ss_pred hCCC-----------------hhhHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCC
Q 048364 228 HRGY-----------------SEDALSLFEMMQAT----GVKP-NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP 285 (400)
Q Consensus 228 ~~~~-----------------~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 285 (400)
..|+ +++|+..+++..+. +..+ ...++..+...+...|++++|...+++..+...-.+
T Consensus 178 ~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 7777 77777777665432 1111 224667777788888888888888887764211111
Q ss_pred C----hhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---
Q 048364 286 R----IQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-------NVIIWGSFLAACKEHKQFDMAERVIKQALRMVK--- 350 (400)
Q Consensus 286 ~----~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--- 350 (400)
+ ...+..+..+|...|++++|.+.+++. ...| ...++..+...+...|++++|...++++++...
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 1 236777888888888888888888876 1111 245677788888888999999988888877541
Q ss_pred -CCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 351 -PENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 351 -~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
+.....++..++.+|...|++++|.+.+++..+
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 102245778888888888999999888887764
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.63 E-value=6.5e-14 Score=117.63 Aligned_cols=233 Identities=10% Similarity=0.016 Sum_probs=175.0
Q ss_pred hhhHHHHHH-HhCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHhhCCC--CCh----hhHHHHHHHH
Q 048364 53 VATSLLHEY-VVTSFGFARKLFDELPE--R-NAVTWNTMIKGYSKSGNVCEARDFFERMPL--RNV----ASWSAMIAAY 122 (400)
Q Consensus 53 ~~~~l~~~~-~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~----~~~~~l~~~~ 122 (400)
.+......+ ..|++++|+..|++..+ | +...+..+...+...|++++|++.|++... ++. .+|..+...+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 344555666 99999999999998863 3 556899999999999999999999998753 232 3488999999
Q ss_pred HhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHH
Q 048364 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLK 202 (400)
Q Consensus 123 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 202 (400)
...|++++|++.|++..+. .|+ +..++..+..+|...|+++
T Consensus 85 ~~~~~~~~A~~~~~~a~~~---~~~------------------------------------~~~~~~~l~~~~~~~~~~~ 125 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDR---DTT------------------------------------RLDMYGQIGSYFYNKGNFP 125 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHH---STT------------------------------------CTHHHHHHHHHHHHTTCHH
T ss_pred HHcccHHHHHHHHHHHHhc---Ccc------------------------------------cHHHHHHHHHHHHHccCHH
Confidence 9999999999999999821 222 2345667778888889999
Q ss_pred HHHHHHHhccCC---CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---hhhHHHHHHH
Q 048364 203 YALMVFELMEER---NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGL---VDEGRKYFKM 276 (400)
Q Consensus 203 ~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~ 276 (400)
+|...|++..+. +...+..+...+...+++++|...|++..+.. +.+...+..+..++...++ +++|...+++
T Consensus 126 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 204 (272)
T 3u4t_A 126 LAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEK 204 (272)
T ss_dssp HHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHH
T ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHH
Confidence 999999888762 34556666624444569999999999988763 2246677777888888888 8888888888
Q ss_pred hhhhcCCCCCh------hhHHHHHHHHHhcCChHHHHHHHHhc-cCCcc-HHHHHHH
Q 048364 277 IDEEYDLEPRI------QHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPN-VIIWGSF 325 (400)
Q Consensus 277 ~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~-~~~~~~l 325 (400)
+.+...-.|+. .+|..+...|...|++++|.+.|++. .+.|+ ...+..+
T Consensus 205 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 261 (272)
T 3u4t_A 205 LIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGL 261 (272)
T ss_dssp HHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHh
Confidence 87543333442 56778888999999999999999988 55564 3344333
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-13 Score=114.26 Aligned_cols=204 Identities=14% Similarity=0.013 Sum_probs=150.7
Q ss_pred hhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHH
Q 048364 112 VASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATIL 191 (400)
Q Consensus 112 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 191 (400)
...|..+...+...|++++|.+.|+++.+. .|+ +...+..+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~------------------------------------~~~~~~~l 77 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI---DPS------------------------------------SADAHAAL 77 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH---CTT------------------------------------CHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCC------------------------------------hHHHHHHH
Confidence 456666777777777777777777776621 121 33455566
Q ss_pred HHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCh
Q 048364 192 VDMYAKCGFLKYALMVFELMEE---RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKP-NEMTFTGVLTACVHTGLV 267 (400)
Q Consensus 192 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~ 267 (400)
..+|...|++++|.+.|+++.+ .+...+..+...+...|++++|...++++...+..| +...+..+..++...|++
T Consensus 78 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 157 (252)
T 2ho1_A 78 AVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKP 157 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCH
Confidence 6677777777777777777654 245567777788888888888888888887633344 456777788888889999
Q ss_pred hhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048364 268 DEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQA 345 (400)
Q Consensus 268 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 345 (400)
++|...++++.+. .+.+...+..+...|...|++++|...+++. ...| +...+..+...+...|++++|...++++
T Consensus 158 ~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 235 (252)
T 2ho1_A 158 AQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQL 235 (252)
T ss_dssp HHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999888853 2345677888888999999999999999888 3334 5667888888889999999999999999
Q ss_pred HHcCCCCCCchHH
Q 048364 346 LRMVKPENDGGVF 358 (400)
Q Consensus 346 ~~~~~~~~~~~~~ 358 (400)
.+.. | .++...
T Consensus 236 ~~~~-p-~~~~~~ 246 (252)
T 2ho1_A 236 KRLY-P-GSLEYQ 246 (252)
T ss_dssp HHHC-T-TSHHHH
T ss_pred HHHC-C-CCHHHH
Confidence 9988 6 555443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.62 E-value=4e-14 Score=124.08 Aligned_cols=244 Identities=8% Similarity=0.019 Sum_probs=182.1
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHHhhCC---CCChhhHHHHHHHHHhcCC-cchHHHHHHHHHhcCCCCCCHHHHHHHH
Q 048364 80 NAVTWNTMIKGYSKSGNVCEARDFFERMP---LRNVASWSAMIAAYLNAGA-YDPGLKLFREMISNEGLTPDQMTIGAVL 155 (400)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~~~~ll 155 (400)
+...|+.+...+.+.|++++|++.|++.. ..+..+|+.+..++...|+ +++|+..|+++. .+.|+
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al---~l~P~-------- 164 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAII---EEQPK-------- 164 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH---HHCTT--------
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHH---HHCCC--------
Confidence 34678888899999999999999999876 3467899999999999997 999999999998 23443
Q ss_pred HHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHhCCCh
Q 048364 156 SGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE---RNVISWTALICGSAHRGYS 232 (400)
Q Consensus 156 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 232 (400)
+..+|..+..++...|++++|...|+++.+ .+...|..+..++...|++
T Consensus 165 ----------------------------~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~ 216 (382)
T 2h6f_A 165 ----------------------------NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLW 216 (382)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred ----------------------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCCh
Confidence 333445555566666777777777777664 3556777777888888888
Q ss_pred hhHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChhhH-----HHHHHHhhhhcCCCCChhhHHHHHHHHHhcC--ChH
Q 048364 233 EDALSLFEMMQATGVKPNEMTFTGVLTACVH-TGLVDEG-----RKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG--FLE 304 (400)
Q Consensus 233 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~~~~~~a-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~ 304 (400)
++|+..|+++++... -+...|+.+..++.. .|..++| +..+++..+. -+.+...|..+...+...| +++
T Consensus 217 ~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~ 293 (382)
T 2h6f_A 217 DNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYP 293 (382)
T ss_dssp TTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCH
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchH
Confidence 888888888887643 256778888888887 5555777 4777777742 2335677888888888877 688
Q ss_pred HHHHHHHhccCCc-cHHHHHHHHHHHHhcC---------CHHHHHHHHHHH-HHcCCCCCCchHHHHHHHHhhc
Q 048364 305 EAYEVIRTMRLEP-NVIIWGSFLAACKEHK---------QFDMAERVIKQA-LRMVKPENDGGVFTLICDLYTM 367 (400)
Q Consensus 305 ~a~~~~~~~~~~p-~~~~~~~l~~~~~~~~---------~~~~a~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~ 367 (400)
+|.+.+.++...| +...+..+..+|.+.| ..++|..+++++ .+.+ | .....|..+...+..
T Consensus 294 ~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~D-P-~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 294 NLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKD-T-IRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTC-G-GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhC-c-hhHHHHHHHHHHHHH
Confidence 8888888874444 5567888888888764 258899999999 7887 7 677777777665543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.62 E-value=5.5e-14 Score=126.88 Aligned_cols=312 Identities=10% Similarity=-0.019 Sum_probs=216.4
Q ss_pred HHHHH-HhCCHHHHHHHHhhCCCC-ChhhHHHHHHHHHcCCCh---HHHHHHHhhCCCCChhhHHHHHHHHHhcC-----
Q 048364 57 LLHEY-VVTSFGFARKLFDELPER-NAVTWNTMIKGYSKSGNV---CEARDFFERMPLRNVASWSAMIAAYLNAG----- 126 (400)
Q Consensus 57 l~~~~-~~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~l~~~~~~~g----- 126 (400)
+...+ +.|++++|..+|++..++ +...+..+...|...|+. ++|++.|++....++..+..+...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCc
Confidence 44555 899999999999988653 555666677777778888 99999999988667788888888666655
Q ss_pred CcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcC----CHH
Q 048364 127 AYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCG----FLK 202 (400)
Q Consensus 127 ~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~ 202 (400)
++++|+..|++.. ..|. |+ .+..+...|...+.... +...+..+.+....-++.....|...|...+ +.+
T Consensus 89 ~~~~A~~~~~~Aa-~~g~-~~--A~~~Lg~~y~~~~~~~~--~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 89 EHHEAESLLKKAF-ANGE-GN--TLIPLAMLYLQYPHSFP--NVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp HHHHHHHHHHHHH-HTTC-SS--CHHHHHHHHHHCGGGCT--TCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHH
T ss_pred CHHHHHHHHHHHH-HCCC-HH--HHHHHHHHHHhCCCCCC--CHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHH
Confidence 7789999999998 4443 22 66667777777776665 5555555444332334566777888888887 455
Q ss_pred HHHHHHHhccCCCcccHHHHHHHHHhCC---ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CChhhHHHHHH
Q 048364 203 YALMVFELMEERNVISWTALICGSAHRG---YSEDALSLFEMMQATGVKPNEMTFTGVLTACVHT----GLVDEGRKYFK 275 (400)
Q Consensus 203 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~----~~~~~a~~~~~ 275 (400)
.+..+++.....++..+..+...|...| +.++|+..|++..+.| .++...+..+...|... +++++|..+|+
T Consensus 163 ~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~ 241 (452)
T 3e4b_A 163 DVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLE 241 (452)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 5666777777777779999999999999 9999999999999887 44566556677777655 78999999999
Q ss_pred HhhhhcCCCCChhhHHHHHHH-H--HhcCChHHHHHHHHhccCCccHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHH
Q 048364 276 MIDEEYDLEPRIQHYGCMVDL-F--GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHK-----QFDMAERVIKQALR 347 (400)
Q Consensus 276 ~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~ 347 (400)
... +.++..+..+... | ...+++++|.+.|++.--..+...+..+...|. .| ++++|...|++..
T Consensus 242 ~aa-----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa- 314 (452)
T 3e4b_A 242 KIA-----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV- 314 (452)
T ss_dssp HHG-----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-
T ss_pred HHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-
Confidence 886 2456677777777 4 568999999999999821236667777777776 55 9999999999998
Q ss_pred cCCCCCCchHHHHHHHHhhc----ccchHHHHHHHHHHhcccc
Q 048364 348 MVKPENDGGVFTLICDLYTM----NEKWEGAERVRKLMLNQNV 386 (400)
Q Consensus 348 ~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 386 (400)
. .++..+..|...|.. ..++++|...+++..+.|.
T Consensus 315 ~----g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 315 G----REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp T----TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred C----CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 3 477888999988877 4499999999999887664
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-14 Score=125.74 Aligned_cols=200 Identities=13% Similarity=0.030 Sum_probs=148.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhccC-----CC----cccHHHHHHHHHhCCC--------------------hhhH
Q 048364 185 EQIATILVDMYAKCGFLKYALMVFELMEE-----RN----VISWTALICGSAHRGY--------------------SEDA 235 (400)
Q Consensus 185 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~a 235 (400)
..++..+...|...|++++|...+++..+ ++ ..++..+...+...|+ +++|
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 45667778888888888888888877654 12 2367777788888888 8888
Q ss_pred HHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCC----hhhHHHHHHHHHhcCChHHH
Q 048364 236 LSLFEMMQAT----GVKP-NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR----IQHYGCMVDLFGKAGFLEEA 306 (400)
Q Consensus 236 ~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a 306 (400)
...+++.... +..| ....+..+...+...|++++|...++...+.....++ ..++..+...+...|++++|
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 8888776442 1111 2346777888889999999999999887642111111 33778888999999999999
Q ss_pred HHHHHhc-cCCc-------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCCCchHHHHHHHHhhcccchHHH
Q 048364 307 YEVIRTM-RLEP-------NVIIWGSFLAACKEHKQFDMAERVIKQALRMVK----PENDGGVFTLICDLYTMNEKWEGA 374 (400)
Q Consensus 307 ~~~~~~~-~~~p-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a 374 (400)
.+.+++. ...| ...++..+...+...|++++|...++++.+... +.....++..+..+|...|++++|
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 322 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 322 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 9999887 1111 145778888999999999999999999887641 111245788899999999999999
Q ss_pred HHHHHHHhcc
Q 048364 375 ERVRKLMLNQ 384 (400)
Q Consensus 375 ~~~~~~m~~~ 384 (400)
...+++..+.
T Consensus 323 ~~~~~~a~~~ 332 (338)
T 3ro2_A 323 MHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 9999988763
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=9.2e-14 Score=123.78 Aligned_cols=93 Identities=11% Similarity=0.025 Sum_probs=55.3
Q ss_pred CCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccc---hhhhhHHHHHH-HhCCHHHHHHHHhhCCC-----C----C
Q 048364 14 SDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISH---VYVATSLLHEY-VVTSFGFARKLFDELPE-----R----N 80 (400)
Q Consensus 14 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~-~~g~~~~a~~~~~~~~~-----~----~ 80 (400)
+....+......+...|++++|...|+++++...... ..++..+...+ ..|++++|...+++... . .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3445566777777888888888888888887643311 23555666666 77777777777665431 0 1
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHHhh
Q 048364 81 AVTWNTMIKGYSKSGNVCEARDFFER 106 (400)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~a~~~~~~ 106 (400)
..++..+...+...|++++|+..|++
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~ 112 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQR 112 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 22344444444445555555544444
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.5e-14 Score=114.99 Aligned_cols=110 Identities=16% Similarity=0.035 Sum_probs=43.2
Q ss_pred CCHHHHHHHHHhccC--C-CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 048364 199 GFLKYALMVFELMEE--R-NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFK 275 (400)
Q Consensus 199 g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 275 (400)
|++++|...|++..+ | +...+..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|...|+
T Consensus 98 g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~ 175 (217)
T 2pl2_A 98 GYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYA 175 (217)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444445444444432 2 22334444444444455555555554444443 344444444444444455555544444
Q ss_pred HhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHh
Q 048364 276 MIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRT 312 (400)
Q Consensus 276 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 312 (400)
.+.+. .+.+...+..+...+...|++++|...|++
T Consensus 176 ~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 176 KALEQ--APKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHH--STTCHHHHHHHHHHHTC-------------
T ss_pred HHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 44421 122333444444444444444444444443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=5.2e-13 Score=112.26 Aligned_cols=223 Identities=11% Similarity=-0.057 Sum_probs=192.9
Q ss_pred CHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHh----cCCHHHHHHHHHhccC-CCcccHHH
Q 048364 147 DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAK----CGFLKYALMVFELMEE-RNVISWTA 221 (400)
Q Consensus 147 ~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~ 221 (400)
+..++..+...+...|++++ |...+....+.+ +...+..+...|.. .+++++|...|++..+ .+...+..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~--A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~ 79 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQ--AKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHL 79 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHH--HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 45677778888999999999 999999988843 45678889999999 9999999999998876 46678888
Q ss_pred HHHHHHh----CCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHhhhhcCCCCChhhHHHH
Q 048364 222 LICGSAH----RGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVH----TGLVDEGRKYFKMIDEEYDLEPRIQHYGCM 293 (400)
Q Consensus 222 l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 293 (400)
+...|.. .+++++|+..|++..+.+ +...+..+...+.. .+++++|...|++..+. + +...+..+
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~l 152 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHH
Confidence 9999999 999999999999999875 67888889999999 99999999999999853 3 56678888
Q ss_pred HHHHHh----cCChHHHHHHHHhc-cCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHH
Q 048364 294 VDLFGK----AGFLEEAYEVIRTM-RLEPNVIIWGSFLAACKE----HKQFDMAERVIKQALRMVKPENDGGVFTLICDL 364 (400)
Q Consensus 294 ~~~~~~----~g~~~~a~~~~~~~-~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 364 (400)
...|.. .+++++|.+.|++. .. .+...+..+...|.. .+++++|...+++..+.+ + +..+..+..+
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~---~~a~~~l~~~ 227 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDL-KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-N---GGGCFNLGAM 227 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-C---HHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-C---HHHHHHHHHH
Confidence 889988 99999999999988 32 356778888899999 999999999999999987 4 6788899999
Q ss_pred hhc----ccchHHHHHHHHHHhcccc
Q 048364 365 YTM----NEKWEGAERVRKLMLNQNV 386 (400)
Q Consensus 365 ~~~----~g~~~~a~~~~~~m~~~~~ 386 (400)
|.. .+++++|.+.+++..+.+.
T Consensus 228 ~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 228 QYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 998 9999999999999987653
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=9.4e-13 Score=119.89 Aligned_cols=292 Identities=11% Similarity=0.000 Sum_probs=205.7
Q ss_pred chhhhhHHHHHH-HhCCHHHHHHHHhhCCC-----------C-ChhhHHHHHHHHHcCCChHHHHHHHhhCC-------C
Q 048364 50 HVYVATSLLHEY-VVTSFGFARKLFDELPE-----------R-NAVTWNTMIKGYSKSGNVCEARDFFERMP-------L 109 (400)
Q Consensus 50 ~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~-----------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~ 109 (400)
....|+.+...+ ..|++++|++.|++..+ + ...+|+.+..+|...|++++|...|++.. .
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 456788888888 99999999999987542 2 35679999999999999999999987753 1
Q ss_pred ----CChhhHHHHHHHHHhc--CCcchHHHHHHHHHhcCCCCCCH-HHHHHHHHHhh---cccchhhhhhhhhhhHHHhc
Q 048364 110 ----RNVASWSAMIAAYLNA--GAYDPGLKLFREMISNEGLTPDQ-MTIGAVLSGCS---HLGSVGLLMGKSAHGFIVKN 179 (400)
Q Consensus 110 ----~~~~~~~~l~~~~~~~--g~~~~a~~~~~~m~~~~~~~p~~-~~~~~ll~~~~---~~~~~~~~~a~~~~~~~~~~ 179 (400)
....++..+..++.+. +++++|++.|++..+ +.|+. ..+..+..++. ..++.+. +...++...+.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~---~~p~~~~~~~~~~~~~~~l~~~~~~~~--al~~~~~al~l 204 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALE---KKPKNPEFTSGLAIASYRLDNWPPSQN--AIDPLRQAIRL 204 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHHHSCCCCC--THHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCchHHHH--HHHHHHHHhhc
Confidence 1345666666666554 569999999999983 34543 34444444433 4455566 66667666665
Q ss_pred cccchHHHHHHHHHHHHh----cCCHHHHHHHHHhccC---CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHH
Q 048364 180 EWELNEQIATILVDMYAK----CGFLKYALMVFELMEE---RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEM 252 (400)
Q Consensus 180 ~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 252 (400)
.. .+..++..+...+.. .|++++|.+.+++... .+...+..+...|...|++++|+..+++..+.. +-+..
T Consensus 205 ~p-~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 282 (472)
T 4g1t_A 205 NP-DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAY 282 (472)
T ss_dssp CS-SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHH
T ss_pred CC-cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHH
Confidence 42 244555555555444 4678889999988764 355678889999999999999999999998863 22455
Q ss_pred HHHHHHHHHHhc-------------------CChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc
Q 048364 253 TFTGVLTACVHT-------------------GLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313 (400)
Q Consensus 253 ~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 313 (400)
++..+..+|... +..+.|...++...+. .+.+...+..+...|...|++++|.+.|++.
T Consensus 283 ~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ka 360 (472)
T 4g1t_A 283 LHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA--NDNLFRVCSILASLHALADQYEEAEYYFQKE 360 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--CCchhhhhhhHHHHHHHhccHHHHHHHHHHH
Confidence 666665555322 2356778888877743 2445677888999999999999999999987
Q ss_pred -cCCccHH----HHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCC
Q 048364 314 -RLEPNVI----IWGSFLA-ACKEHKQFDMAERVIKQALRMVKP 351 (400)
Q Consensus 314 -~~~p~~~----~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~ 351 (400)
...|+.. .+..+.. .....|++++|+..++++++.. |
T Consensus 361 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~-~ 403 (472)
T 4g1t_A 361 FSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN-Q 403 (472)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC-C
T ss_pred HhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-c
Confidence 4444332 2333332 3457899999999999999988 6
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.1e-13 Score=109.11 Aligned_cols=206 Identities=12% Similarity=-0.000 Sum_probs=152.4
Q ss_pred ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHH
Q 048364 111 NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATI 190 (400)
Q Consensus 111 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 190 (400)
+...|..+...+...|++++|.+.|+++.+. .|+ +...+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~------------------------------------~~~~~~~ 47 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKS---DPK------------------------------------NELAWLV 47 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT------------------------------------CHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh---Ccc------------------------------------chHHHHH
Confidence 4456666677777777777777777776621 222 2345556
Q ss_pred HHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHhC-CChhhHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 048364 191 LVDMYAKCGFLKYALMVFELMEE---RNVISWTALICGSAHR-GYSEDALSLFEMMQATGVKPN-EMTFTGVLTACVHTG 265 (400)
Q Consensus 191 l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~ 265 (400)
+..+|...|++++|.+.++++.+ .+...+..+...+... |++++|...++++.+.+..|+ ...+..+..++...|
T Consensus 48 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 127 (225)
T 2vq2_A 48 RAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQG 127 (225)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcC
Confidence 66777777888888888777654 3456677788888888 999999999988887333343 567788888889999
Q ss_pred ChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCC--ccHHHHHHHHHHHHhcCCHHHHHHHH
Q 048364 266 LVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLE--PNVIIWGSFLAACKEHKQFDMAERVI 342 (400)
Q Consensus 266 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~ 342 (400)
++++|...++.+.+. .+.+...+..+..++...|++++|...+++. ... .+...+..+...+...|+.+.+..++
T Consensus 128 ~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 205 (225)
T 2vq2_A 128 QFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYE 205 (225)
T ss_dssp CHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 999999999988853 2345777888899999999999999999987 333 45667777788888999999999999
Q ss_pred HHHHHcCCCCCCchHHH
Q 048364 343 KQALRMVKPENDGGVFT 359 (400)
Q Consensus 343 ~~~~~~~~~~~~~~~~~ 359 (400)
+.+.+.. | .++....
T Consensus 206 ~~~~~~~-p-~~~~~~~ 220 (225)
T 2vq2_A 206 AQLQANF-P-YSEELQT 220 (225)
T ss_dssp HHHHHHC-T-TCHHHHH
T ss_pred HHHHHhC-C-CCHHHHH
Confidence 9998887 6 5555443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=4.2e-14 Score=118.95 Aligned_cols=148 Identities=12% Similarity=-0.046 Sum_probs=103.7
Q ss_pred HhcccchhHHHHHHHHHHHHhCcc---cchhhhhHHHHHH-HhCCHHHHHHHHhhCCC---CChhhHHHHHHHHHcCCCh
Q 048364 25 SCTHFNNLTVIHHLHSHILKLGFI---SHVYVATSLLHEY-VVTSFGFARKLFDELPE---RNAVTWNTMIKGYSKSGNV 97 (400)
Q Consensus 25 ~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 97 (400)
.....|++++|.+.++.+.+.... .+..++..+...+ ..|++++|...|++..+ .+..+|..+...+...|++
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCH
Confidence 344568999999999999886421 2455677777777 88999999998888763 3567788888888888888
Q ss_pred HHHHHHHhhCC---CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhh
Q 048364 98 CEARDFFERMP---LRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHG 174 (400)
Q Consensus 98 ~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~ 174 (400)
++|++.|++.. +.+..+|..+..+|.+.|++++|.+.|+++.+ ..|+.......+..+...|+++. |...+.
T Consensus 94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~--A~~~~~ 168 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ---DDPNDPFRSLWLYLAEQKLDEKQ--AKEVLK 168 (275)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHCHHH--HHHHHH
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHhcCHHH--HHHHHH
Confidence 88888888765 33667888888888888888888888888872 24544433333333344444444 444443
Q ss_pred HHH
Q 048364 175 FIV 177 (400)
Q Consensus 175 ~~~ 177 (400)
...
T Consensus 169 ~~~ 171 (275)
T 1xnf_A 169 QHF 171 (275)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.3e-13 Score=119.41 Aligned_cols=290 Identities=10% Similarity=0.006 Sum_probs=157.9
Q ss_pred cccchhHHHHHHHHHHHHhC--c--ccchhhhhHHHHHH---HhCCHHHHH-----------HHHhhCCC-C-Chh----
Q 048364 27 THFNNLTVIHHLHSHILKLG--F--ISHVYVATSLLHEY---VVTSFGFAR-----------KLFDELPE-R-NAV---- 82 (400)
Q Consensus 27 ~~~g~~~~a~~~~~~~~~~~--~--~~~~~~~~~l~~~~---~~g~~~~a~-----------~~~~~~~~-~-~~~---- 82 (400)
.+.+++++|.++++++.+.- + .++...|-.++..- ..+.++.+. ..++.+.. + +..
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l~ 102 (383)
T 3ulq_A 23 IRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLE 102 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHHH
Confidence 46788999999988886652 2 22333333333321 223333333 44444321 1 111
Q ss_pred --hHHHHHHHHHcCCChHHHHHHHhhCCC-----C----ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHH
Q 048364 83 --TWNTMIKGYSKSGNVCEARDFFERMPL-----R----NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTI 151 (400)
Q Consensus 83 --~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~ 151 (400)
.+......+...|++++|++.|++... + ...+|..+...|...|++++|+..+++..+...-.++
T Consensus 103 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~---- 178 (383)
T 3ulq_A 103 YYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA---- 178 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST----
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc----
Confidence 111233445566666666666665432 1 1245566666666666666666666665411000000
Q ss_pred HHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC-----CC----cccHHHH
Q 048364 152 GAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE-----RN----VISWTAL 222 (400)
Q Consensus 152 ~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l 222 (400)
. ......+++.+..+|...|++++|...|++..+ ++ ..++..+
T Consensus 179 ------------~----------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 230 (383)
T 3ulq_A 179 ------------Y----------------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNI 230 (383)
T ss_dssp ------------T----------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ------------c----------------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 0 011234566777778888888888887776653 11 1356666
Q ss_pred HHHHHhCCChhhHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhc---CCCCChhhHHHHH
Q 048364 223 ICGSAHRGYSEDALSLFEMMQAT----GV-KPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEY---DLEPRIQHYGCMV 294 (400)
Q Consensus 223 ~~~~~~~~~~~~a~~~~~~m~~~----~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~l~ 294 (400)
...|...|++++|+..+++..+. +. +....++..+..++.+.|++++|...+++..+-. +.+.....+..+.
T Consensus 231 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~ 310 (383)
T 3ulq_A 231 GLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLK 310 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777777777777777766551 22 2234556666667777777777777776655321 1111122244555
Q ss_pred HHHHhcCC---hHHHHHHHHhccCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048364 295 DLFGKAGF---LEEAYEVIRTMRLEPN-VIIWGSFLAACKEHKQFDMAERVIKQALRM 348 (400)
Q Consensus 295 ~~~~~~g~---~~~a~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 348 (400)
..|...|+ +++|..++++.+..|+ ...+..+...|...|++++|...++++.+.
T Consensus 311 ~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 311 SLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 66666666 6666666666643332 234555666666666666666666666554
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.7e-14 Score=126.05 Aligned_cols=265 Identities=10% Similarity=-0.012 Sum_probs=181.5
Q ss_pred hhhhHHHHHH-HhCCHHHHHHHHhhCCC--C-Ch----hhHHHHHHHHHcCCChHHHHHHHhhCCC---------CChhh
Q 048364 52 YVATSLLHEY-VVTSFGFARKLFDELPE--R-NA----VTWNTMIKGYSKSGNVCEARDFFERMPL---------RNVAS 114 (400)
Q Consensus 52 ~~~~~l~~~~-~~g~~~~a~~~~~~~~~--~-~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~~~~ 114 (400)
..+..+...+ ..|++++|...|++..+ | +. ..|..+...+...|++++|++.|++... ....+
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3444555566 99999999999998874 3 22 4688889999999999999999988652 13457
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHH
Q 048364 115 WSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDM 194 (400)
Q Consensus 115 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 194 (400)
+..+...|...|++++|...+++..+...-..+. .....++..+...
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------------------------------~~~~~~~~~l~~~ 175 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDR---------------------------------LSEGRALYNLGNV 175 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH---------------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhch---------------------------------HHHHHHHHHHHHH
Confidence 8888899999999999999999987211000000 0122344445555
Q ss_pred HHhcCC-----------------HHHHHHHHHhccC-----C----CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCC
Q 048364 195 YAKCGF-----------------LKYALMVFELMEE-----R----NVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248 (400)
Q Consensus 195 ~~~~g~-----------------~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 248 (400)
|...|+ +++|.+.+++..+ . ....+..+...|...|++++|...+++..+....
T Consensus 176 ~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 255 (411)
T 4a1s_A 176 YHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE 255 (411)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 555555 5555555554432 1 1235666677777778888887777776543110
Q ss_pred -CC----HHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCC----ChhhHHHHHHHHHhcCChHHHHHHHHhc-cC---
Q 048364 249 -PN----EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP----RIQHYGCMVDLFGKAGFLEEAYEVIRTM-RL--- 315 (400)
Q Consensus 249 -p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~--- 315 (400)
++ ...+..+...+...|++++|...+++......-.. ...++..+...|...|++++|.+.+++. .+
T Consensus 256 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 256 FGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 11 23667777788888888888888877664211111 1456777888888999999998888877 11
Q ss_pred ---Cc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 316 ---EP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 316 ---~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
.+ ...++..+...|...|++++|...++++.+..
T Consensus 336 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 336 LGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 11 23467788888999999999999999998876
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.57 E-value=3.1e-13 Score=106.33 Aligned_cols=163 Identities=11% Similarity=0.036 Sum_probs=108.4
Q ss_pred cccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHH
Q 048364 216 VISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295 (400)
Q Consensus 216 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 295 (400)
...|..+...|...|++++|+..|++..+.. +-+...+..+..++.+.|++++|...++..... .+.+...+..+..
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS 81 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence 3456666666666666666666666666542 124556666666677777777777777766642 2334455666666
Q ss_pred HHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHH
Q 048364 296 LFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEG 373 (400)
Q Consensus 296 ~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 373 (400)
.+...++++.|.+.+.+. ...| +...+..+..++.+.|++++|+..++++++.. | .++.++..++.+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p-~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-P-GFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-c-hhhhHHHHHHHHHHHCCCHHH
Confidence 677777777777777766 3333 45566667777777777777777777777777 6 677777777777777777777
Q ss_pred HHHHHHHHhc
Q 048364 374 AERVRKLMLN 383 (400)
Q Consensus 374 a~~~~~~m~~ 383 (400)
|.+.+++..+
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777777665
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.55 E-value=6.4e-14 Score=127.25 Aligned_cols=193 Identities=10% Similarity=-0.030 Sum_probs=164.8
Q ss_pred chHHHHHHHHHHHHhcCCH-HHHHHHHHhccC--C-CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHH
Q 048364 183 LNEQIATILVDMYAKCGFL-KYALMVFELMEE--R-NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVL 258 (400)
Q Consensus 183 ~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 258 (400)
.+...+..+..+|...|++ ++|.+.|++..+ | +...|..+...|...|++++|...|++..+. .|+...+..+.
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg 177 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLS 177 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHH
Confidence 3566777788888888898 999999888765 3 4668888899999999999999999998876 46778888888
Q ss_pred HHHHhc---------CChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhc--------CChHHHHHHHHhc-cCCc---
Q 048364 259 TACVHT---------GLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA--------GFLEEAYEVIRTM-RLEP--- 317 (400)
Q Consensus 259 ~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~a~~~~~~~-~~~p--- 317 (400)
.++... |++++|...++++.+. .+.+...|..+..+|... |++++|.+.|++. .+.|
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 255 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcc
Confidence 889888 9999999999999853 234677888999999988 9999999999998 5556
Q ss_pred -cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHH
Q 048364 318 -NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLM 381 (400)
Q Consensus 318 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 381 (400)
+...|..+..+|...|++++|...|+++.+.. | .+..++..+..++...|++++|.+.+.++
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p-~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALD-P-AWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-TCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 67789999999999999999999999999999 8 78889999999999999999998765544
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.54 E-value=8.5e-13 Score=114.10 Aligned_cols=274 Identities=11% Similarity=-0.015 Sum_probs=141.2
Q ss_pred hHHHHHHHhcccchhHHHHHHHHHHHHhCcccc---hhhhhHHHHHH-HhCCHHHHHHHHhhCCCC---------ChhhH
Q 048364 18 SILHILKSCTHFNNLTVIHHLHSHILKLGFISH---VYVATSLLHEY-VVTSFGFARKLFDELPER---------NAVTW 84 (400)
Q Consensus 18 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~---------~~~~~ 84 (400)
.+......+...|++++|...++++.+..+... ...+..+...+ ..|++++|...+++..+. ...++
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 344455666777888888888888877643311 24555566666 777777777776654320 12334
Q ss_pred HHHHHHHHcCCChHHHHHHHhhCCC-----CC----hhhHHHHHHHHHhcCC-------------cchHHHHHHHHHhcC
Q 048364 85 NTMIKGYSKSGNVCEARDFFERMPL-----RN----VASWSAMIAAYLNAGA-------------YDPGLKLFREMISNE 142 (400)
Q Consensus 85 ~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~-------------~~~a~~~~~~m~~~~ 142 (400)
..+...+...|++++|.+.|++... ++ ..++..+...+...|+ .+++.+.
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-------- 158 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA-------- 158 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH--------
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH--------
Confidence 4444555555555555555444320 11 1234444444444444 1111111
Q ss_pred CCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhc----c-ccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCcc
Q 048364 143 GLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN----E-WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVI 217 (400)
Q Consensus 143 ~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 217 (400)
++. +...+....+. + ......++..+...|...|++++|...+++..+
T Consensus 159 ---------------------~~~--A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~---- 211 (338)
T 3ro2_A 159 ---------------------LQA--AVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL---- 211 (338)
T ss_dssp ---------------------HHH--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----
T ss_pred ---------------------HHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH----
Confidence 232 22222222111 0 011223444555555556666666555544332
Q ss_pred cHHHHHHHHHhCCChhhHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCC----hhhHHH
Q 048364 218 SWTALICGSAHRGYSEDALSLFEMMQATGV-KPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR----IQHYGC 292 (400)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ 292 (400)
+... .+. .....++..+...+...|++++|...++...+...-.++ ..++..
T Consensus 212 --------------------~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 268 (338)
T 3ro2_A 212 --------------------IAKE---FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYS 268 (338)
T ss_dssp --------------------HHHH---HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --------------------HHHh---cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 0000 000 001224555555666666666666666655432111111 445666
Q ss_pred HHHHHHhcCChHHHHHHHHhc-cC------Cc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 293 MVDLFGKAGFLEEAYEVIRTM-RL------EP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 293 l~~~~~~~g~~~~a~~~~~~~-~~------~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
+...|...|++++|...+++. .. .+ ...++..+...|...|++++|...++++.+..
T Consensus 269 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 269 LGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 777777778877777777766 11 11 13466777888888888888888888887765
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.54 E-value=3e-13 Score=119.66 Aligned_cols=197 Identities=10% Similarity=0.007 Sum_probs=151.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhccC-----CC-----cccHHHHHHHHHhCCChhhHHHHHHHHHHCCCC-CC---
Q 048364 185 EQIATILVDMYAKCGFLKYALMVFELMEE-----RN-----VISWTALICGSAHRGYSEDALSLFEMMQATGVK-PN--- 250 (400)
Q Consensus 185 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~--- 250 (400)
..++..+..+|...|+++.|...+++..+ ++ ..+++.+...|...|++++|...+++..+.... ++
T Consensus 143 a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 222 (383)
T 3ulq_A 143 AEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQL 222 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHH
Confidence 45677788888888999888888877764 11 246888889999999999999999988753111 11
Q ss_pred -HHHHHHHHHHHHhcCChhhHHHHHHHhhhh---cCC-CCChhhHHHHHHHHHhcCChHHHHHHHHhc-cC-----Cc-c
Q 048364 251 -EMTFTGVLTACVHTGLVDEGRKYFKMIDEE---YDL-EPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RL-----EP-N 318 (400)
Q Consensus 251 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~-----~p-~ 318 (400)
..++..+..++...|++++|...+++..+- .+. +....++..+..+|.+.|++++|.+.+++. .+ .| .
T Consensus 223 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 302 (383)
T 3ulq_A 223 MGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIY 302 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 247888999999999999999999988741 122 234567889999999999999999999987 11 22 2
Q ss_pred HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhcc
Q 048364 319 VIIWGSFLAACKEHKQ---FDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 319 ~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
...+..+...+...|+ +++|..++++. +..+....++..++..|...|++++|...+++..+.
T Consensus 303 ~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 303 LSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 2346778888888998 77888887776 212145678889999999999999999999998763
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.53 E-value=8.9e-13 Score=103.72 Aligned_cols=164 Identities=14% Similarity=0.046 Sum_probs=142.5
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048364 184 NEQIATILVDMYAKCGFLKYALMVFELMEE--R-NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTA 260 (400)
Q Consensus 184 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 260 (400)
++.+|..+..+|...|++++|.+.|++..+ | +..++..+..+|.+.|++++|...+.+..... +-+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 567889999999999999999999999876 3 56678889999999999999999999988764 3356777778888
Q ss_pred HHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHH
Q 048364 261 CVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMA 338 (400)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a 338 (400)
+...++++.+...++...+. .+.+...+..+..+|.+.|++++|++.|++. ...| +..+|..+..+|.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 99999999999999998853 3446778889999999999999999999998 5555 567899999999999999999
Q ss_pred HHHHHHHHHcCCC
Q 048364 339 ERVIKQALRMVKP 351 (400)
Q Consensus 339 ~~~~~~~~~~~~~ 351 (400)
...|+++++.. |
T Consensus 161 ~~~~~~al~~~-p 172 (184)
T 3vtx_A 161 VKYFKKALEKE-E 172 (184)
T ss_dssp HHHHHHHHHTT-H
T ss_pred HHHHHHHHhCC-c
Confidence 99999999988 6
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.50 E-value=2.2e-11 Score=104.17 Aligned_cols=163 Identities=9% Similarity=0.037 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhccC--CC-cc-cHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048364 185 EQIATILVDMYAKCGFLKYALMVFELMEE--RN-VI-SWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTA 260 (400)
Q Consensus 185 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 260 (400)
...|..++..+.+.|++++|..+|++..+ |+ .. .|..++..+.+.|++++|..+|++..+.. +++...|......
T Consensus 99 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~ 177 (308)
T 2ond_A 99 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALM 177 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 34555666667777777888888877765 32 33 67777778888888888888888887753 2234444433332
Q ss_pred HH-hcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-c---CCcc--HHHHHHHHHHHHhcC
Q 048364 261 CV-HTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-R---LEPN--VIIWGSFLAACKEHK 333 (400)
Q Consensus 261 ~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~---~~p~--~~~~~~l~~~~~~~~ 333 (400)
.. ..|+.++|..+|+...+.. +.+...|..++..+.+.|++++|..+|++. . +.|+ ...|..++....+.|
T Consensus 178 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g 255 (308)
T 2ond_A 178 EYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 255 (308)
T ss_dssp HHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence 22 2688999999999888542 346678888888888999999999999888 3 3553 567888888888899
Q ss_pred CHHHHHHHHHHHHHcCCC
Q 048364 334 QFDMAERVIKQALRMVKP 351 (400)
Q Consensus 334 ~~~~a~~~~~~~~~~~~~ 351 (400)
+.+.|..+++++.+.. |
T Consensus 256 ~~~~a~~~~~~a~~~~-p 272 (308)
T 2ond_A 256 DLASILKVEKRRFTAF-R 272 (308)
T ss_dssp CHHHHHHHHHHHHHHT-T
T ss_pred CHHHHHHHHHHHHHHc-c
Confidence 9999999999999888 6
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-13 Score=118.14 Aligned_cols=238 Identities=13% Similarity=0.134 Sum_probs=113.4
Q ss_pred ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcC------CCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhcc----
Q 048364 111 NVASWSAMIAAYLNAGAYDPGLKLFREMISNE------GLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE---- 180 (400)
Q Consensus 111 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~------~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~---- 180 (400)
+..++..+...+...|++++|..+++++.+.. .......++..+...+...|+++. |...+..+.+..
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~--A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKD--AANLLNDALAIREKTL 103 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHH--HHHHHHHHHHHHHHHh
Confidence 34577778888888888888888888887210 011112234444444444444444 444444333321
Q ss_pred ---ccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHC------CCCC-C
Q 048364 181 ---WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQAT------GVKP-N 250 (400)
Q Consensus 181 ---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~~p-~ 250 (400)
.+.... .+..+...|...|++++|...+++..+. +..| .
T Consensus 104 ~~~~~~~~~-------------------------------~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 152 (311)
T 3nf1_A 104 GKDHPAVAA-------------------------------TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDV 152 (311)
T ss_dssp CTTCHHHHH-------------------------------HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCCChHHHH-------------------------------HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence 111223 3444455555555555555555554432 1111 2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhhhc-----CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhc-cC--------
Q 048364 251 EMTFTGVLTACVHTGLVDEGRKYFKMIDEEY-----DLEP-RIQHYGCMVDLFGKAGFLEEAYEVIRTM-RL-------- 315 (400)
Q Consensus 251 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~-------- 315 (400)
...+..+...+...|++++|..+++.+.+.. +..| ...++..+..+|...|++++|.+.++++ ..
T Consensus 153 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 232 (311)
T 3nf1_A 153 AKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGS 232 (311)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 2344555555556666666666655554310 0011 2334555556666666666666666554 11
Q ss_pred -Cc-------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 316 -EP-------NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 316 -~p-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
.| ....+..+...+...+.+.++...++...... | ....++..++.+|...|++++|.+.+++..+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 233 VDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-P-TVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -----CCHHHHHHHHHHC-------CCSCCCC---------C-H-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-c-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 01 11112222233334445555555566555554 4 5566667777777777777777777766654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.48 E-value=2e-11 Score=107.79 Aligned_cols=127 Identities=10% Similarity=-0.006 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhhh---cCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-------cCCccHHHH
Q 048364 253 TFTGVLTACVHTGLVDEGRKYFKMIDEE---YDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-------RLEPNVIIW 322 (400)
Q Consensus 253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-------~~~p~~~~~ 322 (400)
++..+..++...|++++|...+++..+- .+.+....++..+...|.+.|++++|...+++. +.+.....+
T Consensus 224 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 303 (378)
T 3q15_A 224 SLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELF 303 (378)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3444444555555555555555444420 011112344444555555555555555555544 111112233
Q ss_pred HHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHh
Q 048364 323 GSFLAACKEHKQ---FDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLML 382 (400)
Q Consensus 323 ~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 382 (400)
..+...+...++ +.+|...+++. +..+.....+..++..|...|++++|...+++..
T Consensus 304 ~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 304 LFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444444444 44444444431 1110233344455555555555555555555544
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.47 E-value=2.7e-12 Score=100.73 Aligned_cols=129 Identities=19% Similarity=0.101 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cC-CccHHHHHHHHHH
Q 048364 251 EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RL-EPNVIIWGSFLAA 328 (400)
Q Consensus 251 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~-~p~~~~~~~l~~~ 328 (400)
...+..+...+...|++++|...++.+.+. .+.+...+..+...+...|++++|.+.++++ .. +.+...+..+...
T Consensus 42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 119 (186)
T 3as5_A 42 VDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVA 119 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHH
Confidence 334444444445555555555555554432 1223444555555555555566655555555 22 2244555666666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 329 CKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 329 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
+...|++++|...++++.+.. | .+..++..++.++...|++++|...+++..+
T Consensus 120 ~~~~~~~~~A~~~~~~~~~~~-~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 120 LDNLGRFDEAIDSFKIALGLR-P-NEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHHhcC-c-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666666766666666666 5 5566666666666667777777766666654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.3e-12 Score=121.80 Aligned_cols=162 Identities=12% Similarity=0.124 Sum_probs=110.4
Q ss_pred ccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHH
Q 048364 217 ISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDL 296 (400)
Q Consensus 217 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 296 (400)
.+|+.+...|.+.|++++|+..|++..+.. +-+..++..+..++.+.|++++|+..|++..+. -+.+...|..+..+
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 455666666666666666666666666542 113556666777777777777777777776632 12245667777777
Q ss_pred HHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHH
Q 048364 297 FGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGA 374 (400)
Q Consensus 297 ~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 374 (400)
|...|++++|++.|++. .+.| +...|+.+..+|...|++++|+..|+++++.. | .+..++..++.+|...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P-~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-P-DFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-S-CCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C-CChHHHhhhhhHHHhcccHHHH
Confidence 77777777777777776 4455 45567777777777777777777777777777 7 6777777777777777777777
Q ss_pred HHHHHHHhc
Q 048364 375 ERVRKLMLN 383 (400)
Q Consensus 375 ~~~~~~m~~ 383 (400)
.+.+++..+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-11 Score=109.36 Aligned_cols=304 Identities=10% Similarity=0.042 Sum_probs=183.2
Q ss_pred CCCCchhHHHHHHHh--cccchhHHHHHHHHHHHHhC--cc--cchhhhhHHHHHH---HhCCHHHHH---------HHH
Q 048364 12 VPSDSFSILHILKSC--THFNNLTVIHHLHSHILKLG--FI--SHVYVATSLLHEY---VVTSFGFAR---------KLF 73 (400)
Q Consensus 12 ~~p~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~--~~--~~~~~~~~l~~~~---~~g~~~~a~---------~~~ 73 (400)
+.|+...-..|-..+ .+.+++++|.++++++.+.. +. .+...|-.++..- ..+.++.+. ..+
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 345555555566665 67788888888888876642 21 2233333333321 222222222 333
Q ss_pred hhCCC---CCh-----hhHHHHHHHHHcCCChHHHHHHHhhCCC-----C----ChhhHHHHHHHHHhcCCcchHHHHHH
Q 048364 74 DELPE---RNA-----VTWNTMIKGYSKSGNVCEARDFFERMPL-----R----NVASWSAMIAAYLNAGAYDPGLKLFR 136 (400)
Q Consensus 74 ~~~~~---~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~----~~~~~~~l~~~~~~~g~~~~a~~~~~ 136 (400)
+.+.. +.. ..+......+...|++++|+..|++... + ...++..+..+|...|+++.|...++
T Consensus 86 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~ 165 (378)
T 3q15_A 86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL 165 (378)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 33221 100 0112223334455666666666555431 1 12345555555566666666665555
Q ss_pred HHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhcccc-chHHHHHHHHHHHHhcCCHHHHHHHHHhccC--
Q 048364 137 EMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE-LNEQIATILVDMYAKCGFLKYALMVFELMEE-- 213 (400)
Q Consensus 137 ~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 213 (400)
+......-.++ .. ....+++.+..+|...|++++|...|++..+
T Consensus 166 ~al~~~~~~~~---------------------------------~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~ 212 (378)
T 3q15_A 166 QALDIYQNHPL---------------------------------YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELA 212 (378)
T ss_dssp HHHHHHHTSTT---------------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCC---------------------------------chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 54411000000 01 1245667777888888888888888776654
Q ss_pred ---CC----cccHHHHHHHHHhCCChhhHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhc
Q 048364 214 ---RN----VISWTALICGSAHRGYSEDALSLFEMMQA-----TGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEY 281 (400)
Q Consensus 214 ---~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 281 (400)
++ ..+++.+...|...|++++|+..+++... .. +....++..+..++.+.|++++|...+++..+-.
