Citrus Sinensis ID: 048403

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300
MDAISSMEFDYVASGHYANVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLTIPMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILEAWDDQGFPVCKKALEIARMEDKSKLGKPVKIKVKLQTPMEFDNNKGIESSRNLFNGQNGVVENRNTTSQVQEEAIPRFPGNWMHKLSEKWTHCVA
cccHHHccccEEEccccEEEEEcccccccccccccccHHcccccHHHHHHccccccccccccccccccEEEcccccEEEEEccEEcHHHHHccccccccccEEEEEEEEccccEEEEEcccccHHccccEEEEccccccccccccccEEEEEEEcccccEEEEEEEccccEEEEEEccccccccccEEEEEEcccEEEEEEEEEHEEccccccccHHcHHEHHccccccccccEEEEEccccccEEcccccccccccccccccEEEEccccccccccccccccccHHHHHHHHHHccccc
cHHHHHccccEEEEccEEEEEccccccccccccccHHHHHHHccHHHHHHHccccccccccccccccccEEcccccEEcccccEEEEEccccccccccccccEEEEcccccccEEEEEccccccHHHHccEEEccEEEEccccccccEEEEEEEEEcccccEEEEEccccEEEEEEccccEEEccccEEEEEcccEEccccHHHHHcccccccHHHHHHHHHHHHccccccccEEEEEcccccccccccccccccccccccHHHEEcccccccccHHcccccccHHHHHHHHHHccHccc
mdaissmefdyvasghyanvvhssadhkdkpsvkdQTYFLSHLSQAQLRRLIFHLVlyprltipmegIILEaetgdflekhrgfwfytiGQHQELGLLYIVYRYVVEKDIENNIVFVSRnyysfdkkrhlfhagslkllsglppekisQLHSVFYNCSLTIEHCEDGGEDIAVVQLseddqglaAGQFAAFYqgrrclgsgvileawddqgfpVCKKALEIARMedksklgkpvkikvklqtpmefdnnkgiessrnlfngqngvvenrnttsqvqeeaiprfpgnwmhklsekwthcva
MDAISSMEFDYVASGHYANVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLTIPMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILEAWDDQGFPVCKKALEIarmedksklgkpvkikvklqtpmefdnnkgiessrnlfNGQNGVVENRNTTSQVQeeaiprfpgnwmhklsekwthcva
MDAISSMEFDYVASGHYANVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLTIPMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILEAWDDQGFPVCKKALEIARMEDKSKLGKPVKIKVKLQTPMEFDNNKGIESSRNLFNGQNGVVENRNTTSQVQEEAIPRFPGNWMHKLSEKWTHCVA
********FDYVASGHYANVV**************QTYFLSHLSQAQLRRLIFHLVLYPRLTIPMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILEAWDDQGFPVCKKALEIAR***********************************************************FPGNWMHKLSEKWT****
MDAISSMEFDYVASGHYANVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLTIPMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILEAWDDQGFPVCK********************************************************************GNWMHKLSEKWTHCVA
MDAISSMEFDYVASGHYANVVH*********SVKDQTYFLSHLSQAQLRRLIFHLVLYPRLTIPMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILEAWDDQGFPVCKKALEIARMEDKSKLGKPVKIKVKLQTPMEFDNNKGIESSRNLFNGQNGVVENRNTTSQVQEEAIPRFPGNWMHKLS********
MDAISSMEFDYVASGHYANVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLTIPMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILEAWDDQGFPVCKKALEIARMEDKSKLGKPVKIKVKLQTP*****NKGIESSRNLFNG*******************PRFPGNWMHKLSEKWTHCVA
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MDAISSMEFDYVASGHYANVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLTIPMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILEAWDDQGFPVCKKALEIARMEDKSKLGKPVKIKVKLQTPMEFDNNKGIESSRNLFNGQNGVVENRNTTSQVQEEAIPRFPGNWMHKLSEKWTHCVA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query300 2.2.26 [Sep-21-2011]
Q0SMH1355 tRNA-specific 2-thiouridy yes no 0.626 0.529 0.284 1e-20
A1R0A7354 tRNA-specific 2-thiouridy yes no 0.633 0.536 0.315 3e-20
O51625355 tRNA-specific 2-thiouridy yes no 0.63 0.532 0.272 6e-20
B7J2N7355 tRNA-specific 2-thiouridy yes no 0.63 0.532 0.272 7e-20
B2S125354 tRNA-specific 2-thiouridy yes no 0.653 0.553 0.289 8e-20
Q660I8355 tRNA-specific 2-thiouridy yes no 0.63 0.532 0.272 1e-19
B5RQ24354 tRNA-specific 2-thiouridy yes no 0.646 0.548 0.297 1e-19
B5RMM8354 tRNA-specific 2-thiouridy yes no 0.646 0.548 0.297 2e-19
Q64WG8353 tRNA-specific 2-thiouridy yes no 0.636 0.541 0.302 2e-16
Q5LFN5353 tRNA-specific 2-thiouridy yes no 0.636 0.541 0.297 4e-16
>sp|Q0SMH1|MNMA_BORAP tRNA-specific 2-thiouridylase MnmA OS=Borrelia afzelii (strain PKo) GN=mnmA PE=3 SV=1 Back     alignment and function desciption
 Score =  100 bits (249), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 117/253 (46%), Gaps = 65/253 (25%)