T Consensus 213 ~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 291 (378)
T 3q15_A 213 MDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHI 291 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 11 24577788888888999999888888776 32 2236778888889999999999999999887543
Q ss_pred CCCC---ChhhHHHHHHHHHhcCC---hHHHHHHHHhccCCccH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 282 DLEP---RIQHYGCMVDLFGKAGF---LEEAYEVIRTMRLEPNV-IIWGSFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 282 ~~~~---~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
.-.+ ....+..+...|...++ +.+|...+++.+..|+. ..+..+...|...|++++|...++++.+..
T Consensus 292 ~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 292 TARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp CTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 2212 23445666677778888 88899999887544433 466788889999999999999999887643
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.3e-10 Score=102.36 Aligned_cols=52 Identities=15% Similarity=0.032 Sum_probs=28.3
Q ss_pred HHHHHcCCChHHHHHHHhhCC---C-CCh----hhHHHHHHHHHhcCCcchHHHHHHHHH
Q 048364 88 IKGYSKSGNVCEARDFFERMP---L-RNV----ASWSAMIAAYLNAGAYDPGLKLFREMI 139 (400)
Q Consensus 88 ~~~~~~~~~~~~a~~~~~~~~---~-~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~ 139 (400)
...+...|++++|...+++.. + .+. .+++.+...+...|++++|.+.+++..
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 80 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTE 80 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 334455666666666655532 1 111 134445555666666666666666665
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=6.3e-13 Score=113.76 Aligned_cols=237 Identities=11% Similarity=0.057 Sum_probs=142.2
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHHhhCCC--------C---ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcC-----C
Q 048364 80 NAVTWNTMIKGYSKSGNVCEARDFFERMPL--------R---NVASWSAMIAAYLNAGAYDPGLKLFREMISNE-----G 143 (400)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-----~ 143 (400)
+..++..+...+...|++++|..+|+++.. . ...++..+...|...|++++|...+++..... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 456788899999999999999999988753 2 34578889999999999999999999998331 1
Q ss_pred CCC-CHHHHHHHHHHhhcccchhhhhhhhhhhHHHhcc------c-cchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCC
Q 048364 144 LTP-DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE------W-ELNEQIATILVDMYAKCGFLKYALMVFELMEERN 215 (400)
Q Consensus 144 ~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~------~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 215 (400)
-.| ...++..+...+...|+++. |...+..+.+.. . .....++.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~--A~~~~~~a~~~~~~~~~~~~~~~~~~~~-------------------------- 157 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKE--AEPLCKRALEIREKVLGKDHPDVAKQLN-------------------------- 157 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHH--HHHHHHHHHHHHHHHHCTTCHHHHHHHH--------------------------
T ss_pred CChHHHHHHHHHHHHHHHcCcHHH--HHHHHHHHHHHHHHhcCCCChHHHHHHH--------------------------
Confidence 122 34466677777777777777 666666655431 1 11223334
Q ss_pred cccHHHHHHHHHhCCChhhHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHhhhhc------C
Q 048364 216 VISWTALICGSAHRGYSEDALSLFEMMQAT------GVKP-NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEY------D 282 (400)
Q Consensus 216 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~ 282 (400)
.+...+...|++++|...++++... +..| ...++..+..++...|++++|...++++.+.. .
T Consensus 158 -----~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 232 (311)
T 3nf1_A 158 -----NLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGS 232 (311)
T ss_dssp -----HHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred -----HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 4444455555555555555544432 1122 22455666666677777777777776665310 1
Q ss_pred CCCCh-hh------HHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 283 LEPRI-QH------YGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 283 ~~~~~-~~------~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
..+.. .. +..+...+...+.+.++...++.. ...| +..++..+..+|.+.|++++|...++++++..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 233 VDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp -----CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 11111 11 222222333445555566666666 2334 45678889999999999999999999988765
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.42 E-value=4.4e-11 Score=102.31 Aligned_cols=197 Identities=12% Similarity=0.071 Sum_probs=153.6
Q ss_pred hHHHHHHHHHHHH-------hcCCH-------HHHHHHHHhccC---C-CcccHHHHHHHHHhCCChhhHHHHHHHHHHC
Q 048364 184 NEQIATILVDMYA-------KCGFL-------KYALMVFELMEE---R-NVISWTALICGSAHRGYSEDALSLFEMMQAT 245 (400)
Q Consensus 184 ~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 245 (400)
++..|..++..+. +.|++ ++|..+|++..+ | +...|..++..+.+.|++++|..+|++..+.
T Consensus 49 ~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 128 (308)
T 2ond_A 49 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI 128 (308)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Confidence 3444555554443 35775 899999998875 3 3457889999999999999999999999985
Q ss_pred CCCCC-HH-HHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHH-hcCChHHHHHHHHhc-cCCc-cHH
Q 048364 246 GVKPN-EM-TFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG-KAGFLEEAYEVIRTM-RLEP-NVI 320 (400)
Q Consensus 246 ~~~p~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~-~~~p-~~~ 320 (400)
.|+ .. .|..+...+.+.|++++|..+|++..+. .+++...|...+.... ..|++++|.++|++. ...| +..
T Consensus 129 --~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 204 (308)
T 2ond_A 129 --EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPE 204 (308)
T ss_dssp --SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred --cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence 454 33 7888999999999999999999999842 2334555544433322 379999999999988 3334 567
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-C-CCCCchHHHHHHHHhhcccchHHHHHHHHHHhcc
Q 048364 321 IWGSFLAACKEHKQFDMAERVIKQALRMV-K-PENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 321 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
.|..++..+.+.|++++|..+|++++... . |......|..++..+.+.|+.++|..+++++.+.
T Consensus 205 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 205 YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88999999999999999999999999963 1 3225678888899999999999999999998764
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.41 E-value=2.4e-11 Score=95.22 Aligned_cols=163 Identities=15% Similarity=0.038 Sum_probs=140.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhccCC---CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048364 185 EQIATILVDMYAKCGFLKYALMVFELMEER---NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTAC 261 (400)
Q Consensus 185 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 261 (400)
...+..+...+...|++++|...++++.+. +...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 456677888899999999999999998862 45678888899999999999999999998763 34677888899999
Q ss_pred HhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHH
Q 048364 262 VHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAE 339 (400)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~ 339 (400)
...|++++|.+.++.+.+. .+.+...+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999853 3456778889999999999999999999998 3334 5678899999999999999999
Q ss_pred HHHHHHHHcCCC
Q 048364 340 RVIKQALRMVKP 351 (400)
Q Consensus 340 ~~~~~~~~~~~~ 351 (400)
..++++.+.. |
T Consensus 165 ~~~~~~~~~~-~ 175 (186)
T 3as5_A 165 PHFKKANELD-E 175 (186)
T ss_dssp HHHHHHHHHH-H
T ss_pred HHHHHHHHcC-C
Confidence 9999999887 6
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.6e-11 Score=97.99 Aligned_cols=143 Identities=10% Similarity=-0.072 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhccC----CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048364 186 QIATILVDMYAKCGFLKYALMVFELMEE----RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTAC 261 (400)
Q Consensus 186 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 261 (400)
..+......+...|++++|...|++..+ ++...+..+..++...|++++|+..+++..+... -+...+..+..++
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~ 86 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKSAAY 86 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHHHHH
Confidence 3444445555555555555555554432 2333344445555555555555555555554321 1234445555555
Q ss_pred HhcCChhhHHHHHHHhhhhcCCCCCh-------hhHHHHHHHHHhcCChHHHHHHHHhc-cCCcc---HHHHHHHHHHHH
Q 048364 262 VHTGLVDEGRKYFKMIDEEYDLEPRI-------QHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPN---VIIWGSFLAACK 330 (400)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~---~~~~~~l~~~~~ 330 (400)
...|++++|...+++..+.. +.+. ..|..+...+...|++++|.+.|++. ...|+ ...+..+..+|.
T Consensus 87 ~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 87 RDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 55555555555555555321 1122 23444555555555555555555555 44443 234444444444
Q ss_pred h
Q 048364 331 E 331 (400)
Q Consensus 331 ~ 331 (400)
.
T Consensus 165 ~ 165 (228)
T 4i17_A 165 N 165 (228)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.39 E-value=8.4e-12 Score=113.34 Aligned_cols=188 Identities=11% Similarity=-0.086 Sum_probs=128.4
Q ss_pred HHHHHHHHhhcccch-hhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC--CCcccHHHHHHHH
Q 048364 150 TIGAVLSGCSHLGSV-GLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE--RNVISWTALICGS 226 (400)
Q Consensus 150 ~~~~ll~~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~ 226 (400)
.+..+..++...|++ ++ |...++.+.+.. +.+...+..+..+|...|++++|.+.|++..+ |+...+..+...+
T Consensus 104 ~~~~lg~~~~~~g~~~~~--A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~ 180 (474)
T 4abn_A 104 ALMLKGKALNVTPDYSPE--AEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVL 180 (474)
T ss_dssp HHHHHHHHHTSSSSCCHH--HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccHHH--HHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 333344444444444 44 444444443332 11345666777777777888888888877765 5556667777777
Q ss_pred HhC---------CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CChhhHHHHHHHhhhhcCCC---CC
Q 048364 227 AHR---------GYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHT--------GLVDEGRKYFKMIDEEYDLE---PR 286 (400)
Q Consensus 227 ~~~---------~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~---~~ 286 (400)
... |++++|+..|++..+.. +-+...+..+..++... |++++|...|++..+. .+ .+
T Consensus 181 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~ 257 (474)
T 4abn_A 181 RQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--DRKASSN 257 (474)
T ss_dssp TTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--CGGGGGC
T ss_pred HHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--CCCcccC
Confidence 777 88888888888887763 22567777888888877 8888888888888753 12 36
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048364 287 IQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIK 343 (400)
Q Consensus 287 ~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~ 343 (400)
...|..+..+|...|++++|.+.|++. ...| +...+..+..++...|++++|...+.
T Consensus 258 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 258 PDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 677888888888888888888888887 4445 45567777788888888888776543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.4e-10 Score=102.00 Aligned_cols=260 Identities=12% Similarity=-0.006 Sum_probs=165.4
Q ss_pred HHHH-HhCCHHHHHHHHhhCCC----CCh----hhHHHHHHHHHcCCChHHHHHHHhhCCC-----CCh----hhHHHHH
Q 048364 58 LHEY-VVTSFGFARKLFDELPE----RNA----VTWNTMIKGYSKSGNVCEARDFFERMPL-----RNV----ASWSAMI 119 (400)
Q Consensus 58 ~~~~-~~g~~~~a~~~~~~~~~----~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~----~~~~~l~ 119 (400)
...+ ..|++++|...+++... .+. .+++.+...+...|++++|.+.+++... .+. .++..+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3344 88999999999877542 222 2456677788889999999999988652 222 2356677
Q ss_pred HHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcC
Q 048364 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCG 199 (400)
Q Consensus 120 ~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 199 (400)
..+...|++++|.+.+++......- .+... .+.....+..+...+...|
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~----------------~~~~~---------------~~~~~~~~~~la~~~~~~g 149 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINE----------------QHLEQ---------------LPMHEFLVRIRAQLLWAWA 149 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH----------------TTCTT---------------STHHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHH----------------hcccc---------------CcHHHHHHHHHHHHHHHhc
Confidence 8888999999999999888721100 00000 0012234455666677777
Q ss_pred CHHHHHHHHHhccC--C------CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC--HHHHH----HHHHHHHhcC
Q 048364 200 FLKYALMVFELMEE--R------NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPN--EMTFT----GVLTACVHTG 265 (400)
Q Consensus 200 ~~~~A~~~~~~~~~--~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~----~l~~~~~~~~ 265 (400)
++++|...+++..+ + ...++..+...+...|++++|...+++.......++ ..... ..+..+...|
T Consensus 150 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 229 (373)
T 1hz4_A 150 RLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTG 229 (373)
T ss_dssp CHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCC
Confidence 77777777766543 1 113456666777788888888888877754311111 11111 2233466788
Q ss_pred ChhhHHHHHHHhhhhcCCCCC---hhhHHHHHHHHHhcCChHHHHHHHHhc-------cCCccH-HHHHHHHHHHHhcCC
Q 048364 266 LVDEGRKYFKMIDEEYDLEPR---IQHYGCMVDLFGKAGFLEEAYEVIRTM-------RLEPNV-IIWGSFLAACKEHKQ 334 (400)
Q Consensus 266 ~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~-------~~~p~~-~~~~~l~~~~~~~~~ 334 (400)
++++|...++..... ...+. ...+..+...+...|++++|...+++. +..++. ..+..+..++...|+
T Consensus 230 ~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 308 (373)
T 1hz4_A 230 DKAAAANWLRHTAKP-EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGR 308 (373)
T ss_dssp CHHHHHHHHHHSCCC-CCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHhCCCC-CCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCC
Confidence 888888888877632 11111 123566777888888888888888776 111222 256666777888888
Q ss_pred HHHHHHHHHHHHHcC
Q 048364 335 FDMAERVIKQALRMV 349 (400)
Q Consensus 335 ~~~a~~~~~~~~~~~ 349 (400)
.++|...+++.....
T Consensus 309 ~~~A~~~l~~al~~~ 323 (373)
T 1hz4_A 309 KSDAQRVLLDALKLA 323 (373)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 888888888887654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.38 E-value=2.1e-09 Score=100.56 Aligned_cols=134 Identities=10% Similarity=0.119 Sum_probs=96.3
Q ss_pred hHHHHhCCCCCCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCC---HHHHHHHHhhCCC-
Q 048364 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTS---FGFARKLFDELPE- 78 (400)
Q Consensus 4 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~---~~~a~~~~~~~~~- 78 (400)
|+.-...+ +-|..+|..++..+.+.+.++.+..+|+.++..- +.+...|...+..- +.|. ++.+..+|++...
T Consensus 55 lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~ 132 (679)
T 4e6h_A 55 LNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSK 132 (679)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCS
T ss_pred HHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHh
Confidence 34444444 5689999999999999999999999999999863 33566788888887 8888 9999999999874
Q ss_pred ----CChhhHHHHHHHHHcCCCh--------HHHHHHHhhCC------CC-ChhhHHHHHHHHH---------hcCCcch
Q 048364 79 ----RNAVTWNTMIKGYSKSGNV--------CEARDFFERMP------LR-NVASWSAMIAAYL---------NAGAYDP 130 (400)
Q Consensus 79 ----~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~------~~-~~~~~~~l~~~~~---------~~g~~~~ 130 (400)
|++..|...+....+.++. +.+.++|++.. .+ +...|...+.... ..++++.
T Consensus 133 ~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~ 212 (679)
T 4e6h_A 133 ELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQY 212 (679)
T ss_dssp SSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHH
Confidence 6777888888776665543 33446776532 23 3457777665433 2345778
Q ss_pred HHHHHHHHH
Q 048364 131 GLKLFREMI 139 (400)
Q Consensus 131 a~~~~~~m~ 139 (400)
+..+|+..+
T Consensus 213 ~R~iy~raL 221 (679)
T 4e6h_A 213 IRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 889999887
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.7e-11 Score=98.70 Aligned_cols=166 Identities=10% Similarity=-0.024 Sum_probs=142.6
Q ss_pred CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHH
Q 048364 215 NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMV 294 (400)
Q Consensus 215 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 294 (400)
|+..+......+...|++++|+..|++..+....++...+..+..++...|++++|...+++..+ ..+.+...+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 45677888889999999999999999999875446777888899999999999999999999985 2233567889999
Q ss_pred HHHHhcCChHHHHHHHHhc-cCCcc-H-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--CchHHHHHHH
Q 048364 295 DLFGKAGFLEEAYEVIRTM-RLEPN-V-------IIWGSFLAACKEHKQFDMAERVIKQALRMVKPEN--DGGVFTLICD 363 (400)
Q Consensus 295 ~~~~~~g~~~~a~~~~~~~-~~~p~-~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~ 363 (400)
.+|...|++++|.+.+++. ...|+ . ..|..+...+...|++++|+..++++++.. | . +..++..++.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p-~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-S-KKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-C-HHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-C-CcccHHHHHHHHH
Confidence 9999999999999999998 44453 3 457888888999999999999999999998 8 7 7889999999
Q ss_pred Hhhcccch---------------------------HHHHHHHHHHhcc
Q 048364 364 LYTMNEKW---------------------------EGAERVRKLMLNQ 384 (400)
Q Consensus 364 ~~~~~g~~---------------------------~~a~~~~~~m~~~ 384 (400)
+|...|+. ++|...+++..+.
T Consensus 162 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 162 LFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99988888 8898888888763
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=4.3e-11 Score=113.21 Aligned_cols=163 Identities=11% Similarity=0.085 Sum_probs=140.8
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048364 184 NEQIATILVDMYAKCGFLKYALMVFELMEE--R-NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTA 260 (400)
Q Consensus 184 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 260 (400)
+...++.|..+|.+.|++++|.+.|++..+ | +..+|+.+..+|.+.|++++|+..|++..+... -+...|..+..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nLg~~ 86 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 567889999999999999999999998876 3 467889999999999999999999999988632 256889999999
Q ss_pred HHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHH
Q 048364 261 CVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMA 338 (400)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a 338 (400)
+.+.|++++|++.|++..+- -+.+...|..+..+|...|++++|++.|++. .+.| +...+..+..++...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 99999999999999999853 2335788999999999999999999999998 6667 466889999999999999999
Q ss_pred HHHHHHHHHcC
Q 048364 339 ERVIKQALRMV 349 (400)
Q Consensus 339 ~~~~~~~~~~~ 349 (400)
.+.++++++..
T Consensus 165 ~~~~~kal~l~ 175 (723)
T 4gyw_A 165 DERMKKLVSIV 175 (723)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99998887643
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.33 E-value=4.3e-11 Score=100.64 Aligned_cols=221 Identities=15% Similarity=0.140 Sum_probs=145.3
Q ss_pred hcccchhhhhhhhhhhHHHhc-------cccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCC-----------CcccHH
Q 048364 159 SHLGSVGLLMGKSAHGFIVKN-------EWELNEQIATILVDMYAKCGFLKYALMVFELMEER-----------NVISWT 220 (400)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~ 220 (400)
...|+++. |...++...+. ..+....++..+..+|...|++++|...+++..+. ...++.
T Consensus 12 ~~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 89 (283)
T 3edt_B 12 SGLVPRGS--AVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLN 89 (283)
T ss_dssp -CCSCSSS--HHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred CCCCCHHH--HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 34566776 77777666552 22345677888888899999999999888876531 234677
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHhhhhc-----CCCC-Ch
Q 048364 221 ALICGSAHRGYSEDALSLFEMMQAT------GVKP-NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEY-----DLEP-RI 287 (400)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~-~~ 287 (400)
.+...|...|++++|...+++.... ...| ...++..+...+...|++++|..+++++.+.. +..| ..
T Consensus 90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 169 (283)
T 3edt_B 90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVA 169 (283)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 7888888899999999988887664 1112 34667778888888899999998888877430 1122 34
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhc-c---------CCcc-HHHHHHHHHHHHhcCC------HHHHHHHHHHHHHcCC
Q 048364 288 QHYGCMVDLFGKAGFLEEAYEVIRTM-R---------LEPN-VIIWGSFLAACKEHKQ------FDMAERVIKQALRMVK 350 (400)
Q Consensus 288 ~~~~~l~~~~~~~g~~~~a~~~~~~~-~---------~~p~-~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~~ 350 (400)
.++..+..+|...|++++|.+.+++. . ..+. ...+..+...+...+. +..+...++......
T Consensus 170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 248 (283)
T 3edt_B 170 KTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDS- 248 (283)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCC-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCC-
Confidence 56778888888889999888888876 1 1222 2233333333333222 222222222221121
Q ss_pred CCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 351 PENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 351 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
| ....++..++.+|...|++++|..++++..+
T Consensus 249 ~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 249 P-TVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp H-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred H-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 4566888999999999999999999998875
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.29 E-value=5.4e-11 Score=100.05 Aligned_cols=224 Identities=10% Similarity=0.007 Sum_probs=159.0
Q ss_pred HhcCCcchHHHHHHHHHhc------CCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhcc-------ccchHHHHH
Q 048364 123 LNAGAYDPGLKLFREMISN------EGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE-------WELNEQIAT 189 (400)
Q Consensus 123 ~~~g~~~~a~~~~~~m~~~------~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~ 189 (400)
...|++++|+.+|++..+. ...+....++..+...+...|+++. |...+..+.+.. .+....++.
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~ 89 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKE--AAHLLNDALAIREKTLGKDHPAVAATLN 89 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHH--HHHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 4567888888888777631 1112235578889999999999999 999999887652 233567889
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccC-------C----CcccHHHHHHHHHhCCChhhHHHHHHHHHHC------CCCC-CH
Q 048364 190 ILVDMYAKCGFLKYALMVFELMEE-------R----NVISWTALICGSAHRGYSEDALSLFEMMQAT------GVKP-NE 251 (400)
Q Consensus 190 ~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~ 251 (400)
.+..+|...|++++|...|++..+ + ...++..+...|...|++++|...+++..+. +..| ..
T Consensus 90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 169 (283)
T 3edt_B 90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVA 169 (283)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 999999999999999999988764 1 2356888899999999999999999998765 1133 34
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhhhc------CCCCC-hhhHHHHHHHHHhcC------ChHHHHHHHHhcc-CCc
Q 048364 252 MTFTGVLTACVHTGLVDEGRKYFKMIDEEY------DLEPR-IQHYGCMVDLFGKAG------FLEEAYEVIRTMR-LEP 317 (400)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~-~~~~~~l~~~~~~~g------~~~~a~~~~~~~~-~~p 317 (400)
.++..+..++...|++++|..+++++.+.. ...+. ...+..+...+...+ .+..+...++..+ ..|
T Consensus 170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (283)
T 3edt_B 170 KTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSP 249 (283)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCH
Confidence 678889999999999999999999887531 12232 333444444444333 2444455555552 334
Q ss_pred -cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048364 318 -NVIIWGSFLAACKEHKQFDMAERVIKQALRM 348 (400)
Q Consensus 318 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 348 (400)
...++..+...|...|++++|..+++++++.
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3457888999999999999999999998764
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.27 E-value=7.9e-10 Score=92.20 Aligned_cols=244 Identities=10% Similarity=0.012 Sum_probs=160.3
Q ss_pred HHHHHcCCChHHHHHHHhhCCCCChh-hHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhh
Q 048364 88 IKGYSKSGNVCEARDFFERMPLRNVA-SWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGL 166 (400)
Q Consensus 88 ~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 166 (400)
++-..-.|++..++.-...+...+.. .-.-+.++|...|+++... .-.|....+..+..-+ .. .
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~----------~~~~~~~a~~~la~~~-~~----~ 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQD----------PTSKLGKVLDLYVQFL-DT----K 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCC----------SSSTTHHHHHHHHHHH-TT----T
T ss_pred HHHHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCC----------CCCHHHHHHHHHHHHh-cc----c
Confidence 34455678999988877766543333 2333558888888887521 2234433433333333 21 2
Q ss_pred hhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCC-----CcccHHHHHHHHHhCCChhhHHHHHHH
Q 048364 167 LMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEER-----NVISWTALICGSAHRGYSEDALSLFEM 241 (400)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~ 241 (400)
+...++...+.+ .++...+..+..++...|++++|++++.+.... +...+...+..+.+.|+.+.|.+.+++
T Consensus 85 --a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 --NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp --CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 455555555544 344455567888888999999999999887543 344566778889999999999999999
Q ss_pred HHHCCCCC-----CHHHHHHHHHH--HHhcC--ChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHh
Q 048364 242 MQATGVKP-----NEMTFTGVLTA--CVHTG--LVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRT 312 (400)
Q Consensus 242 m~~~~~~p-----~~~~~~~l~~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 312 (400)
|.+. .| +..+...+..+ ....| +..+|..+|+++..+ .|+...-..+..++.+.|++++|.+.++.
T Consensus 162 ~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~ 236 (310)
T 3mv2_B 162 YTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVEL 236 (310)
T ss_dssp HHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8775 55 35556666655 33334 889999999998743 34422333344488889999999999886
Q ss_pred c-cC-----------CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHH
Q 048364 313 M-RL-----------EPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358 (400)
Q Consensus 313 ~-~~-----------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 358 (400)
+ .. +.|..+...+|......|+ +|.++++++.+.. | .++.+.
T Consensus 237 l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~-P-~hp~i~ 290 (310)
T 3mv2_B 237 LLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD-H-EHAFIK 290 (310)
T ss_dssp HHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT-C-CCHHHH
T ss_pred HHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC-C-CChHHH
Confidence 5 22 2356666566666666776 7889999999988 7 555443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.26 E-value=1.3e-08 Score=84.84 Aligned_cols=173 Identities=9% Similarity=0.008 Sum_probs=92.6
Q ss_pred HHHHHHhccC---CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChhhHHHHHHHhhh
Q 048364 204 ALMVFELMEE---RNVISWTALICGSAHRGYSEDALSLFEMMQATGVK-PNEMTFTGVLTACVHTGLVDEGRKYFKMIDE 279 (400)
Q Consensus 204 A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 279 (400)
|...|++..+ ++..++..+..++...|++++|++++.+....|.. -+...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4555555443 23333445556666666666666666665544321 2345555666666666666666666666653
Q ss_pred hcCCCC-----ChhhHHHHHHHH--HhcC--ChHHHHHHHHhc-cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-
Q 048364 280 EYDLEP-----RIQHYGCMVDLF--GKAG--FLEEAYEVIRTM-RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM- 348 (400)
Q Consensus 280 ~~~~~~-----~~~~~~~l~~~~--~~~g--~~~~a~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 348 (400)
. .| +..+...++.++ ...| ++.+|..+|+++ ...|+..+-..++.++.+.|++++|.+.++.+.+.
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 2 34 234444444442 2223 666666666666 33344222233333566666666666666655543
Q ss_pred ---------CCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 349 ---------VKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 349 ---------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
. | .++.++..++......|+ +|.++++++.+
T Consensus 242 p~~~~k~~~~-p-~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 242 YSVEQKENAV-L-YKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHTTTCHHHH-S-SHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred ccccccccCC-C-CCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 2 3 456666555555544554 55666666554
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=8.5e-10 Score=93.48 Aligned_cols=208 Identities=13% Similarity=0.077 Sum_probs=124.7
Q ss_pred CHHHHHHHHhhCCCCChhhHHHHHHHHHcCCChHHHHHHHhhCCC-------C--ChhhHHHHHHHHHhcCCcchHHHHH
Q 048364 65 SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPL-------R--NVASWSAMIAAYLNAGAYDPGLKLF 135 (400)
Q Consensus 65 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~--~~~~~~~l~~~~~~~g~~~~a~~~~ 135 (400)
++++|...|++. ...|...|++++|++.|++... + ...+|+.+..+|.+.|++++|+..|
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 467777766554 4556677777777777765431 1 1346777777777777777777777
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhc-CCHHHHHHHHHhccC-
Q 048364 136 REMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKC-GFLKYALMVFELMEE- 213 (400)
Q Consensus 136 ~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~- 213 (400)
++..+- +...|+... ...+++.+..+|... |++++|...|++..+
T Consensus 101 ~~Al~l----------------~~~~g~~~~-----------------~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~ 147 (292)
T 1qqe_A 101 ENAIQI----------------FTHRGQFRR-----------------GANFKFELGEILENDLHDYAKAIDCYELAGEW 147 (292)
T ss_dssp HHHHHH----------------HHHTTCHHH-----------------HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHH----------------HHHcCCHHH-----------------HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Confidence 776510 111122211 234566777778885 888888888877654
Q ss_pred -C---C----cccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCChhhHHHHHHHhhh
Q 048364 214 -R---N----VISWTALICGSAHRGYSEDALSLFEMMQATGVKPNE------MTFTGVLTACVHTGLVDEGRKYFKMIDE 279 (400)
Q Consensus 214 -~---~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 279 (400)
| + ..+++.+...+.+.|++++|+..|++..+....... ..+..+..++...|++++|...+++..+
T Consensus 148 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 148 YAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1 1 234666777777777888888777777765322211 1455666667777777777777777762
Q ss_pred hcCCCCChh------hHHHHHHHHH--hcCChHHHHHHHHhc-cCCccH
Q 048364 280 EYDLEPRIQ------HYGCMVDLFG--KAGFLEEAYEVIRTM-RLEPNV 319 (400)
Q Consensus 280 ~~~~~~~~~------~~~~l~~~~~--~~g~~~~a~~~~~~~-~~~p~~ 319 (400)
+.|+.. .+..++.+|. ..+++++|+..|+.+ .+.|+.
T Consensus 228 ---l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 228 ---EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp ---C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred ---hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 233211 2333444443 345677777777666 445543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.7e-10 Score=94.06 Aligned_cols=186 Identities=13% Similarity=0.018 Sum_probs=134.1
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHhccC--CC----cccHHHHHHHHHhCCChhhHHHHHHHHHHCCC-CCC-HHHHH
Q 048364 184 NEQIATILVDMYAKCGFLKYALMVFELMEE--RN----VISWTALICGSAHRGYSEDALSLFEMMQATGV-KPN-EMTFT 255 (400)
Q Consensus 184 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~-~~~~~ 255 (400)
+...+..+...+.+.|++++|...|+++.+ |+ ...+..+..+|.+.|++++|+..|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 455666777888889999999999988876 32 34677788888899999999999998887532 122 35566
Q ss_pred HHHHHHHh--------cCChhhHHHHHHHhhhhcCCCCChhhH-----------------HHHHHHHHhcCChHHHHHHH
Q 048364 256 GVLTACVH--------TGLVDEGRKYFKMIDEEYDLEPRIQHY-----------------GCMVDLFGKAGFLEEAYEVI 310 (400)
Q Consensus 256 ~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~g~~~~a~~~~ 310 (400)
.+..++.. .|++++|...|+++.+.. +.+.... ..+..+|.+.|++++|...|
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 77777777 889999999999888642 2222333 45678889999999999999
Q ss_pred Hhc-cCCcc----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCCCc---hHHHHHHHHhhcccchH
Q 048364 311 RTM-RLEPN----VIIWGSFLAACKEH----------KQFDMAERVIKQALRMVKPENDG---GVFTLICDLYTMNEKWE 372 (400)
Q Consensus 311 ~~~-~~~p~----~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~ 372 (400)
+++ ...|+ ...+..+..+|... |++++|...++++++.. | .++ .+...+...+...|+++
T Consensus 172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~-p-~~~~~~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF-P-DSPLLRTAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC-T-TCTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC-C-CChHHHHHHHHHHHHHHHHHHhh
Confidence 988 33443 44677777788766 88899999999999988 7 443 33444444555555544
Q ss_pred H
Q 048364 373 G 373 (400)
Q Consensus 373 ~ 373 (400)
+
T Consensus 250 ~ 250 (261)
T 3qky_A 250 G 250 (261)
T ss_dssp T
T ss_pred h
Confidence 4
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=5.8e-10 Score=94.52 Aligned_cols=210 Identities=11% Similarity=-0.032 Sum_probs=137.9
Q ss_pred ChHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhH
Q 048364 96 NVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF 175 (400)
Q Consensus 96 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~ 175 (400)
++++|...|++. ...|...|++++|.+.|.+.... +.+.|+..
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~----------------~~~~~~~~---------- 74 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADY----------------QKKAGNED---------- 74 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHH----------------HHHTTCHH----------
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHH----------------HHHhCCHH----------
Confidence 477777777654 55677788888888888877511 00111111
Q ss_pred HHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC-----CC----cccHHHHHHHHHhC-CChhhHHHHHHHHHHC
Q 048364 176 IVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE-----RN----VISWTALICGSAHR-GYSEDALSLFEMMQAT 245 (400)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~ 245 (400)
....+++.+..+|...|++++|...|++..+ .+ ..+++.+...|... |++++|+..|++..+.
T Consensus 75 -------~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~ 147 (292)
T 1qqe_A 75 -------EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW 147 (292)
T ss_dssp -------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Confidence 1234566677777777888877777776654 11 24677788888886 9999999999887763
Q ss_pred CCCC-C----HHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCCh-----hhHHHHHHHHHhcCChHHHHHHHHhc-c
Q 048364 246 GVKP-N----EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRI-----QHYGCMVDLFGKAGFLEEAYEVIRTM-R 314 (400)
Q Consensus 246 ~~~p-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~-~ 314 (400)
.... + ..++..+...+.+.|++++|...|++..+...-.+.. ..|..+..++...|++++|...|++. .
T Consensus 148 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 148 YAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1110 1 3467788888999999999999999888532111221 14677788888999999999999888 5
Q ss_pred CCccHH------HHHHHHHHHH--hcCCHHHHHHHHHHHHHcC
Q 048364 315 LEPNVI------IWGSFLAACK--EHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 315 ~~p~~~------~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~ 349 (400)
+.|+.. .+..++.++. ..+++++|...|+++....
T Consensus 228 l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~ 270 (292)
T 1qqe_A 228 EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLD 270 (292)
T ss_dssp C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCC
T ss_pred hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccH
Confidence 555432 2344555554 4566888888887765555
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.22 E-value=6.9e-08 Score=90.46 Aligned_cols=349 Identities=9% Similarity=0.060 Sum_probs=215.3
Q ss_pred hHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCC---CChhhHHHHHHHHHcCCC---hHHHHHHH
Q 048364 32 LTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPE---RNAVTWNTMIKGYSKSGN---VCEARDFF 104 (400)
Q Consensus 32 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~---~~~a~~~~ 104 (400)
.......++..+...+ -|...|..++..+ ..+.++.+..+|+.+.. .....|...+..-.+.++ ++.+.++|
T Consensus 48 ~~d~i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp CSCHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 3445556677766654 3888999999999 99999999999999874 356678888888888888 99999999
Q ss_pred hhCC--C---CChhhHHHHHHHHHhcCCc--------chHHHHHHHHHhcCCC-CCCH-HHHHHHHHHhh---------c
Q 048364 105 ERMP--L---RNVASWSAMIAAYLNAGAY--------DPGLKLFREMISNEGL-TPDQ-MTIGAVLSGCS---------H 160 (400)
Q Consensus 105 ~~~~--~---~~~~~~~~l~~~~~~~g~~--------~~a~~~~~~m~~~~~~-~p~~-~~~~~ll~~~~---------~ 160 (400)
++.. . |++..|..-+....+.++. +.+.++|+..+..-|. .|+. ..|...+.... .
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 9976 3 7888888877766665554 3345788887756677 6654 46665554332 2
Q ss_pred ccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHH-------------hcCCHHHHHHH--------------------
Q 048364 161 LGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYA-------------KCGFLKYALMV-------------------- 207 (400)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------~~g~~~~A~~~-------------------- 207 (400)
.++.+. +..+++.++.........+|......-. ...+++.|...
T Consensus 207 q~~~~~--~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~ 284 (679)
T 4e6h_A 207 QQRVQY--IRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLN 284 (679)
T ss_dssp HHHHHH--HHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSST
T ss_pred HhHHHH--HHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccc
Confidence 234455 6666666664322211222211110000 00112222222
Q ss_pred -----------------------------------------------HHhccC---CCcccHHHHHHHHHhCCChhhHH-
Q 048364 208 -----------------------------------------------FELMEE---RNVISWTALICGSAHRGYSEDAL- 236 (400)
Q Consensus 208 -----------------------------------------------~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~- 236 (400)
|++... .....|...+..+...|+.++|.
T Consensus 285 ~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r 364 (679)
T 4e6h_A 285 QATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVIT 364 (679)
T ss_dssp TCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHH
T ss_pred cchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHH
Confidence 222221 12223444444455667777775
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhc--------CCCCC------------hhhHHHHHHH
Q 048364 237 SLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEY--------DLEPR------------IQHYGCMVDL 296 (400)
Q Consensus 237 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~------------~~~~~~l~~~ 296 (400)
.+|++.... ++.+...+...+....+.|+++.|.++|+.+.... .-.|+ ..+|...+..
T Consensus 365 ~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~ 443 (679)
T 4e6h_A 365 KYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT 443 (679)
T ss_dssp HHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH
Confidence 888777654 33344555666666777788888888888777421 00121 2356667777
Q ss_pred HHhcCChHHHHHHHHhc-cC-C-ccHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchH
Q 048364 297 FGKAGFLEEAYEVIRTM-RL-E-PNVIIWGSFLAACKEH-KQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWE 372 (400)
Q Consensus 297 ~~~~g~~~~a~~~~~~~-~~-~-p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 372 (400)
..+.|+.+.|..+|.+. .. . +....|...+..-.+. ++.+.|..+|+..++.. | .++..+...+......|+.+
T Consensus 444 erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~-p-~~~~~w~~y~~fe~~~~~~~ 521 (679)
T 4e6h_A 444 MKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF-A-TDGEYINKYLDFLIYVNEES 521 (679)
T ss_dssp HHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH-T-TCHHHHHHHHHHHHHHTCHH
T ss_pred HHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-C-CchHHHHHHHHHHHhCCCHH
Confidence 77778888888888877 22 1 1223333322222333 44788888888888876 6 66667777777777788888
Q ss_pred HHHHHHHHHhcccc
Q 048364 373 GAERVRKLMLNQNV 386 (400)
Q Consensus 373 ~a~~~~~~m~~~~~ 386 (400)
.|+.+|++......
T Consensus 522 ~AR~lferal~~~~ 535 (679)
T 4e6h_A 522 QVKSLFESSIDKIS 535 (679)
T ss_dssp HHHHHHHHHTTTSS
T ss_pred HHHHHHHHHHHhcC
Confidence 88888888776543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.21 E-value=6.4e-10 Score=81.91 Aligned_cols=126 Identities=18% Similarity=0.236 Sum_probs=68.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHh
Q 048364 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKE 331 (400)
Q Consensus 254 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~ 331 (400)
+..+...+...|++++|..+++.+.+. .+.+...+..+...+...|++++|...++++ ...| +...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 334444555555555555555555432 1223444555555555555555555555555 2222 34455555566666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 332 HKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 332 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
.|++++|...++++.+.. | .+..++..++.++...|++++|...++++.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-P-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-T-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-C-CChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 666666666666666655 5 4555666666666666666666666665543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.5e-09 Score=90.36 Aligned_cols=169 Identities=12% Similarity=0.064 Sum_probs=135.0
Q ss_pred CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCC-hhh
Q 048364 214 RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPN---EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR-IQH 289 (400)
Q Consensus 214 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~ 289 (400)
.+...+..+...+.+.|++++|+..|+++.+.... + ...+..+..++.+.|++++|...|+.+.+...-.|. ...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 35566777788899999999999999999886321 2 567888899999999999999999999965322222 456
Q ss_pred HHHHHHHHHh--------cCChHHHHHHHHhc-cCCccH-HHH-----------------HHHHHHHHhcCCHHHHHHHH
Q 048364 290 YGCMVDLFGK--------AGFLEEAYEVIRTM-RLEPNV-IIW-----------------GSFLAACKEHKQFDMAERVI 342 (400)
Q Consensus 290 ~~~l~~~~~~--------~g~~~~a~~~~~~~-~~~p~~-~~~-----------------~~l~~~~~~~~~~~~a~~~~ 342 (400)
+..+..++.. .|++++|...|++. ...|+. ... ..+...|...|++++|+..+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 7778888988 99999999999998 434432 222 45678899999999999999
Q ss_pred HHHHHcCCCCC--CchHHHHHHHHhhcc----------cchHHHHHHHHHHhcc
Q 048364 343 KQALRMVKPEN--DGGVFTLICDLYTMN----------EKWEGAERVRKLMLNQ 384 (400)
Q Consensus 343 ~~~~~~~~~~~--~~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~ 384 (400)
+++++.. |.. ....+..++.+|... |++++|...++++.+.
T Consensus 172 ~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 172 EAVFDAY-PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHC-TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHC-CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 9999988 622 346888888899866 8999999999998763
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.16 E-value=2.2e-09 Score=79.00 Aligned_cols=130 Identities=18% Similarity=0.252 Sum_probs=102.9
Q ss_pred cHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHH
Q 048364 218 SWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297 (400)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 297 (400)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|..+++.+.+. .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 45667777888888888888888887653 235677777888888889999999999888753 234566788888889
Q ss_pred HhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048364 298 GKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKP 351 (400)
Q Consensus 298 ~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 351 (400)
...|++++|.+.++++ ...| +...+..+...+...|++++|...++++.+.. |
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~ 134 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-P 134 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS-T
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC-C
Confidence 9999999999999887 3333 56778888889999999999999999998877 5
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.4e-10 Score=108.45 Aligned_cols=180 Identities=11% Similarity=-0.093 Sum_probs=142.8
Q ss_pred HhcCCHHHHHHHHHhcc--------C---CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048364 196 AKCGFLKYALMVFELME--------E---RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHT 264 (400)
Q Consensus 196 ~~~g~~~~A~~~~~~~~--------~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 264 (400)
...|++++|.+.+++.. + .+...+..+...+...|++++|+..|++..+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 67899999999998876 3 355678888889999999999999999988763 22567888888889999
Q ss_pred CChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHH
Q 048364 265 GLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVI 342 (400)
Q Consensus 265 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~ 342 (400)
|++++|...|+++.+. .+.+...+..+..+|.+.|++++ .+.|++. ...| +...|..+..++.+.|++++|...|
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999998853 23356788889999999999999 9999887 5555 5668888999999999999999999
Q ss_pred HHHHHcCCCCCCchHHHHHHHHhhcccc--------hHHHHHHHHHH
Q 048364 343 KQALRMVKPENDGGVFTLICDLYTMNEK--------WEGAERVRKLM 381 (400)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~a~~~~~~m 381 (400)
+++.+.+ | .+..++..+..++...|+ +++|.+.+..+
T Consensus 558 ~~al~l~-P-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 558 DEVPPTS-R-HFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HTSCTTS-T-THHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred HhhcccC-c-ccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 9999888 7 778888888888876544 55555555443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.15 E-value=2.7e-09 Score=86.64 Aligned_cols=182 Identities=12% Similarity=0.012 Sum_probs=117.3
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHhccC--CCc----ccHHHHHHHHHhCCChhhHHHHHHHHHHCCCC-CCH-HHHH
Q 048364 184 NEQIATILVDMYAKCGFLKYALMVFELMEE--RNV----ISWTALICGSAHRGYSEDALSLFEMMQATGVK-PNE-MTFT 255 (400)
Q Consensus 184 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~~-~~~~ 255 (400)
+...+..+...+.+.|++++|...|+++.+ |+. ..+..+..+|.+.|++++|+..|+++.+.... +.. ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 344556677778888999999988888775 332 35677788888889999999888888775322 111 2344
Q ss_pred HHHHHHHh------------------cCChhhHHHHHHHhhhhcCCCCCh-hhHHHHHHHHHhcCChHHHHHHHHhccCC
Q 048364 256 GVLTACVH------------------TGLVDEGRKYFKMIDEEYDLEPRI-QHYGCMVDLFGKAGFLEEAYEVIRTMRLE 316 (400)
Q Consensus 256 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 316 (400)
.+..++.. .|++++|...|+.+.+. .|+. ..+...... + .+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l----~------~~~~~~--- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRL----V------FLKDRL--- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHH----H------HHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHH----H------HHHHHH---
Confidence 44444443 34566666666666532 2222 221111100 0 000000
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCc---hHHHHHHHHhhcccchHHHHHHHHHHhccc
Q 048364 317 PNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG---GVFTLICDLYTMNEKWEGAERVRKLMLNQN 385 (400)
Q Consensus 317 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 385 (400)
......+...|.+.|++++|...++++++.. | .++ .++..++.+|.+.|++++|.+.++.+...+
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p-~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-P-DTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-T-TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-c-CCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 0111345677889999999999999999988 7 443 578889999999999999999999887644
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.1e-10 Score=88.27 Aligned_cols=142 Identities=12% Similarity=0.042 Sum_probs=101.2
Q ss_pred HHHHHhCCChhhHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcC
Q 048364 223 ICGSAHRGYSEDALSLFEMMQATGVKP-NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301 (400)
Q Consensus 223 ~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 301 (400)
...+...|++++|+..+++.... .| +...+..+...|.+.|++++|++.|++..+. -+.+...|..+..+|.+.|
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 34455567777777777766543 22 2344556777788888888888888887743 2335677888888888888
Q ss_pred ChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHH-HHHHHHHcCCCCCCchHHHHHHHHhhcccc
Q 048364 302 FLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAER-VIKQALRMVKPENDGGVFTLICDLYTMNEK 370 (400)
Q Consensus 302 ~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 370 (400)
++++|...|++. .+.| +...|..+...|.+.|++++|.. +++++++.. | .++.+|......+...|+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P-~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-P-GSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-T-TCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-c-CCHHHHHHHHHHHHHhCc
Confidence 888888888887 5556 46678888888888888876555 458888888 8 788888887777777664
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.5e-09 Score=85.61 Aligned_cols=166 Identities=7% Similarity=-0.029 Sum_probs=117.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccC--C-CcccHHH----------------HHHHHHhCCChhhHHHHHHHHHHCCCCCC
Q 048364 190 ILVDMYAKCGFLKYALMVFELMEE--R-NVISWTA----------------LICGSAHRGYSEDALSLFEMMQATGVKPN 250 (400)
Q Consensus 190 ~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 250 (400)
.....+...|++++|...|++..+ | +...|.. +..+|.+.|++++|+..|++..+.. +-+
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~ 87 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PNN 87 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCC
Confidence 344556677888888888877765 2 2334555 7888899999999999999988863 225
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCC--hHHHHHHHHhc-cCCccHHHHHHHHH
Q 048364 251 EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF--LEEAYEVIRTM-RLEPNVIIWGSFLA 327 (400)
Q Consensus 251 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~-~~~p~~~~~~~l~~ 327 (400)
...+..+..++...|++++|...|+++.+. -+.+...+..+..+|...|+ ...+...++.. ...|....+.....
T Consensus 88 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~ 165 (208)
T 3urz_A 88 VDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGL 165 (208)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 678888888999999999999999998853 23456778888888766554 44556666665 33344444555566
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHH
Q 048364 328 ACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361 (400)
Q Consensus 328 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 361 (400)
++...|++++|...|+++++.. | +......+
T Consensus 166 ~~~~~~~~~~A~~~~~~al~l~-P--~~~~~~~l 196 (208)
T 3urz_A 166 SKLFTTRYEKARNSLQKVILRF-P--STEAQKTL 196 (208)
T ss_dssp HHHHHHTHHHHHHHHHHHTTTS-C--CHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC-C--CHHHHHHH
Confidence 7777889999999999999888 6 44433333
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=5e-09 Score=88.39 Aligned_cols=172 Identities=8% Similarity=-0.025 Sum_probs=128.3
Q ss_pred HHHHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCC
Q 048364 205 LMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLE 284 (400)
Q Consensus 205 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 284 (400)
...+......+...+..+...+...|++++|...|++..+.. +-+...+..+..++.+.|++++|...++.+... .
T Consensus 106 ~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~ 181 (287)
T 3qou_A 106 RALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---D 181 (287)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---G
T ss_pred HHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---h
Confidence 333444333344556677778888899999999998887763 225677888888888999999999999888743 3
Q ss_pred CChhhHH-HHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC--chHHH
Q 048364 285 PRIQHYG-CMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEND--GGVFT 359 (400)
Q Consensus 285 ~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ 359 (400)
|+..... .....+...++.++|...+++. ...| +...+..+...+...|++++|...++++++.. | .+ ...+.
T Consensus 182 p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~-p-~~~~~~a~~ 259 (287)
T 3qou_A 182 QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXD-L-TAADGQTRX 259 (287)
T ss_dssp CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-TGGGGHHHH
T ss_pred cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-c-ccccchHHH
Confidence 4443322 2333466777888888888877 4445 56778888889999999999999999999988 7 44 77888
Q ss_pred HHHHHhhcccchHHHHHHHHHHh
Q 048364 360 LICDLYTMNEKWEGAERVRKLML 382 (400)
Q Consensus 360 ~l~~~~~~~g~~~~a~~~~~~m~ 382 (400)
.++.++...|+.++|...+++..
T Consensus 260 ~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 260 TFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcHHHHHHHHH
Confidence 99999999999999888887654
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.08 E-value=9.5e-09 Score=82.47 Aligned_cols=161 Identities=9% Similarity=-0.067 Sum_probs=90.1
Q ss_pred CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----ChhhHHHHHHHhhhhcCCCCChhhH
Q 048364 215 NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTG----LVDEGRKYFKMIDEEYDLEPRIQHY 290 (400)
Q Consensus 215 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~ 290 (400)
++..+..+...|...+++++|+..|++..+.| +...+..+...|.. + ++++|..+|++..+. .+...+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a~ 88 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSGE 88 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHHH
Confidence 34444445555555555555555555555543 33444444444444 4 566666666665531 244455
Q ss_pred HHHHHHHHh----cCChHHHHHHHHhc-cCCcc---HHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCCchHH
Q 048364 291 GCMVDLFGK----AGFLEEAYEVIRTM-RLEPN---VIIWGSFLAACKE----HKQFDMAERVIKQALRMVKPENDGGVF 358 (400)
Q Consensus 291 ~~l~~~~~~----~g~~~~a~~~~~~~-~~~p~---~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 358 (400)
..|...|.. .+++++|.+.|++. ...|+ ...+..|...|.. .+++++|..+|++..+.+ .++..+
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~---~~~~a~ 165 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS---RTGYAE 165 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS---CTTHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC---CCHHHH
Confidence 555555555 56666666666666 33332 4555666666665 566777777777766652 234456
Q ss_pred HHHHHHhhcc-c-----chHHHHHHHHHHhcccc
Q 048364 359 TLICDLYTMN-E-----KWEGAERVRKLMLNQNV 386 (400)
Q Consensus 359 ~~l~~~~~~~-g-----~~~~a~~~~~~m~~~~~ 386 (400)
..|..+|... | ++++|...+++..+.|.
T Consensus 166 ~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 166 YWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 6666666543 2 66777777766666554
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.06 E-value=1.3e-08 Score=82.54 Aligned_cols=181 Identities=13% Similarity=-0.031 Sum_probs=130.2
Q ss_pred CHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccc--hHHHHHHHHHHHHhcCCHHHHHHHHHhccC--CCcc----c
Q 048364 147 DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWEL--NEQIATILVDMYAKCGFLKYALMVFELMEE--RNVI----S 218 (400)
Q Consensus 147 ~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~----~ 218 (400)
+...+..+...+.+.|+++. |...++.+.+..... ....+..+..+|.+.|++++|...|+++.+ |+.. .
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~--A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQ--AITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHH--HHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHH
Confidence 34556667788999999999 999999998864322 246788899999999999999999999875 4322 3
Q ss_pred HHHHHHHHHh------------------CCChhhHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhhHHHHHHHhhh
Q 048364 219 WTALICGSAH------------------RGYSEDALSLFEMMQATGVKPNEM-TFTGVLTACVHTGLVDEGRKYFKMIDE 279 (400)
Q Consensus 219 ~~~l~~~~~~------------------~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~ 279 (400)
+..+..++.. .|++++|+..|+++.+. .|+.. ........ ..+...+.
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l----------~~~~~~~~- 147 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL----------VFLKDRLA- 147 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----------HHHHHHHH-
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----------HHHHHHHH-
Confidence 4555555553 57899999999999886 34432 22211110 01111111
Q ss_pred hcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCcc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048364 280 EYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPN----VIIWGSFLAACKEHKQFDMAERVIKQALRMVKP 351 (400)
Q Consensus 280 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 351 (400)
.....+...|.+.|++++|...|+++ ...|+ ...+..+..++.+.|++++|...++.+...+ |
T Consensus 148 --------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~-~ 215 (225)
T 2yhc_A 148 --------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS-S 215 (225)
T ss_dssp --------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC-S
T ss_pred --------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-C
Confidence 11234677889999999999999998 44443 2467888999999999999999999998887 6
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=4.3e-09 Score=98.06 Aligned_cols=160 Identities=11% Similarity=0.030 Sum_probs=122.3
Q ss_pred cCCHHHHHHHHHhccC--C-CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHH
Q 048364 198 CGFLKYALMVFELMEE--R-NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYF 274 (400)
Q Consensus 198 ~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 274 (400)
.|++++|.+.|++..+ | +...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999998876 2 45678889999999999999999999998863 235778889999999999999999999
Q ss_pred HHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHcC
Q 048364 275 KMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEH---KQFDMAERVIKQALRMV 349 (400)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~ 349 (400)
++..+. .+.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+..++... |++++|...++++++.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999853 2345778999999999999999999999998 4455 567888899999999 99999999999999999
Q ss_pred CCCCCchHHHHHH
Q 048364 350 KPENDGGVFTLIC 362 (400)
Q Consensus 350 ~~~~~~~~~~~l~ 362 (400)
| .+...+..+.
T Consensus 159 -p-~~~~~~~~l~ 169 (568)
T 2vsy_A 159 -V-GAVEPFAFLS 169 (568)
T ss_dssp -C-CCSCHHHHTT
T ss_pred -C-cccChHHHhC
Confidence 8 6666776655
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.05 E-value=4.3e-09 Score=81.77 Aligned_cols=76 Identities=12% Similarity=0.084 Sum_probs=43.4
Q ss_pred HHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-CchHHHHHHHHhhcccchHHHHHHHHHHh
Q 048364 306 AYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEN-DGGVFTLICDLYTMNEKWEGAERVRKLML 382 (400)
Q Consensus 306 a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 382 (400)
|...+++. ...| +...+..+..++...|++++|...++++++.. |.+ +...+..++.++...|+.++|...+++..
T Consensus 93 a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 93 ELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVN-LGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-cccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 44555544 3334 34555566666666666666666666666665 421 24456666666666666666666665543
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.04 E-value=2.5e-09 Score=83.16 Aligned_cols=158 Identities=11% Similarity=-0.033 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHH-H
Q 048364 186 QIATILVDMYAKCGFLKYALMVFELMEE---RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTA-C 261 (400)
Q Consensus 186 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~ 261 (400)
..+..+...+...|++++|...|++..+ .+...+..+...+...|++++|+..+++..... |+.......... +
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 3455677889999999999999999886 356788899999999999999999999886653 344433322212 2
Q ss_pred HhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCcc---HHHHHHHHHHHHhcCCHHH
Q 048364 262 VHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPN---VIIWGSFLAACKEHKQFDM 337 (400)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~---~~~~~~l~~~~~~~~~~~~ 337 (400)
...+....|...++...+. .+.+...+..+..++...|++++|...|+++ ...|+ ...+..+..++...|+.++
T Consensus 85 ~~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HhhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 2333445578889888853 2335788899999999999999999999998 66664 4578899999999999999
Q ss_pred HHHHHHHHHH
Q 048364 338 AERVIKQALR 347 (400)
Q Consensus 338 a~~~~~~~~~ 347 (400)
|...+++.+.
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998865
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.03 E-value=4.3e-08 Score=83.02 Aligned_cols=161 Identities=9% Similarity=-0.087 Sum_probs=84.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccCC--Cc-------ccHHHHHHHHHhCCChhhHHHHHHHHHHCCC---CCC--HH
Q 048364 187 IATILVDMYAKCGFLKYALMVFELMEER--NV-------ISWTALICGSAHRGYSEDALSLFEMMQATGV---KPN--EM 252 (400)
Q Consensus 187 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~-------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---~p~--~~ 252 (400)
.+...+..+...|++++|.+.+++..+. .. ..+..+...+...|++++|+..+++...... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3344556666777777777766554431 10 1123344445556666666666666554211 111 23
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhh---hcCCCC--ChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCcc-------H
Q 048364 253 TFTGVLTACVHTGLVDEGRKYFKMIDE---EYDLEP--RIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPN-------V 319 (400)
Q Consensus 253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~-------~ 319 (400)
+++.+...|...|++++|...++++.+ ..+..+ ...++..+..+|...|++++|.+.+++. .+.++ .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 555666666666666666666665552 111111 1135555666666666666666666654 11111 3
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 048364 320 IIWGSFLAACKEHKQFDMA-ERVIKQALR 347 (400)
Q Consensus 320 ~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 347 (400)
.+|..+..+|...|++++| ...++++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 4555566666666666666 555555543
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=7.1e-09 Score=96.56 Aligned_cols=146 Identities=9% Similarity=-0.080 Sum_probs=73.9
Q ss_pred cchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHhCCChhhHHHH
Q 048364 162 GSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE---RNVISWTALICGSAHRGYSEDALSL 238 (400)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~ 238 (400)
|++++ |...++...+.. +.+...+..+...|...|++++|.+.|++..+ .+...+..+...|...|++++|...
T Consensus 3 g~~~~--A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 3 ADGPR--ELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHH--HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 44455 555555554432 12345555666666666666666666666554 1334555566666666666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhc---CChHHHHHHHHhc
Q 048364 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA---GFLEEAYEVIRTM 313 (400)
Q Consensus 239 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~ 313 (400)
+++..+.. +.+...+..+..++.+.|++++|.+.+++..+. .+.+...+..+..++... |++++|.+.+++.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 66665542 223455566666666666666666666666532 122345555666666666 6666666666655
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.01 E-value=5.3e-09 Score=83.71 Aligned_cols=158 Identities=11% Similarity=0.026 Sum_probs=121.7
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHHCCCCCC-HHHHHH----------------HHHHHHhcCChhhHHHHHHHhhhhcCC
Q 048364 221 ALICGSAHRGYSEDALSLFEMMQATGVKPN-EMTFTG----------------VLTACVHTGLVDEGRKYFKMIDEEYDL 283 (400)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~~~~ 283 (400)
.....+...|++++|+..|++..+. .|+ ...+.. +..++.+.|++++|...|++..+. .
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~ 84 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--A 84 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--C
Confidence 3456678899999999999999886 343 445666 888899999999999999999853 2
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCCchHHH
Q 048364 284 EPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQ--FDMAERVIKQALRMVKPENDGGVFT 359 (400)
Q Consensus 284 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~ 359 (400)
+.+...+..+..+|...|++++|...|++. .+.| +...+..+..+|...|+ .+.+...++.... |.+....+.
T Consensus 85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~a~~ 161 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS---PTKMQYARY 161 (208)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C---CCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC---CCchhHHHH
Confidence 346788999999999999999999999998 5566 56788888888876654 4455566666542 323444566
Q ss_pred HHHHHhhcccchHHHHHHHHHHhccc
Q 048364 360 LICDLYTMNEKWEGAERVRKLMLNQN 385 (400)
Q Consensus 360 ~l~~~~~~~g~~~~a~~~~~~m~~~~ 385 (400)
....++...|++++|...|++..+..
T Consensus 162 ~~g~~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 162 RDGLSKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 67778888999999999999998743
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.00 E-value=1.3e-07 Score=80.08 Aligned_cols=93 Identities=12% Similarity=0.131 Sum_probs=42.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhc-----cC---Ccc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCCCch
Q 048364 290 YGCMVDLFGKAGFLEEAYEVIRTM-----RL---EPN-VIIWGSFLAACKEHKQFDMAERVIKQALRMVK----PENDGG 356 (400)
Q Consensus 290 ~~~l~~~~~~~g~~~~a~~~~~~~-----~~---~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~ 356 (400)
++.+..+|...|++++|...|+++ .. .|. ..++..+...|.+.|++++|...++++++... ...-..
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 444444455555555544444443 00 111 12444555555555555555555555443210 101244
Q ss_pred HHHHHHHHhhcccc-hHHHHHHHHHHh
Q 048364 357 VFTLICDLYTMNEK-WEGAERVRKLML 382 (400)
Q Consensus 357 ~~~~l~~~~~~~g~-~~~a~~~~~~m~ 382 (400)
++..++.+|...|+ +++|.+.+++..
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 55555555555552 355555555443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.99 E-value=5.8e-08 Score=77.84 Aligned_cols=171 Identities=10% Similarity=-0.076 Sum_probs=136.9
Q ss_pred hhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCC-CcccHHHHHHHHHhCC----ChhhHHHHHHHHH
Q 048364 169 GKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEER-NVISWTALICGSAHRG----YSEDALSLFEMMQ 243 (400)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~~----~~~~a~~~~~~m~ 243 (400)
|...+....+.| ++..+..|...|...+++++|...|++..+. ++..+..+...|.. + ++++|+..|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 555666666554 6677788888899999999999999988764 56778888888877 6 8999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHhhhhcCCCCC---hhhHHHHHHHHHh----cCChHHHHHHHHh
Q 048364 244 ATGVKPNEMTFTGVLTACVH----TGLVDEGRKYFKMIDEEYDLEPR---IQHYGCMVDLFGK----AGFLEEAYEVIRT 312 (400)
Q Consensus 244 ~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~----~g~~~~a~~~~~~ 312 (400)
+.| +...+..+...|.. .+++++|..+|++..+. .|+ +..+..|...|.. .+++++|...|++
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 765 56677778888877 78999999999999842 332 6788889999988 8899999999999
Q ss_pred c-cCCccHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcC
Q 048364 313 M-RLEPNVIIWGSFLAACKEH-K-----QFDMAERVIKQALRMV 349 (400)
Q Consensus 313 ~-~~~p~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~ 349 (400)
. ...++...+..|...|... | ++++|..++++..+.+
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 8 4334556777777777653 3 8999999999999998
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.99 E-value=7.4e-09 Score=88.36 Aligned_cols=220 Identities=9% Similarity=0.021 Sum_probs=152.7
Q ss_pred hcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhc-ccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHH
Q 048364 124 NAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSH-LGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLK 202 (400)
Q Consensus 124 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 202 (400)
..|++++|.+++++..+.. +. .+.+ .++++. +. ..|......|...|+++
T Consensus 3 ~~~~~~eA~~~~~~a~k~~---~~---------~~~~~~~~~~~--A~---------------~~~~~a~~~~~~~g~~~ 53 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL---KT---------SFMKWKPDYDS--AA---------------SEYAKAAVAFKNAKQLE 53 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH---CC---------CSSSCSCCHHH--HH---------------HHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHHHc---cc---------cccCCCCCHHH--HH---------------HHHHHHHHHHHHcCCHH
Confidence 3567788888888776221 11 1222 344444 33 34555667888999999
Q ss_pred HHHHHHHhccC-----CC----cccHHHHHHHHHhCCChhhHHHHHHHHHHCC---CCCC--HHHHHHHHHHHHhcCChh
Q 048364 203 YALMVFELMEE-----RN----VISWTALICGSAHRGYSEDALSLFEMMQATG---VKPN--EMTFTGVLTACVHTGLVD 268 (400)
Q Consensus 203 ~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---~~p~--~~~~~~l~~~~~~~~~~~ 268 (400)
+|...|.+..+ .+ ..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+..+|.. |+++
T Consensus 54 ~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~ 132 (307)
T 2ifu_A 54 QAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLS 132 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHH
Confidence 99999987764 11 3478888899999999999999999876531 1222 3567788888888 9999
Q ss_pred hHHHHHHHhhhhcCCCC----ChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc------c-HHHHHHHHHHHHhcCCHH
Q 048364 269 EGRKYFKMIDEEYDLEP----RIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP------N-VIIWGSFLAACKEHKQFD 336 (400)
Q Consensus 269 ~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p------~-~~~~~~l~~~~~~~~~~~ 336 (400)
+|...|++..+-..-.. ...++..+...|.+.|++++|...|++. .+.| . ...+..+..++...|+++
T Consensus 133 ~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~ 212 (307)
T 2ifu_A 133 KAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYV 212 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHH
Confidence 99999998874321111 1457888999999999999999999988 2211 1 235667777888889999
Q ss_pred HHHHHHHHHHHcCCCCCCch----HHHHHHHHhhcccchHHHHH
Q 048364 337 MAERVIKQALRMVKPENDGG----VFTLICDLYTMNEKWEGAER 376 (400)
Q Consensus 337 ~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~ 376 (400)
+|...+++.. .. |..... ....++.++ ..|+.+.+.+
T Consensus 213 ~A~~~~~~al-~~-p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 213 AAQKCVRESY-SI-PGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHT-TS-TTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHh-CC-CCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 9999999999 66 622211 234445545 5677666655
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=9e-09 Score=86.84 Aligned_cols=163 Identities=12% Similarity=-0.053 Sum_probs=130.5
Q ss_pred ccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHH-H
Q 048364 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEE--R-NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFT-G 256 (400)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~ 256 (400)
.+.+...+..+...+...|++++|...|++..+ | +...+..+...+...|++++|...++++... .|+..... .
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 345666777888889999999999999998875 3 4567888899999999999999999988665 44544332 2
Q ss_pred HHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCcc---HHHHHHHHHHHHhc
Q 048364 257 VLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPN---VIIWGSFLAACKEH 332 (400)
Q Consensus 257 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~---~~~~~~l~~~~~~~ 332 (400)
....+...++.+.|...+++.... -+.+...+..+...|...|++++|...|+++ ...|+ ...+..++..+...
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 233466778888899999988853 2456788899999999999999999999998 44553 56889999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 048364 333 KQFDMAERVIKQALR 347 (400)
Q Consensus 333 ~~~~~a~~~~~~~~~ 347 (400)
|+.++|...+++.+.
T Consensus 269 g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 269 GTGDALASXYRRQLY 283 (287)
T ss_dssp CTTCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH
Confidence 999999999988764
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.97 E-value=3.3e-08 Score=83.69 Aligned_cols=166 Identities=8% Similarity=-0.031 Sum_probs=124.6
Q ss_pred cHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCC----hh
Q 048364 218 SWTALICGSAHRGYSEDALSLFEMMQATGVKPNE-----MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR----IQ 288 (400)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~ 288 (400)
.+...+..+...|++++|.+.+.+..+.....+. ..+..+...+...|++++|...+++..+......+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4445677888999999999999988775322111 22344556677889999999999988742111111 34
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhc----cCCcc-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCCCc
Q 048364 289 HYGCMVDLFGKAGFLEEAYEVIRTM----RLEPN-----VIIWGSFLAACKEHKQFDMAERVIKQALRMVK----PENDG 355 (400)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~----~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~ 355 (400)
+++.+...|...|++++|...|++. ...|+ ..++..+...|...|++++|...+++.++... +....
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7889999999999999999999887 11222 25888999999999999999999999887541 10126
Q ss_pred hHHHHHHHHhhcccchHHH-HHHHHHHhc
Q 048364 356 GVFTLICDLYTMNEKWEGA-ERVRKLMLN 383 (400)
Q Consensus 356 ~~~~~l~~~~~~~g~~~~a-~~~~~~m~~ 383 (400)
.+|..++.+|...|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 7889999999999999999 777776653
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=3.1e-09 Score=80.16 Aligned_cols=140 Identities=6% Similarity=-0.112 Sum_probs=93.2
Q ss_pred HHHHHhcCCHHHHHHHHHhccCC---CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 048364 192 VDMYAKCGFLKYALMVFELMEER---NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVD 268 (400)
Q Consensus 192 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 268 (400)
..++...|++++|...++..... +...+..+...|.+.|++++|+..|++..+.. +-+..+|..+..++...|+++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchH
Confidence 34455567777787777776653 34556677778888888888888888877753 225677777888888888888
Q ss_pred hHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHH-HHhc-cCCc-cHHHHHHHHHHHHhcCC
Q 048364 269 EGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEV-IRTM-RLEP-NVIIWGSFLAACKEHKQ 334 (400)
Q Consensus 269 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~-~~~p-~~~~~~~l~~~~~~~~~ 334 (400)
+|...|+...+. -+.+...+..+...|.+.|++++|.+. +++. .+.| +..+|......+...|+
T Consensus 83 ~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 888888887742 123566777788888888887765554 4554 5555 44556655555555553
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.96 E-value=3.4e-08 Score=93.78 Aligned_cols=169 Identities=9% Similarity=-0.048 Sum_probs=127.7
Q ss_pred hcccchhhhhhhhhhhHHH--------hccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHH
Q 048364 159 SHLGSVGLLMGKSAHGFIV--------KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE---RNVISWTALICGSA 227 (400)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 227 (400)
...|++++ |...++.+. +. .+.+...+..+..+|...|++++|.+.|++..+ .+...|..+..++.
T Consensus 402 ~~~~~~~~--A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQ--TLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHH--HHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred ccccCHHH--HHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHH
Confidence 66777777 777777776 22 233566778888888899999999999988875 35567888888889
Q ss_pred hCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHH
Q 048364 228 HRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAY 307 (400)
Q Consensus 228 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 307 (400)
..|++++|+..|++..+... -+...+..+..++.+.|++++ .+.|+++.+. -+.+...|..+..+|.+.|++++|.
T Consensus 479 ~~g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999998887632 255777888888889999999 9999888853 2335677888889999999999999
Q ss_pred HHHHhc-cCCcc-HHHHHHHHHHHHhcCC
Q 048364 308 EVIRTM-RLEPN-VIIWGSFLAACKEHKQ 334 (400)
Q Consensus 308 ~~~~~~-~~~p~-~~~~~~l~~~~~~~~~ 334 (400)
+.|++. ...|+ ...+..+..++...++
T Consensus 555 ~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 555 RTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 999988 66675 4567777777766544
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.95 E-value=5.7e-08 Score=77.84 Aligned_cols=91 Identities=14% Similarity=-0.097 Sum_probs=68.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 048364 188 ATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLV 267 (400)
Q Consensus 188 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 267 (400)
+..+...+...|++++|...|++...++...|..+...|...|++++|+..|++..... +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 44566677788888888888888877777777778888888888888888888777653 23556777777777888888
Q ss_pred hhHHHHHHHhhh
Q 048364 268 DEGRKYFKMIDE 279 (400)
Q Consensus 268 ~~a~~~~~~~~~ 279 (400)
++|...++...+
T Consensus 88 ~~A~~~~~~al~ 99 (213)
T 1hh8_A 88 DLAIKDLKEALI 99 (213)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888877774
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.94 E-value=4e-08 Score=78.77 Aligned_cols=120 Identities=14% Similarity=0.130 Sum_probs=62.1
Q ss_pred HHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCC
Q 048364 257 VLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQ 334 (400)
Q Consensus 257 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~ 334 (400)
+...+...|++++|...|++.. .|+...+..+..+|...|++++|.+.|++. ...| +...+..+..++...|+
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHccc
Confidence 3344445555555555555443 234445555555555555555555555554 2222 33445555555555555
Q ss_pred HHHHHHHHHHHHHcCCCCCCc----------------hHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 335 FDMAERVIKQALRMVKPENDG----------------GVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 335 ~~~a~~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
+++|...++++.+.. | .+. .++..++.+|...|++++|.+.+++..+
T Consensus 87 ~~~A~~~~~~al~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 87 YDLAIKDLKEALIQL-R-GNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHHHHHHTT-T-TCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhC-C-CccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 555555555555544 3 222 4555555555555555555555555544
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.93 E-value=1.5e-07 Score=79.67 Aligned_cols=203 Identities=9% Similarity=-0.075 Sum_probs=143.0
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchH---HHHHHHHHHHHhcCCHHHHHHHH
Q 048364 132 LKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNE---QIATILVDMYAKCGFLKYALMVF 208 (400)
Q Consensus 132 ~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~ 208 (400)
...+..+. .....|+..+...+...+.- .+-..+... ...+. ..+...+..+...|++++|..++
T Consensus 31 ~~~~s~~e-~g~~~~~~~~l~~i~~~l~~----------~~~~~~~~~-~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~ 98 (293)
T 3u3w_A 31 QSEVSRIE-SGAVYPSMDILQGIAAKLQI----------PIIHFYEVL-IYSDIERKKQFKDQVIMLCKQKRYKEIYNKV 98 (293)
T ss_dssp HHHHHHHH-TTSCCCCHHHHHHHHHHHTC----------CTHHHHHTT-TSSCHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHH-CCCCCCCHHHHHHHHHHhCc----------CHHHHhCCC-CCCcchhHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34566665 54567887777777666531 111111111 12222 23334477888999999999999
Q ss_pred HhccCCCc---------ccHHHHHHHHHhCCChhhHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCChhhHHHHH
Q 048364 209 ELMEERNV---------ISWTALICGSAHRGYSEDALSLFEMMQATGVK-PN----EMTFTGVLTACVHTGLVDEGRKYF 274 (400)
Q Consensus 209 ~~~~~~~~---------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~ 274 (400)
++..+... ..+..+...+...|++++|+..+++....... ++ ..+++.+..+|...|++++|..++
T Consensus 99 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~ 178 (293)
T 3u3w_A 99 WNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLF 178 (293)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 98875211 12334667777888999999999999884322 22 236889999999999999999999
Q ss_pred HHhhhhc----CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhc-------cCCcc-HHHHHHHHHHHHhcCC-HHHHHH
Q 048364 275 KMIDEEY----DLEP-RIQHYGCMVDLFGKAGFLEEAYEVIRTM-------RLEPN-VIIWGSFLAACKEHKQ-FDMAER 340 (400)
Q Consensus 275 ~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-------~~~p~-~~~~~~l~~~~~~~~~-~~~a~~ 340 (400)
+++.+.. +..+ ...++..+...|.+.|++++|.+.+++. +..+. ..+|..+..+|...|+ +++|..
T Consensus 179 ~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~ 258 (293)
T 3u3w_A 179 EQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIED 258 (293)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 9888421 1112 2347888999999999999999999987 22222 5688899999999995 699999
Q ss_pred HHHHHH
Q 048364 341 VIKQAL 346 (400)
Q Consensus 341 ~~~~~~ 346 (400)
.++++.
T Consensus 259 ~~~~Al 264 (293)
T 3u3w_A 259 AYKKAS 264 (293)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998875
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.91 E-value=5.2e-08 Score=74.50 Aligned_cols=128 Identities=11% Similarity=0.015 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHH
Q 048364 252 MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAAC 329 (400)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~ 329 (400)
..+..+...+...|++++|...++...+. .+.+...+..+..++...|++++|.+.+++. ...| +...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 44666677778888888888888888753 2345677888888888999999999988887 4344 566788888899
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHH--hhcccchHHHHHHHHHHhc
Q 048364 330 KEHKQFDMAERVIKQALRMVKPENDGGVFTLICDL--YTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 330 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~m~~ 383 (400)
...|++++|...++++.+.. | .+...+..+..+ +...|++++|.+.+++...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-P-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-T-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999999988 7 666666444444 7788999999998887654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.90 E-value=1.2e-08 Score=76.66 Aligned_cols=95 Identities=18% Similarity=0.049 Sum_probs=58.4
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHH
Q 048364 287 IQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDL 364 (400)
Q Consensus 287 ~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 364 (400)
...+..+...+.+.|++++|...|++. ...| +...|..+..+|...|++++|+..|+++++.. | .++.++..++.+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P-~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-K-NDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-S-SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-C-CCcHHHHHHHHH
Confidence 344555556666666666666666665 3344 44556666666666666666666666666666 6 566666666666
Q ss_pred hhcccchHHHHHHHHHHhc
Q 048364 365 YTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 365 ~~~~g~~~~a~~~~~~m~~ 383 (400)
|...|++++|...|++..+
T Consensus 114 ~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.90 E-value=3.7e-08 Score=71.63 Aligned_cols=109 Identities=12% Similarity=0.043 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHH
Q 048364 252 MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAAC 329 (400)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~ 329 (400)
..+......+.+.|++++|++.|++..+. .+.+...|..+..+|.+.|++++|++.|++. .+.| +...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 44555666677777777777777777642 2335666777777777777777777777776 4444 455677777777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHH
Q 048364 330 KEHKQFDMAERVIKQALRMVKPENDGGVFTLICDL 364 (400)
Q Consensus 330 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 364 (400)
...|++++|...|+++++.. | .+..+...+..+
T Consensus 92 ~~~~~~~~A~~~~~~al~l~-P-~~~~a~~~l~~~ 124 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVD-P-SNEEAREGVRNC 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-T-TCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-c-CCHHHHHHHHHh
Confidence 77777777777777777777 6 666666555443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.90 E-value=4.8e-08 Score=83.30 Aligned_cols=187 Identities=11% Similarity=-0.049 Sum_probs=125.1
Q ss_pred HHHHHHHHhhcccchhhhhhhhhhhHHHhcccc-----chHHHHHHHHHHHHhcCCHHHHHHHHHhccC-----CC----
Q 048364 150 TIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE-----LNEQIATILVDMYAKCGFLKYALMVFELMEE-----RN---- 215 (400)
Q Consensus 150 ~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~---- 215 (400)
.|......+...|+++. |...+....+.... ....+++.+..+|...|++++|...|++..+ .+
T Consensus 38 ~~~~a~~~~~~~g~~~~--A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~ 115 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQ--AKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTA 115 (307)
T ss_dssp HHHHHHHHHHHTTCHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHHcCCHHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 57777778888888888 88887776654321 1245777888888888888888888877653 11
Q ss_pred cccHHHHHHHHHhCCChhhHHHHHHHHHHCCCC---C--CHHHHHHHHHHHHhcCChhhHHHHHHHhhhhc---CCCCC-
Q 048364 216 VISWTALICGSAHRGYSEDALSLFEMMQATGVK---P--NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEY---DLEPR- 286 (400)
Q Consensus 216 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~---p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~- 286 (400)
..+++.+...|.. |++++|+..|++..+.... + ...++..+...+.+.|++++|...|++..+.. +..+.
T Consensus 116 a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 194 (307)
T 2ifu_A 116 AMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTC 194 (307)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHH
Confidence 2456777778877 8999999888887653111 1 13567778888888899999998888877431 11111
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhccCCcc------HHHHHHHHHHHHhcCCHHHHHH
Q 048364 287 IQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPN------VIIWGSFLAACKEHKQFDMAER 340 (400)
Q Consensus 287 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~------~~~~~~l~~~~~~~~~~~~a~~ 340 (400)
...+..++.++...|++++|...|++.-..|+ ......++.++ ..|+.+.+..
T Consensus 195 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 195 YKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 23566667777788899999888887622332 12344455544 5566665555
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.84 E-value=8.2e-08 Score=69.29 Aligned_cols=114 Identities=19% Similarity=0.225 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHH
Q 048364 251 EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAA 328 (400)
Q Consensus 251 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~ 328 (400)
...+..+...+...|++++|.+.++++.+. .+.+...+..+...+...|++++|...++++ ...| +..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 456667777778888888888888887743 2345667777888888888888888888877 3333 56677788888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcc
Q 048364 329 CKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368 (400)
Q Consensus 329 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 368 (400)
+...|++++|...++++.+.. | .+...+..+..++...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-P-NNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-T-TCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-C-CcHHHHHHHHHHHHhc
Confidence 888888888888888888887 7 6677777776666543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.84 E-value=3.7e-08 Score=71.67 Aligned_cols=100 Identities=16% Similarity=0.154 Sum_probs=89.2
Q ss_pred CCCC-hhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHH
Q 048364 283 LEPR-IQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359 (400)
Q Consensus 283 ~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 359 (400)
+.|+ ...+......|.+.|++++|++.|++. ...| +...|..+..+|.+.|++++|+..++++++.+ | .+..+|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p-~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-S-KFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-TCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-h-hhhHHHH
Confidence 3443 356778899999999999999999998 5555 67789999999999999999999999999999 8 8899999
Q ss_pred HHHHHhhcccchHHHHHHHHHHhcc
Q 048364 360 LICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 360 ~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
.++.+|...|++++|.+.|++..+.
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999998763
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.83 E-value=2.1e-06 Score=72.24 Aligned_cols=158 Identities=11% Similarity=0.070 Sum_probs=99.3
Q ss_pred CCHHHHHHHHHhccCC---CcccHHHHHHHHHhCCChh--hHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC------h
Q 048364 199 GFLKYALMVFELMEER---NVISWTALICGSAHRGYSE--DALSLFEMMQATGVKPNEMTFTGVLTACVHTGL------V 267 (400)
Q Consensus 199 g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~--~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~------~ 267 (400)
++++++..+++++.+. +..+|+.-.-.+.+.|.++ ++++.++++.+.... |...|+.-...+...+. +
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhH
Confidence 5677777777777653 4445555555566667766 777777777776433 55666655555555555 6
Q ss_pred hhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHH-HHHHHHhc-cC----CccHHHHHHHHHHHHhcCCHHHHHHH
Q 048364 268 DEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEE-AYEVIRTM-RL----EPNVIIWGSFLAACKEHKQFDMAERV 341 (400)
Q Consensus 268 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~-~~----~p~~~~~~~l~~~~~~~~~~~~a~~~ 341 (400)
+++.+.++.+... -+-|...|+.+...+.+.|+... +..+..++ .. ..+...+..+..+|.+.|+.++|.++
T Consensus 203 ~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 203 DEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 7777777777642 23466677777777777666443 44555555 22 23556677777777777777788888
Q ss_pred HHHHHH-cCCCCCCchHHHHH
Q 048364 342 IKQALR-MVKPENDGGVFTLI 361 (400)
Q Consensus 342 ~~~~~~-~~~~~~~~~~~~~l 361 (400)
++.+.+ .+ | .....|...
T Consensus 281 ~~~l~~~~D-p-ir~~yW~~~ 299 (306)
T 3dra_A 281 YDLLKSKYN-P-IRSNFWDYQ 299 (306)
T ss_dssp HHHHHHTTC-G-GGHHHHHHH
T ss_pred HHHHHhccC-h-HHHHHHHHH
Confidence 877776 45 5 555555443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.82 E-value=9.7e-08 Score=69.88 Aligned_cols=116 Identities=14% Similarity=0.049 Sum_probs=82.1
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHH
Q 048364 250 NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLA 327 (400)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~ 327 (400)
+...+..+...+...|++++|...++...+ ..+.+...+..+..+|...|++++|.+.+++. ...| +...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 345666677777777777777777777763 22335666777777777788888888877776 3334 4567777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhccc
Q 048364 328 ACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNE 369 (400)
Q Consensus 328 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 369 (400)
++...|++++|...++++.+.. | .+...+..+..++...|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD-S-SCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-G-GGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-C-CchHHHHHHHHHHHHhc
Confidence 8888888888888888888777 6 56667777777666554
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=9.1e-08 Score=69.70 Aligned_cols=118 Identities=10% Similarity=0.009 Sum_probs=90.3
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHH
Q 048364 250 NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLA 327 (400)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~ 327 (400)
+...+..+...+...|++++|...++.+.+. .+.+...+..+..++...|++++|.+.+++. ...| +...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 3455666777777888888888888887743 2335667777888888888888888888877 3344 4667788888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccch
Q 048364 328 ACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKW 371 (400)
Q Consensus 328 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 371 (400)
.+...|++++|...++++.+.. | .+...+..+..++...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-P-DNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-T-TCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-c-cchHHHHHHHHHHHHHhcC
Confidence 8888899999999999988888 7 6778888888888777765
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.81 E-value=4.9e-08 Score=84.28 Aligned_cols=127 Identities=13% Similarity=0.027 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCC----------------hhhHHHHHHHHHhcCChHHHHHHHHhc-
Q 048364 251 EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR----------------IQHYGCMVDLFGKAGFLEEAYEVIRTM- 313 (400)
Q Consensus 251 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~- 313 (400)
...+..+...+.+.|++++|...|++..+. .|+ ...|..+..+|.+.|++++|...+++.
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSW---LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345666667777777777777777777643 222 478888999999999999999999988
Q ss_pred cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHH-HHHHHHHh
Q 048364 314 RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGA-ERVRKLML 382 (400)
Q Consensus 314 ~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 382 (400)
.+.| +...|..+..+|...|++++|...|+++++.. | .+..++..+..++...|++++| ...++.|.
T Consensus 224 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P-~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 224 ELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-P-NNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-S-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455 67788899999999999999999999999998 8 7889999999999999999988 44566554
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.9e-08 Score=75.48 Aligned_cols=96 Identities=7% Similarity=-0.063 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHH
Q 048364 252 MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAAC 329 (400)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~ 329 (400)
..+..+...+...|++++|...|+.+... -+.+...|..+..+|...|++++|...|++. .+.| +...+..+..+|
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 34445555566666666666666666532 1234555556666666666666666666665 3333 344555566666
Q ss_pred HhcCCHHHHHHHHHHHHHcC
Q 048364 330 KEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 330 ~~~~~~~~a~~~~~~~~~~~ 349 (400)
...|++++|...|+++++..
T Consensus 100 ~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHC
Confidence 66666666666666666655
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.78 E-value=3.1e-08 Score=83.25 Aligned_cols=192 Identities=7% Similarity=-0.100 Sum_probs=127.4
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048364 184 NEQIATILVDMYAKCGFLKYALMVFELMEE--R-NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTA 260 (400)
Q Consensus 184 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 260 (400)
+...+..+...+...|++++|...|++..+ | +...|..+..+|.+.|++++|+..+++..+.. +-+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 345667778888899999999999988765 3 56678888889999999999999999887763 2356778888888
Q ss_pred HHhcCChhhHHHHHHHhhhhcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHH
Q 048364 261 CVHTGLVDEGRKYFKMIDEEYDLEPR-IQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAE 339 (400)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 339 (400)
+...|++++|...|+...+.. |+ ...+...+....+..+...... .......++......+ ..+ ..|++++|.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~---p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~ 155 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLA---KEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAEREREL 155 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH---HHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC---ccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHHHHH
Confidence 999999999999998877431 21 1111112222221111111111 1112222333333333 222 368899999
Q ss_pred HHHHHHHHcCCCCCCchHHHHHHHHhhcc-cchHHHHHHHHHHhcc
Q 048364 340 RVIKQALRMVKPENDGGVFTLICDLYTMN-EKWEGAERVRKLMLNQ 384 (400)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 384 (400)
+.++++.+.. | .+......+...+.+. +.+++|.++|.+..+.
T Consensus 156 ~~~~~al~~~-p-~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGH-E-DDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTT-S-CHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccc-c-chhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999988887 7 6666666666666655 7788999999888763
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.78 E-value=9.3e-08 Score=75.84 Aligned_cols=153 Identities=13% Similarity=-0.002 Sum_probs=85.2
Q ss_pred hcCCHHHHHH---HHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChh
Q 048364 197 KCGFLKYALM---VFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQAT----GVKP-NEMTFTGVLTACVHTGLVD 268 (400)
Q Consensus 197 ~~g~~~~A~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~ 268 (400)
..|++++|.+ .+..-.......+..+...+...|++++|...+++.... +..| ....+..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566666666 333222123445666666667777777777777665541 1111 2345566666677777777
Q ss_pred hHHHHHHHhhhh---cCCCC--ChhhHHHHHHHHHhcCChHHHHHHHHhc-----c-CCcc--HHHHHHHHHHHHhcCCH
Q 048364 269 EGRKYFKMIDEE---YDLEP--RIQHYGCMVDLFGKAGFLEEAYEVIRTM-----R-LEPN--VIIWGSFLAACKEHKQF 335 (400)
Q Consensus 269 ~a~~~~~~~~~~---~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~-----~-~~p~--~~~~~~l~~~~~~~~~~ 335 (400)
+|...+++..+. .+..+ ....+..+...+...|++++|...+++. . -.|. ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 777777665532 11111 1234566666677777777777766665 1 0111 22345666667777777
Q ss_pred HHHHHHHHHHHHcC
Q 048364 336 DMAERVIKQALRMV 349 (400)
Q Consensus 336 ~~a~~~~~~~~~~~ 349 (400)
++|...+++..+..
T Consensus 164 ~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 164 LEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777666543
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.76 E-value=4.3e-06 Score=75.93 Aligned_cols=194 Identities=10% Similarity=-0.020 Sum_probs=114.2
Q ss_pred hHHHHHHHHHHHHhCcccchhhhhHHHHHHHhCCHHHHHHHHhhCCC--CChhhHHHHHHHHHcCCC-hHHHHHHHhhCC
Q 048364 32 LTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARKLFDELPE--RNAVTWNTMIKGYSKSGN-VCEARDFFERMP 108 (400)
Q Consensus 32 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~ 108 (400)
++.|..+|+.++. .+-.|+++.+..+|+.... |+...|...+....+.++ .+....+|+...
T Consensus 11 i~~aR~vyer~l~---------------~~P~~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al 75 (493)
T 2uy1_A 11 LSSPSAIMEHARR---------------LYMSKDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTL 75 (493)
T ss_dssp -CCHHHHHHHHHH---------------HHHTTCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHH
T ss_pred hHHHHHHHHHHHH---------------HCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 6666666666554 3322899999999999885 788899988888777663 345566666533
Q ss_pred ------CCChhhHHHHHHHHH----hcCCcchHHHHHHHHHhcCCCCCCH--HHHHHHHHHhhccc-------------c
Q 048364 109 ------LRNVASWSAMIAAYL----NAGAYDPGLKLFREMISNEGLTPDQ--MTIGAVLSGCSHLG-------------S 163 (400)
Q Consensus 109 ------~~~~~~~~~l~~~~~----~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~ll~~~~~~~-------------~ 163 (400)
..+...|...+..+. ..|+.+.+.++|+..+ . +++.. ..|......-...+ .
T Consensus 76 ~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL-~--~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~ 152 (493)
T 2uy1_A 76 GQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRAL-Q--TPMGSLSELWKDFENFELELNKITGKKIVGDTLPI 152 (493)
T ss_dssp HHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHH-T--SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHH-h--ChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHH
Confidence 235677777776543 3467889999999998 3 33221 22322222111111 1
Q ss_pred hhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhc--CC-----HHHHHHHHHhccC--C-CcccHHHHHHHHHhCCChh
Q 048364 164 VGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKC--GF-----LKYALMVFELMEE--R-NVISWTALICGSAHRGYSE 233 (400)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~-----~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~ 233 (400)
+.. +..++..+...-...+...|...+..-... |- .+.+..+|+++.. | ....|...+..+...|+.+
T Consensus 153 y~~--ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~ 230 (493)
T 2uy1_A 153 FQS--SFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKE 230 (493)
T ss_dssp HHH--HHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHH--HHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Confidence 111 222233222211111223454444432221 11 3446678887765 3 4556777788888999999
Q ss_pred hHHHHHHHHHHC
Q 048364 234 DALSLFEMMQAT 245 (400)
Q Consensus 234 ~a~~~~~~m~~~ 245 (400)
.|..+|++....
T Consensus 231 ~ar~i~erAi~~ 242 (493)
T 2uy1_A 231 KAKKVVERGIEM 242 (493)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 999999999887
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.75 E-value=2.8e-07 Score=69.12 Aligned_cols=98 Identities=7% Similarity=-0.035 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHH
Q 048364 251 EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAA 328 (400)
Q Consensus 251 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~ 328 (400)
...+..+...+.+.|++++|...|+.+.+. -+.+...|..+..+|...|++++|...|++. .+.| +...|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 356777788889999999999999999853 2446788899999999999999999999988 5556 45678889999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCC
Q 048364 329 CKEHKQFDMAERVIKQALRMVKP 351 (400)
Q Consensus 329 ~~~~~~~~~a~~~~~~~~~~~~~ 351 (400)
|...|++++|...|+++++.. |
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~-~ 135 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHS-N 135 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-C
T ss_pred HHHcCCHHHHHHHHHHHHHhC-C
Confidence 999999999999999999988 6
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.74 E-value=2.1e-07 Score=65.70 Aligned_cols=99 Identities=15% Similarity=0.113 Sum_probs=80.2
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--CchHHHHH
Q 048364 286 RIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEN--DGGVFTLI 361 (400)
Q Consensus 286 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l 361 (400)
+...+..+...+...|++++|...+++. ...| +...+..+...+...|++++|...++++.+.. | . +..++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~-~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-E-DEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-C-CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-c-ccchHHHHHHH
Confidence 4556777888888888888888888887 3333 56677888888888999999999999998887 7 6 78888888
Q ss_pred HHHhhcc-cchHHHHHHHHHHhcccc
Q 048364 362 CDLYTMN-EKWEGAERVRKLMLNQNV 386 (400)
Q Consensus 362 ~~~~~~~-g~~~~a~~~~~~m~~~~~ 386 (400)
+.++... |++++|.+.+++..+..-
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 8899999 999999999888876543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.5e-06 Score=71.84 Aligned_cols=192 Identities=11% Similarity=0.059 Sum_probs=143.3
Q ss_pred HHHHHHHHHhcC--CHHHHHHHHHhccCC---CcccHHHHHHHH----HhC---CChhhHHHHHHHHHHCCCCCCHHHHH
Q 048364 188 ATILVDMYAKCG--FLKYALMVFELMEER---NVISWTALICGS----AHR---GYSEDALSLFEMMQATGVKPNEMTFT 255 (400)
Q Consensus 188 ~~~l~~~~~~~g--~~~~A~~~~~~~~~~---~~~~~~~l~~~~----~~~---~~~~~a~~~~~~m~~~~~~p~~~~~~ 255 (400)
|+.-..++...| +++++++.++.+... +..+|+.-...+ ... +++++++.+++++.+... -+...|+
T Consensus 70 Wn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~p-kny~aW~ 148 (306)
T 3dra_A 70 WIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDP-KNHHVWS 148 (306)
T ss_dssp HHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred HHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCC-CCHHHHH
Confidence 343444444555 788888888887752 344555443333 444 789999999999998743 3778888
Q ss_pred HHHHHHHhcCChh--hHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCC------hHHHHHHHHhc-cCCc-cHHHHHHH
Q 048364 256 GVLTACVHTGLVD--EGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF------LEEAYEVIRTM-RLEP-NVIIWGSF 325 (400)
Q Consensus 256 ~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~a~~~~~~~-~~~p-~~~~~~~l 325 (400)
.-..++.+.|.++ ++.+.++.+.+. -+-+...|+.....+.+.+. ++++++.++++ ...| |...|+.+
T Consensus 149 ~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~ 226 (306)
T 3dra_A 149 YRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYL 226 (306)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHH
Confidence 7777888888888 999999999963 24467788877777777776 88999999887 4455 67788888
Q ss_pred HHHHHhcCCHH-HHHHHHHHHHHcC--CCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 326 LAACKEHKQFD-MAERVIKQALRMV--KPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 326 ~~~~~~~~~~~-~a~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
...+.+.|+.. .+..+++++.+.+ .| .++.++..++.+|.+.|+.++|.++++.+.+
T Consensus 227 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 227 LGIHERFDRSITQLEEFSLQFVDLEKDQV-TSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHTTCCGGGGHHHHHTTEEGGGTEE-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCChHHHHHHHHHHHhccCCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 88888888744 4556777766543 14 6788999999999999999999999999874
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.73 E-value=2e-06 Score=78.05 Aligned_cols=351 Identities=10% Similarity=0.007 Sum_probs=204.3
Q ss_pred CCCCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCC-HHHHHHHHhhCCC------CChhh
Q 048364 12 VPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTS-FGFARKLFDELPE------RNAVT 83 (400)
Q Consensus 12 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~-~~~a~~~~~~~~~------~~~~~ 83 (400)
+.--...|...+..+-. |+++.+.++|++.+.. .|+...|...+... +.++ .+....+|+.... .+...
T Consensus 11 i~~aR~vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~i 87 (493)
T 2uy1_A 11 LSSPSAIMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGL 87 (493)
T ss_dssp -CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHH
T ss_pred hHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHH
Confidence 34445667777777765 8899999999998873 47888999999988 6653 4556666666442 35677
Q ss_pred HHHHHHHHH----cCCChHHHHHHHhhCCC-C--Ch-hhHHHHHHHHH-------------hcCCcchHHHHHHHHHhcC
Q 048364 84 WNTMIKGYS----KSGNVCEARDFFERMPL-R--NV-ASWSAMIAAYL-------------NAGAYDPGLKLFREMISNE 142 (400)
Q Consensus 84 ~~~l~~~~~----~~~~~~~a~~~~~~~~~-~--~~-~~~~~l~~~~~-------------~~g~~~~a~~~~~~m~~~~ 142 (400)
|...+..+. .+++++.+.++|++... | +. ..|......-. ..+.+..|..+++.+....
T Consensus 88 W~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~ 167 (493)
T 2uy1_A 88 YKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLI 167 (493)
T ss_dssp HHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 888887654 34678889999988742 2 11 12221111000 1122334444444443100
Q ss_pred CCCCCHHHHHHHHHHhhccc----c---hhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCC
Q 048364 143 GLTPDQMTIGAVLSGCSHLG----S---VGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERN 215 (400)
Q Consensus 143 ~~~p~~~~~~~ll~~~~~~~----~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 215 (400)
-..+...|...+.--...+ + .+. +..+++.+.... +.+..+|...+..+.+.|+.+.|..+|++....