Query: 8   EFDYVASGHYANVVHSSADHK-----DKPSVKDQTYFLSHLSQAQLRRLIFHL------- 55
           ++D V +GHYA +   + D K      K  +KDQ+YFLSHLSQ Q+ +L F L       
Sbjct: 116 QYDLVVTGHYAKI--QTKDKKFFLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKSE 173

Query: 56  --VLYPRLTIP----------------------------MEGIILEAETGDFLEKHRGFW 85
              +   + +P                             +G I+E ETG  +  H G+W
Sbjct: 174 VRQIAKNINLPNKNRKDSQGICFLGKIKYNEFIKYHLGEKKGNIIEKETGKIIGTHNGYW 233

Query: 86  FYTIGQHQELGLLYIVYRYVVEKDIENNIVFVS--RNYYSFDKKRHLFHAGSLKLLSGLP 143
           F+T+GQ + + L    + +V+EKD+E NI+++S   NY    K++ L H   +  ++G P
Sbjct: 234 FFTVGQRRGIKLSNGPW-FVIEKDLEKNIIYISHNENYSKQAKRKFLVH--EIHWINGTP 290

Query: 144 PEKISQLHSVFYNCSLTIEHCEDG--------GEDIAVVQLSEDDQGLAAGQFAAFYQGR 195
            +        F N  + I H E           +++  + L++ D G++ GQFA FY+  
Sbjct: 291 SD--------FENFKIKIRHGEKKYSCKLKLIAKNLIEISLNKKDYGISPGQFAIFYKNT 342

Query: 196 RCLGSGVILEAWD 208
            CLG   I +  +
Sbjct: 343 ECLGGAKIFKVME 355
Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
Borrelia afzelii (strain PKo) (taxid: 390236)
EC: 2EC: .EC: 8EC: .EC: 1EC: .EC: -
>sp|A1R0A7|MNMA_BORT9 tRNA-specific 2-thiouridylase MnmA OS=Borrelia turicatae (strain 91E135) GN=mnmA PE=3 SV=1 Back     alignment and function description
>sp|O51625|MNMA_BORBU tRNA-specific 2-thiouridylase MnmA OS=Borrelia burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM 4680) GN=mnmA PE=3 SV=1 Back     alignment and function description
>sp|B7J2N7|MNMA_BORBZ tRNA-specific 2-thiouridylase MnmA OS=Borrelia burgdorferi (strain ZS7) GN=mnmA PE=3 SV=1 Back     alignment and function description
>sp|B2S125|MNMA_BORHD tRNA-specific 2-thiouridylase MnmA OS=Borrelia hermsii (strain DAH) GN=mnmA PE=3 SV=2 Back     alignment and function description
>sp|Q660I8|MNMA_BORGA tRNA-specific 2-thiouridylase MnmA OS=Borrelia garinii (strain PBi) GN=mnmA PE=3 SV=1 Back     alignment and function description
>sp|B5RQ24|MNMA_BORRA tRNA-specific 2-thiouridylase MnmA OS=Borrelia recurrentis (strain A1) GN=mnmA PE=3 SV=1 Back     alignment and function description
>sp|B5RMM8|MNMA_BORDL tRNA-specific 2-thiouridylase MnmA OS=Borrelia duttonii (strain Ly) GN=mnmA PE=3 SV=1 Back     alignment and function description
>sp|Q64WG8|MNMA2_BACFR tRNA-specific 2-thiouridylase MnmA 2 OS=Bacteroides fragilis (strain YCH46) GN=mnmA2 PE=3 SV=1 Back     alignment and function description
>sp|Q5LFN5|MNMA2_BACFN tRNA-specific 2-thiouridylase MnmA 2 OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=mnmA2 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query300
225435460 540 PREDICTED: tRNA-specific 2-thiouridylase 0.973 0.540 0.587 8e-99
297746327 544 unnamed protein product [Vitis vinifera] 0.973 0.536 0.587 1e-98
449448726 538 PREDICTED: tRNA-specific 2-thiouridylase 0.97 0.540 0.549 2e-91
255544898 497 tRNA (5-methylaminomethyl-2-thiouridylat 0.883 0.533 0.566 5e-88
356541193 488 PREDICTED: tRNA-specific 2-thiouridylase 0.843 0.518 0.554 1e-82
224055025 434 predicted protein [Populus trichocarpa] 0.856 0.592 0.551 7e-82
297852856 500 tRNA (5-methylaminomethyl-2-thiouridylat 0.816 0.49 0.539 4e-74
145336613 497 tRNA (5-methylaminomethyl-2-thiouridylat 0.77 0.464 0.547 4e-73
62320516 497 hypothetical protein [Arabidopsis thalia 0.77 0.464 0.547 4e-73
4836940 421 Unknown protein [Arabidopsis thaliana] g 0.77 0.548 0.547 4e-73
>gi|225435460|ref|XP_002282827.1| PREDICTED: tRNA-specific 2-thiouridylase mnmA-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  366 bits (939), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 204/347 (58%), Positives = 230/347 (66%), Gaps = 55/347 (15%)

Query: 1   MDAISSMEFDYVASGHYANVVHSSADHKDKPSV--------KDQTYFLSHLSQAQLRRLI 52
           MDAISS EFDYVASGHYANVVHS  D  DKPSV        KDQTYFLSHLSQ QL+RLI
Sbjct: 193 MDAISSKEFDYVASGHYANVVHSFTDQMDKPSVLELSKDMVKDQTYFLSHLSQIQLKRLI 252

Query: 53  FHLVLYPR---------LTIP----------------------------MEGIILEAETG 75
           F L   P+         L +P                             EGIILEAETG
Sbjct: 253 FPLGCIPKDEVRSLATKLDLPNRDRKDSQGICFLGKIKFSEFVARHIGEKEGIILEAETG 312