T Consensus 168 -~~~s~~~W~~y~~~E~~~~~~~~~~~~~~R--v~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~- 242 (493)
T 2uy1_A 168 -RGWSVKNAARLIDLEMENGMKLGGRPHESR--MHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM- 242 (493)
T ss_dssp -HTCSHHHHHHHHHHHHTCTTCCCHHHHHHH--HHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred -hhccHHHHHHHHHHHhcCCccCcchhhHHH--HHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-
Confidence 0012223433333221110 0 122 455677666643 345777888888888999999999999877653
Q ss_pred cccHHHHHHHHHhCCChhhHHHHHHHHHHCC---------CCC---CHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCC
Q 048364 216 VISWTALICGSAHRGYSEDALSLFEMMQATG---------VKP---NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDL 283 (400)
Q Consensus 216 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---------~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 283 (400)
+.....-+ .|....+.++. ++.+.+.- ..+ ....|...+....+.++.+.|..+|+.+ +..
T Consensus 243 P~~~~l~~-~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-- 315 (493)
T 2uy1_A 243 SDGMFLSL-YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-- 315 (493)
T ss_dssp CCSSHHHH-HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS--
T ss_pred CCcHHHHH-HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC--
Confidence 22211111 22222222222 22222210 011 1234555666666678899999999988 321
Q ss_pred CCChhhHHHHHHHHHh-cCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHH
Q 048364 284 EPRIQHYGCMVDLFGK-AGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360 (400)
Q Consensus 284 ~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 360 (400)
..+...|...+..-.. .++.+.|..+|+.. ..-| +...+...+......|+.+.|..+|+++ + .....+..
T Consensus 316 ~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~-----~-k~~~lw~~ 389 (493)
T 2uy1_A 316 GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL-----E-KTSRMWDS 389 (493)
T ss_dssp CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS-----C-CBHHHHHH
T ss_pred CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-----H-HHHHHHHH
Confidence 2234444433332222 33699999999887 2123 2344566677777889999999999987 2 35667777
Q ss_pred HHHHhhcccchHHHHHHHHHHhc
Q 048364 361 ICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 361 l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
.+..-...|+.+.+..+++++.+
T Consensus 390 ~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 390 MIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777778999999888888774
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.72 E-value=7.8e-08 Score=74.60 Aligned_cols=126 Identities=7% Similarity=0.037 Sum_probs=97.1
Q ss_pred HHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHH-HHhcCCh-
Q 048364 226 SAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDL-FGKAGFL- 303 (400)
Q Consensus 226 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~- 303 (400)
+...|++++|+..+++..... +.+...+..+..++...|++++|...|+.+.+.. +.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcc
Confidence 356788999999999887763 3366788888899999999999999999888532 3456677788888 7788998
Q ss_pred -HHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCch
Q 048364 304 -EEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGG 356 (400)
Q Consensus 304 -~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 356 (400)
++|...+++. ...| +...+..+...+...|++++|...++++.+.. | .+..
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p-~~~~ 150 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN-S-PRIN 150 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-C-TTSC
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC-C-CCcc
Confidence 9999999988 4445 46678888889999999999999999999988 7 4443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.71 E-value=5.3e-07 Score=74.25 Aligned_cols=183 Identities=9% Similarity=-0.014 Sum_probs=121.4
Q ss_pred hcCCHHHHHHHHHhccCC---CcccHHHH-------HHHHHhCCChhhHHHHHHHHHHCCCCCCH---------------
Q 048364 197 KCGFLKYALMVFELMEER---NVISWTAL-------ICGSAHRGYSEDALSLFEMMQATGVKPNE--------------- 251 (400)
Q Consensus 197 ~~g~~~~A~~~~~~~~~~---~~~~~~~l-------~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--------------- 251 (400)
..++...|.+.|.+...- ....|..+ ...+...++..+++..+..-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 578888888888888763 23456555 3445555555555555544333 22221
Q ss_pred -------HHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhccCCcc----HH
Q 048364 252 -------MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPN----VI 320 (400)
Q Consensus 252 -------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~----~~ 320 (400)
.....+...+...|++++|.+.|+.+... .|+......+...+.+.+++++|+..|+.....|+ ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 12334556677888888888888887732 34333555666678888888888888887733332 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCCchHHHHHHHHhhcccchHHHHHHHHHHhcc
Q 048364 321 IWGSFLAACKEHKQFDMAERVIKQALRMVK-PENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 321 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
.+..+..++...|++++|+..|++...... |.-..........++.+.|+.++|...|+++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 566677888888888888888888875432 2114456777888888888888888888888764
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.71 E-value=2.7e-07 Score=76.01 Aligned_cols=205 Identities=9% Similarity=-0.025 Sum_probs=104.1
Q ss_pred cCCChHHHHHHHhhCC--CC-ChhhHHHH-------HHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhc-c
Q 048364 93 KSGNVCEARDFFERMP--LR-NVASWSAM-------IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSH-L 161 (400)
Q Consensus 93 ~~~~~~~a~~~~~~~~--~~-~~~~~~~l-------~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~-~ 161 (400)
..++.+.|.+.|.+.. .| ....|+.+ ...+.+.++..+++..+..-. ++.|+... +... .
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l---~l~p~~l~------a~~~~~ 88 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSV---QISMSTLN------ARIAIG 88 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTT---TCCGGGGC------CEEECC
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHh---cCChhhhh------hhhccC
Confidence 4677777777777765 22 44566666 345555555555555554443 44444211 0000 1
Q ss_pred cchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC--CCcccHHHHHHHHHhCCChhhHHHHH
Q 048364 162 GSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE--RNVISWTALICGSAHRGYSEDALSLF 239 (400)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~ 239 (400)
|-+.. +...+..-..+...+...+...|++++|.++|..+.. |+......+...+.+.+++++|+..|
T Consensus 89 g~y~~----------~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l 158 (282)
T 4f3v_A 89 GLYGD----------ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQV 158 (282)
T ss_dssp TTTCC----------CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred Ccccc----------cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 10000 0001111233445566777788888888888887764 32224444445666667777777766
Q ss_pred HHHHHCCCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHhc-c
Q 048364 240 EMMQATGVKPN--EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR--IQHYGCMVDLFGKAGFLEEAYEVIRTM-R 314 (400)
Q Consensus 240 ~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~-~ 314 (400)
+...... .|. ...+..+..++...|++++|+..|++.... ...|. .........++.+.|+.++|...|+++ .
T Consensus 159 ~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g-~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 159 KSAGKWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDS-PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp TTGGGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC-CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5433221 110 124455555666666666666666666521 11132 223344455555556666666655555 3
Q ss_pred CCcc
Q 048364 315 LEPN 318 (400)
Q Consensus 315 ~~p~ 318 (400)
..|+
T Consensus 237 ~~P~ 240 (282)
T 4f3v_A 237 THPE 240 (282)
T ss_dssp HSCC
T ss_pred cCCc
Confidence 3444
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.70 E-value=5.3e-07 Score=71.41 Aligned_cols=157 Identities=11% Similarity=-0.040 Sum_probs=116.1
Q ss_pred HhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhc---CCCC-ChhhHHHHHHHHHhcCC
Q 048364 227 AHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEY---DLEP-RIQHYGCMVDLFGKAGF 302 (400)
Q Consensus 227 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~ 302 (400)
...|++++|.++++.+... .......+..+...+...|++++|...+++..+.. +..+ ...++..+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4679999999966555432 22356788888999999999999999999877521 1222 34568888999999999
Q ss_pred hHHHHHHHHhc-c----C--Cc--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCCCchHHHHHHHHhhccc
Q 048364 303 LEEAYEVIRTM-R----L--EP--NVIIWGSFLAACKEHKQFDMAERVIKQALRMVK----PENDGGVFTLICDLYTMNE 369 (400)
Q Consensus 303 ~~~a~~~~~~~-~----~--~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g 369 (400)
+++|.+.+++. . . .| ....+..+...+...|++++|...+++..+... +.....++..+..++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99999999887 1 1 22 234678888999999999999999999886431 1111334678899999999
Q ss_pred chHHHHHHHHHHhcc
Q 048364 370 KWEGAERVRKLMLNQ 384 (400)
Q Consensus 370 ~~~~a~~~~~~m~~~ 384 (400)
++++|.+.+++..+.
T Consensus 162 ~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 162 NLLEAQQHWLRARDI 176 (203)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999888753
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.69 E-value=6.3e-07 Score=68.36 Aligned_cols=127 Identities=12% Similarity=-0.033 Sum_probs=81.8
Q ss_pred cHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHH
Q 048364 218 SWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297 (400)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 297 (400)
.+..+...+...|++++|...|++..... +.+...+..+..++...|++++|...+++..+. .+.+...+..+..++
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence 34455566666677777777777666542 224566667777777777777777777777743 233556677777777
Q ss_pred HhcCChHHHHHHHHhc-cCCc-cHHHH--HHHHHHHHhcCCHHHHHHHHHHHHH
Q 048364 298 GKAGFLEEAYEVIRTM-RLEP-NVIIW--GSFLAACKEHKQFDMAERVIKQALR 347 (400)
Q Consensus 298 ~~~g~~~~a~~~~~~~-~~~p-~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (400)
...|++++|...|++. ...| +...+ ...+..+...|++++|...+++...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 7888888888877776 3333 33333 3333346677788888877776654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.69 E-value=1.2e-07 Score=70.49 Aligned_cols=94 Identities=12% Similarity=-0.026 Sum_probs=47.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHh
Q 048364 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKE 331 (400)
Q Consensus 254 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~ 331 (400)
+..+...+.+.|++++|...|+.+... -+.+...|..+..+|...|++++|...|++. ...| +...+..+..+|..
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 333444455555555555555555532 1223444555555555555555555555554 2223 23344445555555
Q ss_pred cCCHHHHHHHHHHHHHcC
Q 048364 332 HKQFDMAERVIKQALRMV 349 (400)
Q Consensus 332 ~~~~~~a~~~~~~~~~~~ 349 (400)
.|++++|...++++++..
T Consensus 99 ~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 99 LGDLDGAESGFYSARALA 116 (142)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 555555555555555554
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.67 E-value=5.1e-07 Score=71.41 Aligned_cols=96 Identities=10% Similarity=-0.002 Sum_probs=71.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHh
Q 048364 288 QHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLY 365 (400)
Q Consensus 288 ~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 365 (400)
..+..+..+|...|++++|...+++. ...| +...+..+..+|...|++++|...|+++++.. | .+..++..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p-~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-P-NNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-T-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-C-CcHHHHHHHHHHH
Confidence 56777888888999999999998887 4444 56788888899999999999999999999998 8 7888899999999
Q ss_pred hcccchHHHH-HHHHHHhccc
Q 048364 366 TMNEKWEGAE-RVRKLMLNQN 385 (400)
Q Consensus 366 ~~~g~~~~a~-~~~~~m~~~~ 385 (400)
...|+.+++. ..+..|...+
T Consensus 167 ~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 8888888877 5566555433
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.66 E-value=2.3e-07 Score=67.37 Aligned_cols=93 Identities=12% Similarity=-0.011 Sum_probs=54.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhh
Q 048364 289 HYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYT 366 (400)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 366 (400)
.+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++++.. | .++.++..++.++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p-~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-P-NFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-C-CcHHHHHHHHHHHH
Confidence 3444555555666666666666555 3233 34555555666666666666666666666665 5 55566666666666
Q ss_pred cccchHHHHHHHHHHhc
Q 048364 367 MNEKWEGAERVRKLMLN 383 (400)
Q Consensus 367 ~~g~~~~a~~~~~~m~~ 383 (400)
..|++++|...+++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 66666666666665554
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=9.3e-08 Score=71.73 Aligned_cols=96 Identities=14% Similarity=0.050 Sum_probs=67.0
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHH
Q 048364 286 RIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICD 363 (400)
Q Consensus 286 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 363 (400)
+...+..+...+...|++++|...|++. ...| +...|..+..+|...|++++|...++++++.. | .++.++..++.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p-~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-I-XEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T-TCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-C-CCchHHHHHHH
Confidence 3445566666777777777777777766 3344 55566667777777777777777777777777 6 66777777777
Q ss_pred HhhcccchHHHHHHHHHHhc
Q 048364 364 LYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 364 ~~~~~g~~~~a~~~~~~m~~ 383 (400)
+|...|++++|...|++..+
T Consensus 98 ~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777776665
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.65 E-value=2.5e-07 Score=66.63 Aligned_cols=94 Identities=18% Similarity=0.047 Sum_probs=80.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhh
Q 048364 289 HYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYT 366 (400)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 366 (400)
.+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++.. | .+..++..++.+|.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P-~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-P-KDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-TCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHH
Confidence 4556777888999999999999988 4455 66788888889999999999999999999998 8 78889999999999
Q ss_pred cccchHHHHHHHHHHhcc
Q 048364 367 MNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 367 ~~g~~~~a~~~~~~m~~~ 384 (400)
..|++++|...+++..+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999888763
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.65 E-value=9.1e-07 Score=62.90 Aligned_cols=108 Identities=16% Similarity=0.114 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHH
Q 048364 252 MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAAC 329 (400)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~ 329 (400)
..+..+...+...|++++|...++..... .+.+...+..+..++...|++++|...+++. ...| +...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34555555666666666666666666532 1234555666666666666666666666665 3333 355566666666
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHH
Q 048364 330 KEHKQFDMAERVIKQALRMVKPENDGGVFTLICD 363 (400)
Q Consensus 330 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 363 (400)
...|++++|...+++..+.. | .++..+..+..
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~-~-~~~~~~~~l~~ 114 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE-A-NNPQLKEGLQN 114 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-T-TCHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcC-C-CCHHHHHHHHH
Confidence 67777777777777776666 5 45555544443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.64 E-value=3.4e-07 Score=70.91 Aligned_cols=115 Identities=10% Similarity=0.092 Sum_probs=48.3
Q ss_pred cCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHH-HHhcCCH--HHH
Q 048364 264 TGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAA-CKEHKQF--DMA 338 (400)
Q Consensus 264 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~-~~~~~~~--~~a 338 (400)
.|++++|...++...+. .+.+...+..+..+|...|++++|...|++. ...| +...+..+..+ +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 34444444444444421 1223344444444444444444444444444 1112 23333344444 3344444 444
Q ss_pred HHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHh
Q 048364 339 ERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLML 382 (400)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 382 (400)
...++++++.. | .+..++..++.+|...|++++|...+++..
T Consensus 101 ~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al 142 (177)
T 2e2e_A 101 RAMIDKALALD-S-NEITALMLLASDAFMQANYAQAIELWQKVM 142 (177)
T ss_dssp HHHHHHHHHHC-T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-C-CcHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 44444444444 4 344444444444444444444444444443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.8e-07 Score=68.14 Aligned_cols=95 Identities=8% Similarity=0.042 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCcc--------HHHHH
Q 048364 253 TFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPN--------VIIWG 323 (400)
Q Consensus 253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~--------~~~~~ 323 (400)
.+..+...+.+.|++++|+..|++..+- .+.+...|..+..+|...|++++|++.+++. .+.|+ ..+|.
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 4445555566666666666666665532 1223455555666666666666666666554 22221 12444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 324 SFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 324 ~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
.+..++...|++++|+..|++.++..
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 55555555666666666666655544
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.61 E-value=5.8e-07 Score=66.17 Aligned_cols=98 Identities=12% Similarity=-0.040 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHH
Q 048364 250 NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLA 327 (400)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~ 327 (400)
+...+..+...+...|++++|...|+...+. .+.+...+..+..++...|++++|...+++. ...| +...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 4556666666666667777777776666642 1234556666666666666666666666665 3333 3455666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC
Q 048364 328 ACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 328 ~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
++...|++++|...++++.+..
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHC
Confidence 6666666666666666666655
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.61 E-value=4.3e-07 Score=66.32 Aligned_cols=98 Identities=11% Similarity=0.063 Sum_probs=88.3
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHH
Q 048364 285 PRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLIC 362 (400)
Q Consensus 285 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 362 (400)
.+...+..+...+...|++++|...|++. ...| +...+..+..++...|++++|...++++.+.. | .+..++..++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~-~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-P-TFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-T-TCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-C-CchHHHHHHH
Confidence 35667888999999999999999999998 5555 67788999999999999999999999999998 8 7889999999
Q ss_pred HHhhcccchHHHHHHHHHHhcc
Q 048364 363 DLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 363 ~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
.++...|++++|.+.+++..+.
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHh
Confidence 9999999999999999998764
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.61 E-value=2.7e-07 Score=70.56 Aligned_cols=108 Identities=10% Similarity=0.041 Sum_probs=91.4
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHH
Q 048364 250 NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLA 327 (400)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~ 327 (400)
+...+..+...+.+.|++++|...|++..+. .+.+...|..+..+|.+.|++++|+..|++. .+.| +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4567888888999999999999999999853 2346788999999999999999999999998 5555 5778899999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHH
Q 048364 328 ACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361 (400)
Q Consensus 328 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 361 (400)
+|...|++++|...|+++++.. | .+...+...
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~-p-~~~~~~~~~ 119 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAE-G-NGGSDAMKR 119 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH-S-SSCCHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC-C-CchHHHHHH
Confidence 9999999999999999999998 7 666644433
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.61 E-value=4.3e-07 Score=67.50 Aligned_cols=96 Identities=11% Similarity=-0.008 Sum_probs=64.9
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHH
Q 048364 287 IQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDL 364 (400)
Q Consensus 287 ~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 364 (400)
...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++++.. | .++..+..++.+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p-~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-I-NEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-TCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-C-CCcHHHHHHHHH
Confidence 344555666667777777777777766 3344 45566666677777777777777777777776 6 666777777777
Q ss_pred hhcccchHHHHHHHHHHhcc
Q 048364 365 YTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 365 ~~~~g~~~~a~~~~~~m~~~ 384 (400)
|...|++++|...+++..+.
T Consensus 96 ~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 77777777777777766543
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.60 E-value=6.3e-07 Score=64.48 Aligned_cols=96 Identities=20% Similarity=0.283 Sum_probs=86.2
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHH
Q 048364 287 IQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDL 364 (400)
Q Consensus 287 ~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 364 (400)
...+..+...+...|++++|.+.++++ ...| +..++..+...+...|++++|...++++.+.. | .+..++..++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~-~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-P-NNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-C-ccHHHHHHHHHH
Confidence 567888899999999999999999998 3334 67788899999999999999999999999998 7 788999999999
Q ss_pred hhcccchHHHHHHHHHHhcc
Q 048364 365 YTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 365 ~~~~g~~~~a~~~~~~m~~~ 384 (400)
|...|++++|...++++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 99999999999999998764
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.59 E-value=2.1e-06 Score=63.95 Aligned_cols=111 Identities=8% Similarity=-0.053 Sum_probs=69.9
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCC----hhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHH
Q 048364 250 NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR----IQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWG 323 (400)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~ 323 (400)
+...+..+...+...|++++|...|+...+ ..|+ ...+..+..+|...|++++|...+++. ...| +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 345555566666666666666666666662 2343 455666666777777777777777666 3334 455666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHh
Q 048364 324 SFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLY 365 (400)
Q Consensus 324 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 365 (400)
.+..++...|++++|...+++..+.. | .+..++..+....
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~-p-~~~~~~~~l~~~~ 143 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLE-P-KNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-S-SCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-C-CcHHHHHHHHHHH
Confidence 66777777777777777777777776 6 5555555544443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.58 E-value=7.7e-07 Score=67.95 Aligned_cols=95 Identities=8% Similarity=-0.052 Sum_probs=75.9
Q ss_pred cccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHH
Q 048364 216 VISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295 (400)
Q Consensus 216 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 295 (400)
...+..+...+...|++++|+..|++..+.. +-+...+..+..++...|++++|...+++..+. .+.+...|..+..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 4567777888888899999999998888763 226677888888888889999999988888853 2335677888888
Q ss_pred HHHhcCChHHHHHHHHhc
Q 048364 296 LFGKAGFLEEAYEVIRTM 313 (400)
Q Consensus 296 ~~~~~g~~~~a~~~~~~~ 313 (400)
+|...|++++|.+.|++.
T Consensus 88 ~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHH
Confidence 888899999999888887
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.3e-06 Score=78.32 Aligned_cols=192 Identities=8% Similarity=-0.122 Sum_probs=129.7
Q ss_pred HHHHHhcCCHHHHHHHHHhccCCC-----c---------------ccHHHHHHHHHhCCChhhHHHHHHHHHHCC-CCCC
Q 048364 192 VDMYAKCGFLKYALMVFELMEERN-----V---------------ISWTALICGSAHRGYSEDALSLFEMMQATG-VKPN 250 (400)
Q Consensus 192 ~~~~~~~g~~~~A~~~~~~~~~~~-----~---------------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~ 250 (400)
...+.+.|++++|.+.|..+.+.+ . .++..++..|...|++++|.+.+.++...- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 344667788888888887776411 0 126677888889999999998888775531 1122
Q ss_pred HH----HHHHHHHHHHhcCChhhHHHHHHHhhhh---cCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhc-------cC
Q 048364 251 EM----TFTGVLTACVHTGLVDEGRKYFKMIDEE---YDLEP-RIQHYGCMVDLFGKAGFLEEAYEVIRTM-------RL 315 (400)
Q Consensus 251 ~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-------~~ 315 (400)
.. ..+.+-..+...|+.+.|..+++..... .+..+ -..++..+...|...|++++|..++++. +-
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 21 2222333344567888888888766532 12222 2456778888999999999999988876 11
Q ss_pred Cc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCC---CchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 316 EP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVK--PEN---DGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 316 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
.| ...++..++..|...|++++|..++++...... +.+ ....+..++..+...|++++|...+.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 22 345788888999999999999999988876431 211 134566777788888999999887776654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.58 E-value=7.9e-07 Score=63.22 Aligned_cols=97 Identities=14% Similarity=0.202 Sum_probs=86.6
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHH
Q 048364 286 RIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICD 363 (400)
Q Consensus 286 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 363 (400)
....+..+...+...|++++|...+++. ...| +...+..+...+...|++++|...++++.+.. | .+...+..++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~-~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-P-DWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-T-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-c-ccHHHHHHHHH
Confidence 3456778889999999999999999998 4444 67788889999999999999999999999998 8 78899999999
Q ss_pred HhhcccchHHHHHHHHHHhcc
Q 048364 364 LYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 364 ~~~~~g~~~~a~~~~~~m~~~ 384 (400)
++...|++++|.+.+++..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhhHHHHHHHHHHHHHc
Confidence 999999999999999998764
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.57 E-value=9.4e-07 Score=65.89 Aligned_cols=98 Identities=11% Similarity=0.025 Sum_probs=88.4
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCcc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHH
Q 048364 285 PRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPN----VIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359 (400)
Q Consensus 285 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 359 (400)
.+...+..+...+...|++++|.+.|++. ...|+ ...+..+..+|...|++++|...+++..+.. | .+...+.
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~-~~~~~~~ 103 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-G-GDVKALY 103 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-S-CCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-c-cCHHHHH
Confidence 35667888899999999999999999998 66776 6788889999999999999999999999998 8 7889999
Q ss_pred HHHHHhhcccchHHHHHHHHHHhcc
Q 048364 360 LICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 360 ~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
.+..+|...|++++|...+++..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 9999999999999999999998764
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.56 E-value=1.1e-06 Score=75.85 Aligned_cols=94 Identities=6% Similarity=-0.059 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHH
Q 048364 252 MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAAC 329 (400)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~ 329 (400)
..|..+..++.+.|++++|...++++.+. .+.+...+..+..+|...|++++|...|++. .+.| +...+..+..++
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 45666666677777777777777776642 2335566667777777777777777777766 4444 445666666777
Q ss_pred HhcCCHHHH-HHHHHHHHH
Q 048364 330 KEHKQFDMA-ERVIKQALR 347 (400)
Q Consensus 330 ~~~~~~~~a-~~~~~~~~~ 347 (400)
...|+.++| ...++.|..
T Consensus 275 ~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 275 QRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 777777766 345555543
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.54 E-value=1e-06 Score=63.96 Aligned_cols=94 Identities=15% Similarity=0.093 Sum_probs=49.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC------chHHHH
Q 048364 289 HYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEND------GGVFTL 360 (400)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~ 360 (400)
.+..+...+.+.|++++|++.|++. .+.| +...|..+..+|...|++++|+..++++++.. |... ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVG-RETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhC-cccchhhHHHHHHHHH
Confidence 3444555555555566555555555 3333 34455555555555555666555555555544 3111 124455
Q ss_pred HHHHhhcccchHHHHHHHHHHhc
Q 048364 361 ICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 361 l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
++.++...|++++|++.|++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 55555555555555555555443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=1.7e-06 Score=62.77 Aligned_cols=93 Identities=12% Similarity=0.003 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048364 185 EQIATILVDMYAKCGFLKYALMVFELMEE---RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTAC 261 (400)
Q Consensus 185 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 261 (400)
...+..+...+...|++++|...|++..+ .+...+..+...+...|++++|...+++..... +.+...+..+..++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 34444445555555555555555544432 123334444444444444444444444444331 11233444444444
Q ss_pred HhcCChhhHHHHHHHhh
Q 048364 262 VHTGLVDEGRKYFKMID 278 (400)
Q Consensus 262 ~~~~~~~~a~~~~~~~~ 278 (400)
...|++++|...++...
T Consensus 91 ~~~~~~~~A~~~~~~~~ 107 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKAL 107 (131)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHH
Confidence 44444444444444444
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.52 E-value=1.2e-06 Score=63.62 Aligned_cols=110 Identities=7% Similarity=0.010 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc----c----HHHH
Q 048364 252 MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP----N----VIIW 322 (400)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p----~----~~~~ 322 (400)
..+..+...+...|++++|...++...+. .+.+...+..+..+|...|++++|...+++. ...| + ..++
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 34555666666777777777777776642 2334556666777777777777777777766 2222 1 5567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhh
Q 048364 323 GSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYT 366 (400)
Q Consensus 323 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 366 (400)
..+..++...|++++|...++++.+.. | ++.....+..+..
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~-~--~~~~~~~l~~~~~ 123 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEH-R--TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-C--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-C--CHHHHHHHHHHHH
Confidence 777777888888888888888888776 4 4555555544443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.52 E-value=1.7e-06 Score=63.57 Aligned_cols=96 Identities=10% Similarity=-0.039 Sum_probs=60.0
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHH
Q 048364 286 RIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICD 363 (400)
Q Consensus 286 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 363 (400)
+...+..+...+...|++++|...|++. ...| +...|..+..++...|++++|...++++++.. | .++.++..++.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p-~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-G-QSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-c-hhHHHHHHHHH
Confidence 4455666666666666666666666665 3333 34556666666666666666666666666666 5 55666666666
Q ss_pred HhhcccchHHHHHHHHHHhc
Q 048364 364 LYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 364 ~~~~~g~~~~a~~~~~~m~~ 383 (400)
+|...|++++|...+++..+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 66666666666666666654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=2e-07 Score=73.80 Aligned_cols=128 Identities=12% Similarity=-0.024 Sum_probs=72.9
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHHCCCC-C--------------CHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCC
Q 048364 219 WTALICGSAHRGYSEDALSLFEMMQATGVK-P--------------NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDL 283 (400)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p--------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 283 (400)
+..+...+...|++++|+..|++....... | ....+..+..++...|++++|...++...+. .
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~ 118 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI--D 118 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--S
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--C
Confidence 344444555555555555555555443111 1 0256666777777788888888888777743 2
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHc
Q 048364 284 EPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAE-RVIKQALRM 348 (400)
Q Consensus 284 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~ 348 (400)
+.+...+..+..+|...|++++|.+.|++. .+.| +...+..+..++...++.+++. ..+..+...
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345667777777888888888888888776 4444 4456666666666666666555 444444433
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.3e-06 Score=63.28 Aligned_cols=95 Identities=12% Similarity=-0.039 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHH
Q 048364 253 TFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACK 330 (400)
Q Consensus 253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~ 330 (400)
.+......+.+.|++++|...|++..+. .+.+...|..+..+|.+.|++++|...+++. .+.| +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3444555555666666666666665532 1234455666666666666666666666665 3333 3445566666666
Q ss_pred hcCCHHHHHHHHHHHHHcC
Q 048364 331 EHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 331 ~~~~~~~a~~~~~~~~~~~ 349 (400)
..|++++|...++++.+..
T Consensus 84 ~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 84 AVKEYASALETLDAARTKD 102 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhC
Confidence 6666666666666666554
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.50 E-value=3.7e-06 Score=75.24 Aligned_cols=207 Identities=8% Similarity=-0.034 Sum_probs=130.1
Q ss_pred HHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhc
Q 048364 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKC 198 (400)
Q Consensus 119 ~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 198 (400)
.+.+.+.|++++|++.|.++.+...-..+... ..+.... .. ......+..++..|...
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~---------~~~~~~~--~~-----------~~~~~al~~l~~~y~~~ 68 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAA---------GASVDDK--RR-----------NEQETSILELGQLYVTM 68 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSS---------SSSBCSH--HH-----------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHH---------HHHHHHH--Hh-----------hhHHHHHHHHHHHHHHC
Confidence 45677889999999999998843322222100 0000000 00 00122355677888888
Q ss_pred CCHHHHHHHHHhccC-----CCc----ccHHHHHHHHHhCCChhhHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhc
Q 048364 199 GFLKYALMVFELMEE-----RNV----ISWTALICGSAHRGYSEDALSLFEMMQA----TGVKPN-EMTFTGVLTACVHT 264 (400)
Q Consensus 199 g~~~~A~~~~~~~~~-----~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~----~~~~p~-~~~~~~l~~~~~~~ 264 (400)
|++++|.+.+..+.+ ++. ...+.+...+...|+++.|..++++... .+..+. ..++..+...+...
T Consensus 69 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 148 (434)
T 4b4t_Q 69 GAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQK 148 (434)
T ss_dssp TCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHc
Confidence 888888888877654 111 1233333444556788888888877653 233333 35667788888888
Q ss_pred CChhhHHHHHHHhhhhcCCCC----ChhhHHHHHHHHHhcCChHHHHHHHHhc-------cCCcc--HHHHHHHHHHHHh
Q 048364 265 GLVDEGRKYFKMIDEEYDLEP----RIQHYGCMVDLFGKAGFLEEAYEVIRTM-------RLEPN--VIIWGSFLAACKE 331 (400)
Q Consensus 265 ~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~-------~~~p~--~~~~~~l~~~~~~ 331 (400)
|++++|..+++.+........ ...++..++..|...|++++|..++++. +..|. ...+..+...+..
T Consensus 149 g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~ 228 (434)
T 4b4t_Q 149 KQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCE 228 (434)
T ss_dssp TCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS
T ss_pred cChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Confidence 899888888887764322111 2356777888888889998888888776 11122 2456666777778
Q ss_pred cCCHHHHHHHHHHHHH
Q 048364 332 HKQFDMAERVIKQALR 347 (400)
Q Consensus 332 ~~~~~~a~~~~~~~~~ 347 (400)
.|++++|...+.+..+
T Consensus 229 ~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 229 DKDYKTAFSYFFESFE 244 (434)
T ss_dssp SSCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHH
Confidence 8888888888877765
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.49 E-value=8.9e-07 Score=64.36 Aligned_cols=101 Identities=12% Similarity=0.055 Sum_probs=71.3
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhhhcCCCCCh---hhHHHHHHHHHhcCChHHHHHHHHhc-cCCcc----HHHHHHHH
Q 048364 255 TGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRI---QHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPN----VIIWGSFL 326 (400)
Q Consensus 255 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~----~~~~~~l~ 326 (400)
..+...+...|++++|...|+.+.+.. +.+. ..+..+..++...|++++|...|++. ...|+ ...+..+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 345566777888888888888887532 2222 46667778888888888888888877 33443 45677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHH
Q 048364 327 AACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359 (400)
Q Consensus 327 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 359 (400)
.++...|++++|...++++++.. | .++....
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~-p-~~~~~~~ 114 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQY-P-GSDAARV 114 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-T-TSHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-C-CChHHHH
Confidence 78888888888888888888877 6 4444433
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=7.1e-05 Score=63.79 Aligned_cols=145 Identities=10% Similarity=-0.004 Sum_probs=74.6
Q ss_pred CHHHHHHHHHhccCCCc---ccHHHHHHHHHhCCChh--------hHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--
Q 048364 200 FLKYALMVFELMEERNV---ISWTALICGSAHRGYSE--------DALSLFEMMQATGVKPNEMTFTGVLTACVHTGL-- 266 (400)
Q Consensus 200 ~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~--------~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-- 266 (400)
+++++.++++++.+.++ .+|+.-.-.+.+.|.++ ++++.++++.+.... |...|+.....+.+.++
T Consensus 140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCC
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccc
Confidence 55667777777666433 33333333333333344 677777777665432 55666666655555554
Q ss_pred -----hhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCCh--------------------HHHHHHHHhc-cC-----
Q 048364 267 -----VDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFL--------------------EEAYEVIRTM-RL----- 315 (400)
Q Consensus 267 -----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~~-~~----- 315 (400)
++++.+.++++... .+-|...|+.+-..+.+.|+. ....++..++ +.
T Consensus 219 ~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPED 296 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSS
T ss_pred cchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccc
Confidence 45666666666532 233555566555555554443 2233333333 11
Q ss_pred --CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048364 316 --EPNVIIWGSFLAACKEHKQFDMAERVIKQALR 347 (400)
Q Consensus 316 --~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (400)
.++...+..++..|...|+.++|.++++.+.+
T Consensus 297 ~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 297 TPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 23455556666666666666666666666653
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.2e-06 Score=61.71 Aligned_cols=96 Identities=13% Similarity=-0.065 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc---cHHHHHHHHH
Q 048364 252 MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP---NVIIWGSFLA 327 (400)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p---~~~~~~~l~~ 327 (400)
..+..+...+...|++++|...++++.+. .+.+...+..+..++...|++++|.+.+++. ...| +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 34445555566666666666666666532 1234455666666677777777777777666 3333 3556666777
Q ss_pred HHHhc-CCHHHHHHHHHHHHHcC
Q 048364 328 ACKEH-KQFDMAERVIKQALRMV 349 (400)
Q Consensus 328 ~~~~~-~~~~~a~~~~~~~~~~~ 349 (400)
++... |++++|.+.++++....
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcc
Confidence 77777 77777777777777766
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.47 E-value=3.1e-06 Score=76.31 Aligned_cols=130 Identities=13% Similarity=0.027 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCC-------------hhhHHHHHHHHHhcCChHHHHHHHHhc-cCC
Q 048364 251 EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR-------------IQHYGCMVDLFGKAGFLEEAYEVIRTM-RLE 316 (400)
Q Consensus 251 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~ 316 (400)
...+..+...+.+.|++++|...|+++.+.....++ ...|..+..+|.+.|++++|+..+++. .+.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 345666777777788888888888877743211111 477888999999999999999999988 444
Q ss_pred c-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHH-HHHHHh
Q 048364 317 P-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAER-VRKLML 382 (400)
Q Consensus 317 p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~-~~~~m~ 382 (400)
| +...|..+..+|...|++++|...|+++++.. | .+..++..+..++.+.|+++++.+ .++.|.
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P-~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-P-QNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 57788889999999999999999999999998 8 788899999999999999888764 455554
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.45 E-value=6e-07 Score=81.31 Aligned_cols=117 Identities=12% Similarity=0.040 Sum_probs=89.6
Q ss_pred HHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHH
Q 048364 259 TACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFD 336 (400)
Q Consensus 259 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~ 336 (400)
..+.+.|++++|.+.++++.+. .+.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+..+|...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 3455678888888888888753 2335677888888888889999998888887 5555 5667888888999999999
Q ss_pred HHHHHHHHHHHcCCCCCCchHHHHHHHH--hhcccchHHHHHHHH
Q 048364 337 MAERVIKQALRMVKPENDGGVFTLICDL--YTMNEKWEGAERVRK 379 (400)
Q Consensus 337 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 379 (400)
+|...++++.+.. | .+...+..+..+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~~-p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVK-P-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHS-T-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999988 7 677777777777 788899999998887
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.45 E-value=5.2e-06 Score=60.17 Aligned_cols=91 Identities=12% Similarity=-0.008 Sum_probs=47.7
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCC---hhhHHHH
Q 048364 220 TALICGSAHRGYSEDALSLFEMMQATGVKPNE---MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR---IQHYGCM 293 (400)
Q Consensus 220 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l 293 (400)
..+...+...|++++|...|++..+.... +. ..+..+..++...|++++|...++.+.+.. +.+ ...+..+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~l 82 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHH
Confidence 33445555566666666666665553211 11 244455555556666666666666555321 112 3345555
Q ss_pred HHHHHhcCChHHHHHHHHhc
Q 048364 294 VDLFGKAGFLEEAYEVIRTM 313 (400)
Q Consensus 294 ~~~~~~~g~~~~a~~~~~~~ 313 (400)
..+|...|++++|...|+++
T Consensus 83 a~~~~~~g~~~~A~~~~~~~ 102 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQV 102 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 55566666666666666555
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.3e-06 Score=66.05 Aligned_cols=131 Identities=12% Similarity=0.004 Sum_probs=80.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCC----hhhHHHHHHHHHhcCChHHHHHHHHhc-c----C--Cc-cHH
Q 048364 253 TFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR----IQHYGCMVDLFGKAGFLEEAYEVIRTM-R----L--EP-NVI 320 (400)
Q Consensus 253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~-~----~--~p-~~~ 320 (400)
++..+...+...|++++|...+++..+...-.++ ..++..+...+...|++++|.+.+++. . . .+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4445555556666666666666555432110111 135566666777777777777777665 1 1 11 134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 321 IWGSFLAACKEHKQFDMAERVIKQALRMVK----PENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 321 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
.+..+...+...|++++|...+++..+... +.....++..+...|...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 566777777888888888888887776421 112245677778888888888888888877664
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.7e-06 Score=65.37 Aligned_cols=97 Identities=12% Similarity=0.025 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCC----ChhhHHHHHHHHHhcCChHHHHHHHHhc-------cCCc-cHH
Q 048364 253 TFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP----RIQHYGCMVDLFGKAGFLEEAYEVIRTM-------RLEP-NVI 320 (400)
Q Consensus 253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~-------~~~p-~~~ 320 (400)
++..+...+...|++++|...++...+...-.+ ....+..+...+...|++++|.+.+++. +..+ ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 444455555555666666655555442111011 1334556666677777777777777665 1111 234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 321 IWGSFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 321 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
.+..+...+...|++++|...+++..+..
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 56777778888888888888888877654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.42 E-value=1.6e-06 Score=64.51 Aligned_cols=61 Identities=15% Similarity=0.058 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCCCchHH----HHHHHHhhcccchHHHHHHHHHHhc
Q 048364 321 IWGSFLAACKEHKQFDMAERVIKQALRM-------VKPENDGGVF----TLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 321 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
.|..+..++.+.|++++|+..+++.++. . | .+...| .....++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~-p-d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN-Q-DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT-S-THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC-C-chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6666666666777777777777777766 6 6 566666 6777777777777777777766654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.41 E-value=1.4e-06 Score=63.29 Aligned_cols=97 Identities=14% Similarity=0.146 Sum_probs=84.6
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC-------chH
Q 048364 287 IQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEND-------GGV 357 (400)
Q Consensus 287 ~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~ 357 (400)
...+..+...+...|++++|...|++. ...| +...+..+...+...|++++|...++++.+.. | .+ ..+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~-~~~~~~~~~~~~ 81 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-R-ENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-H-HSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-c-ccchhHHHHHHH
Confidence 356778889999999999999999998 3344 67788899999999999999999999999987 5 34 788
Q ss_pred HHHHHHHhhcccchHHHHHHHHHHhccc
Q 048364 358 FTLICDLYTMNEKWEGAERVRKLMLNQN 385 (400)
Q Consensus 358 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 385 (400)
+..++.+|...|++++|.+.+++..+..
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 9999999999999999999999988743
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.38 E-value=2.4e-06 Score=61.40 Aligned_cols=94 Identities=9% Similarity=0.017 Sum_probs=62.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHh
Q 048364 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKE 331 (400)
Q Consensus 254 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~ 331 (400)
+..+...+.+.|++++|...++.+.+. -+.+...|..+..++...|++++|+..|++. .+.| +...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 344555666777777777777777642 2335566677777777777777777777776 4445 45566777777777
Q ss_pred cCCHHHHHHHHHHHHHcC
Q 048364 332 HKQFDMAERVIKQALRMV 349 (400)
Q Consensus 332 ~~~~~~a~~~~~~~~~~~ 349 (400)
.|++++|...++++++..
T Consensus 98 ~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 777777777777777766
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.38 E-value=2.2e-06 Score=65.26 Aligned_cols=110 Identities=18% Similarity=0.037 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhhhc------C----------CCCChhhHHHHHHHHHhcCChHHHHHHHHhc-
Q 048364 251 EMTFTGVLTACVHTGLVDEGRKYFKMIDEEY------D----------LEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM- 313 (400)
Q Consensus 251 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~----------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~- 313 (400)
...+......+.+.|++++|...|+...... . .+.+...|..+..+|.+.|++++|...+++.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 4566777778888899999999988877420 0 1112356777788888888888888888877
Q ss_pred cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCc-hHHHHHH
Q 048364 314 RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG-GVFTLIC 362 (400)
Q Consensus 314 ~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~ 362 (400)
.+.| +...|..+..+|...|++++|...|+++++.. | .+. .....+.
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-p-~~~~~~~~~l~ 139 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH-P-AAASVVAREMK 139 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-G-GGHHHHHHHHH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC-C-CCHHHHHHHHH
Confidence 4445 46677778888888888888888888888887 6 444 3333333
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.34 E-value=8.1e-07 Score=63.51 Aligned_cols=91 Identities=11% Similarity=0.115 Sum_probs=64.9
Q ss_pred hcCChhhHHHHHHHhhhhcC--CCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHH
Q 048364 263 HTGLVDEGRKYFKMIDEEYD--LEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMA 338 (400)
Q Consensus 263 ~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a 338 (400)
..|++++|+..|++..+. + -+.+...+..+..+|...|++++|.+.|++. ...| +...+..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHH
Confidence 357888888888888742 1 1224567788888888888888888888887 4445 466777788888888888888
Q ss_pred HHHHHHHHHcCCCCCCch
Q 048364 339 ERVIKQALRMVKPENDGG 356 (400)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~ 356 (400)
...+++.++.. | .++.
T Consensus 81 ~~~~~~al~~~-p-~~~~ 96 (117)
T 3k9i_A 81 VELLLKIIAET-S-DDET 96 (117)
T ss_dssp HHHHHHHHHHH-C-CCHH
T ss_pred HHHHHHHHHhC-C-CcHH
Confidence 88888888887 6 4443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.34 E-value=6.4e-06 Score=71.89 Aligned_cols=89 Identities=13% Similarity=0.073 Sum_probs=77.7
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHH
Q 048364 286 RIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICD 363 (400)
Q Consensus 286 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 363 (400)
+..+|..+..+|.+.|++++|.+.+++. ...| +...|..+..+|...|++++|...++++.+.. | .+...+..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P-~~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-P-EDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-C-CCHHHHHHHHH
Confidence 4567888999999999999999999988 5566 56788889999999999999999999999998 8 78888999999
Q ss_pred HhhcccchHHHHH
Q 048364 364 LYTMNEKWEGAER 376 (400)
Q Consensus 364 ~~~~~g~~~~a~~ 376 (400)
++...++.+++.+
T Consensus 350 ~~~~~~~~~~a~k 362 (370)
T 1ihg_A 350 VKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9988888887765
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=0.00023 Score=60.29 Aligned_cols=131 Identities=15% Similarity=0.078 Sum_probs=57.0
Q ss_pred HhcCCcc-hHHHHHHHHHhcCCCCCCHHH-HHHHHHHhhcccc----------hhhhhhhhhhhHHHhccccchHHHHHH
Q 048364 123 LNAGAYD-PGLKLFREMISNEGLTPDQMT-IGAVLSGCSHLGS----------VGLLMGKSAHGFIVKNEWELNEQIATI 190 (400)
Q Consensus 123 ~~~g~~~-~a~~~~~~m~~~~~~~p~~~~-~~~ll~~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~ 190 (400)
.+.|.++ +|+++++.+. .+.|+..| |+.--..+...+. ++. +..+++.+.... +-+..+|+-
T Consensus 40 ~~~~e~s~eaL~~t~~~L---~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~--EL~~~~~~L~~~-PKny~aW~h 113 (331)
T 3dss_A 40 RQAGELDESVLELTSQIL---GANPDFATLWNCRREVLQHLETEKSPEESAALVKA--ELGFLESCLRVN-PKSYGTWHH 113 (331)
T ss_dssp HHTTCCSHHHHHHHHHHH---TTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHH--HHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHH---HHCchhHHHHHHHHHHHHHhcccccchhhhHHHHH--HHHHHHHHHHhC-CCCHHHHHH
Confidence 3455554 6777777777 44565443 3332222222211 222 333333333322 123334443
Q ss_pred HHHHHHhcC--CHHHHHHHHHhccCC---CcccHHHHHHHHHhCCC-hhhHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048364 191 LVDMYAKCG--FLKYALMVFELMEER---NVISWTALICGSAHRGY-SEDALSLFEMMQATGVKPNEMTFTGVLTA 260 (400)
Q Consensus 191 l~~~~~~~g--~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 260 (400)
-..++...| .++++..+++++.+. |..+|+.-.-.+...|. ++++++.++++.+..+. |...|+.....
T Consensus 114 R~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~l 188 (331)
T 3dss_A 114 RCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCL 188 (331)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHH
T ss_pred HHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 333444444 255555555555542 33344433334444444 35555555555554322 34444443333
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.32 E-value=3.3e-06 Score=64.19 Aligned_cols=102 Identities=12% Similarity=-0.010 Sum_probs=72.6
Q ss_pred ccHHHHHHHHHhCCChhhHHHHHHHHHHC--------CC--------CC-CHHHHHHHHHHHHhcCChhhHHHHHHHhhh
Q 048364 217 ISWTALICGSAHRGYSEDALSLFEMMQAT--------GV--------KP-NEMTFTGVLTACVHTGLVDEGRKYFKMIDE 279 (400)
Q Consensus 217 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--------~~--------~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 279 (400)
..+......+.+.|++++|+..|.+.... .. .| +...|..+..++.+.|++++|...++.+.+
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 35666777788888888888888887664 00 11 235677777788888888888888888874
Q ss_pred hcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCccHH
Q 048364 280 EYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNVI 320 (400)
Q Consensus 280 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~~ 320 (400)
. -+.+...|..+..+|...|++++|...|++. .+.|+..
T Consensus 92 ~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 92 R--EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp H--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred c--CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 2 2335667778888888888888888888877 5566543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.32 E-value=4.1e-06 Score=70.20 Aligned_cols=99 Identities=12% Similarity=-0.042 Sum_probs=85.2
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHH
Q 048364 250 NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLA 327 (400)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~ 327 (400)
+...+..+...+...|++++|...|+.+.+. .+.+...|..+..+|.+.|++++|...+++. ...| +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 5567788888999999999999999999853 2336788889999999999999999999988 5566 5678888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCC
Q 048364 328 ACKEHKQFDMAERVIKQALRMVKP 351 (400)
Q Consensus 328 ~~~~~~~~~~a~~~~~~~~~~~~~ 351 (400)
++...|++++|...++++.+.. |
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~-p 103 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA-K 103 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH-H
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-c
Confidence 9999999999999999999887 6
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.6e-06 Score=61.88 Aligned_cols=83 Identities=13% Similarity=0.130 Sum_probs=46.2
Q ss_pred CCChhhHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHH
Q 048364 229 RGYSEDALSLFEMMQATGV--KPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA 306 (400)
Q Consensus 229 ~~~~~~a~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 306 (400)
.|++++|+..|++..+.+. +-+...+..+..++...|++++|...+++..+. .+.+...+..+..++...|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHHH
Confidence 4566666666666665431 112345556666666666666666666666642 122455566666666666666666
Q ss_pred HHHHHhc
Q 048364 307 YEVIRTM 313 (400)
Q Consensus 307 ~~~~~~~ 313 (400)
...+++.
T Consensus 81 ~~~~~~a 87 (117)
T 3k9i_A 81 VELLLKI 87 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666655
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=7.3e-05 Score=63.69 Aligned_cols=192 Identities=12% Similarity=0.020 Sum_probs=130.7
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHhccCCC---cccHHHHHHHHHhC-C-ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048364 188 ATILVDMYAKCG-FLKYALMVFELMEERN---VISWTALICGSAHR-G-YSEDALSLFEMMQATGVKPNEMTFTGVLTAC 261 (400)
Q Consensus 188 ~~~l~~~~~~~g-~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~-~-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 261 (400)
|+.--.++...| .+++++++++.+...+ ..+|+.-...+... + ++++++++++++.+...+ |...|+.-...+
T Consensus 91 Wn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl 169 (349)
T 3q7a_A 91 WQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLY 169 (349)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 333333444455 5888899888887644 44555555555554 6 889999999999886433 667777666666
Q ss_pred HhcCChh--------hHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCC-------hHHHHHHHHhc-cCCc-cHHHHHH
Q 048364 262 VHTGLVD--------EGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF-------LEEAYEVIRTM-RLEP-NVIIWGS 324 (400)
Q Consensus 262 ~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~a~~~~~~~-~~~p-~~~~~~~ 324 (400)
.+.+.++ ++.+.++++.+. -+-|...|+.....+.+.++ ++++++.+++. ...| |...|+.
T Consensus 170 ~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Y 247 (349)
T 3q7a_A 170 SHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNY 247 (349)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 6666666 889999998853 24577888888888888876 68888888877 5556 5667776
Q ss_pred HHHHHHhcCCH--------------------HHHHHHHHHHHHcC----CCCCCchHHHHHHHHhhcccchHHHHHHHHH
Q 048364 325 FLAACKEHKQF--------------------DMAERVIKQALRMV----KPENDGGVFTLICDLYTMNEKWEGAERVRKL 380 (400)
Q Consensus 325 l~~~~~~~~~~--------------------~~a~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 380 (400)
+-..+.+.|+. .....+..++.... ....++.+...++..|...|+.++|.++++.
T Consensus 248 lr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~ 327 (349)
T 3q7a_A 248 LRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEK 327 (349)
T ss_dssp HHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 66666665543 33334444333322 0126788899999999999999999999999
Q ss_pred Hh
Q 048364 381 ML 382 (400)
Q Consensus 381 m~ 382 (400)
+.
T Consensus 328 l~ 329 (349)
T 3q7a_A 328 LS 329 (349)
T ss_dssp HH
T ss_pred HH
Confidence 85
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.25 E-value=1.8e-06 Score=74.52 Aligned_cols=146 Identities=14% Similarity=0.004 Sum_probs=77.4
Q ss_pred ccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHH
Q 048364 217 ISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDL 296 (400)
Q Consensus 217 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 296 (400)
..+..+...+.+.|++++|+..|++.... .|+... +...++.+++...+ . ...|..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHHH
Confidence 44666777777888888888888887664 343321 11222333322211 1 1367778888
Q ss_pred HHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHh-hcccchHH
Q 048364 297 FGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLY-TMNEKWEG 373 (400)
Q Consensus 297 ~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~ 373 (400)
|.+.|++++|...+++. ...| +...|..+..+|...|++++|...|+++++.. | .+..++..+.... ...+..+.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p-~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-P-DDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-C-CCHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999888887 4455 56788888888999999999999999988887 7 6777777777663 34566777
Q ss_pred HHHHHHHHhcc
Q 048364 374 AERVRKLMLNQ 384 (400)
Q Consensus 374 a~~~~~~m~~~ 384 (400)
+...+++|...
T Consensus 318 a~~~~~~~l~~ 328 (338)
T 2if4_A 318 QKEMYKGIFKG 328 (338)
T ss_dssp -----------
T ss_pred HHHHHHHhhCC
Confidence 78888877654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.1e-06 Score=61.81 Aligned_cols=94 Identities=12% Similarity=0.030 Sum_probs=73.3
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC------chH
Q 048364 286 RIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEND------GGV 357 (400)
Q Consensus 286 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~ 357 (400)
+...+..+...+...|++++|.+.|++. ...| +...+..+..++...|++++|...++++++.. | .+ ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p-~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-S-TAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-S-STTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-C-CccHHHHHHHH
Confidence 4456777888888899999999988887 4444 56778888889999999999999999999888 7 55 667
Q ss_pred HHHHHHHhhcccchHHHHHHHHHH
Q 048364 358 FTLICDLYTMNEKWEGAERVRKLM 381 (400)
Q Consensus 358 ~~~l~~~~~~~g~~~~a~~~~~~m 381 (400)
+..+..++...|+++.|...++++
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHhHhhhHhHHHHh
Confidence 777777888778777776555443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.21 E-value=6.8e-06 Score=74.07 Aligned_cols=124 Identities=12% Similarity=0.027 Sum_probs=94.3
Q ss_pred HHHhcCChhhHHHHHHHhhhhcC--C---CC-ChhhHHHHHHHHHhcCChHHHHHHHHhc---------cCCccH-HHHH
Q 048364 260 ACVHTGLVDEGRKYFKMIDEEYD--L---EP-RIQHYGCMVDLFGKAGFLEEAYEVIRTM---------RLEPNV-IIWG 323 (400)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~~~~~--~---~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~---------~~~p~~-~~~~ 323 (400)
.+...|++++|+.++++..+... + .| ...+++.|...|...|++++|+.++++. ...|+. .+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35578999999988887764321 1 12 2467889999999999999999988876 334544 4789
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCCch---HHHHHHHHhhcccchHHHHHHHHHHhccc
Q 048364 324 SFLAACKEHKQFDMAERVIKQALR-----MVKPENDGG---VFTLICDLYTMNEKWEGAERVRKLMLNQN 385 (400)
Q Consensus 324 ~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 385 (400)
.|...|..+|++++|+.+++++++ .| | .++. +...+..++...|.+++|..++.++.+.-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG-~-~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHG-P-SHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-T-TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC-C-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998876 34 4 4443 44567778888899999999999987643
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.16 E-value=1.9e-05 Score=71.48 Aligned_cols=116 Identities=11% Similarity=-0.043 Sum_probs=76.5
Q ss_pred HHHHhcCCHHHHHHHHHhccC--C-CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhh
Q 048364 193 DMYAKCGFLKYALMVFELMEE--R-NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDE 269 (400)
Q Consensus 193 ~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 269 (400)
..+.+.|++++|.+.|++..+ | +...|..+..+|.+.|++++|+..+++..+.. +-+...+..+..++...|++++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 345567778888887777654 2 45667777778888888888888888877763 2255677777777888888888
Q ss_pred HHHHHHHhhhhcCCCCChhhHHHHHHH--HHhcCChHHHHHHHH
Q 048364 270 GRKYFKMIDEEYDLEPRIQHYGCMVDL--FGKAGFLEEAYEVIR 311 (400)
Q Consensus 270 a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 311 (400)
|.+.++++.+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 93 A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 888888777532 2233445555555 777788888888777
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.15 E-value=8.9e-06 Score=70.13 Aligned_cols=150 Identities=12% Similarity=0.026 Sum_probs=82.7
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048364 184 NEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVH 263 (400)
Q Consensus 184 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 263 (400)
....+..+...+.+.|++++|...|++..+.+.... .+...|+.+++...+. ...|..+..++.+
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~ 242 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIK 242 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHH
Confidence 345677788889999999999999998765222111 1223344444433221 1367778888899
Q ss_pred cCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCccH-HHHHHHHHH-HHhcCCHHHHHH
Q 048364 264 TGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNV-IIWGSFLAA-CKEHKQFDMAER 340 (400)
Q Consensus 264 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~-~~~~~l~~~-~~~~~~~~~a~~ 340 (400)
.|++++|...++...+. .+.+...|..+..+|...|++++|...|++. .+.|+. ..+..+... ....+..+.+..
T Consensus 243 ~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 243 LKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp TTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred cCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988853 2346778888999999999999999999988 666643 344444444 234566778888
Q ss_pred HHHHHHHcCCC
Q 048364 341 VIKQALRMVKP 351 (400)
Q Consensus 341 ~~~~~~~~~~~ 351 (400)
.|.++.... |
T Consensus 321 ~~~~~l~~~-p 330 (338)
T 2if4_A 321 MYKGIFKGK-D 330 (338)
T ss_dssp -----------
T ss_pred HHHHhhCCC-C
Confidence 888888776 5
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.14 E-value=2.9e-05 Score=69.96 Aligned_cols=95 Identities=8% Similarity=-0.032 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHH
Q 048364 251 EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAA 328 (400)
Q Consensus 251 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~ 328 (400)
...|..+..++.+.|++++|...++++.+. .+.+...|..+..+|...|++++|...|++. .+.| +...+..+..+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGL--DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 356667777777778888888777777742 2335667777777788888888888887777 5555 34466677777
Q ss_pred HHhcCCHHHHH-HHHHHHHH
Q 048364 329 CKEHKQFDMAE-RVIKQALR 347 (400)
Q Consensus 329 ~~~~~~~~~a~-~~~~~~~~ 347 (400)
+.+.++.+++. ..++.|..
T Consensus 395 ~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 395 QKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 77777776665 33444443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=0.00053 Score=58.13 Aligned_cols=218 Identities=9% Similarity=-0.022 Sum_probs=144.0
Q ss_pred hcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCC----------HHHHHHHHHhccC---CCcccHHHHHHH
Q 048364 159 SHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGF----------LKYALMVFELMEE---RNVISWTALICG 225 (400)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~---~~~~~~~~l~~~ 225 (400)
.+.|.++.. |......+...... +..+|+.--.++...+. ++++..+++.+.. .+..+|+.-.-.
T Consensus 40 ~~~~e~s~e-aL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDES-VLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHH-HHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHcCCCCHH-HHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 344444421 66666666665432 33444433333333222 5778888888776 355566666666
Q ss_pred HHhCC--ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhc--
Q 048364 226 SAHRG--YSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGL-VDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA-- 300 (400)
Q Consensus 226 ~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 300 (400)
+...+ .+++++..++++.+.... |...|+.-..++...|. ++++.+.++.+.+. -+-|...|+.....+.+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSC
T ss_pred HhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhh
Confidence 66777 478999999999987533 77778777777778888 58999999999853 244677787777666655
Q ss_pred ------------CChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHcCCCCCCc
Q 048364 301 ------------GFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEH-----------KQFDMAERVIKQALRMVKPENDG 355 (400)
Q Consensus 301 ------------g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~ 355 (400)
+.++++++.+.+. ...| |...|+-+-..+.+. +.++++++.++++.+.. | .+.
T Consensus 195 ~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~-p-d~~ 272 (331)
T 3dss_A 195 QPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE-P-ENK 272 (331)
T ss_dssp CC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC-T-TCH
T ss_pred ccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC-c-ccc
Confidence 4577888888887 4455 555665544444443 45789999999999999 8 554
Q ss_pred hHHHHHHHH---hhcccchHHHHHHHHHHhc
Q 048364 356 GVFTLICDL---YTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 356 ~~~~~l~~~---~~~~g~~~~a~~~~~~m~~ 383 (400)
..+..++.. ....|..+++...+.++++
T Consensus 273 w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 273 WCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 444444332 2245777888888888875
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00021 Score=66.01 Aligned_cols=170 Identities=12% Similarity=-0.013 Sum_probs=132.4
Q ss_pred CCHHHHHHHHHhccCCC---cccHHHHHHHHHhCCC----------hhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048364 199 GFLKYALMVFELMEERN---VISWTALICGSAHRGY----------SEDALSLFEMMQATGVKPNEMTFTGVLTACVHTG 265 (400)
Q Consensus 199 g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~----------~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 265 (400)
...++|.+.++++.+-+ ..+|+.--.++...|+ ++++++.++++.+...+ +..+|..-..++.+.+
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcc
Confidence 34567889998887633 3456655555656666 89999999999887433 6677888788888888
Q ss_pred --ChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcC-ChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhc--------
Q 048364 266 --LVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG-FLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEH-------- 332 (400)
Q Consensus 266 --~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~-------- 332 (400)
+++++.+.++++.+. -+-+..+|+.-...+.+.| .++++++.++++ ...| |...|+.....+...
T Consensus 122 ~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 669999999999963 2446778888888888888 899999999988 5556 566777766666553
Q ss_pred ------CCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHH
Q 048364 333 ------KQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEG 373 (400)
Q Consensus 333 ------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 373 (400)
+.++++.+.+++++... | .+..+|..+...+...+++++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~-P-~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTD-P-NDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHC-S-SCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhC-C-CCccHHHHHHHHHhcCCCccc
Confidence 56899999999999999 9 899999999999988887554
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.08 E-value=9.5e-06 Score=60.33 Aligned_cols=102 Identities=14% Similarity=0.054 Sum_probs=72.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhhhcCCCC-----C-----hhhHHHHHHHHHhcCChHHHHHHHHhc-cC-------
Q 048364 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP-----R-----IQHYGCMVDLFGKAGFLEEAYEVIRTM-RL------- 315 (400)
Q Consensus 254 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~------- 315 (400)
+......+.+.|++++|...|++..+-..-.| + ...|..+..++.+.|++++|+..+++. .+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 34445556666777777777766663211100 1 227888888888888888888888877 55
Q ss_pred Ccc-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchH
Q 048364 316 EPN-VIIW----GSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357 (400)
Q Consensus 316 ~p~-~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 357 (400)
.|+ ...| .....++...|++++|+..|++.++.. | .+...
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~-p-~d~~~ 138 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI-E-ERKGE 138 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-H-HCCSC
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC-C-CcHHH
Confidence 775 4477 888999999999999999999999987 6 44433
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.00 E-value=4.8e-05 Score=66.31 Aligned_cols=88 Identities=8% Similarity=-0.057 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHH
Q 048364 251 EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAA 328 (400)
Q Consensus 251 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~ 328 (400)
...|..+..++.+.|++++|...++++.+. .+.+...+..+..+|...|++++|.+.|++. .+.| +...+..+..+
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~ 350 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEI--DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKV 350 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 456777777788888888888888888732 2335667777888888888888888888877 4455 45556666666
Q ss_pred HHhcCCHHHHHH
Q 048364 329 CKEHKQFDMAER 340 (400)
Q Consensus 329 ~~~~~~~~~a~~ 340 (400)
+...++.+++.+
T Consensus 351 ~~~~~~~~~a~k 362 (370)
T 1ihg_A 351 KQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666665543
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.00 E-value=4.7e-05 Score=51.02 Aligned_cols=80 Identities=20% Similarity=0.265 Sum_probs=58.1
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHH
Q 048364 287 IQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDL 364 (400)
Q Consensus 287 ~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 364 (400)
...+..+...+...|++++|...+++. ...| +...+..+..++...|++++|...+++..+.. | .+..++..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p-~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-P-NNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-C-CCHHHHHHHHHH
Confidence 455666777777788888888877776 3334 45667777778888888888888888888877 7 667777777766
Q ss_pred hhcc
Q 048364 365 YTMN 368 (400)
Q Consensus 365 ~~~~ 368 (400)
+...
T Consensus 87 ~~~~ 90 (91)
T 1na3_A 87 KQKQ 90 (91)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.00 E-value=3.9e-05 Score=69.14 Aligned_cols=126 Identities=10% Similarity=-0.021 Sum_probs=96.3
Q ss_pred HHHHhCCChhhHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHhcCChhhHHHHHHHhhhh----cC-CCCC-hhhH
Q 048364 224 CGSAHRGYSEDALSLFEMMQAT---GVKP----NEMTFTGVLTACVHTGLVDEGRKYFKMIDEE----YD-LEPR-IQHY 290 (400)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~m~~~---~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~-~~~~ 290 (400)
..+...|++++|+.++++.++. -..| ...+++.|..+|...|++++|+.++++..+- .| ..|+ ..++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3466789999999999887653 1222 2467899999999999999999999877642 12 1232 4678
Q ss_pred HHHHHHHHhcCChHHHHHHHHhc---------cCCccHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 291 GCMVDLFGKAGFLEEAYEVIRTM---------RLEPNVI-IWGSFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 291 ~~l~~~~~~~g~~~~a~~~~~~~---------~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
+.|...|...|++++|+.++++. .-.|+.. +.+.+..++...+.+++|+.+++++.+..
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887 2334433 56677778889999999999999998743
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.99 E-value=2.5e-05 Score=55.28 Aligned_cols=80 Identities=8% Similarity=0.075 Sum_probs=62.7
Q ss_pred hhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048364 268 DEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQA 345 (400)
Q Consensus 268 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 345 (400)
+.|...|+...+ ..+.+...+..+...|...|++++|...|++. ...| +...|..+..+|...|++++|...++++
T Consensus 2 ~~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 457777887774 22346677888888899999999999999887 4445 4667888888888999999999999988
Q ss_pred HHcC
Q 048364 346 LRMV 349 (400)
Q Consensus 346 ~~~~ 349 (400)
++..
T Consensus 80 l~~~ 83 (115)
T 2kat_A 80 LAAA 83 (115)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8876
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.94 E-value=4.6e-05 Score=52.42 Aligned_cols=62 Identities=11% Similarity=0.013 Sum_probs=29.4
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048364 287 IQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRM 348 (400)
Q Consensus 287 ~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 348 (400)
...+..+..+|...|++++|...|++. ...| +...|..+..+|...|++++|...+++.++.
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344444455555555555555555544 2222 2334444455555555555555555554443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00046 Score=63.73 Aligned_cols=160 Identities=7% Similarity=-0.052 Sum_probs=124.9
Q ss_pred CCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------hhhHHHHHHHhhhhcCCCCChhhHHHHHHHHH
Q 048364 229 RGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGL----------VDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298 (400)
Q Consensus 229 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 298 (400)
....++|++.++++...... +...|+.--.++...++ ++++.+.++.+.+. -+-+..+|+.-.-++.
T Consensus 42 ~~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 42 GELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLS 118 (567)
T ss_dssp TCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 34457889999999886322 44556666666666666 89999999999963 3446778888888888
Q ss_pred hcC--ChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcc-----
Q 048364 299 KAG--FLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHK-QFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN----- 368 (400)
Q Consensus 299 ~~g--~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 368 (400)
+.| +++++++.++++ ...| |...|+.-..++.+.| .++++.+.++++++.. | .+..+|+....++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p-~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-F-SNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-C-CCHHHHHHHHHHHHHHSCCCC
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-C-CCccHHHHHHHHHHhhccccc
Confidence 899 779999999999 4445 7778888888888888 8999999999999999 8 8889999888887663
Q ss_pred ---------cchHHHHHHHHHHhccccccccCcccc
Q 048364 369 ---------EKWEGAERVRKLMLNQNVRKARGSSVI 395 (400)
Q Consensus 369 ---------g~~~~a~~~~~~m~~~~~~~~~~~~~~ 395 (400)
+.++++.+.+++... +.|...+.|.
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~--~~P~~~saW~ 230 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWF 230 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHH--HCSSCSHHHH
T ss_pred ccccccccHHHHHHHHHHHHHHHh--hCCCCccHHH
Confidence 678889998888775 4466666664
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00026 Score=51.92 Aligned_cols=110 Identities=9% Similarity=-0.122 Sum_probs=49.5
Q ss_pred ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHh----cCChHHH
Q 048364 231 YSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK----AGFLEEA 306 (400)
Q Consensus 231 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a 306 (400)
++++|+..|++..+.| .|+.. +...|...+..++|.++|++..+. .+...+..|...|.. .+++++|
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHHH
Confidence 3455555555555544 22222 333444444455555555555431 233444444444444 4455555
Q ss_pred HHHHHhccCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 048364 307 YEVIRTMRLEPNVIIWGSFLAACKE----HKQFDMAERVIKQALRMV 349 (400)
Q Consensus 307 ~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 349 (400)
.+.|++.--.-+...+..|...|.. .+++++|..++++..+.+
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555544111233344444444444 444555555555554444
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00013 Score=51.53 Aligned_cols=78 Identities=10% Similarity=-0.032 Sum_probs=54.6
Q ss_pred hhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHh
Q 048364 233 EDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRT 312 (400)
Q Consensus 233 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 312 (400)
++|+..|++..+.. +.+...+..+..++...|++++|...++...+. .+.+...|..+..+|...|++++|...|++
T Consensus 2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 35667777776653 235566777777777888888888888877743 233456677777788888888888887777
Q ss_pred c
Q 048364 313 M 313 (400)
Q Consensus 313 ~ 313 (400)
.
T Consensus 79 a 79 (115)
T 2kat_A 79 G 79 (115)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00051 Score=50.33 Aligned_cols=113 Identities=7% Similarity=-0.097 Sum_probs=84.4
Q ss_pred CChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhccCCccHHHHHHHHHHHHh----cCCHHHHHH
Q 048364 265 GLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKE----HKQFDMAER 340 (400)
Q Consensus 265 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~ 340 (400)
+++++|.++|++..+. + .|. .. +...|...+.+++|.+.|++.-..-+...+..+...|.. .+++++|..
T Consensus 9 ~d~~~A~~~~~~aa~~-g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-N-EMF--GC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHT-T-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcC-C-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 4677888888888743 3 222 22 777777778888888888887223466677777777777 788888888
Q ss_pred HHHHHHHcCCCCCCchHHHHHHHHhhc----ccchHHHHHHHHHHhccccc
Q 048364 341 VIKQALRMVKPENDGGVFTLICDLYTM----NEKWEGAERVRKLMLNQNVR 387 (400)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~ 387 (400)
+|++..+.+ ++..+..|...|.. .+++++|.+.+++..+.|..
T Consensus 83 ~~~~Aa~~g----~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 83 YYSKACGLN----DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCC----CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 888888876 46777888888887 78888888888888877653
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.76 E-value=3.8e-05 Score=56.97 Aligned_cols=84 Identities=14% Similarity=0.129 Sum_probs=62.2
Q ss_pred hcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCCCchHHHHHHHHhh
Q 048364 299 KAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQ----------FDMAERVIKQALRMVKPENDGGVFTLICDLYT 366 (400)
Q Consensus 299 ~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 366 (400)
+.+.+++|.+.++.. ...| +...|..+..++...++ +++|+..|+++++.+ | ....+|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P-~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-P-KKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-T-TCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-c-CcHHHHHHHHHHHH
Confidence 344566666666665 3344 45556556666665554 569999999999999 8 88899999999998
Q ss_pred ccc-----------chHHHHHHHHHHhcc
Q 048364 367 MNE-----------KWEGAERVRKLMLNQ 384 (400)
Q Consensus 367 ~~g-----------~~~~a~~~~~~m~~~ 384 (400)
..| ++++|.+.|++..+.
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 774 899999999988763
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00018 Score=50.21 Aligned_cols=66 Identities=8% Similarity=-0.072 Sum_probs=60.7
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhcc
Q 048364 317 PNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 317 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
++...+..+...+...|++++|...++++++.. | .++.++..++.++...|++++|++.+++..+.
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-P-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-C-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 456678888999999999999999999999998 8 88999999999999999999999999998864
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00014 Score=54.00 Aligned_cols=86 Identities=14% Similarity=0.085 Sum_probs=58.1
Q ss_pred hcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCC----------hHHHHHHHHhc-cCCc-cHHHHHHHHHHHH
Q 048364 263 HTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF----------LEEAYEVIRTM-RLEP-NVIIWGSFLAACK 330 (400)
Q Consensus 263 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~ 330 (400)
+.+.+++|.+.++...+. -+.+...|..+..++...++ +++|+..|++. .+.| +...|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 344556666666666532 12355566666666665554 34777777777 5566 4457777777777
Q ss_pred hc-----------CCHHHHHHHHHHHHHcCCC
Q 048364 331 EH-----------KQFDMAERVIKQALRMVKP 351 (400)
Q Consensus 331 ~~-----------~~~~~a~~~~~~~~~~~~~ 351 (400)
.. |++++|+..|+++++.+ |
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~-P 122 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQ-P 122 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHC-T
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhC-C
Confidence 66 48999999999999999 7
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00016 Score=49.68 Aligned_cols=62 Identities=11% Similarity=0.099 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHh
Q 048364 319 VIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLML 382 (400)
Q Consensus 319 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 382 (400)
...+..+..+|...|++++|+..|+++++.. | .++.+|..++.+|...|++++|.+.+++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-P-DYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445555555555555555555555555555 5 455555555555555555555555555544
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00032 Score=47.82 Aligned_cols=80 Identities=11% Similarity=0.103 Sum_probs=59.9
Q ss_pred HHHHHHhcCChHHHHHHHHhc-cCCc-cHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhccc
Q 048364 293 MVDLFGKAGFLEEAYEVIRTM-RLEP-NVI-IWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNE 369 (400)
Q Consensus 293 l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 369 (400)
....+.+.|++++|.+.|++. ...| +.. .+..+..+|...|++++|...|+++++.. | .+..++.. +
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p-~~~~~~~~--------~ 75 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN-P-DSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-T-TSTHHHHH--------H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-C-CcHHHHHH--------H
Confidence 456778889999999999887 4445 456 78888888999999999999999999988 7 56555532 5
Q ss_pred chHHHHHHHHHHh
Q 048364 370 KWEGAERVRKLML 382 (400)
Q Consensus 370 ~~~~a~~~~~~m~ 382 (400)
.+.++...+++..
T Consensus 76 ~~~~a~~~~~~~~ 88 (99)
T 2kc7_A 76 MVMDILNFYNKDM 88 (99)
T ss_dssp HHHHHHHHHCCTT
T ss_pred HHHHHHHHHHHHh
Confidence 5566666665544
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00035 Score=47.05 Aligned_cols=68 Identities=16% Similarity=0.172 Sum_probs=44.9
Q ss_pred ccHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhcccc
Q 048364 317 PNVIIWGSFLAACKEHKQ---FDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNV 386 (400)
Q Consensus 317 p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 386 (400)
+|...+..+..++...++ .++|..+++++++.+ | .++.+...++..+...|++++|+..|+++.+..-
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p-~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-P-YNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-c-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 345555555565544433 577777777777777 6 6777777777777777777777777777766543
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00041 Score=46.22 Aligned_cols=65 Identities=17% Similarity=0.246 Sum_probs=59.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhcc
Q 048364 318 NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 318 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
+...+..+...+...|++++|...+++.++.. | .+..++..+..++...|++++|...+++..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-P-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-C-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45678888899999999999999999999998 8 78899999999999999999999999998764
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.068 Score=49.52 Aligned_cols=142 Identities=8% Similarity=0.044 Sum_probs=80.9
Q ss_pred HHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHHHhCCHHHHHHHHhhCCC-C-ChhhHHHHHHHHHcCCC
Q 048364 19 ILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARKLFDELPE-R-NAVTWNTMIKGYSKSGN 96 (400)
Q Consensus 19 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~-~-~~~~~~~l~~~~~~~~~ 96 (400)
|.....++ +.|++..+.++...+....+.|- ..|..+...+.....++....+++-+. | ....-+.-+..+.+.++
T Consensus 10 ~~~a~~a~-~~~~~~~~~~l~~~l~~~pL~~y-l~y~~l~~~l~~~~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~ 87 (618)
T 1qsa_A 10 YAQIKQAW-DNRQMDVVEQMMPGLKDYPLYPY-LEYRQITDDLMNQPAVTVTNFVRANPTLPPARTLQSRFVNELARRED 87 (618)
T ss_dssp HHHHHHHH-HTTCHHHHHHHSGGGTTSTTHHH-HHHHHHHHTGGGCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHH-HCCCHHHHHHHHHhhcCCCcHHH-HHHHHHHhCcccCCHHHHHHHHHHCCCChhHHHHHHHHHHHHHhCCC
Confidence 44444443 35667666666544422212111 133333222223356667777666653 2 22334555677788999
Q ss_pred hHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchh
Q 048364 97 VCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVG 165 (400)
Q Consensus 97 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~ 165 (400)
+...+.++.. ...+...-.....+....|+.++|......+-......| ..+..++..+.+.|...
T Consensus 88 w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p--~~c~~l~~~~~~~g~lt 153 (618)
T 1qsa_A 88 WRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQP--NACDKLFSVWRASGKQD 153 (618)
T ss_dssp HHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCC--THHHHHHHHHHHTTCSC
T ss_pred HHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCc--HHHHHHHHHHHHCCCCC
Confidence 9999997777 434555555577778888998888888877762322333 45566666666555443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00024 Score=62.97 Aligned_cols=84 Identities=12% Similarity=0.065 Sum_probs=56.9
Q ss_pred cCChHHHHHHHHhc---------cCCccH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----C--CCCchHHHHHHH
Q 048364 300 AGFLEEAYEVIRTM---------RLEPNV-IIWGSFLAACKEHKQFDMAERVIKQALRMVK----P--ENDGGVFTLICD 363 (400)
Q Consensus 300 ~g~~~~a~~~~~~~---------~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~--~~~~~~~~~l~~ 363 (400)
.|++++|+.++++. ...|+. .+++.+..+|..+|++++|+.+++++++... + +....+++.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46677777776654 223333 4678888888888888888888887775311 2 023446777788
Q ss_pred HhhcccchHHHHHHHHHHhc
Q 048364 364 LYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 364 ~~~~~g~~~~a~~~~~~m~~ 383 (400)
.|...|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 88888888888888877764
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.001 Score=59.01 Aligned_cols=85 Identities=14% Similarity=0.063 Sum_probs=67.8
Q ss_pred hcCChhhHHHHHHHhhhhc--CCCC----ChhhHHHHHHHHHhcCChHHHHHHHHhc---------cCCccH-HHHHHHH
Q 048364 263 HTGLVDEGRKYFKMIDEEY--DLEP----RIQHYGCMVDLFGKAGFLEEAYEVIRTM---------RLEPNV-IIWGSFL 326 (400)
Q Consensus 263 ~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~---------~~~p~~-~~~~~l~ 326 (400)
..|++++|+.++++..+.. -+.| ...+++.|..+|...|++++|+.++++. ...|+. .+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3578899999988776421 1222 2467899999999999999999999887 345554 4799999
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 048364 327 AACKEHKQFDMAERVIKQALR 347 (400)
Q Consensus 327 ~~~~~~~~~~~a~~~~~~~~~ 347 (400)
..|..+|++++|+.+++++.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999999886
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0028 Score=56.15 Aligned_cols=100 Identities=13% Similarity=0.021 Sum_probs=74.2
Q ss_pred HHHHHhcCChhhHHHHHHHhhhhc--CCCC----ChhhHHHHHHHHHhcCChHHHHHHHHhc---------cCCccH-HH
Q 048364 258 LTACVHTGLVDEGRKYFKMIDEEY--DLEP----RIQHYGCMVDLFGKAGFLEEAYEVIRTM---------RLEPNV-II 321 (400)
Q Consensus 258 ~~~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~---------~~~p~~-~~ 321 (400)
+..+.+.|++++|+.++++..+.. -+.| ...+++.+...|...|++++|+.++++. ...|+. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445667789999999998877421 1222 2456888999999999999999988876 344544 47
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCCchHHH
Q 048364 322 WGSFLAACKEHKQFDMAERVIKQALR-----MVKPENDGGVFT 359 (400)
Q Consensus 322 ~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 359 (400)
++.|...|..+|++++|+.+++++.+ .| | .++.+-.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG-~-~Hp~~~~ 414 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHG-R-EHSLIED 414 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-T-TSHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC-C-CChHHHH
Confidence 89999999999999999999998876 34 5 5554443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00053 Score=60.84 Aligned_cols=90 Identities=10% Similarity=0.118 Sum_probs=71.2
Q ss_pred HHHHHhcCChHHHHHHHHhc---------cCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCCC---chH
Q 048364 294 VDLFGKAGFLEEAYEVIRTM---------RLEPN-VIIWGSFLAACKEHKQFDMAERVIKQALRMVK---PEND---GGV 357 (400)
Q Consensus 294 ~~~~~~~g~~~~a~~~~~~~---------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~---~~~ 357 (400)
+..+.+.|++++|+..+++. ...|+ ..+++.+..+|...|++++|+.++++++.... ++.+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 55566889999999999876 12232 45789999999999999999999998886321 1133 456
Q ss_pred HHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 358 FTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 358 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
++.|+..|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88899999999999999999998875
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=97.27 E-value=0.015 Score=41.04 Aligned_cols=141 Identities=10% Similarity=0.031 Sum_probs=99.9
Q ss_pred HHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHH
Q 048364 226 SAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEE 305 (400)
Q Consensus 226 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 305 (400)
+.-.|..++..++..+.... .+..-||.+|--....-+-+-..++++.+-+-+.+. .+|+...
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis--------------~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcH--------------hhhcHHH
Confidence 44567778888887777664 255667777766666666666677777665432222 3444444
Q ss_pred HHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhccc
Q 048364 306 AYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQN 385 (400)
Q Consensus 306 a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 385 (400)
....+-.++ .+...++..+.....+|+-+.-.+++..+.... + +++.....+..+|.+-|+..+|.+++.+.-+.|
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~-~-~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-E-VSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-C-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccC-C-CChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 444444443 244556677888899999999999999876655 5 789999999999999999999999999999988
Q ss_pred cc
Q 048364 386 VR 387 (400)
Q Consensus 386 ~~ 387 (400)
++
T Consensus 156 ~k 157 (172)
T 1wy6_A 156 EK 157 (172)
T ss_dssp CH
T ss_pred hH
Confidence 75
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.02 Score=48.85 Aligned_cols=143 Identities=14% Similarity=0.034 Sum_probs=86.4
Q ss_pred CCcccHHHHHHHHH--hCC---ChhhHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh---cC-C----hhhHHHHHHHhhh
Q 048364 214 RNVISWTALICGSA--HRG---YSEDALSLFEMMQATGVKPN-EMTFTGVLTACVH---TG-L----VDEGRKYFKMIDE 279 (400)
Q Consensus 214 ~~~~~~~~l~~~~~--~~~---~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~---~~-~----~~~a~~~~~~~~~ 279 (400)
.+...|...+.+.. ..+ +..+|..+|++..+. .|+ ...+..+..++.. .+ . .......++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 46777877776543 333 347889999998886 454 3444443333321 11 0 1111111111111
Q ss_pred hcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHH
Q 048364 280 EYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358 (400)
Q Consensus 280 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 358 (400)
....+.+..+|..+...+...|++++|...++++ .+.|+...|..+...+.-.|++++|.+.++++...+ | ...+|
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~-P--~~~t~ 346 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR-P--GANTL 346 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-C--SHHHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-C--CcChH
Confidence 1122456667777766677778888888888887 555777777777777888888888888888888887 5 44455
Q ss_pred HHH
Q 048364 359 TLI 361 (400)
Q Consensus 359 ~~l 361 (400)
...
T Consensus 347 ~~~ 349 (372)
T 3ly7_A 347 YWI 349 (372)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0013 Score=44.62 Aligned_cols=58 Identities=12% Similarity=0.205 Sum_probs=52.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCch-HHHHHHHHhhcccchHHHHHHHHHHhcc
Q 048364 325 FLAACKEHKQFDMAERVIKQALRMVKPENDGG-VFTLICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 325 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
....+...|++++|...++++++.. | .+.. .+..++.+|...|++++|.+.+++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-P-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-S-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-C-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4567889999999999999999998 8 7788 9999999999999999999999998864
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0059 Score=59.24 Aligned_cols=130 Identities=14% Similarity=0.038 Sum_probs=80.1
Q ss_pred HHHHhcCCHHHHHH-HHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHH
Q 048364 193 DMYAKCGFLKYALM-VFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGR 271 (400)
Q Consensus 193 ~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 271 (400)
......+++++|.+ ++..+. +......++..+.+.|.+++|+++.+. |. . -.......|+++.|.
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-~----~f~~~l~~~~~~~A~ 672 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPD-------QD-Q----KFELALKVGQLTLAR 672 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-H----HHHHHHHHTCHHHHH
T ss_pred hHHHHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCC-------cc-h----heehhhhcCCHHHHH
Confidence 33446788888877 554433 011226667777888888888766531 11 1 122345678888888
Q ss_pred HHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 272 KYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
++.+.+ .+...|..+.+.+.+.|+++.|.+.|.+++- |..+...+...|+.+...++.+.....+
T Consensus 673 ~~~~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d------~~~l~~l~~~~~~~~~~~~~~~~a~~~~ 737 (814)
T 3mkq_A 673 DLLTDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD------LESLFLLHSSFNNKEGLVTLAKDAETTG 737 (814)
T ss_dssp HHHTTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC------HHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC------hhhhHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 776444 3557888888888888888888888888741 2233444444555555555555444444
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0055 Score=52.31 Aligned_cols=134 Identities=13% Similarity=0.072 Sum_probs=93.1
Q ss_pred CCCCHHHHHHHHHHHH--hcC---ChhhHHHHHHHhhhhcCCCCC-hhhHHHHHHHHHh---cC-C-------hHHHHHH
Q 048364 247 VKPNEMTFTGVLTACV--HTG---LVDEGRKYFKMIDEEYDLEPR-IQHYGCMVDLFGK---AG-F-------LEEAYEV 309 (400)
Q Consensus 247 ~~p~~~~~~~l~~~~~--~~~---~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~g-~-------~~~a~~~ 309 (400)
.+.+...|...+++.. ..+ ...+|..+|+++.+. .|+ ...|..+..+|.. .+ . ...+.+.
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 3556677777776643 333 357899999999853 554 3445544444431 11 1 1122222
Q ss_pred HHhc-cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhcccc
Q 048364 310 IRTM-RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNV 386 (400)
Q Consensus 310 ~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 386 (400)
...+ ....+..+|..+...+...|++++|...+++++..+ | +...|..+...+.-.|++++|.+.+++....+-
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln-~--s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE-M--SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-C--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-C--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 2222 234577788888888888899999999999999998 5 678888999999999999999999998877543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0079 Score=49.23 Aligned_cols=82 Identities=12% Similarity=0.163 Sum_probs=44.1
Q ss_pred HHHHHHHhc-cCCcc---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcc-cchHHH
Q 048364 305 EAYEVIRTM-RLEPN---VIIWGSFLAACKEH-----KQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN-EKWEGA 374 (400)
Q Consensus 305 ~a~~~~~~~-~~~p~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a 374 (400)
.|...+++. .+.|+ ...|..+...|... |+.++|.++|++.++.+ |..+..++......++.. |+.+++
T Consensus 181 ~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln-P~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 181 AAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC-SAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC-CTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC-CCCCchHHHHHHHHHHHhcCCHHHH
Confidence 344444444 44443 33455555555552 56666666666666666 522355666666665553 666666
Q ss_pred HHHHHHHhccccc
Q 048364 375 ERVRKLMLNQNVR 387 (400)
Q Consensus 375 ~~~~~~m~~~~~~ 387 (400)
.+.+++......+
T Consensus 260 ~~~L~kAL~a~p~ 272 (301)
T 3u64_A 260 DEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHCCGG
T ss_pred HHHHHHHHcCCCC
Confidence 6666666554444
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.012 Score=40.34 Aligned_cols=73 Identities=11% Similarity=-0.022 Sum_probs=48.0
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhc-c--------CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchH
Q 048364 287 IQHYGCMVDLFGKAGFLEEAYEVIRTM-R--------LEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357 (400)
Q Consensus 287 ~~~~~~l~~~~~~~g~~~~a~~~~~~~-~--------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 357 (400)
..-+..+...+.+.|++..|...|+.. . -.+....+..+..++.+.|+++.|..+++++.+.. | .+..+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~-P-~~~~~ 82 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-P-EHQRA 82 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-TCHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-C-CCHHH
Confidence 334445666666666666666666655 0 12345677778888888888888888888888887 7 55554
Q ss_pred HHHH
Q 048364 358 FTLI 361 (400)
Q Consensus 358 ~~~l 361 (400)
...+
T Consensus 83 ~~n~ 86 (104)
T 2v5f_A 83 NGNL 86 (104)
T ss_dssp HHHH
T ss_pred HhhH
Confidence 4333
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00071 Score=59.21 Aligned_cols=208 Identities=11% Similarity=0.084 Sum_probs=119.8
Q ss_pred CchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCCCChhhHHHHHHHHHc
Q 048364 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPERNAVTWNTMIKGYSK 93 (400)
Q Consensus 15 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 93 (400)
|+..|..++.++.+.|.++.-..++....+.. .++.+=+.|+-+| +.++..+-.+.+ ..||..-...+.+-|..
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~~rL~elEefl---~~~N~A~iq~VGDrcf~ 156 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYD 156 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTSCSSSTTTSTT---SCCSSSCTHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhhCcHHHHHHHH---cCCCcccHHHHHHHHHH
Confidence 45556666666666666666666665554432 2334445566666 665544322221 13555555666666666
Q ss_pred CCChHHHHHHHhhCC------------------------CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHH
Q 048364 94 SGNVCEARDFFERMP------------------------LRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQM 149 (400)
Q Consensus 94 ~~~~~~a~~~~~~~~------------------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 149 (400)
.|.++.|.-+|..+. ..++.+|--+-.+|...+++.-|.-.--.++ - .||
T Consensus 157 e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniI-v---had-- 230 (624)
T 3lvg_A 157 EKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIV-V---HAD-- 230 (624)
T ss_dssp SCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH-C---CSS--
T ss_pred ccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhc-c---cHH--
Confidence 666666666665553 2255677777777777777766655444443 1 121
Q ss_pred HHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC-----------CCccc
Q 048364 150 TIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE-----------RNVIS 218 (400)
Q Consensus 150 ~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~ 218 (400)
....++.-|-..|.+++ ...+++.-... -.....+|+.|.-.|++- +.++..+.++..-+ .....
T Consensus 231 eL~elv~~YE~~G~f~E--LIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahL 306 (624)
T 3lvg_A 231 ELEELINYYQDRGYFEE--LITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHL 306 (624)
T ss_dssp CCSGGGSSSSTTCCCTT--STTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTC
T ss_pred HHHHHHHHHHhCCCHHH--HHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence 22345566677777776 55555554421 134567788888777764 45555555544332 24566
Q ss_pred HHHHHHHHHhCCChhhHHH
Q 048364 219 WTALICGSAHRGYSEDALS 237 (400)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~ 237 (400)
|.-++-.|.+-.++|.|..
T Consensus 307 W~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 307 WAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHhcchhHHHHHH
Confidence 7778888887777776654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.034 Score=53.82 Aligned_cols=26 Identities=19% Similarity=-0.041 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhc
Q 048364 186 QIATILVDMYAKCGFLKYALMVFELM 211 (400)
Q Consensus 186 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 211 (400)
..|..+...+.+.|+++.|.+.|..+
T Consensus 682 ~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 682 MKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 34555555555555555555554443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.014 Score=39.03 Aligned_cols=67 Identities=12% Similarity=-0.025 Sum_probs=48.0
Q ss_pred CCChhhHHHHHHHHHhcCC---hHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048364 284 EPRIQHYGCMVDLFGKAGF---LEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKP 351 (400)
Q Consensus 284 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 351 (400)
+.++..+..+..++...++ .++|..++++. ...| +......+...+.+.|++++|+..|+++.+.. |
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~-p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN-D 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC-C
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-C
Confidence 3456666777777654444 67888888877 4455 45566777778888888888888888888877 6
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.15 Score=38.31 Aligned_cols=128 Identities=18% Similarity=0.172 Sum_probs=78.1
Q ss_pred HHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 048364 194 MYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKY 273 (400)
Q Consensus 194 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 273 (400)
.....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|.-.|+.+...++
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 345678888888777665 3566788888888888888888887776532 33344445556776665555
Q ss_pred HHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048364 274 FKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQA 345 (400)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 345 (400)
-+....+ | -++....++.-.|+++++.++|.+.+.-|....+ ....|-.+.|.++.+++
T Consensus 83 a~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~~------A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 83 QNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYAV------AKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHH------HHHTTCHHHHHHHHHHT
T ss_pred HHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHHH------HHHcCcHHHHHHHHHHh
Confidence 4444422 1 2455556667778888888888777544433221 12245556666666554
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.47 E-value=0.00017 Score=62.98 Aligned_cols=237 Identities=10% Similarity=0.118 Sum_probs=144.9
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhc
Q 048364 81 AVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSH 160 (400)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~ 160 (400)
+..|..+..+....+++.+|++.|-+ ..|+..|..++.+..+.|.+++-+.++...+ +..-.| ..=+.++-+|++
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaR-k~~ke~--~IDteLi~ayAk 128 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMAR-KKARES--YVETELIFALAK 128 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTS-TTCCST--TTTHHHHHHHHT
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHhccc--ccHHHHHHHHHh
Confidence 34567777777777777777666643 3355666677777777777777777765554 332223 333466777777
Q ss_pred ccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC------------------------CCc
Q 048364 161 LGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE------------------------RNV 216 (400)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------------------~~~ 216 (400)
.++..+ -++++. .|+..-...+.+-+...|.++.|.-+|..+.. .++
T Consensus 129 ~~rL~e--lEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ 199 (624)
T 3lvg_A 129 TNRLAE--LEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANST 199 (624)
T ss_dssp SCSSST--TTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSS
T ss_pred hCcHHH--HHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 777665 333332 24444445566666666777666666655441 367
Q ss_pred ccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHH
Q 048364 217 ISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDL 296 (400)
Q Consensus 217 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 296 (400)
.+|..+-.+|...+.+.-|.-.--.+.- .|+ ....++..|...|-+++.+.+++.... --.....+|+-|.-.
T Consensus 200 ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglg--lErAHmGmFTELaIL 272 (624)
T 3lvg_A 200 RTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAIL 272 (624)
T ss_dssp CSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTT--STTCCHHHHHHHHHH
T ss_pred hHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhC--CCchhHHHHHHHHHH
Confidence 7888888888888887766544333332 111 123355667778888888888877662 223466778888777
Q ss_pred HHhcCChHHHHHHHHhc----cCCc------cHHHHHHHHHHHHhcCCHHHHH
Q 048364 297 FGKAGFLEEAYEVIRTM----RLEP------NVIIWGSFLAACKEHKQFDMAE 339 (400)
Q Consensus 297 ~~~~g~~~~a~~~~~~~----~~~p------~~~~~~~l~~~~~~~~~~~~a~ 339 (400)
|++- ++++..+.++-. +++. ....|..++-.|.+-.+++.|.
T Consensus 273 YsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 273 YSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 7765 455555555444 2221 2345777777777777777664
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.034 Score=40.72 Aligned_cols=84 Identities=7% Similarity=-0.022 Sum_probs=50.1
Q ss_pred hHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcC---ChHHHHHHHHhc-cCC-c--cHHHHHHHHHHHHhcCCHHHHHHH
Q 048364 269 EGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG---FLEEAYEVIRTM-RLE-P--NVIIWGSFLAACKEHKQFDMAERV 341 (400)
Q Consensus 269 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~-~~~-p--~~~~~~~l~~~~~~~~~~~~a~~~ 341 (400)
.+.+-|....+. + .++..+...+.-++++.+ +.+++..+|++. ... | +...+-.+.-+|.+.|++++|.+.
T Consensus 16 ~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 16 KFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 344444444422 2 255566666666666666 455677777766 223 4 234445556667777888888888
Q ss_pred HHHHHHcCCCCCCch
Q 048364 342 IKQALRMVKPENDGG 356 (400)
Q Consensus 342 ~~~~~~~~~~~~~~~ 356 (400)
++.+++.. | .+..
T Consensus 94 ~~~lL~ie-P-~n~Q 106 (152)
T 1pc2_A 94 VRGLLQTE-P-QNNQ 106 (152)
T ss_dssp HHHHHHHC-T-TCHH
T ss_pred HHHHHhcC-C-CCHH
Confidence 88888777 6 4433
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.30 E-value=0.018 Score=39.51 Aligned_cols=70 Identities=9% Similarity=0.067 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcC-----CCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCccH
Q 048364 250 NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYD-----LEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNV 319 (400)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~ 319 (400)
+...+..+...+.+.++++.|...|+.+.+... -.+....+..+..+|.+.|++++|...+++. .+.|+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~ 79 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH 79 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 444455566666677777777777766654321 1223456677777777777777777777776 455543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.14 Score=38.52 Aligned_cols=130 Identities=9% Similarity=0.061 Sum_probs=91.2
Q ss_pred HHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCCh
Q 048364 224 CGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFL 303 (400)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 303 (400)
....+.|+++.|.++.+++ -+...|..|.......|+++-|+..|..... +..+.-.|...|+.