Query: 76  DFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
           D L KHRGFWFYTIGQ Q L L    + YVVEKD++NN+VFVSRNY+S DK+R LF  GS
Sbjct: 313 DLLGKHRGFWFYTIGQRQGLRLPGGPW-YVVEKDVKNNVVFVSRNYFSLDKRRRLFRVGS 371

Query: 136 LKLLSGLPPEKISQLHSV------FYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189
           LK +S  PP +I+QL         FYNCS T+E  EDG ED+AVVQLSEDDQGLAAGQF 
Sbjct: 372 LKWISREPPGQINQLQCKVRHGPGFYNCSFTMEPGEDGHEDVAVVQLSEDDQGLAAGQFT 431

Query: 190 AFYQGRRCLGSGVILEAWDDQGFPVCKKALEIARMEDKSKLGKPVKIKVKLQTPME-FDN 248
           AFYQGR C+GSGVILE+WDDQGFPVC KALEIARMEDKSKLGKPVKIKV+ +TP +  D 
Sbjct: 432 AFYQGRSCIGSGVILESWDDQGFPVCAKALEIARMEDKSKLGKPVKIKVRPETPPKGSDQ 491

Query: 249 NKGIESSRNLFNGQNGVVENRNTTSQVQEEAIPRFPGNWMHKLSEKW 295
             GI+  R L N Q  V +  + +S  + EA  RFP NW+ K+ EKW
Sbjct: 492 IDGIKLDRELANSQAAVTDEISRSS--EGEARSRFPMNWLQKIREKW 536

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297746327|emb|CBI16383.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449448726|ref|XP_004142116.1| PREDICTED: tRNA-specific 2-thiouridylase MnmA-like [Cucumis sativus] gi|449524848|ref|XP_004169433.1| PREDICTED: tRNA-specific 2-thiouridylase MnmA-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255544898|ref|XP_002513510.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, putative [Ricinus communis] gi|223547418|gb|EEF48913.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356541193|ref|XP_003539065.1| PREDICTED: tRNA-specific 2-thiouridylase mnmA-like [Glycine max] Back     alignment and taxonomy information
>gi|224055025|ref|XP_002298404.1| predicted protein [Populus trichocarpa] gi|222845662|gb|EEE83209.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297852856|ref|XP_002894309.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Arabidopsis lyrata subsp. lyrata] gi|297340151|gb|EFH70568.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|145336613|ref|NP_175542.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Arabidopsis thaliana] gi|332194528|gb|AEE32649.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|62320516|dbj|BAD95081.1| hypothetical protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|4836940|gb|AAD30642.1|AC006085_15 Unknown protein [Arabidopsis thaliana] gi|119935887|gb|ABM06024.1| At1g51310 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query300
TAIR|locus:2008291497 AT1G51310 "AT1G51310" [Arabido 0.633 0.382 0.591 2.3e-72
UNIPROTKB|O75648421 TRMU "Mitochondrial tRNA-speci 0.45 0.320 0.335 1.4e-13
UNIPROTKB|F1SM74394 TRMU "Uncharacterized protein" 0.45 0.342 0.335 2.8e-13
UNIPROTKB|E2QS09421 TRMU "Uncharacterized protein" 0.45 0.320 0.328 7.7e-13
UNIPROTKB|F6V9U0425 TRMU "Uncharacterized protein" 0.45 0.317 0.328 8.1e-13
RGD|1311229441 Trmu "tRNA 5-methylaminomethyl 0.45 0.306 0.322 2e-12
UNIPROTKB|F1N2P9417 TRMU "Uncharacterized protein" 0.45 0.323 0.322 6.1e-12
UNIPROTKB|Q5ZKW0424 TRMU "Mitochondrial tRNA-speci 0.45 0.318 0.302 1.4e-11
ZFIN|ZDB-GENE-050522-540416 trmu "tRNA 5-methylaminomethyl 0.45 0.324 0.296 3.7e-11
TIGR_CMR|BA_4625371 BA_4625 "tRNA (5-methylaminome 0.153 0.123 0.510 1.3e-10
TAIR|locus:2008291 AT1G51310 "AT1G51310" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 562 (202.9 bits), Expect = 2.3e-72, Sum P(2) = 2.3e-72
 Identities = 120/203 (59%), Positives = 145/203 (71%)

Query:    65 MEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSF 124
             MEGIILEAE+GDFL  HRGFWFYTIGQ Q L L    + YVVEKD +NN+VFVSRNYYS 
Sbjct:   300 MEGIILEAESGDFLGNHRGFWFYTIGQRQGLRLPGGPW-YVVEKDTKNNVVFVSRNYYSI 358

Query:   125 DKKRHLFHAGSLKLLSGLPPEKISQL-----HSV-FYNCSLTIEHCEDGGEDIAVVQLSE 178
             DK+R +F  GSL+  SG P  K+ +L     H   FY+CS  +E   DG  D+AVV L E
Sbjct:   359 DKRRRIFRVGSLRWNSGKPSGKVRELRCKVRHGPGFYSCSFEMEG--DG--DVAVVHLDE 414

Query:   179 DDQGLAAGQFAAFYQGRRCLGSGVILEAWDDQGFPVCKKALEIARMEDKSKLGKPVKIK- 237
             DDQGLAAGQFAAFY+G  C+GSGVILE+WDDQ FPVC KAL++A +EDK+KLGKPVKI  
Sbjct:   415 DDQGLAAGQFAAFYEGTTCIGSGVILESWDDQCFPVCAKALQLAALEDKTKLGKPVKIMT 474