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCH
Confidence 3456789999999987765 3788999999999999999999999988862 45566777888888
Q ss_pred HHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHh
Q 048364 304 EEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLML 382 (400)
Q Consensus 304 ~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 382 (400)
++..++-+....+- -++.....+...|+++++.+++.+. + . -+.++ . .....|-.+.|.++.+.+-
T Consensus 77 e~L~kla~iA~~~g---~~n~af~~~l~lGdv~~~i~lL~~~---~-r--~~eA~-~---~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 77 NKLSKMQNIAQTRE---DFGSMLLNTFYNNSTKERSSIFAEG---G-S--LPLAY-A---VAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHTCHHHHHHHHHHT---T-C--HHHHH-H---HHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCc---cHHHHHHHHHHcCCHHHHHHHHHHC---C-C--hHHHH-H---HHHHcCcHHHHHHHHHHhC
Confidence 77666555441111 2455566777899999999998544 3 1 11111 1 2223566788888887763
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.97 E-value=0.043 Score=40.21 Aligned_cols=85 Identities=13% Similarity=0.014 Sum_probs=63.2
Q ss_pred hhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChhhHHHHHHHhhhhcCCCC--ChhhHHHHHHHHHhcCChHHH
Q 048364 232 SEDALSLFEMMQATGVKPNEMTFTGVLTACVHTG---LVDEGRKYFKMIDEEYDLEP--RIQHYGCMVDLFGKAGFLEEA 306 (400)
Q Consensus 232 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a 306 (400)
...+.+.|.+....|. ++..+...+..++++.+ +.++++.+++.+.+. . .| ....+-.+.-+|.+.|++++|
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHH
Confidence 3456666766666554 67777777888888887 666899999988864 2 24 355666678888999999999
Q ss_pred HHHHHhc-cCCccH
Q 048364 307 YEVIRTM-RLEPNV 319 (400)
Q Consensus 307 ~~~~~~~-~~~p~~ 319 (400)
.+.++.+ .+.|+.
T Consensus 91 ~~y~~~lL~ieP~n 104 (152)
T 1pc2_A 91 LKYVRGLLQTEPQN 104 (152)
T ss_dssp HHHHHHHHHHCTTC
T ss_pred HHHHHHHHhcCCCC
Confidence 9999988 777743
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.06 Score=44.13 Aligned_cols=104 Identities=14% Similarity=0.120 Sum_probs=69.8
Q ss_pred hhhHHHHHHHhhhhcCCCCC---hhhHHHHHHHHHhc-----CChHHHHHHHHhc-cCCcc--HHHHHHHHHHHHhc-CC
Q 048364 267 VDEGRKYFKMIDEEYDLEPR---IQHYGCMVDLFGKA-----GFLEEAYEVIRTM-RLEPN--VIIWGSFLAACKEH-KQ 334 (400)
Q Consensus 267 ~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~a~~~~~~~-~~~p~--~~~~~~l~~~~~~~-~~ 334 (400)
...|...+++.. .+.|+ ...|..+...|.+. |+.++|.+.|++. .+.|+ ..++......++.. |+
T Consensus 179 l~~A~a~lerAl---eLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERAC---DLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHH---HHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHH---HhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 345566666666 33555 45788888888884 8999999999888 66663 56666677777774 88
Q ss_pred HHHHHHHHHHHHHcCCCC--CCchHHHHHHHHhhcccchHHHHHHHHHHh
Q 048364 335 FDMAERVIKQALRMVKPE--NDGGVFTLICDLYTMNEKWEGAERVRKLML 382 (400)
Q Consensus 335 ~~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 382 (400)
.+++.+.+++++... |. |+....+ .+.-.+|..+++++.
T Consensus 256 ~~~a~~~L~kAL~a~-p~~~P~~~lan--------~~~q~eA~~LL~~~~ 296 (301)
T 3u64_A 256 RAGFDEALDRALAID-PESVPHNKLLV--------ILSQKRARWLKAHVQ 296 (301)
T ss_dssp HHHHHHHHHHHHHCC-GGGCSSCHHHH--------HHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHcCC-CCCCCChhHHH--------HHHHHHHHHHHHHhH
Confidence 999999999998887 64 3332222 223455666665544
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.36 E-value=1.8 Score=42.02 Aligned_cols=253 Identities=13% Similarity=-0.003 Sum_probs=125.2
Q ss_pred HHcCCChHHHHHHHhhCCC----CChh--hHHHHHHHHHhcCCcchHHHHHHHHHhcCC-CC-----CCHHHHHHHHHHh
Q 048364 91 YSKSGNVCEARDFFERMPL----RNVA--SWSAMIAAYLNAGAYDPGLKLFREMISNEG-LT-----PDQMTIGAVLSGC 158 (400)
Q Consensus 91 ~~~~~~~~~a~~~~~~~~~----~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~~-----p~~~~~~~ll~~~ 158 (400)
....|+.++++.+++.... .+.. .-..+.-+....|..+++..++........ +. +....-.++--+.
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4456777777777776553 1211 222233345556665677777766552221 00 1111111222222
Q ss_pred hcccchhhhhhhhhhhHHHh-ccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCC-CcccHH--HHHHHHHhCCChhh
Q 048364 159 SHLGSVGLLMGKSAHGFIVK-NEWELNEQIATILVDMYAKCGFLKYALMVFELMEER-NVISWT--ALICGSAHRGYSED 234 (400)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~--~l~~~~~~~~~~~~ 234 (400)
+-.|.-++. +...+..+.. .........--+|...+...|+-+....++..+.+. +..... .+.-++...|+.+.
T Consensus 464 a~~GS~~ee-v~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~ 542 (963)
T 4ady_A 464 AAMGSANIE-VYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL 542 (963)
T ss_dssp HSTTCCCHH-HHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG
T ss_pred HhcCCCCHH-HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH
Confidence 222222111 2222222222 211111122223444556677777777776655432 222222 23334456788888
Q ss_pred HHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHh
Q 048364 235 ALSLFEMMQATGVKPNEMTF--TGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRT 312 (400)
Q Consensus 235 a~~~~~~m~~~~~~p~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 312 (400)
+..+.+.+... ..|....- .++.-+|+..|+.....++++.+.. ....++.-...+.-++...|+.+.+.++++.
T Consensus 543 ~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~--d~~d~VRraAViaLGlI~~g~~e~v~rlv~~ 619 (963)
T 4ady_A 543 ADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS--DSNDDVRRAAVIALGFVLLRDYTTVPRIVQL 619 (963)
T ss_dssp GHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTSSSCSSHHHHTTT
T ss_pred HHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc--CCcHHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 88888877764 12222211 2334456778888777778888874 2233333333344455556777667777765
Q ss_pred c--cCCccHHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 048364 313 M--RLEPNVIIWGSFLAACKEHKQF-DMAERVIKQALR 347 (400)
Q Consensus 313 ~--~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~ 347 (400)
+ ...|.+..-..+.-+....|.. .++...+..+..
T Consensus 620 L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 620 LSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp GGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 5 2345554444444455555543 567777777754
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.15 E-value=0.24 Score=46.88 Aligned_cols=55 Identities=11% Similarity=0.032 Sum_probs=50.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHh
Q 048364 326 LAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLML 382 (400)
Q Consensus 326 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 382 (400)
.+.|...|+++.|+.+.++..... | .+-.+|..|+.+|...|+|+.|+-.++.++
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~a-P-seF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELA-L-DSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-S-SCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcC-c-hhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 345667899999999999999998 8 899999999999999999999999999986
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.99 E-value=0.26 Score=35.77 Aligned_cols=99 Identities=9% Similarity=0.067 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHHHhcCCh------hhHHHHHHHhhhhcCCCCChh-hHHHHHHH------HHhcCChHHHHHHHHhc-cC
Q 048364 250 NEMTFTGVLTACVHTGLV------DEGRKYFKMIDEEYDLEPRIQ-HYGCMVDL------FGKAGFLEEAYEVIRTM-RL 315 (400)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~------~~~~g~~~~a~~~~~~~-~~ 315 (400)
|..+|-..+....+.|+. ++...+|++... .++|+.. .|...|.. +...++.++|.++|+.+ .+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 567777777777777888 788888888875 5566431 22222221 23457888888888877 11
Q ss_pred -CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048364 316 -EPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKP 351 (400)
Q Consensus 316 -~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 351 (400)
+-=...|......-.++|+...|.+++.+.+..+ |
T Consensus 90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~-~ 125 (161)
T 4h7y_A 90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG-A 125 (161)
T ss_dssp CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-C
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC-C
Confidence 1115566666666678888888888888888887 6
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.95 E-value=0.58 Score=32.92 Aligned_cols=87 Identities=7% Similarity=-0.010 Sum_probs=50.2
Q ss_pred hhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHH---HHHHHHhc-cCC-c--cHHHHHHHHHHHHhcCCHHHHH
Q 048364 267 VDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEE---AYEVIRTM-RLE-P--NVIIWGSFLAACKEHKQFDMAE 339 (400)
Q Consensus 267 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~-~~~-p--~~~~~~~l~~~~~~~~~~~~a~ 339 (400)
...+.+-|...... +. ++..+-..+.-++.+..+... ++.+++++ ... | .....-.+.-++.+.|++++|.
T Consensus 17 l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 33444445444422 22 555555556666666665554 66666666 222 4 2233444566777888888888
Q ss_pred HHHHHHHHcCCCCCCchH
Q 048364 340 RVIKQALRMVKPENDGGV 357 (400)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~ 357 (400)
+.++.+++.. | .+..+
T Consensus 95 ~~~~~lL~~e-P-~n~QA 110 (126)
T 1nzn_A 95 KYVRGLLQTE-P-QNNQA 110 (126)
T ss_dssp HHHHHHHHHC-T-TCHHH
T ss_pred HHHHHHHHhC-C-CCHHH
Confidence 8888888877 6 44443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.70 E-value=0.76 Score=33.35 Aligned_cols=111 Identities=11% Similarity=0.159 Sum_probs=74.0
Q ss_pred CCcccHHHHHHHHHhCCCh------hhHHHHHHHHHHCCCCCCHHH----HHHH-HH--HHHhcCChhhHHHHHHHhhhh
Q 048364 214 RNVISWTALICGSAHRGYS------EDALSLFEMMQATGVKPNEMT----FTGV-LT--ACVHTGLVDEGRKYFKMIDEE 280 (400)
Q Consensus 214 ~~~~~~~~l~~~~~~~~~~------~~a~~~~~~m~~~~~~p~~~~----~~~l-~~--~~~~~~~~~~a~~~~~~~~~~ 280 (400)
.|..+|-..+...-+.|++ +...++|++.... ++|+... |.-+ +. .+...++.++|.++|+.+.+-
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4677888888888888988 8888888888775 6665321 1111 00 123458899999999988753
Q ss_pred cCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHH
Q 048364 281 YDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLA 327 (400)
Q Consensus 281 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~ 327 (400)
+-.- ...|....+.-.++|++.+|.+++.+. |..| +...+...++
T Consensus 90 -hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~ 136 (161)
T 4h7y_A 90 -CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALR 136 (161)
T ss_dssp -CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHH
T ss_pred -hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 2222 666766777777899999999999887 5445 3334444443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.66 E-value=0.78 Score=32.61 Aligned_cols=137 Identities=9% Similarity=0.050 Sum_probs=96.7
Q ss_pred HHhcCCHHHHHHHHHhccCC-CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 048364 195 YAKCGFLKYALMVFELMEER-NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKY 273 (400)
Q Consensus 195 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 273 (400)
..-.|..++..++..+..++ +..-||-+|.-....-+-+-..++++..-. -.|. ...|+.......
T Consensus 17 ~ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFDi----------s~C~NlKrVi~C 83 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDL----------DKCQNLKSVVEC 83 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCG----------GGCSCTHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhh---hcCc----------HhhhcHHHHHHH
Confidence 44578899999998887764 445566666655566666655665555432 2222 234555555554
Q ss_pred HHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc--cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048364 274 FKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM--RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVK 350 (400)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 350 (400)
+-.+- .+.......+..+..+|+-++-.+++.++ +..|+....-.+..+|.+.|+..++.+++.++.+.|.
T Consensus 84 ~~~~n------~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 84 GVINN------TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHTT------CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHhc------chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 44332 24445666778888999999999999994 6677888888999999999999999999999999984
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.49 E-value=0.11 Score=36.54 Aligned_cols=84 Identities=15% Similarity=0.048 Sum_probs=57.5
Q ss_pred hhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhh---HHHHHHHhhhhcCCCC--ChhhHHHHHHHHHhcCChHHH
Q 048364 232 SEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDE---GRKYFKMIDEEYDLEP--RIQHYGCMVDLFGKAGFLEEA 306 (400)
Q Consensus 232 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a 306 (400)
...+.+.|.+....|. |+..+-..+..++.+..+... ++.+++.+.+. + .| .....-.|.-++.+.|++++|
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-S-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 4455556665555443 677777777778888776665 78888888753 2 23 334455577788899999999
Q ss_pred HHHHHhc-cCCcc
Q 048364 307 YEVIRTM-RLEPN 318 (400)
Q Consensus 307 ~~~~~~~-~~~p~ 318 (400)
.+.++.+ .+.|+
T Consensus 94 ~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 94 LKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHHCTT
T ss_pred HHHHHHHHHhCCC
Confidence 9999888 66663
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=94.37 E-value=0.1 Score=45.59 Aligned_cols=54 Identities=9% Similarity=0.025 Sum_probs=26.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHH
Q 048364 326 LAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLM 381 (400)
Q Consensus 326 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 381 (400)
+..+...|+++++...++.+.... | .+...+..++.++.+.|+..+|.+.|+++
T Consensus 178 ~~~~l~~g~~~~a~~~l~~~~~~~-P-~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 178 AEAEIACGRASAVIAELEALTFEH-P-YREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-T-TCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444455555555555554444 4 44445555555555555555555444443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.98 E-value=1.4 Score=39.06 Aligned_cols=160 Identities=9% Similarity=0.052 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhccC----CC-----cccHHHHHHHHHhCCChhhHHHHHHHHHH----CCCCCCH-
Q 048364 186 QIATILVDMYAKCGFLKYALMVFELMEE----RN-----VISWTALICGSAHRGYSEDALSLFEMMQA----TGVKPNE- 251 (400)
Q Consensus 186 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~----~~~~p~~- 251 (400)
.....|...|...|++.+|.+++..+.. .+ +..+..-+..|...+++..|..++.++.. ....|+.
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk 217 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLK 217 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHH
Confidence 3445688889999999999999988763 11 23566677888899999999999888642 2222322
Q ss_pred -HHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHH----HHHHHHhcCChHHHHHHHHhc---cCCccHHHHH
Q 048364 252 -MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGC----MVDLFGKAGFLEEAYEVIRTM---RLEPNVIIWG 323 (400)
Q Consensus 252 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~g~~~~a~~~~~~~---~~~p~~~~~~ 323 (400)
..+...+..+...+++.+|.+.|..+........+...+.. ++.+..-.+....-..++... ..-++...|.
T Consensus 218 ~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~ 297 (445)
T 4b4t_P 218 LEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQE 297 (445)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHH
Confidence 34566777778889999998888877654333333322222 122222222111112222222 2235677788
Q ss_pred HHHHHHHhc--CCHHHHHHHHHHH
Q 048364 324 SFLAACKEH--KQFDMAERVIKQA 345 (400)
Q Consensus 324 ~l~~~~~~~--~~~~~a~~~~~~~ 345 (400)
.++.+|... .+++.+...+...
T Consensus 298 ~L~k~f~~~~L~~~~~~~~~~~~~ 321 (445)
T 4b4t_P 298 SLVKLFTTNELMRWPIVQKTYEPV 321 (445)
T ss_dssp HHHHHHHHCCSSSHHHHHHHTCSS
T ss_pred HHHHHHHhchHhhhHHHHHHHHHH
Confidence 888888653 3455555554443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.77 E-value=0.57 Score=34.67 Aligned_cols=60 Identities=10% Similarity=0.026 Sum_probs=29.3
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHHC-CCCCCH-------HHHHHHHHHHHhcCChhhHHHHHHHhh
Q 048364 219 WTALICGSAHRGYSEDALSLFEMMQAT-GVKPNE-------MTFTGVLTACVHTGLVDEGRKYFKMID 278 (400)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~ 278 (400)
+..-+..+...|.++.|+-+.+.+... +..|+. .++..+.+++...+++..|...|++..
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 333445555566666665555544332 112221 133444555555666666666665543
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=93.54 E-value=1 Score=29.96 Aligned_cols=63 Identities=8% Similarity=0.148 Sum_probs=49.8
Q ss_pred ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHH
Q 048364 231 YSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295 (400)
Q Consensus 231 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 295 (400)
+.-++.+-++.+....+.|++....+.+++|.+.+++..|.++++-++.+.+.. ..+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHH
Confidence 445666777777778889999999999999999999999999999998765433 456776654
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=93.20 E-value=6.7 Score=38.21 Aligned_cols=301 Identities=8% Similarity=-0.004 Sum_probs=160.2
Q ss_pred HhCCHHHHHHHHhhCCCC----Chhh--HHHHHHHHHcCCChHHHHHHHhhCC-CCC----------hhhHHHHHHHHHh
Q 048364 62 VVTSFGFARKLFDELPER----NAVT--WNTMIKGYSKSGNVCEARDFFERMP-LRN----------VASWSAMIAAYLN 124 (400)
Q Consensus 62 ~~g~~~~a~~~~~~~~~~----~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~-~~~----------~~~~~~l~~~~~~ 124 (400)
..|+.++++.+++..... +..+ =..+.-+.+..|..+++..++.... .++ ...-.++.-+.+-
T Consensus 386 h~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~ 465 (963)
T 4ady_A 386 HKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAA 465 (963)
T ss_dssp TSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHS
T ss_pred ccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHh
Confidence 788888999999887652 2222 2223344566676667777766543 222 1112233333333
Q ss_pred cCC-cchHHHHHHHHHhcCCCCCCHHHHHHH--HHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCH
Q 048364 125 AGA-YDPGLKLFREMISNEGLTPDQMTIGAV--LSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFL 201 (400)
Q Consensus 125 ~g~-~~~a~~~~~~m~~~~~~~p~~~~~~~l--l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 201 (400)
.|. -+++.+.+..+..... +.......+ -..+.-.|+.+. ...++..+.+.. .-+..-...+.-++...|+.
T Consensus 466 ~GS~~eev~e~L~~~L~dd~--~~~~~~AalALGli~vGTgn~~a--i~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 466 MGSANIEVYEALKEVLYNDS--ATSGEAAALGMGLCMLGTGKPEA--IHDMFTYSQETQ-HGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp TTCCCHHHHHHHHHHHHTCC--HHHHHHHHHHHHHHHTTCCCHHH--HHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCG
T ss_pred cCCCCHHHHHHHHHHHhcCC--HHHHHHHHHHHhhhhcccCCHHH--HHHHHHHHhccC-cHHHHHHHHHHHHhhhCCCh
Confidence 443 3466777777662221 111112222 223445555555 666666665432 22233333444445567888
Q ss_pred HHHHHHHHhccC-CCccc-HH---HHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHH
Q 048364 202 KYALMVFELMEE-RNVIS-WT---ALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKM 276 (400)
Q Consensus 202 ~~A~~~~~~~~~-~~~~~-~~---~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 276 (400)
+.+..+.+.+.. .++.. |. ++..+|+..|+......+++.+.... ..+......+.-++...|+.+.+.++++.
T Consensus 541 e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~ 619 (963)
T 4ady_A 541 ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQL 619 (963)
T ss_dssp GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 888888777764 33332 33 34456788899887777998887652 22333333333344556787888888887
Q ss_pred hhhhcCCCCChhhHHHHHHHHHhcCCh-HHHHHHHHhccCCccHHHHHHHHHHHHh--cC-------CHHHHHHHHHHHH
Q 048364 277 IDEEYDLEPRIQHYGCMVDLFGKAGFL-EEAYEVIRTMRLEPNVIIWGSFLAACKE--HK-------QFDMAERVIKQAL 346 (400)
Q Consensus 277 ~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~p~~~~~~~l~~~~~~--~~-------~~~~a~~~~~~~~ 346 (400)
+.+ ...|.+..-..+.-+....|.. .++.+++..+--.+|..+-...+.++.. .| ++....+.+....
T Consensus 620 L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~ 697 (963)
T 4ady_A 620 LSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVI 697 (963)
T ss_dssp GGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHH
T ss_pred HHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHH
Confidence 764 2345554444455555555554 6788888888435555544444444432 22 3333444444444
Q ss_pred HcCCCCCCchHHHHHHHHhhcccc
Q 048364 347 RMVKPENDGGVFTLICDLYTMNEK 370 (400)
Q Consensus 347 ~~~~~~~~~~~~~~l~~~~~~~g~ 370 (400)
......++...-..+..+....|.
T Consensus 698 ~dk~~d~~~~fga~iAqGll~aG~ 721 (963)
T 4ady_A 698 TNKHQEGLAKFGACVAQGIMNAGG 721 (963)
T ss_dssp HCSSSCHHHHHHHHHHHHHHTTGG
T ss_pred hcccccHHHHHHHHHHHHHHhcCC
Confidence 322121234444555555555553
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=93.20 E-value=1.9 Score=43.61 Aligned_cols=189 Identities=7% Similarity=0.050 Sum_probs=99.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCC----------------------
Q 048364 191 LVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK---------------------- 248 (400)
Q Consensus 191 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~---------------------- 248 (400)
++..+...+..+.+.++..-... ++...-.+..++...|++++|...|++... |+.
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~~~~ 895 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYHHQ 895 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTTTSC
T ss_pred HHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccccccccc
Confidence 44445555666655554444332 333334455666777777777777755311 110
Q ss_pred -CCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCC---hhhHHHHHHHHHhcCChHHHHHHHHhc-cCCccHHHHH
Q 048364 249 -PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR---IQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNVIIWG 323 (400)
Q Consensus 249 -p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~~~~~ 323 (400)
.-..-|..++..+.+.+.++.+.++-+...+..+..++ ...|..+.+++...|++++|...+-.+ ...--.....
T Consensus 896 ~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr 975 (1139)
T 4fhn_B 896 NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLL 975 (1139)
T ss_dssp CSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHH
Confidence 01134566667777777777777776666543221111 124667777777788888887777666 2122334555
Q ss_pred HHHHHHHhcCCH------------HHHHHHHHHHH-HcCCCCCCchHHHHHHHHhhcccchHHHHHH-HHHH
Q 048364 324 SFLAACKEHKQF------------DMAERVIKQAL-RMVKPENDGGVFTLICDLYTMNEKWEGAERV-RKLM 381 (400)
Q Consensus 324 ~l~~~~~~~~~~------------~~a~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m 381 (400)
.|+...+..|.. ++..+++..-. ....+...+..|..|-..+...|++-.|-.+ |+..
T Consensus 976 ~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~ 1047 (1139)
T 4fhn_B 976 DFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKL 1047 (1139)
T ss_dssp HHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHH
Confidence 566655555543 33333333222 1211212334455555555666777666553 4443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.18 E-value=0.5 Score=44.74 Aligned_cols=121 Identities=12% Similarity=0.118 Sum_probs=79.8
Q ss_pred HHHHHHHhcccch-hHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhC-CHHHHHHHHhhC-----------CCCChhh-
Q 048364 19 ILHILKSCTHFNN-LTVIHHLHSHILKLGFISHVYVATSLLHEY-VVT-SFGFARKLFDEL-----------PERNAVT- 83 (400)
Q Consensus 19 ~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g-~~~~a~~~~~~~-----------~~~~~~~- 83 (400)
...+++.+...|+ .+.|..+++.+.+..+..+......++..+ ..+ +--+|.+++.+. ...+...
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 3455666666666 588999999998876544444444555555 332 222344433332 2222211
Q ss_pred ----H-HHH----HHHHHcCCChHHHHHHHhhCC--CC-ChhhHHHHHHHHHhcCCcchHHHHHHHHH
Q 048364 84 ----W-NTM----IKGYSKSGNVCEARDFFERMP--LR-NVASWSAMIAAYLNAGAYDPGLKLFREMI 139 (400)
Q Consensus 84 ----~-~~l----~~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 139 (400)
+ ..| .+.+...|+++-|+++-++.. .| +-.+|..|..+|...|+++.|+-.++.+.
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 0 112 345677999999999999865 45 56799999999999999999999998883
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.34 E-value=5.7 Score=35.22 Aligned_cols=251 Identities=9% Similarity=0.054 Sum_probs=139.7
Q ss_pred cCCcchHHHHHHHHHhcCC----CCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHh-ccccchHH--HHHHHHHHHHh
Q 048364 125 AGAYDPGLKLFREMISNEG----LTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK-NEWELNEQ--IATILVDMYAK 197 (400)
Q Consensus 125 ~g~~~~a~~~~~~m~~~~~----~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~--~~~~l~~~~~~ 197 (400)
.|+++.|++.+..+.+... ..........++..|...++++. ..+.+..+.+ +|..+... ....++.....
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~--l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDD--LNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHH--HHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHH--HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhc
Confidence 3788999998888874322 33445668888999999999988 6555555443 33222221 12223333333
Q ss_pred cCCHHH--HHHHHHhccCC-Cc---------ccHHHHHHHHHhCCChhhHHHHHHHHHHC--CCCCC---HHHHHHHHHH
Q 048364 198 CGFLKY--ALMVFELMEER-NV---------ISWTALICGSAHRGYSEDALSLFEMMQAT--GVKPN---EMTFTGVLTA 260 (400)
Q Consensus 198 ~g~~~~--A~~~~~~~~~~-~~---------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~p~---~~~~~~l~~~ 260 (400)
....+. -..+.+....- +. .....|...+...|++.+|..++.++... |.... ...+...++.
T Consensus 107 ~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 107 SKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp HCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 333322 22333333221 11 12345778888999999999999988643 32222 2356667788
Q ss_pred HHhcCChhhHHHHHHHhhhhc-CC--CCC--hhhHHHHHHHHHhcCChHHHHHHHHhc----cCCccHHHHHHH----HH
Q 048364 261 CVHTGLVDEGRKYFKMIDEEY-DL--EPR--IQHYGCMVDLFGKAGFLEEAYEVIRTM----RLEPNVIIWGSF----LA 327 (400)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~~-~~--~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~p~~~~~~~l----~~ 327 (400)
|...+++..|..++.++.... .. .|+ ...+...+..+...+++.+|.+.|.+. ....|...+..+ +.
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~ 266 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVY 266 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHH
Confidence 889999999999988875321 11 222 234566777788888999888888777 111122222222 12
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcc--cchHHHHHHH
Q 048364 328 ACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN--EKWEGAERVR 378 (400)
Q Consensus 328 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~ 378 (400)
+..-.+....-..++......... ++...+..++.+|... .+|+...+.+
T Consensus 267 ~~iLa~~~~~~~~ll~~~~~~~~~-~~l~~~~~L~k~f~~~~L~~~~~~~~~~ 318 (445)
T 4b4t_P 267 FLVLSPYGNLQNDLIHKIQNDNNL-KKLESQESLVKLFTTNELMRWPIVQKTY 318 (445)
T ss_dssp HHHHSSCSSTTHHHHHSHHHHSSC-HHHHHHHHHHHHHHHCCSSSHHHHHHHT
T ss_pred HHHhCCCCchHHHHHHHHhhcccc-cccHHHHHHHHHHHhchHhhhHHHHHHH
Confidence 222233333333444444333311 3445666666666533 3444444433
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=92.09 E-value=5.5 Score=34.51 Aligned_cols=57 Identities=11% Similarity=0.013 Sum_probs=26.2
Q ss_pred HHHHHHhcCChhhHHHHHHHhhhhcCCCCC----hhhHHHHHHHHHhcCChHHHHHHHHhc
Q 048364 257 VLTACVHTGLVDEGRKYFKMIDEEYDLEPR----IQHYGCMVDLFGKAGFLEEAYEVIRTM 313 (400)
Q Consensus 257 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~ 313 (400)
++..|...|++.+|.+++..+.+...-..+ ..++..-++.|...+++.++...+...
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a 165 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSA 165 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 444555555555555555555433221111 122333344455555555555555444
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=92.09 E-value=1.3 Score=31.84 Aligned_cols=71 Identities=11% Similarity=0.057 Sum_probs=48.9
Q ss_pred CCChhhHHHHHHHHHhcCChH---HHHHHHHhc-cCCc--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCch
Q 048364 284 EPRIQHYGCMVDLFGKAGFLE---EAYEVIRTM-RLEP--NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGG 356 (400)
Q Consensus 284 ~~~~~~~~~l~~~~~~~g~~~---~a~~~~~~~-~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 356 (400)
.|+..+--.+.-++.+..+.+ ++..+++++ ...| .....-.+.-++.+.|++++|.++.+.+++.. | .+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e-P-~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE-R-NNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC-C-CCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-C-CcHH
Confidence 566666666667777766544 567777777 3334 33344556678888999999999999999888 7 4433
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.99 E-value=1.6 Score=32.29 Aligned_cols=111 Identities=10% Similarity=-0.006 Sum_probs=63.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccC-----CCc-------ccHHHHHHHHHhCCChhhHHHHHHHHHHCC-CCCCH-HHH
Q 048364 189 TILVDMYAKCGFLKYALMVFELMEE-----RNV-------ISWTALICGSAHRGYSEDALSLFEMMQATG-VKPNE-MTF 254 (400)
Q Consensus 189 ~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~-~~~ 254 (400)
-.-+..+...|.++.|+-+.+.+.. ++. .++..+.+++...|++..|...|++..+.. .-+.. .+.
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~ 103 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVR 103 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 3445667788899998888776553 332 145667788899999999999999875421 11111 111
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc
Q 048364 255 TGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313 (400)
Q Consensus 255 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 313 (400)
..+- . ..... ......++...---+..||.+.|++++|+.+++.+
T Consensus 104 ~~~~-~--~ss~p-----------~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 104 PSTG-N--SASTP-----------QSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred cccc-c--cCCCc-----------ccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 1110 0 00000 00012233344444777888888888888888876
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=91.04 E-value=2.2 Score=30.14 Aligned_cols=63 Identities=8% Similarity=0.149 Sum_probs=50.0
Q ss_pred ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHH
Q 048364 231 YSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295 (400)
Q Consensus 231 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 295 (400)
|.-+..+-++.+....+.|++......+++|.+.+++..|.++|+-++.+.+. ...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~--~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC--chhhHHHHHH
Confidence 34456666777777788999999999999999999999999999999876543 3556777654
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=91.02 E-value=2.1 Score=43.30 Aligned_cols=124 Identities=8% Similarity=-0.060 Sum_probs=82.3
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc--cCCc----------------
Q 048364 256 GVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM--RLEP---------------- 317 (400)
Q Consensus 256 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~p---------------- 317 (400)
.++..+...+..+.+..+..... .++..--.+..+|...|++++|.+.|++. ++.+
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~------~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN------SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC------CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc------CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 45555666677766665444332 23333344667788889999999988877 2111
Q ss_pred -------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCc----hHHHHHHHHhhcccchHHHHHHHHHHhcccc
Q 048364 318 -------NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG----GVFTLICDLYTMNEKWEGAERVRKLMLNQNV 386 (400)
Q Consensus 318 -------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 386 (400)
-..-|..++..+-+.+.++.+.++.+.+++...+ .+. ..|..+...+...|+|++|...+-.+.+...
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~-~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~ 969 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKET-DDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL 969 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCS-CCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccC-CChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence 1123667778888888888888888888876522 332 2567778888888999998888776665443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=90.86 E-value=0.69 Score=32.72 Aligned_cols=71 Identities=11% Similarity=0.054 Sum_probs=47.6
Q ss_pred CCChhhHHHHHHHHHhcCCh---HHHHHHHHhc-cCCc--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCch
Q 048364 284 EPRIQHYGCMVDLFGKAGFL---EEAYEVIRTM-RLEP--NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGG 356 (400)
Q Consensus 284 ~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~-~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 356 (400)
.|+..+--.+.-++.+..+. .+++.+++++ ...| ....+-.+.-++.+.|++++|.+..+.+++.. | .+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e-P-~N~Q 113 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE-R-NNKQ 113 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC-T-TCHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC-C-CCHH
Confidence 45555555566666666554 4577777777 3345 23455566778888888888888888888888 7 4443
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=90.83 E-value=6.3 Score=32.82 Aligned_cols=180 Identities=12% Similarity=0.066 Sum_probs=98.9
Q ss_pred HhCCHHHHHHHHhhCCCCChhhHHHHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcchHHHH----HHH
Q 048364 62 VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKL----FRE 137 (400)
Q Consensus 62 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~----~~~ 137 (400)
..|++=+|.+.+ .++..-|.+.+++++|++++..- ...+.+.|+...|.++ .+.
T Consensus 25 ~~G~yYEAhQ~~-----------Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev 82 (312)
T 2wpv_A 25 KAGDYYEAHQTL-----------RTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEV 82 (312)
T ss_dssp HHTCHHHHHHHH-----------HHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hccChHHHHHHH-----------HHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHH
Confidence 556666666644 45566677777888887776432 2334455665555553 333
Q ss_pred HHhcCCCCCCHHHHHHHHHHhhcccchhh---hhhhhhhhHHHhccc--cchHHHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 048364 138 MISNEGLTPDQMTIGAVLSGCSHLGSVGL---LMGKSAHGFIVKNEW--ELNEQIATILVDMYAKCGFLKYALMVFELME 212 (400)
Q Consensus 138 m~~~~~~~p~~~~~~~ll~~~~~~~~~~~---~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 212 (400)
.. +.+++++......++..+......+. ....+...+-.+.|- .-++.....+...|.+.|++.+|+..|-.-.
T Consensus 83 ~~-~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~ 161 (312)
T 2wpv_A 83 YD-LAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT 161 (312)
T ss_dssp HH-HTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HH-HcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC
Confidence 33 55667776666666665544332211 012333333333332 2367788889999999999999998876332
Q ss_pred CCCcccHHHHHHHHHhC---CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhh
Q 048364 213 ERNVISWTALICGSAHR---GYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDE 279 (400)
Q Consensus 213 ~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 279 (400)
..+...+..++.-+... |...++ +...-..++ -|.-.++...|..+++...+
T Consensus 162 ~~s~~~~a~~l~~w~~~~~~~~~~e~--------------dlf~~RaVL-~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 162 HDSMIKYVDLLWDWLCQVDDIEDSTV--------------AEFFSRLVF-NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCHHHH--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhcCCCCcchH--------------HHHHHHHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 22344444444333222 322221 111122222 24457888888888876654
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=90.80 E-value=0.93 Score=39.44 Aligned_cols=65 Identities=12% Similarity=0.107 Sum_probs=41.7
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc--------cCCccHHH
Q 048364 255 TGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM--------RLEPNVII 321 (400)
Q Consensus 255 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--------~~~p~~~~ 321 (400)
..++.++...|+.+++...+..+... .+.+...+..+|.+|.+.|+..+|++.|+.. |+.|...+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~--~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34555666677777777777666642 2335566777777777777777777776654 56665543
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=89.52 E-value=8.6 Score=32.33 Aligned_cols=150 Identities=10% Similarity=0.068 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHHH----HHHHHHCCCCCCHHHHHHHHHHH
Q 048364 186 QIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL----FEMMQATGVKPNEMTFTGVLTAC 261 (400)
Q Consensus 186 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~m~~~~~~p~~~~~~~l~~~~ 261 (400)
.+|.++..=|.+.+++++|.+++-.- ...+.+.|+...|.++ ++-..+.++++|......++..+
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 45556667788889999988876442 2345566666544443 35555667788887777777776
Q ss_pred HhcCChhh-HHHHHHHhhh---hcC--CCCChhhHHHHHHHHHhcCChHHHHHHHHhccCCccHHHHHH-----------
Q 048364 262 VHTGLVDE-GRKYFKMIDE---EYD--LEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGS----------- 324 (400)
Q Consensus 262 ~~~~~~~~-a~~~~~~~~~---~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~~~~~~~----------- 324 (400)
.....-+- =..+.+.+.+ +.| ..-++.....+...|.+.+++.+|..-|- .+-.+....+..
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~~ 183 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDES 183 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSCG
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcCC
Confidence 65543211 1222222221 122 23366677778888888888888877663 122222222222
Q ss_pred ---------HHHHHHhcCCHHHHHHHHHHHHH
Q 048364 325 ---------FLAACKEHKQFDMAERVIKQALR 347 (400)
Q Consensus 325 ---------l~~~~~~~~~~~~a~~~~~~~~~ 347 (400)
.+--|...++...|..+++...+
T Consensus 184 ~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 184 HTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 22234556688888887766554
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=89.38 E-value=3.3 Score=27.43 Aligned_cols=62 Identities=18% Similarity=0.120 Sum_probs=43.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHH
Q 048364 191 LVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFT 255 (400)
Q Consensus 191 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 255 (400)
-+..+.+.|++++|..+.+...-||...|-++.. .+.|..+++..-+.++...| .|....|.
T Consensus 45 R~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 45 RISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred HHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 3455678888888888888888888888877643 47787787777777777665 34444443
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=89.37 E-value=3.4 Score=27.54 Aligned_cols=57 Identities=21% Similarity=0.339 Sum_probs=42.0
Q ss_pred HHHHHHHHhc---cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHH
Q 048364 304 EEAYEVIRTM---RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLIC 362 (400)
Q Consensus 304 ~~a~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 362 (400)
-+..+-++.+ .+.|+..+..+.+++|.+.+++..|.++++-++.+-.. ...+|..++
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~--~~~iY~~~l 86 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC--chhhHHHHH
Confidence 3444444444 78899999999999999999999999999988877633 345566554
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=89.00 E-value=3.6 Score=27.30 Aligned_cols=62 Identities=18% Similarity=0.147 Sum_probs=41.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHH
Q 048364 191 LVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFT 255 (400)
Q Consensus 191 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 255 (400)
-+..+.+.|++++|..+.+...-||...|-++.. .+.|..+++..-+.++...| .|....|.
T Consensus 46 R~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 46 RLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC-CHHHHHHH
T ss_pred HHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 3445667888888888888888788887776643 46677777777776666654 34444443
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.89 E-value=4.9 Score=30.82 Aligned_cols=49 Identities=10% Similarity=0.114 Sum_probs=29.5
Q ss_pred CChHHHHHHHHhc---cCC-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 301 GFLEEAYEVIRTM---RLE-PNVIIWGSFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 301 g~~~~a~~~~~~~---~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
+...++.++|..| ++- --...|......+-..|++.+|..+|+..++.+
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 3355666666665 222 234456666666666777777777777776666
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=88.80 E-value=9.7 Score=32.01 Aligned_cols=167 Identities=16% Similarity=0.113 Sum_probs=85.3
Q ss_pred HHHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcchHHHHH----HHHHhcCCCCCCHHHHHHHHHHhhc
Q 048364 85 NTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLF----REMISNEGLTPDQMTIGAVLSGCSH 160 (400)
Q Consensus 85 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~----~~m~~~~~~~p~~~~~~~ll~~~~~ 160 (400)
.++..-|.+.+++++|++++..- ...+.+.|+...|.++. +... +.++++|......++..+..
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~-~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFR-QAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHH-HHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHh
Confidence 44455566777777777765331 22234444444444333 2222 44556666555555555544
Q ss_pred ccchhh---hhhhhhhhHHHhcc--ccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhH
Q 048364 161 LGSVGL---LMGKSAHGFIVKNE--WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDA 235 (400)
Q Consensus 161 ~~~~~~---~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 235 (400)
....+. ....+...+-.+.| ..-++.....+...|.+.+++.+|+..|-.-.++.+..|..++.-+...+...++
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~ 186 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTA 186 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGH
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccH
Confidence 432111 01222333333333 2336677788899999999999999888432222234554444333333222111
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhh
Q 048364 236 LSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMID 278 (400)
Q Consensus 236 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 278 (400)
+...-..++ -|.-.++...|..+++...
T Consensus 187 --------------dlfiaRaVL-~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 187 --------------PLYCARAVL-PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp --------------HHHHHHHHH-HHHHTTCHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHH-HHHHhCCHHHHHHHHHHHH
Confidence 222222333 3455678888877665554
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.65 E-value=5.1 Score=35.32 Aligned_cols=108 Identities=10% Similarity=-0.019 Sum_probs=65.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhhhc-CCCCChhhHHHHHHHHHhcCChHHHHHHHHhc------cCCccHHH--HH
Q 048364 253 TFTGVLTACVHTGLVDEGRKYFKMIDEEY-DLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM------RLEPNVII--WG 323 (400)
Q Consensus 253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~------~~~p~~~~--~~ 323 (400)
+...+...+.+.|+++.|.+.+.++.... +...-...+-.+++.+...+++..+...+.+. +-.|+... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 56667777888888888888888777532 12223455667777777888888887777776 22233321 11
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHH
Q 048364 324 SFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361 (400)
Q Consensus 324 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 361 (400)
.-...+...+++..|...|-+..... .......+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~-~~~e~~~~~~~ 249 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATF-TSIELTSYESI 249 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHS-CCSCHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccC-CccchhhHHHH
Confidence 11222345677888888887777665 32333344333
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=87.97 E-value=5.3 Score=28.28 Aligned_cols=73 Identities=16% Similarity=-0.013 Sum_probs=49.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCC---hhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCccH
Q 048364 246 GVKPNEMTFTGVLTACVHTGL---VDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNV 319 (400)
Q Consensus 246 ~~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~ 319 (400)
+-.|+..|--....++.+..+ ..+++.+++.+.+. +..-....+-.|.-++.+.|++++|.+..+.+ .+.|+-
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 445666666666667776654 44677888887754 31113455566777888999999999998888 667753
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=87.59 E-value=6.6 Score=31.73 Aligned_cols=114 Identities=10% Similarity=0.056 Sum_probs=63.3
Q ss_pred HHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCCh----hhHHHHHHHHHh
Q 048364 224 CGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRI----QHYGCMVDLFGK 299 (400)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~ 299 (400)
..+.+.|+.++++.....-++.. +-|...-..++.-+|-.|+++.|.+-++...+- .|+. ..|..+|++=
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~aE-- 78 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAA-- 78 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHH--
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHHH--
Confidence 34566777777777777766653 336666667777777788888887777766632 3332 2333333321
Q ss_pred cCChHHHH-HHHHhc---c--CCccHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHcC
Q 048364 300 AGFLEEAY-EVIRTM---R--LEPNVIIWGSFLAAC--KEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 300 ~g~~~~a~-~~~~~~---~--~~p~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~ 349 (400)
... ++|..- + -.|.. -...++.+. ...|+.++|..+-.++.+.-
T Consensus 79 -----~~R~~vfaG~~~P~~~g~~~~-w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~a 130 (273)
T 1zbp_A 79 -----QARKDFAQGAATAKVLGENEE-LTKSLVSFNLSMVSQDYEQVSELALQIEELR 130 (273)
T ss_dssp -----HHHHHHTTSCCCEECCCSCHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred -----HHHHHHHcCCCCCCCCCCCHH-HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC
Confidence 111 122211 0 01222 233344443 34577788877777777665
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=87.53 E-value=8 Score=29.52 Aligned_cols=54 Identities=9% Similarity=0.073 Sum_probs=23.3
Q ss_pred hhCCCCChhhHHHHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHHhcCC
Q 048364 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGA 127 (400)
Q Consensus 74 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~ 127 (400)
+.+..++...-...+.++.+.++.+....+.+.+..++...-...+.++.+.|+
T Consensus 52 ~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 105 (201)
T 3ltj_A 52 KALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGD 105 (201)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred HHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 333334444444444444444444333333333444444444444444444443
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=87.23 E-value=14 Score=32.01 Aligned_cols=90 Identities=10% Similarity=-0.078 Sum_probs=50.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccC----CCc-----ccHHHHHHHHHhCCChhhHHHHHHHHHHC--CCCCCHHHHHHH-
Q 048364 190 ILVDMYAKCGFLKYALMVFELMEE----RNV-----ISWTALICGSAHRGYSEDALSLFEMMQAT--GVKPNEMTFTGV- 257 (400)
Q Consensus 190 ~l~~~~~~~g~~~~A~~~~~~~~~----~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~l- 257 (400)
.++..|...|++.+|.+++.++.+ .|. ..|-.-+..|...++..++...+...... .+.|++.....+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 567777777888887777766653 121 23444556677777777777777665432 122333222111
Q ss_pred ---HHHHH-hcCChhhHHHHHHHhhh
Q 048364 258 ---LTACV-HTGLVDEGRKYFKMIDE 279 (400)
Q Consensus 258 ---~~~~~-~~~~~~~a~~~~~~~~~ 279 (400)
...+. ..+++..|...|-+..+
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 11234 56777777776655543
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=86.78 E-value=9.2 Score=29.45 Aligned_cols=13 Identities=15% Similarity=0.005 Sum_probs=5.0
Q ss_pred HHHHHHHHHHhcC
Q 048364 253 TFTGVLTACVHTG 265 (400)
Q Consensus 253 ~~~~l~~~~~~~~ 265 (400)
.-...+.++.+.+
T Consensus 159 vr~~a~~aL~~~~ 171 (211)
T 3ltm_A 159 VRQSAADALGEIG 171 (211)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC
Confidence 3333333444333
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.89 E-value=13 Score=32.65 Aligned_cols=96 Identities=7% Similarity=-0.069 Sum_probs=60.1
Q ss_pred cHHHHHHHHHhCCChhhHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHH---
Q 048364 218 SWTALICGSAHRGYSEDALSLFEMMQATG--VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGC--- 292 (400)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--- 292 (400)
++..+...|.+.|+++.|.+.|.++...- ..--...+..+++.+...+++..+...++++.....-.++....+.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 56667777888888888888888877642 2223356667777777888888888888777543222233222211
Q ss_pred -HHHHHHhcCChHHHHHHHHhc
Q 048364 293 -MVDLFGKAGFLEEAYEVIRTM 313 (400)
Q Consensus 293 -l~~~~~~~g~~~~a~~~~~~~ 313 (400)
-+..+...+++..|.+.|-+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHH
Confidence 122334567788887777665
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=85.53 E-value=7.8 Score=27.46 Aligned_cols=49 Identities=20% Similarity=0.370 Sum_probs=40.3
Q ss_pred hccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHH
Q 048364 312 TMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLIC 362 (400)
Q Consensus 312 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 362 (400)
.+++.|+..+....+++|.+.+|+..|.++++-++.+-.+ ...+|..++
T Consensus 81 ~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~--~~~iY~y~l 129 (152)
T 2y69_E 81 GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVI 129 (152)
T ss_dssp TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHH
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC--chhhHHHHH
Confidence 3488899999999999999999999999999999887733 455676655
|
| >4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A | Back alignment and structure |
|---|
Probab=84.71 E-value=9.5 Score=27.77 Aligned_cols=51 Identities=4% Similarity=-0.042 Sum_probs=29.3
Q ss_pred HHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhcccccc
Q 048364 338 AERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRK 388 (400)
Q Consensus 338 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 388 (400)
+..+|..|...++-...+..|...+..+...|++++|.++++.=++.+-+|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 556666666665433445555555555666666666666666555554444
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=84.47 E-value=12 Score=28.75 Aligned_cols=78 Identities=10% Similarity=0.069 Sum_probs=34.4
Q ss_pred chhhhhHHHHHH-HhCCHHHHHHHHhhCCCCChhhHHHHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHHhcCC
Q 048364 50 HVYVATSLLHEY-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGA 127 (400)
Q Consensus 50 ~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~ 127 (400)
+..+-...+..+ ..|..+....+.+.+..++...-...+.++.+.++.+....+.+.+..++...-...+.++.+.|+
T Consensus 32 ~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~ 110 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGD 110 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 333333344444 444433333334444444444444445555555544333333344444444444444444444444
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=83.17 E-value=11 Score=27.13 Aligned_cols=72 Identities=15% Similarity=-0.044 Sum_probs=50.6
Q ss_pred CCCCHHHHHHHHHHHHhcCC---hhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCccH
Q 048364 247 VKPNEMTFTGVLTACVHTGL---VDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNV 319 (400)
Q Consensus 247 ~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~ 319 (400)
-.|+..+--.+..++.+..+ ..+++.+++.+.+. +..-.....-.|.-++.+.|++++|.++.+.+ .+.|+-
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 35677776667777777665 44678888888753 22223445556777899999999999999988 667743
|
| >2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A | Back alignment and structure |
|---|
Probab=82.64 E-value=13 Score=27.56 Aligned_cols=32 Identities=9% Similarity=0.239 Sum_probs=20.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 318 NVIIWGSFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 318 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
-...|......+-..|++.+|..+|+..++.+
T Consensus 95 ~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 95 LAQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 34455666666666677777777777766666
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=82.36 E-value=3.2 Score=33.56 Aligned_cols=56 Identities=20% Similarity=0.348 Sum_probs=41.6
Q ss_pred HHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048364 295 DLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKP 351 (400)
Q Consensus 295 ~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 351 (400)
....+.|.+++|++....- +-.| |...-..++..+|-.|+++.|.+-++...+.. |
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~-p 62 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-P 62 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-G
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-c
Confidence 3456778888888777665 4445 56666777888888888888888888888887 5
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=81.11 E-value=16 Score=27.75 Aligned_cols=56 Identities=11% Similarity=0.055 Sum_probs=29.3
Q ss_pred HhhCCCCChhhHHHHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHHhcCCc
Q 048364 73 FDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128 (400)
Q Consensus 73 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 128 (400)
++.+..+|...-...+..+.+.+..+....+.+.+..++...-...+.++.+.|..