Query:   238 VKLQTPMEFDNNKGIESSRNLFN 260
             +   + +E D  +   + + L N
Sbjct:   475 MPTMSSVEADTGEA-SAEQKLVN 496
GO:0004808 "tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity" evidence=ISS
GO:0005737 "cytoplasm" evidence=IEA
GO:0006396 "RNA processing" evidence=ISS
GO:0008033 "tRNA processing" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM
GO:0016740 "transferase activity" evidence=IEA
UNIPROTKB|O75648 TRMU "Mitochondrial tRNA-specific 2-thiouridylase 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SM74 TRMU "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2QS09 TRMU "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F6V9U0 TRMU "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1311229 Trmu "tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1N2P9 TRMU "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZKW0 TRMU "Mitochondrial tRNA-specific 2-thiouridylase 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050522-540 trmu "tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
TIGR_CMR|BA_4625 BA_4625 "tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.8.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00024614001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (536 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00015270001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (752 aa)
• •   • 0.891
GSVIVG00017707001
SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (381 aa)
•     • 0.861
GSVIVG00011471001
SubName- Full=Chromosome undetermined scaffold_310, whole genome shotgun sequence; (454 aa)
•     • 0.828
GSVIVG00006007001
SubName- Full=Chromosome chr4 scaffold_162, whole genome shotgun sequence; (796 aa)
•  •  • 0.826
GSVIVG00036866001
SubName- Full=Chromosome chr4 scaffold_83, whole genome shotgun sequence; (471 aa)
•  •  • 0.776
GSVIVG00037524001
SubName- Full=Chromosome undetermined scaffold_89, whole genome shotgun sequence; (396 aa)
•     • 0.767
GSVIVG00019724001
RecName- Full=Pseudouridylate synthase; EC=5.4.99.-; (304 aa)
   •  • 0.755
GSVIVG00002729001
SubName- Full=Chromosome chr1 scaffold_135, whole genome shotgun sequence; (155 aa)
•     • 0.750
GSVIVG00018292001
SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (253 aa)
•  •  • 0.742
GSVIVG00038605001
SubName- Full=Chromosome chr3 scaffold_95, whole genome shotgun sequence; (468 aa)
•  •  • 0.710

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query300
pfam03054355 pfam03054, tRNA_Me_trans, tRNA methyl transferase 3e-46
cd01998349 cd01998, tRNA_Me_trans, tRNA methyl transferase 7e-41
PRK00143346 PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA 1e-33
COG0482356 COG0482, TrmU, Predicted tRNA(5-methylaminomethyl- 8e-31
TIGR00420352 TIGR00420, trmU, tRNA (5-methylaminomethyl-2-thiou 1e-25
PRK14664362 PRK14664, PRK14664, tRNA-specific 2-thiouridylase 6e-09
PRK14665360 PRK14665, mnmA, tRNA-specific 2-thiouridylase MnmA 2e-07
>gnl|CDD|217339 pfam03054, tRNA_Me_trans, tRNA methyl transferase Back     alignment and domain information 
 Score =  158 bits (403), Expect = 3e-46
 Identities = 75/250 (30%), Positives = 104/250 (41%), Gaps = 54/250 (21%)

Query: 3   AISSMEFDYVASGHYANVVHSSAD----HKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLY 58
           A  ++  DY+A+GHYA V  +        + K   KDQ+YFLS LSQ QL +L+F L   
Sbjct: 111 AKENLGADYLATGHYARVSLNEDGESELLRGKDKNKDQSYFLSTLSQEQLAKLLFPLGEL 170

Query: 59  PRLTI-------------------------------------PMEGIILEAETGDFLEKH 81
            +  +                                        G I++ +TG+ L +H
Sbjct: 171 TKEEVRKIAKEAGLPTAKKKDSQGICFIGKRNFKDFLKRYLPVKPGDIIDIDTGEVLGEH 230

Query: 82  RGFWFYTIGQHQELGL-LYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLS 140
            G WFYTIGQ + LG+  Y    YVVEKD ENN V+V R +   D       A  L  L 
Sbjct: 231 EGIWFYTIGQRKGLGIGGYGEPWYVVEKDPENNTVYVGRGHDHEDLYSDGLRAKDLNWLG 290

Query: 141 G-LPPEKISQLH------SVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQ 193
             LP  +  +             C + +       ++   V   E  + +  GQ A FY 
Sbjct: 291 PELPTGETLRCTVKVRHRQPPVPCKVKLLD-----DNTIEVHFDEPVRAVTPGQAAVFYD 345