T Consensus 20 i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~ 75 (201)
T 3ltj_A 20 IKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE 75 (201)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG
T ss_pred HHHhcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH
Confidence 33444455555555555555555544444455555555555555555555555543
|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=80.01 E-value=13 Score=30.02 Aligned_cols=14 Identities=7% Similarity=0.076 Sum_probs=6.7
Q ss_pred HhCCHHHHHHHHhh
Q 048364 62 VVTSFGFARKLFDE 75 (400)
Q Consensus 62 ~~g~~~~a~~~~~~ 75 (400)
..|+.+-+..+++.
T Consensus 48 ~~g~~~~v~~Ll~~ 61 (285)
T 1wdy_A 48 QMSREDIVELLLRH 61 (285)
T ss_dssp HTTCHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHc
Confidence 44555444444443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 400 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.92 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.67 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.64 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.35 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.28 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.28 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.26 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.23 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.16 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.16 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.12 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.11 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.03 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.83 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.81 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.78 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.77 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.76 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.75 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.73 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.72 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.71 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.71 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.58 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.56 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.49 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.43 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.39 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.33 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.29 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.28 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.25 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.24 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.22 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.2 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.16 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.16 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.16 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.11 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.07 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.03 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.99 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.9 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.84 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.78 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.74 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.72 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.7 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.69 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.68 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.66 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.51 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.3 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.99 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.95 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.25 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.39 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.31 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 93.51 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 93.49 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 92.3 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 87.53 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 87.22 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=1.4e-21 Score=171.12 Aligned_cols=351 Identities=11% Similarity=0.055 Sum_probs=272.5
Q ss_pred HHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHcCCCh
Q 048364 22 ILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPE--R-NAVTWNTMIKGYSKSGNV 97 (400)
Q Consensus 22 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~ 97 (400)
+...+.+.|++++|.+.++++++..+. +...+..+...+ ..|++++|...|++..+ | +..+|..+..++.+.|++
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccc
Confidence 345566789999999999999886533 566777788888 99999999999998863 3 567889999999999999
Q ss_pred HHHHHHHhhCC---CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhh
Q 048364 98 CEARDFFERMP---LRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHG 174 (400)
Q Consensus 98 ~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~ 174 (400)
++|++.+.... ..+...+..........+....+........ ... .................+.... +.....
T Consensus 84 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 159 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSAL-QYN-PDLYCVRSDLGNLLKALGRLEE--AKACYL 159 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHH-HHC-TTCTHHHHHHHHHHHTTSCHHH--HHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccc-ccc-cccccccccccccccccchhhh--hHHHHH
Confidence 99999998876 3344555566666667777777777776665 222 2233333444444445555544 444444
Q ss_pred HHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCH
Q 048364 175 FIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE--R-NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNE 251 (400)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 251 (400)
...... +.+...+..+...+...|++++|...+++..+ | +...|..+...+...|++++|...+++....+ +.+.
T Consensus 160 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 237 (388)
T d1w3ba_ 160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred HhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHH
Confidence 444333 23456777788889999999999999988765 3 45678888889999999999999999988764 3466
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc--cCCccHHHHHHHHHHH
Q 048364 252 MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM--RLEPNVIIWGSFLAAC 329 (400)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~p~~~~~~~l~~~~ 329 (400)
..+..+..++.+.|++++|...|+++.+ -.+.+..++..+..++...|++++|.+.++.. ..+.+...+..+...+
T Consensus 238 ~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 315 (388)
T d1w3ba_ 238 VVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHH
Confidence 7778888889999999999999999884 22345678888999999999999999999888 3344667888888999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 330 KEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 330 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
...|++++|+..++++++.. | .++.++..++.+|...|++++|...+++..+
T Consensus 316 ~~~~~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 367 (388)
T d1w3ba_ 316 REQGNIEEAVRLYRKALEVF-P-EFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSC-T-TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999988 8 7888999999999999999999999998876
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.2e-20 Score=165.02 Aligned_cols=357 Identities=11% Similarity=0.078 Sum_probs=284.2
Q ss_pred HhhHHHHhCCCCCCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCCC-
Q 048364 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPER- 79 (400)
Q Consensus 2 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~- 79 (400)
+.|+.+.+.. |-+...+..+...+.+.|++++|.+.++.+++..+. +..++..+...+ ..|++++|...++.....
T Consensus 20 ~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 97 (388)
T d1w3ba_ 20 RHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQLQEAIEHYRHALRLK 97 (388)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhhhhccccccccccccccccc
Confidence 3455555442 335778889999999999999999999999987543 566788888889 999999999999888742
Q ss_pred --ChhhHHHHHHHHHcCCChHHHHHHHhhCC---CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHH
Q 048364 80 --NAVTWNTMIKGYSKSGNVCEARDFFERMP---LRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAV 154 (400)
Q Consensus 80 --~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 154 (400)
+...+..........+....+........ .................+....+...+....... +-+...+..+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l 175 (388)
T d1w3ba_ 98 PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ--PNFAVAWSNL 175 (388)
T ss_dssp TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccC--cchhHHHHhh
Confidence 33344444444445555555444443332 3455566666777778888888888888877221 2345677778
Q ss_pred HHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHhCCC
Q 048364 155 LSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE---RNVISWTALICGSAHRGY 231 (400)
Q Consensus 155 l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 231 (400)
...+...|+.+. |...+....+.. +-+...+..+..++...|++++|...+++..+ .+...+..+...+.+.|+
T Consensus 176 ~~~~~~~~~~~~--A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 252 (388)
T d1w3ba_ 176 GCVFNAQGEIWL--AIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGL 252 (388)
T ss_dssp HHHHHTTTCHHH--HHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred cccccccCcHHH--HHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCC
Confidence 888899999999 888888887764 23567788899999999999999999988775 355677888899999999
Q ss_pred hhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 048364 232 SEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIR 311 (400)
Q Consensus 232 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 311 (400)
+++|+..|++..+.. +-+..++..+..++...|++++|.+.++.... ..+.+...+..+...+...|++++|.+.|+
T Consensus 253 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 329 (388)
T d1w3ba_ 253 IDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKREQGNIEEAVRLYR 329 (388)
T ss_dssp HHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhc--cCCccchhhhHHHHHHHHCCCHHHHHHHHH
Confidence 999999999998863 23567888999999999999999999999885 345677888899999999999999999999
Q ss_pred hc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccc
Q 048364 312 TM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEK 370 (400)
Q Consensus 312 ~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 370 (400)
+. ...| +..++..+..+|...|++++|...|+++++.. | .++.++..++.+|.+.||
T Consensus 330 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~-P-~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 330 KALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-P-TFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-T-TCHHHHHHHHHHHHHTCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCC
Confidence 97 6667 46678899999999999999999999999998 8 889999999999988775
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=4.8e-15 Score=125.99 Aligned_cols=224 Identities=13% Similarity=0.015 Sum_probs=118.3
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhcCCCCC-CHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHH
Q 048364 118 MIAAYLNAGAYDPGLKLFREMISNEGLTP-DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYA 196 (400)
Q Consensus 118 l~~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 196 (400)
....+.+.|++++|+..|+++.+ ..| +..+|..+..++...|+++. |...+....+... -+...+..++.+|.
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~~~~~~--A~~~~~~al~~~p-~~~~~~~~la~~~~ 98 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQ---QDPKHMEAWQYLGTTQAENEQELL--AISALRRCLELKP-DNQTALMALAVSFT 98 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH---SCTTCHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCChHH--HHHHHHhhhcccc-cccccccccccccc
Confidence 34445555666666666666551 123 23345555555555555555 5555554444332 24566777888888
Q ss_pred hcCCHHHHHHHHHhccCCCcc------------------cHHHHHHHHHhCCChhhHHHHHHHHHHCC-CCCCHHHHHHH
Q 048364 197 KCGFLKYALMVFELMEERNVI------------------SWTALICGSAHRGYSEDALSLFEMMQATG-VKPNEMTFTGV 257 (400)
Q Consensus 197 ~~g~~~~A~~~~~~~~~~~~~------------------~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l 257 (400)
..|++++|.+.++.....++. .....+..+...+.+.+|...+.+..... -.++...+..+
T Consensus 99 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l 178 (323)
T d1fcha_ 99 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL 178 (323)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH
T ss_pred ccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhh
Confidence 889998888888876541110 00111122233344555555555544432 12234445555
Q ss_pred HHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCH
Q 048364 258 LTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQF 335 (400)
Q Consensus 258 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~ 335 (400)
...+...|++++|...++..... .+.+...|..+..+|...|++++|.+.|++. ...| +...|..+..+|.+.|++
T Consensus 179 ~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~ 256 (323)
T d1fcha_ 179 GVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAH 256 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCH
Confidence 55555566666666666655532 1223445555555666666666666666555 3333 334455555566666666
Q ss_pred HHHHHHHHHHHHcC
Q 048364 336 DMAERVIKQALRMV 349 (400)
Q Consensus 336 ~~a~~~~~~~~~~~ 349 (400)
++|+..|+++++..
T Consensus 257 ~~A~~~~~~al~l~ 270 (323)
T d1fcha_ 257 REAVEHFLEALNMQ 270 (323)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC
Confidence 66666666666555
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=5.5e-15 Score=125.58 Aligned_cols=229 Identities=10% Similarity=0.006 Sum_probs=149.3
Q ss_pred HhCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHhhCC---CCChhhHHHHHHHHHhcCCcchHHHHH
Q 048364 62 VVTSFGFARKLFDELPE--R-NAVTWNTMIKGYSKSGNVCEARDFFERMP---LRNVASWSAMIAAYLNAGAYDPGLKLF 135 (400)
Q Consensus 62 ~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~ 135 (400)
+.|++++|+..|+++.+ | +..+|..+..++...|++++|+..|++.. +.+...|..+..+|...|++++|.+.+
T Consensus 31 ~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 110 (323)
T d1fcha_ 31 QEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEIL 110 (323)
T ss_dssp HTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccccccccch
Confidence 66666666666666543 2 34456666666666666666666666543 224455666666666666666666666
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC--
Q 048364 136 REMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE-- 213 (400)
Q Consensus 136 ~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 213 (400)
++.. ...|+. ..............+.......+..+...+.+.+|...|.+..+
T Consensus 111 ~~~~---~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~ 166 (323)
T d1fcha_ 111 RDWL---RYTPAY---------------------AHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD 166 (323)
T ss_dssp HHHH---HTSTTT---------------------GGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhHH---Hhccch---------------------HHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 6655 222321 11111111111111111122233344566778888888887654
Q ss_pred C---CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhH
Q 048364 214 R---NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHY 290 (400)
Q Consensus 214 ~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 290 (400)
| +...+..+...+...|++++|+..|++..... +-+...+..+..++...|++++|.+.++++.+. -+.+..++
T Consensus 167 p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~ 243 (323)
T d1fcha_ 167 PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSR 243 (323)
T ss_dssp TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred hcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHH--hhccHHHH
Confidence 3 34567788899999999999999999988763 225678889999999999999999999999853 23356789
Q ss_pred HHHHHHHHhcCChHHHHHHHHhc-cCCc
Q 048364 291 GCMVDLFGKAGFLEEAYEVIRTM-RLEP 317 (400)
Q Consensus 291 ~~l~~~~~~~g~~~~a~~~~~~~-~~~p 317 (400)
..++.+|.+.|++++|.+.|++. .+.|
T Consensus 244 ~~lg~~~~~~g~~~~A~~~~~~al~l~p 271 (323)
T d1fcha_ 244 YNLGISCINLGAHREAVEHFLEALNMQR 271 (323)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999987 4444
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.35 E-value=2e-10 Score=97.93 Aligned_cols=259 Identities=14% Similarity=0.009 Sum_probs=116.0
Q ss_pred HHHHHcCCChHHHHHHHhhCC--CC-C-----hhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCH----HHHHHHH
Q 048364 88 IKGYSKSGNVCEARDFFERMP--LR-N-----VASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQ----MTIGAVL 155 (400)
Q Consensus 88 ~~~~~~~~~~~~a~~~~~~~~--~~-~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~----~~~~~ll 155 (400)
...+...|++++|++++++.. .| + ..+++.+..+|...|++++|+..|++..+...-.++. ..+..+.
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 445667777777777776643 12 1 2355566677777777777777777776222212221 1233334
Q ss_pred HHhhcccchhhhhhhhhhhHHHhcc----cc---chHHHHHHHHHHHHhcCCHHHHHHHHHhccC--------CCcccHH
Q 048364 156 SGCSHLGSVGLLMGKSAHGFIVKNE----WE---LNEQIATILVDMYAKCGFLKYALMVFELMEE--------RNVISWT 220 (400)
Q Consensus 156 ~~~~~~~~~~~~~a~~~~~~~~~~~----~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~ 220 (400)
..+...|++.. +...+....... .. .....+..+...+...|+++.+...+..... .....+.
T Consensus 99 ~~~~~~~~~~~--a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 176 (366)
T d1hz4a_ 99 EILFAQGFLQT--AWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 176 (366)
T ss_dssp HHHHHTTCHHH--HHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 44455555555 444444433211 00 0112333444455555555555555544432 0112233
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCC--ChhhHHH
Q 048364 221 ALICGSAHRGYSEDALSLFEMMQAT--GVKPN----EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP--RIQHYGC 292 (400)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~m~~~--~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~ 292 (400)
.....+...++...+...+.+.... ..... ...+..+...+...|+++.|...++...+.....+ ....+..
T Consensus 177 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 256 (366)
T d1hz4a_ 177 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 256 (366)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 3334444455555555544443321 00101 11223333344445555555555554442111000 1122333
Q ss_pred HHHHHHhcCChHHHHHHHHhc-------cCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048364 293 MVDLFGKAGFLEEAYEVIRTM-------RLEPN-VIIWGSFLAACKEHKQFDMAERVIKQALRM 348 (400)
Q Consensus 293 l~~~~~~~g~~~~a~~~~~~~-------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 348 (400)
+..++...|++++|...+++. +..|+ ...+..+..+|...|++++|.+.+++.++.
T Consensus 257 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l 320 (366)
T d1hz4a_ 257 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 320 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 444555555555555555443 22222 223444445555555555555555555544
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.28 E-value=1e-09 Score=93.48 Aligned_cols=250 Identities=10% Similarity=0.014 Sum_probs=153.6
Q ss_pred HhCCHHHHHHHHhhCCC--CC------hhhHHHHHHHHHcCCChHHHHHHHhhCCC-----CC----hhhHHHHHHHHHh
Q 048364 62 VVTSFGFARKLFDELPE--RN------AVTWNTMIKGYSKSGNVCEARDFFERMPL-----RN----VASWSAMIAAYLN 124 (400)
Q Consensus 62 ~~g~~~~a~~~~~~~~~--~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~ 124 (400)
..|++++|..++++..+ |+ ...++.+...+...|++++|++.|++... ++ ..++..+...+..
T Consensus 24 ~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (366)
T d1hz4a_ 24 NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA 103 (366)
T ss_dssp HTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 77888888888776542 21 23456667777788888888888776541 11 2345556667777
Q ss_pred cCCcchHHHHHHHHHhc---CCCC--CC-HHHHHHHHHHhhcccchhhhhhhhhhhHHHhcc----ccchHHHHHHHHHH
Q 048364 125 AGAYDPGLKLFREMISN---EGLT--PD-QMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE----WELNEQIATILVDM 194 (400)
Q Consensus 125 ~g~~~~a~~~~~~m~~~---~~~~--p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~ 194 (400)
.|++..+...+...... .+.. +. ...+..+...+...|+++. +...+....... .......+..+...
T Consensus 104 ~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (366)
T d1hz4a_ 104 QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDE--AEASARSGIEVLSSYQPQQQLQCLAMLIQC 181 (366)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHTTTSCGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhh--hHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence 78888888888777521 1111 11 1234455566777777777 776666655432 22234455556666
Q ss_pred HHhcCCHHHHHHHHHhccC-----C-----CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCC---CHHHHHHHHHHH
Q 048364 195 YAKCGFLKYALMVFELMEE-----R-----NVISWTALICGSAHRGYSEDALSLFEMMQATGVKP---NEMTFTGVLTAC 261 (400)
Q Consensus 195 ~~~~g~~~~A~~~~~~~~~-----~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~l~~~~ 261 (400)
+...++...+...+..... . ....+......+...|++++|...+++........ ....+..+..++
T Consensus 182 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 261 (366)
T d1hz4a_ 182 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ 261 (366)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 7777777777776655442 1 11234555566777788888887777665432221 123455566777
Q ss_pred HhcCChhhHHHHHHHhhhh---cCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHhc
Q 048364 262 VHTGLVDEGRKYFKMIDEE---YDLEPR-IQHYGCMVDLFGKAGFLEEAYEVIRTM 313 (400)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~---~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 313 (400)
...|++++|...++.+... .+..|+ ...+..+..+|.+.|++++|.+.+++.
T Consensus 262 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~A 317 (366)
T d1hz4a_ 262 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 317 (366)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 7788888888887766521 133332 345666777788888888888777765
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=1.6e-10 Score=96.84 Aligned_cols=192 Identities=10% Similarity=0.013 Sum_probs=84.4
Q ss_pred HHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcC-CHHHHHHHHHhccC---CCcccHHHHHHHH
Q 048364 151 IGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCG-FLKYALMVFELMEE---RNVISWTALICGS 226 (400)
Q Consensus 151 ~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 226 (400)
++.+-..+.+.+..++ |...++.+.+.. +-+...|+....++...| ++++|...+++..+ .+..+|+.+...+
T Consensus 46 ~~~~~~~~~~~e~~~~--Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 46 YDYFRAVLQRDERSER--AFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHTCCCHH--HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchHH--HHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHH
Confidence 3334444444445555 555555555443 113334444444444433 24555555554433 2334444444555
Q ss_pred HhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCC----
Q 048364 227 AHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF---- 302 (400)
Q Consensus 227 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---- 302 (400)
.+.|++++|+..++++.+.. +-+...|..+...+...|++++|.+.++.+.+. -+.+...|+.+...+.+.+.
T Consensus 123 ~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~--~p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--CCccHHHHHHHHHHHHHccccchh
Confidence 55555555555555554432 113444555555555555555555555555431 11233344444444433333
Q ss_pred --hHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 303 --LEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 303 --~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
+++|.+.+.+. ...| +...|+.+...+. ....+++...++...+..
T Consensus 200 ~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~ 249 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQ 249 (315)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHT
T ss_pred hhhHHhHHHHHHHHHhCCCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhC
Confidence 33444444443 2233 2333333333322 222344445555444444
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=5.1e-10 Score=93.69 Aligned_cols=208 Identities=10% Similarity=0.034 Sum_probs=154.1
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCH-HHHHHHHHHhhccc-chhhhhhhhhhhHHHhccccchHHHHHH
Q 048364 113 ASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQ-MTIGAVLSGCSHLG-SVGLLMGKSAHGFIVKNEWELNEQIATI 190 (400)
Q Consensus 113 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~ll~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 190 (400)
.+|+.+...+.+.+.+++|++++++++ .+.|+. ..|+....++...| ++++ +...++.+.+... -+..+|..
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai---~lnP~~~~a~~~r~~~l~~l~~~~~e--al~~~~~al~~~p-~~~~a~~~ 117 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAI---ELNAANYTVWHFRRVLLKSLQKDLHE--EMNYITAIIEEQP-KNYQVWHH 117 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCCHHH--HHHHHHHHHHHCT-TCHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH---HHCCCChHHHHHHHHHHHHhCcCHHH--HHHHHHHHHHHHH-hhhhHHHH
Confidence 467777778888889999999999988 345654 45677777777766 4788 8888888777653 36788888
Q ss_pred HHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-
Q 048364 191 LVDMYAKCGFLKYALMVFELMEE---RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGL- 266 (400)
Q Consensus 191 l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~- 266 (400)
+..++.+.|++++|...++++.+ .+...|..+...+...|++++|+..++++.+.+. -+...|+.+...+.+.+.
T Consensus 118 ~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p-~n~~a~~~r~~~l~~~~~~ 196 (315)
T d2h6fa1 118 RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGY 196 (315)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCS
T ss_pred HhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCC-ccHHHHHHHHHHHHHcccc
Confidence 99999999999999999999986 3567889999999999999999999999998743 256677777766666655
Q ss_pred -----hhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc---cHHHHHHHHHHHH
Q 048364 267 -----VDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP---NVIIWGSFLAACK 330 (400)
Q Consensus 267 -----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p---~~~~~~~l~~~~~ 330 (400)
+++|...+..+.+. .+.+...|..+...+... ..+++.+.++.. .+.| +...+..++..|.
T Consensus 197 ~~~~~~~~ai~~~~~al~~--~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 197 NDRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp CSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred chhhhhHHhHHHHHHHHHh--CCCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 56788888888753 234667777776665544 456677776665 3333 4455555555553
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.23 E-value=1.1e-10 Score=99.00 Aligned_cols=231 Identities=8% Similarity=-0.071 Sum_probs=161.2
Q ss_pred hcCCcchHHHHHHHHHhcCCCCC-CHHHHHHHHHHhhcccc--hhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCC
Q 048364 124 NAGAYDPGLKLFREMISNEGLTP-DQMTIGAVLSGCSHLGS--VGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGF 200 (400)
Q Consensus 124 ~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 200 (400)
..|++++|+.+++...+. .| +...+..+..++...+. ++. +...+..+.+.........+......+...+.
T Consensus 85 ~~~~~~~al~~~~~~l~~---~pk~~~~~~~~~~~~~~~~~~~~~~--a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 159 (334)
T d1dcea1 85 SAALVKAELGFLESCLRV---NPKSYGTWHHRCWLLSRLPEPNWAR--ELELCARFLEADERNFHCWDYRRFVAAQAAVA 159 (334)
T ss_dssp HHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTCSSCCHHH--HHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHh---CCCcHHHHHHhhHHHHHhccccHHH--HHHHHHHHHhhCchhhhhhhhHHHHHHHhccc
Confidence 344566777777777622 34 33445555555544443 455 66666666665433222333445567778899
Q ss_pred HHHHHHHHHhccCC---CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHh
Q 048364 201 LKYALMVFELMEER---NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMI 277 (400)
Q Consensus 201 ~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 277 (400)
++.|...++...+. +...|+.+...+.+.|++++|...+.+.... .|+ .......+...+..+++...+...
T Consensus 160 ~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~ 234 (334)
T d1dcea1 160 PAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRW 234 (334)
T ss_dssp HHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHH
Confidence 99999999988873 4567888888999999998887665544332 111 122334456678888888888887
Q ss_pred hhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCc
Q 048364 278 DEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355 (400)
Q Consensus 278 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 355 (400)
.. ..+++...+..++..+...|+.++|...+.+. ...| +...+..+..++...|++++|...++++++.+ | .+.
T Consensus 235 l~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld-P-~~~ 310 (334)
T d1dcea1 235 LL--GRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD-P-MRA 310 (334)
T ss_dssp HH--SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC-G-GGH
T ss_pred HH--hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-c-ccH
Confidence 74 33455666777888888999999999999988 5566 45678889999999999999999999999999 8 777
Q ss_pred hHHHHHHHHhhcc
Q 048364 356 GVFTLICDLYTMN 368 (400)
Q Consensus 356 ~~~~~l~~~~~~~ 368 (400)
..|..|...+...
T Consensus 311 ~y~~~L~~~~~~e 323 (334)
T d1dcea1 311 AYLDDLRSKFLLE 323 (334)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHh
Confidence 7888777666543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.16 E-value=4.5e-10 Score=91.34 Aligned_cols=191 Identities=9% Similarity=-0.074 Sum_probs=107.9
Q ss_pred HHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CcccHHHHHHHHHhCCC
Q 048364 155 LSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE--R-NVISWTALICGSAHRGY 231 (400)
Q Consensus 155 l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~ 231 (400)
..++.+.|+++. |...+....+.. +-++.++..+..+|.+.|++++|...|+++.+ | +..++..+..+|...|+
T Consensus 44 G~~y~~~g~~~~--A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~ 120 (259)
T d1xnfa_ 44 GVLYDSLGLRAL--ARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR 120 (259)
T ss_dssp HHHHHHTTCHHH--HHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHH--HHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhh
Confidence 333444444444 444444433332 12455677777888888888888888887765 3 34567777788888888
Q ss_pred hhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCCh----HHHH
Q 048364 232 SEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFL----EEAY 307 (400)
Q Consensus 232 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~a~ 307 (400)
+++|...|++..+.. +.+......+..++.+.+..+.+..+....... .+....++ ++..+...... +.+.
T Consensus 121 ~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 195 (259)
T d1xnfa_ 121 DKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS---DKEQWGWN-IVEFYLGNISEQTLMERLK 195 (259)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS---CCCSTHHH-HHHHHTTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc---chhhhhhh-HHHHHHHHHHHHHHHHHHH
Confidence 888888888877753 223444334444455555555555555444421 22222222 22333222222 2222
Q ss_pred HHHHhc-cCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCc
Q 048364 308 EVIRTM-RLEPN-VIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355 (400)
Q Consensus 308 ~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 355 (400)
..+... ...|+ ..+|..+...|...|++++|...|+++++.. | .+.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p-~~~ 243 (259)
T d1xnfa_ 196 ADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN-V-HNF 243 (259)
T ss_dssp HHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-C-TTC
T ss_pred HHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-C-CCH
Confidence 222211 22232 2356677888888899999999999988887 6 443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.16 E-value=1.8e-10 Score=93.85 Aligned_cols=196 Identities=10% Similarity=-0.032 Sum_probs=138.4
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048364 184 NEQIATILVDMYAKCGFLKYALMVFELMEE---RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTA 260 (400)
Q Consensus 184 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 260 (400)
...++..+..+|.+.|++++|...|++..+ .++.+|+.+..+|.+.|++++|+..|++..+... -+..++..+..+
T Consensus 36 ~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~ 114 (259)
T d1xnfa_ 36 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAHLNRGIA 114 (259)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHh-hhhhhHHHHHHH
Confidence 345677888999999999999999999875 3567899999999999999999999999998642 245678888999
Q ss_pred HHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCccHHHHHHHHHHHH----hcCCH
Q 048364 261 CVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNVIIWGSFLAACK----EHKQF 335 (400)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~~~~~~l~~~~~----~~~~~ 335 (400)
+...|++++|...++...+. .+.+......+..++.+.+..+.+..+.... ...++...++. +..+. ..+..
T Consensus 115 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 191 (259)
T d1xnfa_ 115 LYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNI-VEFYLGNISEQTLM 191 (259)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHH-HHHHTTSSCHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhH-HHHHHHHHHHHHHH
Confidence 99999999999999999854 2234444444455556666555555544444 22222222222 22222 12233
Q ss_pred HHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhccc
Q 048364 336 DMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQN 385 (400)
Q Consensus 336 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 385 (400)
+.+...+....... | ....++..++..|...|++++|...|++.+...
T Consensus 192 ~~~~~~~~~~~~~~-~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 192 ERLKADATDNTSLA-E-HLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp HHHHHHCCSHHHHH-H-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhhcC-c-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 44444444444443 4 455678889999999999999999999988643
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.12 E-value=7.4e-09 Score=86.33 Aligned_cols=178 Identities=8% Similarity=0.029 Sum_probs=96.1
Q ss_pred hhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC--C-C-cccHHHHHHHHHhCCChhhHHHHHHHHHH
Q 048364 169 GKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE--R-N-VISWTALICGSAHRGYSEDALSLFEMMQA 244 (400)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 244 (400)
+..+++...+...+.+...+...+..+.+.|+.+.|..+|+++.+ | + ...|...+..+.+.|+.+.|.++|+++.+
T Consensus 83 a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~ 162 (308)
T d2onda1 83 AANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE 162 (308)
T ss_dssp HHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 445555554443334445555556666666666666666666544 1 1 12455555666666666666666666655
Q ss_pred CCCCCCHHHHHHHHHH-HHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc----cCCcc-
Q 048364 245 TGVKPNEMTFTGVLTA-CVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM----RLEPN- 318 (400)
Q Consensus 245 ~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~p~- 318 (400)
.+.. +...|...... +...|+.+.|..+|+.+.+. .+.+...|...+..+.+.|++++|..+|++. +..|+
T Consensus 163 ~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~ 239 (308)
T d2onda1 163 DART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 239 (308)
T ss_dssp STTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGG
T ss_pred hCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHH
Confidence 4322 22222222221 22345666666666666642 2334555666666666666666666666665 22332
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 319 -VIIWGSFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 319 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
...|...+..-...|+.+.+..+.+++.+..
T Consensus 240 ~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~ 271 (308)
T d2onda1 240 SGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 2355555555556666666666666665554
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.11 E-value=8.6e-09 Score=85.92 Aligned_cols=182 Identities=12% Similarity=0.077 Sum_probs=142.2
Q ss_pred CCHHHHHHHHHhccC----CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHH
Q 048364 199 GFLKYALMVFELMEE----RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYF 274 (400)
Q Consensus 199 g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 274 (400)
+..++|..+|++..+ .+...|...+..+...|+++.|..+|+++...........|...+..+.+.|+.+.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 346778888888664 2445677888888999999999999999987643333457889999999999999999999
Q ss_pred HHhhhhcCCCCChhhHHHHHHH-HHhcCChHHHHHHHHhc--cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048364 275 KMIDEEYDLEPRIQHYGCMVDL-FGKAGFLEEAYEVIRTM--RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKP 351 (400)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 351 (400)
+.+.+. .+.+...|...... +...|+.+.|..+|+.+ ..+.+...|...+..+...|+++.|..+|++.+... |
T Consensus 158 ~~al~~--~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~-~ 234 (308)
T d2onda1 158 KKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG-S 234 (308)
T ss_dssp HHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS-S
T ss_pred HHHHHh--CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-C
Confidence 999853 23344555544443 34568999999999998 333467789999999999999999999999999976 4
Q ss_pred C-C--CchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 352 E-N--DGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 352 ~-~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
. | ....|...+..-...|+.+.+..+.+++.+
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 1 234677777777888999999999998865
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.03 E-value=1.4e-10 Score=98.37 Aligned_cols=246 Identities=7% Similarity=-0.115 Sum_probs=169.6
Q ss_pred HhcCCcchHHHHHHHHHhcCCCCCCHHH-HHHH---HHH-------hhcccchhhhhhhhhhhHHHhccccchHHHHHHH
Q 048364 123 LNAGAYDPGLKLFREMISNEGLTPDQMT-IGAV---LSG-------CSHLGSVGLLMGKSAHGFIVKNEWELNEQIATIL 191 (400)
Q Consensus 123 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~-~~~l---l~~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 191 (400)
.+.+..++|++++++.. ...|+..+ |+.. +.. +...|.++. +..+++.+.+.. +.+...+..+
T Consensus 40 ~~~~~~~~al~~~~~~l---~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~--al~~~~~~l~~~-pk~~~~~~~~ 113 (334)
T d1dcea1 40 QAGELDESVLELTSQIL---GANPDFATLWNCRREVLQHLETEKSPEESAALVKA--ELGFLESCLRVN-PKSYGTWHHR 113 (334)
T ss_dssp HTTCCSHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHH--HHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hcccccHHHHHHHHHHH---HHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHH--HHHHHHHHHHhC-CCcHHHHHHh
Confidence 33344578888888887 34566543 3222 222 223344556 677777776654 3355566666
Q ss_pred HHHHHhcC--CHHHHHHHHHhccCC---CcccHH-HHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048364 192 VDMYAKCG--FLKYALMVFELMEER---NVISWT-ALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTG 265 (400)
Q Consensus 192 ~~~~~~~g--~~~~A~~~~~~~~~~---~~~~~~-~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 265 (400)
..++...+ ++++|...++++.+. +...+. .....+...+.+++|+..++++...+. -+...|..+..++.+.|
T Consensus 114 ~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p-~~~~a~~~l~~~~~~~~ 192 (334)
T d1dcea1 114 CWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLH 192 (334)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHS
T ss_pred hHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhc
Confidence 66666655 478898888887653 334443 344667778899999999988877643 26677888888888999
Q ss_pred ChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc--cCCccHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048364 266 LVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM--RLEPNVIIWGSFLAACKEHKQFDMAERVIK 343 (400)
Q Consensus 266 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 343 (400)
++++|...++...+. .|. .......+...+..+++...+... ...++...+..+...+...|+.++|...+.
T Consensus 193 ~~~~A~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 266 (334)
T d1dcea1 193 PQPDSGPQGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQ 266 (334)
T ss_dssp CCCCSSSCCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhHHh---HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 988887666655532 111 122334455667777777777766 223344456667778888899999999999
Q ss_pred HHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 344 QALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 344 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
+..... | .+..++..++.+|.+.|++++|.+.+++..+
T Consensus 267 ~~~~~~-p-~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ 304 (334)
T d1dcea1 267 ELEPEN-K-WCLLTIILLMRALDPLLYEKETLQYFSTLKA 304 (334)
T ss_dssp HHCTTC-H-HHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred HHHhhC-c-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999888 8 7889999999999999999999999999876
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.83 E-value=2.6e-07 Score=75.91 Aligned_cols=198 Identities=10% Similarity=-0.074 Sum_probs=112.8
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHH
Q 048364 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMY 195 (400)
Q Consensus 116 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 195 (400)
......|...|++++|.+.|.+...- +.+.++.. ....+|..+..+|
T Consensus 41 ~~aa~~y~~~~~~~~A~~~y~kA~~~----------------~~~~~~~~-----------------~~a~~~~~~g~~y 87 (290)
T d1qqea_ 41 VQAATIYRLRKELNLAGDSFLKAADY----------------QKKAGNED-----------------EAGNTYVEAYKCF 87 (290)
T ss_dssp HHHHHHHHHTTCTHHHHHHHHHHHHH----------------HHHTTCHH-----------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHH----------------HHHcCCCH-----------------HHHHHHHHHHHHH
Confidence 34567788888999999988887621 01111111 0123455555666
Q ss_pred HhcCCHHHHHHHHHhccC-----C----CcccHHHHHHHHH-hCCChhhHHHHHHHHHHC----CCCCC-HHHHHHHHHH
Q 048364 196 AKCGFLKYALMVFELMEE-----R----NVISWTALICGSA-HRGYSEDALSLFEMMQAT----GVKPN-EMTFTGVLTA 260 (400)
Q Consensus 196 ~~~g~~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~-~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~l~~~ 260 (400)
.+.|++++|...+++..+ . ...++..+...|. ..|++++|+..|++..+. +..+. ..++..+...
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~ 167 (290)
T d1qqea_ 88 KSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADL 167 (290)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHH
Confidence 666666666666655443 1 1233445555553 358888888888776432 21111 2456677778
Q ss_pred HHhcCChhhHHHHHHHhhhhcCCCCCh-----hhHHHHHHHHHhcCChHHHHHHHHhc-cCCcc------HHHHHHHHHH
Q 048364 261 CVHTGLVDEGRKYFKMIDEEYDLEPRI-----QHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPN------VIIWGSFLAA 328 (400)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~------~~~~~~l~~~ 328 (400)
+...|++++|...|+++.......+.. ..+...+.++...|+++.|.+.+++. .+.|. ......++.+
T Consensus 168 ~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a 247 (290)
T d1qqea_ 168 KALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDA 247 (290)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHH
T ss_pred HHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHH
Confidence 888888888888888877432111111 12344555667788888888888887 44442 2234555555
Q ss_pred HHh--cCCHHHHHHHHHHHH
Q 048364 329 CKE--HKQFDMAERVIKQAL 346 (400)
Q Consensus 329 ~~~--~~~~~~a~~~~~~~~ 346 (400)
+-. .+.+++|+..|+++.
T Consensus 248 ~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 248 VNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHTTCTTTHHHHHHHHTTSS
T ss_pred HHhcCHHHHHHHHHHHHHHh
Confidence 544 234667766665443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.81 E-value=8.4e-08 Score=73.48 Aligned_cols=122 Identities=14% Similarity=0.032 Sum_probs=92.7
Q ss_pred HHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCC
Q 048364 223 ICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF 302 (400)
Q Consensus 223 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 302 (400)
...+...|+++.|++.|.++ .+|+..++..+..++...|++++|.+.|++..+. -+.....|..+..+|.+.|+
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--dp~~~~a~~~~g~~~~~~g~ 85 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEK 85 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH--hhhhhhhHHHHHHHHHhhcc
Confidence 45667788899998888754 3567778888888888899999999999888843 23356778888888888999
Q ss_pred hHHHHHHHHhc-c-CCcc----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048364 303 LEEAYEVIRTM-R-LEPN----------------VIIWGSFLAACKEHKQFDMAERVIKQALRMVKP 351 (400)
Q Consensus 303 ~~~a~~~~~~~-~-~~p~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 351 (400)
+++|.+.|++. . .+++ ..++..+..++.+.|++++|.+.++++.... |
T Consensus 86 ~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~-~ 151 (192)
T d1hh8a_ 86 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK-S 151 (192)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-C
T ss_pred HHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-C
Confidence 99998888876 1 1111 2445567778888888999888888888877 5
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.78 E-value=2.3e-08 Score=77.54 Aligned_cols=118 Identities=13% Similarity=-0.059 Sum_probs=91.1
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHH
Q 048364 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFL 326 (400)
Q Consensus 249 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~ 326 (400)
|+...+......+.+.|++++|+..|+++.+. .+.+...|..+..+|.+.|++++|+..|++. .+.| +...|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 67777788888899999999999999988853 2446778888999999999999999999988 6677 466888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccc
Q 048364 327 AACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEK 370 (400)
Q Consensus 327 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 370 (400)
.+|...|++++|...|+++++.. | .+...+...+..+...+.
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~-p-~~~~~~~~~~~~~l~~~~ 121 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLA-K-EQRLNFGDDIPSALRIAK 121 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH-H-HTTCCCCSHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-c-ccHHHHHHHHHHHHHHHH
Confidence 99999999999999999988876 5 333333333444443333
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.77 E-value=1e-07 Score=78.46 Aligned_cols=196 Identities=12% Similarity=0.008 Sum_probs=137.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccC-----CC----cccHHHHHHHHHhCCChhhHHHHHHHHHHC----CCC-CCHH
Q 048364 187 IATILVDMYAKCGFLKYALMVFELMEE-----RN----VISWTALICGSAHRGYSEDALSLFEMMQAT----GVK-PNEM 252 (400)
Q Consensus 187 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~-p~~~ 252 (400)
.|......|...|++++|.+.|.+..+ .+ ..+|..+..+|.+.|++++|...+++.... |.. ....
T Consensus 39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 118 (290)
T d1qqea_ 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (290)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHH
Confidence 456677889999999999999988764 12 357888899999999999999999976552 111 1134
Q ss_pred HHHHHHHHHHh-cCChhhHHHHHHHhhhhc---CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-------cH
Q 048364 253 TFTGVLTACVH-TGLVDEGRKYFKMIDEEY---DLEP-RIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-------NV 319 (400)
Q Consensus 253 ~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-------~~ 319 (400)
++..+...|.. .|++++|...+++..+-. +.++ ...++..+...|...|++++|.+.|++. ...| ..
T Consensus 119 ~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~ 198 (290)
T d1qqea_ 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (290)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhH
Confidence 55666666644 699999999998876321 1111 1345788899999999999999999987 1111 11
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-C---chHHHHHHHHhhc--ccchHHHHHHHHHHhc
Q 048364 320 -IIWGSFLAACKEHKQFDMAERVIKQALRMVKPEN-D---GGVFTLICDLYTM--NEKWEGAERVRKLMLN 383 (400)
Q Consensus 320 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~---~~~~~~l~~~~~~--~g~~~~a~~~~~~m~~ 383 (400)
..+...+..+...|+++.|...+++..+.. |.. + ......++.++.. .+.+++|+..|+++.+
T Consensus 199 ~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~-~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~ 268 (290)
T d1qqea_ 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSED-PNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (290)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence 234455667778999999999999998876 421 1 2345566666654 3457888887766554
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.76 E-value=1e-07 Score=66.47 Aligned_cols=102 Identities=17% Similarity=0.129 Sum_probs=62.5
Q ss_pred HHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCH
Q 048364 258 LTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQF 335 (400)
Q Consensus 258 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~ 335 (400)
...+.+.|++++|+..|+.+.+. .+.+...|..+..+|...|++++|+..+++. .+.| +...|..+..++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 34455666666666666666642 2334556666666666667777776666666 3333 455666666666677777
Q ss_pred HHHHHHHHHHHHcCCCCCCchHHHHHHH
Q 048364 336 DMAERVIKQALRMVKPENDGGVFTLICD 363 (400)
Q Consensus 336 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 363 (400)
++|+..+++.++.. | .++.++..+..
T Consensus 88 ~~A~~~~~~a~~~~-p-~~~~~~~~l~~ 113 (117)
T d1elwa_ 88 EEAKRTYEEGLKHE-A-NNPQLKEGLQN 113 (117)
T ss_dssp HHHHHHHHHHHTTC-T-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-C-CCHHHHHHHHH
Confidence 77777777777666 6 55555554443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.75 E-value=4.4e-07 Score=69.38 Aligned_cols=126 Identities=13% Similarity=-0.015 Sum_probs=103.7
Q ss_pred HHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHH
Q 048364 192 VDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGR 271 (400)
Q Consensus 192 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 271 (400)
...+...|+++.|.+.|.++..++..+|..+..+|...|++++|++.|++..+.. +-+...|..+..++.+.|++++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHH
Confidence 5567889999999999999988888899999999999999999999999998874 235678888999999999999999
Q ss_pred HHHHHhhhhcC-----------CC--C-ChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCcc
Q 048364 272 KYFKMIDEEYD-----------LE--P-RIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPN 318 (400)
Q Consensus 272 ~~~~~~~~~~~-----------~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~ 318 (400)
..|++...... .. + ...++..+..++.+.|++++|.+.+... ...|+
T Consensus 91 ~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 91 KDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp HHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 99998764211 00 0 1245667888999999999999999987 55564
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.73 E-value=2e-07 Score=69.00 Aligned_cols=118 Identities=12% Similarity=0.024 Sum_probs=93.7
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcC
Q 048364 256 GVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHK 333 (400)
Q Consensus 256 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~ 333 (400)
.....+.+.|++++|...|+++.+. -+.+...|..+..+|...|++++|...|++. .+.| +...|..+..++...|
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence 3455678899999999999999853 2446778889999999999999999999988 5556 5578999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCCchHHHHHHHHh--hcccchHHHHHH
Q 048364 334 QFDMAERVIKQALRMVKPENDGGVFTLICDLY--TMNEKWEGAERV 377 (400)
Q Consensus 334 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~a~~~ 377 (400)
++++|...++++.... | .++..+..+..+. ...+.+++|...
T Consensus 93 ~~~eA~~~~~~a~~~~-p-~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 93 KFRAALRDYETVVKVK-P-HDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp CHHHHHHHHHHHHHHS-T-TCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-C-CCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999998 8 7777777665553 344556666544
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.72 E-value=5.4e-08 Score=67.29 Aligned_cols=91 Identities=19% Similarity=0.055 Sum_probs=81.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhc
Q 048364 290 YGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTM 367 (400)
Q Consensus 290 ~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 367 (400)
...+...+.+.|++++|...|++. ...| +...|..+..++.+.|++++|+..++++++.. | .+..++..++.+|..
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p-~~~~a~~~la~~y~~ 96 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-P-KDIAVHAALAVSHTN 96 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccc-c-ccccchHHHHHHHHH
Confidence 345677888999999999999998 5556 57789999999999999999999999999999 8 889999999999999
Q ss_pred ccchHHHHHHHHHHh
Q 048364 368 NEKWEGAERVRKLML 382 (400)
Q Consensus 368 ~g~~~~a~~~~~~m~ 382 (400)
.|++++|.+.+++.+
T Consensus 97 ~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 97 EHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998753
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.71 E-value=8.6e-08 Score=66.83 Aligned_cols=91 Identities=15% Similarity=0.198 Sum_probs=83.0
Q ss_pred HHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhccc
Q 048364 292 CMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNE 369 (400)
Q Consensus 292 ~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 369 (400)
.-...+.+.|++++|+..|++. ...| +...|..+..+|...|++++|+..++++++.+ | .++..|..++.++...|
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p-~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-P-DWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-T-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhc-c-chhhHHHHHHHHHHHcc
Confidence 3567788999999999999998 5555 66789999999999999999999999999999 9 89999999999999999
Q ss_pred chHHHHHHHHHHhcc
Q 048364 370 KWEGAERVRKLMLNQ 384 (400)
Q Consensus 370 ~~~~a~~~~~~m~~~ 384 (400)
++++|+..+++..+.
T Consensus 86 ~~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKH 100 (117)
T ss_dssp CHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999999864
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.71 E-value=4.3e-08 Score=75.90 Aligned_cols=100 Identities=6% Similarity=-0.080 Sum_probs=84.9
Q ss_pred CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCC-ChhhHHH
Q 048364 214 RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP-RIQHYGC 292 (400)
Q Consensus 214 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~ 292 (400)
|+...+......|.+.|++++|+..|++..... +-+...|..+..+|.+.|++++|+..|+.+. .+.| +...|..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al---~l~p~~~~a~~~ 77 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRAL---ELDGQSVKAHFF 77 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSCTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHH---HhCCCcHHHHHH
Confidence 445556677889999999999999999988874 3467889999999999999999999999998 3455 5678999
Q ss_pred HHHHHHhcCChHHHHHHHHhc-cCCc
Q 048364 293 MVDLFGKAGFLEEAYEVIRTM-RLEP 317 (400)
Q Consensus 293 l~~~~~~~g~~~~a~~~~~~~-~~~p 317 (400)
+..+|.+.|++++|+..|++. .+.|
T Consensus 78 lg~~~~~l~~~~~A~~~~~~al~l~p 103 (201)
T d2c2la1 78 LGQCQLEMESYDEAIANLQRAYSLAK 103 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 999999999999999999987 4444
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=2.5e-07 Score=68.47 Aligned_cols=93 Identities=16% Similarity=0.078 Sum_probs=83.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhc
Q 048364 290 YGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTM 367 (400)
Q Consensus 290 ~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 367 (400)
+......|.+.|++++|...|++. .+.| +...|..+..+|...|++++|...|+++++.. | .+..++..++.+|..
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p-~~~~a~~~~g~~~~~ 90 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-K-KYIKGYYRRAASNMA 90 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-c-cchHHHHHHHHHHHH
Confidence 334566788999999999999998 5556 66788999999999999999999999999999 8 889999999999999
Q ss_pred ccchHHHHHHHHHHhcc
Q 048364 368 NEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 368 ~g~~~~a~~~~~~m~~~ 384 (400)
.|++++|...+++....
T Consensus 91 ~g~~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 91 LGKFRAALRDYETVVKV 107 (159)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHc
Confidence 99999999999998764
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=1.3e-06 Score=65.13 Aligned_cols=85 Identities=14% Similarity=0.027 Sum_probs=71.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHh
Q 048364 288 QHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLY 365 (400)
Q Consensus 288 ~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 365 (400)
.+|+.+..+|.+.|++++|+..+++. .+.| +...|..+..+|...|++++|...|+++++.. | .++.+...+..+.