Query: 194 GRRCLGSGVI 203
           G RCLG G+I
Sbjct: 346 GDRCLGGGII 355

This family represents tRNA(5-methylaminomethyl-2-thiouridine)- methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. Length = 355
>gnl|CDD|238956 cd01998, tRNA_Me_trans, tRNA methyl transferase Back     alignment and domain information
>gnl|CDD|234664 PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed Back     alignment and domain information
>gnl|CDD|223558 COG0482, TrmU, Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|232968 TIGR00420, trmU, tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase Back     alignment and domain information
>gnl|CDD|173127 PRK14664, PRK14664, tRNA-specific 2-thiouridylase MnmA; Provisional Back     alignment and domain information
>gnl|CDD|173128 PRK14665, mnmA, tRNA-specific 2-thiouridylase MnmA; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 300
PF03054356 tRNA_Me_trans: tRNA methyl transferase; InterPro: 100.0
PRK14665360 mnmA tRNA-specific 2-thiouridylase MnmA; Provision 100.0
PRK14664362 tRNA-specific 2-thiouridylase MnmA; Provisional 100.0
KOG2805377 consensus tRNA (5-methylaminomethyl-2-thiouridylat 100.0
cd01998349 tRNA_Me_trans tRNA methyl transferase. This family 100.0
TIGR00420352 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-me 100.0
PRK00143346 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed 100.0
COG0482356 TrmU Predicted tRNA(5-methylaminomethyl-2-thiourid 100.0
PRK00074511 guaA GMP synthase; Reviewed 97.23
PRK00509399 argininosuccinate synthase; Provisional 96.64
PRK08384381 thiamine biosynthesis protein ThiI; Provisional 96.0
cd01997295 GMP_synthase_C The C-terminal domain of GMP synthe 95.94
PRK13820394 argininosuccinate synthase; Provisional 95.92
PLN00200404 argininosuccinate synthase; Provisional 95.7
PTZ00327460 eukaryotic translation initiation factor 2 gamma s 92.55
cd01992185 PP-ATPase N-terminal domain of predicted ATPase of 91.08
TIGR00552250 nadE NAD+ synthetase. NAD+ synthetase is a nearly 90.45
cd0409497 selB_III This family represents the domain of elon 88.88
PLN02347536 GMP synthetase 88.07
TIGR03680406 eif2g_arch translation initiation factor 2 subunit 87.9
PRK10512 614 selenocysteinyl-tRNA-specific translation factor; 87.49
TIGR02432189 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-t 86.7
cd0370693 mtEFTU_III Domain III of mitochondrial EF-TU (mtEF 86.15
PRK04000411 translation initiation factor IF-2 subunit gamma; 83.65
cd0370790 EFTU_III Domain III of elongation factor (EF) Tu. 83.09
TIGR00485394 EF-Tu translation elongation factor TU. This align 80.98
PLN03126478 Elongation factor Tu; Provisional 80.84
TIGR00475 581 selB selenocysteine-specific elongation factor Sel 80.18
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 Back     alignment and domain information 
Probab=100.00  E-value=9.5e-65  Score=489.49  Aligned_cols=198  Identities=35%  Similarity=0.559  Sum_probs=149.7

Q ss_pred             ChhhHh-CCCcEEecCcceEEeecC--C---CCCCCCCCCCcceEecccCHHHHhhhcccCCCCcc---------CCCC-
Q 048403            1 MDAISS-MEFDYVASGHYANVVHSS--A---DHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPR---------LTIP-   64 (300)
Q Consensus         1 ~e~a~~-lGad~VATGHYAri~~~~--~---~~~~~D~~KDQSYFLs~L~q~qL~rllFPLG~l~K---------~gLp-   64 (300)
                      +++|++ +|||+||||||||+....  .   +.++.|+.||||||||+|++++|+++|||||+++|         +||+ 
T Consensus       108 ~~~a~~~~g~d~iATGHYAri~~~~~~~~~~L~r~~D~~KDQSYfL~~l~~~~L~~~~FPLG~~~K~eVR~iA~~~gl~~  187 (356)
T PF03054_consen  108 LEYADEGLGADYIATGHYARIEKDEKNGRYRLLRGADPKKDQSYFLSRLPQEQLSRLIFPLGELTKEEVREIAREAGLPV  187 (356)
T ss_dssp             HHHHHTTTT-SEEE---SEEEEEES-TTEEEEEE-SSTTC--GGGGTT--HHHHCCEE-TCCCS-HHHHHHHHHHCT-TT
T ss_pred             HHHHHhhcCCCeeccceeEEEEeeccCCceEEEecCCCCCCceEEEEecCHHHHHhhcCCCCCCCHHHHHHHHHhcCCcc
Confidence            367888 999999999999998763  2   34789999999999999999999999999999999         5554 


Q ss_pred             ---------------------------CcccEEecCCCcEEeeeeCeeeeeeccccccCCC-CCceEEEEEEeCCCCEEE
Q 048403           65 ---------------------------MEGIILEAETGDFLEKHRGFWFYTIGQHQELGLL-YIVYRYVVEKDIENNIVF  116 (300)
Q Consensus        65 ---------------------------~pG~Ivd~e~G~vlG~H~Gl~~YTIGQRkGLgi~-g~~p~YVv~kD~~~N~V~  116 (300)
                                                 +||+|+|.+||++||+|+|+|+|||||||||+|+ ..+||||++||+++|+||
T Consensus       188 a~k~eSq~iCFi~~~~~~~fl~~~~~~~~G~ivd~~tG~vlG~H~G~~~yTiGQRkGlgi~g~~~p~yV~~id~~~N~V~  267 (356)
T PF03054_consen  188 AEKKESQGICFIGDGDYREFLKRYLPEKPGPIVDIDTGKVLGEHKGIHFYTIGQRKGLGIAGYGEPLYVVEIDPETNTVV  267 (356)
T ss_dssp             TT-----SSTTTCCCHHHHHHCTTS----EEEEETT-S-EEEEES-CCC--TT-BTTTTTT-TSS-EEEEEEECCCTEEE
T ss_pred             cCccccceEEEecCCcHHHhhhhccccccCcccccccceeeeeccCeeeEccCCCCCCCCCCCCCeEEEEEEecCCCEEE
Confidence                                       8999999877999999999999999999999999 469999999999999999


Q ss_pred             EecCCCcccceeeEEEEcceeecCCCCCCc-c----cccc--cceeeeEEEEEeeccCCCCEEEEEeCCCccccCCCcEE
Q 048403          117 VSRNYYSFDKKRHLFHAGSLKLLSGLPPEK-I----SQLH--SVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA  189 (300)
Q Consensus       117 V~~~~~~~~L~~~~~~v~~~~Wi~~~p~~~-~----~~~r--~~~~~c~v~~~~~~~~~~~~~~V~f~eP~raVAPGQ~a  189 (300)
                      |+++++++.|+++.+.++++||+.+..+.. .    .++|  +.+++|+++..     +++.+.|+|++|++||||||+|
T Consensus       268 Vg~g~~~~~L~~~~~~~~~~~w~~~~~~~~~~~~~~vkiR~~~~~~~~~v~~~-----~~~~~~V~f~eP~~avaPGQ~a  342 (356)
T PF03054_consen  268 VGPGYDHEDLFSREFTVEDFNWISPELPDGNPLECQVKIRYRQKPVPCTVEPI-----GDGRLRVEFDEPQRAVAPGQSA  342 (356)
T ss_dssp             EEESTT-GGGEEEEEEEECEEETT-S--SSCEEEEEEESSTTS--EEEEEEE------SSS-EEEEEEEEEET--TTSEE
T ss_pred             EeCCcChHHHccCEEEEEeeeeccccCcccCceEEEEEEccCCCCCCEEEEEe-----cCCeEEEEeCCCCCCCCCCcEE
Confidence            999988999999999999999998644331 1    2333  77899999876     4678999999999999999999


Q ss_pred             EEEeCCEEEEeEEE
Q 048403          190 AFYQGRRCLGSGVI  203 (300)
Q Consensus       190 VfY~gd~cLGGG~I  203 (300)
                      |||++|+|||||+|
T Consensus       343 VfY~~d~vLGgG~I  356 (356)
T PF03054_consen  343 VFYDGDRVLGGGII  356 (356)
T ss_dssp             EEEETTEEEEEEEE
T ss_pred             EEEECCEEEEEEEC
Confidence            99999999999998

; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional Back     alignment and domain information
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional Back     alignment and domain information
>KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd01998 tRNA_Me_trans tRNA methyl transferase Back     alignment and domain information
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase Back     alignment and domain information
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed Back     alignment and domain information
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00074 guaA GMP synthase; Reviewed Back     alignment and domain information
>PRK00509 argininosuccinate synthase; Provisional Back     alignment and domain information
>PRK08384 thiamine biosynthesis protein ThiI; Provisional Back     alignment and domain information
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase Back     alignment and domain information
>PRK13820 argininosuccinate synthase; Provisional Back     alignment and domain information
>PLN00200 argininosuccinate synthase; Provisional Back     alignment and domain information
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional Back     alignment and domain information
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR00552 nadE NAD+ synthetase Back     alignment and domain information
>cd04094 selB_III This family represents the domain of elongation factor SelB, homologous to domain III of EF-Tu Back     alignment and domain information
>PLN02347 GMP synthetase Back     alignment and domain information
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma Back     alignment and domain information
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional Back     alignment and domain information
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain Back     alignment and domain information
>cd03706 mtEFTU_III Domain III of mitochondrial EF-TU (mtEF-TU) Back     alignment and domain information
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated Back     alignment and domain information
>cd03707 EFTU_III Domain III of elongation factor (EF) Tu Back     alignment and domain information
>TIGR00485 EF-Tu translation elongation factor TU Back     alignment and domain information
>PLN03126 Elongation factor Tu; Provisional Back     alignment and domain information
>TIGR00475 selB selenocysteine-specific elongation factor SelB Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query300
2hma_A376 The Crystal Structure Of Trna (5-Methylaminomethyl- 1e-08
2der_A380 Cocrystal Structure Of An Rna Sulfuration Enzyme Mn 5e-08
>pdb|2HMA|A Chain A, The Crystal Structure Of Trna (5-Methylaminomethyl-2-Thiouridylate)- Methyltransferase Trmu From Streptococcus Pneumoniae Length = 376 Back     alignment and structure 
Iteration: 1

 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 105/258 (40%), Gaps = 53/258 (20%)
Query: 1   MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
           +D   ++  DYVA+GHYA V           +   + KDQTYFLS LSQ QL++  F L 
Sbjct: 116 LDYAITLGADYVATGHYARVARDEDGTVHXLRGVDNGKDQTYFLSQLSQEQLQKTXFPLG 175
Query: 56  -VLYPRLTIPME-------------GI--ILEAETGDFLE-------------------K 80
            +  P +    E             GI  I E    +FL                    +
Sbjct: 176 HLEKPEVRRLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLPAQPGRXXTVDGRDXGE 235
Query: 81  HRGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
           H G  +YTIGQ   LG+           +VV KD+  NI++V + +Y          A  
Sbjct: 236 HAGLXYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLXSTSLEASQ 295
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
           +      P E   +  + F     +  +T+ H +  GE   V+  +E  + +  GQ   F
Sbjct: 296 VHFTREXPEEFTLECTAKFRYRQPDSKVTV-HVK--GEKTEVI-FAEPQRAITPGQAVVF 351
Query: 192 YQGRRCLGSGVILEAWDD 209
           Y G  CLG G+I  A+ D
Sbjct: 352 YDGEECLGGGLIDNAYRD 369
>pdb|2DER|A Chain A, Cocrystal Structure Of An Rna Sulfuration Enzyme Mnma And Trna-Glu In The Initial Trna Binding State Length = 380 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query300
2der_A380 TRNA-specific 2-thiouridylase MNMA; protein-RNA co 1e-34
2hma_A376 Probable tRNA (5-methylaminomethyl-2-thiouridylat 1e-33
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A* Length = 380 Back     alignment and structure
 Score =  128 bits (324), Expect = 1e-34
 Identities = 61/253 (24%), Positives = 94/253 (37%), Gaps = 53/253 (20%)