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-P-~n~~~~~~l~~~~ 140 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-P-NNKAAKTQLAVCQ 140 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-S-SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHH
Confidence 35777889999999999999999988 5566 77789999999999999999999999999999 8 7888888888777
Q ss_pred hcccchHHH
Q 048364 366 TMNEKWEGA 374 (400)
Q Consensus 366 ~~~g~~~~a 374 (400)
.+.+...+.
T Consensus 141 ~~~~~~~~~ 149 (170)
T d1p5qa1 141 QRIRRQLAR 149 (170)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 665555443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=9e-07 Score=61.74 Aligned_cols=103 Identities=10% Similarity=0.005 Sum_probs=77.3
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCC---hHHHHHHHHhc-cCCccH---HHHHHHHH
Q 048364 255 TGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF---LEEAYEVIRTM-RLEPNV---IIWGSFLA 327 (400)
Q Consensus 255 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~-~~~p~~---~~~~~l~~ 327 (400)
..++..+...+++++|++.|+...+. -+.++.++..+..++.+.++ +++|..+|+++ ...|+. .++..+..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 35677778888999999999988853 24566788888888877554 45688888887 444433 36777888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHH
Q 048364 328 ACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361 (400)
Q Consensus 328 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 361 (400)
+|.+.|++++|.+.|+++++.. | .+..+....
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~-P-~~~~A~~l~ 112 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTE-P-QNNQAKELE 112 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-T-TCHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhC-c-CCHHHHHHH
Confidence 8999999999999999999988 7 666555444
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.43 E-value=0.00016 Score=57.71 Aligned_cols=230 Identities=10% Similarity=-0.080 Sum_probs=132.6
Q ss_pred ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHH
Q 048364 111 NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATI 190 (400)
Q Consensus 111 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 190 (400)
|+..+..|...+.+.+++++|++.|++.. +.| +...+..|-..|..-.. +
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa-~~g---~~~A~~~Lg~~y~~G~~-----------------~--------- 50 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKAC-DLK---ENSGCFNLGVLYYQGQG-----------------V--------- 50 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHHHTSS-----------------S---------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HCC---CHHHHHHHHHHHHcCCC-----------------c---------
Confidence 45566777777778888888888888876 433 22333223332222000 0
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCC-CcccHHHHHHHHHh----CCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--
Q 048364 191 LVDMYAKCGFLKYALMVFELMEER-NVISWTALICGSAH----RGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVH-- 263 (400)
Q Consensus 191 l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-- 263 (400)
..+...|...+....++ +......+...+.. .++.+.|...++.....|.. .....+...+..
T Consensus 51 -------~~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~ 120 (265)
T d1ouva_ 51 -------EKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGK 120 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCS
T ss_pred -------chhHHHHHHhhcccccccccchhhccccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCC
Confidence 23455555555544432 22333333333322 45566777777777666532 122222222222
Q ss_pred --cCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHhccCCccHHHHHHHHHHHHh----cC
Q 048364 264 --TGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK----AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKE----HK 333 (400)
Q Consensus 264 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~----~~ 333 (400)
......+...+..... ..+...+..+...|.. ..+...+...++...-..+......+...|.. ..
T Consensus 121 ~~~~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~ 196 (265)
T d1ouva_ 121 VVTRDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATK 196 (265)
T ss_dssp SSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCC
T ss_pred cccchhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCccccc
Confidence 3344555555555543 3455666667777765 45566677777666223345555555555554 56
Q ss_pred CHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhc----ccchHHHHHHHHHHhcccccc
Q 048364 334 QFDMAERVIKQALRMVKPENDGGVFTLICDLYTM----NEKWEGAERVRKLMLNQNVRK 388 (400)
Q Consensus 334 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~~ 388 (400)
++++|..+|++..+.+ ++..+..|...|.+ ..++++|.+.|++..+.|-.+
T Consensus 197 d~~~A~~~~~~aa~~g----~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~~ 251 (265)
T d1ouva_ 197 NFKEALARYSKACELE----NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 251 (265)
T ss_dssp CHHHHHHHHHHHHHTT----CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred chhhhhhhHhhhhccc----CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCHH
Confidence 8899999999998877 35677778887765 347888999999888777544
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.39 E-value=8.2e-06 Score=60.57 Aligned_cols=93 Identities=14% Similarity=0.023 Sum_probs=74.0
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHh
Q 048364 288 QHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLY 365 (400)
Q Consensus 288 ~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 365 (400)
.+|..+..+|.+.|++++|+..+++. .+.| +...|..+..++...|++++|...|+++++.. | .+..+...+..+.
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P-~n~~~~~~l~~~~ 142 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-P-QNKAARLQIFMCQ 142 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-T-TCHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHH
Confidence 35677888999999999999999988 4445 67788899999999999999999999999998 8 7888888877776
Q ss_pred hcccchHH-HHHHHHHHh
Q 048364 366 TMNEKWEG-AERVRKLML 382 (400)
Q Consensus 366 ~~~g~~~~-a~~~~~~m~ 382 (400)
...+...+ ..+++..|-
T Consensus 143 ~~~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 143 KKAKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHH
Confidence 66655443 344554443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.33 E-value=7.4e-06 Score=59.74 Aligned_cols=76 Identities=12% Similarity=0.014 Sum_probs=59.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHh
Q 048364 288 QHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLY 365 (400)
Q Consensus 288 ~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 365 (400)
.+|..+..+|.+.|++++|++.+++. .+.| +..+|..+..++...|++++|...|++.++.. | .+..+...+..+.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~-P-~n~~~~~~l~~~~ 145 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-P-NNLDIRNSYELCV 145 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-T-TCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHH
Confidence 46777888888889999988888887 4455 66788888888888999999999999988888 7 6666666554443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.29 E-value=1.6e-06 Score=61.21 Aligned_cols=94 Identities=7% Similarity=0.015 Sum_probs=59.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCcc--------HHHHHH
Q 048364 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPN--------VIIWGS 324 (400)
Q Consensus 254 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~--------~~~~~~ 324 (400)
+..+...+.+.|++++|+..|++..+. .+.+...+..+..+|.+.|++++|++.++++ .+.|+ ..+|..
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~ 84 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 444556667777777777777777642 2335566667777777777777777777765 22221 134555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 325 FLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 325 l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
+...+...+++++|...+++.+...
T Consensus 85 lg~~~~~~~~~~~A~~~~~kal~~~ 109 (128)
T d1elra_ 85 IGNSYFKEEKYKDAIHFYNKSLAEH 109 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 6666666777777777777776655
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=4.8e-06 Score=62.00 Aligned_cols=63 Identities=13% Similarity=0.015 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhcc
Q 048364 320 IIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 320 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
.+|+.+..+|.+.|++++|+..++++++.+ | .++.++..++.+|...|++++|...|++..+.
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~-p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELD-S-NNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhcc-c-cchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 467778899999999999999999999999 8 89999999999999999999999999998763
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.25 E-value=4.5e-06 Score=57.23 Aligned_cols=82 Identities=9% Similarity=0.085 Sum_probs=35.6
Q ss_pred HHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHH
Q 048364 261 CVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMA 338 (400)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a 338 (400)
+.+.|++++|...|+++.+. -+-+...|..+..++.+.|++++|...|++. .+.| +...|..+..+|...|++++|
T Consensus 26 ~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~~A 103 (112)
T d1hxia_ 26 MLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAA 103 (112)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHhhhccc--ccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCHHHH
Confidence 34444444444444444422 1113344444444444444444444444444 2233 233444444444444444444
Q ss_pred HHHHHH
Q 048364 339 ERVIKQ 344 (400)
Q Consensus 339 ~~~~~~ 344 (400)
.+.+++
T Consensus 104 ~~~l~~ 109 (112)
T d1hxia_ 104 LASLRA 109 (112)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.24 E-value=7.4e-06 Score=60.92 Aligned_cols=86 Identities=13% Similarity=0.052 Sum_probs=69.5
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHH
Q 048364 286 RIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICD 363 (400)
Q Consensus 286 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 363 (400)
....|..+..+|.+.|++++|+..+++. .+.| +...|..+..++...|++++|...|+++++.. | .+..+...+..
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p-~n~~~~~~l~~ 153 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-P-EDKAIQAELLK 153 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-C-CCHHHHHHHHH
Confidence 4456777888999999999999999988 6566 56688889999999999999999999999998 8 77777777776
Q ss_pred HhhcccchHH
Q 048364 364 LYTMNEKWEG 373 (400)
Q Consensus 364 ~~~~~g~~~~ 373 (400)
+..+.....+
T Consensus 154 ~~~~l~~~~~ 163 (169)
T d1ihga1 154 VKQKIKAQKD 163 (169)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6655444433
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=1.6e-06 Score=60.40 Aligned_cols=93 Identities=5% Similarity=-0.047 Sum_probs=77.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCC-chHHHHHHHH
Q 048364 291 GCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHK---QFDMAERVIKQALRMVKPEND-GGVFTLICDL 364 (400)
Q Consensus 291 ~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~ 364 (400)
..++..+...+++++|.+.|++. ...| +..++..+..++.+.+ ++++|+.++++++..+ |.++ ..++..++.+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~-~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHH
Confidence 45788889999999999999998 4445 6678888898988755 4567999999999887 5233 3578899999
Q ss_pred hhcccchHHHHHHHHHHhcc
Q 048364 365 YTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 365 ~~~~g~~~~a~~~~~~m~~~ 384 (400)
|.+.|++++|++.|+++.+.
T Consensus 82 y~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 99999999999999999873
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.20 E-value=5.8e-06 Score=61.90 Aligned_cols=121 Identities=7% Similarity=-0.042 Sum_probs=83.0
Q ss_pred HHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhccCCc-cHHHHHHHHHHHHhcCCH
Q 048364 257 VLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEP-NVIIWGSFLAACKEHKQF 335 (400)
Q Consensus 257 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~ 335 (400)
........|++++|.+.|.....- .+....- .+ ..+.+ +...-..+ .+ ....+..+..++...|++
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL~l---~rG~~l~-----~~-~~~~w--~~~~r~~l--~~~~~~a~~~la~~~~~~g~~ 83 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAALRE---WRGPVLD-----DL-RDFQF--VEPFATAL--VEDKVLAHTAKAEAEIACGRA 83 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT---CCSSTTG-----GG-TTSTT--HHHHHHHH--HHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhh---Ccccccc-----cC-cchHH--HHHHHHHH--HHHHHHHHHHHHHHHHHCCCc
Confidence 345677889999999999988842 2211100 00 00111 11111111 11 234667788889999999
Q ss_pred HHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc-----cccccccCc
Q 048364 336 DMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN-----QNVRKARGS 392 (400)
Q Consensus 336 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~ 392 (400)
++|...++++++.. | .+...|..++.+|...|++++|++.|+++.+ .|+.|.+.+
T Consensus 84 ~~Al~~~~~al~~~-P-~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 84 SAVIAELEALTFEH-P-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHHS-T-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred hHHHHHHHHHHHhC-C-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 99999999999999 8 8889999999999999999999999998743 688887654
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.16 E-value=0.0012 Score=54.17 Aligned_cols=136 Identities=9% Similarity=0.048 Sum_probs=69.0
Q ss_pred CCCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCCCChhhHHHHHHHH
Q 048364 13 PSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPERNAVTWNTMIKGY 91 (400)
Q Consensus 13 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~ 91 (400)
.||..--..+.+.|-+.|.++.|..+|..+ .-|..++..+ +.++++.|.+.+.+.. +..+|..+...+
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~---------~d~~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~l 79 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFAC 79 (336)
T ss_dssp CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhC---------CCHHHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHHH
Confidence 455555566666777777777777777533 2245566666 7777777777665442 445666667777
Q ss_pred HcCCChHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccc
Q 048364 92 SKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLG 162 (400)
Q Consensus 92 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~ 162 (400)
.+.....-|.-. ......+......++..|-..|.+++...+++... . .-.++...++-++..+++.+
T Consensus 80 ~~~~e~~la~i~-~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~-~-~~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 80 VDGKEFRLAQMC-GLHIVVHADELEELINYYQDRGYFEELITMLEAAL-G-LERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHTTCHHHHHHT-TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T-STTCCHHHHHHHHHHHHTTC
T ss_pred HhCcHHHHHHHH-HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHH-c-CCccchHHHHHHHHHHHHhC
Confidence 666655443221 11112233444566777777777777777777665 1 12344555666666666543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.16 E-value=0.00097 Score=53.01 Aligned_cols=226 Identities=8% Similarity=-0.097 Sum_probs=121.6
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHHhhCCC-CChhhHHHHHHHHHh----cCCcchHHHHHHHHHhcCCCCCCHHHHHHH
Q 048364 80 NAVTWNTMIKGYSKSGNVCEARDFFERMPL-RNVASWSAMIAAYLN----AGAYDPGLKLFREMISNEGLTPDQMTIGAV 154 (400)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 154 (400)
|+..+..+...+.+.+++++|++.|++..+ .+..++..|...|.. ..++..|...+.... ..+ +......+
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~-~~~---~~~a~~~l 76 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKAC-DLN---YSNGCHLL 76 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTT---CHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccc-ccc---ccchhhcc
Confidence 456777788888899999999999998753 366777777777776 456777777777765 322 11222222
Q ss_pred HHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCC-CcccHHHHHHHHH----hC
Q 048364 155 LSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEER-NVISWTALICGSA----HR 229 (400)
Q Consensus 155 l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~----~~ 229 (400)
...+..... ...+.+.|...++...+. .......+...+. ..
T Consensus 77 ~~~~~~~~~---------------------------------~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~ 123 (265)
T d1ouva_ 77 GNLYYSGQG---------------------------------VSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVT 123 (265)
T ss_dssp HHHHHHTSS---------------------------------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSC
T ss_pred ccccccccc---------------------------------cchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCccc
Confidence 222211100 012233333333332221 1111111111221 12
Q ss_pred CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHh----cC
Q 048364 230 GYSEDALSLFEMMQATGVKPNEMTFTGVLTACVH----TGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK----AG 301 (400)
Q Consensus 230 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g 301 (400)
.....+...+...... .+...+..+...+.. ..+...+..+++...+ ..+......+...|.. ..
T Consensus 124 ~~~~~a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~----~g~~~A~~~lg~~y~~g~~~~~ 196 (265)
T d1ouva_ 124 RDFKKAVEYFTKACDL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACD----LKDSPGCFNAGNMYHHGEGATK 196 (265)
T ss_dssp CCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTCSSCC
T ss_pred chhHHHHHHhhhhhcc---cccchhhhhhhhhccCCCcccccccchhhhhcccc----ccccccccchhhhcccCccccc
Confidence 2334445555444443 234445555555554 3344555566665553 2244555555555554 45
Q ss_pred ChHHHHHHHHhccCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 048364 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKE----HKQFDMAERVIKQALRMV 349 (400)
Q Consensus 302 ~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 349 (400)
++++|...|++....-+...+..|...|.+ ..+.++|.++|++....|
T Consensus 197 d~~~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 197 NFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred chhhhhhhHhhhhcccCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 788888888877111234455556666654 337788888888888877
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.16 E-value=1.4e-05 Score=58.13 Aligned_cols=64 Identities=9% Similarity=-0.046 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhcc
Q 048364 319 VIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 319 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
..+|..+..+|.+.|++++|+..++++++.+ | .+..+|..++.++...|++++|...|++..+.
T Consensus 67 ~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p-~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 67 ISCNLNLATCYNKNKDYPKAIDHASKVLKID-K-NNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHhcccchhhhhhhcccccc-c-hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3477888999999999999999999999999 8 89999999999999999999999999998764
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=2.5e-05 Score=54.80 Aligned_cols=94 Identities=12% Similarity=0.038 Sum_probs=55.1
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCC-----hhhHHHH
Q 048364 219 WTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR-----IQHYGCM 293 (400)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l 293 (400)
+..+...+.+.|++++|+..|.+.++.+ +.+...+..+..+|.+.|++++|...++.+.+-..-.+. ..+|..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 3345566666777777777777666653 224566666666777777777777777665531100111 1244555
Q ss_pred HHHHHhcCChHHHHHHHHhc
Q 048364 294 VDLFGKAGFLEEAYEVIRTM 313 (400)
Q Consensus 294 ~~~~~~~g~~~~a~~~~~~~ 313 (400)
...+...+++++|.+.|++.
T Consensus 86 g~~~~~~~~~~~A~~~~~ka 105 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKS 105 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHH
Confidence 55666666777777766654
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.07 E-value=1.5e-05 Score=59.12 Aligned_cols=65 Identities=11% Similarity=-0.040 Sum_probs=59.9
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhcc
Q 048364 318 NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 318 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
+...|..+..++.+.|++++|+..++++++.. | .++.+|..++.+|...|++++|...|++..+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p-~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-P-SNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-h-hhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 44567888899999999999999999999999 8 89999999999999999999999999998874
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.03 E-value=0.0022 Score=52.43 Aligned_cols=262 Identities=9% Similarity=0.037 Sum_probs=156.5
Q ss_pred cchhhhhHHHHHH-HhCCHHHHHHHHhhCCCCChhhHHHHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHHhcCC
Q 048364 49 SHVYVATSLLHEY-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGA 127 (400)
Q Consensus 49 ~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~ 127 (400)
||..--..+...| +.|.++.|..+|..+. -|..++..+.+.++++.|.+++.+.. +..+|..+...+.+...
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~-----d~~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~l~~~~e 84 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKE 84 (336)
T ss_dssp C----------------CTTTHHHHHHHTT-----CHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTC
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC-----CHHHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHHHHhCcH
Confidence 5555566677778 8999999999998665 46778888889999999999888654 56688888888887765
Q ss_pred cchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHH
Q 048364 128 YDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMV 207 (400)
Q Consensus 128 ~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 207 (400)
..-| .+. ......+......++..|-..|.++. ...+++..... -..+...++.++..|++.+ .++..+.
T Consensus 85 ~~la-----~i~-~~~~~~~~d~l~~~v~~ye~~~~~e~--Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~-~~kl~e~ 154 (336)
T d1b89a_ 85 FRLA-----QMC-GLHIVVHADELEELINYYQDRGYFEE--LITMLEAALGL-ERAHMGMFTELAILYSKFK-PQKMREH 154 (336)
T ss_dssp HHHH-----HHT-TTTTTTCHHHHHHHHHHHHHTTCHHH--HHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC-HHHHHHH
T ss_pred HHHH-----HHH-HHHhhcCHHHHHHHHHHHHHcCChHH--HHHHHHHHHcC-CccchHHHHHHHHHHHHhC-hHHHHHH
Confidence 5432 222 22344566666788888888888888 77777766533 2446667888888888865 3444555
Q ss_pred HHhccC-----------CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHH
Q 048364 208 FELMEE-----------RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKM 276 (400)
Q Consensus 208 ~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 276 (400)
++.... .....|..++-.|.+.|+++.|..++ ... .++.......+..+.+..+.+...++...
T Consensus 155 l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~---i~~--~~~~~~~~~f~e~~~k~~N~e~~~~~i~~ 229 (336)
T d1b89a_ 155 LELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM---MNH--PTDAWKEGQFKDIITKVANVELYYRAIQF 229 (336)
T ss_dssp HHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH---HHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHH
T ss_pred HHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHH---HHc--chhhhhHHHHHHHHHccCChHHHHHHHHH
Confidence 544322 12234556666666777777666543 222 23333445566667778888777777766
Q ss_pred hhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhcc-------------CCccHHHHHHHHHHHHhcCCHHH
Q 048364 277 IDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMR-------------LEPNVIIWGSFLAACKEHKQFDM 337 (400)
Q Consensus 277 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------------~~p~~~~~~~l~~~~~~~~~~~~ 337 (400)
.... .| ...+.++......-+..+..+.+++-+ -..+..+.+++...|...++++.
T Consensus 230 yL~~---~p--~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n~~~vn~al~~lyie~~d~~~ 298 (336)
T d1b89a_ 230 YLEF---KP--LLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQA 298 (336)
T ss_dssp HHHH---CG--GGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHc---CH--HHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcChHHHHHHHHHHHhCcchhHH
Confidence 6532 23 345566666666666666666665541 11133455566666666666544
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.99 E-value=4.1e-05 Score=56.63 Aligned_cols=63 Identities=10% Similarity=0.061 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhcc
Q 048364 320 IIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 320 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
.+|..+..+|.+.|++++|+..+++++... | .+..++..++.++...|++++|...|+++.+.
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p-~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLD-S-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcc-c-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456778889999999999999999999999 8 89999999999999999999999999998763
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.90 E-value=3e-06 Score=75.05 Aligned_cols=113 Identities=7% Similarity=-0.145 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHH
Q 048364 250 NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLA 327 (400)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~ 327 (400)
+...+..+...+.+.|+.+.|...++..... . ...++..+...+...|++++|...|++. .+.| +...|+.+..
T Consensus 119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~-~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~ 194 (497)
T d1ya0a1 119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSY---I-CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAI 194 (497)
T ss_dssp ------------------------CCHHHHH---H-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHH
T ss_pred hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC---C-HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence 3445556666666777777777666555421 1 1245666777777777777777777777 5555 3457777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcc
Q 048364 328 ACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368 (400)
Q Consensus 328 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 368 (400)
.+...|+..+|...|.+.+... | |.+.++..|...+.+.
T Consensus 195 ~~~~~~~~~~A~~~y~ral~~~-~-~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 195 LASSKGDHLTTIFYYCRSIAVK-F-PFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHHTTCHHHHHHHHHHHHSSS-B-CCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhCC-C-CCHHHHHHHHHHHHHh
Confidence 7777777777777777777777 6 6777777777666543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.84 E-value=4.9e-06 Score=73.67 Aligned_cols=220 Identities=9% Similarity=-0.050 Sum_probs=119.7
Q ss_pred HHHHHHhhCC--CC-ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHH-HHHHHHHHhhcccchhhhhhhhhhh
Q 048364 99 EARDFFERMP--LR-NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQM-TIGAVLSGCSHLGSVGLLMGKSAHG 174 (400)
Q Consensus 99 ~a~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~ll~~~~~~~~~~~~~a~~~~~ 174 (400)
+|.+.|++.. +| ...++..+..++...|++++| |+++. . ..|+.. .++. ...+-+ ..+.. +.+.++
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i-~--~dp~~a~~~~~-e~~Lw~-~~y~~--~ie~~r 73 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKML-V--TDLEYALDKKV-EQDLWN-HAFKN--QITTLQ 73 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHH-H--HCHHHHHHHTH-HHHHHH-HHTHH--HHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHH-H--cChhhHHHHhH-HHHHHH-HHHHH--HHHHHH
Confidence 5777777765 33 456777778888888888776 66665 1 133321 1111 000000 11122 333444
Q ss_pred HHHhccccchHHHHH--HHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCC
Q 048364 175 FIVKNEWELNEQIAT--ILVDMYAKCGFLKYALMVFELMEE---RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKP 249 (400)
Q Consensus 175 ~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 249 (400)
...+....++..-.. .+...+...+.++.|...+....+ ++...+..+...+.+.|+.++|...+.+.....
T Consensus 74 ~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--- 150 (497)
T d1ya0a1 74 GQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--- 150 (497)
T ss_dssp HHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHH---
T ss_pred HhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---
Confidence 444433233322111 122223345667777776665544 355677788888899999999998887765431
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-c-CCccHHHHHHHHH
Q 048364 250 NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-R-LEPNVIIWGSFLA 327 (400)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~-~~p~~~~~~~l~~ 327 (400)
...++..+...+...+++++|...|++..+. .+.+...|+.+...+...|+..+|...|.+. . ..|-..++..|..
T Consensus 151 ~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~ 228 (497)
T d1ya0a1 151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQK 228 (497)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 1356777888999999999999999999853 2446689999999999999999999999988 3 3466778888887
Q ss_pred HHHhcC
Q 048364 328 ACKEHK 333 (400)
Q Consensus 328 ~~~~~~ 333 (400)
.+.+..
T Consensus 229 ~~~~~~ 234 (497)
T d1ya0a1 229 ALSKAL 234 (497)
T ss_dssp HHHHHT
T ss_pred HHHHhh
Confidence 776543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.78 E-value=3.6e-05 Score=55.30 Aligned_cols=75 Identities=16% Similarity=0.182 Sum_probs=44.0
Q ss_pred hHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhccc
Q 048364 303 LEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHK-----------QFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNE 369 (400)
Q Consensus 303 ~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 369 (400)
+++|...|++. .+.| +..+|..+..+|...| .+++|.+.|+++++.. | .+......|...
T Consensus 57 ~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~-P-~~~~~~~~L~~~----- 129 (145)
T d1zu2a1 57 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ-P-DNTHYLKSLEMT----- 129 (145)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC-T-TCHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccC-C-CHHHHHHHHHHH-----
Confidence 34555555555 3444 3445555555555443 3688999999999988 7 555444444333
Q ss_pred chHHHHHHHHHHhcccc
Q 048364 370 KWEGAERVRKLMLNQNV 386 (400)
Q Consensus 370 ~~~~a~~~~~~m~~~~~ 386 (400)
..|.+++.+..++|+
T Consensus 130 --~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 130 --AKAPQLHAEAYKQGL 144 (145)
T ss_dssp --HTHHHHHHHHHHSSS
T ss_pred --HHHHHHHHHHHHHhc
Confidence 455566666555553
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.74 E-value=0.00017 Score=47.27 Aligned_cols=72 Identities=11% Similarity=-0.046 Sum_probs=53.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhc-c-------CCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHH
Q 048364 289 HYGCMVDLFGKAGFLEEAYEVIRTM-R-------LEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359 (400)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~-~-------~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 359 (400)
.+-.+...+.+.|++++|...|++. . ..+ ...+++.+..++.+.|++++|...++++++.. | .++.++.
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~-P-~~~~a~~ 84 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-P-EHQRANG 84 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-TCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC-c-CCHHHHH
Confidence 3445677777888888887777766 1 112 24578888888999999999999999999988 8 7777776
Q ss_pred HHH
Q 048364 360 LIC 362 (400)
Q Consensus 360 ~l~ 362 (400)
.+.
T Consensus 85 Nl~ 87 (95)
T d1tjca_ 85 NLK 87 (95)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.72 E-value=0.00063 Score=50.44 Aligned_cols=124 Identities=8% Similarity=-0.021 Sum_probs=84.1
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHh
Q 048364 220 TALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299 (400)
Q Consensus 220 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 299 (400)
..........|++++|...|.+....- ++.. +......+-+...-..+.. .....+..++.++.+
T Consensus 15 ~~~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~--------l~~~~~~~w~~~~r~~l~~-----~~~~a~~~la~~~~~ 79 (179)
T d2ff4a2 15 KTAGVHAAAAGRFEQASRHLSAALREW--RGPV--------LDDLRDFQFVEPFATALVE-----DKVLAHTAKAEAEIA 79 (179)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC--CSST--------TGGGTTSTTHHHHHHHHHH-----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhC--cccc--------cccCcchHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 344567788999999999999998752 1111 0111111111111222221 123567778899999
Q ss_pred cCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCCchHHH
Q 048364 300 AGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALR-----MVKPENDGGVFT 359 (400)
Q Consensus 300 ~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 359 (400)
.|++++|+..++.+ ...| +...|..++.+|...|+.++|++.|+++.+ .| ..|++.+-.
T Consensus 80 ~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG-~~P~~~l~~ 145 (179)
T d2ff4a2 80 CGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLG-IDPGPTLRA 145 (179)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHS-CCCCHHHHH
T ss_pred CCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhC-CCcCHHHHH
Confidence 99999999999998 5566 677899999999999999999999998754 56 436665533
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.70 E-value=0.00013 Score=58.06 Aligned_cols=126 Identities=10% Similarity=0.001 Sum_probs=83.1
Q ss_pred HHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCC-hhhHHHHHHHHHhcCChH
Q 048364 226 SAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR-IQHYGCMVDLFGKAGFLE 304 (400)
Q Consensus 226 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 304 (400)
..+.|++++|+..+++.++.. +-|...+..+...++..|++++|.+.++...+. .|+ ...+..+...+...+..+
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccccH
Confidence 346788888998888888873 336678888888888899999998888888743 443 344444555554444444
Q ss_pred HHHHHHHhc--cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchH
Q 048364 305 EAYEVIRTM--RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357 (400)
Q Consensus 305 ~a~~~~~~~--~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 357 (400)
++..-.... -..| +...+......+...|+.++|..+++++.+.. | ..+..
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~-p-~~~~~ 135 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR-Q-EKGFL 135 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-C-CCCEE
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-C-CCCcc
Confidence 443322222 1123 33344555666778889999999999888887 6 44333
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.69 E-value=0.00048 Score=49.90 Aligned_cols=92 Identities=14% Similarity=0.030 Sum_probs=58.6
Q ss_pred HHHHHhcCChhhHHHHHHHhhhhcCCCCC----------hhhHHHHHHHHHhcCChHHHHHHHHhc--------cCCcc-
Q 048364 258 LTACVHTGLVDEGRKYFKMIDEEYDLEPR----------IQHYGCMVDLFGKAGFLEEAYEVIRTM--------RLEPN- 318 (400)
Q Consensus 258 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~a~~~~~~~--------~~~p~- 318 (400)
...+...|++++|++.|++...-..-.|+ ..+|+.+..+|...|++++|.+.+++. ...++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 33455567777777777766642222221 245667777788888887777777665 11121
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 319 ----VIIWGSFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 319 ----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
...++.+..+|...|++++|+..|+++++..
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~ 130 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 130 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2246667788888888888888888877653
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.68 E-value=2e-05 Score=62.83 Aligned_cols=120 Identities=10% Similarity=0.032 Sum_probs=84.5
Q ss_pred HHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCccH-HHHHHHHHHHHhcCCHHHH
Q 048364 261 CVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNV-IIWGSFLAACKEHKQFDMA 338 (400)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a 338 (400)
..+.|++++|+..+++..+ .-+.+...+..++..|+..|++++|.+.++.. ...|+. ..+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence 4567999999999999995 33557889999999999999999999999998 667754 4454454454444444333
Q ss_pred HHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 339 ERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
..-.......+ +++....+...+..+...|++++|.+.++++.+
T Consensus 84 ~~~~~~~~~~~-~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e 127 (264)
T d1zbpa1 84 AQGAATAKVLG-ENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 127 (264)
T ss_dssp TTSCCCEECCC-SCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhhhhccc-CchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 22222211122 213445555666778889999999999988865
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.66 E-value=0.00012 Score=53.20 Aligned_cols=97 Identities=15% Similarity=0.010 Sum_probs=74.4
Q ss_pred hhHHHH--HHHHHhcCChHHHHHHHHhc----cCCc----------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-
Q 048364 288 QHYGCM--VDLFGKAGFLEEAYEVIRTM----RLEP----------NVIIWGSFLAACKEHKQFDMAERVIKQALRMVK- 350 (400)
Q Consensus 288 ~~~~~l--~~~~~~~g~~~~a~~~~~~~----~~~p----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~- 350 (400)
.+|..+ ...+.+.|++++|++.|++. ...| ....|+.+..+|...|++++|...+++.++...
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~ 87 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 87 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence 345555 45667889999999999987 1122 245788999999999999999999999987530
Q ss_pred -----CC---CCchHHHHHHHHhhcccchHHHHHHHHHHhcc
Q 048364 351 -----PE---NDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 351 -----~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
+. ....++..++.+|...|++++|.+.|++..+.
T Consensus 88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 88 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 10 11236778899999999999999999998763
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.51 E-value=8.1e-05 Score=53.37 Aligned_cols=83 Identities=13% Similarity=0.108 Sum_probs=57.0
Q ss_pred hcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHh----------cCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhh
Q 048364 299 KAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKE----------HKQFDMAERVIKQALRMVKPENDGGVFTLICDLYT 366 (400)
Q Consensus 299 ~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~----------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 366 (400)
+.+.+++|.+.|+.. .+.| +...+..+..+|.. .+.+++|+..++++++.+ | .+..+|..++.+|.
T Consensus 9 r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P-~~~~a~~~lG~~y~ 86 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-P-KKDEAVWCIGNAYT 86 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-T-TCHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-c-hhhHHHhhHHHHHH
Confidence 334455555555555 3333 33344444444432 345689999999999999 9 89999999999998
Q ss_pred cccc-----------hHHHHHHHHHHhc
Q 048364 367 MNEK-----------WEGAERVRKLMLN 383 (400)
Q Consensus 367 ~~g~-----------~~~a~~~~~~m~~ 383 (400)
..|+ +++|.+.|++..+
T Consensus 87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~ 114 (145)
T d1zu2a1 87 SFAFLTPDETEAKHNFDLATQFFQQAVD 114 (145)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HcccchhhHHHHHHhHHHhhhhhhcccc
Confidence 7654 6778888887765
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.30 E-value=0.041 Score=47.06 Aligned_cols=321 Identities=8% Similarity=0.002 Sum_probs=157.3
Q ss_pred hcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH---HhCCHHHHHHHHhhCCC-C-ChhhHHHHHHHHHcCCChHHH
Q 048364 26 CTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY---VVTSFGFARKLFDELPE-R-NAVTWNTMIKGYSKSGNVCEA 100 (400)
Q Consensus 26 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~g~~~~a~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a 100 (400)
..+.|+...+.++...+... | ..-|-.....- ......+....+++-+. | ....-...+..+.+.++++..
T Consensus 16 a~~~~~~~~~~~~~~~L~dy---p-L~pYl~~~~l~~~~~~~~~~~i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~w~~~ 91 (450)
T d1qsaa1 16 AWDNRQMDVVEQMMPGLKDY---P-LYPYLEYRQITDDLMNQPAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGL 91 (450)
T ss_dssp HHHTTCHHHHHHHSGGGTTS---T-THHHHHHHHHHHTGGGCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHHhhhcCC---C-CHHHHHHHHHHhccccCCHHHHHHHHHHCCCChhHHHHHHHHHHHHHhccCHHHH
Confidence 44567777777776665321 1 22232222222 34456667777766553 2 112233446677888999887
Q ss_pred HHHHhhCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhcc
Q 048364 101 RDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180 (400)
Q Consensus 101 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~ 180 (400)
+..+..- ..+...-.....+..+.|+.+.|.+.+..+-......|+ .+..+...+.+.|..
T Consensus 92 ~~~~~~~-p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~--~c~~l~~~~~~~~~l---------------- 152 (450)
T d1qsaa1 92 LAFSPEK-PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPN--ACDKLFSVWRASGKQ---------------- 152 (450)
T ss_dssp HHHCCSC-CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCT--HHHHHHHHHHHTTCS----------------
T ss_pred HHhccCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCch--HHHHHHHHHHhcCCC----------------
Confidence 7766542 234554556777888899999999988877633334444 222333333322222
Q ss_pred ccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048364 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTA 260 (400)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 260 (400)
+...+-.-+......|+...|..+...+...........+..... ...+.... ... .++......+..+
T Consensus 153 ---t~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~---p~~~~~~~---~~~--~~~~~~~~~~~~~ 221 (450)
T d1qsaa1 153 ---DPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFA---RTT--GATDFTRQMAAVA 221 (450)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHH---HHS--CCCHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhC---hHhHHHHH---hcC--CCChhhhHHHHHH
Confidence 222223344455566777777777776654333333333333221 22222211 111 1222222223333
Q ss_pred HHh--cCChhhHHHHHHHhhhhcCCCCChhh--HHHHHHHHHhcCChHHHHHHHHhc-cCCccHHHHHHHHHHHHhcCCH
Q 048364 261 CVH--TGLVDEGRKYFKMIDEEYDLEPRIQH--YGCMVDLFGKAGFLEEAYEVIRTM-RLEPNVIIWGSFLAACKEHKQF 335 (400)
Q Consensus 261 ~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~ 335 (400)
+.+ ..+.+.+...+..........++... ...+...+...+..+.+...+... ....+.....-.+......+++
T Consensus 222 l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~al~~~~~ 301 (450)
T d1qsaa1 222 FASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDR 301 (450)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHHHHHcCCh
Confidence 322 23555666666655543222221110 111112222344555555555544 2122333333334444555666
Q ss_pred HHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHh
Q 048364 336 DMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLML 382 (400)
Q Consensus 336 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 382 (400)
..+...++.+... +...+....-+++++...|+.++|...|....
T Consensus 302 ~~~~~~~~~l~~~--~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a 346 (450)
T d1qsaa1 302 RGLNTWLARLPME--AKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (450)
T ss_dssp HHHHHHHHHSCTT--GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcc--cccHHHHHHHHHHHHHHcCChhhHHHHHHHHh
Confidence 6666666655322 22344555566666666666666666666554
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.99 E-value=0.021 Score=38.06 Aligned_cols=141 Identities=9% Similarity=0.013 Sum_probs=99.6
Q ss_pred HHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHH
Q 048364 226 SAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEE 305 (400)
Q Consensus 226 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 305 (400)
+...|..++..+++.+.... .+..-||.++--....-+-+...++++.+-+-+.+.|-. ....++.++...+
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~-Nlk~vv~C~~~~n---- 83 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQ-NLKSVVECGVINN---- 83 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCS-CTHHHHHHHHHTT----
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchhhh-cHHHHHHHHHHhc----
Confidence 45567788888888777664 256667777777777777777777777776543333221 1223344444433
Q ss_pred HHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhccc
Q 048364 306 AYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQN 385 (400)
Q Consensus 306 a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 385 (400)
.+...++..+.....+|+-+.-.++++.+.+.+ - +++.....+..+|.+-|...++.+++.+.-+.|
T Consensus 84 -----------~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~-i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 84 -----------TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-E-VSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp -----------CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-C-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred -----------chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-C-CCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 233455667788889999999999999987766 4 688899999999999999999999999998888
Q ss_pred cc
Q 048364 386 VR 387 (400)
Q Consensus 386 ~~ 387 (400)
++
T Consensus 151 ~K 152 (161)
T d1wy6a1 151 EK 152 (161)
T ss_dssp CH
T ss_pred HH
Confidence 75
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.95 E-value=0.0012 Score=42.95 Aligned_cols=62 Identities=16% Similarity=0.096 Sum_probs=52.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------CCchHHHHHHHHhhcccchHHHHHHHHHHhcc
Q 048364 322 WGSFLAACKEHKQFDMAERVIKQALRMVKPE------NDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 322 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
+-.+...+.+.|++++|...++++++.. |. ....++..++.+|.+.|++++|+..++++.+.
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~-~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQL-DEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHH-hhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 3457888999999999999999998764 21 12467899999999999999999999998864
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.25 E-value=0.036 Score=38.17 Aligned_cols=82 Identities=6% Similarity=-0.136 Sum_probs=41.6
Q ss_pred CChHHHHHHHHhccCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhc----ccchH
Q 048364 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKE----HKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTM----NEKWE 372 (400)
Q Consensus 301 g~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~ 372 (400)
.+.++|.+.+++.--.-+......|...|.. ..+.++|.++|++..+.+ ++.....|...|.. ..+.+
T Consensus 37 ~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g----~~~a~~~Lg~~y~~G~gv~~d~~ 112 (133)
T d1klxa_ 37 INKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN----DQDGCLILGYKQYAGKGVVKNEK 112 (133)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred cCHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC----cchHHHHHHHHHHcCCccCCCHH
Confidence 3455555555554111122333333333332 335666666666666655 23445555555554 34666
Q ss_pred HHHHHHHHHhcccc
Q 048364 373 GAERVRKLMLNQNV 386 (400)
Q Consensus 373 ~a~~~~~~m~~~~~ 386 (400)
+|.+++++..+.|.
T Consensus 113 ~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 113 QAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCC
Confidence 66666666665554
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.39 E-value=0.18 Score=34.39 Aligned_cols=110 Identities=9% Similarity=-0.093 Sum_probs=65.7
Q ss_pred ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHh----cCChHHH
Q 048364 231 YSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK----AGFLEEA 306 (400)
Q Consensus 231 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a 306 (400)
++++|++.|++..+.|.. .....+. .....+.++|.+++++..+. | ++.....|...|.. ..+.++|
T Consensus 8 d~~~A~~~~~kaa~~g~~---~a~~~l~--~~~~~~~~~a~~~~~~aa~~-g---~~~a~~~Lg~~y~~g~~~~~d~~~A 78 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM---FGCLSLV--SNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLRKA 78 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT---THHHHHH--TCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHHCCCh---hhhhhhc--cccccCHHHHHHHHhhhhcc-c---chhhhhhHHHhhhhccccchhhHHH
Confidence 456677777776666522 1222222 22345677777777777642 2 44455556666554 4567888
Q ss_pred HHHHHhccCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 048364 307 YEVIRTMRLEPNVIIWGSFLAACKE----HKQFDMAERVIKQALRMV 349 (400)
Q Consensus 307 ~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 349 (400)
.++|++.--.-+......|...|.. ..+.++|..++++..+.+
T Consensus 79 ~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 79 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 8888887111233344445555554 457888999999888887
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.31 E-value=0.067 Score=35.82 Aligned_cols=71 Identities=13% Similarity=0.049 Sum_probs=47.5
Q ss_pred CChhhHHHHHHHHHhcC---ChHHHHHHHHhc-cCCc-cH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchH
Q 048364 285 PRIQHYGCMVDLFGKAG---FLEEAYEVIRTM-RLEP-NV-IIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357 (400)
Q Consensus 285 ~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~-~~~p-~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 357 (400)
++..+--...-++.+.. +.++++.++++. ...| +. ..+-.|.-+|.+.|++++|.+.++.+++.. | .+..+
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ie-P-~n~qA 109 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE-R-NNKQV 109 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-T-TCHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC-C-CcHHH
Confidence 44445444555566544 456788888887 3344 32 455667778888889999999999988888 7 55443
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.51 E-value=0.62 Score=30.97 Aligned_cols=69 Identities=17% Similarity=-0.006 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHHHhcC---ChhhHHHHHHHhhhhcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHhc-cCCccH
Q 048364 249 PNEMTFTGVLTACVHTG---LVDEGRKYFKMIDEEYDLEPR-IQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNV 319 (400)
Q Consensus 249 p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~ 319 (400)
|+..|--....++.+.. +.++++.+++.+.+. .+.+ ...+-.|.-+|.+.|++++|.+.++.+ .+.|+.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~--~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n 106 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 106 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCc
Confidence 44444444555555443 345666677666642 1222 234455666677777777777777766 555543
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=93.49 E-value=0.62 Score=30.93 Aligned_cols=136 Identities=10% Similarity=0.048 Sum_probs=89.5
Q ss_pred HHhcCCHHHHHHHHHhccC-CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 048364 195 YAKCGFLKYALMVFELMEE-RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKY 273 (400)
Q Consensus 195 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 273 (400)
+.-.|..++..+++.+... .+..-||-+|.-....-+-+-....++..-.. .|. ...++.......
T Consensus 12 ~ildG~ve~Gveii~k~~~ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDl----------s~C~Nlk~vv~C 78 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVEC 78 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHHH
T ss_pred HHHhhhHHhHHHHHHHHcccCCccccceeeeecccccchHHHHHHHHHHhhh---cCc----------hhhhcHHHHHHH
Confidence 4567889999999888776 45556777776666666666666666655331 121 122333333333
Q ss_pred HHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc--cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 274 FKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM--RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
+-.+- .+...+...++.+..+|+-+.-.++++++ .-+|++...-.+..+|.+.|+..++-+++.++.+.|
T Consensus 79 ~~~~n------~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 79 GVINN------TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHTT------CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHhc------chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 32222 13344555667777888888888888875 456777777888888888888888888888888887
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.30 E-value=0.72 Score=28.89 Aligned_cols=63 Identities=8% Similarity=0.149 Sum_probs=48.7
Q ss_pred ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHH
Q 048364 231 YSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295 (400)
Q Consensus 231 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 295 (400)
+.-++.+-+..+......|++....+.+++|.+.+++..|.++++.++.+.+. +...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~--~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC--cHHHHHHHHH
Confidence 44556666777777788999999999999999999999999999998865443 3456666544
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.53 E-value=2.1 Score=26.72 Aligned_cols=56 Identities=21% Similarity=0.371 Sum_probs=40.8
Q ss_pred HHHHHHHhc---cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHH
Q 048364 305 EAYEVIRTM---RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLIC 362 (400)
Q Consensus 305 ~a~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 362 (400)
++.+-++.+ .+.|+..+..+.+++|.+.+++..|.++++-+..+-.+ +...|..++
T Consensus 24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~--~k~~y~yil 82 (105)
T d1v54e_ 24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVI 82 (105)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC--cHHHHHHHH
Confidence 444444444 77888888899999999999999999999888877633 345665544
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=87.22 E-value=7.2 Score=32.44 Aligned_cols=303 Identities=9% Similarity=-0.005 Sum_probs=160.9
Q ss_pred HHHHHH-HhCCHHHHHHHHhhCCCCChhhHHHHHHHHHcCCChHHHHHHHhhCC---CCChhhHHHHHHHHHhcCCc---
Q 048364 56 SLLHEY-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMP---LRNVASWSAMIAAYLNAGAY--- 128 (400)
Q Consensus 56 ~l~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~--- 128 (400)
..+..+ +.+++......+..-+ .+...-.....+....|+.++|.+.+..+- ...+.....+...+.+.|..
T Consensus 77 ~~l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~~~lt~~ 155 (450)
T d1qsaa1 77 RFVNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPL 155 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCCCHH
Confidence 344555 7778877666554322 244444566677778888888877765432 11233334444444444433
Q ss_pred ---------------chHHHHHHHHHhcCCCCCCHH-HHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHH
Q 048364 129 ---------------DPGLKLFREMISNEGLTPDQM-TIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILV 192 (400)
Q Consensus 129 ---------------~~a~~~~~~m~~~~~~~p~~~-~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 192 (400)
..|..+... +.++.. .....+........ +........ .+......+.
T Consensus 156 ~~~~R~~~~l~~~~~~~a~~l~~~------l~~~~~~~~~a~~~l~~~p~~--------~~~~~~~~~--~~~~~~~~~~ 219 (450)
T d1qsaa1 156 AYLERIRLAMKAGNTGLVTVLAGQ------MPADYQTIASAIISLANNPNT--------VLTFARTTG--ATDFTRQMAA 219 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHT------CCGGGHHHHHHHHHHHHCGGG--------HHHHHHHSC--CCHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhhHHHHHhh------CChhHHHHHHHHHHHHhChHh--------HHHHHhcCC--CChhhhHHHH
Confidence 333332221 122221 22222222221111 111111111 1122222222
Q ss_pred HHHHh--cCCHHHHHHHHHhccCC---CcccH----HHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048364 193 DMYAK--CGFLKYALMVFELMEER---NVISW----TALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVH 263 (400)
Q Consensus 193 ~~~~~--~g~~~~A~~~~~~~~~~---~~~~~----~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 263 (400)
.++.+ ..+.+.|...+...... +...+ ..+...+...+..+.+...+......+. +.......+.....
T Consensus 220 ~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~w~~~~al~ 297 (450)
T d1qsaa1 220 VAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALG 297 (450)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHH
T ss_pred HHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc--chHHHHHHHHHHHH
Confidence 22222 34667777777665431 11111 1222233345666777777766655532 33434444555566
Q ss_pred cCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc---------------cCC-----------c
Q 048364 264 TGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM---------------RLE-----------P 317 (400)
Q Consensus 264 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---------------~~~-----------p 317 (400)
.+++..+...+..+... ......-.-=+.+++...|+.+.|...|... |.+ +
T Consensus 298 ~~~~~~~~~~~~~l~~~--~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~ 375 (450)
T d1qsaa1 298 TGDRRGLNTWLARLPME--AKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNV 375 (450)
T ss_dssp HTCHHHHHHHHHHSCTT--GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCC
T ss_pred cCChHHHHHHHHhcCcc--cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcCCChHHHHHHHHcCCCCCCCcCCCCccH
Confidence 78888888888777532 1222333344677788888888888888775 110 0
Q ss_pred c-HH---HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 318 N-VI---IWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 318 ~-~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
. .. .-..-+..+...|....|...+..+.... ++.-...++....+.|.++.|+....+...
T Consensus 376 ~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~----~~~~~~~la~lA~~~g~~~~aI~a~~~~~~ 441 (450)
T d1qsaa1 376 DSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK----SKTEQAQLARYAFNNQWWDLSVQATIAGKL 441 (450)
T ss_dssp CCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred HHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC----CHHHHHHHHHHHHHCCChhHHHHHHHHHHc
Confidence 0 00 01123456778899999999998887543 455677888889999999999988776643
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