Query: 3   AISSMEFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIF------ 53
           A   +  DY+A+GHY             +   S KDQ+YFL  LS  Q+ + +F      
Sbjct: 127 AAEDLGADYIATGHYVRRADVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELE 186

Query: 54  -----------HLVLY--------------------PRLTIPMEGIILEAETGDFLEKHR 82
                       LV                       R      G I+  + GD + +H+
Sbjct: 187 KPQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVD-GDEIGEHQ 245

Query: 83  GFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLK 137
           G  ++T+GQ + LG+           YVV+KD+ENNI+ V++ +           A  L 
Sbjct: 246 GLMYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQQLH 305

Query: 138 LLSGLPPEKISQLHSVF-YNCSL---TIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQ 193
            +   P     +      Y  +    T++  +D       V   E    +  GQ A FY 
Sbjct: 306 WVDREPFTGTMRCTVKTRYRQTDIPCTVKALDDDR---IEVIFDEPVAAVTPGQSAVFYN 362

Query: 194 GRRCLGSGVILEA 206
           G  CLG G+I + 
Sbjct: 363 GEVCLGGGIIEQR 375
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae} Length = 376 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query300
2der_A380 TRNA-specific 2-thiouridylase MNMA; protein-RNA co 100.0
2hma_A376 Probable tRNA (5-methylaminomethyl-2-thiouridylat 100.0
1vbk_A307 Hypothetical protein PH1313; structural genomics, 97.8
1kor_A400 Argininosuccinate synthetase; ligase, riken struct 97.37
1gpm_A525 GMP synthetase, XMP aminase; class I glutamine ami 95.21
1vl2_A421 Argininosuccinate synthase; TM1780, structural gen 94.3
3uow_A556 GMP synthetase; structural genomics consortium, SG 94.05
3tqi_A527 GMP synthase [glutamine-hydrolyzing]; ligase; 2.84 92.64
2ywb_A503 GMP synthase [glutamine-hydrolyzing]; GMP syntheta 91.61
3p52_A249 NH(3)-dependent NAD(+) synthetase; structural geno 91.39
2dpl_A308 GMP synthetase, GMP synthase [glutamine-hydrolyzin 90.68
1wxi_A275 NH(3)-dependent NAD(+) synthetase; NADE, E.coli, l 90.23
1k92_A455 Argininosuccinate synthase, argininosuccinate SY; 89.7
3fiu_A249 NH(3)-dependent NAD(+) synthetase; rossman fold, a 88.58
1kqp_A271 NAD+ synthase, NH(3)-dependent NAD(+) synthetase, 87.42
3bl5_A219 Queuosine biosynthesis protein QUEC; PREQ1 biosynt 86.06
2vxo_A697 GMP synthase [glutamine-hydrolyzing]; proto-oncoge 85.63
1f60_A458 Elongation factor EEF1A; protein-protein complex, 83.49
1d2e_A397 Elongation factor TU (EF-TU); G-protein, beta-barr 80.07
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A* Back     alignment and structure
Probab=100.00  E-value=1.4e-52  Score=405.41  Aligned_cols=200  Identities=29%  Similarity=0.415  Sum_probs=172.4

Q ss_pred             hhhHh-CCCcEEecCcceEEeecCC---CCCCCCCCCCcceEecccCHHHHhhhcccCCCCcc---------CCCC----
Q 048403            2 DAISS-MEFDYVASGHYANVVHSSA---DHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPR---------LTIP----   64 (300)
Q Consensus         2 e~a~~-lGad~VATGHYAri~~~~~---~~~~~D~~KDQSYFLs~L~q~qL~rllFPLG~l~K---------~gLp----   64 (300)
                      +.|.+ +|||+||||||++......   ..++.|..|||||||+.+++++|.+++|||++++|         .||+    
T Consensus       125 ~~A~~~~Gad~IatGH~a~d~~~~~~~~l~rg~~~~kdqsy~L~~l~~~~l~~~i~PL~~~~K~eVr~~A~~~Gl~~~~k  204 (380)
T 2der_A          125 EFAAEDLGADYIATGHYVRRADVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKK  204 (380)
T ss_dssp             HHHHHTTCCSEEECCCSCEEEEETTEEEEECCSSTTTCCGGGGSSCCHHHHHHEECCGGGSCHHHHHHHHHHTTCC----
T ss_pred             HHHHhhcCCCEEEEccccccccccchHHHhcccccccccceeecCCChhhcceeEccCCCCCHHHHHHHHHHcCCCCccC
Confidence            45677 9999999999999753221   23788999999999999999999999999999999         4553    


Q ss_pred             ------------------------CcccEEecCCCcEEeeeeCeeeeeeccccccCCCC-----CceEEEEEEeCCCCEE
Q 048403           65 ------------------------MEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLY-----IVYRYVVEKDIENNIV  115 (300)
Q Consensus        65 ------------------------~pG~Ivd~e~G~vlG~H~Gl~~YTIGQRkGLgi~g-----~~p~YVv~kD~~~N~V  115 (300)
                                              .||.|+| .+|+++|+|.|+|+|||||||||+|++     .+||||++||+++|+|
T Consensus       205 p~s~~~cf~~~~~~~~fL~~~~~~~pG~~vd-~~g~~lg~H~g~~~yTiGQr~gl~i~~~~~~~~~p~~V~~~d~~~n~v  283 (380)
T 2der_A          205 KDSTGICFIGERKFREFLGRYLPAQPGKIIT-VDGDEIGEHQGLMYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNIL  283 (380)
T ss_dssp             ------------CHHHHHHTTSCCCCCEEEE-TTCCEEEECSCSTTCCTTCCTTSCCCCCSSSTTCCEEEEEEETTTTEE
T ss_pred             CCCCCccccCchHHHHHHHHhhhhCCCCEEe-eCCcEEEEecCceeeeecccccCCcCcccCCCCccEEEEEEecCCCEE
Confidence                                    5899999 489999999999999999999999986     4799999999999999


Q ss_pred             EEecCCCcccceeeEEEEcceeecCCCCCCcc----cccc--cceeeeEEEEEeeccCCCCEEEEEeCCCccccCCCcEE
Q 048403          116 FVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI----SQLH--SVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA  189 (300)
Q Consensus       116 ~V~~~~~~~~L~~~~~~v~~~~Wi~~~p~~~~----~~~r--~~~~~c~v~~~~~~~~~~~~~~V~f~eP~raVAPGQ~a  189 (300)
                      +|+++++++.|+++.+.+.++||+...++...    .++|  +.+++|+++..     +++.+.|+|++|++||||||+|
T Consensus       284 ~v~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~k~r~~~~~~~~~~~~~-----~~~~~~v~~~~p~~~v~pGQ~~  358 (380)
T 2der_A          284 VVAQGHEHPRLMSVGLIAQQLHWVDREPFTGTMRCTVKTRYRQTDIPCTVKAL-----DDDRIEVIFDEPVAAVTPGQSA  358 (380)
T ss_dssp             EEEESTTCTTTCEEEEEEEEEEETTCCCCCSEEEEEEESSTTCCCEEEEEECC-----SSSCEEEEEEEEESCCCTTSEE
T ss_pred             EEECCCChHHhccCEEEEeccEECCCCCCCCceEEEEEEccCCCCccEEEEEe-----cCCEEEEEECCCCcCcCCCceE
Confidence            99998888899999999999999975443321    2333  67789998643     3557999999999999999999


Q ss_pred             EEEeCCEEEEeEEEeeee
Q 048403          190 AFYQGRRCLGSGVILEAW  207 (300)
Q Consensus       190 VfY~gd~cLGGG~I~~~~  207 (300)
                      |||++|+|||||+|.+..
T Consensus       359 v~Y~~~~~lggg~i~~~~  376 (380)
T 2der_A          359 VFYNGEVCLGGGIIEQRL  376 (380)
T ss_dssp             EEEETTEEEEEEEEEEEE
T ss_pred             EEEeCCEEEEEEEEeccc
Confidence            999999999999998765
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae} Back     alignment and structure
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1 Back     alignment and structure
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A* Back     alignment and structure
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1 Back     alignment and structure
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1 Back     alignment and structure
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum} Back     alignment and structure
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii} Back     alignment and structure
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A* Back     alignment and structure
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0 Back     alignment and structure
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A Back     alignment and structure
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A* Back     alignment and structure
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A* Back     alignment and structure
>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp} Back     alignment and structure
>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase, amidotransferase, ATP pyrophosphatase, NAD-adenylate; HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB: 1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A 2pza_A* 2pz8_A Back     alignment and structure
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis} Back     alignment and structure
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens} Back     alignment and structure
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A Back     alignment and structure
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query300
d2c5sa1218 Thiamine biosynthesis protein ThiI, C-terminal dom 87.33
d1xnga1255 NH3-dependent NAD+-synthetase {Helicobacter pylori 83.55
>d2c5sa1 c.26.2.6 (A:174-391) Thiamine biosynthesis protein ThiI, C-terminal domain {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: ThiI-like
domain: Thiamine biosynthesis protein ThiI, C-terminal domain
species: Bacillus anthracis [TaxId: 1392]

Probab=87.33  E-value=0.047  Score=44.29  Aligned_cols=48  Identities=6%  Similarity=0.014  Sum_probs=30.2

Q ss_pred             hhhHhCCCcEEecCcceEEeecCCCCCCCCCCCCcceEecccCHHHHhhhcccCCCCcc
Q 048403            2 DAISSMEFDYVASGHYANVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPR   60 (300)
Q Consensus         2 e~a~~lGad~VATGHYAri~~~~~~~~~~D~~KDQSYFLs~L~q~qL~rllFPLG~l~K   60 (300)
                      +.|+++|++.|||||.+.-           ........|+.++...--+++.||.+++|
T Consensus       101 ~~a~~~~~~~i~~G~~~~d-----------~~~~~~~~l~~~~~~~~~~iirPll~~~K  148 (218)
T d2c5sa1         101 RIAEERNALAITTGESLGQ-----------VASQTLDSMHTINEVTNYPVIRPLITMDK  148 (218)
T ss_dssp             HHHHHTTCCEEECCCCSSS-----------TTSCCHHHHHHHGGGCCSCEECTTTTCCH
T ss_pred             HHHHHhccceEEeeeecCc-----------chhhhHHHHhccchhchhhHHHhhhcCCH
Confidence            4578899999999997531           11111111333334444557899999999
>d1xnga1 c.26.2.1 (A:3-257) NH3-dependent NAD+-synthetase {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure