Citrus Sinensis ID: 048438

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
Protein Sequence
AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTEERH
Secondary Structure (PSIPRED)
ccccEEEEEEEccccccccccccHHHHHHHHHcccEEEEEHHHHHHHcccccccHHHcccccccEEEEccccccccccccEEEEEEcHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEccccEEEEEEEEEcccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccEEEEEEEEccEEEEEEEcccccHHccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEEcccccccccccHHHHHHHHHHccEEEEEEEHHcccccccHHHHHHHccccEccccccccccEEEEEccccEEEEccHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcEEEEEEEEEEcccccccccccHHHHHccccccccccHHHHHHHHHHHccccEEEEEEEEccEEEEEEEEEcccccccc
Coil and Loop (DISEMBL)
AGLIPLFlcatigttaitavdplkplcdvakQFGIWVHVDAayagsacifpefrhfidgvegadsfslnAHKWFFATLDCcclwatnpeylknkateskpvvdykdwqiTLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSgdkrfevvfpcHFAVvcfrvsplpvlmDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFatgatlteerh
Flexible Loop (DISEMBL)
AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWATNPEYLknkateskpvvdykdwqITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFatgatlteerh
Low Complexity Region (SEG)
AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTEERH
Disordered region (IsUnstruct)
**LIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGAT******
Disordered Region (DISOPRED)
AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATG*TL*****
Disordered Region (DISEMBL)
AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTEERH
Disordered Region (DISPRO)
*GLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTK*******E*EQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATL*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCFRVSPLPVLMDKLxxxxxxxxxxxxxxxxxxxxxLLESINASGKAYMTNVVLGGIYAIRFATGATLTEERH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	239	2.2.26 [Sep-21-2011]
P54771	523	Tyrosine/DOPA decarboxyla	N/A	no	0.987	0.451	0.674	3e-98
P54768	518	Tyrosine/DOPA decarboxyla	N/A	no	0.979	0.451	0.66	5e-94
P54769	531	Tyrosine/DOPA decarboxyla	N/A	no	1.0	0.450	0.616	2e-89
P54770	533	Tyrosine/DOPA decarboxyla	N/A	no	1.0	0.448	0.6	1e-87
Q06086	514	Tyrosine decarboxylase 2	N/A	no	0.949	0.441	0.594	5e-80
Q06088	508	Tyrosine decarboxylase 4	N/A	no	0.949	0.446	0.594	9e-80
Q06087	516	Tyrosine decarboxylase 3	N/A	no	0.949	0.439	0.594	2e-79
Q9M0G4	545	Probable tyrosine decarbo	yes	no	0.933	0.409	0.530	2e-74
Q8RY79	490	Tyrosine decarboxylase 1	no	no	0.937	0.457	0.536	7e-74
Q7XHL3	497	Tyrosine decarboxylase 1	yes	no	0.937	0.450	0.5	7e-71

>sp|P54771|TYDC5_PAPSO Tyrosine/DOPA decarboxylase 5 OS=Papaver somniferum GN=TYDC5 PE=2 SV=1

 Score =  358 bits (918), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 170/252 (67%), Positives = 199/252 (78%), Gaps = 16/252 (6%)

Query: 1   AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGV 60
           +GL+PLFLCAT+GTT+ TAVDP+ PLC+VAKQFGIWVHVDAAYAGSACI PEFRHFIDGV
Sbjct: 250 SGLVPLFLCATVGTTSSTAVDPIGPLCEVAKQFGIWVHVDAAYAGSACICPEFRHFIDGV 309

Query: 61  EGADSFSLNAHKWFFATLDCCCLW-----------ATNPEYLKNKATESKPVVDYKDWQI 109
           E ADSFSLNAHKWFF TLDCCCLW           +T+PEYLKNKAT+SK V+DYKDWQI
Sbjct: 310 EEADSFSLNAHKWFFTTLDCCCLWVKDSNALVKALSTSPEYLKNKATDSKQVIDYKDWQI 369

Query: 110 TLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCF 169
            LSR FRS+KLW V+R+YG+ NLR FLRSHV MA+ F+ L++ DKRFE+V P  FA+VCF
Sbjct: 370 ALSRRFRSMKLWLVLRSYGVANLRSFLRSHVKMAKHFDGLIAMDKRFEIVVPNTFAMVCF 429

Query: 170 RVSPLPVLMDKLKTKY--ENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIR 227
           R+ P  +   KL       NC+   EE+ NE N +LLES+NASG  YMT+ V+GG+Y IR
Sbjct: 430 RLKPAAIFNGKLGENGVDYNCI---EEKTNEINSKLLESVNASGSIYMTHAVVGGVYMIR 486

Query: 228 FATGATLTEERH 239
           FA GATLTEERH
Sbjct: 487 FAVGATLTEERH 498

May play an important role in providing precursors for alkaloid synthesis in the roots and germinating seedlings.
Papaver somniferum (taxid: 3469)
EC: 4EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 5

>sp|P54768|TYDC1_PAPSO Tyrosine/DOPA decarboxylase 1 OS=Papaver somniferum GN=TYDC1 PE=2 SV=1

 Score =  343 bits (880), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 165/250 (66%), Positives = 194/250 (77%), Gaps = 16/250 (6%)

Query: 1   AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGV 60
           +GL+PLFLCAT+GTT+ TAVDP+ PLC VAK  GIWVH+DAAYAGSACI PEFRHFIDGV
Sbjct: 250 SGLVPLFLCATVGTTSSTAVDPIGPLCAVAKLHGIWVHIDAAYAGSACICPEFRHFIDGV 309

Query: 61  EGADSFSLNAHKWFFATLDCCCLW-----------ATNPEYLKNKATESKPVVDYKDWQI 109
           E ADSFSLNAHKWFF TLDCCCLW           +T+PEYLKNKAT+SK V+DYKDWQI
Sbjct: 310 EDADSFSLNAHKWFFTTLDCCCLWVKDSDSLVKALSTSPEYLKNKATDSKQVIDYKDWQI 369

Query: 110 TLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCF 169
            LSR FRS+KLW V+R+YG+ NLR FLRSHV MA+ F+ L+  D RFE+V P  FA+VCF
Sbjct: 370 ALSRRFRSMKLWLVLRSYGIANLRTFLRSHVKMAKHFQGLIGMDNRFEIVVPRTFAMVCF 429

Query: 170 RVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFA 229
           R+ P  +   K+    E+  +  E Q NE N +LLES+NASGK YMT+ V+GG+Y IRFA
Sbjct: 430 RLKPAAIFRKKI---VEDDHI--EAQTNEVNAKLLESVNASGKIYMTHAVVGGVYMIRFA 484

Query: 230 TGATLTEERH 239
            GATLTEERH
Sbjct: 485 VGATLTEERH 494

Marginally higher substrate specificity for L-DOPA over L-tyrosine.

Papaver somniferum (taxid: 3469)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|P54769|TYDC2_PAPSO Tyrosine/DOPA decarboxylase 2 OS=Papaver somniferum GN=TYDC2 PE=2 SV=1

 Score =  328 bits (842), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 159/258 (61%), Positives = 193/258 (74%), Gaps = 19/258 (7%)

Query: 1   AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGV 60
           AGLIPLF+C T+GTT+ TAVDP+ P+C+VAK++ +WVHVDAAYAGSACI PEFRHFIDGV
Sbjct: 248 AGLIPLFVCPTVGTTSSTAVDPISPICEVAKEYEMWVHVDAAYAGSACICPEFRHFIDGV 307

Query: 61  EGADSFSLNAHKWFFATLDCCCLW-----------ATNPEYLKNKATESKPVVDYKDWQI 109
           E ADSFSLNAHKWFF TLDCCCLW           +TNPEYL+NKATES+ VVDYKDWQI
Sbjct: 308 EEADSFSLNAHKWFFTTLDCCCLWVKDPSALVKALSTNPEYLRNKATESRQVVDYKDWQI 367

Query: 110 TLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCF 169
            LSR FRSLKLW V+R+YG+ NLR+FLRSHV MA+ FE L+  D RFE+  P  FA+VCF
Sbjct: 368 ALSRRFRSLKLWMVLRSYGVTNLRNFLRSHVKMAKTFEGLICMDGRFEITVPRTFAMVCF 427

Query: 170 RVSPLPVLMDKLKTKYENC-----LLSEEEQI---NEFNRELLESINASGKAYMTNVVLG 221
           R+ P   +       ++N      L  E E +   N+ N+  LE++NA+G  YMT+ V+G
Sbjct: 428 RLLPPKTIKVYDNGVHQNGNGVVPLRDENENLVLANKLNQVYLETVNATGSVYMTHAVVG 487

Query: 222 GIYAIRFATGATLTEERH 239
           G+Y IRFA G+TLTEERH
Sbjct: 488 GVYMIRFAVGSTLTEERH 505

Marginally higher substrate specificity for L-DOPA over L-tyrosine.

Papaver somniferum (taxid: 3469)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|P54770|TYDC3_PAPSO Tyrosine/DOPA decarboxylase 3 OS=Papaver somniferum GN=TYDC3 PE=2 SV=2

 Score =  322 bits (826), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 156/260 (60%), Positives = 193/260 (74%), Gaps = 21/260 (8%)

Query: 1   AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGV 60
           AGLIPLF+C T+GTT+ TAVDP+ P+C+VAK++ +WVH+DAAYAGSACI PEFRHFIDGV
Sbjct: 248 AGLIPLFVCPTVGTTSSTAVDPIGPICEVAKEYEMWVHIDAAYAGSACICPEFRHFIDGV 307

Query: 61  EGADSFSLNAHKWFFATLDCCCLW-----------ATNPEYLKNKATESKPVVDYKDWQI 109
           E ADSFSLNAHKWFF TLDCCCLW           +TNPEYL+NKATES+ VVDYKDWQI
Sbjct: 308 EEADSFSLNAHKWFFTTLDCCCLWVKDPSSLVKALSTNPEYLRNKATESRQVVDYKDWQI 367

Query: 110 TLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCF 169
            L R FRS+KLW V+R+YG+ NLR+FLRSHV MA+ FE LV  D+RFE+  P  FA+VCF
Sbjct: 368 ALIRRFRSMKLWMVLRSYGVTNLRNFLRSHVRMAKTFEGLVGADRRFEITVPRTFAMVCF 427

Query: 170 R-VSPLPVLMDKLKTKYEN------CLLSEEEQI---NEFNRELLESINASGKAYMTNVV 219
           R + P  V +      ++N       L +E E++   N+ N+  L  + A+G  YMT+ V
Sbjct: 428 RLLPPTTVKVCGENGVHQNGNGVIAVLRNENEELVLANKLNQVYLRQVKATGSVYMTHAV 487

Query: 220 LGGIYAIRFATGATLTEERH 239
           +GG+Y IRFA G+TLTEERH
Sbjct: 488 VGGVYMIRFAVGSTLTEERH 507

Marginally higher substrate specificity for L-DOPA over L-tyrosine.

Papaver somniferum (taxid: 3469)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|Q06086|TYDC2_PETCR Tyrosine decarboxylase 2 OS=Petroselinum crispum GN=TYRDC-2 PE=2 SV=1

 Score =  297 bits (760), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 148/249 (59%), Positives = 184/249 (73%), Gaps = 22/249 (8%)

Query: 2   GLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVE 61
           GLIPL+LCAT+GTT+ T VDPL  L +VAK++ +WVHVDAAYAGSACI PEFR ++DGVE
Sbjct: 247 GLIPLYLCATVGTTSSTTVDPLPALTEVAKKYDLWVHVDAAYAGSACICPEFRQYLDGVE 306

Query: 62  GADSFSLNAHKWFFATLDCCCLWATN-----------PEYLKNKATESKPVVDYKDWQIT 110
            ADSFSLNAHKWF  TLDCCCLW  N           PE+LKN A+E+  VVDYKDWQI 
Sbjct: 307 NADSFSLNAHKWFLTTLDCCCLWVRNPSALIKSLSTYPEFLKNNASETNKVVDYKDWQIM 366

Query: 111 LSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCFR 170
           LSR FR+LKLWFV+R+YG+  LR F+R HV MA+ FE LV+ DKRFEVV P  F++VCFR
Sbjct: 367 LSRRFRALKLWFVLRSYGVGQLREFIRGHVGMAKYFEGLVNMDKRFEVVAPRLFSMVCFR 426

Query: 171 VSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFAT 230
           + P  ++             ++E+++NE NR+LLES+N SG+ Y+++ VLGGIY IRFA 
Sbjct: 427 IKPSAMIGK-----------NDEDEVNEINRKLLESVNDSGRIYVSHTVLGGIYVIRFAI 475

Query: 231 GATLTEERH 239
           G TLT+  H
Sbjct: 476 GGTLTDINH 484

Petroselinum crispum (taxid: 4043)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|Q06088|TYDC4_PETCR Tyrosine decarboxylase 4 OS=Petroselinum crispum GN=TYRDC-4 PE=2 SV=1

 Score =  296 bits (758), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 148/249 (59%), Positives = 184/249 (73%), Gaps = 22/249 (8%)

Query: 2   GLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVE 61
           GLIPL+LCAT+GTT+ T VDPL  L +VAK++ +WVHVDAAYAGSACI PEFR ++DGVE
Sbjct: 248 GLIPLYLCATVGTTSSTTVDPLPALTEVAKKYDLWVHVDAAYAGSACICPEFRQYLDGVE 307

Query: 62  GADSFSLNAHKWFFATLDCCCLW-----------ATNPEYLKNKATESKPVVDYKDWQIT 110
            ADSFSLNAHKWF  TLDCCCLW           +T PE+LKN A+E+  VVDYKDWQI 
Sbjct: 308 NADSFSLNAHKWFLTTLDCCCLWVRDPSALIKSLSTYPEFLKNNASETNKVVDYKDWQIM 367

Query: 111 LSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCFR 170
           LSR FR+LKLWFV+R+YG+  LR F+R HV MA+ FE LV  DKRFEVV P  F++VCFR
Sbjct: 368 LSRRFRALKLWFVLRSYGVGQLREFIRGHVGMAKYFEGLVGLDKRFEVVAPRLFSMVCFR 427

Query: 171 VSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFAT 230
           + P  ++             ++E+++NE NR+LLES+N SG+ Y+++ VLGGIY IRFA 
Sbjct: 428 IKPSAMIGK-----------NDEDEVNEINRKLLESVNDSGRIYVSHTVLGGIYVIRFAI 476

Query: 231 GATLTEERH 239
           G TLT+  H
Sbjct: 477 GGTLTDINH 485

Petroselinum crispum (taxid: 4043)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|Q06087|TYDC3_PETCR Tyrosine decarboxylase 3 OS=Petroselinum crispum GN=TYRDC-3 PE=2 SV=1

 Score =  295 bits (755), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 148/249 (59%), Positives = 183/249 (73%), Gaps = 22/249 (8%)

Query: 2   GLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVE 61
           GLIPL+LCAT+GTT+ T VDPL  L +VAK++ +WVHVDAAYAGSACI PEFR ++DGVE
Sbjct: 249 GLIPLYLCATVGTTSSTTVDPLPALTEVAKKYDLWVHVDAAYAGSACICPEFRQYLDGVE 308

Query: 62  GADSFSLNAHKWFFATLDCCCLW-----------ATNPEYLKNKATESKPVVDYKDWQIT 110
            ADSFSLNAHKWF  TLDCCCLW           +T PE+LKN A+E+  VVDYKDWQI 
Sbjct: 309 NADSFSLNAHKWFLTTLDCCCLWVRDPSALIKSLSTYPEFLKNNASETNKVVDYKDWQIM 368

Query: 111 LSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCFR 170
           LSR FR+LKLWFV+R+YG+  LR F+R HV MA+ FE LV  DKRFEVV P  F++VCFR
Sbjct: 369 LSRRFRALKLWFVLRSYGVGQLREFIRGHVGMAKYFEGLVGLDKRFEVVAPRLFSMVCFR 428

Query: 171 VSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFAT 230
           + P  ++             ++E ++NE NR+LLES+N SG+ Y+++ VLGGIY IRFA 
Sbjct: 429 IKPSAMIGK-----------NDENEVNEINRKLLESVNDSGRIYVSHTVLGGIYVIRFAI 477

Query: 231 GATLTEERH 239
           G TLT+  H
Sbjct: 478 GGTLTDINH 486

Petroselinum crispum (taxid: 4043)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|Q9M0G4|TYDC2_ARATH Probable tyrosine decarboxylase 2 OS=Arabidopsis thaliana GN=At4g28680 PE=2 SV=1

 Score =  278 bits (711), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 132/249 (53%), Positives = 175/249 (70%), Gaps = 26/249 (10%)

Query: 2   GLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVE 61
           G IP F+CAT+GTT+  AVDPL PL ++AK++GIW+HVDAAYAG+ACI PE+R FIDG+E
Sbjct: 291 GFIPFFICATVGTTSSAAVDPLVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFIDGIE 350

Query: 62  GADSFSLNAHKWFFATLDCCCLWA-----------TNPEYLKNKATESKPVVDYKDWQIT 110
            ADSF++NAHKW FA   C  LW            TNPEYL+ K ++   VV+YKDWQI+
Sbjct: 351 NADSFNMNAHKWLFANQTCSPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVNYKDWQIS 410

Query: 111 LSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCFR 170
           LSR FRSLKLW V+R YG ENLR+F+R HVN+A+ FE  V+ D  FEVV   +F++VCFR
Sbjct: 411 LSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRYFSLVCFR 470

Query: 171 VSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFAT 230
           ++P+                 +E+Q NE NRELL ++N++GK ++++  L G + +RFA 
Sbjct: 471 LAPVD---------------GDEDQCNERNRELLAAVNSTGKIFISHTALSGKFVLRFAV 515

Query: 231 GATLTEERH 239
           GA LTEE+H
Sbjct: 516 GAPLTEEKH 524

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|Q8RY79|TYDC1_ARATH Tyrosine decarboxylase 1 OS=Arabidopsis thaliana GN=ELI5 PE=2 SV=1

 Score =  276 bits (707), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 134/250 (53%), Positives = 170/250 (68%), Gaps = 26/250 (10%)

Query: 1   AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGV 60
           AGLIP FLCA +GTT+ TAVDPL  L  +A   GIW HVDAAYAGSACI PE+R +IDGV
Sbjct: 238 AGLIPFFLCANVGTTSSTAVDPLAALGKIANSNGIWFHVDAAYAGSACICPEYRQYIDGV 297

Query: 61  EGADSFSLNAHKWFFATLDCCCLW-----------ATNPEYLKNKATESKPVVDYKDWQI 109
           E ADSF++NAHKWF    DC  LW           +TNPE+LKNKA+++  VVDYKDWQI
Sbjct: 298 ETADSFNMNAHKWFLTNFDCSLLWVKDQDSLTLALSTNPEFLKNKASQANLVVDYKDWQI 357

Query: 110 TLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCF 169
            L R FRSLKLW V+R YG E L+ ++R+H+ +A+ FE+LVS D  FE+V P  FA+VCF
Sbjct: 358 PLGRRFRSLKLWMVLRLYGSETLKSYIRNHIKLAKEFEQLVSQDPNFEIVTPRIFALVCF 417

Query: 170 RVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFA 229
           R+ P+                 EE++ N  NRELL+++N+SGK +M++  L G   +R A
Sbjct: 418 RLVPVK---------------DEEKKCNNRNRELLDAVNSSGKLFMSHTALSGKIVLRCA 462

Query: 230 TGATLTEERH 239
            GA LTEE+H
Sbjct: 463 IGAPLTEEKH 472

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|Q7XHL3|TYDC1_ORYSJ Tyrosine decarboxylase 1 OS=Oryza sativa subsp. japonica GN=Os07g0437500 PE=2 SV=1

 Score =  266 bits (681), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 125/250 (50%), Positives = 172/250 (68%), Gaps = 26/250 (10%)

Query: 1   AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGV 60
           +GLIP F+CAT+GTT+ +AVDPL  L  +AK   +W H+DAAYAGSACI PE+RH ++GV
Sbjct: 243 SGLIPFFICATVGTTSSSAVDPLPELGQIAKSNDMWFHIDAAYAGSACICPEYRHHLNGV 302

Query: 61  EGADSFSLNAHKWFFATLDCCCLW-----------ATNPEYLKNKATESKPVVDYKDWQI 109
           E ADSF++NAHKWF    DC  LW           +TNPE+LKNKA+++  VVD+KDWQI
Sbjct: 303 EEADSFNMNAHKWFLTNFDCSLLWVKDRSFLIQSLSTNPEFLKNKASQANSVVDFKDWQI 362

Query: 110 TLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCF 169
            L R FRSLKLW V+R YG++NL+ ++R H+++A  FE+L+  D RFEVV P  F++VCF
Sbjct: 363 PLGRRFRSLKLWMVLRLYGVDNLQSYIRKHIHLAEHFEQLLLSDSRFEVVTPRTFSLVCF 422

Query: 170 RVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFA 229
           R+ P P               S+ E   + N ++++ +N+SGK ++++ VL G + +RFA
Sbjct: 423 RLVP-PT--------------SDHENGRKLNYDMMDGVNSSGKIFLSHTVLSGKFVLRFA 467

Query: 230 TGATLTEERH 239
            GA LTEERH
Sbjct: 468 VGAPLTEERH 477

Oryza sativa subsp. japonica (taxid: 39947)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	239
260060489	517	tyrosine decarboxylase [Citrus reshni] g	0.995	0.460	0.899	1e-129
260060487	517	tyrosine decarboxylase [Citrus reshni]	0.995	0.460	0.887	1e-127
1717828	523	RecName: Full=Tyrosine/DOPA decarboxylas	0.987	0.451	0.674	1e-96
3282523	512	tyrosine/dopa decarboxylase [Papaver som	0.979	0.457	0.66	1e-92
1717825	518	RecName: Full=Tyrosine/DOPA decarboxylas	0.979	0.451	0.66	3e-92
3282527	525	tyrosine/dopa decarboxylase [Papaver som	0.979	0.445	0.66	4e-92
12620328	518	tyrosine/dopa decarboxylase [Thalictrum	1.0	0.461	0.652	9e-92
45387431	409	tyrosine decarboxylase [Aristolochia con	0.966	0.564	0.650	5e-91
115607203	516	tyrosine decarboxylase [Aristolochia con	0.966	0.447	0.642	2e-89
217038851	537	tyrosine/DOPA decarboxylase [Argemone me	1.0	0.445	0.613	1e-88

>gi|260060489|gb|ACX29991.1| tyrosine decarboxylase [Citrus reshni] gi|260060491|gb|ACX29992.1| tyrosine decarboxylase [Citrus sinensis] gi|260060497|gb|ACX29995.1| tyrosine decarboxylase [Citrus aurantium] gi|260060499|gb|ACX29996.1| tyrosine decarboxylase [Citrus reticulata]

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 224/249 (89%), Positives = 230/249 (92%), Gaps = 11/249 (4%)

Query: 2   GLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVE 61
           GLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACI PEFRHFIDGVE
Sbjct: 248 GLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVE 307

Query: 62  GADSFSLNAHKWFFATLDCCCLW-----------ATNPEYLKNKATESKPVVDYKDWQIT 110
           GADSFSLNAHKWFFATLDCCCLW           +TNPEYLKNKATES  VVDYKDWQIT
Sbjct: 308 GADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQIT 367

Query: 111 LSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCFR 170
           LSR FRSLKLWFVIRNYG+ NLRHFLRSHVNMA+LFERLVSGDKRFE+VFPCHFAVVCFR
Sbjct: 368 LSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHFAVVCFR 427

Query: 171 VSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFAT 230
           VSP PVLMDKLKTKY NCLLSEEEQINEFNRELLESINASGKAYMT+ VLGGIYAIRFAT
Sbjct: 428 VSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFAT 487

Query: 231 GATLTEERH 239
           GATLTE+RH
Sbjct: 488 GATLTEKRH 496

Source: Citrus reshni

Species: Citrus reshni

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|260060487|gb|ACX29990.1| tyrosine decarboxylase [Citrus reshni]

 Score =  458 bits (1179), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 221/249 (88%), Positives = 228/249 (91%), Gaps = 11/249 (4%)

Query: 2   GLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVE 61
           GLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACI PEFRHFIDGVE
Sbjct: 248 GLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVE 307

Query: 62  GADSFSLNAHKWFFATLDCCCLW-----------ATNPEYLKNKATESKPVVDYKDWQIT 110
           GADSFSLNAHKWFFATLDCCCLW           +TNPEYLKNKATES  VVDYKDWQIT
Sbjct: 308 GADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMHVVDYKDWQIT 367

Query: 111 LSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCFR 170
           LSR  RSLKLWFVIRNYG+ NLRHFLRSHVNMA+LFERLVSGDKRFE+VFPCHFAVVCFR
Sbjct: 368 LSRRSRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHFAVVCFR 427

Query: 171 VSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFAT 230
           VSP PVLMDKLKTKY NCLLSE EQINEFNRELLESINASGKAYMT+ VLGGIYAIRFAT
Sbjct: 428 VSPSPVLMDKLKTKYVNCLLSEGEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFAT 487

Query: 231 GATLTEERH 239
           GATLTE++H
Sbjct: 488 GATLTEKQH 496

Source: Citrus reshni

Species: Citrus reshni

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1717828|sp|P54771.1|TYDC5_PAPSO RecName: Full=Tyrosine/DOPA decarboxylase 5; Includes: RecName: Full=DOPA decarboxylase; Short=DDC; Includes: RecName: Full=Tyrosine decarboxylase gi|1049006|gb|AAA97535.1| tyrosine decarboxylase [Papaver somniferum]

 Score =  358 bits (918), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 170/252 (67%), Positives = 199/252 (78%), Gaps = 16/252 (6%)

Query: 1   AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGV 60
           +GL+PLFLCAT+GTT+ TAVDP+ PLC+VAKQFGIWVHVDAAYAGSACI PEFRHFIDGV
Sbjct: 250 SGLVPLFLCATVGTTSSTAVDPIGPLCEVAKQFGIWVHVDAAYAGSACICPEFRHFIDGV 309

Query: 61  EGADSFSLNAHKWFFATLDCCCLW-----------ATNPEYLKNKATESKPVVDYKDWQI 109
           E ADSFSLNAHKWFF TLDCCCLW           +T+PEYLKNKAT+SK V+DYKDWQI
Sbjct: 310 EEADSFSLNAHKWFFTTLDCCCLWVKDSNALVKALSTSPEYLKNKATDSKQVIDYKDWQI 369

Query: 110 TLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCF 169
            LSR FRS+KLW V+R+YG+ NLR FLRSHV MA+ F+ L++ DKRFE+V P  FA+VCF
Sbjct: 370 ALSRRFRSMKLWLVLRSYGVANLRSFLRSHVKMAKHFDGLIAMDKRFEIVVPNTFAMVCF 429

Query: 170 RVSPLPVLMDKLKTKY--ENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIR 227
           R+ P  +   KL       NC+   EE+ NE N +LLES+NASG  YMT+ V+GG+Y IR
Sbjct: 430 RLKPAAIFNGKLGENGVDYNCI---EEKTNEINSKLLESVNASGSIYMTHAVVGGVYMIR 486

Query: 228 FATGATLTEERH 239
           FA GATLTEERH
Sbjct: 487 FAVGATLTEERH 498

Source: Papaver somniferum

Species: Papaver somniferum

Genus: Papaver

Family: Papaveraceae

Order: Ranunculales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3282523|gb|AAC61842.1| tyrosine/dopa decarboxylase [Papaver somniferum]

 Score =  344 bits (883), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 165/250 (66%), Positives = 195/250 (78%), Gaps = 16/250 (6%)

Query: 1   AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGV 60
           +GL+PLFLCAT+GTT+ TAVDP+ PLC VAK +GIWVH+DAAYAGSACI PEFRHFIDGV
Sbjct: 250 SGLVPLFLCATVGTTSSTAVDPIGPLCAVAKLYGIWVHIDAAYAGSACICPEFRHFIDGV 309

Query: 61  EGADSFSLNAHKWFFATLDCCCLW-----------ATNPEYLKNKATESKPVVDYKDWQI 109
           E ADSFSLNAHKWFF TLDCCCLW           +T+ EYLKNKATESK V+DYKDWQI
Sbjct: 310 EDADSFSLNAHKWFFTTLDCCCLWVKDSDSLVKALSTSAEYLKNKATESKQVIDYKDWQI 369

Query: 110 TLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCF 169
            LSR FRS+KLW V+R+YG+ NLR FLRSHV MA+ F+ L+  D RFE+V P  FA+VCF
Sbjct: 370 ALSRRFRSMKLWLVLRSYGVANLRTFLRSHVKMAKHFQGLMGMDNRFEIVVPRTFAMVCF 429

Query: 170 RVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFA 229
           R+ P  +   K+    +N  +  E+Q NE N +LLES+NASGK YMT+ V+GG+Y IRFA
Sbjct: 430 RLKPAAIFKQKI---VDNDYI--EDQTNEVNAKLLESVNASGKIYMTHAVVGGVYMIRFA 484

Query: 230 TGATLTEERH 239
            GATLTEERH
Sbjct: 485 VGATLTEERH 494

Source: Papaver somniferum

Species: Papaver somniferum

Genus: Papaver

Family: Papaveraceae

Order: Ranunculales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1717825|sp|P54768.1|TYDC1_PAPSO RecName: Full=Tyrosine/DOPA decarboxylase 1; Includes: RecName: Full=DOPA decarboxylase; Short=DDC; Includes: RecName: Full=Tyrosine decarboxylase gi|607745|gb|AAA62346.1| tyrosine/dopa decarboxylase [Papaver somniferum]

 Score =  343 bits (880), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 165/250 (66%), Positives = 194/250 (77%), Gaps = 16/250 (6%)

Query: 1   AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGV 60
           +GL+PLFLCAT+GTT+ TAVDP+ PLC VAK  GIWVH+DAAYAGSACI PEFRHFIDGV
Sbjct: 250 SGLVPLFLCATVGTTSSTAVDPIGPLCAVAKLHGIWVHIDAAYAGSACICPEFRHFIDGV 309

Query: 61  EGADSFSLNAHKWFFATLDCCCLW-----------ATNPEYLKNKATESKPVVDYKDWQI 109
           E ADSFSLNAHKWFF TLDCCCLW           +T+PEYLKNKAT+SK V+DYKDWQI
Sbjct: 310 EDADSFSLNAHKWFFTTLDCCCLWVKDSDSLVKALSTSPEYLKNKATDSKQVIDYKDWQI 369

Query: 110 TLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCF 169
            LSR FRS+KLW V+R+YG+ NLR FLRSHV MA+ F+ L+  D RFE+V P  FA+VCF
Sbjct: 370 ALSRRFRSMKLWLVLRSYGIANLRTFLRSHVKMAKHFQGLIGMDNRFEIVVPRTFAMVCF 429

Query: 170 RVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFA 229
           R+ P  +   K+    E+  +  E Q NE N +LLES+NASGK YMT+ V+GG+Y IRFA
Sbjct: 430 RLKPAAIFRKKI---VEDDHI--EAQTNEVNAKLLESVNASGKIYMTHAVVGGVYMIRFA 484

Query: 230 TGATLTEERH 239
            GATLTEERH
Sbjct: 485 VGATLTEERH 494

Source: Papaver somniferum

Species: Papaver somniferum

Genus: Papaver

Family: Papaveraceae

Order: Ranunculales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3282527|gb|AAC61844.1| tyrosine/dopa decarboxylase [Papaver somniferum]

 Score =  343 bits (880), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 165/250 (66%), Positives = 194/250 (77%), Gaps = 16/250 (6%)

Query: 1   AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGV 60
           +GL+PLFLCAT+GTT+ TAVDP+ PLC VAK  GIWVH+DAAYAGSACI PEFRHFIDGV
Sbjct: 250 SGLVPLFLCATVGTTSSTAVDPIGPLCAVAKLHGIWVHIDAAYAGSACICPEFRHFIDGV 309

Query: 61  EGADSFSLNAHKWFFATLDCCCLW-----------ATNPEYLKNKATESKPVVDYKDWQI 109
           E ADSFSLNAHKWFF TLDCCCLW           +T+PEYLKNKAT+SK V+DYKDWQI
Sbjct: 310 EDADSFSLNAHKWFFTTLDCCCLWVKDSDSLVKALSTSPEYLKNKATDSKQVIDYKDWQI 369

Query: 110 TLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCF 169
            LSR FRS+KLW V+R+YG+ NLR FLRSHV MA+ F+ L+  D RFE+V P  FA+VCF
Sbjct: 370 ALSRRFRSMKLWLVLRSYGIANLRTFLRSHVKMAKHFQGLIGMDNRFEIVVPRTFAMVCF 429

Query: 170 RVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFA 229
           R+ P  +   K+    E+  +  E Q NE N +LLES+NASGK YMT+ V+GG+Y IRFA
Sbjct: 430 RLKPAAIFRKKI---VEDDHI--EAQTNEVNAKLLESVNASGKIYMTHAVVGGVYMIRFA 484

Query: 230 TGATLTEERH 239
            GATLTEERH
Sbjct: 485 VGATLTEERH 494

Source: Papaver somniferum

Species: Papaver somniferum

Genus: Papaver

Family: Papaveraceae

Order: Ranunculales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12620328|gb|AAG60665.1|AF314150_1 tyrosine/dopa decarboxylase [Thalictrum flavum subsp. glaucum]

 Score =  342 bits (877), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 165/253 (65%), Positives = 193/253 (76%), Gaps = 14/253 (5%)

Query: 1   AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGV 60
           AGL+PLFLCAT+GTT+ TAVDP+ PLC VA  + IWVHVDAAYAGSACI PEFRHFIDGV
Sbjct: 247 AGLVPLFLCATVGTTSSTAVDPIGPLCKVASDYSIWVHVDAAYAGSACICPEFRHFIDGV 306

Query: 61  EGADSFSLNAHKWFFATLDCCCLW-----------ATNPEYLKNKATESKPVVDYKDWQI 109
           E ADSFSLNAHKWFF TLDCCCLW           +TNPEYL+NKATES  VVDYKDWQI
Sbjct: 307 ENADSFSLNAHKWFFTTLDCCCLWVKEPSALIKALSTNPEYLRNKATESHQVVDYKDWQI 366

Query: 110 TLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCF 169
            LSR FR++KLW V+R+YG+ NLR+FLRSHV MA+ FE  ++ DKRFE+V P  FA+VCF
Sbjct: 367 ALSRRFRAMKLWLVLRSYGVANLRNFLRSHVKMAKNFEGFIALDKRFEIVVPRTFAMVCF 426

Query: 170 RVSPLPVLMDKLKTKYEN---CLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAI 226
           R+ P    +      Y+N       +E + NE NR LLESINASG AYMT+ ++GG+Y I
Sbjct: 427 RLLPPRSPLIIKTNGYQNGNGVYHKDESRANELNRRLLESINASGSAYMTHSMVGGVYMI 486

Query: 227 RFATGATLTEERH 239
           RFA GA+LTEERH
Sbjct: 487 RFAVGASLTEERH 499

Source: Thalictrum flavum subsp. glaucum

Species: Thalictrum flavum

Genus: Thalictrum

Family: Ranunculaceae

Order: Ranunculales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|45387431|gb|AAS60206.1| tyrosine decarboxylase [Aristolochia contorta]

 Score =  339 bits (870), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 162/249 (65%), Positives = 194/249 (77%), Gaps = 18/249 (7%)

Query: 2   GLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVE 61
           GL+PLF+CAT+GTT+ TAVDPL PLC+VA++ G+WVHVDAAYAGSACI PEFRHFIDGVE
Sbjct: 141 GLVPLFVCATVGTTSSTAVDPLGPLCEVAREHGMWVHVDAAYAGSACICPEFRHFIDGVE 200

Query: 62  GADSFSLNAHKWFFATLDCCCLW-----------ATNPEYLKNKATESKPVVDYKDWQIT 110
            ADSFSLNAHKWFF TLDCCCLW           +TNPEYL+NKATES+ VVDYKDWQI 
Sbjct: 201 EADSFSLNAHKWFFTTLDCCCLWVKDPGSLVKALSTNPEYLRNKATESRQVVDYKDWQIA 260

Query: 111 LSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCFR 170
           LSR FR+LKLW V+R+YG+ NLR+FLR+HV MA+ FE L++ DKRFEVV P  FA+VCFR
Sbjct: 261 LSRRFRALKLWLVLRSYGVSNLRNFLRTHVKMAKTFEGLLAMDKRFEVVVPRTFAMVCFR 320

Query: 171 VSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFAT 230
           + P          +         + +NE NR+LLESINASG+ YMT+ V+GG+Y IRFA 
Sbjct: 321 LLPAGGGGGGDDEEG-------LDAVNELNRKLLESINASGRIYMTHSVVGGVYMIRFAV 373

Query: 231 GATLTEERH 239
           GA+LTE+RH
Sbjct: 374 GASLTEDRH 382

Source: Aristolochia contorta

Species: Aristolochia contorta

Genus: Aristolochia

Family: Aristolochiaceae

Order: Piperales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115607203|gb|ABJ16446.1| tyrosine decarboxylase [Aristolochia contorta]

 Score =  334 bits (857), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 160/249 (64%), Positives = 192/249 (77%), Gaps = 18/249 (7%)

Query: 2   GLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVE 61
           GL+PLF+CAT+GTT+ TAVDPL PLC+VA++ G+WVHVDAAYAGSACI PEFRHFIDGVE
Sbjct: 248 GLVPLFVCATVGTTSSTAVDPLGPLCEVAREHGMWVHVDAAYAGSACICPEFRHFIDGVE 307

Query: 62  GADSFSLNAHKWFFATLDCCCLW-----------ATNPEYLKNKATESKPVVDYKDWQIT 110
            ADSFSLNAHKW F  LDCCCLW           +TNPEYL+NKATES+ VVDYKDWQI 
Sbjct: 308 EADSFSLNAHKWLFTILDCCCLWVKDPGSLVKALSTNPEYLRNKATESRQVVDYKDWQIA 367

Query: 111 LSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCFR 170
           LSR FR+LKLW V+R+YG+ NLR+FLR+HV MA+ FE L++ DKRFEVV P  FA+VCFR
Sbjct: 368 LSRRFRALKLWLVLRSYGVSNLRNFLRTHVKMAKTFEGLLAMDKRFEVVVPRTFAMVCFR 427

Query: 171 VSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFAT 230
           + P          +  +        +NE NR+LLESINASG+ YMT+ V+GG+Y IRFA 
Sbjct: 428 LLPAGGGGGGDDEEGLDA-------VNELNRKLLESINASGRIYMTHSVVGGVYMIRFAV 480

Query: 231 GATLTEERH 239
           GA+LTE+RH
Sbjct: 481 GASLTEDRH 489

Source: Aristolochia contorta

Species: Aristolochia contorta

Genus: Aristolochia

Family: Aristolochiaceae

Order: Piperales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217038851|gb|ACJ76782.1| tyrosine/DOPA decarboxylase [Argemone mexicana]

 Score =  331 bits (849), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 162/264 (61%), Positives = 192/264 (72%), Gaps = 25/264 (9%)

Query: 1   AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGV 60
           AGLIPLF+C T+GTT+ TAVDP+ P+C+VAK++ +WVHVDAAYAGSACI PEFRHFIDGV
Sbjct: 248 AGLIPLFVCPTVGTTSSTAVDPIGPICEVAKEYEMWVHVDAAYAGSACICPEFRHFIDGV 307

Query: 61  EGADSFSLNAHKWFFATLDCCCLW-----------ATNPEYLKNKATESKPVVDYKDWQI 109
           E ADSFSLNAHKWFF TLDCCCLW           +TNPEYL+NKATESK VVDYKDWQI
Sbjct: 308 ENADSFSLNAHKWFFTTLDCCCLWVKDPSALVKALSTNPEYLRNKATESKQVVDYKDWQI 367

Query: 110 TLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCF 169
            LSR FRS+KLW V+RNYG+ NLR+FLRSHV MA+ FE L++ D RFE+  P  FA+VCF
Sbjct: 368 ALSRRFRSMKLWMVLRNYGVANLRNFLRSHVKMAKQFEGLIASDNRFEICVPRTFAMVCF 427

Query: 170 RVSPLPVLMDKLKTKYENCLLS----EEEQINE----------FNRELLESINASGKAYM 215
           R+ P     D    + +   +S     E  INE           N+  LE +NA+G  YM
Sbjct: 428 RLLPPKSTRDNRVREEDGLFVSGVHDHENNINEDDHLLVVANKLNQIYLEKVNATGSLYM 487

Query: 216 TNVVLGGIYAIRFATGATLTEERH 239
           T+ V+GGIY IRFA G+TLTEERH
Sbjct: 488 THAVVGGIYMIRFAVGSTLTEERH 511

Source: Argemone mexicana

Species: Argemone mexicana

Genus: Argemone

Family: Papaveraceae

Order: Ranunculales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	239
TAIR|locus:2139855	547	TYRDC "L-tyrosine decarboxylas	0.933	0.407	0.533	4.5e-66
TAIR|locus:2038937	490	AAS "AT2G20340" [Arabidopsis t	0.937	0.457	0.536	7.4e-66
ZFIN|ZDB-GENE-040426-2656	480	ddc "dopa decarboxylase" [Dani	0.895	0.445	0.418	1.9e-44
UNIPROTKB|E1BV90	485	DDC "Uncharacterized protein"	0.907	0.447	0.412	2.8e-43
MGI|MGI:94876	480	Ddc "dopa decarboxylase" [Mus	0.907	0.452	0.408	2.5e-42
UNIPROTKB|P27718	487	DDC "Aromatic-L-amino-acid dec	0.907	0.445	0.396	5.2e-42
UNIPROTKB|F1PFV0	480	DDC "Uncharacterized protein"	0.903	0.45	0.397	5.2e-42
UNIPROTKB|E7EU95	402	DDC "Aromatic-L-amino-acid dec	0.907	0.539	0.396	2.8e-41
UNIPROTKB|H7BZF7	361	DDC "Aromatic-L-amino-acid dec	0.907	0.601	0.396	2.8e-41
UNIPROTKB|P20711	480	DDC "Aromatic-L-amino-acid dec	0.907	0.452	0.396	2.8e-41

TAIR|locus:2139855 TYRDC "L-tyrosine decarboxylase" [Arabidopsis thaliana (taxid:3702)]

 Score = 672 (241.6 bits), Expect = 4.5e-66, P = 4.5e-66
 Identities = 134/251 (53%), Positives = 175/251 (69%)

Query:     2 GLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVE 61
             G IP F+CAT+GTT+  AVDPL PL ++AK++GIW+HVDAAYAG+ACI PE+R FIDG+E
Sbjct:   291 GFIPFFICATVGTTSSAAVDPLVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFIDGIE 350

Query:    62 GADSFSLNAHKWFFATLDCCCLWA-----------TNPEYLKNKATESKP--VVDYKDWQ 108
              ADSF++NAHKW FA   C  LW            TNPEYL+ K   SK   VV+YKDWQ
Sbjct:   351 NADSFNMNAHKWLFANQTCSPLWVKDRYSLIDALKTNPEYLEFKVKVSKKDTVVNYKDWQ 410

Query:   109 ITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVC 168
             I+LSR FRSLKLW V+R YG ENLR+F+R HVN+A+ FE  V+ D  FEVV   +F++VC
Sbjct:   411 ISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRYFSLVC 470

Query:   169 FRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRF 228
             FR++P+                 +E+Q NE NRELL ++N++GK ++++  L G + +RF
Sbjct:   471 FRLAPVD---------------GDEDQCNERNRELLAAVNSTGKIFISHTALSGKFVLRF 515

Query:   229 ATGATLTEERH 239
             A GA LTEE+H
Sbjct:   516 AVGAPLTEEKH 526

GO:0003824 "catalytic activity" evidence=IEA

GO:0004837 "tyrosine decarboxylase activity" evidence=ISS;IDA

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0006520 "cellular amino acid metabolic process" evidence=ISS

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0004058 "aromatic-L-amino-acid decarboxylase activity" evidence=IDA

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP

GO:1901695 "tyramine biosynthetic process" evidence=IMP

TAIR|locus:2038937 AAS "AT2G20340" [Arabidopsis thaliana (taxid:3702)]

 Score = 670 (240.9 bits), Expect = 7.4e-66, P = 7.4e-66
 Identities = 134/250 (53%), Positives = 170/250 (68%)

Query:     1 AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGV 60
             AGLIP FLCA +GTT+ TAVDPL  L  +A   GIW HVDAAYAGSACI PE+R +IDGV
Sbjct:   238 AGLIPFFLCANVGTTSSTAVDPLAALGKIANSNGIWFHVDAAYAGSACICPEYRQYIDGV 297

Query:    61 EGADSFSLNAHKWFFATLDCCCLW-----------ATNPEYLKNKATESKPVVDYKDWQI 109
             E ADSF++NAHKWF    DC  LW           +TNPE+LKNKA+++  VVDYKDWQI
Sbjct:   298 ETADSFNMNAHKWFLTNFDCSLLWVKDQDSLTLALSTNPEFLKNKASQANLVVDYKDWQI 357

Query:   110 TLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCF 169
              L R FRSLKLW V+R YG E L+ ++R+H+ +A+ FE+LVS D  FE+V P  FA+VCF
Sbjct:   358 PLGRRFRSLKLWMVLRLYGSETLKSYIRNHIKLAKEFEQLVSQDPNFEIVTPRIFALVCF 417

Query:   170 RVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFA 229
             R+ P+                 EE++ N  NRELL+++N+SGK +M++  L G   +R A
Sbjct:   418 RLVPVK---------------DEEKKCNNRNRELLDAVNSSGKLFMSHTALSGKIVLRCA 462

Query:   230 TGATLTEERH 239
              GA LTEE+H
Sbjct:   463 IGAPLTEEKH 472

GO:0004837 "tyrosine decarboxylase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006520 "cellular amino acid metabolic process" evidence=ISS

GO:0009611 "response to wounding" evidence=IEP

GO:1990055 "phenylacetaldehyde synthase activity" evidence=IDA

GO:0006559 "L-phenylalanine catabolic process" evidence=IDA

ZFIN|ZDB-GENE-040426-2656 ddc "dopa decarboxylase" [Danio rerio (taxid:7955)]

 Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 106/253 (41%), Positives = 140/253 (55%)

Query:     1 AGLIPLFLCATIGTTAITAVD---PLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFI 57
             AGLIP F CAT+GTTA  A D    L P+C+  K   +W+H+DAAYAGSA I PEFR  +
Sbjct:   232 AGLIPFFFCATLGTTASCAFDCITELGPICNAEK---MWMHIDAAYAGSAFICPEFRPLL 288

Query:    58 DGVEGADSFSLNAHKWFFATLDCCCLWATN-----------PEYLKNKATESKPVVDYKD 106
             +G+E ADSF+ N HKW     DC  +W              P YLK+   ES  V DY+ 
Sbjct:   289 NGIEFADSFNFNPHKWLLINFDCSAMWVKKRADIIGAFKMEPLYLKHDHQESGLVTDYRH 348

Query:   107 WQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAV 166
             WQI L R FRSLK+WFV R YG++ L+ ++R HV +A+ FE  V  D+RFE+       +
Sbjct:   349 WQIPLGRRFRSLKMWFVFRMYGLKALQAYIRKHVGLAKEFEAFVRADQRFEISADVVMGL 408

Query:   167 VCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAI 226
             VCFR+   P                     NE +  LL+ IN++ K ++    L G++ +
Sbjct:   409 VCFRLKG-P---------------------NELSENLLKRINSARKIHLVPCHLAGLFVL 446

Query:   227 RFATGATLTEERH 239
             RFA  A  TE RH
Sbjct:   447 RFAVCARATESRH 459

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016829 "lyase activity" evidence=IEA

UNIPROTKB|E1BV90 DDC "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 103/250 (41%), Positives = 135/250 (54%)

Query:     1 AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGV 60
             +GLIP F CAT+GTT   + D L  L  +  +  IW+H+DAAYAGSA I PEFRHF++GV
Sbjct:   232 SGLIPFFFCATLGTTPCCSFDKLLELGPICNKENIWMHIDAAYAGSAFICPEFRHFLNGV 291

Query:    61 EGADSFSLNAHKWFFATLDCCCLWATN-----------PEYLKNKATESKPVVDYKDWQI 109
             E ADSF+ N HKW     DC  +W              P YL++   ES  + DY+ WQI
Sbjct:   292 EFADSFNFNPHKWLLVNFDCSAMWVKKRSDLIGAFKLEPLYLQHHHQESGLITDYRHWQI 351

Query:   110 TLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCF 169
              L R FRSLKLWFV+R YG+  L+  +R HV ++  FE LV  D+RFE+       +VCF
Sbjct:   352 PLGRRFRSLKLWFVLRMYGVTGLQEHIRKHVRLSHQFEHLVLQDERFEICAEVVLGLVCF 411

Query:   170 RVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFA 229
             R          LK              NE N+ LL+SIN + K ++    L   + +RFA
Sbjct:   412 R----------LKGS------------NELNKALLKSINEAKKIHLVPCHLREKFVLRFA 449

Query:   230 TGATLTEERH 239
               +   E  H
Sbjct:   450 ICSRTVESTH 459

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0009636 "response to toxic substance" evidence=IEA

MGI|MGI:94876 Ddc "dopa decarboxylase" [Mus musculus (taxid:10090)]

 Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
 Identities = 102/250 (40%), Positives = 137/250 (54%)

Query:     1 AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGV 60
             AGLIP F+ AT+GTT+  + D L  +  +  Q G+W+H+DAAYAGSA I PEFR+ ++GV
Sbjct:   232 AGLIPFFVVATLGTTSCCSFDNLLEVGPICNQEGVWLHIDAAYAGSAFICPEFRYLLNGV 291

Query:    61 EGADSFSLNAHKWFFATLDCCCLW---------ATN--PEYLKNKATESKPVVDYKDWQI 109
             E ADSF+ N HKW     DC  +W         A N  P YLK+   +S  + DY+ WQI
Sbjct:   292 EFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFNMDPVYLKHSHQDSGFITDYRHWQI 351

Query:   110 TLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCF 169
              L R FRSLK+WFV R YG++ L+ ++R HV ++  FE LV  D RFE+       +VCF
Sbjct:   352 PLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVELSHEFESLVRQDPRFEICTEVILGLVCF 411

Query:   170 RVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFA 229
             R          LK              NE N  LL+ IN++ K ++    L   + +RFA
Sbjct:   412 R----------LKGS------------NELNETLLQRINSAKKIHLVPCRLRDKFVLRFA 449

Query:   230 TGATLTEERH 239
               A   E  H
Sbjct:   450 VCARTVESAH 459

GO:0003824 "catalytic activity" evidence=IEA

GO:0004058 "aromatic-L-amino-acid decarboxylase activity" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=ISO

GO:0009636 "response to toxic substance" evidence=IDA

GO:0015842 "synaptic vesicle amine transport" evidence=ISO

GO:0016597 "amino acid binding" evidence=ISO

GO:0016829 "lyase activity" evidence=IEA

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=ISO

GO:0030170 "pyridoxal phosphate binding" evidence=ISO

GO:0030424 "axon" evidence=ISO

GO:0042416 "dopamine biosynthetic process" evidence=ISO

GO:0042423 "catecholamine biosynthetic process" evidence=IEA

GO:0042427 "serotonin biosynthetic process" evidence=ISO

GO:0043025 "neuronal cell body" evidence=ISO

UNIPROTKB|P27718 DDC "Aromatic-L-amino-acid decarboxylase" [Bos taurus (taxid:9913)]

 Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 99/250 (39%), Positives = 137/250 (54%)

Query:     1 AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGV 60
             AGLIP F+ AT+GTT+  + D L  +  +  + G+W+HVDAAYAGSA I PEFRH ++GV
Sbjct:   232 AGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEGLWLHVDAAYAGSAFICPEFRHLLNGV 291

Query:    61 EGADSFSLNAHKWFFATLDCCCLWAT-----------NPEYLKNKATESKPVVDYKDWQI 109
             E ADSF+ N HKW     DC  +W             +P YL++   +S  + DY+ WQ+
Sbjct:   292 EFADSFNFNPHKWLLVNFDCSAMWVKKRTDLTGAFRLDPVYLRHSHQDSGLITDYRHWQL 351

Query:   110 TLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCF 169
              L R FRSLK+WFV R YG++ L+ ++R HV ++  FE LV  D RFE+       +VCF
Sbjct:   352 PLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHAFEALVRQDTRFEICAEVILGLVCF 411

Query:   170 RVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFA 229
             R          LK              N+ N  LLESIN++ K ++    L   + +RFA
Sbjct:   412 R----------LKGS------------NKLNEALLESINSAKKIHLVPCSLRDRFVLRFA 449

Query:   230 TGATLTEERH 239
               +   E  H
Sbjct:   450 ICSRTVELAH 459

GO:0042416 "dopamine biosynthetic process" evidence=IEA

GO:0004058 "aromatic-L-amino-acid decarboxylase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

UNIPROTKB|F1PFV0 DDC "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 99/249 (39%), Positives = 135/249 (54%)

Query:     2 GLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVE 61
             GLIP F+ AT+GTT+  + D L  +  +  +  +W+H+DAAYAGS+ I PEFRH ++GVE
Sbjct:   233 GLIPFFVVATLGTTSCCSFDNLLEVGPICNKEDMWLHIDAAYAGSSFICPEFRHLLNGVE 292

Query:    62 GADSFSLNAHKWFFATLDCCCLWAT-----------NPEYLKNKATESKPVVDYKDWQIT 110
              ADSF+ N HKW     DC  +W             +P YLK+   +S  + DY+ WQ+ 
Sbjct:   293 FADSFNFNPHKWLLVNFDCSAMWVKKRTDLIGAFKLDPLYLKHNHQDSGLITDYRHWQLP 352

Query:   111 LSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCFR 170
             L R FRSLK+WFV R YG++ L+ ++R HV +A  FERLV  D RFE+       +VCFR
Sbjct:   353 LGRRFRSLKMWFVFRMYGVKGLQAYIRKHVRLAHEFERLVQQDPRFEICTEVTLGLVCFR 412

Query:   171 VSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFAT 230
                       LK              N  N ELLE IN++ K ++    L   + +RFA 
Sbjct:   413 ----------LKGS------------NRLNEELLERINSAKKIHLVPCHLRDKFVLRFAI 450

Query:   231 GATLTEERH 239
              A   E  H
Sbjct:   451 CARTVESAH 459

GO:0009636 "response to toxic substance" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

UNIPROTKB|E7EU95 DDC "Aromatic-L-amino-acid decarboxylase" [Homo sapiens (taxid:9606)]

 Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
 Identities = 99/250 (39%), Positives = 134/250 (53%)

Query:     1 AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGV 60
             AGLIP F+ AT+GTT   + D L  +  +  +  IW+HVDAAYAGSA I PEFRH ++GV
Sbjct:   154 AGLIPFFMVATLGTTTCCSFDNLLEVGPICNKEDIWLHVDAAYAGSAFICPEFRHLLNGV 213

Query:    61 EGADSFSLNAHKWFFATLDCCCLWAT-----------NPEYLKNKATESKPVVDYKDWQI 109
             E ADSF+ N HKW     DC  +W             +P YLK+   +S  + DY+ WQI
Sbjct:   214 EFADSFNFNPHKWLLVNFDCSAMWVKKRTDLTGAFRLDPTYLKHSHQDSGLITDYRHWQI 273

Query:   110 TLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCF 169
              L R FRSLK+WFV R YG++ L+ ++R HV ++  FE LV  D RFE+       +VCF
Sbjct:   274 PLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFESLVRQDPRFEICVEVILGLVCF 333

Query:   170 RVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFA 229
             R          LK              N+ N  LL+ IN++ K ++    L   + +RFA
Sbjct:   334 R----------LKGS------------NKVNEALLQRINSAKKIHLVPCHLRDKFVLRFA 371

Query:   230 TGATLTEERH 239
               +   E  H
Sbjct:   372 ICSRTVESAH 381

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|H7BZF7 DDC "Aromatic-L-amino-acid decarboxylase" [Homo sapiens (taxid:9606)]

 Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
 Identities = 99/250 (39%), Positives = 134/250 (53%)

Query:     1 AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGV 60
             AGLIP F+ AT+GTT   + D L  +  +  +  IW+HVDAAYAGSA I PEFRH ++GV
Sbjct:   113 AGLIPFFMVATLGTTTCCSFDNLLEVGPICNKEDIWLHVDAAYAGSAFICPEFRHLLNGV 172

Query:    61 EGADSFSLNAHKWFFATLDCCCLWAT-----------NPEYLKNKATESKPVVDYKDWQI 109
             E ADSF+ N HKW     DC  +W             +P YLK+   +S  + DY+ WQI
Sbjct:   173 EFADSFNFNPHKWLLVNFDCSAMWVKKRTDLTGAFRLDPTYLKHSHQDSGLITDYRHWQI 232

Query:   110 TLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCF 169
              L R FRSLK+WFV R YG++ L+ ++R HV ++  FE LV  D RFE+       +VCF
Sbjct:   233 PLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFESLVRQDPRFEICVEVILGLVCF 292

Query:   170 RVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFA 229
             R          LK              N+ N  LL+ IN++ K ++    L   + +RFA
Sbjct:   293 R----------LKGS------------NKVNEALLQRINSAKKIHLVPCHLRDKFVLRFA 330

Query:   230 TGATLTEERH 239
               +   E  H
Sbjct:   331 ICSRTVESAH 340

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|P20711 DDC "Aromatic-L-amino-acid decarboxylase" [Homo sapiens (taxid:9606)]

 Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
 Identities = 99/250 (39%), Positives = 134/250 (53%)

Query:     1 AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGV 60
             AGLIP F+ AT+GTT   + D L  +  +  +  IW+HVDAAYAGSA I PEFRH ++GV
Sbjct:   232 AGLIPFFMVATLGTTTCCSFDNLLEVGPICNKEDIWLHVDAAYAGSAFICPEFRHLLNGV 291

Query:    61 EGADSFSLNAHKWFFATLDCCCLWAT-----------NPEYLKNKATESKPVVDYKDWQI 109
             E ADSF+ N HKW     DC  +W             +P YLK+   +S  + DY+ WQI
Sbjct:   292 EFADSFNFNPHKWLLVNFDCSAMWVKKRTDLTGAFRLDPTYLKHSHQDSGLITDYRHWQI 351

Query:   110 TLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCF 169
              L R FRSLK+WFV R YG++ L+ ++R HV ++  FE LV  D RFE+       +VCF
Sbjct:   352 PLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFESLVRQDPRFEICVEVILGLVCF 411

Query:   170 RVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFA 229
             R          LK              N+ N  LL+ IN++ K ++    L   + +RFA
Sbjct:   412 R----------LKGS------------NKVNEALLQRINSAKKIHLVPCHLRDKFVLRFA 449

Query:   230 TGATLTEERH 239
               +   E  H
Sbjct:   450 ICSRTVESAH 459

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0007623 "circadian rhythm" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0010259 "multicellular organismal aging" evidence=IEA

GO:0015842 "synaptic vesicle amine transport" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0033076 "isoquinoline alkaloid metabolic process" evidence=IEA

GO:0035690 "cellular response to drug" evidence=IEA

GO:0042427 "serotonin biosynthetic process" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0046684 "response to pyrethroid" evidence=IEA

GO:0052314 "phytoalexin metabolic process" evidence=IEA

GO:0071312 "cellular response to alkaloid" evidence=IEA

GO:0071363 "cellular response to growth factor stimulus" evidence=IEA

GO:0042416 "dopamine biosynthetic process" evidence=IEA

GO:0004058 "aromatic-L-amino-acid decarboxylase activity" evidence=IDA;TAS

GO:0005829 "cytosol" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0042423 "catecholamine biosynthetic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0046219 "indolalkylamine biosynthetic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	4.1.1	0.766

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00028367001	SubName- Full=Chromosome chr10 scaffold_43, whole genome shotgun sequence; (492 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00037462001	RecName- Full=Aspartate aminotransferase; EC=2.6.1.1; (427 aa)						•			0.899
	GSVIVG00032723001	RecName- Full=Aspartate aminotransferase; EC=2.6.1.1; (410 aa)						•			0.899
	GSVIVG00032463001	RecName- Full=Aspartate aminotransferase; EC=2.6.1.1; (450 aa)						•			0.899
	GSVIVG00027735001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (422 aa)						•			0.899
	GSVIVG00018772001	RecName- Full=Aspartate aminotransferase; EC=2.6.1.1; (423 aa)						•			0.899
	GSVIVG00018632001	SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (419 aa)						•			0.899
	GSVIVG00018631001	SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (419 aa)						•			0.899
	GSVIVG00018628001	SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (419 aa)						•			0.899
	GSVIVG00016723001	RecName- Full=Aspartate aminotransferase; EC=2.6.1.1; (411 aa)						•			0.899
	GSVIVG00016002001	SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (703 aa)						•			0.899

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	239
PLN02880	490	PLN02880, PLN02880, tyrosine decarboxylase	1e-105
PLN02590	539	PLN02590, PLN02590, probable tyrosine decarboxylas	6e-93
pfam00282	373	pfam00282, Pyridoxal_deC, Pyridoxal-dependent deca	1e-77
cd06450	345	cd06450, DOPA_deC_like, DOPA decarboxylase family	1e-61
COG0076	460	COG0076, GadB, Glutamate decarboxylase and related	2e-35
TIGR03812	373	TIGR03812, tyr_de_CO2_Arch, tyrosine decarboxylase	1e-14
TIGR03799	522	TIGR03799, NOD_PanD_pyr, putative pyridoxal-depend	3e-13
PRK02769	380	PRK02769, PRK02769, histidine decarboxylase; Provi	3e-09
PRK13520	371	PRK13520, PRK13520, L-tyrosine decarboxylase; Prov	8e-09
cd01494	170	cd01494, AAT_I, Aspartate aminotransferase (AAT) s	1e-08
PLN03032	374	PLN03032, PLN03032, serine decarboxylase; Provisio	0.001

>gnl|CDD|215475 PLN02880, PLN02880, tyrosine decarboxylase

 Score =  313 bits (804), Expect = e-105
 Identities = 136/250 (54%), Positives = 177/250 (70%), Gaps = 26/250 (10%)

Query: 1   AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGV 60
           +GLIP FLCAT+GTT+ TAVDPL  L  +AK  G+W HVDAAYAGSACI PE+RH+IDGV
Sbjct: 236 SGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWFHVDAAYAGSACICPEYRHYIDGV 295

Query: 61  EGADSFSLNAHKWFFATLDCCCLW-----------ATNPEYLKNKATESKPVVDYKDWQI 109
           E ADSF++NAHKWF    DC  LW           +TNPE+LKNKA+++  VVDYKDWQI
Sbjct: 296 EEADSFNMNAHKWFLTNFDCSLLWVKDRNALIQSLSTNPEFLKNKASQANSVVDYKDWQI 355

Query: 110 TLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCF 169
            L R FRSLKLW V+R YG+ENL+ ++R+H+ +A+ FE+LV+ D RFEVV P  F++VCF
Sbjct: 356 PLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTPRIFSLVCF 415

Query: 170 RVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFA 229
           R+ P                 + E+  N+ N +LL+++N+SGK ++++ VL G Y +RFA
Sbjct: 416 RLVPPK---------------NNEDNGNKLNHDLLDAVNSSGKIFISHTVLSGKYVLRFA 460

Query: 230 TGATLTEERH 239
            GA LTEERH
Sbjct: 461 VGAPLTEERH 470

Length = 490

>gnl|CDD|178200 PLN02590, PLN02590, probable tyrosine decarboxylase

 Score =  282 bits (723), Expect = 6e-93
 Identities = 132/249 (53%), Positives = 175/249 (70%), Gaps = 26/249 (10%)

Query: 2   GLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVE 61
           G IP F+CAT+GTT+  AVDPL PL ++AK++GIW+HVDAAYAG+ACI PE+R FIDG+E
Sbjct: 285 GFIPFFICATVGTTSSAAVDPLVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFIDGIE 344

Query: 62  GADSFSLNAHKWFFATLDCCCLWA-----------TNPEYLKNKATESKPVVDYKDWQIT 110
            ADSF++NAHKW FA   C  LW            TNPEYL+ K ++   VV+YKDWQI+
Sbjct: 345 NADSFNMNAHKWLFANQTCSPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVNYKDWQIS 404

Query: 111 LSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCFR 170
           LSR FRSLKLW V+R YG ENLR+F+R HVN+A+ FE  V+ D  FEVV   +F++VCFR
Sbjct: 405 LSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRYFSLVCFR 464

Query: 171 VSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFAT 230
           ++P+                 +E+Q NE NRELL ++N++GK ++++  L G + +RFA 
Sbjct: 465 LAPVD---------------GDEDQCNERNRELLAAVNSTGKIFISHTALSGKFVLRFAV 509

Query: 231 GATLTEERH 239
           GA LTEE+H
Sbjct: 510 GAPLTEEKH 518

Length = 539

>gnl|CDD|215836 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarboxylase conserved domain

 Score =  238 bits (609), Expect = 1e-77
 Identities = 95/181 (52%), Positives = 118/181 (65%), Gaps = 11/181 (6%)

Query: 1   AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGV 60
            GLIP F+CAT+GTT   A DPL+ L D+  ++ +W+HVDAAYAGSA I PEFRH++ G+
Sbjct: 191 NGLIPFFVCATLGTTGSGAFDPLQELGDICNKYDLWLHVDAAYAGSAFICPEFRHWLFGI 250

Query: 61  EGADSFSLNAHKWFFATLDCCCLW-----------ATNPEYLKNKATESKPVVDYKDWQI 109
           E ADSFS N HKW    LDC  LW             NPEYL +   +S   VDY DWQI
Sbjct: 251 ERADSFSFNPHKWMLVLLDCSALWVRDKGALQQALQFNPEYLGHNDKQSDVAVDYGDWQI 310

Query: 110 TLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCF 169
            LSR FR LKLWFV+R+YG+E L++ +R HV +A+ FE LV  D RFE+       +VCF
Sbjct: 311 PLSRRFRILKLWFVLRSYGVEGLQNQIRRHVELAKYFEALVRKDSRFEICAERGLGLVCF 370

Query: 170 R 170
           R
Sbjct: 371 R 371

Length = 373

>gnl|CDD|99743 cd06450, DOPA_deC_like, DOPA decarboxylase family

 Score =  196 bits (500), Expect = 1e-61
 Identities = 66/239 (27%), Positives = 106/239 (44%), Gaps = 49/239 (20%)

Query: 1   AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGV 60
            GL P+ + AT GTT   A+DPL+ + D+A+++ +W+HVDAAY G    FPE RH   G+
Sbjct: 145 EGLNPIMVVATAGTTDTGAIDPLEEIADLAEKYDLWLHVDAAYGGFLLPFPEPRHLDFGI 204

Query: 61  EGADSFSLNAHKWFFATLDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKL 120
           E  DS S++ HK+    L C  +                                R+LKL
Sbjct: 205 ERVDSISVDPHKYGLVPLGCSAVL------------------------------VRALKL 234

Query: 121 WFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCFRVSPLPVLMDK 180
           W  +R +G +     +   V++A+    L+  D  FE++   + ++VCFR+ P       
Sbjct: 235 WATLRRFGRDGYGEHIDRIVDLAKYLAELIRADPGFELLGEPNLSLVCFRLKP------- 287

Query: 181 LKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTEERH 239
                         +++E N +L + +N  G  ++    LGG   +RF     LT    
Sbjct: 288 ------------SVKLDELNYDLSDRLNERGGWHVPATTLGGPNVLRFVVTNPLTTRDD 334

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. Length = 345

>gnl|CDD|223154 COG0076, GadB, Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

 Score =  130 bits (329), Expect = 2e-35
 Identities = 57/235 (24%), Positives = 101/235 (42%), Gaps = 16/235 (6%)

Query: 10  ATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRH-FIDGVEGADSFSL 68
            T GTT   ++D ++ L D+A+++GIW+HVDAA+ G    F E    +  G+EG DS ++
Sbjct: 213 GTAGTTDTGSIDDIEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGRWDFGLEGVDSITV 272

Query: 69  NAHKWFFATLDCCCLWATNPEYL-KNKATESKPVVDYKDWQITL--SRS-FRSLKLWFVI 124
           + HK+  A + C  +   + E L +        +        T+  SR   ++L L+  +
Sbjct: 273 DGHKYGLAPIGCGVVLFRDEEALRRILIFADYYLPGGGIPNFTILGSRPGRQALALYANL 332

Query: 125 RNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTK 184
           R  G E  R  L   + +AR     +     FE+V      +V FR+             
Sbjct: 333 RRLGREGYRKLLDRTLELARYLAEELEKLGDFELVNEPELPIVAFRLKD----------- 381

Query: 185 YENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTEERH 239
            E+ L    E+++    ++   +   G A +    + G   ++F     L  +R 
Sbjct: 382 DEDTLADLSERLDRRGWQVPAQLLPKGLAIVFGTHVTGRQGLKFIVANLLITDRE 436

Length = 460

>gnl|CDD|234361 TIGR03812, tyr_de_CO2_Arch, tyrosine decarboxylase MnfA

 Score = 71.6 bits (176), Expect = 1e-14
 Identities = 45/179 (25%), Positives = 77/179 (43%), Gaps = 10/179 (5%)

Query: 13  GTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIF----PEFRHFIDGVEGADSFSL 68
           GTT +  +D ++ L  +A + GI++HVDAA+ G    F         F   + G  S ++
Sbjct: 162 GTTELGQIDDIEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGVQSITI 221

Query: 69  NAHKWFFATLDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNY 127
           + HK   + +    +   +  YLK  + ++  +   K   IT +RS   +   + VI+  
Sbjct: 222 DPHKMGLSPIPAGGILFRSKSYLKYLSVDAPYLTVKKQATITGTRSGASAAATYAVIKYL 281

Query: 128 GMENLRHFLRSHVNMARLFERLVSGDKR--FEVVFPCHFAVVCFRVSPLPVLMDKLKTK 184
           G E  R  +   +   R    LV   K+  FE V      +V F V     +  KL+ +
Sbjct: 282 GREGYRKIVAECMENTR---YLVEELKKIGFEPVIEPVLNIVAFEVDDPEEVRKKLRDR 337

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 373

>gnl|CDD|163511 TIGR03799, NOD_PanD_pyr, putative pyridoxal-dependent aspartate 1-decarboxylase

 Score = 68.2 bits (167), Expect = 3e-13
 Identities = 27/71 (38%), Positives = 43/71 (60%)

Query: 5   PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGAD 64
           PL +    GTT    +DPL  + D+A++ G   HVDAA+ G+  +   +RH + G+E AD
Sbjct: 266 PLAIVGVAGTTETGNIDPLDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERAD 325

Query: 65  SFSLNAHKWFF 75
           S +++AHK  +
Sbjct: 326 SVTIDAHKQLY 336

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent) [Biosynthesis of cofactors, prosthetic groups, and carriers, Pantothenate and coenzyme A]. Length = 522

>gnl|CDD|235068 PRK02769, PRK02769, histidine decarboxylase; Provisional

 Score = 56.2 bits (136), Expect = 3e-09
 Identities = 50/173 (28%), Positives = 87/173 (50%), Gaps = 20/173 (11%)

Query: 5   PLFLCATIGTTAITAVDPLKPLCDVAKQFGI---WVHVDAAYAGSACIFPEFRHFIDGVE 61
           P  + A IGTT   A+D +K + ++ K+ GI   ++H DAA +G    F          +
Sbjct: 161 PPIIFANIGTTMTGAIDNIKEIQEILKKIGIDDYYIHADAALSGMILPFVNNPPPFSFAD 220

Query: 62  GADSFSLNAHKWFFATLDCCCLWATNPEYLKNKATESKPVVDY---KDWQITLSRS-FRS 117
           G DS +++ HK+  + + C  +     +Y++  + +    VDY   +D  I+ SR+   +
Sbjct: 221 GIDSIAISGHKFIGSPMPCGIV-LAKKKYVERISVD----VDYIGSRDQTISGSRNGHTA 275

Query: 118 LKLWFVIRNYGMENLRHFLRSHVNMAR-LFERL-VSGDKRFE------VVFPC 162
           L LW  IR+ G + LR  ++  ++MA+   +RL  +G   +       VVFPC
Sbjct: 276 LLLWAAIRSLGSKGLRQRVQHCLDMAQYAVDRLQANGIPAWRNPNSITVVFPC 328

Length = 380

>gnl|CDD|237409 PRK13520, PRK13520, L-tyrosine decarboxylase; Provisional

 Score = 54.9 bits (133), Expect = 8e-09
 Identities = 47/179 (26%), Positives = 76/179 (42%), Gaps = 13/179 (7%)

Query: 13  GTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIF----PEFRHFIDGVEGADSFSL 68
           GTT +  VDP+  L  +A + GI++HVDAA+ G    F    P F  F   + G DS ++
Sbjct: 160 GTTELGQVDPIPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNF-DF--SLPGVDSITI 216

Query: 69  NAHKWFFATLDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNY 127
           + HK   A +    +   +  YL   A ++  +   K   +T +RS       + V++  
Sbjct: 217 DPHKMGLAPIPAGGILFRDESYLDALAVDTPYLTSKKQATLTGTRSGAGVAATYAVMKYL 276

Query: 128 GMENLRHFLRSHVNMARLFERLVSGDKR--FEVVFPCHFAVVCFRVSPLPVLMDKLKTK 184
           G E  R  +   +   R    L    K   FE V      +V F       + +KL+ +
Sbjct: 277 GREGYRKVVERCMENTR---WLAEELKERGFEPVIEPVLNIVAFDDPNPDEVREKLRER 332

Length = 371

>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

 Score = 52.4 bits (126), Expect = 1e-08
 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 3/74 (4%)

Query: 1   AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGV 60
           A      +  T  TT+   + PLK +  +AK++GI + VDAA AG A   P         
Sbjct: 89  AKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPAPGVL---IPE 145

Query: 61  EGADSFSLNAHKWF 74
            GAD  + + HK  
Sbjct: 146 GGADVVTFSLHKNL 159

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170

>gnl|CDD|166673 PLN03032, PLN03032, serine decarboxylase; Provisional

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 41/164 (25%), Positives = 67/164 (40%), Gaps = 24/164 (14%)

Query: 5   PLFLCATIGTTAITAVDPLKPLCDVAKQFGI-----WVHVDAAYAGSACIFPEFRHFIDG 59
           P  L   IGTT   AVD L  +  + K+ G      ++H D A  G    F      +  
Sbjct: 162 PAILNVNIGTTVKGAVDDLDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSRAPEVTF 221

Query: 60  VEGADSFSLNAHKWFFATLDCCCLWATNPEYLKNKATESKPVVDY---KDWQITLSRSFR 116
            +   S S++ HK+    + C     T  +++K  +      V+Y   +D  I  SR+  
Sbjct: 222 RKPIGSVSVSGHKFLGCPMPCGVAL-TRKKHVKALSQN----VEYLNSRDATIMGSRNGH 276

Query: 117 S-LKLWFVIRNYGMENLR----------HFLRSHVNMARLFERL 149
           + L LW+ +R  G   ++          H+L+  +  A L  RL
Sbjct: 277 APLYLWYTLRRKGYRGIKRDVQHCMRNAHYLKDRLTEAGLTCRL 320

Length = 374

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	239
PLN02590	539	probable tyrosine decarboxylase	100.0
PLN02880	490	tyrosine decarboxylase	100.0
TIGR03799	522	NOD_PanD_pyr putative pyridoxal-dependent aspartat	100.0
KOG0628	511	consensus Aromatic-L-amino-acid/L-histidine decarb	100.0
PF00282	373	Pyridoxal_deC: Pyridoxal-dependent decarboxylase c	100.0
KOG0629	510	consensus Glutamate decarboxylase and related prot	100.0
TIGR03811	608	tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu	100.0
TIGR01788	431	Glu-decarb-GAD glutamate decarboxylase. This model	100.0
COG0076	460	GadB Glutamate decarboxylase and related PLP-depen	100.0
PLN02263	470	serine decarboxylase	100.0
PRK02769	380	histidine decarboxylase; Provisional	100.0
PLN03032	374	serine decarboxylase; Provisional	99.97
COG0520	405	csdA Selenocysteine lyase/Cysteine desulfurase [Po	99.97
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	99.96
PRK13520	371	L-tyrosine decarboxylase; Provisional	99.91
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	99.91
PF00266	371	Aminotran_5: Aminotransferase class-V; InterPro: I	99.91
COG1104	386	NifS Cysteine sulfinate desulfinase/cysteine desul	99.9
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	99.9
PLN02651	364	cysteine desulfurase	99.9
TIGR01814	406	kynureninase kynureninase. This model describes ky	99.9
PRK10874	401	cysteine sulfinate desulfinase; Provisional	99.89
PRK09295	406	bifunctional cysteine desulfurase/selenocysteine l	99.88
TIGR03392	398	FeS_syn_CsdA cysteine desulfurase, catalytic subun	99.88
PLN02855	424	Bifunctional selenocysteine lyase/cysteine desulfu	99.87
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	99.87
PRK03080	378	phosphoserine aminotransferase; Provisional	99.87
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	99.86
PLN02409	401	serine--glyoxylate aminotransaminase	99.85
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	99.85
TIGR03403	382	nifS_epsilon cysteine desulfurase, NifS family, ep	99.84
PLN02724	805	Molybdenum cofactor sulfurase	99.84
TIGR01976	397	am_tr_V_VC1184 cysteine desulfurase family protein	99.84
TIGR02326	363	transamin_PhnW 2-aminoethylphosphonate--pyruvate t	99.83
KOG1383	491	consensus Glutamate decarboxylase/sphingosine phos	99.83
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	99.82
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	99.82
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	99.8
TIGR03235	353	DNA_S_dndA cysteine desulfurase DndA. This model d	99.79
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	99.79
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.78
PRK13580	493	serine hydroxymethyltransferase; Provisional	99.78
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	99.78
TIGR01364	349	serC_1 phosphoserine aminotransferase. This model	99.78
PRK05355	360	3-phosphoserine/phosphohydroxythreonine aminotrans	99.78
PRK05367	954	glycine dehydrogenase; Provisional	99.78
TIGR01366	361	serC_3 phosphoserine aminotransferase, putative. T	99.78
TIGR03301	355	PhnW-AepZ 2-aminoethylphosphonate aminotransferase	99.77
PTZ00094	452	serine hydroxymethyltransferase; Provisional	99.77
PRK13479	368	2-aminoethylphosphonate--pyruvate transaminase; Pr	99.77
KOG1549	428	consensus Cysteine desulfurase NFS1 [Amino acid tr	99.76
COG2008	342	GLY1 Threonine aldolase [Amino acid transport and	99.76
PRK02948	381	cysteine desulfurase; Provisional	99.76
PRK04366	481	glycine dehydrogenase subunit 2; Validated	99.74
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	99.74
cd00611	355	PSAT_like Phosphoserine aminotransferase (PSAT) fa	99.74
PRK14012	404	cysteine desulfurase; Provisional	99.73
TIGR03531	444	selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr	99.72
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	99.69
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.67
PLN03226	475	serine hydroxymethyltransferase; Provisional	99.66
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	99.63
PRK07179	407	hypothetical protein; Provisional	99.61
PRK13034	416	serine hydroxymethyltransferase; Reviewed	99.61
PLN02452	365	phosphoserine transaminase	99.61
COG0156	388	BioF 7-keto-8-aminopelargonate synthetase and rela	99.61
KOG2862	385	consensus Alanine-glyoxylate aminotransferase AGT1	99.6
PRK00451	447	glycine dehydrogenase subunit 1; Validated	99.59
PLN02271	586	serine hydroxymethyltransferase	99.59
PRK05367	954	glycine dehydrogenase; Provisional	99.58
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.58
PLN02721	353	threonine aldolase	99.58
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	99.57
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	99.57
cd00609	350	AAT_like Aspartate aminotransferase family. This f	99.57
PRK12566	954	glycine dehydrogenase; Provisional	99.56
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	99.54
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	99.53
TIGR01365	374	serC_2 phosphoserine aminotransferase, Methanosarc	99.53
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	99.51
TIGR01437	363	selA_rel uncharacterized pyridoxal phosphate-depen	99.5
PRK09064	407	5-aminolevulinate synthase; Validated	99.5
PLN02509	464	cystathionine beta-lyase	99.47
PRK08861	388	cystathionine gamma-synthase; Provisional	99.46
PRK07582	366	cystathionine gamma-lyase; Validated	99.46
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	99.45
PRK09028	394	cystathionine beta-lyase; Provisional	99.44
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	99.44
PRK13392	410	5-aminolevulinate synthase; Provisional	99.44
PRK08114	395	cystathionine beta-lyase; Provisional	99.44
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	99.43
PLN02822	481	serine palmitoyltransferase	99.43
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	99.43
PRK06767	386	methionine gamma-lyase; Provisional	99.43
PRK13393	406	5-aminolevulinate synthase; Provisional	99.42
PRK08134	433	O-acetylhomoserine aminocarboxypropyltransferase;	99.42
PRK07269	364	cystathionine gamma-synthase; Reviewed	99.42
PRK05613	437	O-acetylhomoserine aminocarboxypropyltransferase;	99.41
TIGR01329	378	cysta_beta_ly_E cystathionine beta-lyase, eukaryot	99.41
PRK00011	416	glyA serine hydroxymethyltransferase; Reviewed	99.4
cd00378	402	SHMT Serine-glycine hydroxymethyltransferase (SHMT	99.4
PRK07504	398	O-succinylhomoserine sulfhydrylase; Reviewed	99.4
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	99.4
PRK07812	436	O-acetylhomoserine aminocarboxypropyltransferase;	99.39
PRK12462	364	phosphoserine aminotransferase; Provisional	99.38
PLN02483	489	serine palmitoyltransferase	99.38
KOG1359	417	consensus Glycine C-acetyltransferase/2-amino-3-ke	99.38
PRK08045	386	cystathionine gamma-synthase; Provisional	99.37
KOG1368	384	consensus Threonine aldolase [Amino acid transport	99.37
PRK07811	388	cystathionine gamma-synthase; Provisional	99.37
PLN02955	476	8-amino-7-oxononanoate synthase	99.36
COG1103	382	Archaea-specific pyridoxal phosphate-dependent enz	99.35
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	99.34
PRK08064	390	cystathionine beta-lyase; Provisional	99.34
cd00615	294	Orn_deC_like Ornithine decarboxylase family. This	99.34
PRK05994	427	O-acetylhomoserine aminocarboxypropyltransferase;	99.34
PRK08776	405	cystathionine gamma-synthase; Provisional	99.34
TIGR01328	391	met_gam_lyase methionine gamma-lyase. This model d	99.34
PRK06176	380	cystathionine gamma-synthase/cystathionine beta-ly	99.33
TIGR01325	380	O_suc_HS_sulf O-succinylhomoserine sulfhydrylase.	99.33
TIGR02080	382	O_succ_thio_ly O-succinylhomoserine (thiol)-lyase.	99.33
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	99.32
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	99.32
PRK08133	390	O-succinylhomoserine sulfhydrylase; Validated	99.31
PRK07671	377	cystathionine beta-lyase; Provisional	99.31
PRK05968	389	hypothetical protein; Provisional	99.31
KOG1360	570	consensus 5-aminolevulinate synthase [Coenzyme tra	99.31
cd01494	170	AAT_I Aspartate aminotransferase (AAT) superfamily	99.3
COG3844	407	Kynureninase [Amino acid transport and metabolism]	99.3
PRK08249	398	cystathionine gamma-synthase; Provisional	99.3
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	99.29
PRK06084	425	O-acetylhomoserine aminocarboxypropyltransferase;	99.29
PRK08574	385	cystathionine gamma-synthase; Provisional	99.29
PRK06460	376	hypothetical protein; Provisional	99.26
PRK08247	366	cystathionine gamma-synthase; Reviewed	99.26
PRK06434	384	cystathionine gamma-lyase; Validated	99.24
KOG0630	838	consensus Predicted pyridoxal-dependent decarboxyl	99.24
PRK05939	397	hypothetical protein; Provisional	99.2
PLN02242	418	methionine gamma-lyase	99.2
PF00464	399	SHMT: Serine hydroxymethyltransferase; InterPro: I	99.19
PRK07503	403	methionine gamma-lyase; Provisional	99.18
TIGR02618	450	tyr_phenol_ly tyrosine phenol-lyase. This model de	99.18
PRK07050	394	cystathionine beta-lyase; Provisional	99.17
COG0112	413	GlyA Glycine/serine hydroxymethyltransferase [Amin	99.16
PRK11658	379	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin	99.14
PRK05967	395	cystathionine beta-lyase; Provisional	99.14
PRK06234	400	methionine gamma-lyase; Provisional	99.13
PTZ00125	400	ornithine aminotransferase-like protein; Provision	99.13
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	99.13
TIGR01141	346	hisC histidinol-phosphate aminotransferase. Histid	99.13
TIGR01140	330	L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy	99.13
PRK03244	398	argD acetylornithine aminotransferase; Provisional	99.12
PRK13238	460	tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d	99.11
TIGR01326	418	OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d	99.11
TIGR03588	380	PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin	99.11
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	99.09
PRK08056	356	threonine-phosphate decarboxylase; Provisional	99.08
PRK08361	391	aspartate aminotransferase; Provisional	99.08
PF01212	290	Beta_elim_lyase: Beta-eliminating lyase; InterPro:	99.08
PF01276	417	OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain;	99.06
PRK06108	382	aspartate aminotransferase; Provisional	99.05
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	99.05
COG2873	426	MET17 O-acetylhomoserine sulfhydrylase [Amino acid	99.05
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.02
PRK13237	460	tyrosine phenol-lyase; Provisional	99.02
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	99.02
PRK05764	393	aspartate aminotransferase; Provisional	98.99
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	98.95
TIGR00474	454	selA seryl-tRNA(sec) selenium transferase. In bact	98.95
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	98.95
PRK06702	432	O-acetylhomoserine aminocarboxypropyltransferase;	98.94
PRK07908	349	hypothetical protein; Provisional	98.93
PRK10534	333	L-threonine aldolase; Provisional	98.93
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	98.91
PLN02624	474	ornithine-delta-aminotransferase	98.9
PF00155	363	Aminotran_1_2: Aminotransferase class I and II 1-a	98.88
PRK06358	354	threonine-phosphate decarboxylase; Provisional	98.88
TIGR02617	467	tnaA_trp_ase tryptophanase, leader peptide-associa	98.88
PRK05957	389	aspartate aminotransferase; Provisional	98.86
PRK06225	380	aspartate aminotransferase; Provisional	98.84
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	98.84
PRK04311	464	selenocysteine synthase; Provisional	98.84
KOG2467	477	consensus Glycine/serine hydroxymethyltransferase	98.83
PRK15029	755	arginine decarboxylase; Provisional	98.83
PRK07505	402	hypothetical protein; Provisional	98.82
TIGR01265	403	tyr_nico_aTase tyrosine/nicotianamine aminotransfe	98.81
PRK07324	373	transaminase; Validated	98.81
PRK07568	397	aspartate aminotransferase; Provisional	98.8
PRK00950	361	histidinol-phosphate aminotransferase; Validated	98.78
COG0626	396	MetC Cystathionine beta-lyases/cystathionine gamma	98.78
PRK04635	354	histidinol-phosphate aminotransferase; Provisional	98.78
PRK06207	405	aspartate aminotransferase; Provisional	98.77
PRK08363	398	alanine aminotransferase; Validated	98.77
PRK02731	367	histidinol-phosphate aminotransferase; Validated	98.75
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	98.75
KOG1357	519	consensus Serine palmitoyltransferase [Posttransla	98.75
COG0160	447	GabT 4-aminobutyrate aminotransferase and related	98.75
cd00617	431	Tnase_like Tryptophanase family (Tnase). This fami	98.74
PRK07049	427	methionine gamma-lyase; Validated	98.73
TIGR03540	383	DapC_direct LL-diaminopimelate aminotransferase. T	98.73
PRK14807	351	histidinol-phosphate aminotransferase; Provisional	98.72
PRK03715	395	argD acetylornithine transaminase protein; Provisi	98.69
PRK07309	391	aromatic amino acid aminotransferase; Validated	98.69
PRK06290	410	aspartate aminotransferase; Provisional	98.68
PRK07777	387	aminotransferase; Validated	98.68
PRK01688	351	histidinol-phosphate aminotransferase; Provisional	98.68
TIGR03539	357	DapC_actino succinyldiaminopimelate transaminase.	98.66
TIGR03537	350	DapC succinyldiaminopimelate transaminase. Note: t	98.66
PRK02936	377	argD acetylornithine aminotransferase; Provisional	98.66
PRK07681	399	aspartate aminotransferase; Provisional	98.65
PRK05387	353	histidinol-phosphate aminotransferase; Provisional	98.65
PRK07550	386	hypothetical protein; Provisional	98.65
PRK05942	394	aspartate aminotransferase; Provisional	98.64
PRK08912	387	hypothetical protein; Provisional	98.64
PRK15407	438	lipopolysaccharide biosynthesis protein RfbH; Prov	98.63
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	98.63
PF05889	389	SLA_LP_auto_ag: Soluble liver antigen/liver pancre	98.62
PRK04260	375	acetylornithine aminotransferase; Provisional	98.62
PRK09276	385	LL-diaminopimelate aminotransferase; Provisional	98.62
PRK07682	378	hypothetical protein; Validated	98.61
PRK11706	375	TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio	98.61
PRK07865	364	N-succinyldiaminopimelate aminotransferase; Review	98.6
PRK09082	386	methionine aminotransferase; Validated	98.59
TIGR02407	412	ectoine_ectB diaminobutyrate--2-oxoglutarate amino	98.59
PRK01278	389	argD acetylornithine transaminase protein; Provisi	98.58
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	98.58
PLN00145	430	tyrosine/nicotianamine aminotransferase; Provision	98.57
PF02347	429	GDC-P: Glycine cleavage system P-protein; InterPro	98.57
PLN02760	504	4-aminobutyrate:pyruvate transaminase	98.57
COG0399	374	WecE Predicted pyridoxal phosphate-dependent enzym	98.56
PRK13360	442	omega amino acid--pyruvate transaminase; Provision	98.56
PRK06425	332	histidinol-phosphate aminotransferase; Validated	98.56
PRK02627	396	acetylornithine aminotransferase; Provisional	98.56
PLN03026	380	histidinol-phosphate aminotransferase; Provisional	98.56
TIGR01264	401	tyr_amTase_E tyrosine aminotransferase, eukaryotic	98.55
PTZ00433	412	tyrosine aminotransferase; Provisional	98.54
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	98.54
PRK03158	359	histidinol-phosphate aminotransferase; Provisional	98.53
PRK08175	395	aminotransferase; Validated	98.53
PRK05769	441	4-aminobutyrate aminotransferase; Provisional	98.52
PLN00175	413	aminotransferase family protein; Provisional	98.52
PLN02376	496	1-aminocyclopropane-1-carboxylate synthase	98.52
PRK04781	364	histidinol-phosphate aminotransferase; Provisional	98.52
COG0436	393	Aspartate/tyrosine/aromatic aminotransferase [Amin	98.51
PRK09265	404	aminotransferase AlaT; Validated	98.51
TIGR02379	376	ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase	98.51
PRK09264	425	diaminobutyrate--2-oxoglutarate aminotransferase;	98.49
COG1932	365	SerC Phosphoserine aminotransferase [Coenzyme meta	98.48
PRK06541	460	hypothetical protein; Provisional	98.48
PTZ00377	481	alanine aminotransferase; Provisional	98.48
PRK04870	356	histidinol-phosphate aminotransferase; Provisional	98.47
TIGR03372	442	putres_am_tran putrescine aminotransferase. Member	98.46
PRK13578	720	ornithine decarboxylase; Provisional	98.46
PF01041	363	DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe	98.45
PLN02656	409	tyrosine transaminase	98.44
PRK09221	445	beta alanine--pyruvate transaminase; Provisional	98.44
KOG0053	409	consensus Cystathionine beta-lyases/cystathionine	98.44
PRK08068	389	transaminase; Reviewed	98.44
PRK12414	384	putative aminotransferase; Provisional	98.43
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	98.42
PRK08960	387	hypothetical protein; Provisional	98.41
PRK08360	443	4-aminobutyrate aminotransferase; Provisional	98.4
PRK05166	371	histidinol-phosphate aminotransferase; Provisional	98.4
PRK09148	405	aminotransferase; Validated	98.39
PRK08153	369	histidinol-phosphate aminotransferase; Provisional	98.39
PRK07337	388	aminotransferase; Validated	98.38
PRK06836	394	aspartate aminotransferase; Provisional	98.37
PRK06107	402	aspartate aminotransferase; Provisional	98.37
PLN02187	462	rooty/superroot1	98.36
PRK06058	443	4-aminobutyrate aminotransferase; Provisional	98.36
PRK13355	517	bifunctional HTH-domain containing protein/aminotr	98.36
PRK03321	352	putative aminotransferase; Provisional	98.34
PRK06348	384	aspartate aminotransferase; Provisional	98.33
PRK15400	714	lysine decarboxylase CadA; Provisional	98.33
PRK15399	713	lysine decarboxylase LdcC; Provisional	98.33
PRK15481	431	transcriptional regulatory protein PtsJ; Provision	98.32
TIGR00700	420	GABAtrnsam 4-aminobutyrate aminotransferase, proka	98.31
PRK07683	387	aminotransferase A; Validated	98.3
TIGR03251	431	LAT_fam L-lysine 6-transaminase. Characterized mem	98.29
PRK08593	445	4-aminobutyrate aminotransferase; Provisional	98.29
PRK09105	370	putative aminotransferase; Provisional	98.28
TIGR03542	402	DAPAT_plant LL-diaminopimelate aminotransferase. T	98.28
PLN00143	409	tyrosine/nicotianamine aminotransferase; Provision	98.28
COG1168	388	MalY Bifunctional PLP-dependent enzyme with beta-c	98.27
PRK04612	408	argD acetylornithine transaminase protein; Provisi	98.26
PRK08088	425	4-aminobutyrate aminotransferase; Validated	98.24
PRK07366	388	succinyldiaminopimelate transaminase; Validated	98.24
KOG1358	467	consensus Serine palmitoyltransferase [Posttransla	98.24
PRK06105	460	aminotransferase; Provisional	98.23
PRK07678	451	aminotransferase; Validated	98.23
PRK05639	457	4-aminobutyrate aminotransferase; Provisional	98.23
COG3033	471	TnaA Tryptophanase [Amino acid transport and metab	98.23
PLN02607	447	1-aminocyclopropane-1-carboxylate synthase	98.23
TIGR03538	393	DapC_gpp succinyldiaminopimelate transaminase. Thi	98.22
COG1003	496	GcvP Glycine cleavage system protein P (pyridoxal-	98.22
PRK06173	429	adenosylmethionine--8-amino-7-oxononanoate transam	98.22
TIGR00699	464	GABAtrns_euk 4-aminobutyrate aminotransferase, euk	98.21
PRK07036	466	hypothetical protein; Provisional	98.18
PRK07392	360	threonine-phosphate decarboxylase; Validated	98.17
PRK05965	459	hypothetical protein; Provisional	98.17
COG1921	395	SelA Selenocysteine synthase [seryl-tRNASer seleni	98.16
PRK06062	451	hypothetical protein; Provisional	98.16
PLN02450	468	1-aminocyclopropane-1-carboxylate synthase	98.16
KOG3846	465	consensus L-kynurenine hydrolase [Amino acid trans	98.16
PRK07590	409	L,L-diaminopimelate aminotransferase; Validated	98.16
PRK14808	335	histidinol-phosphate aminotransferase; Provisional	98.14
PRK08636	403	aspartate aminotransferase; Provisional	98.13
PRK07481	449	hypothetical protein; Provisional	98.12
PLN00144	382	acetylornithine transaminase	98.11
PRK06777	421	4-aminobutyrate aminotransferase; Provisional	98.11
COG4992	404	ArgD Ornithine/acetylornithine aminotransferase [A	98.1
PRK08297	443	L-lysine aminotransferase; Provisional	98.1
TIGR00508	427	bioA adenosylmethionine-8-amino-7-oxononanoate tra	98.1
PRK03317	368	histidinol-phosphate aminotransferase; Provisional	98.09
PRK05664	330	threonine-phosphate decarboxylase; Reviewed	98.09
PRK08354	311	putative aminotransferase; Provisional	98.07
PRK09440	416	avtA valine--pyruvate transaminase; Provisional	98.06
PRK07986	428	adenosylmethionine--8-amino-7-oxononanoate transam	98.06
PRK07495	425	4-aminobutyrate aminotransferase; Provisional	98.06
PRK09792	421	4-aminobutyrate transaminase; Provisional	98.04
PRK06082	459	4-aminobutyrate aminotransferase; Provisional	98.03
PRK00615	433	glutamate-1-semialdehyde aminotransferase; Provisi	98.03
TIGR00709	442	dat 2,4-diaminobutyrate 4-transaminases. This fami	98.02
PRK02610	374	histidinol-phosphate aminotransferase; Provisional	98.01
PRK06959	339	putative threonine-phosphate decarboxylase; Provis	98.01
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	98.0
PRK06149	972	hypothetical protein; Provisional	98.0
PRK12403	460	putative aminotransferase; Provisional	98.0
PRK07482	461	hypothetical protein; Provisional	97.97
PLN02231	534	alanine transaminase	97.96
PRK12389	428	glutamate-1-semialdehyde aminotransferase; Provisi	97.96
COG0403	450	GcvP Glycine cleavage system protein P (pyridoxal-	97.95
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	97.94
PLN02482	474	glutamate-1-semialdehyde 2,1-aminomutase	97.94
PRK06943	453	adenosylmethionine--8-amino-7-oxononanoate transam	97.91
PRK07030	466	adenosylmethionine--8-amino-7-oxononanoate transam	97.91
PRK06916	460	adenosylmethionine--8-amino-7-oxononanoate transam	97.9
PRK06938	464	diaminobutyrate--2-oxoglutarate aminotransferase;	97.9
COG1982	557	LdcC Arginine/lysine/ornithine decarboxylases [Ami	97.9
PRK06148	1013	hypothetical protein; Provisional	97.89
PRK09147	396	succinyldiaminopimelate transaminase; Provisional	97.89
PRK07480	456	putative aminotransferase; Validated	97.85
PRK06918	451	4-aminobutyrate aminotransferase; Reviewed	97.84
PRK06855	433	aminotransferase; Validated	97.82
PRK14809	357	histidinol-phosphate aminotransferase; Provisional	97.8
PRK05630	422	adenosylmethionine--8-amino-7-oxononanoate transam	97.8
COG0079	356	HisC Histidinol-phosphate/aromatic aminotransferas	97.79
PF00202	339	Aminotran_3: Aminotransferase class-III; InterPro:	97.76
PRK03967	337	histidinol-phosphate aminotransferase; Provisional	97.74
PRK06931	459	diaminobutyrate--2-oxoglutarate aminotransferase;	97.71
COG3977	417	Alanine-alpha-ketoisovalerate (or valine-pyruvate)	97.71
PRK12566	954	glycine dehydrogenase; Provisional	97.71
PRK08742	472	adenosylmethionine--8-amino-7-oxononanoate transam	97.71
PRK01533	366	histidinol-phosphate aminotransferase; Validated	97.64
PRK06917	447	hypothetical protein; Provisional	97.62
PRK07483	443	hypothetical protein; Provisional	97.59
PLN02368	407	alanine transaminase	97.59
PRK05839	374	hypothetical protein; Provisional	97.56
COG0001	432	HemL Glutamate-1-semialdehyde aminotransferase [Co	97.55
PLN02672	1082	methionine S-methyltransferase	97.49
PF03841	367	SelA: L-seryl-tRNA selenium transferase; InterPro:	97.49
PRK07046	453	aminotransferase; Validated	97.41
PRK04013	364	argD acetylornithine/acetyl-lysine aminotransferas	97.35
KOG1404	442	consensus Alanine-glyoxylate aminotransferase AGT2	97.34
KOG0256	471	consensus 1-aminocyclopropane-1-carboxylate syntha	97.34
PLN02397	423	aspartate transaminase	97.3
PTZ00376	404	aspartate aminotransferase; Provisional	97.29
PRK08637	388	hypothetical protein; Provisional	97.29
PRK06209	431	glutamate-1-semialdehyde 2,1-aminomutase; Provisio	97.24
COG1167	459	ARO8 Transcriptional regulators containing a DNA-b	97.24
PRK09257	396	aromatic amino acid aminotransferase; Provisional	97.2
KOG0259	447	consensus Tyrosine aminotransferase [Amino acid tr	97.19
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	97.13
KOG2040	1001	consensus Glycine dehydrogenase (decarboxylating)	97.12
KOG3843	432	consensus Predicted serine hydroxymethyltransferas	97.09
COG0161	449	BioA Adenosylmethionine-8-amino-7-oxononanoate ami	96.76
KOG0257	420	consensus Kynurenine aminotransferase, glutamine t	96.72
KOG1402	427	consensus Ornithine aminotransferase [Amino acid t	96.52
KOG2790	370	consensus Phosphoserine aminotransferase [Coenzyme	96.33
KOG1405	484	consensus 4-aminobutyrate aminotransferase [Amino	95.97
KOG0634	472	consensus Aromatic amino acid aminotransferase and	95.8
KOG0633	375	consensus Histidinol phosphate aminotransferase [A	95.22
TIGR03801	521	asp_4_decarbox aspartate 4-decarboxylase. This enz	94.56
PRK09275	527	aspartate aminotransferase; Provisional	93.64
COG1448	396	TyrB Aspartate/tyrosine/aromatic aminotransferase	91.87
PF06838	403	Met_gamma_lyase: Methionine gamma-lyase ; InterPro	91.1
KOG1401	433	consensus Acetylornithine aminotransferase [Amino	89.66
cd01455	191	vWA_F11C1-5a_type Von Willebrand factor type A (vW	87.12

>PLN02590 probable tyrosine decarboxylase

Probab=100.00  E-value=5.7e-52  Score=368.63  Aligned_cols=224  Identities=58%  Similarity=1.078  Sum_probs=203.5

Q ss_pred             CCCccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438            1 AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC   80 (239)
Q Consensus         1 ~g~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~   80 (239)
                      +|+.|++||+|+|||.+|++|||++|+++|++||+|+|||||+|+.++++++++.++.+++.|||+++|+||||++|++|
T Consensus       284 ~g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~~~~g~WlHVDaA~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p~~c  363 (539)
T PLN02590        284 KGFIPFFICATVGTTSSAAVDPLVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQTC  363 (539)
T ss_pred             cCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCeEEEecchhhhhhcChhhHHHhcCCccCCEEEECchhhcCcCcCE
Confidence            58899999999999999999999999999999999999999999999999999988999999999999999999999999


Q ss_pred             eEEEeeCc-----------ccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Q 048438           81 CCLWATNP-----------EYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERL  149 (239)
Q Consensus        81 g~l~~~~~-----------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~  149 (239)
                      |+++++++           +|+..........+++.+|+++++||++++++|.+|+.+|.+|+++++++..+++++|.+.
T Consensus       364 g~llvr~~~~l~~a~~~~~~YL~~~~~~~~~~~d~~d~~i~lsRr~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~  443 (539)
T PLN02590        364 SPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDY  443 (539)
T ss_pred             EEEEecCHHHHHHHhhcCHHHhCCcccccccCCCccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999864           3443222112234667889999999999999999999999999999999999999999999


Q ss_pred             HhCCCCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEE
Q 048438          150 VSGDKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFA  229 (239)
Q Consensus       150 l~~~~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~  229 (239)
                      |++.++|+++.++.+++|||++.+..               .+.++.|++|+++.++|+++|.++++++.++|+.+||++
T Consensus       444 l~~~~~fel~~~~~l~iVcFr~~~~~---------------~~~~~~~~ln~~l~~~l~~~G~~~vs~t~~~g~~~lR~~  508 (539)
T PLN02590        444 VAQDPSFEVVTTRYFSLVCFRLAPVD---------------GDEDQCNERNRELLAAVNSTGKIFISHTALSGKFVLRFA  508 (539)
T ss_pred             HhcCCCeEEecCCceEEEEEEecCCC---------------CCHHHHHHHHHHHHHHHHhCCCEEEEeeEECCEEEEEEE
Confidence            99999999999999999999998743               234567899999999999999999999999999999999


Q ss_pred             ecCCCCCcCC
Q 048438          230 TGATLTEERH  239 (239)
Q Consensus       230 ~~~~~t~~~~  239 (239)
                      ++||.|+++|
T Consensus       509 i~n~~T~~~d  518 (539)
T PLN02590        509 VGAPLTEEKH  518 (539)
T ss_pred             ecCCCCCHHH
Confidence            9999999876

>PLN02880 tyrosine decarboxylase

Probab=100.00  E-value=1.3e-49  Score=352.84  Aligned_cols=224  Identities=59%  Similarity=1.094  Sum_probs=200.8

Q ss_pred             CCCccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438            1 AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC   80 (239)
Q Consensus         1 ~g~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~   80 (239)
                      +|++|++||+|+|||.+|++|||++|+++|++||+|+|||||||++++..++++..+.++++|||+++|+||||++|++|
T Consensus       236 ~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~~iwlHVDaA~gg~~~~~~~~~~~l~gie~aDSit~d~HKwl~~P~~~  315 (490)
T PLN02880        236 SGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWFHVDAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTNFDC  315 (490)
T ss_pred             CCCccEEEEEecCCCcCcccCcHHHHHHHHHHcCCEEEEehhhHHHHHhCHHHHHHhcCchhcCEEEECchhhcCCCccE
Confidence            58999999999999999999999999999999999999999999999988888888889888999999999999999999


Q ss_pred             eEEEeeCcc-----------cccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Q 048438           81 CCLWATNPE-----------YLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERL  149 (239)
Q Consensus        81 g~l~~~~~~-----------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~  149 (239)
                      |+++++++.           |+...........++..|+++.|||++++++|..++.+|.+++++++++..++++++.+.
T Consensus       316 g~llvr~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~~i~~~rr~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~  395 (490)
T PLN02880        316 SLLWVKDRNALIQSLSTNPEFLKNKASQANSVVDYKDWQIPLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQL  395 (490)
T ss_pred             EEEEEeCHHHHHHHHccCHHHhcCccccccCCCChhccCcCCCCcccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence            999998642           333221111234566778899999999999999999999999999999999999999999


Q ss_pred             HhCCCCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEE
Q 048438          150 VSGDKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFA  229 (239)
Q Consensus       150 l~~~~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~  229 (239)
                      |++.++++++.++.+++|||++++..               .+.+..|++|+++.++|+++|.++++.+.++|+.++|++
T Consensus       396 l~~~~~~el~~~~~~~iv~Fr~~~~~---------------~~~~~~~~~n~~l~~~l~~~g~~~v~~t~~~g~~~lR~~  460 (490)
T PLN02880        396 VAQDSRFEVVTPRIFSLVCFRLVPPK---------------NNEDNGNKLNHDLLDAVNSSGKIFISHTVLSGKYVLRFA  460 (490)
T ss_pred             HhcCCCEEEecCCceEEEEEEEeCCC---------------CChhhHHHHHHHHHHHHHhCCCEEEEEEEECCEEEEEEE
Confidence            99999999999999999999998743               244567899999999999999999999999999999999


Q ss_pred             ecCCCCCcCC
Q 048438          230 TGATLTEERH  239 (239)
Q Consensus       230 ~~~~~t~~~~  239 (239)
                      ++||+|+++|
T Consensus       461 ~~n~~tt~~d  470 (490)
T PLN02880        461 VGAPLTEERH  470 (490)
T ss_pred             ecCCCCCHHH
Confidence            9999999765

>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase

Probab=100.00  E-value=1.5e-45  Score=327.80  Aligned_cols=238  Identities=21%  Similarity=0.362  Sum_probs=198.0

Q ss_pred             CCCccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438            1 AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC   80 (239)
Q Consensus         1 ~g~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~   80 (239)
                      +|..|++|++++|||++|++|||++|+++|+++|+|+||||||+++.++.++++..+.+++++||+++|+|||+++|+||
T Consensus       262 ~g~~~~~vvataGtt~tGaiDpl~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P~g~  341 (522)
T TIGR03799       262 QNIKPLAIVGVAGTTETGNIDPLDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVPMGA  341 (522)
T ss_pred             CCCCcEEEEEEecCcCCCCcCCHHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCcCccc
Confidence            36789999999999999999999999999999999999999999998888888887888878999999999999999999


Q ss_pred             eEEEeeCcccccccccC-----CCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 048438           81 CCLWATNPEYLKNKATE-----SKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKR  155 (239)
Q Consensus        81 g~l~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g  155 (239)
                      |+++++++..+......     .....++.+++++++|++.++++|.+++.+|.+|+++++++..+++++|.+.|++.|+
T Consensus       342 G~llvr~~~~~~~~~~~~~Yl~~~~~~d~~~~~legsR~~~al~lw~aL~~lG~~G~~~ii~~~~~la~~l~~~L~~~~~  421 (522)
T TIGR03799       342 GMVLFKDPALMSAIEHHAEYILRKGSKDLGSHTLEGSRPGMAMLVYAGLHIIGRKGYELLIDQSIEKAKYFADLIQQQPD  421 (522)
T ss_pred             EEEEEeCHHHHHHhccCcchhcCCCCCccccceeecCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence            99999876443222111     0112345568899999999999999999999999999999999999999999999999


Q ss_pred             eEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEEC-------CEeEEEE
Q 048438          156 FEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLG-------GIYAIRF  228 (239)
Q Consensus       156 ~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~-------g~~~lR~  228 (239)
                      |+++.++.+++|||++.|........ ...+.......+..|++|++++++++++|..|++.+..+       +..++|+
T Consensus       422 ~el~~~p~l~iv~Fr~~p~~~~~~l~-~~~~~~~~~~~~~~~~ln~~i~~~~~~~G~~~vs~t~l~~~~~~g~~~~~lR~  500 (522)
T TIGR03799       422 FELVTEPELCLLTYRYVPEEVQQALA-KADEEQREKINELLDRLTKFIQKRQREAGKSFVSRTRLTPAQYDHQPTVVFRV  500 (522)
T ss_pred             eEEecCCCccEEEEEEeChhhccccc-ccchhhhhhHHHHHHHHHHHHHHHHHhcCCEEEEEEEecccccCCCCcEEEEE
Confidence            99999999999999998754321000 000011112235579999999999999999999998876       4589999


Q ss_pred             EecCCCCCcCC
Q 048438          229 ATGATLTEERH  239 (239)
Q Consensus       229 ~~~~~~t~~~~  239 (239)
                      +++||.|+++|
T Consensus       501 ~~~np~tt~~~  511 (522)
T TIGR03799       501 VLANPLTTHEI  511 (522)
T ss_pred             EecCCCCCHHH
Confidence            99999999875

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).

>KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism]

Probab=100.00  E-value=8.7e-45  Score=305.13  Aligned_cols=215  Identities=49%  Similarity=0.899  Sum_probs=201.4

Q ss_pred             CCCccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438            1 AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC   80 (239)
Q Consensus         1 ~g~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~   80 (239)
                      +|++||+|++|.|||.++++|+|.+|..+|+++|+|+||||||+|.+..+++++.+.+|++.|||+.+++|||+.+-..|
T Consensus       232 rGlIPf~v~at~GTT~~ca~D~l~elg~Vc~~~glWLHVDAAYAGsa~iCpE~r~l~rGie~aDSfn~n~hK~~~vnfDC  311 (511)
T KOG0628|consen  232 RGLIPFFVCATLGTTSSCAFDELEELGPVCREEGLWLHVDAAYAGSAFICPEFRYLMRGIEYADSFNFNPHKWLLVNFDC  311 (511)
T ss_pred             CCCccEEEEEeecCccccccccHHHhcchhhhcCEEEEeehhhccccccCHHHHHHhhcchhhccccCChhheeEEeeee
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEeeCcc-----------cccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Q 048438           81 CCLWATNPE-----------YLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERL  149 (239)
Q Consensus        81 g~l~~~~~~-----------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~  149 (239)
                      +.+|+++..           ||.....  ....|+..|+++.+|||+++++|..++.+|.++++++++++.+|++.+.+.
T Consensus       312 s~lWvkd~~~~~~~~~vdp~yL~h~~~--~~~~Dyrhwqipl~rRfRSLKlWfv~R~~Gve~lq~~iR~h~~La~~fe~l  389 (511)
T KOG0628|consen  312 SPLWVKDGTKLSRAFNVDPLYLKHAYQ--GSAPDYRHWQIPLGRRFRSLKLWFVLRSYGVENLQNYIREHVRLAKEFETL  389 (511)
T ss_pred             ecceeecCceeeeeeecChHhhcchhh--ccCCCccccccccccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            999998753           3333322  236778899999999999999999999999999999999999999999999


Q ss_pred             HhCCCCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEE
Q 048438          150 VSGDKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFA  229 (239)
Q Consensus       150 l~~~~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~  229 (239)
                      +.+.+.||+..+...++||||+++.                      |++|++++++++.+|++++.+..+.|+.+||++
T Consensus       390 v~~d~~FE~~~~~~lgLvcFRlk~~----------------------N~~ne~Ll~~in~~g~i~l~~~~l~gk~vlRf~  447 (511)
T KOG0628|consen  390 VRADPRFEIVNKRILGLVCFRLKGD----------------------NEINEALLNRLNSSGRIHLVPASLHGKFVLRFA  447 (511)
T ss_pred             hhcCCcceeecccccceeEEeecCC----------------------cHHHHHHHHHHHhcCcEEEEEeeecceEEEEEE
Confidence            9999999999999999999999885                      799999999999999999999999999999999


Q ss_pred             ecCCCCCcCC
Q 048438          230 TGATLTEERH  239 (239)
Q Consensus       230 ~~~~~t~~~~  239 (239)
                      ++++.|+++|
T Consensus       448 V~s~~t~~~d  457 (511)
T KOG0628|consen  448 VCSPLTNESD  457 (511)
T ss_pred             ecCCCCcHHH
Confidence            9999999876

>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=100.00  E-value=1.5e-39  Score=279.99  Aligned_cols=172  Identities=38%  Similarity=0.723  Sum_probs=149.2

Q ss_pred             CCCccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438            1 AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC   80 (239)
Q Consensus         1 ~g~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~   80 (239)
                      +|++|++|++|+|||.+|++|||++|+++|+++++|+|||||+|+.++..++.+....+++++||+++|+||||++|++|
T Consensus       191 ~g~~p~~vvat~Gtt~~Ga~D~l~~i~~i~~~~~~wlHVDaA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P~~~  270 (373)
T PF00282_consen  191 NGKTPFAVVATAGTTNTGAIDPLEEIADICEKYNIWLHVDAAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGVPYGC  270 (373)
T ss_dssp             TTEEEEEEEEEBS-TTTSBB-SHHHHHHHHHHCT-EEEEEETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-SSS-
T ss_pred             ccccceeeeccCCCcccccccCHHHHhhhccccceeeeecccccccccccccccccccccccccccccchhhhhcCCccc
Confidence            47899999999999999999999999999999999999999999988888888888999999999999999999999999


Q ss_pred             eEEEeeCccccccccc-----------CCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Q 048438           81 CCLWATNPEYLKNKAT-----------ESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERL  149 (239)
Q Consensus        81 g~l~~~~~~~l~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~  149 (239)
                      |+++++++..+.....           ......++.+++++++|+++++++|..++.+|.+|+++++++..+++++|.+.
T Consensus       271 ~~~l~r~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~tl~~SR~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~  350 (373)
T PF00282_consen  271 GVLLVRDKSDLRDAFSINADYLGNDDRESDESYDYGDYTLQGSRRFRALKLWATLKSLGREGYRERIRRCIELARYLADR  350 (373)
T ss_dssp             EEEEESSGGGHHGGGEEEETCTT-S-SSS-GGGCEEEGSSSSSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeEEeecccchHHHhccChhhhcccccccccccccccccccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999988654432221           11112345567889999999999999999999999999999999999999999


Q ss_pred             HhCCCCeEEEcCCCeeEEEEEEc
Q 048438          150 VSGDKRFEVVFPCHFAVVCFRVS  172 (239)
Q Consensus       150 l~~~~g~~~~~~~~~~iv~f~~~  172 (239)
                      |++.++++++.++.+++|||+++
T Consensus       351 l~~~~~~el~~~~~~~~vcFr~k  373 (373)
T PF00282_consen  351 LRKDPRFELVNEPDLNIVCFRYK  373 (373)
T ss_dssp             HHTSTTEEESSTTSSSEEEEEES
T ss_pred             HHhCCCEEEEcCCCceEEEEEeC
Confidence            99999999999999999999985

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....

>KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism]

Probab=100.00  E-value=3.3e-38  Score=263.06  Aligned_cols=231  Identities=24%  Similarity=0.383  Sum_probs=197.2

Q ss_pred             CCCccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438            1 AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC   80 (239)
Q Consensus         1 ~g~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~   80 (239)
                      .|..||+|.+|+|||+.|++|||..|+++|++|++|+|||||+|+|.+....+|..+.+++++||+++++||++++|..|
T Consensus       250 kg~~Pf~vnaTaGTTV~GAFDdL~~iadiC~k~~lWmHvDAAwGGglLmS~k~R~kl~Giera~SvtwnpHK~~gaplqC  329 (510)
T KOG0629|consen  250 KGGVPFFVNATAGTTVLGAFDDLNGIADICEKHKLWMHVDAAWGGGLLMSRKHRHKLTGIERANSVTWNPHKLMGAPLQC  329 (510)
T ss_pred             cCCCCeEEEecCCceeeeccCcHHHHHHHHHhcCEEEEeecccccccccChhhHhhccCccccCceeecHHHhhcCcchh
Confidence            47889999999999999999999999999999999999999999999988888888999999999999999999999999


Q ss_pred             eEEEeeCc-----------ccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Q 048438           81 CCLWATNP-----------EYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERL  149 (239)
Q Consensus        81 g~l~~~~~-----------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~  149 (239)
                      +.++++..           .|+.+....+..++|..+...++||+...+++|..++.-|.+|+++.++++.++|+||.++
T Consensus       330 sa~l~r~~gll~~Cn~~~A~YLFq~dK~YdvS~DTgdK~iQCGRh~D~FKlWlmwkaKG~~Gfe~~v~k~~~lA~yl~~~  409 (510)
T KOG0629|consen  330 SAFLTREEGLLQRCNQMSAIYLFQQDKFYDVSYDTGDKAIQCGRHVDVFKLWLMWKAKGTQGFEAQVDKCLRLAEYLYDR  409 (510)
T ss_pred             hHHHHHHHHHHHhhcccchhhhhccCceeecccccccchhhcCccccHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHH
Confidence            99998643           4555544444455667788999999999999999999999999999999999999999999


Q ss_pred             HhCCCCeEEEcC--CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECC-EeEE
Q 048438          150 VSGDKRFEVVFP--CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGG-IYAI  226 (239)
Q Consensus       150 l~~~~g~~~~~~--~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g-~~~l  226 (239)
                      |++.++++.+..  |+.-.|||++.|+.++.       -+..++-.+...++...+.+++.++|..+++++.... ..++
T Consensus       410 lrer~~~~~l~~~~pe~~nv~fw~vp~~lR~-------~~~~~e~~~rL~kVaPkIK~~Mm~~Gt~Mi~YqPl~~~~nff  482 (510)
T KOG0629|consen  410 LREREGFEMLFELEPEHVNVCFWYVPPSLRG-------WQENPERDSRLVKVAPKIKERMMKKGTTMIGYQPLGDKPNFF  482 (510)
T ss_pred             HHhcccceehhcCCCceEEEeeccCchHhcc-------CcccchhhhHHHhhCcHHHHHHHhccceeeEecccccccchh
Confidence            999989887654  67678899998865432       1223344566677778899999999999999988754 4689


Q ss_pred             EEEecCCCCCcC
Q 048438          227 RFATGATLTEER  238 (239)
Q Consensus       227 R~~~~~~~t~~~  238 (239)
                      |+++.|+..++.
T Consensus       483 r~v~sn~a~~~a  494 (510)
T KOG0629|consen  483 RMVISNPALTEA  494 (510)
T ss_pred             heecccchhhhh
Confidence            999999965543

>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type

Probab=100.00  E-value=7.3e-36  Score=268.14  Aligned_cols=222  Identities=16%  Similarity=0.253  Sum_probs=175.4

Q ss_pred             CCCccEEEEEecCCCCcccccChhHHHHHH---HHhCC--EEEEeccccccc--ccCc----------------------
Q 048438            1 AGLIPLFLCATIGTTAITAVDPLKPLCDVA---KQFGI--WVHVDAAYAGSA--CIFP----------------------   51 (239)
Q Consensus         1 ~g~~p~~vv~t~gtt~~G~i~pl~~i~~i~---~~~gi--~lhvD~A~~~~~--~~~~----------------------   51 (239)
                      +|..|++||+|+|||.+|++|||++|+++|   +++|+  |+|||||+|+.+  +.++                      
T Consensus       275 ~g~p~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~  354 (608)
T TIGR03811       275 EKTPILGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEYGVFT  354 (608)
T ss_pred             cCCCeEEEEEEcCCcCCcccCCHHHHHHHHHHHHHcCCceeEeeeccccchhhhhhccccccccccchhhcccccccccc
Confidence            477889999999999999999999999999   67898  699999999864  2222                      


Q ss_pred             --------ccccccCCCCCcceEEEcCcccCCCcccceEEEeeCcc----------cccccccCCCCccCCCCceecCCC
Q 048438           52 --------EFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWATNPE----------YLKNKATESKPVVDYKDWQITLSR  113 (239)
Q Consensus        52 --------~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~----------~l~~~~~~~~~~~~~~~~~~~~~~  113 (239)
                              +.+..++++++|||+++|+|||++.|++||++++|++.          |+......  .......++++++|
T Consensus       355 ~~~~~l~~~~~~~l~gle~ADSItvDpHK~g~~Py~~G~ll~Rd~~~~~~~~~~a~Yl~~~~~~--~p~~~g~~~legSR  432 (608)
T TIGR03811       355 EKKEYISREVYNAYKAISEAESVTIDPHKMGYIPYSAGGIVIQDIRMRDVISYFATYVFEKGAD--IPALLGAYILEGSK  432 (608)
T ss_pred             cccccccHhHHHHHhcCcCceEEEeCcccccccCCCeEEEEEeCHHHHHHHhcCcchhcccccc--CcccccccceecCC
Confidence                    33445678899999999999999999999999998763          22211100  00123446777777


Q ss_pred             C-CChHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHhC------CCCeEE--EcCCCeeEEEEEEcCCCcchhhhh
Q 048438          114 S-FRSLKLWFVIRNY--GMENLRHFLRSHVNMARLFERLVSG------DKRFEV--VFPCHFAVVCFRVSPLPVLMDKLK  182 (239)
Q Consensus       114 ~-~~~~~~~~~l~~~--g~~g~~~~~~~~~~la~~l~~~l~~------~~g~~~--~~~~~~~iv~f~~~~~~~~~~~~~  182 (239)
                      + ++++++|.+++.+  |.+|+++++++..++++++.+.|++      .+.+++  +.+|++|||||++.+.+.      
T Consensus       433 ~ga~AlklW~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~~L~~~~~~~~~~~~el~~~~~pdlniV~Fr~~~~g~------  506 (608)
T TIGR03811       433 AGATAASVWAAHKVLPLNVTGYGKLIGASIEGAHRFYDFLNNLEFKVGDKEIEVHPLTKPDFNMVDYVFNEKGN------  506 (608)
T ss_pred             ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCeeEEecCCCCcceEEEEEecCCC------
Confidence            5 6799999999998  9999999999999999999999988      456776  778999999999987653      


Q ss_pred             hhhcccccccHHHHHHHHHHHHHHHH------hcCcEEEEEEEEC--------------------------CEeEEEEEe
Q 048438          183 TKYENCLLSEEEQINEFNRELLESIN------ASGKAYMTNVVLG--------------------------GIYAIRFAT  230 (239)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~l~~~l~------~~g~~~~~~~~~~--------------------------g~~~lR~~~  230 (239)
                              .+.+..|++|+++.+++.      .+..++++.|.+.                          +..+||.++
T Consensus       507 --------~~l~~~n~ln~~i~~~~~~~~g~~~~~~~~~s~t~~~~~~yg~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~  578 (608)
T TIGR03811       507 --------DDLVKMNKLNHAFYDYASYVKGSIYNNEFITSHTDFAIPDYGDSPFAFVNSLGFSDEEWQRAGKVTILRASV  578 (608)
T ss_pred             --------ccHHHHHHHHHHHHHhhccccCCCCCcceEeeecccccchhhhhHHHHHHHcCCChhhhccCCceEEEEEEe
Confidence                    345778999999999886      2344566666542                          237999999


Q ss_pred             cCCCCCcC
Q 048438          231 GATLTEER  238 (239)
Q Consensus       231 ~~~~t~~~  238 (239)
                      |+|...++
T Consensus       579 m~p~~~~~  586 (608)
T TIGR03811       579 MTPYMNDK  586 (608)
T ss_pred             cCcccCCh
Confidence            99988764

This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.

>TIGR01788 Glu-decarb-GAD glutamate decarboxylase

Probab=100.00  E-value=1.4e-35  Score=259.17  Aligned_cols=213  Identities=16%  Similarity=0.214  Sum_probs=168.6

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHh------CCEEEEecccccccccCc--ccccccCCCCCcceEEEcCcccCC
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQF------GIWVHVDAAYAGSACIFP--EFRHFIDGVEGADSFSLNAHKWFF   75 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~------gi~lhvD~A~~~~~~~~~--~~~~~~~~~~~~Ds~~~~~hK~l~   75 (239)
                      .|++|++++|||++|++|||++|+++|+++      |+|+||||||+++++++.  +.+..+. ++++||+++|+|||++
T Consensus       186 ~t~lV~~t~g~t~tG~idpi~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~-~~~~DSis~s~HK~~~  264 (431)
T TIGR01788       186 NTIGVVCILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFR-LPRVKSINVSGHKYGL  264 (431)
T ss_pred             CCeEEEEEeCCCCCcccCCHHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcC-CCCceEEEECchhccC
Confidence            378999999999999999999999999999      999999999998887653  2222233 5679999999999999


Q ss_pred             CcccceEEEeeCcccccccccCCCCccC--CCCceecCCCCC-ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhC
Q 048438           76 ATLDCCCLWATNPEYLKNKATESKPVVD--YKDWQITLSRSF-RSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSG  152 (239)
Q Consensus        76 ~P~g~g~l~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~  152 (239)
                      +|+|+|+++++++..+.+.......+..  ...++++++|++ ++++.|..++.+|.+|+++++++..++++++.++|++
T Consensus       265 ~P~g~G~l~~r~~~~l~~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~  344 (431)
T TIGR01788       265 VYPGVGWVIWRDEEALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAK  344 (431)
T ss_pred             CCCCcEEEEEeChHHcchhheecccccCCCCCCcceecCchHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999876433222111111111  123567788885 7799999999999999999999999999999999999


Q ss_pred             CCCeEEEcC-CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEE---EEEEEECCEeEEEE
Q 048438          153 DKRFEVVFP-CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAY---MTNVVLGGIYAIRF  228 (239)
Q Consensus       153 ~~g~~~~~~-~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~---~~~~~~~g~~~lR~  228 (239)
                      .++|+++.+ +.+++|||++++.+.               .    +..+..+.++|.++|..+   .+++.++|+.++|+
T Consensus       345 ~~~~el~~~~~~~~iV~Fr~~~~~~---------------~----~~~~~~l~~~L~~~G~~~~~~~~p~~~~~~~~lR~  405 (431)
T TIGR01788       345 LGPFEIISDGSGIPLVAFKLKDDAD---------------P----GYTLYDLSHRLRERGWIVPAYTLPKNAEDIVVMRI  405 (431)
T ss_pred             CCCEEEeeCCCCceEEEEEeCCCCC---------------C----CcCHHHHHHHHHHCCCcccCCCCCCccCCeEEEEE
Confidence            999999987 799999999986320               0    112457888888898874   55555889999999


Q ss_pred             EecCCCCC
Q 048438          229 ATGATLTE  236 (239)
Q Consensus       229 ~~~~~~t~  236 (239)
                      +++++.+.
T Consensus       406 ~~~~~~~~  413 (431)
T TIGR01788       406 VVREGFSR  413 (431)
T ss_pred             EecCCCCH
Confidence            98766654

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).

>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

Probab=100.00  E-value=1.6e-35  Score=259.48  Aligned_cols=221  Identities=25%  Similarity=0.390  Sum_probs=180.5

Q ss_pred             EEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccc-cCCCCCcceEEEcCcccCCCcccceEEEe
Q 048438            7 FLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF-IDGVEGADSFSLNAHKWFFATLDCCCLWA   85 (239)
Q Consensus         7 ~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~-~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~   85 (239)
                      +||+++|||.+|.+|||++|+++|+++++|+|||||+|+..+++.+.+.. ..++++||||++|+|||+++|+|||++++
T Consensus       210 ~vV~~aGtT~~G~iDdi~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~~~f~l~~vdSIt~d~HK~g~aP~~~G~il~  289 (460)
T COG0076         210 VVVGTAGTTDTGSIDDIEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGCGVVLF  289 (460)
T ss_pred             eEEEEecCCCCCccCCHHHHHHHHHHcCCcEEEEccccceeecccCccchhhcCCCCceEEEECcccccCCCCCceEEEE
Confidence            59999999999999999999999999999999999999999999877765 68888999999999999999999999999


Q ss_pred             eCcccccccccCCCCcc---CCCCceecCCCCC-ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcC
Q 048438           86 TNPEYLKNKATESKPVV---DYKDWQITLSRSF-RSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFP  161 (239)
Q Consensus        86 ~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~  161 (239)
                      ++++.+.........+.   +...+++.++|.. .+++.|..++.+|.+|+++.+++..++++++.+.|++.+.++++++
T Consensus       290 rd~e~l~~~~~~~~~yl~~~~~~~~ti~~sr~~~~~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~~~~~~e~~~~  369 (460)
T COG0076         290 RDEEALRRILIFADYYLPGGGIPNFTILGSRPGRQALALYANLRRLGREGYRKLLDRTLELARYLAEELEKLGDFELVNE  369 (460)
T ss_pred             ECHHHhhhhhhcccccCCCCCcCceeEeeccchHHHHHHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHhCCCcEeecC
Confidence            99854433322111111   2234566666664 7899999999999999999999999999999999999877999999


Q ss_pred             CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCCcC
Q 048438          162 CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTEER  238 (239)
Q Consensus       162 ~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~  238 (239)
                      |.+|+|+|++++...           ......+..+..+..+..++..++..++..+.+.++.++++...++.+..+
T Consensus       370 p~l~~V~fr~~~~~~-----------~~~~~~~~~~~~gw~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  435 (460)
T COG0076         370 PELPIVAFRLKDDED-----------TLADLSERLDRRGWQVPAQLLPKGLAIVFGTHVTGRQGLKFIVANLLITDR  435 (460)
T ss_pred             CccceEEEEcCCccc-----------chhchHHHHHhcCceeecccCCccceeeeeeEEeeeeeehhhcchhhhhhh
Confidence            999999999965310           011334555566667777777778888888888889999999888776543

>PLN02263 serine decarboxylase

Probab=100.00  E-value=1.3e-32  Score=239.77  Aligned_cols=169  Identities=18%  Similarity=0.226  Sum_probs=140.2

Q ss_pred             CCccEEEEEecCCCCcccccChhHHHHHHHHhCC-----EEEEecccccccccCcccccccCCCCCcceEEEcCcccCCC
Q 048438            2 GLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGI-----WVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFA   76 (239)
Q Consensus         2 g~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi-----~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~   76 (239)
                      +.+|++|++|+|||.+|++|||++|+++|+++|+     |+|||||+||..+++.+....+.....+||+++|+|||+++
T Consensus       226 ~~~P~iVvataGTT~~GAiDpi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~~~~~df~~~vDSIsvD~HK~l~~  305 (470)
T PLN02263        226 KDKPAIINVNIGTTVKGAVDDLDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKRAPKVTFKKPIGSVSVSGHKFVGC  305 (470)
T ss_pred             CCCcEEEEEEecCCCCcCCCCHHHHHHHHHHcCCccCCeeEEEeccchhhHhhhcccccccCCCcCccEEEECCccccCC
Confidence            3469999999999999999999999999999997     99999999999887644333344445699999999999999


Q ss_pred             cccceEEEeeCcccccccccCCCCccCCCCceecCCCCC-ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 048438           77 TLDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSF-RSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKR  155 (239)
Q Consensus        77 P~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g  155 (239)
                      |++||+++++++ ++.... ....++...+.++.++|++ .++++|..++.+|.+|++++++++.++++++.+.|++. |
T Consensus       306 P~~cgvll~R~~-~~~~~~-~~~~Yl~~~d~ti~gSR~g~~al~lW~~L~~~G~~G~~~~i~~~~~~A~~l~~~l~~~-g  382 (470)
T PLN02263        306 PMPCGVQITRME-HINVLS-SNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQKCLRNAHYLKDRLREA-G  382 (470)
T ss_pred             CcCEEEEEEehh-hHhhhc-cChHhhCCCCCCcCCCCCcHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC-C
Confidence            999999999863 332111 1112333345678889996 58999999999999999999999999999999999997 8


Q ss_pred             eEEEcCCCeeEEEEEEcC
Q 048438          156 FEVVFPCHFAVVCFRVSP  173 (239)
Q Consensus       156 ~~~~~~~~~~iv~f~~~~  173 (239)
                      ++++.+|.+++|+|+-+.
T Consensus       383 ~~~~~~p~s~~V~f~~p~  400 (470)
T PLN02263        383 ISAMLNELSSTVVFERPK  400 (470)
T ss_pred             CeEEeCCCceEEEEecCc
Confidence            888888899999998543

>PRK02769 histidine decarboxylase; Provisional

Probab=100.00  E-value=6.6e-32  Score=233.01  Aligned_cols=169  Identities=24%  Similarity=0.370  Sum_probs=140.4

Q ss_pred             CCccEEEEEecCCCCcccccChhHHHHHHHHhC---CEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcc
Q 048438            2 GLIPLFLCATIGTTAITAVDPLKPLCDVAKQFG---IWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATL   78 (239)
Q Consensus         2 g~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~g---i~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~   78 (239)
                      |..|++|++++|||++|++||+++|+++|++||   +|+||||||+++.+++.+....++...++||+++|+|||+++|+
T Consensus       158 ~~~t~lvv~t~gtt~tG~idpi~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~~~~d~~~~vDsis~s~HK~~~~P~  237 (380)
T PRK02769        158 KNQPPIIFANIGTTMTGAIDNIKEIQEILKKIGIDDYYIHADAALSGMILPFVNNPPPFSFADGIDSIAISGHKFIGSPM  237 (380)
T ss_pred             CCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCCceEEEEEecccceeecccCccccCCccCCCCEEEECCcccCCCCC
Confidence            567999999999999999999999999999998   69999999999998765433223322369999999999999999


Q ss_pred             cceEEEeeCcccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438           79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE  157 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~  157 (239)
                      |||++++++. ++..... ...+++..+++++++|+ +.++++|.+++.+|.+|++++++++.++++++.++|++. |++
T Consensus       238 g~G~l~~r~~-~~~~~~~-~~~yl~~~d~t~~GSR~g~~~l~lw~aL~~lg~~G~~~~~~~~~~la~~l~~~L~~~-g~~  314 (380)
T PRK02769        238 PCGIVLAKKK-YVERISV-DVDYIGSRDQTISGSRNGHTALLLWAAIRSLGSKGLRQRVQHCLDMAQYAVDRLQAN-GIP  314 (380)
T ss_pred             CcEEEEEehh-hhhhccc-CccccCCCCCCccCCCCcHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhC-CCE
Confidence            9999999863 3333221 12233334567788886 678999999999999999999999999999999999885 999


Q ss_pred             EEcCCCeeEEEEEEcC
Q 048438          158 VVFPCHFAVVCFRVSP  173 (239)
Q Consensus       158 ~~~~~~~~iv~f~~~~  173 (239)
                      ++.+|.+++|+|+.+.
T Consensus       315 ~~~~p~~~~v~f~~~~  330 (380)
T PRK02769        315 AWRNPNSITVVFPCPS  330 (380)
T ss_pred             EEcCCCceEEEEcCCC
Confidence            9999999999998553

>PLN03032 serine decarboxylase; Provisional

Probab=99.97  E-value=4.2e-31  Score=226.78  Aligned_cols=167  Identities=21%  Similarity=0.298  Sum_probs=139.4

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhC-----CEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcc
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFG-----IWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATL   78 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~g-----i~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~   78 (239)
                      .|++|++++|||++|++|||++|+++|+++|     +|+||||||+++.+++......++....+||+++|+|||+++|+
T Consensus       161 ~~~lvv~tagtt~tG~idpi~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~~~~vDSis~s~HK~~g~P~  240 (374)
T PLN03032        161 KPAILNVNIGTTVKGAVDDLDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSRAPEVTFRKPIGSVSVSGHKFLGCPM  240 (374)
T ss_pred             CCEEEEEEecCcCCccCCCHHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccCCCcccCCCcCCcEEEECcccccCCCc
Confidence            6899999999999999999999999999996     59999999999988864322212222359999999999999999


Q ss_pred             cceEEEeeCcccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438           79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE  157 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~  157 (239)
                      |||+++++++ ++..... ...++...+++++++|+ +.++++|..++.+|.+|++++++++.++++++.+.|++. +++
T Consensus       241 g~G~ll~r~~-~~~~~~~-~~~Yl~~~d~ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~~~~~~~a~~l~~~l~~~-~~~  317 (374)
T PLN03032        241 PCGVALTRKK-HVKALSQ-NVEYLNSRDATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHCMRNAHYLKDRLTEA-GLT  317 (374)
T ss_pred             CeEEEEEEch-hhHhhcc-CCcccCCCCCcccCCCchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC-CCc
Confidence            9999999863 3332221 22344445678899987 689999999999999999999999999999999999986 899


Q ss_pred             EEcCCCeeEEEEEEcC
Q 048438          158 VVFPCHFAVVCFRVSP  173 (239)
Q Consensus       158 ~~~~~~~~iv~f~~~~  173 (239)
                      ++..|.+++|+|+-+.
T Consensus       318 ~~~~p~~~~V~f~~~~  333 (374)
T PLN03032        318 CRLNELSSTVVFERPM  333 (374)
T ss_pred             EEECCCceEEEEcCCC
Confidence            8888899999999764

>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=7.6e-29  Score=215.04  Aligned_cols=203  Identities=15%  Similarity=0.165  Sum_probs=155.2

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL   83 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l   83 (239)
                      .+-+|++++.+|.+|++.|+++|+++||++|+|++|||||++++++++     ++.++ ||++++|+||||++|.|+|+|
T Consensus       162 ~Tklvais~vSn~tG~~~pv~~I~~la~~~ga~v~VDaaq~~~h~~id-----v~~l~-~Df~afsgHKwl~gP~GiGvL  235 (405)
T COG0520         162 KTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAGHLPID-----VQELG-CDFLAFSGHKWLLGPTGIGVL  235 (405)
T ss_pred             CceEEEEECccccccccchHHHHHHHHHHcCCEEEEECccccCccCCC-----chhcC-CCEEEEcccccccCCCceEEE
Confidence            467999999999999999999999999999999999999999999998     66664 999999999999999999999


Q ss_pred             EeeCccccccccc--CCCCc-----------cCCCCceecCCCC--CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Q 048438           84 WATNPEYLKNKAT--ESKPV-----------VDYKDWQITLSRS--FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFER  148 (239)
Q Consensus        84 ~~~~~~~l~~~~~--~~~~~-----------~~~~~~~~~~~~~--~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~  148 (239)
                      |+++ +.+....+  ..+..           +...++.++.|+.  ...+.+-.+++.+...|++++.++.++|++++.+
T Consensus       236 y~r~-~~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ig~~~i~~~e~~L~~~~~~  314 (405)
T COG0520         236 YVRK-ELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHERELTEYLLE  314 (405)
T ss_pred             EEch-HHHhhcCCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            9975 34433211  11111           1112334444544  2346666778877777888999999999999999


Q ss_pred             HHhCCCCeEEEcCC---CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECC---
Q 048438          149 LVSGDKRFEVVFPC---HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGG---  222 (239)
Q Consensus       149 ~l~~~~g~~~~~~~---~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g---  222 (239)
                      .|+++|++++++++   +.++++|.+++...                        ..+...|.++| +.+..-....   
T Consensus       315 ~L~~~~~v~i~g~~~~~r~~~vsF~v~~~~~------------------------~dv~~~L~~~g-I~vr~g~~ca~p~  369 (405)
T COG0520         315 GLSELPGVEIYGPPDADRGGIVSFNVKGIHP------------------------HDVATLLDEKG-IAVRAGHHCAQPL  369 (405)
T ss_pred             HHhcCCCeEEecCCcccCceEEEEEeCCCCH------------------------HHHHHHHHhCC-eEEEeccccccHH
Confidence            99999999999975   68999999987531                        25566777778 4332211111   


Q ss_pred             ------EeEEEEEecCCCCCcC
Q 048438          223 ------IYAIRFATGATLTEER  238 (239)
Q Consensus       223 ------~~~lR~~~~~~~t~~~  238 (239)
                            ...+|+|++-+||.+|
T Consensus       370 ~~~~~~~~~iR~S~~~YNt~ed  391 (405)
T COG0520         370 HRLLGVDATIRASLHLYNTEED  391 (405)
T ss_pred             HHhcCCCCceEEEEeecCCHHH
Confidence                  1239999999999875

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=99.96  E-value=9.7e-29  Score=211.58  Aligned_cols=188  Identities=35%  Similarity=0.660  Sum_probs=157.1

Q ss_pred             CCccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccce
Q 048438            2 GLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCC   81 (239)
Q Consensus         2 g~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g   81 (239)
                      |..|.+|++++++|.+|.++|+++|+++|+++|+|+|||+||+.+.++.+........++++|++++++|||+++|.|+|
T Consensus       146 ~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p~g~g  225 (345)
T cd06450         146 GLNPIMVVATAGTTDTGAIDPLEEIADLAEKYDLWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCS  225 (345)
T ss_pred             CCCcEEEEEecccCCCCCCCCHHHHHHHHHHhCCeEEEechhhHHHhhChhhHHHhcCccccCEEEEchhHhhCCCcchH
Confidence            55788999999999999999999999999999999999999999887665433222334469999999999999999999


Q ss_pred             EEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcC
Q 048438           82 CLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFP  161 (239)
Q Consensus        82 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~  161 (239)
                      +++++                              ++++|.+++.++.++++++.++..++++++.+.|+++++++++.+
T Consensus       226 ~~~~~------------------------------~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~  275 (345)
T cd06450         226 AVLVR------------------------------ALKLWATLRRFGRDGYGEHIDRIVDLAKYLAELIRADPGFELLGE  275 (345)
T ss_pred             HHHHH------------------------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC
Confidence            98764                              577888999999999999999999999999999999999999888


Q ss_pred             CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCCcC
Q 048438          162 CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTEER  238 (239)
Q Consensus       162 ~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~  238 (239)
                      ++.++++|++++..                   ..+..+..+.++|.++|.++++.....+..++|+++++++|+++
T Consensus       276 ~~~~iv~f~~~~~~-------------------~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~lRis~~~~~~t~~  333 (345)
T cd06450         276 PNLSLVCFRLKPSV-------------------KLDELNYDLSDRLNERGGWHVPATTLGGPNVLRFVVTNPLTTRD  333 (345)
T ss_pred             CceeEEEEEECCcc-------------------hhhHHHHHHHHHHHhcCCEEEEeeEECCeEEEEEEecCCCCCHH
Confidence            88999999987521                   00123347788888888887877666678899999999875544

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=99.91  E-value=3e-23  Score=179.29  Aligned_cols=203  Identities=24%  Similarity=0.313  Sum_probs=142.7

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccc-cccCCCCCcceEEEcCcccCCCcccceEE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFR-HFIDGVEGADSFSLNAHKWFFATLDCCCL   83 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~-~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l   83 (239)
                      +.+|++++++|.+|.++|+++|+++|+++|+++|||+||+++.+++.... .......++|++++++|||+++|.++|++
T Consensus       152 ~~~vi~~~~~~~tG~~~~l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~~vd~~~~s~~K~~~a~~~~G~~  231 (371)
T PRK13520        152 TIGIVGIAGTTELGQVDPIPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSLPGVDSITIDPHKMGLAPIPAGGI  231 (371)
T ss_pred             CEEEEEEcCCcCCcccCCHHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCccccCCCCceEEECCccccCccCCceEE
Confidence            55677888999999999999999999999999999999998776542211 01111235999999999999999999999


Q ss_pred             EeeCcccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcCC
Q 048438           84 WATNPEYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPC  162 (239)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~~  162 (239)
                      +++++.++...............+...+++. ...++++.+++.++.++++++.++..++++++.+.|+++ |++++.++
T Consensus       232 ~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~  310 (371)
T PRK13520        232 LFRDESYLDALAVDTPYLTSKKQATLTGTRSGAGVAATYAVMKYLGREGYRKVVERCMENTRWLAEELKER-GFEPVIEP  310 (371)
T ss_pred             EEcCHHHHHhhcccCccccCCCCcceEeeccChHHHHHHHHHhhhcHhHHHHHHHHHHHHHHHHHHHHHhC-CCEEecCC
Confidence            9876544433211101111111112222332 345677888888888999999999999999999999987 99865567


Q ss_pred             CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCCc
Q 048438          163 HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTEE  237 (239)
Q Consensus       163 ~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~  237 (239)
                      ..++++|.+++.                          ..+.++|.++|.. +..  ..+..++|++++..+|++
T Consensus       311 ~~~~v~~~~~~~--------------------------~~v~~~L~~~gi~-v~~--~~~~~~iRis~~~~~t~e  356 (371)
T PRK13520        311 VLNIVAFDDPNP--------------------------DEVREKLRERGWR-VSV--TRCPEALRIVCMPHVTRE  356 (371)
T ss_pred             CceEEEEecCCH--------------------------HHHHHHHHHCCce-ecc--CCCCCEEEEEEECCCCHH
Confidence            788999887531                          1556667666654 322  223467999988766554

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=99.91  E-value=5.3e-23  Score=177.97  Aligned_cols=203  Identities=23%  Similarity=0.295  Sum_probs=141.7

Q ss_pred             EEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccc----cccCCCCCcceEEEcCcccCCCcccce
Q 048438            6 LFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFR----HFIDGVEGADSFSLNAHKWFFATLDCC   81 (239)
Q Consensus         6 ~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~----~~~~~~~~~Ds~~~~~hK~l~~P~g~g   81 (239)
                      ..++.++++|.+|.++|+++|+++||++|+|+|||+||+++.+++..+.    .......++|++++++|||+++|.++|
T Consensus       155 ~~vv~~~~~~~tG~~~~~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~~~~~~G  234 (373)
T TIGR03812       155 IGIVGIAGTTELGQIDDIEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGLSPIPAG  234 (373)
T ss_pred             EEEEEECCCCCCCccCCHHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCccccCCCCCEEEECccccCCCcCCce
Confidence            4456666889999999999999999999999999999997765432110    001112258999999999999999998


Q ss_pred             EEEeeCcccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc
Q 048438           82 CLWATNPEYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF  160 (239)
Q Consensus        82 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~  160 (239)
                      .+++.+++++...............+...+++. ...+.++.+++.++.++++++.++..++++++++.|+++ |++.+.
T Consensus       235 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~  313 (373)
T TIGR03812       235 GILFRSKSYLKYLSVDAPYLTVKKQATITGTRSGASAAATYAVIKYLGREGYRKIVAECMENTRYLVEELKKI-GFEPVI  313 (373)
T ss_pred             EEEEeCHHHHhhhcccCcccCCCCCcceEeechhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC-CCeEEc
Confidence            888766655433211111101111122223333 345677788898899999999999999999999999997 666555


Q ss_pred             CCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCCcC
Q 048438          161 PCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTEER  238 (239)
Q Consensus       161 ~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~  238 (239)
                      ++..++|+|++++.                      .    .+.++|.++|.+ +...  .+..++|++++.++|.+|
T Consensus       314 ~~~~~~v~~~~~~~----------------------~----~v~~~L~~~gi~-v~~~--~~~~~iRis~~~~~t~ed  362 (373)
T TIGR03812       314 EPVLNIVAFEVDDP----------------------E----EVRKKLRDRGWY-VSVT--RCPKALRIVVMPHVTREH  362 (373)
T ss_pred             CCCceEEEEEeCCH----------------------H----HHHHHHHHCCce-eccC--CCCCEEEEEEECCCCHHH
Confidence            67789999987531                      1    566677777654 3322  245689999988776653

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue

Probab=99.91  E-value=2.1e-23  Score=180.50  Aligned_cols=200  Identities=14%  Similarity=0.131  Sum_probs=143.0

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL   83 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l   83 (239)
                      .+.+|++++.+|.+|.+.|+++|+++||++|++++||++|+.+.++++     ++.+ ++|++++++|| +++|.|+|++
T Consensus       139 ~~~lv~~~~~~~~tG~~~pi~~I~~~~~~~~~~~~vD~~~~~g~~~id-----~~~~-~~D~~~~s~~K-l~gp~G~g~l  211 (371)
T PF00266_consen  139 DTRLVSISHVENSTGVRNPIEEIAKLAHEYGALLVVDAAQSAGCVPID-----LDEL-GADFLVFSSHK-LGGPPGLGFL  211 (371)
T ss_dssp             TESEEEEESBETTTTBBSSHHHHHHHHHHTTSEEEEE-TTTTTTSS-------TTTT-TESEEEEESTS-TTSSSTEEEE
T ss_pred             ccceEEeecccccccEEeeeceehhhhhccCCceeEechhcccccccc-----cccc-ccceeeecccc-cCCCCchhhh
Confidence            467899999999999999999999999999999999999999999887     5555 49999999999 8999999999


Q ss_pred             EeeCccccccc---ccCCCCccC----------CCCceecCCCCC--ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Q 048438           84 WATNPEYLKNK---ATESKPVVD----------YKDWQITLSRSF--RSLKLWFVIRNYGMENLRHFLRSHVNMARLFER  148 (239)
Q Consensus        84 ~~~~~~~l~~~---~~~~~~~~~----------~~~~~~~~~~~~--~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~  148 (239)
                      |+++. .+...   .... ...+          ...+.++.|+..  ..+.+..+++.+...|++++.++..++++++.+
T Consensus       212 ~v~~~-~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~~~~  289 (371)
T PF00266_consen  212 YVRPE-AIERLRPAKPGG-GYLDFPSLQEYGLADDARRFEGGTPNVPAIYALNEALKLLEEIGIERIRERIRELAEYLRE  289 (371)
T ss_dssp             EEEHH-HHHHHHTSSSSS-STTTHHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eehhh-hhhccccccccc-cccccccchhcccccccccccccceeeehhhhHHHHHhhhhccccccchhhhhhHHHHHHh
Confidence            99752 22211   1111 1000          111223333331  224455677777667888999999999999999


Q ss_pred             HHhCCCCeEEEcC----CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECC--
Q 048438          149 LVSGDKRFEVVFP----CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGG--  222 (239)
Q Consensus       149 ~l~~~~g~~~~~~----~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g--  222 (239)
                      .|+++++++++.+    ...++++|.+++...                        ..+.+.|.++ .+.+.. ....  
T Consensus       290 ~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------------------------~~~~~~L~~~-~I~~~~-G~~~~~  343 (371)
T PF00266_consen  290 ALEELPGIEVLGPDDEPRRPSIVSFNLPGSDA------------------------DDVVKYLEER-GIAVST-GSACAG  343 (371)
T ss_dssp             HHHHTTTEEESSSSCGGBGTTEEEEEETTSSH------------------------HHHHHHHHHH-TEEEEE-STTTCH
T ss_pred             hhhcCCceeEeeecccccccceEEEeecCCCH------------------------HHHHHHHhhc-CEEEec-cCcccH
Confidence            9999999998774    246799999966431                        2566677777 444443 2111  


Q ss_pred             --------EeEEEEEecCCCCCcC
Q 048438          223 --------IYAIRFATGATLTEER  238 (239)
Q Consensus       223 --------~~~lR~~~~~~~t~~~  238 (239)
                              ...+|+|++.++|.+|
T Consensus       344 ~~~~~~~~~~~iRvS~~~~nt~~d  367 (371)
T PF00266_consen  344 PSLDILGMGGVIRVSLHYYNTEED  367 (371)
T ss_dssp             HHHHHHHTTTEEEEE-GTTSSHHH
T ss_pred             HHHHHhCCCCEEEEeccCCCCHHH
Confidence                    2799999999998765

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

Probab=99.90  E-value=1e-22  Score=172.05  Aligned_cols=154  Identities=13%  Similarity=0.087  Sum_probs=120.2

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLW   84 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~   84 (239)
                      .++|.+++++|++|+++||+||+++||++|++||||++|+.|.++++     +..+. +|++++|+||+ ++|+|+|+||
T Consensus       142 T~LVSim~aNnE~G~IQpI~ei~~i~k~~~i~fHvDAvQa~Gkipi~-----~~~~~-vD~ls~SaHK~-~GpkGiGaLy  214 (386)
T COG1104         142 TILVSIMHANNETGTIQPIAEIGEICKERGILFHVDAVQAVGKIPID-----LEELG-VDLLSFSAHKF-GGPKGIGALY  214 (386)
T ss_pred             ceEEEEEecccCeeecccHHHHHHHHHHcCCeEEEehhhhcCceecc-----ccccC-cceEEeehhhc-cCCCceEEEE
Confidence            57899999999999999999999999999999999999999999998     44443 99999999997 7899999999


Q ss_pred             eeCcccccccccCCCCccCCCCceecCCCCCCh------HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC-CCeE
Q 048438           85 ATNPEYLKNKATESKPVVDYKDWQITLSRSFRS------LKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD-KRFE  157 (239)
Q Consensus        85 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~-~g~~  157 (239)
                      +++..-+.+...         ....+.++|...      +++..+++ +..+.++....+...|.++|.+.|.+. |++.
T Consensus       215 v~~~~~~~p~i~---------GGgQE~g~RsGTenv~~Ivg~~~A~~-~a~~~~~~~~~~~~~lr~~l~~~l~~~~p~~~  284 (386)
T COG1104         215 VRPGVRLEPLIH---------GGGQERGLRSGTENVPGIVGFGKAAE-IAVEELEEENARLRKLRDRLEDGLLEIIPDVY  284 (386)
T ss_pred             ECCCCccCceec---------cCcCCCCCCCCCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEE
Confidence            965333333321         124455666443      33333443 345677778888889999999999975 8888


Q ss_pred             EEcCC---CeeEEEEEEcCCC
Q 048438          158 VVFPC---HFAVVCFRVSPLP  175 (239)
Q Consensus       158 ~~~~~---~~~iv~f~~~~~~  175 (239)
                      +.+.+   -.|+++|.+++..
T Consensus       285 ~~g~~~~rlP~~~~~~f~gv~  305 (386)
T COG1104         285 LNGDDEPRLPNILNFSFPGVE  305 (386)
T ss_pred             EcCCcccCCCCeEEEEeCCCc
Confidence            87653   3579999998753

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=99.90  E-value=3.1e-22  Score=173.33  Aligned_cols=205  Identities=14%  Similarity=0.137  Sum_probs=144.6

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL   83 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l   83 (239)
                      .|.+|++++.+|.+|.+.|+++|.++||++|++++||+||+.|..+++     +... ++|++++++|||+++|.|+|++
T Consensus       137 ~~~~v~~~~~~n~tG~~~~~~~i~~l~~~~~~~livD~a~~~g~~~~~-----~~~~-~~D~~~~s~~K~l~~p~g~g~l  210 (376)
T TIGR01977       137 NTKLIVVSHASNVTGTILPIEEIGELAQENGIFFILDAAQTAGVIPID-----MTEL-AIDMLAFTGHKGLLGPQGTGGL  210 (376)
T ss_pred             CCeEEEEECCCCCccccCCHHHHHHHHHHcCCEEEEEhhhccCccCCC-----chhc-CCCEEEecccccccCCCCceEE
Confidence            467888999999999999999999999999999999999999988776     3322 4999999999999999999999


Q ss_pred             EeeCcccccccccCCCC----ccCCC---CceecCCCC--CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 048438           84 WATNPEYLKNKATESKP----VVDYK---DWQITLSRS--FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK  154 (239)
Q Consensus        84 ~~~~~~~l~~~~~~~~~----~~~~~---~~~~~~~~~--~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~  154 (239)
                      ++++...+.+.......    ..+..   ...++.+..  ...+++..+++.+...|++++.++..++++++.+.|.+.+
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~l~~~~~~~l~~~~  290 (376)
T TIGR01977       211 YIREGIKLKPLKSGGTGSHSALIDQPSELPDRFESGTLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTEKLLNGLREIN  290 (376)
T ss_pred             EEcCCcCcCceecCCCccccccccccccchhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCC
Confidence            99765433322211100    01000   001122222  1225556677777777888888899999999999999889


Q ss_pred             CeEEEcCC----CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEE-----------
Q 048438          155 RFEVVFPC----HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVV-----------  219 (239)
Q Consensus       155 g~~~~~~~----~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~-----------  219 (239)
                      +++++.+.    ..++++|.+++..                        ...+.+.|.++..+.+....           
T Consensus       291 ~~~~~~~~~~~~~~~~v~~~~~~~~------------------------~~~~~~~L~~~~gi~v~~g~~~~~~~~~~~g  346 (376)
T TIGR01977       291 KVKIYGPADPANRVGVVSFTVEGID------------------------SEEVADILDEKFDIATRTGLHCAPLAHKTIG  346 (376)
T ss_pred             CeEEeCCCCccccCCeEEEEECCCC------------------------HHHHHHHHhccCCEEEEcccccchHHHHHhC
Confidence            99998752    3679999986432                        12566677666334343211           


Q ss_pred             ECCEeEEEEEecCCCCCcC
Q 048438          220 LGGIYAIRFATGATLTEER  238 (239)
Q Consensus       220 ~~g~~~lR~~~~~~~t~~~  238 (239)
                      ......+|++++.++|.+|
T Consensus       347 ~~~~~~iRis~~~~~t~~d  365 (376)
T TIGR01977       347 TFATGTIRLSLGYFNTEEE  365 (376)
T ss_pred             CCCCCeEEEecCCCCCHHH
Confidence            1123589999988887654

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>PLN02651 cysteine desulfurase

Probab=99.90  E-value=2.7e-22  Score=173.23  Aligned_cols=158  Identities=11%  Similarity=0.032  Sum_probs=117.6

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLW   84 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~   84 (239)
                      +.+|++++.+|.+|.++|+++|+++||++|+++|||++|+++.++++     ++.++ +|++++++||| ++|.|+|++|
T Consensus       139 t~lv~v~~~~n~tG~~~~l~~I~~~~~~~g~~~~vD~a~~~g~~~~~-----~~~~~-~D~~~~s~hK~-~gp~G~g~l~  211 (364)
T PLN02651        139 TALVSVMAVNNEIGVIQPVEEIGELCREKKVLFHTDAAQAVGKIPVD-----VDDLG-VDLMSISGHKI-YGPKGVGALY  211 (364)
T ss_pred             cEEEEEECCCCCceecccHHHHHHHHHHcCCEEEEEcchhhCCcccC-----cccCC-CCEEEechhhh-CCCCceEEEE
Confidence            56888999999999999999999999999999999999999998887     55554 99999999998 7899999999


Q ss_pred             eeCcccccccccC-CCCccCCCCceecCCCC--CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhC-CCCeEEEc
Q 048438           85 ATNPEYLKNKATE-SKPVVDYKDWQITLSRS--FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSG-DKRFEVVF  160 (239)
Q Consensus        85 ~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~-~~g~~~~~  160 (239)
                      ++++ .+....+. .++..   ....+.|++  ...+++..+++.+.. +.+++.++..+|++++.+.|++ ++|++++.
T Consensus       212 v~~~-~~~~l~p~~~g~~~---~~~~~~GT~~~~~~~~l~~al~~~~~-~~~~i~~~~~~l~~~l~~~l~~~~~~~~i~~  286 (364)
T PLN02651        212 VRRR-PRVRLEPLMSGGGQ---ERGRRSGTENTPLVVGLGAACELAMK-EMDYDEKHMKALRERLLNGLRAKLGGVRVNG  286 (364)
T ss_pred             EcCC-CCCCCCccccCCCc---cCCccCCCccHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHhhCCCEEEEC
Confidence            9753 22222110 00000   011223333  223555666766643 4577888999999999999985 68999998


Q ss_pred             C--CC---eeEEEEEEcCC
Q 048438          161 P--CH---FAVVCFRVSPL  174 (239)
Q Consensus       161 ~--~~---~~iv~f~~~~~  174 (239)
                      +  +.   .++++|.+++.
T Consensus       287 ~~~~~~~~~~i~~~~~~~~  305 (364)
T PLN02651        287 PRDPEKRYPGTLNLSFAYV  305 (364)
T ss_pred             CCCcccCcCCEEEEEeCCC
Confidence            5  22   46999999753

>TIGR01814 kynureninase kynureninase

Probab=99.90  E-value=3.1e-22  Score=175.28  Aligned_cols=199  Identities=11%  Similarity=0.042  Sum_probs=136.0

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL   83 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l   83 (239)
                      .+.+|++++.++.+|.+.|+++|+++||++|++++||++|++|.++++     +..+ ++|++++++||||++|+| |++
T Consensus       171 ~t~lv~~~~v~~~tG~~~~~~~i~~~~~~~g~~~~vD~aq~~G~~~id-----~~~~-gvD~~~~s~hK~l~g~pG-~~l  243 (406)
T TIGR01814       171 DIAVILLSGVQYYTGQLFDMAAITRAAHAKGALVGFDLAHAVGNVPLD-----LHDW-GVDFACWCTYKYLNAGPG-AGA  243 (406)
T ss_pred             CeEEEEEeccccccceecCHHHHHHHHHHcCCEEEEEcccccCCcccc-----cccC-CCCEEEEcCccccCCCCC-eEE
Confidence            456899999999999999999999999999999999999999999887     4444 499999999999988878 667


Q ss_pred             EeeCccc--ccccccCCCCc-----cC------CCCceecCCCC--CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Q 048438           84 WATNPEY--LKNKATESKPV-----VD------YKDWQITLSRS--FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFER  148 (239)
Q Consensus        84 ~~~~~~~--l~~~~~~~~~~-----~~------~~~~~~~~~~~--~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~  148 (239)
                      |+.....  +.+....+...     ++      ..+..++.|++  ...+++..+++.+...|++++.++..+|++++++
T Consensus       244 ~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~  323 (406)
T TIGR01814       244 FVHEKHAHTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFDQAGMEALRKKSLLLTDYLEE  323 (406)
T ss_pred             EEehhhhhhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            7644322  11111110000     00      00111122222  1224455567666556778888889999999999


Q ss_pred             HHhCC----CCeEEEcCC----CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEE
Q 048438          149 LVSGD----KRFEVVFPC----HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVL  220 (239)
Q Consensus       149 ~l~~~----~g~~~~~~~----~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~  220 (239)
                      .|++.    ++++++.+.    ..++++|.++ ..                        ...+.+.|.++|.+ +.   .
T Consensus       324 ~l~~~~~~~~~~~i~~~~~~~~r~~~v~~~~~-~~------------------------~~~~~~~L~~~gi~-v~---~  374 (406)
T TIGR01814       324 LIKARCGGPPVLTIITPRDHAQRGCQLSLTHP-VP------------------------GKAVFQALIKRGVI-GD---K  374 (406)
T ss_pred             HHHhhcCCCCceEEeCCCChhhcCCeEEEEec-CC------------------------HHHHHHHHHHCCEE-Ee---c
Confidence            99875    469988753    3578999886 21                        11556667666653 33   2


Q ss_pred             CCEeEEEEEec-CCCCCcC
Q 048438          221 GGIYAIRFATG-ATLTEER  238 (239)
Q Consensus       221 ~g~~~lR~~~~-~~~t~~~  238 (239)
                      .+...+|+|++ .++|.+|
T Consensus       375 ~~~~~iRiS~~~~~nt~~d  393 (406)
T TIGR01814       375 REPSVIRVAPVPLYNTFVD  393 (406)
T ss_pred             cCCCeEEEechhccCCHHH
Confidence            33458999984 6766653

This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.

>PRK10874 cysteine sulfinate desulfinase; Provisional

Probab=99.89  E-value=9.8e-22  Score=171.79  Aligned_cols=203  Identities=14%  Similarity=0.146  Sum_probs=143.7

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL   83 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l   83 (239)
                      .+-+|++++.+|.+|.+.|+++|+++|+++|++++||++|+.+..+.+     +..+ ++|++++++|| +++|.|+|++
T Consensus       160 ~t~lv~i~~~~n~tG~~~~~~~i~~l~~~~g~~~ivD~a~~~g~~~~~-----~~~~-~~d~~~~s~~K-~~gp~G~G~l  232 (401)
T PRK10874        160 RTRILALGQMSNVTGGCPDLARAITLAHQAGMVVMVDGAQGAVHFPAD-----VQAL-DIDFYAFSGHK-LYGPTGIGVL  232 (401)
T ss_pred             CcEEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEECCcccccccCC-----chhc-CCCEEEEeccc-ccCCCccEEE
Confidence            356888999999999999999999999999999999999998877665     3334 39999999999 5679999999


Q ss_pred             EeeCcccccccccC--CCCc---cCC-------CCceecCCCCC--ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Q 048438           84 WATNPEYLKNKATE--SKPV---VDY-------KDWQITLSRSF--RSLKLWFVIRNYGMENLRHFLRSHVNMARLFERL  149 (239)
Q Consensus        84 ~~~~~~~l~~~~~~--~~~~---~~~-------~~~~~~~~~~~--~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~  149 (239)
                      ++++ +.+......  .+..   .++       ..+.++.|+.-  ..+++..+++.+...+++++.++..++++++.+.
T Consensus       233 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~g~~~~~~~~~~l~~~l~~~  311 (401)
T PRK10874        233 YGKS-ELLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLADIDINQAESWSRSLATLAEDA  311 (401)
T ss_pred             EEch-HHHhcCCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence            9853 333322110  0000   000       11223333331  3455666676665566777778888999999999


Q ss_pred             HhCCCCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEE--------C
Q 048438          150 VSGDKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVL--------G  221 (239)
Q Consensus       150 l~~~~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~--------~  221 (239)
                      |++++|++++.++..++++|.+++..                        ...+.+.|.++|..+.+....        .
T Consensus       312 l~~~~g~~~~~~~~~~i~~~~~~~~~------------------------~~~~~~~L~~~gI~v~~g~~~~~~~~~~~g  367 (401)
T PRK10874        312 LAKLPGFRSFRCQDSSLLAFDFAGVH------------------------HSDLVTLLAEYGIALRAGQHCAQPLLAALG  367 (401)
T ss_pred             HhcCCCEEEeCCCCCcEEEEEECCcC------------------------HHHHHHHHHHCCcEEeccccchHHHHHHhC
Confidence            99999999887778889999876421                        124556676677665543321        1


Q ss_pred             CEeEEEEEecCCCCCcC
Q 048438          222 GIYAIRFATGATLTEER  238 (239)
Q Consensus       222 g~~~lR~~~~~~~t~~~  238 (239)
                      ...++|+|++.++|.+|
T Consensus       368 ~~~~iRiS~~~~nt~ed  384 (401)
T PRK10874        368 VTGTLRASFAPYNTQSD  384 (401)
T ss_pred             CCCEEEEEecccCCHHH
Confidence            23689999999987764

>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated

Probab=99.88  E-value=1.2e-21  Score=171.50  Aligned_cols=203  Identities=15%  Similarity=0.147  Sum_probs=140.8

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL   83 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l   83 (239)
                      .+-+|++++.+|.+|.+.|+++|+++||++|++++||++|+.+..+++     +..+ ++|++++++|| +++|.|+|++
T Consensus       164 ~t~lv~l~~~~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~~~-----~~~~-~~D~~~~s~~K-~~gp~G~G~l  236 (406)
T PRK09295        164 RTRLLAITHVSNVLGTENPLAEMIALAHQHGAKVLVDGAQAVMHHPVD-----VQAL-DCDFYVFSGHK-LYGPTGIGIL  236 (406)
T ss_pred             CcEEEEEecchhcccccCCHHHHHHHHHHcCCEEEEEcccccCccccC-----chhc-CCCEEEeehhh-ccCCCCcEEE
Confidence            467888999999999999999999999999999999999999988776     4333 49999999999 5679999999


Q ss_pred             EeeCcccccccccC--CCCc---cC--------CCCceecCCCC--CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Q 048438           84 WATNPEYLKNKATE--SKPV---VD--------YKDWQITLSRS--FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFER  148 (239)
Q Consensus        84 ~~~~~~~l~~~~~~--~~~~---~~--------~~~~~~~~~~~--~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~  148 (239)
                      ++++ +.+......  +...   .+        .....++.|++  ...+++..+++.+...|++++.++..++++++.+
T Consensus       237 ~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~  315 (406)
T PRK09295        237 YVKE-ALLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSALGLNNIAEYEQNLMHYALS  315 (406)
T ss_pred             EEch-HhHhhCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence            9864 332221110  0000   00        00122333333  2335666677766555777788888899999999


Q ss_pred             HHhCCCCeEEEcCC-CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEE--------
Q 048438          149 LVSGDKRFEVVFPC-HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVV--------  219 (239)
Q Consensus       149 ~l~~~~g~~~~~~~-~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~--------  219 (239)
                      .|+++++++++.+. ..+|++|.+++...                        ..+.+.|.+.|....+...        
T Consensus       316 ~l~~~~~~~~~~~~~~~~iv~~~~~~~~~------------------------~~~~~~L~~~gI~v~~g~~c~~~~~~~  371 (406)
T PRK09295        316 QLESVPDLTLYGPQNRLGVIAFNLGKHHA------------------------YDVGSFLDNYGIAVRTGHHCAMPLMAY  371 (406)
T ss_pred             HHhcCCCEEEeCCCCCceEEEEEECCcCH------------------------HHHHHHHHhCCeEEeccccchHHHHHH
Confidence            99999999998763 47899999875321                        1344456555544322110        


Q ss_pred             ECCEeEEEEEecCCCCCcC
Q 048438          220 LGGIYAIRFATGATLTEER  238 (239)
Q Consensus       220 ~~g~~~lR~~~~~~~t~~~  238 (239)
                      .....++|+|++-++|.+|
T Consensus       372 ~~~~~~iRiS~~~ynt~~d  390 (406)
T PRK09295        372 YNVPAMCRASLAMYNTHEE  390 (406)
T ss_pred             HCCCCEEEEEccCCCCHHH
Confidence            1112479999998888764

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA

Probab=99.88  E-value=3e-21  Score=168.57  Aligned_cols=203  Identities=15%  Similarity=0.118  Sum_probs=141.3

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL   83 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l   83 (239)
                      .+-+|++++.++.+|.+.|+++|+++||++|++++||++|+.+..+.+     +..+ ++|++++++|| +++|.|+|++
T Consensus       157 ~t~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~~~-----~~~~-~~d~~~~s~~K-~~gp~G~G~l  229 (398)
T TIGR03392       157 RTRILALGQMSNVTGGCPDLARAITLAHQYGAVVVVDGAQGVVHGPPD-----VQAL-DIDFYAFSGHK-LYGPTGIGVL  229 (398)
T ss_pred             CceEEEEECccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCCCCC-----hhhc-CCCEEEEeccc-ccCCCceEEE
Confidence            356788899999999999999999999999999999999988877654     3333 39999999999 5679999999


Q ss_pred             EeeCcccccccccC--CCCc---cCC-------CCceecCCCC-C-ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Q 048438           84 WATNPEYLKNKATE--SKPV---VDY-------KDWQITLSRS-F-RSLKLWFVIRNYGMENLRHFLRSHVNMARLFERL  149 (239)
Q Consensus        84 ~~~~~~~l~~~~~~--~~~~---~~~-------~~~~~~~~~~-~-~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~  149 (239)
                      ++++ +.+......  ....   .+.       ..+.++.|+. + ..+++..+++.+...+++++.++..++++++.+.
T Consensus       230 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~g~~~i~~~~~~l~~~l~~~  308 (398)
T TIGR03392       230 YGKT-ELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDIAAAEAWSVSLADLAEER  308 (398)
T ss_pred             EEcH-HHHhhCCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence            9753 333222110  0000   000       1122333333 1 3356666777665557777788888999999999


Q ss_pred             HhCCCCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEE--------C
Q 048438          150 VSGDKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVL--------G  221 (239)
Q Consensus       150 l~~~~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~--------~  221 (239)
                      |++++|++++.++..++++|.+++..                        ...+.+.|.++|....+....        .
T Consensus       309 l~~l~g~~~~~~~~~~i~~~~~~~~~------------------------~~~l~~~L~~~gI~v~~g~~~~~~~~~~~g  364 (398)
T TIGR03392       309 LAQLPGFRSFRCPGSSLLAFDFAGVH------------------------HSDLAALLAESGIALRAGQHCAQPLMAALG  364 (398)
T ss_pred             HhcCCCeEEeCCCCCcEEEEEeCCcC------------------------HHHHHHHHHhCCEEEecCccchHHHHHHhC
Confidence            99999999887777889999976421                        124556676665544332211        1


Q ss_pred             CEeEEEEEecCCCCCcC
Q 048438          222 GIYAIRFATGATLTEER  238 (239)
Q Consensus       222 g~~~lR~~~~~~~t~~~  238 (239)
                      ...++|+|++.++|.+|
T Consensus       365 ~~~~iRvS~~~~~t~~e  381 (398)
T TIGR03392       365 VSGTLRASFAPYNTQQD  381 (398)
T ss_pred             CCCEEEEEeeccCCHHH
Confidence            13589999999888764

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase

Probab=99.87  E-value=9e-21  Score=166.90  Aligned_cols=203  Identities=14%  Similarity=0.127  Sum_probs=140.3

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL   83 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l   83 (239)
                      .+-+|++++.+|.+|.+.|+++|+++||++|++++||++|+.+..+++     +..+ ++|++++++|| +++|.|+|++
T Consensus       173 ~t~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~a~~~g~~~~~-----~~~~-~~d~~~~s~~K-~~gp~G~G~l  245 (424)
T PLN02855        173 KTKLVATHHVSNVLGSILPVEDIVHWAHAVGAKVLVDACQSVPHMPVD-----VQTL-GADFLVASSHK-MCGPTGIGFL  245 (424)
T ss_pred             CceEEEEeCccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCcCCC-----chhc-CCCEEEeeccc-ccCCCccEEE
Confidence            456888999999999999999999999999999999999998877765     3443 38999999999 5779999999


Q ss_pred             EeeCcccccccccC--CCC-----ccCCC-----CceecCCCC--CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Q 048438           84 WATNPEYLKNKATE--SKP-----VVDYK-----DWQITLSRS--FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERL  149 (239)
Q Consensus        84 ~~~~~~~l~~~~~~--~~~-----~~~~~-----~~~~~~~~~--~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~  149 (239)
                      ++++ +.+....+.  .+.     ..+..     ...++.|++  ...+.+..+++.+...|++++.++..++++++++.
T Consensus       246 ~~~~-~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~  324 (424)
T PLN02855        246 WGKS-DLLESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEIGMDRIHEYEVELGTYLYEK  324 (424)
T ss_pred             EEch-hhhhcCCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence            9864 343322110  000     00000     011222222  12345556677665567888888899999999999


Q ss_pred             HhCCCCeEEEcCC------CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEE---
Q 048438          150 VSGDKRFEVVFPC------HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVL---  220 (239)
Q Consensus       150 l~~~~g~~~~~~~------~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~---  220 (239)
                      |++++|++++.+.      ..++++|.+++..                        ...+.+.|.++..+.+.....   
T Consensus       325 L~~~~g~~i~~~~~~~~~~r~~~v~~~~~~~~------------------------~~~v~~~L~~~~gI~v~~g~~c~~  380 (424)
T PLN02855        325 LSSVPGVRIYGPKPSEGVGRAALCAFNVEGIH------------------------PTDLSTFLDQQHGVAIRSGHHCAQ  380 (424)
T ss_pred             HhcCCCEEEeCCCcccccCcccEEEEEECCcC------------------------HHHHHHHhcccCCEEEechhhhhH
Confidence            9999999999752      3589999986532                        114566666663343332110   


Q ss_pred             -----CC-EeEEEEEecCCCCCcC
Q 048438          221 -----GG-IYAIRFATGATLTEER  238 (239)
Q Consensus       221 -----~g-~~~lR~~~~~~~t~~~  238 (239)
                           .| ..++|+|++-++|.+|
T Consensus       381 ~~~~~~g~~~~iRiS~~~ynt~~d  404 (424)
T PLN02855        381 PLHRYLGVNASARASLYFYNTKEE  404 (424)
T ss_pred             HHHHHhCCCCeEEEEeccCCCHHH
Confidence                 11 2579999999888764

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=99.87  E-value=9.1e-21  Score=165.73  Aligned_cols=203  Identities=15%  Similarity=0.167  Sum_probs=138.2

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL   83 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l   83 (239)
                      .|.+|+.++.+|.+|.+.|+++|+++||++|+++|||+||+.+..+.+     +..+ ++|++++++||++ +|.|+|++
T Consensus       159 ~~~lv~~~~~~~~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~g~~~~~-----~~~~-~~d~~~~s~~K~~-gp~G~g~l  231 (403)
T TIGR01979       159 KTKLVAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQAVPHMPVD-----VQAL-DCDFYVFSGHKMY-GPTGIGVL  231 (403)
T ss_pred             CCeEEEEEcccccccccCCHHHHHHHHHHcCCEEEEEchhhcCccccC-----cccc-CCCEEEEeccccc-CCCCceEE
Confidence            467888999999999999999999999999999999999999887665     3333 4999999999975 69999999


Q ss_pred             EeeCcccccccccC--CCCccC--------C--CCceecCCCC-C-ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Q 048438           84 WATNPEYLKNKATE--SKPVVD--------Y--KDWQITLSRS-F-RSLKLWFVIRNYGMENLRHFLRSHVNMARLFERL  149 (239)
Q Consensus        84 ~~~~~~~l~~~~~~--~~~~~~--------~--~~~~~~~~~~-~-~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~  149 (239)
                      ++++ +.+......  .+...+        +  ..+.++.+++ . ..++++.+++.+...|++++.++..++++++.+.
T Consensus       232 ~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~g~~~~~~~~~~l~~~l~~~  310 (403)
T TIGR01979       232 YGKE-ELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLENIEAHEHELTAYALER  310 (403)
T ss_pred             EEch-HHHhcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence            9864 332221110  000000        0  0111222222 1 2355566666665556778888899999999999


Q ss_pred             HhCCCCeEEEcCC----CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEE-------
Q 048438          150 VSGDKRFEVVFPC----HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNV-------  218 (239)
Q Consensus       150 l~~~~g~~~~~~~----~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-------  218 (239)
                      |+++++++++.++    ..++++|.+++..                        ...+.+.|.++|....+..       
T Consensus       311 l~~~~g~~~~~~~~~~~~~~~v~~~~~~~~------------------------~~~~~~~L~~~gI~v~~g~~~~~~~~  366 (403)
T TIGR01979       311 LGEIPGLRIYGPRDAEDRGGIISFNVEGVH------------------------PHDVGTILDEEGIAVRSGHHCAQPLM  366 (403)
T ss_pred             HhcCCCEEEeCCCCccccCceEEEEeCCcC------------------------HHHHHHHHhhCCEEEcchhhhhHHHH
Confidence            9998899998754    3789999986521                        1144556666654432211       


Q ss_pred             -EECCEeEEEEEecCCCCCcC
Q 048438          219 -VLGGIYAIRFATGATLTEER  238 (239)
Q Consensus       219 -~~~g~~~lR~~~~~~~t~~~  238 (239)
                       ......++|+|++.++|.+|
T Consensus       367 ~~~~~~~~iRiS~~~~~t~~d  387 (403)
T TIGR01979       367 RRFGVPATCRASFYIYNTEED  387 (403)
T ss_pred             HHhCCCCEEEEEeccCCCHHH
Confidence             01113579999998877654

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>PRK03080 phosphoserine aminotransferase; Provisional

Probab=99.87  E-value=1.7e-21  Score=168.96  Aligned_cols=200  Identities=8%  Similarity=-0.064  Sum_probs=135.5

Q ss_pred             EEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEEee
Q 048438            7 FLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWAT   86 (239)
Q Consensus         7 ~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~   86 (239)
                      .|++++.+|.+|.+.|+++|++  |++|++++|||+|+.|..+++     ++.   +|++++++||||++|.|+|++|++
T Consensus       139 ~V~~~h~~t~tG~~~pi~~I~~--~~~g~~~vVDa~qs~G~~pid-----v~~---iD~~~~s~~K~l~~P~G~g~l~v~  208 (378)
T PRK03080        139 DVVFTWNGTTTGVRVPVARWIG--ADREGLTICDATSAAFALPLD-----WSK---LDVYTFSWQKVLGGEGGHGMAILS  208 (378)
T ss_pred             CEEEEecCCccceeccchhhcc--ccCCCeEEEecccccccCCCC-----HHH---CcEEEEehhhhCCCCCceEEEEEC
Confidence            4789999999999999999999  889999999999999999998     443   899999999999999999999996


Q ss_pred             Cccccccccc---CC--CCccCCCC------ceecCCCCC--Ch---HHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHH
Q 048438           87 NPEYLKNKAT---ES--KPVVDYKD------WQITLSRSF--RS---LKLWFVIRNYGME-NLRHFLRSHVNMARLFERL  149 (239)
Q Consensus        87 ~~~~l~~~~~---~~--~~~~~~~~------~~~~~~~~~--~~---~~~~~~l~~~g~~-g~~~~~~~~~~la~~l~~~  149 (239)
                      + +.+....+   .+  ..++++..      ...+.++..  ..   ..+..+++.+-.. |++++.+++.++++++++.
T Consensus       209 ~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG~e~i~~r~~~l~~~l~~~  287 (378)
T PRK03080        209 P-RAVERLESYTPARPIPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSIGGLDALIARTAANASVLYDW  287 (378)
T ss_pred             H-HHHHhhhcccCCCCCchhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            4 33322111   10  11222111      011222221  11   2334567777666 7899999999999999999


Q ss_pred             HhCCCCeEEEcC-C--Ce-eEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeE
Q 048438          150 VSGDKRFEVVFP-C--HF-AVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYA  225 (239)
Q Consensus       150 l~~~~g~~~~~~-~--~~-~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~  225 (239)
                      |+++++++++.+ +  .+ .+++|++++..                     ......+..+|.+++.+............
T Consensus       288 l~~~~~~~~~~~~~~~~s~~i~~~~~~~~~---------------------~~~~~~~~~~l~~~~i~v~~g~~~~~~~~  346 (378)
T PRK03080        288 AEKTPWATPLVADPATRSNTSVTLDFVDAQ---------------------AAVDAAAVAKLLRENGAVDIEPYRDAPNG  346 (378)
T ss_pred             HHhCCCcccccCCccccCccEEEEEcCCch---------------------HHHHHHHHHHHHHcCCeeccccccCCCCc
Confidence            999877787742 2  23 58999876510                     01112344455555544332111112368


Q ss_pred             EEEEecCCCCCcC
Q 048438          226 IRFATGATLTEER  238 (239)
Q Consensus       226 lR~~~~~~~t~~~  238 (239)
                      +|++++.++|.+|
T Consensus       347 vRis~~~~~t~~d  359 (378)
T PRK03080        347 LRIWCGPTVEPAD  359 (378)
T ss_pred             EEEecCCCCCHHH
Confidence            9999998888654

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=99.86  E-value=2.2e-20  Score=162.08  Aligned_cols=198  Identities=14%  Similarity=0.066  Sum_probs=135.5

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL   83 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l   83 (239)
                      .+.+|++++.+|.+|.+.|+++|+++||++|+++|||++|+.+..+++     +..+ ++|++++++|| +++|.|+|++
T Consensus       136 ~~~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~~~~~g~~~~~-----~~~~-~~D~~~~s~~K-~~gp~G~g~l  208 (379)
T TIGR03402       136 DTALVSVMWANNETGTIFPIEEIGEIAKERGALFHTDAVQAVGKIPID-----LKEM-NIDMLSLSGHK-LHGPKGVGAL  208 (379)
T ss_pred             CcEEEEEEcccCCeeecccHHHHHHHHHHcCCEEEEECcccccccccC-----cccC-CCCEEEEcHHH-cCCCCceEEE
Confidence            356888899999999999999999999999999999999999988776     4444 49999999999 6889999999


Q ss_pred             EeeCcccccccccCCCCccCCCCceecCCCC--CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhC-CCCeEEEc
Q 048438           84 WATNPEYLKNKATESKPVVDYKDWQITLSRS--FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSG-DKRFEVVF  160 (239)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~-~~g~~~~~  160 (239)
                      |+++...+.+...  +..   .....+.++.  ...+.+..+++.+ .+.++++.++..++.+++.+.|++ ++++++..
T Consensus       209 ~v~~~~~~~p~~~--g~~---~~~~~~~gt~~~~~~~~l~~al~~~-~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~  282 (379)
T TIGR03402       209 YIRKGTRFRPLLR--GGH---QERGRRAGTENVPGIVGLGKAAELA-TEHLEEENTRVRALRDRLEAGLLARIPDARLNG  282 (379)
T ss_pred             EECCCCCCCCccc--CCc---cCCCcCCCCccHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEeC
Confidence            9975432221110  000   0011112222  1123344445543 345677778888999999999985 89999887


Q ss_pred             CCC---eeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEE-E----------------
Q 048438          161 PCH---FAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVV-L----------------  220 (239)
Q Consensus       161 ~~~---~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~-~----------------  220 (239)
                      ++.   .++++|.++....                        ..+.+.|.++|...-+... .                
T Consensus       283 ~~~~~~~~~~~~~~~~~~~------------------------~~~~~~l~~~gI~v~~g~~c~~~~~~~~~~~~~lg~~  338 (379)
T TIGR03402       283 DPTKRLPNTVNISFEYIEG------------------------EAILLLLDMEGICASSGSACTSGSLEPSHVLRAMGVP  338 (379)
T ss_pred             CCccCCCCEEEEEecCCCH------------------------HHHHHhhccCCEEEEchhhcCCCCCCcCHHHHHcCCC
Confidence            542   4689888865321                        1455566555544332210 0                


Q ss_pred             --CCEeEEEEEecCCCCCcC
Q 048438          221 --GGIYAIRFATGATLTEER  238 (239)
Q Consensus       221 --~g~~~lR~~~~~~~t~~~  238 (239)
                        .....+|+|++.++|++|
T Consensus       339 ~~~~~~~vR~S~~~~~t~~d  358 (379)
T TIGR03402       339 HTAAHGSIRFSLSRYNTEED  358 (379)
T ss_pred             hhhcCceEEEEcCCCCCHHH
Confidence              013589999999988765

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>PLN02409 serine--glyoxylate aminotransaminase

Probab=99.85  E-value=2e-20  Score=163.55  Aligned_cols=203  Identities=13%  Similarity=0.062  Sum_probs=138.9

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHH--HHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccce
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDV--AKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCC   81 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i--~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g   81 (239)
                      .+-+|++++.+|.||.+.|+++|+++  ||++|++++||++|+.+.++++     +..+ ++|++++++|||+++|.|+|
T Consensus       137 ~~k~v~~~~~~~~tG~~~~~~~i~~l~~~~~~g~~~vvD~v~s~g~~~id-----~~~~-~~D~~~~s~~K~l~~P~G~G  210 (401)
T PLN02409        137 KIKAVCVVHNETSTGVTNDLAGVRKLLDCAQHPALLLVDGVSSIGALDFR-----MDEW-GVDVALTGSQKALSLPTGLG  210 (401)
T ss_pred             CccEEEEEeecccccccCCHHHHHHHHhhhccCcEEEEEcccccCCcccc-----cccc-CccEEEEcCccccCcCCCcc
Confidence            46788899999999999999999999  9999999999999999888776     4444 39999999999999999999


Q ss_pred             EEEeeCcccccccccC--CCCccCCC---CceecCCC-CC-----ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Q 048438           82 CLWATNPEYLKNKATE--SKPVVDYK---DWQITLSR-SF-----RSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLV  150 (239)
Q Consensus        82 ~l~~~~~~~l~~~~~~--~~~~~~~~---~~~~~~~~-~~-----~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l  150 (239)
                      ++++++ +.+......  ...++++.   .+...+.+ .+     ..+++..+++.+...|++++.++..++++++++.|
T Consensus       211 ~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~~~~G~e~i~~~~~~l~~~l~~~L  289 (401)
T PLN02409        211 IVCASP-KALEASKTAKSPRVFFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENVIARHARLGEATRLAV  289 (401)
T ss_pred             eeEECH-HHHHHHhcCCCCCeecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            999853 333222110  01111110   00001111 11     12344456676667788999999999999999999


Q ss_pred             hCCCCeEEEcCC---Ce-eEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEEC-CEeE
Q 048438          151 SGDKRFEVVFPC---HF-AVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLG-GIYA  225 (239)
Q Consensus       151 ~~~~g~~~~~~~---~~-~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~-g~~~  225 (239)
                      ++. |++++.+.   .+ .+++|.++.. .               +       ...+.+.|.++..+.+...... +..+
T Consensus       290 ~~~-g~~~~~~~~~~~s~~v~~~~~p~~-~---------------~-------~~~l~~~l~~~~~i~i~~G~~~~~~~~  345 (401)
T PLN02409        290 EAW-GLKLCTKKPEWRSDTVTAVVVPEG-I---------------D-------SAEIVKNAWKKYNLSLGLGLNKVAGKV  345 (401)
T ss_pred             HHc-CCeeccCChhhcccceEEEeCCCC-C---------------C-------HHHHHHHHHHhCCEEEEcCCCcccCCE
Confidence            886 89988752   24 4666877532 1               0       1145555555545545433322 4568


Q ss_pred             EEEEecCCCCCc
Q 048438          226 IRFATGATLTEE  237 (239)
Q Consensus       226 lR~~~~~~~t~~  237 (239)
                      +|++.+.++|.+
T Consensus       346 ~Rig~~g~~~~~  357 (401)
T PLN02409        346 FRIGHLGNVNEL  357 (401)
T ss_pred             EEEcCCCCCCHH
Confidence            999999988654

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=99.85  E-value=8.2e-20  Score=158.09  Aligned_cols=203  Identities=16%  Similarity=0.185  Sum_probs=140.3

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL   83 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l   83 (239)
                      .+-+|++++.+|.+|.++|+++|.++|+++|+++|+|+||+.+..+.+     ...+ ++|++++++|||+++ .|+|++
T Consensus       139 ~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~-----~~~~-~~d~~~~s~~K~~~~-~g~g~~  211 (373)
T cd06453         139 RTKLVAVTHVSNVLGTINPVKEIGEIAHEAGVPVLVDGAQSAGHMPVD-----VQDL-GCDFLAFSGHKMLGP-TGIGVL  211 (373)
T ss_pred             CceEEEEeCcccccCCcCCHHHHHHHHHHcCCEEEEEhhhhcCceeee-----cccc-CCCEEEeccccccCC-CCcEEE
Confidence            356788899999999999999999999999999999999998877654     2233 499999999999876 789988


Q ss_pred             EeeCcccccccccC--CCCcc-----CCCCc-----eecCCCC--CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Q 048438           84 WATNPEYLKNKATE--SKPVV-----DYKDW-----QITLSRS--FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERL  149 (239)
Q Consensus        84 ~~~~~~~l~~~~~~--~~~~~-----~~~~~-----~~~~~~~--~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~  149 (239)
                      ++++ ..+......  .....     +...+     .+..+.+  ...++++.+++.+..++++++.++..++++++.+.
T Consensus       212 ~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~l~~~  290 (373)
T cd06453         212 YGKE-ELLEEMPPYGGGGEMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTAYALER  290 (373)
T ss_pred             EEch-HHhhcCCCeecCCCccccccccccccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence            8854 332222110  00000     00011     1111222  13466777788777778888888899999999999


Q ss_pred             HhCCCCeEEEcCC--CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEE--------
Q 048438          150 VSGDKRFEVVFPC--HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVV--------  219 (239)
Q Consensus       150 l~~~~g~~~~~~~--~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~--------  219 (239)
                      |+++++++++.++  ..++++|.++...                        ..++.+.|.++|..+.....        
T Consensus       291 l~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~i~~~l~~~gi~i~~g~~~~~~~~~~  346 (373)
T cd06453         291 LSEIPGVRVYGDAEDRAGVVSFNLEGIH------------------------PHDVATILDQYGIAVRAGHHCAQPLMRR  346 (373)
T ss_pred             HhcCCCeEEeCCccccCCeEEEEECCcC------------------------HHHHHHHHHHCCEEeccCccchhHHHHH
Confidence            9999899988543  4678889875421                        12566677666655432211        


Q ss_pred             ECCEeEEEEEecCCCCCcC
Q 048438          220 LGGIYAIRFATGATLTEER  238 (239)
Q Consensus       220 ~~g~~~lR~~~~~~~t~~~  238 (239)
                      ......+|++++.++|++|
T Consensus       347 ~~~~~~iRis~~~~~t~~d  365 (373)
T cd06453         347 LGVPGTVRASFGLYNTEEE  365 (373)
T ss_pred             hCCCCeEEEEecCCCCHHH
Confidence            1124589999998877654

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type

Probab=99.84  E-value=1.4e-19  Score=157.17  Aligned_cols=156  Identities=14%  Similarity=0.074  Sum_probs=112.2

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLW   84 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~   84 (239)
                      +-+|++++.+|.+|.+.|+++|.++|+++|+++|||++|+.+..+++     +..+ ++|++++++||| ++|.|+|+++
T Consensus       141 t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~~ivD~a~~~g~~~~~-----~~~~-~~D~~~~s~~K~-~gp~G~g~l~  213 (382)
T TIGR03403       141 TALVSVMWANNETGMIFPIKEIGEICKERGVLFHTDAVQAIGKIPVD-----VQKA-GVDFLSFSAHKF-HGPKGVGGLY  213 (382)
T ss_pred             CeEEEEEcccCCCccccCHHHHHHHHHHcCCEEEEechhhcCCCccC-----cccc-CCCEEEEcchhh-CCCCceEEEE
Confidence            46788899999999999999999999999999999999998887765     3333 499999999998 6799999999


Q ss_pred             eeCcccccccccCCCCccCCCCceecCCCC-CCh-HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcCC
Q 048438           85 ATNPEYLKNKATESKPVVDYKDWQITLSRS-FRS-LKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPC  162 (239)
Q Consensus        85 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~~  162 (239)
                      +++...+.+.... ....  .  ....+.. ..+ +.+..+++.+ .+.+++..++..++++++.+.|+++++++++.+.
T Consensus       214 vr~~~~~~p~~~g-~~~~--~--~~~~gt~~~~~~~al~~al~~~-~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~  287 (382)
T TIGR03403       214 IRKGVELTPLFHG-GEHM--G--GRRSGTLNVPYIVAMGEAMRLA-NEYLDFEKSHVRRLRDRLEDALLELPDVFVVGDR  287 (382)
T ss_pred             ECCCCCCCCcccC-CCCC--C--CcccCCcChHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHhcCCCEEEECCC
Confidence            9764322221100 0000  0  0111211 112 3444555543 3356777788899999999999999999998753


Q ss_pred             --C-eeEEEEEEcC
Q 048438          163 --H-FAVVCFRVSP  173 (239)
Q Consensus       163 --~-~~iv~f~~~~  173 (239)
                        . .++++|.+++
T Consensus       288 ~~~~~~~~~~~~~~  301 (382)
T TIGR03403       288 EHRVPNTILISIKG  301 (382)
T ss_pred             CCCcCCEEEEEeCC
Confidence              2 4688898865

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.

>PLN02724 Molybdenum cofactor sulfurase

Probab=99.84  E-value=3.5e-20  Score=174.12  Aligned_cols=164  Identities=13%  Similarity=0.005  Sum_probs=118.7

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHh--------CCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCC
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQF--------GIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFA   76 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~--------gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~   76 (239)
                      +-+|++++.+|.+|.+.|+++|..+++..        +++++|||||+++.++++     +..+. +|++++|+|||+++
T Consensus       193 t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~~g~~piD-----v~~~~-~Dfl~~S~HK~~Gg  266 (805)
T PLN02724        193 YNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDAAKGCGTSPPD-----LSRYP-ADFVVVSFYKIFGY  266 (805)
T ss_pred             cceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeehhhhcCCCCCC-----hhhcC-CCEEEEecceeccC
Confidence            35999999999999999999876655532        357999999999999988     55554 99999999999999


Q ss_pred             cccceEEEeeCcc--cccccccCCCCc---c---CC------CCceecCCCC--CChHHHHHHHHHhCHHHHHHHHHHHH
Q 048438           77 TLDCCCLWATNPE--YLKNKATESKPV---V---DY------KDWQITLSRS--FRSLKLWFVIRNYGMENLRHFLRSHV  140 (239)
Q Consensus        77 P~g~g~l~~~~~~--~l~~~~~~~~~~---~---~~------~~~~~~~~~~--~~~~~~~~~l~~~g~~g~~~~~~~~~  140 (239)
                      |.|+|+||+++..  .+.+.....+..   .   ++      .+..++.|+.  ...+++..+++.+...|++++.++..
T Consensus       267 P~G~G~L~vr~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~~l~~ig~~~I~~~~~  346 (805)
T PLN02724        267 PTGLGALLVRRDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFKLLNRLTISAIAMHTW  346 (805)
T ss_pred             CCCceEEEEehhhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHHHHHHhChHHHHHHHH
Confidence            9999999997531  122221111100   0   00      1123444444  23356666777665556778888888


Q ss_pred             HHHHHHHHHHhCCC------CeEEEcCC--------CeeEEEEEEcCC
Q 048438          141 NMARLFERLVSGDK------RFEVVFPC--------HFAVVCFRVSPL  174 (239)
Q Consensus       141 ~la~~l~~~l~~~~------g~~~~~~~--------~~~iv~f~~~~~  174 (239)
                      +|++++.+.|++++      +++++++.        +.+||+|.+.+.
T Consensus       347 ~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~  394 (805)
T PLN02724        347 ALTHYVANSLRNLKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRA  394 (805)
T ss_pred             HHHHHHHHHHHhccCCCCCeEEEEcCCCCCCCCcccccCEEEEEEEcC
Confidence            99999999999886      58888643        468999999874

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily

Probab=99.84  E-value=1.7e-19  Score=157.42  Aligned_cols=201  Identities=15%  Similarity=0.137  Sum_probs=133.6

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLW   84 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~   84 (239)
                      +-+|++++.+|.+|.+.|+++|+++||++|++++||+||+.+..+.+     +..+ ++|++++++|||++ |. +|+++
T Consensus       157 ~~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~~~-----~~~~-~~d~~~~s~~K~~g-~~-~G~l~  228 (397)
T TIGR01976       157 TRLVAVTAASNTLGSIVDLAAITELVHAAGALVVVDAVHYAPHGLID-----VQAT-GADFLTCSAYKFFG-PH-MGILW  228 (397)
T ss_pred             ceEEEEeCCCCCCCccCCHHHHHHHHHHcCCEEEEehhhhccccCCC-----HHHc-CCCEEEEechhhcC-Cc-eEEEE
Confidence            56888999999999999999999999999999999999987766554     3333 49999999999974 54 78888


Q ss_pred             eeCcccccccccCC-CCccCCCCceecCCCC-C-ChHHHHHHHHHhCHH--------------HHHHHHHHHHHHHHHHH
Q 048438           85 ATNPEYLKNKATES-KPVVDYKDWQITLSRS-F-RSLKLWFVIRNYGME--------------NLRHFLRSHVNMARLFE  147 (239)
Q Consensus        85 ~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~-~-~~~~~~~~l~~~g~~--------------g~~~~~~~~~~la~~l~  147 (239)
                      +++ +.+....... ..........++.|++ + ..+.+..+++.+...              .+++..++..++++++.
T Consensus       229 ~~~-~~~~~l~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  307 (397)
T TIGR01976       229 GRP-ELLMNLPPYKLTFSYDTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEYLL  307 (397)
T ss_pred             EcH-HHHhhCCCccccCccCCCcchhcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence            854 3332221110 0011111112233333 2 224444555444222              25677788889999999


Q ss_pred             HHHhCCCCeEEEcC----CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEE----
Q 048438          148 RLVSGDKRFEVVFP----CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVV----  219 (239)
Q Consensus       148 ~~l~~~~g~~~~~~----~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~----  219 (239)
                      +.|+++++++++.+    ..++++.|.+++..                        ...+.++|.++|........    
T Consensus       308 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~l~~~L~~~gI~v~~~~~~~~~  363 (397)
T TIGR01976       308 VGLSDLPGVTLYGVARLAARVPTVSFTVHGLP------------------------PQRVVRRLADQGIDAWAGHFYAVR  363 (397)
T ss_pred             HHHhcCCCEEEeCCCCccCCCceEEEEeCCcC------------------------HHHHHHHHHHCCeEEEeCccchHH
Confidence            99999878999865    25789998876421                        12566677666655432211    


Q ss_pred             -------ECCEeEEEEEecCCCCCcC
Q 048438          220 -------LGGIYAIRFATGATLTEER  238 (239)
Q Consensus       220 -------~~g~~~lR~~~~~~~t~~~  238 (239)
                             ..+..++|++++.++|++|
T Consensus       364 ~~~~~~~~~~~~~iRis~~~~~t~~d  389 (397)
T TIGR01976       364 LLRRLGLNDEGGVVRVGLAHYNTAEE  389 (397)
T ss_pred             HHHHhCCCCCCCeEEEEeeccCCHHH
Confidence                   1134689999999988764

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.

>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase

Probab=99.83  E-value=1.1e-19  Score=156.90  Aligned_cols=203  Identities=11%  Similarity=0.051  Sum_probs=135.6

Q ss_pred             EEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEEe
Q 048438            6 LFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWA   85 (239)
Q Consensus         6 ~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~   85 (239)
                      .+|++++.+|.+|.+.|+++|+++||++|++++||++|+.|..+++     +..+ ++|++++++|||+++|.|+|++++
T Consensus       131 ~~v~~~~~~~~tG~~~~i~~I~~l~~~~g~~livD~~~~~g~~~~~-----~~~~-~~D~~~~s~~K~l~~p~G~G~l~~  204 (363)
T TIGR02326       131 THIALVHCETTTGILNPIEAVAKLAHRHGKVTIVDAMSSFGGIPID-----IAEL-HIDYLISSANKCIQGVPGFGFVIA  204 (363)
T ss_pred             cEEEEEeecCCccccCcHHHHHHHHHHcCCEEEEEccccccCcccc-----hhhc-CccEEEecCccccccCCcceEEEE
Confidence            4677888999999999999999999999999999999998887766     4444 399999999999999999999998


Q ss_pred             eCccccccccc-CCCCccCCC-C---ce-ecCCCCCC-----hHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHhCC
Q 048438           86 TNPEYLKNKAT-ESKPVVDYK-D---WQ-ITLSRSFR-----SLKLWFVIRNYGME-NLRHFLRSHVNMARLFERLVSGD  153 (239)
Q Consensus        86 ~~~~~l~~~~~-~~~~~~~~~-~---~~-~~~~~~~~-----~~~~~~~l~~~g~~-g~~~~~~~~~~la~~l~~~l~~~  153 (239)
                      +.. .+..... ..+...+.. .   .. ..+.++|.     .+++..+++.+..+ +++++.++..++++++++.|++.
T Consensus       205 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~~  283 (363)
T TIGR02326       205 RQA-ELAACKGNARSLSLDLYDQWRCMEDNHGKWRFTSPTHVVHAFAQALLELEKEGGVAARHQRYQQNQKTLVAGMRAL  283 (363)
T ss_pred             CHH-HHHHhhcCCCceeecHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc
Confidence            543 2222110 000111100 0   00 01112222     24445556665444 47788889999999999999887


Q ss_pred             CCeEEEcCC--CeeE-EEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEe
Q 048438          154 KRFEVVFPC--HFAV-VCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFAT  230 (239)
Q Consensus       154 ~g~~~~~~~--~~~i-v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~  230 (239)
                       |++++.++  ++++ ++|++++...                     .....+.+.|.++|..+.+.... +...+|+++
T Consensus       284 -g~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~v~~~L~~~gi~v~~g~~~-~~~~iRi~~  340 (363)
T TIGR02326       284 -GFEPLLDDEIQSPIITSFYSPEDPD---------------------YRFADFYQRLKEQGFVIYPGKVS-QVDCFRIGN  340 (363)
T ss_pred             -CCeeccCcccCCceEEEEECCCCCC---------------------CCHHHHHHHHHHCCEEEECCcCC-CCCEEEEec
Confidence             88887653  4554 5677764210                     00125666777676654433222 346899998


Q ss_pred             cCCCCCcC
Q 048438          231 GATLTEER  238 (239)
Q Consensus       231 ~~~~t~~~  238 (239)
                      +..+|.+|
T Consensus       341 ~~~~~~ed  348 (363)
T TIGR02326       341 IGEVDAAD  348 (363)
T ss_pred             CCCCCHHH
Confidence            88776553

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.

>KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism]

Probab=99.83  E-value=4.1e-19  Score=150.90  Aligned_cols=203  Identities=20%  Similarity=0.204  Sum_probs=156.2

Q ss_pred             CccEEEEEecCCCCcccccChhHHHHHHHH-hCCEEEEecccccccccCccc-c-cccCCCCCcceEEEcCcccCCCccc
Q 048438            3 LIPLFLCATIGTTAITAVDPLKPLCDVAKQ-FGIWVHVDAAYAGSACIFPEF-R-HFIDGVEGADSFSLNAHKWFFATLD   79 (239)
Q Consensus         3 ~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~-~gi~lhvD~A~~~~~~~~~~~-~-~~~~~~~~~Ds~~~~~hK~l~~P~g   79 (239)
                      ...+.|+++++++.+|.++|+++|.++.-+ +++.+|||+|-|++.++.-.+ . .+..+..++-|++.+.||..++|.|
T Consensus       217 eNti~lv~~~~~~p~G~~e~ve~l~~l~~e~w~ipiHvDa~~GgFi~p~~~~~~~~fdFr~p~V~Sisa~~HKYGl~~~G  296 (491)
T KOG1383|consen  217 ENTIMLVGSLPNFPTGEIEDVEKLADLLLEIWDIPIHVDACLGGFINPAGYLNEEEFDFRVPGVTSISADGHKYGLAPAG  296 (491)
T ss_pred             cceEEEEEEcCCCCccchhhHHHHHHHHHHHhCCceeecccCccccccccccCccccccCCCCceeEeeccceeeeeecC
Confidence            356889999999999999999999999999 999999999999988762111 1 2234456799999999999999999


Q ss_pred             ceEEEeeCccccccccc---CCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 048438           80 CCCLWATNPEYLKNKAT---ESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKR  155 (239)
Q Consensus        80 ~g~l~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g  155 (239)
                      .+.++.++.+++.....   ++.+ -.+...++.+||. +..++.|+++-.+|.+|+.+..+++.+.++++++.|+++++
T Consensus       297 ~~~vl~r~k~~~~~q~~~~~~w~G-g~y~s~TlngSR~g~~va~~wa~~~~lG~eGY~~~~~~ive~~~~l~egie~i~~  375 (491)
T KOG1383|consen  297 SSWVLYRNKELLPHQLFFHTDWLG-GIYASPTLNGSRPGSQVAAQWAALMSLGEEGYRENTQNIVETARKLREGIENIKG  375 (491)
T ss_pred             cEEEEEcccccccceEEEeccccC-ccccCcccccCCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence            99999987766544321   1111 1123457777887 56688999999999999999999999999999999999999


Q ss_pred             eEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECC--EeEEEEEe
Q 048438          156 FEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGG--IYAIRFAT  230 (239)
Q Consensus       156 ~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g--~~~lR~~~  230 (239)
                      +.++++|...++.|.-...                      +.+  ++.+.|...|+.+-..+...+  ..++|+.+
T Consensus       376 i~i~gkp~vs~~~~~s~~~----------------------~i~--elsd~l~~~GW~lnalq~P~a~Hi~vt~~~~  428 (491)
T KOG1383|consen  376 IKIVGKPLVSFILFGSNDV----------------------NIF--ELSDLLRKKGWILNALQFPAAIHICVTRVHA  428 (491)
T ss_pred             ceecCCCcEEEEEccCCcc----------------------chh--hhhHHHHhcCcCccccCCCCceEEEEEeeec
Confidence            9999987655554443221                      222  777888889998887776653  34556553

>TIGR02006 IscS cysteine desulfurase IscS

Probab=99.82  E-value=2.5e-19  Score=156.76  Aligned_cols=146  Identities=10%  Similarity=0.098  Sum_probs=105.8

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLW   84 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~   84 (239)
                      +.+|++++.+|.+|.+.|+++|+++||++|+++|||++|+.+..+++     +.++ ++|++++++||+ ++|.|+|+++
T Consensus       143 ~~lv~v~~~~n~tG~~~~~~~I~~l~~~~g~~livD~a~a~g~~~~~-----~~~~-~~D~~~~s~~K~-~gp~G~G~l~  215 (402)
T TIGR02006       143 TILVSIMHVNNEIGVIQDIAAIGEICRERKVFFHVDAAQSVGKIPIN-----VNEL-KVDLMSISGHKI-YGPKGIGALY  215 (402)
T ss_pred             CEEEEEECCCcCceecccHHHHHHHHHHcCCEEEEEcchhcCCcccC-----cccc-CCCEEEEehhhh-cCCCceEEEE
Confidence            56888999999999999999999999999999999999999988776     4444 499999999996 5699999999


Q ss_pred             eeCcccccccccCCCCccCCCCceecCCCC--CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcC
Q 048438           85 ATNPEYLKNKATESKPVVDYKDWQITLSRS--FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFP  161 (239)
Q Consensus        85 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~  161 (239)
                      +++...........++.   ....++.++.  ...+++..+++.+. ++++++.++..++++++.+.|+++++++++.+
T Consensus       216 ~~~~~~~~~~~~~~g~~---~~~~~~~gt~~~~~~~al~~al~~~~-~~~~~~~~~~~~l~~~l~~~l~~~~~v~~~~~  290 (402)
T TIGR02006       216 VRRKPRVRLEALIHGGG---HERGMRSGTLPTHQIVGMGEAFRIAK-EEMAQDTAHVLALRDRLLNGIKSIEEVYLNGD  290 (402)
T ss_pred             EccCCCCCCCceecCCC---ccCCccCCCccHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCC
Confidence            97532221110000000   0011222222  12234445555543 46778888999999999999999889988764

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=99.82  E-value=2.1e-19  Score=152.96  Aligned_cols=198  Identities=15%  Similarity=0.081  Sum_probs=139.1

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLW   84 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~   84 (239)
                      .-+|.++|+.|+||.++|+++|+++||+||..++||+.-+.|..+++     ++.| ++|.+..+++|+|++|+|.|++.
T Consensus       132 ~~~V~~vH~ETSTGvlnpl~~I~~~~k~~g~l~iVDaVsS~Gg~~~~-----vd~w-giDv~itgSQK~l~~PPGla~v~  205 (383)
T COG0075         132 IKAVAVVHNETSTGVLNPLKEIAKAAKEHGALLIVDAVSSLGGEPLK-----VDEW-GIDVAITGSQKALGAPPGLAFVA  205 (383)
T ss_pred             ccEEEEEeccCcccccCcHHHHHHHHHHcCCEEEEEecccCCCcccc-----hhhc-CccEEEecCchhccCCCccceeE
Confidence            34899999999999999999999999999999999998888877776     5556 49999999999999999999999


Q ss_pred             eeCccc--ccccccCCCCccCCCCceec----CCCCCC-----hHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC
Q 048438           85 ATNPEY--LKNKATESKPVVDYKDWQIT----LSRSFR-----SLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD  153 (239)
Q Consensus        85 ~~~~~~--l~~~~~~~~~~~~~~~~~~~----~~~~~~-----~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~  153 (239)
                      +++..+  +..... .+.++|+..|.-.    ...++.     .+++..+++.+-.+|++++.+++.++++++++.+.++
T Consensus       206 ~S~~a~e~~~~~~~-~~~ylDL~~~~~~~~~~~~~p~Tppv~~i~aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~al  284 (383)
T COG0075         206 VSERALEAIEERKH-PSFYLDLKKWLKYMEKKGSTPYTPPVNLIYALREALDLILEEGLEARIARHRRLAEALRAGLEAL  284 (383)
T ss_pred             ECHHHHHHHhcCCC-CceeecHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc
Confidence            964321  111111 1234443221111    122221     2556667888888999999999999999999999997


Q ss_pred             CCeEEEcCC--Cee-EEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEE-EEEEECCEeEEEEE
Q 048438          154 KRFEVVFPC--HFA-VVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYM-TNVVLGGIYAIRFA  229 (239)
Q Consensus       154 ~g~~~~~~~--~~~-iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~-~~~~~~g~~~lR~~  229 (239)
                       |++++.++  .++ +++|..+. +...                  .    .+...+.+++.+.+ .........++|+.
T Consensus       285 -Gl~~~~~~~~~s~tvta~~~P~-g~~~------------------~----~~~~~~~~~~g~~i~gg~~~l~gkifRIG  340 (383)
T COG0075         285 -GLELFADPERRSPTVTAIKVPE-GVDD------------------K----KVRRALLKEYGVEIAGGQGPLKGKIFRIG  340 (383)
T ss_pred             -CCccccCcccCCCceEEEECCC-CCCc------------------H----HHHHHHHHhCCEEecccccccCccEEEEe
Confidence             99998743  344 55555543 3210                  1    22224555544444 44444445689999


Q ss_pred             ecCC
Q 048438          230 TGAT  233 (239)
Q Consensus       230 ~~~~  233 (239)
                      .|..
T Consensus       341 hMG~  344 (383)
T COG0075         341 HMGN  344 (383)
T ss_pred             cCcc
Confidence            8873

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=99.80  E-value=4.9e-18  Score=147.86  Aligned_cols=204  Identities=18%  Similarity=0.121  Sum_probs=129.9

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL   83 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l   83 (239)
                      .|-+|++++.++.+|.+.|+++|+++||++|+++|||+||+.|.++++     ...+ ++|++++++|||+++|.|+|++
T Consensus       158 ~~~lV~l~~~~~~tG~~~~l~~I~~la~~~g~~livD~a~~~g~~~~~-----~~~~-g~D~~~~s~~K~l~~~~~~G~l  231 (387)
T PRK09331        158 PPALALLTHVDGNYGNLADAKKVAKVAHEYGIPFLLNGAYTVGRMPVD-----GKKL-GADFIVGSGHKSMAASAPSGVL  231 (387)
T ss_pred             CCEEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCcccCCcCCC-----HHHc-CCCEEEeeCcccccCCCCEEEE
Confidence            577888999999999999999999999999999999999999987765     2223 4999999999999999999998


Q ss_pred             EeeCcccccccccCCCCccCCCCce-ecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcC
Q 048438           84 WATNPEYLKNKATESKPVVDYKDWQ-ITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFP  161 (239)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~  161 (239)
                      +++ ++++........ .+...... +..+.+ ..++.++.++..+- +. .++.++.+++++++++.|++++|++++.+
T Consensus       232 ~~~-~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~aal~~~~-~~-~~~~~~~~~~~~~l~~~L~~l~g~~~~~~  307 (387)
T PRK09331        232 ATT-EEYADKVFRTSR-KFGVKEVELLGCTLRGAPLVTLMASFPHVV-ER-VKRWDEEVKKARWFVDELEKIEGFKQLGE  307 (387)
T ss_pred             EEC-HHHHhhcccccC-CCcccceeeeceecCchHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHhcCCCEEEecc
Confidence            875 344433221100 01100001 111111 22344444444321 11 24566678899999999999999999853


Q ss_pred             --CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCC
Q 048438          162 --CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTE  236 (239)
Q Consensus       162 --~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~  236 (239)
                        ...+++.|..+....               ...........+.+.|.++|....   ......++|+..+. +|.
T Consensus       308 ~~~~~~i~~~~~~~~~~---------------~~~~~~~~~~~~~~~L~~~gI~~~---~~~~~~i~ri~~~g-~t~  365 (387)
T PRK09331        308 KPRNHDLMKFETPSFDE---------------IAKKHKRRGFFLYEELKKRGIHGI---KPGATKEFKLSTYG-LTW  365 (387)
T ss_pred             CcCcCCeEEEeCCchhH---------------HhhhccccchhHHHHHHHcCceEE---ccCCceEEEEEecc-CCH
Confidence              346777777652100               000001112357778877766522   12334677777655 443

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA

Probab=99.79  E-value=7.9e-18  Score=144.77  Aligned_cols=159  Identities=10%  Similarity=0.045  Sum_probs=114.5

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL   83 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l   83 (239)
                      .+.+|++++.+|.+|.+.|+++|+++|+++|+++|||+||+.+..+++     +..+ ++|++++++||| ++|.|+|++
T Consensus       138 ~~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~~ivD~a~~~g~~~~~-----~~~~-~~D~~~~s~~K~-~gp~g~g~l  210 (353)
T TIGR03235       138 DTLLVSIMHVNNETGSIQPIREIAEVLEAHEAFFHVDAAQVVGKITVD-----LSAD-RIDLISCSGHKI-YGPKGIGAL  210 (353)
T ss_pred             CCEEEEEEcccCCceeccCHHHHHHHHHHcCCEEEEEchhhcCCcccc-----cccc-CCCEEEeehhhc-CCCCceEEE
Confidence            357888999999999999999999999999999999999999988776     3333 499999999999 579999999


Q ss_pred             EeeCcccccccccCCCCccCC-CCceecCCCC--CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc
Q 048438           84 WATNPEYLKNKATESKPVVDY-KDWQITLSRS--FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF  160 (239)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~  160 (239)
                      ++++. .+...... ....+. ....++.++.  ...+++..+++.+ .++.+++.++..++++++++.|++ +|++++.
T Consensus       211 ~~~~~-~~~~~~~~-~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~-~~~~~~~~~~~~~l~~~l~~~l~~-~g~~~~~  286 (353)
T TIGR03235       211 VIRKR-GKPKAPLK-PIMFGGGQERGLRPGTLPVHLIVGMGEAAEIA-RRNAQAWEVKLRAMRNQLRDALQT-LGVKLNG  286 (353)
T ss_pred             EEccC-cccccccC-ceeeCCCCcCccccCCCChHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHhcc-CCeEEeC
Confidence            99754 22111000 000100 0011222222  1224455556654 357788889999999999999988 7999986


Q ss_pred             CC---CeeEEEEEEcC
Q 048438          161 PC---HFAVVCFRVSP  173 (239)
Q Consensus       161 ~~---~~~iv~f~~~~  173 (239)
                      ++   ...+++|.+++
T Consensus       287 ~~~~~~~~i~~~~~~~  302 (353)
T TIGR03235       287 DPAETIPHILNFSIDG  302 (353)
T ss_pred             CcccccCCEEEEEeCC
Confidence            54   24689998764

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=99.79  E-value=2.8e-18  Score=147.60  Aligned_cols=204  Identities=15%  Similarity=0.028  Sum_probs=134.1

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL   83 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l   83 (239)
                      .|-+|++++.+|.+|.+.|+++|+++|+++|+++++|++|+.|..+++     .... ++|+++.++|||+++|.|+|++
T Consensus       124 ~~~~v~i~~~~~~~G~~~~~~~i~~~a~~~~~~li~D~~~~~g~~~~~-----~~~~-~~d~~~~s~~K~l~~p~g~G~l  197 (356)
T cd06451         124 DIKAVTLTHNETSTGVLNPLEGIGALAKKHDALLIVDAVSSLGGEPFR-----MDEW-GVDVAYTGSQKALGAPPGLGPI  197 (356)
T ss_pred             CCCEEEEeccCCCcccccCHHHHHHHHHhcCCEEEEeeehhccCcccc-----cccc-CccEEEecCchhccCCCCccee
Confidence            466788888899999999999999999999999999999988766554     2222 4899999999999999999999


Q ss_pred             EeeCccccccccc---CCCCccC------CCCce-ecCCCC-C-ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHh
Q 048438           84 WATNPEYLKNKAT---ESKPVVD------YKDWQ-ITLSRS-F-RSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVS  151 (239)
Q Consensus        84 ~~~~~~~l~~~~~---~~~~~~~------~~~~~-~~~~~~-~-~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~  151 (239)
                      ++++ +++.....   ....+.+      +.... ...+.. . ....+..+++.+...+++++.++..++++++.+.|.
T Consensus       198 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~  276 (356)
T cd06451         198 AFSE-RALERIKKKTKPKGFYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLILEEGLENRWARHRRLAKALREGLE  276 (356)
T ss_pred             EECH-HHHHHHHhcCCCCceeecHHHHHhhhcccCCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            9864 33322211   0000010      00000 111111 1 123445666766667888889999999999999999


Q ss_pred             CCCCeEEEcCC--CeeEE-EEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEE-EECCEeEEE
Q 048438          152 GDKRFEVVFPC--HFAVV-CFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNV-VLGGIYAIR  227 (239)
Q Consensus       152 ~~~g~~~~~~~--~~~iv-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-~~~g~~~lR  227 (239)
                      +. |++++.++  ..+++ .+++++. .                    +  ...+.+.|.++..+++.+. ......++|
T Consensus       277 ~~-g~~~~~~~~~~~~~~~~~~~~~~-~--------------------~--~~~~~~~L~~~~gI~~~~g~~~~~~~~iR  332 (356)
T cd06451         277 AL-GLKLLAKPELRSPTVTAVLVPEG-V--------------------D--GDEVVRRLMKRYNIEIAGGLGPTAGKVFR  332 (356)
T ss_pred             Hc-CCeeccCcccCCCceEEEECCCC-C--------------------C--HHHHHHHHHHhCCEEEecccccccCCEEE
Confidence            86 88887643  24554 3444321 1                    0  1256677777734444322 111235999


Q ss_pred             EEecCCCCCcC
Q 048438          228 FATGATLTEER  238 (239)
Q Consensus       228 ~~~~~~~t~~~  238 (239)
                      ++++..+|++|
T Consensus       333 is~~~~~~~e~  343 (356)
T cd06451         333 IGHMGEATRED  343 (356)
T ss_pred             EecCCCCCHHH
Confidence            99988877654

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.78  E-value=9.6e-18  Score=156.46  Aligned_cols=201  Identities=17%  Similarity=0.160  Sum_probs=140.0

Q ss_pred             CCccEEEEEecCCCCcccccC-hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc-
Q 048438            2 GLIPLFLCATIGTTAITAVDP-LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD-   79 (239)
Q Consensus         2 g~~p~~vv~t~gtt~~G~i~p-l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g-   79 (239)
                      |..+.+|++|+++| +|.++| +++|+++||++|.+++||||+..+.......     +-.++|++++|.||+|++|.| 
T Consensus       626 ~~~taaV~iT~pst-~G~~e~~I~eI~~iah~~G~~v~VDgAq~~al~~l~~P-----g~~GaDi~~~s~HKtf~~P~G~  699 (939)
T TIGR00461       626 GDELAAVMVTYPST-HGVFEPTIQHACDIVHSFGGQVYLDGANMNAQVGLTSP-----GDLGADVCHLNLHKTFCIPHGG  699 (939)
T ss_pred             CCceEEEEEEeCCc-CceecccHHHHHHHHHHcCCEEEEEecChhhCCCCCCc-----cccCCCEEEecCCccCCCCCCC
Confidence            45788999999999 799987 9999999999999999999997654444311     222599999999999995554 


Q ss_pred             ----ceEEEeeCcccccccccCCC--CccCC--CC--ceecCCCCCCh----HHHHHHHHHhCHHHHHHHHHHHHHHHHH
Q 048438           80 ----CCCLWATNPEYLKNKATESK--PVVDY--KD--WQITLSRSFRS----LKLWFVIRNYGMENLRHFLRSHVNMARL  145 (239)
Q Consensus        80 ----~g~l~~~~~~~l~~~~~~~~--~~~~~--~~--~~~~~~~~~~~----~~~~~~l~~~g~~g~~~~~~~~~~la~~  145 (239)
                          +|++.++..  +.+..+...  ...+.  .+  .....++.+++    +..|..++.+|.+|+++..+....+|+|
T Consensus       700 GGPg~G~i~vr~~--L~~~lPg~~v~~t~d~~greq~Iga~s~~~~g~a~~~l~a~~yi~~lG~~GL~~~a~~ailnAnY  777 (939)
T TIGR00461       700 GGPGMGPIGVKSH--LIPFLPKHDVVSMITGIGGSKSIGSVSAAPYGSASILPISWMYIKMMGNEGLPKASVVAILNANY  777 (939)
T ss_pred             CCCCeEEEEEhhh--chhhcCCCcccccccCCCCccccccccccccCcHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Confidence                599999752  222111100  00010  01  11222334444    7889999999999999999999999999


Q ss_pred             HHHHHhCCCCeEEEcCC----CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEE-EE
Q 048438          146 FERLVSGDKRFEVVFPC----HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNV-VL  220 (239)
Q Consensus       146 l~~~l~~~~g~~~~~~~----~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-~~  220 (239)
                      +.++|++  +++++.+.    ..+-++|++++..                  ++.+..+..+.++|.+.|....+.. ..
T Consensus       778 l~~rL~~--~~~~l~~~~~~~~~hEfv~~~~~~~------------------~~~g~~~~dIakrL~d~G~hapt~~~pv  837 (939)
T TIGR00461       778 MATRLKD--HYPILFVGTLKHVAHECILDLRPLK------------------AKTGIEAIDVAKRLQDYGFHAPTLSFPV  837 (939)
T ss_pred             HHHHhhc--cCcccccCCCCceeEEEEEeccchh------------------hhcCCCHHHHHHHHHhCCeeccccCCcc
Confidence            9999987  66776653    3445777776421                  1113445678889998888755433 34


Q ss_pred             CCEeEEEEEe
Q 048438          221 GGIYAIRFAT  230 (239)
Q Consensus       221 ~g~~~lR~~~  230 (239)
                      .|..++|.+-
T Consensus       838 ~g~lmiepTE  847 (939)
T TIGR00461       838 PGTLMVEPTE  847 (939)
T ss_pred             CCeEEEEeec
Confidence            5677888775

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>PRK13580 serine hydroxymethyltransferase; Provisional

Probab=99.78  E-value=3.7e-18  Score=149.83  Aligned_cols=198  Identities=17%  Similarity=0.095  Sum_probs=127.4

Q ss_pred             CccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceE
Q 048438            3 LIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCC   82 (239)
Q Consensus         3 ~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~   82 (239)
                      ++|.++ +++.++. |...|+++|.++|+++|++++||+||+.|.+.............++|++++++||+|++|.| |+
T Consensus       219 ~~plvi-i~g~S~~-~~~~dl~~i~eia~~~gA~L~VD~AH~~Gligg~~~~~~~~~~~~~D~vtgT~hKaL~GP~G-G~  295 (493)
T PRK13580        219 FKPLIL-VAGYSAY-PRRVNFAKLREIADEVGAVLMVDMAHFAGLVAGKVFTGDEDPVPHADIVTTTTHKTLRGPRG-GL  295 (493)
T ss_pred             cCCEEE-EeCcccc-CCCcCHHHHHHHHHHcCCEEEEECchhhceeccccchhhcCCCCCCcEEEeCChhhccCCCe-EE
Confidence            356554 4577776 55779999999999999999999999999887543221112234699999999999999996 77


Q ss_pred             EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc-C
Q 048438           83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF-P  161 (239)
Q Consensus        83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~-~  161 (239)
                      +++++ ++........       ++.+.+.-....++...++..+....+.++.++..+++++|++.|.+. |++++. .
T Consensus       296 I~~~~-~l~~~L~~a~-------P~i~gg~l~p~iAA~avAl~e~~~~ef~~y~~~l~~Na~~La~~L~~~-G~~vv~gg  366 (493)
T PRK13580        296 VLAKK-EYADAVDKGC-------PLVLGGPLPHVMAAKAVALAEARTPEFQKYAQQVVDNARALAEGFLKR-GARLVTGG  366 (493)
T ss_pred             EEecH-HHHHHHhhCC-------CcccCCCccHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhc-CCCccCCC
Confidence            77754 3322221100       111111111122233334444432344667888889999999999986 998874 3


Q ss_pred             CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHH-HHHHHHHHhcCcEEE---EEEEECC---EeEEEEEecCCC
Q 048438          162 CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFN-RELLESINASGKAYM---TNVVLGG---IYAIRFATGATL  234 (239)
Q Consensus       162 ~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~g~~~~---~~~~~~g---~~~lR~~~~~~~  234 (239)
                      .+++||.+.+.+.                       ... ..+.+.|.+.|.+.-   .+++..+   ...||++++...
T Consensus       367 TdshIV~V~lg~~-----------------------~~~g~~a~~~L~e~GI~vn~i~~Ptvp~g~~~~srLRIg~~A~t  423 (493)
T PRK13580        367 TDNHLVLIDVTSF-----------------------GLTGRQAESALLDAGIVTNRNSIPSDPNGAWYTSGIRLGTPALT  423 (493)
T ss_pred             CCCCEEEEEeCCH-----------------------HHHHHHHHHHHHHCCeEEccccCCCCCCCCCCCceEEeccchhh
Confidence            5678999998652                       222 244556777776532   2344455   678999977755


Q ss_pred             C
Q 048438          235 T  235 (239)
Q Consensus       235 t  235 (239)
                      |
T Consensus       424 t  424 (493)
T PRK13580        424 T  424 (493)
T ss_pred             h
Confidence            4

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=99.78  E-value=6.3e-18  Score=147.52  Aligned_cols=203  Identities=16%  Similarity=0.089  Sum_probs=128.6

Q ss_pred             cEEEEEecCCCCcccccCh-hHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcc-----
Q 048438            5 PLFLCATIGTTAITAVDPL-KPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATL-----   78 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl-~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~-----   78 (239)
                      +.+|++++.+ .+|.+.|+ ++|+++|++||+++++|++|+.+..+.+.     ..+ ++|++++++|||+ .|.     
T Consensus       160 t~~viv~~~~-~~G~~~~~l~~i~~la~~~g~~livD~~~~~~~~~~~~-----~~~-~~d~~~~s~~K~~-~p~g~Ggp  231 (398)
T cd00613         160 VAALMVQYPN-TLGVFEDLIKEIADIAHSAGALVYVDGDNLNLTGLKPP-----GEY-GADIVVGNLQKTG-VPHGGGGP  231 (398)
T ss_pred             eEEEEEECCC-CCceecchHHHHHHHHHhcCCEEEEEeccccccCCCCh-----HHc-CCCEEEeeccccC-CCCCCCCC
Confidence            5567777765 68999985 99999999999999999999876544431     112 4999999999998 664     


Q ss_pred             cceEEEeeCcccccccccC---CC--------CccCCCC----ceecCCCC-------CChHHHHHHHHHhCHHHHHHHH
Q 048438           79 DCCCLWATNPEYLKNKATE---SK--------PVVDYKD----WQITLSRS-------FRSLKLWFVIRNYGMENLRHFL  136 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~---~~--------~~~~~~~----~~~~~~~~-------~~~~~~~~~l~~~g~~g~~~~~  136 (239)
                      ++|++++++ .++......   ..        ..++...    ...+.++.       ..+...+..+..++.++++++.
T Consensus       232 ~~g~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~~~~  310 (398)
T cd00613         232 GAGFFAVKK-ELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVYLGPEGLKEIA  310 (398)
T ss_pred             ceeEEEEhh-hhHhhCCCCeeccccccCCCcceEEecccchhhcccccccccceecHHHHHHHHHHHHHHhCHHHHHHHH
Confidence            467888753 333221100   00        0000000    00111111       1123344556777888999999


Q ss_pred             HHHHHHHHHHHHHHhCCCCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEE
Q 048438          137 RSHVNMARLFERLVSGDKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMT  216 (239)
Q Consensus       137 ~~~~~la~~l~~~l~~~~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~  216 (239)
                      ++..++++++.+.|+++++......+..++++|+++...                     ......+.++|.++|... .
T Consensus       311 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~~~~~~---------------------~~~~~~~~~~L~~~gi~~-~  368 (398)
T cd00613         311 ERAHLNANYLAKRLKEVGGVLPFNGPFFHEFVLRLPPLY---------------------GIRAEDLAKALIDGGFHA-P  368 (398)
T ss_pred             HHHHHHHHHHHHHHHhcCCcccCCCCeeEEEEEEcCCcc---------------------hHHHHHHHHhhhhcCccc-c
Confidence            999999999999999875544222344567778775310                     011235666677666543 2


Q ss_pred             EEEECCEeEEEEEecCCCCCcC
Q 048438          217 NVVLGGIYAIRFATGATLTEER  238 (239)
Q Consensus       217 ~~~~~g~~~lR~~~~~~~t~~~  238 (239)
                      ...+.+...+|++++.++|.+|
T Consensus       369 ~~~~~~~~~lRis~~~~~t~ed  390 (398)
T cd00613         369 TMYLPVDGTLMIEPTETETKEE  390 (398)
T ss_pred             ccccCCCCeEEEEcCCCCCHHH
Confidence            2223456789999998888764

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>TIGR01364 serC_1 phosphoserine aminotransferase

Probab=99.78  E-value=1.8e-18  Score=148.39  Aligned_cols=195  Identities=10%  Similarity=0.030  Sum_probs=134.7

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL   83 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l   83 (239)
                      .+-+|.+|+.+|+||...|     ++++.+++.++|||+++++..+++     ++.   .|++++++||+++ |.|.|++
T Consensus       130 ~~~~v~~th~ETstGv~~~-----~l~~~~~~l~iVDavss~g~~~id-----~~~---~d~~~~ssqK~lg-P~Glg~l  195 (349)
T TIGR01364       130 DAAYVHYCANETIHGVEFR-----ELPDVKNAPLVADMSSNILSRPID-----VSK---FGLIYAGAQKNIG-PAGLTVV  195 (349)
T ss_pred             CCCEEEEcCCCCcccEecc-----eecccCCCeEEEEccccccCccCC-----HHH---ccEEEEecccccC-CCceEEE
Confidence            3558999999999999987     667778999999999999999987     443   6799999999975 9999999


Q ss_pred             EeeCcccccccccCCCCccCCCCc---eecCCCC--CChHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438           84 WATNPEYLKNKATESKPVVDYKDW---QITLSRS--FRSLKLWFVIRNYGME-NLRHFLRSHVNMARLFERLVSGDKRFE  157 (239)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~l~~~g~~-g~~~~~~~~~~la~~l~~~l~~~~g~~  157 (239)
                      ++++ ..+....+....+.++...   ....+++  ...+++..+++.+..+ |++++.+++.++++++++.|++++|+.
T Consensus       196 ~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~gl~  274 (349)
T TIGR01364       196 IVRK-DLLGRASRITPSMLNYKIHAENDSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDNSNGFY  274 (349)
T ss_pred             EECH-HHHhhcccCCCCcchHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCee
Confidence            9964 3332221111111111100   0001222  2235566678888777 699999999999999999999998876


Q ss_pred             EEcC-C--Ce-eEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCC
Q 048438          158 VVFP-C--HF-AVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGAT  233 (239)
Q Consensus       158 ~~~~-~--~~-~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~  233 (239)
                      .... +  ++ .+++|.+++.                       .+...+++.+.++|.........  ...+|+|++.+
T Consensus       275 ~~~~~~~~rs~~v~sf~~~~~-----------------------~~~~~~~~~~~~~Gi~~~~~~~~--~g~vRvS~~~~  329 (349)
T TIGR01364       275 RNPVDPRNRSRMNVVFTLGNE-----------------------ELEKRFLKEAEERGLVSLKGHRS--VGGMRASIYNA  329 (349)
T ss_pred             ccCCCHHHcCCeEEEEecCCh-----------------------hHhHHHHHHHHHCCCcccCCccc--cCeeEEECcCC
Confidence            5532 1  34 5688987652                       11235556677778733322221  24899999999


Q ss_pred             CCCcC
Q 048438          234 LTEER  238 (239)
Q Consensus       234 ~t~~~  238 (239)
                      +|.+|
T Consensus       330 nt~ed  334 (349)
T TIGR01364       330 MPLEG  334 (349)
T ss_pred             CCHHH
Confidence            98765

This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).

>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional

Probab=99.78  E-value=1.2e-18  Score=150.03  Aligned_cols=193  Identities=11%  Similarity=0.050  Sum_probs=133.9

Q ss_pred             cEEEEEecCCCCccccc-ChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438            5 PLFLCATIGTTAITAVD-PLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL   83 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~-pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l   83 (239)
                      |-+|.+|+.+|.||.++ ||++|      +|++++|||+++++..+++     ++.   .|++++++||+++ |.|.|++
T Consensus       142 ~~~V~~th~eTstGv~~~~i~~i------~g~l~vVDavss~g~~~id-----v~~---~d~~~~ssqK~lg-P~Glg~l  206 (360)
T PRK05355        142 AAYVHYTSNETIDGTEFHELPDT------GDVPLVADMSSDILSRPID-----VSK---FGLIYAGAQKNIG-PAGLTIV  206 (360)
T ss_pred             CCEEEEccCCCcceEecCccccc------CCCcEEEEcCccccCccCC-----HHH---ccEEEEecccccc-CCceEEE
Confidence            56899999999999998 78877      8999999999999999887     444   6799999999975 9999999


Q ss_pred             EeeCcccccccccCCCCccCCCCce---ecCCCC--CChHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438           84 WATNPEYLKNKATESKPVVDYKDWQ---ITLSRS--FRSLKLWFVIRNYGME-NLRHFLRSHVNMARLFERLVSGDKRFE  157 (239)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~l~~~g~~-g~~~~~~~~~~la~~l~~~l~~~~g~~  157 (239)
                      ++++ +.+....+....+.++..+.   ...+++  ...+++..+++.+-.+ |++++.+++.++++++++.|++++.+.
T Consensus       207 ~~s~-~~l~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~  285 (360)
T PRK05355        207 IVRE-DLLGRALPSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAIDSSDFYR  285 (360)
T ss_pred             EECH-HHHhhcccCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            9965 33322211011122211100   011222  2335666778887777 799999999999999999999985333


Q ss_pred             EEcC--CCe-eEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCC
Q 048438          158 VVFP--CHF-AVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATL  234 (239)
Q Consensus       158 ~~~~--~~~-~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~  234 (239)
                      .+.+  .++ .+++|.+++.                       .....+++.+.++|.......  .....+|+|+++++
T Consensus       286 ~~~~~~~rs~~v~sf~~~~~-----------------------~~~~~~~~~~~~~Gi~~~~~~--~~~g~vRiS~~~~n  340 (360)
T PRK05355        286 NPVAPEDRSRMNVPFTLADE-----------------------ELDKKFLAEAKAAGLVGLKGH--RSVGGMRASIYNAM  340 (360)
T ss_pred             cCCChhhcCCcEEEEEcCCh-----------------------HHHHHHHHHHHHCCCcccCCC--CccCcEEEECCCCC
Confidence            3332  234 5799998652                       122355566667777753222  22358999999999


Q ss_pred             CCcC
Q 048438          235 TEER  238 (239)
Q Consensus       235 t~~~  238 (239)
                      |.+|
T Consensus       341 t~ee  344 (360)
T PRK05355        341 PLEG  344 (360)
T ss_pred             CHHH
Confidence            8765

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.78  E-value=9e-18  Score=158.64  Aligned_cols=208  Identities=15%  Similarity=0.064  Sum_probs=129.9

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccce--
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCC--   81 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g--   81 (239)
                      .+++|++|.++|..+..+|+++|+++||++|+|+||||||..+.+.+...     +..++|++++++|||++.|.|+|  
T Consensus       640 ~la~V~it~pst~G~~e~~I~eI~~i~h~~G~~v~VDgA~~~al~~l~~p-----g~~GADi~~~s~HK~f~~P~G~GGP  714 (954)
T PRK05367        640 NLAAIMITYPSTHGVFEETIREICEIVHEHGGQVYLDGANMNAQVGLARP-----GDIGADVSHLNLHKTFCIPHGGGGP  714 (954)
T ss_pred             CeEEEEEEcCCCCeeecCCHHHHHHHHHHcCCEEEEECcChhhccCCCCh-----hhcCCCEEEecCcccCCCCcCCCCC
Confidence            57888999998874446999999999999999999999998765554421     11259999999999998887754  


Q ss_pred             ---EEEeeCcccccccccCCCC--ccCCCCceecCCCCC----ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhC
Q 048438           82 ---CLWATNPEYLKNKATESKP--VVDYKDWQITLSRSF----RSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSG  152 (239)
Q Consensus        82 ---~l~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~  152 (239)
                         ++++++  .+.+.......  ..+........+.++    .+...|..++.+|.+|++++.++...+++|+.++|++
T Consensus       715 g~G~l~vr~--~l~p~lpg~~v~~~~~~~~~g~v~ta~~g~al~~~~a~~yi~~~G~~Glr~~a~~~~~~A~Yl~~~L~~  792 (954)
T PRK05367        715 GVGPIGVKA--HLAPFLPGHPVQIAGGETGIGAVSAAPFGSASILPISWMYIRMMGAEGLRQATEVAILNANYIAKRLKD  792 (954)
T ss_pred             ceEEEeecc--cccccCCCCccCcCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence               898864  22221111100  000000111111222    2345778889999999999999999999999999987


Q ss_pred             CCCeEEEcC--CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEe
Q 048438          153 DKRFEVVFP--CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFAT  230 (239)
Q Consensus       153 ~~g~~~~~~--~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~  230 (239)
                      ...+...++  +..+-..|.+.+...              ..    +..+..+.++|.+.|....+. .+.....+|+++
T Consensus       793 ~~~~~~~~~~~~~~~e~i~~~~~~~~--------------~~----g~~~~di~krL~d~G~~~~t~-~~pv~~~l~i~p  853 (954)
T PRK05367        793 HYPVLYTGANGRVAHECILDLRPLKE--------------ST----GITVDDIAKRLIDYGFHAPTM-SFPVAGTLMVEP  853 (954)
T ss_pred             hcCccccCCCCCcccceEEEeecccc--------------cC----CCCHHHHHHHHHHCCCeEeec-CCccCCEEEEEe
Confidence            422222222  223334444432110              00    011246777887777765542 233345677777


Q ss_pred             cCCCCCc
Q 048438          231 GATLTEE  237 (239)
Q Consensus       231 ~~~~t~~  237 (239)
                      +-.+|.+
T Consensus       854 tE~~s~~  860 (954)
T PRK05367        854 TESESKA  860 (954)
T ss_pred             eecCCHH
Confidence            6655544

>TIGR01366 serC_3 phosphoserine aminotransferase, putative

Probab=99.78  E-value=9.9e-19  Score=150.76  Aligned_cols=200  Identities=10%  Similarity=-0.030  Sum_probs=132.6

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL   83 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l   83 (239)
                      .+-+|+++|.+|.+|.++|+++|   +|++|++++|||+|++++.+++     ++.   +|++++++|||+++|.|.+++
T Consensus       128 ~~~lV~~~h~et~tG~~~pi~~I---~~~~g~~~iVDavqs~g~~~id-----v~~---~D~~~~s~~K~lg~~~Gl~~~  196 (361)
T TIGR01366       128 GVDVIAWAHNETSTGVAVPVRRP---EGSDDALVVIDATSGAGGLPVD-----IAE---TDVYYFAPQKNFASDGGLWLA  196 (361)
T ss_pred             CCCEEEEcccCCccceecccccc---cccCCCeEEEEcCccccCCCCC-----HHH---CCEEEEEchhhcCCCCceEEE
Confidence            45689999999999999999998   5899999999999999999887     443   899999999999999888887


Q ss_pred             EeeCccccccccc---CC---CCccCCC---CceecCCCCCC-----hHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHH
Q 048438           84 WATNPEYLKNKAT---ES---KPVVDYK---DWQITLSRSFR-----SLKLWFVIRNYGME-NLRHFLRSHVNMARLFER  148 (239)
Q Consensus        84 ~~~~~~~l~~~~~---~~---~~~~~~~---~~~~~~~~~~~-----~~~~~~~l~~~g~~-g~~~~~~~~~~la~~l~~  148 (239)
                      +++. ..+.....   ..   +.+.++.   ....+.++...     .+++..+++.+..+ |++++.+++.++++++++
T Consensus       197 ~~s~-~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~~~l~~  275 (361)
T TIGR01366       197 IMSP-AALERIEAIAASGRWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTADSSSRLYS  275 (361)
T ss_pred             EECH-HHHhhhhcccCCCCCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            7754 33322111   00   0112211   11112222221     13555677777666 588888999999999999


Q ss_pred             HHhCCCCeEEEcC-C--CeeE-EEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEe
Q 048438          149 LVSGDKRFEVVFP-C--HFAV-VCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIY  224 (239)
Q Consensus       149 ~l~~~~g~~~~~~-~--~~~i-v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~  224 (239)
                      .|.+.++++++.+ +  .+++ .+|.++ .+..                      ...+.+.|.++|.........-+..
T Consensus       276 ~l~~~~~~~~~~~~~~~~s~~v~~v~~~-~g~~----------------------~~~v~~~L~~~gI~i~~~~~~l~~~  332 (361)
T TIGR01366       276 WAQERPYATPFVTDPGKRSQVVGTIDFV-DDID----------------------AATVAKILRANGIVDTEPYRKLGRN  332 (361)
T ss_pred             HHHhCCCcccCCCChhhcccceEEEECC-CccC----------------------HHHHHHHHHHCCCeeccCccccCCC
Confidence            9999876776642 2  1222 233333 2210                      1246666766776654332112346


Q ss_pred             EEEEEecCCCCCcC
Q 048438          225 AIRFATGATLTEER  238 (239)
Q Consensus       225 ~lR~~~~~~~t~~~  238 (239)
                      ++|++.+.++|.+|
T Consensus       333 ~vRis~~~~~t~~d  346 (361)
T TIGR01366       333 QLRVAMFPAIDPDD  346 (361)
T ss_pred             cEEEEcCCCCCHHH
Confidence            89999999888764

This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.

>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase

Probab=99.77  E-value=6.2e-18  Score=145.09  Aligned_cols=204  Identities=16%  Similarity=0.168  Sum_probs=131.9

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLW   84 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~   84 (239)
                      +.+|+.++.+|.+|.+.|+++|+++|++||++++||++|+.+..+++     +..+ ++|++++++|||+++|.|+|+++
T Consensus       126 ~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~livD~~~s~g~~~~~-----~~~~-~~d~~~~s~~K~l~~~~G~g~~~  199 (355)
T TIGR03301       126 ITHVATVHHETTTGILNPLEAIAKVARSHGAVLIVDAMSSFGAIPID-----IEEL-DVDALIASANKCLEGVPGFGFVI  199 (355)
T ss_pred             ceEEEEEecCCcccchhHHHHHHHHHHHcCCEEEEEeccccCCcccc-----hhhc-CccEEEecCCcccccCCceeEEE
Confidence            45677888899999999999999999999999999999987766554     3333 49999999999999999999999


Q ss_pred             eeCcccccccc-cCCCCccCCCC-c---eecCCCCCC-----hHHHHHHHHHhCHHH-HHHHHHHHHHHHHHHHHHHhCC
Q 048438           85 ATNPEYLKNKA-TESKPVVDYKD-W---QITLSRSFR-----SLKLWFVIRNYGMEN-LRHFLRSHVNMARLFERLVSGD  153 (239)
Q Consensus        85 ~~~~~~l~~~~-~~~~~~~~~~~-~---~~~~~~~~~-----~~~~~~~l~~~g~~g-~~~~~~~~~~la~~l~~~l~~~  153 (239)
                      +++ +.+.... .......+... +   ......++.     ..++..+++.+..++ +++..++..++++++.+.|++.
T Consensus       200 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~L~~~  278 (355)
T TIGR03301       200 ARR-DLLEASAGNARSLYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQALEELEAEGGVPARIARYRRNRELLVDGLRAL  278 (355)
T ss_pred             ECH-HHHHHhhCCCCCceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHc
Confidence            854 3332211 00001111000 0   000111211     133344566554554 7888888899999999999886


Q ss_pred             CCeEEEcCCC--ee-EEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEe
Q 048438          154 KRFEVVFPCH--FA-VVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFAT  230 (239)
Q Consensus       154 ~g~~~~~~~~--~~-iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~  230 (239)
                       |++++.++.  .+ +++|++++..                     ......+.++|.++|.+..... .....++|+++
T Consensus       279 -g~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~l~~~gi~i~~~~-~~~~~~iRis~  335 (355)
T TIGR03301       279 -GFQPLLPERWQSPIIVSFLYPDDP---------------------DFDFDDFYQELKERGFVIYPGK-LTLADTFRIGT  335 (355)
T ss_pred             -CCeeecCCCCCCCcEEEEECCCCC---------------------cchHHHHHHHHHHCCEEEECCc-cccccEEEEec
Confidence             888765532  33 4667775421                     0011356677777776543322 11236899998


Q ss_pred             cCCCCCcC
Q 048438          231 GATLTEER  238 (239)
Q Consensus       231 ~~~~t~~~  238 (239)
                      +.++|.+|
T Consensus       336 ~~~~~~~~  343 (355)
T TIGR03301       336 IGEIDAAD  343 (355)
T ss_pred             CCCCCHHH
Confidence            88776543

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.

>PTZ00094 serine hydroxymethyltransferase; Provisional

Probab=99.77  E-value=6.2e-18  Score=149.96  Aligned_cols=196  Identities=12%  Similarity=0.145  Sum_probs=123.5

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL   83 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l   83 (239)
                      .|-+|++  +.+.+|.+.|+++|+++||++|+++|||+||++|.++.+....   .+.++|++++++||||++|.| |++
T Consensus       182 ~~~lvi~--~~s~~g~~~di~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~---~~~~~D~l~~S~hK~l~GP~G-g~l  255 (452)
T PTZ00094        182 RPKLIIA--GASAYPRDIDYKRFREICDSVGAYLMADIAHTSGLVAAGVLPS---PFPYADVVTTTTHKSLRGPRS-GLI  255 (452)
T ss_pred             CCCEEEE--eCCCCCCccCHHHHHHHHHHcCCEEEEeccchhccccCCCCCC---CCCCCcEEEcCCccCCCCCCc-eEE
Confidence            3544443  3457999999999999999999999999999999987653221   122599999999999999998 777


Q ss_pred             EeeCcccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcC-
Q 048438           84 WATNPEYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFP-  161 (239)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~-  161 (239)
                      ++++. .............  .+ .+.++.. ...+++..+++.+...+++++.++..+++++|.+.|.+. |++++.+ 
T Consensus       256 ~~~~~-~~~~l~~~~~~~~--~p-~~~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~l~~~L~~~-g~~v~~~~  330 (452)
T PTZ00094        256 FYRKK-VKPDIENKINEAV--FP-GLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKALAAALEKR-GYDLVTGG  330 (452)
T ss_pred             EEecc-cchHHHHhhcccc--CC-CCCCCchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhC-CcEEecCC
Confidence            77542 2111100000000  00 1122222 233556667777655566778888889999999999885 9988753 


Q ss_pred             --CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEE-EEC-----CEeEEEEEecCC
Q 048438          162 --CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNV-VLG-----GIYAIRFATGAT  233 (239)
Q Consensus       162 --~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-~~~-----g~~~lR~~~~~~  233 (239)
                        ....+|.|..++..                        ...+...|.+.|.. ++.. ...     ....+|++++.+
T Consensus       331 ~~~~~~~v~~~~~~~~------------------------~~~~~~~L~~~gI~-vs~~~~p~~~~~~~~~~vRis~~~~  385 (452)
T PTZ00094        331 TDNHLVLVDLRPFGIT------------------------GSKMEKLLDAVNIS-VNKNTIPGDKSALNPSGVRLGTPAL  385 (452)
T ss_pred             CCCceEeecCCcCCCC------------------------HHHHHHHHHHCCcE-EecccCCCCCcCCCCCeEEECCHHH
Confidence              22345555443321                        11444455444444 4322 111     126899998877


Q ss_pred             CC
Q 048438          234 LT  235 (239)
Q Consensus       234 ~t  235 (239)
                      +|
T Consensus       386 tt  387 (452)
T PTZ00094        386 TT  387 (452)
T ss_pred             Hh
Confidence            66

>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional

Probab=99.77  E-value=8.8e-18  Score=145.24  Aligned_cols=203  Identities=17%  Similarity=0.136  Sum_probs=133.1

Q ss_pred             EEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEEe
Q 048438            6 LFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWA   85 (239)
Q Consensus         6 ~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~   85 (239)
                      -+|.+++.+|.+|.+.|+++|+++||++|++++||++|+.+..+++     +..+ ++|++++++|||+++|.|+|++++
T Consensus       133 ~~v~~~~~~~~tG~~~~~~~i~~l~~~~~~~livDa~~~~g~~~~~-----~~~~-~~d~~v~s~~K~l~g~~G~G~l~~  206 (368)
T PRK13479        133 THVALVHCETTTGILNPLDEIAAVAKRHGKRLIVDAMSSFGAIPID-----IAEL-GIDALISSANKCIEGVPGFGFVIA  206 (368)
T ss_pred             cEEEEEcccCccccccCHHHHHHHHHHcCCEEEEEcccccCCcccc-----cccc-CceEEEecCccccccCCCceEEEE
Confidence            3677889999999999999999999999999999999988876554     3333 399999999999999999999998


Q ss_pred             eCcccccccccCC-CCccCCC---Ccee-cCCCCC-----ChHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHhCCC
Q 048438           86 TNPEYLKNKATES-KPVVDYK---DWQI-TLSRSF-----RSLKLWFVIRNYGME-NLRHFLRSHVNMARLFERLVSGDK  154 (239)
Q Consensus        86 ~~~~~l~~~~~~~-~~~~~~~---~~~~-~~~~~~-----~~~~~~~~l~~~g~~-g~~~~~~~~~~la~~l~~~l~~~~  154 (239)
                      +. +.+....... ....+..   .+.. ...+++     ..+.+..+++.+..+ +++++.++..++++++.+.|++. 
T Consensus       207 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-  284 (368)
T PRK13479        207 RR-SELEACKGNSRSLSLDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEEEGGVPARGARYANNQRTLVAGMRAL-  284 (368)
T ss_pred             CH-HHHHHhhcCCCCeeecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc-
Confidence            54 3332211100 0011100   0000 011111     123444556655333 46788889999999999999987 


Q ss_pred             CeEEEcCC--Ce-eEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEec
Q 048438          155 RFEVVFPC--HF-AVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATG  231 (239)
Q Consensus       155 g~~~~~~~--~~-~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~  231 (239)
                      |++++.++  .+ .+++|.++....                     .....+.++|.++|.++.... ......+|++.+
T Consensus       285 g~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~l~~~L~~~gi~v~~g~-~~~~~~iRis~~  342 (368)
T PRK13479        285 GFEPLLDAEIQSPIIVTFHAPADPA---------------------YDFKEFYERLKEQGFVIYPGK-LTQVDTFRIGCI  342 (368)
T ss_pred             CCcccCCchhcCceEEEEECCCCCC---------------------cCHHHHHHHHHHCCEEEecCC-CCCCCEEEEecC
Confidence            88876543  23 357777654210                     001267777877877654321 112357899988


Q ss_pred             CCCCCcC
Q 048438          232 ATLTEER  238 (239)
Q Consensus       232 ~~~t~~~  238 (239)
                      .++|.+|
T Consensus       343 ~~~t~ed  349 (368)
T PRK13479        343 GDVDAAD  349 (368)
T ss_pred             CCCCHHH
Confidence            8777654

>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]

Probab=99.76  E-value=4.6e-18  Score=144.64  Aligned_cols=77  Identities=23%  Similarity=0.317  Sum_probs=70.8

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL   83 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l   83 (239)
                      .+-+|.+.+.++++|.++|++||+++|+++|+.+|+||||+.|.+++|     ++.+. +|++++++|||++ |+|+|+|
T Consensus       181 ~T~lv~I~~Vnn~~gv~~Pv~EI~~icr~~~v~v~~DaAQavG~i~vD-----V~eln-~D~~s~s~HK~yg-p~~iGaL  253 (428)
T KOG1549|consen  181 KTRLVSIMHVNNEIGVLQPVKEIVKICREEGVQVHVDAAQAVGKIPVD-----VQELN-ADFLSISAHKIYG-PPGIGAL  253 (428)
T ss_pred             CceEEEEEecccCccccccHHHHHHHhCcCCcEEEeehhhhcCCcccc-----HHHcC-chheeeecccccC-CCcceEE
Confidence            467899999999999999999999999999999999999999999998     77775 9999999999965 6669999


Q ss_pred             EeeC
Q 048438           84 WATN   87 (239)
Q Consensus        84 ~~~~   87 (239)
                      |++.
T Consensus       254 Yvr~  257 (428)
T KOG1549|consen  254 YVRR  257 (428)
T ss_pred             EEcc
Confidence            9975

>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]

Probab=99.76  E-value=3.3e-18  Score=142.06  Aligned_cols=190  Identities=19%  Similarity=0.213  Sum_probs=127.4

Q ss_pred             ccEEEEEecCCCCcccccCh---hHHHHHHHHhCCEEEEecccccccccCcc--cccccCCCCCcceEEEcCcccCCCcc
Q 048438            4 IPLFLCATIGTTAITAVDPL---KPLCDVAKQFGIWVHVDAAYAGSACIFPE--FRHFIDGVEGADSFSLNAHKWFFATL   78 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl---~~i~~i~~~~gi~lhvD~A~~~~~~~~~~--~~~~~~~~~~~Ds~~~~~hK~l~~P~   78 (239)
                      .|.++..|.-| +.|++-|+   ++|.++||++|+.||+|||.-+.++....  .+.+.   .++|++++++.|.++.|.
T Consensus       131 ~~~~~~e~~~t-e~GtVy~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg~~~~~~~---~~~D~v~~~~tK~g~~~~  206 (342)
T COG2008         131 TPLAVLENTAT-EGGTVYPLDELEAISAVCKEHGLPLHMDGARLANALVALGVALKTIK---SYVDSVSFCLTKGGGAPV  206 (342)
T ss_pred             CceEEEeeccC-CCceecCHHHHHHHHHHHHHhCCceeechHHHHHHHHHcCCCHHHHH---hhCCEEEEecccCCccee
Confidence            56677666666 88998775   55677899999999999998776654422  11122   259999999999999996


Q ss_pred             cceEEEeeCcccccccccCCCCccCCCCceecCC---CCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 048438           79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLS---RSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKR  155 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g  155 (239)
                      |+  +++.++++.+....        ..+...++   .++-+++....|   ..+-+....+|.+++|++|.+.+.+.+|
T Consensus       207 gA--iv~gn~~~~~~a~~--------~rK~~Ggl~~k~r~laA~~~~~l---~~~~~~~~~~Han~mA~~La~~~~~~~G  273 (342)
T COG2008         207 GA--IVFGNRDFAKRARR--------WRKRAGGLMRKARFLAAQGLYAL---EDDVWRLAADHANAMAARLAEGLEAKPG  273 (342)
T ss_pred             ee--EEEcCHHHHHHHHH--------HHHHhcccHhhhhHHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHhhhhcCC
Confidence            54  55556666554421        00111111   123333332333   3344667777888899999999998899


Q ss_pred             eEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCE-eEEEEEecCCC
Q 048438          156 FEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGI-YAIRFATGATL  234 (239)
Q Consensus       156 ~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~-~~lR~~~~~~~  234 (239)
                      +++..|+++|+|.++++..                           . .+.+...+..++......+. ..+|++ ++|.
T Consensus       274 ~~~~~~~~tN~vf~~l~~~---------------------------~-i~~l~~~~~~~~~~~~~~~~~~~vRfv-ts~a  324 (342)
T COG2008         274 VKLAFPVETNMVFVRLPES---------------------------A-IEALRLAGALFYRGVLIGAHGEIVRFV-TSWA  324 (342)
T ss_pred             ceeccCCcccEEEEECChH---------------------------H-HHHHHhhchhheeeeeccCCCceEEEE-eecc
Confidence            9999999999999998752                           1 14555566666654444333 489999 8888


Q ss_pred             CCcCC
Q 048438          235 TEERH  239 (239)
Q Consensus       235 t~~~~  239 (239)
                      |++||
T Consensus       325 ~~~ed  329 (342)
T COG2008         325 TSEED  329 (342)
T ss_pred             CCHHH
Confidence            88764

>PRK02948 cysteine desulfurase; Provisional

Probab=99.76  E-value=2.7e-17  Score=142.88  Aligned_cols=155  Identities=10%  Similarity=0.114  Sum_probs=106.1

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLW   84 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~   84 (239)
                      +.+|+.++.+|.+|.+.|+++|.++|+++|+++|||++|+.+..+.+     +..+ ++|++++++||+ ++|.|+|+++
T Consensus       139 ~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~vivD~~~~~g~~~~~-----~~~~-~~d~~~~s~~K~-~gp~G~G~l~  211 (381)
T PRK02948        139 TVLASIQHANSEIGTIQPIAEIGALLKKYNVLFHSDCVQTFGKLPID-----VFEM-GIDSLSVSAHKI-YGPKGVGAVY  211 (381)
T ss_pred             CEEEEEECCcCCcEeehhHHHHHHHHHHcCCEEEEEChhhccccccC-----cccC-CCCEEEecHHhc-CCCCcEEEEE
Confidence            56888999999999999999999999999999999999998877665     3333 499999999997 5699999999


Q ss_pred             eeCcccccccccCCCCccCCCCceecCCCC--CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcC-
Q 048438           85 ATNPEYLKNKATESKPVVDYKDWQITLSRS--FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFP-  161 (239)
Q Consensus        85 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~-  161 (239)
                      +++...+......   ..  ....+..++.  ...+++..+++.+. +.++++.++..++++++.+.|+++ ++++... 
T Consensus       212 ~~~~~~~~~~~~~---~~--~~~~~~~~t~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~~l~~~L~~~-~~~v~~~~  284 (381)
T PRK02948        212 INPQVRWKPVFPG---TT--HEKGFRPGTVNVPGIAAFLTAAENIL-KNMQEESLRFKELRSYFLEQIQTL-PLPIEVEG  284 (381)
T ss_pred             EcCCCCCCCcccC---CC--CCCCcCCCCccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEeC
Confidence            8643211111100   00  0011112221  12234444555432 456778889999999999999987 6554421 


Q ss_pred             -C---CeeEEEEEEcC
Q 048438          162 -C---HFAVVCFRVSP  173 (239)
Q Consensus       162 -~---~~~iv~f~~~~  173 (239)
                       +   ...+++|.+++
T Consensus       285 ~~~~~~~~i~~~~~~~  300 (381)
T PRK02948        285 HSTSCLPHIIGVTIKG  300 (381)
T ss_pred             CCccCcCCEEEEEeCC
Confidence             1   13578888764

>PRK04366 glycine dehydrogenase subunit 2; Validated

Probab=99.74  E-value=3.3e-17  Score=146.17  Aligned_cols=206  Identities=16%  Similarity=0.089  Sum_probs=125.4

Q ss_pred             cEEEEEecCCCCcccc-cChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc---
Q 048438            5 PLFLCATIGTTAITAV-DPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC---   80 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i-~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~---   80 (239)
                      +.+|+++..+ .+|.+ +|+++|+++||++|+|+|||+||..+.+....    ...+ ++|++++++||||++|.|+   
T Consensus       209 t~~V~v~~Pn-~tG~~~~dl~eI~~~a~~~gal~iVD~a~~~~~~g~~~----~~~~-GaD~~~~~~hK~l~~P~g~Ggp  282 (481)
T PRK04366        209 TAALMLTNPN-TLGLFERNILEIAEIVHEAGGLLYYDGANLNAILGKAR----PGDM-GFDVVHLNLHKTFSTPHGGGGP  282 (481)
T ss_pred             CeEEEEeCCC-CccccchHHHHHHHHHHHcCCEEEEEecChhhhcccCC----cccc-CCCEEEEechhhcCCCCCCCCC
Confidence            4566666644 78988 68999999999999999999999766432111    1122 4999999999999988665   


Q ss_pred             --eEEEeeCccccccccc------CCCCccCCC-CceecCCCCC-----ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Q 048438           81 --CCLWATNPEYLKNKAT------ESKPVVDYK-DWQITLSRSF-----RSLKLWFVIRNYGMENLRHFLRSHVNMARLF  146 (239)
Q Consensus        81 --g~l~~~~~~~l~~~~~------~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l  146 (239)
                        |++++++ .+......      .....+++. ...+...+.+     .+++.|..+..+|.+|++++.++..++++|+
T Consensus       283 ~~G~l~~~~-~~~~~lp~~~v~~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~~G~~Gl~~~a~~~~~~a~~l  361 (481)
T PRK04366        283 GSGPVGVKE-ELAPFLPVPVVEKDGDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRSLGAEGLREVSEDAVLNANYL  361 (481)
T ss_pred             Ceeeeeehh-hhHhhCCCCeeeccCCceeecccccccCCCcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              5888764 22221110      001111110 0011011112     2356777788999999999999999999999


Q ss_pred             HHHHhCCCCeEEEcC-CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEE-CCEe
Q 048438          147 ERLVSGDKRFEVVFP-CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVL-GGIY  224 (239)
Q Consensus       147 ~~~l~~~~g~~~~~~-~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~-~g~~  224 (239)
                      +++|+++  +++..+ +..+.+.|..+.-..               +    +.-...+.++|.++|......... ....
T Consensus       362 ~~~L~~~--~~~~~~~~~~~~~~~~~~~~~~---------------~----g~~~~~v~~~L~~~Gi~~~~~~~p~~~~~  420 (481)
T PRK04366        362 KARLKDI--YDLPYDRPCMHEFVLSGKKLKE---------------T----GVRTLDIAKRLLDYGFHPPTIYFPLIVPE  420 (481)
T ss_pred             HHHhHhh--CcccCCCCeeEEEEEECccccc---------------c----CCCHHHHHHHHHHCCccCCccccccccCC
Confidence            9999986  444332 233334343221000               0    011236777777777653311111 1134


Q ss_pred             EEEEEecCCCCCcC
Q 048438          225 AIRFATGATLTEER  238 (239)
Q Consensus       225 ~lR~~~~~~~t~~~  238 (239)
                      .+|++++-.+|.+|
T Consensus       421 ~l~is~~e~~t~ed  434 (481)
T PRK04366        421 ALMIEPTETESKET  434 (481)
T ss_pred             eEEEcccCCCCHHH
Confidence            79999888777654

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.74  E-value=1.9e-16  Score=136.59  Aligned_cols=200  Identities=16%  Similarity=0.107  Sum_probs=125.9

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL   83 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l   83 (239)
                      .+-+|++++.+|.+|.+.|+++|.++||++|+++|||+||+.+..+++     ...+ ++|+++.++||++++|.++|++
T Consensus       139 ~~~lv~l~~p~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~~~-----~~~~-~~d~~~~s~~K~l~~~~~~G~l  212 (361)
T cd06452         139 PPALALLTHVDGNYGNLHDAKKIAKVCHEYGVPLLLNGAYTVGRMPVS-----GKEL-GADFIVGSGHKSMAASAPIGVL  212 (361)
T ss_pred             CceEEEEECCCCCCeeeccHHHHHHHHHHcCCeEEEECCcccCCcCCC-----HHHc-CCCEEEecCCccccCCCCeEEE
Confidence            567888899999999999999999999999999999999998766554     2222 3899999999999988889988


Q ss_pred             EeeCcccccccccCCCCccCCCCceecCCCC--CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc-
Q 048438           84 WATNPEYLKNKATESKPVVDYKDWQITLSRS--FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF-  160 (239)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~-  160 (239)
                      ++++ +.+....... ..++.......+++.  ..++.++.+++.+ .+. .++.++..+.++++.+.|++++|++++. 
T Consensus       213 ~~~~-~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~al~~~-~~~-~~~~~~~~~~~~~l~~~L~~l~g~~v~~~  288 (361)
T cd06452         213 ATTE-EWADIVFRTS-QMFKIKEVELLGCTLRGAPLVTLMASFPHV-KER-VKRWDEEVEKARWFVAELEKIEGIKQLGE  288 (361)
T ss_pred             EECH-HHHHHHhccc-cccccceeeeeccccCchHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHhcCCCeEEECC
Confidence            8753 3333321110 011111111111221  1233444444432 222 3445555677899999999998999884 


Q ss_pred             -CCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHH-HHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecC
Q 048438          161 -PCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQI-NEFNRELLESINASGKAYMTNVVLGGIYAIRFATGA  232 (239)
Q Consensus       161 -~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~  232 (239)
                       +...|++.|+.+...                ..... ..-...+.+.|.++|....   ...-..++|++++.
T Consensus       289 ~~~~~n~~~~~~~~~~----------------~~~~~~~~~~~~~~~~L~~~gI~~~---~~~~~~~~ri~~~g  343 (361)
T cd06452         289 KPKNHDLMFFETPSFD----------------EIAKKHKRRGYFLYSELKKRGIHGI---KPGLTRYFKLSTYG  343 (361)
T ss_pred             CCCCCceEEEEcCCcc----------------hhhhhccccchhHHHHHHHcCceEE---cCCCceEEEEEecC
Confidence             346788888865210                00000 0001257777877776621   12223488999744

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family

Probab=99.74  E-value=1.6e-17  Score=143.05  Aligned_cols=194  Identities=13%  Similarity=0.102  Sum_probs=127.9

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLW   84 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~   84 (239)
                      +-+|++++.+|.+|.+.+     ++++.||+.++|||+|++|..+++     ++.   .|...+++||++ +|.|+|+++
T Consensus       139 ~~lV~~~h~~t~tG~~~~-----~i~~~~g~~~~VDa~qs~g~~~id-----v~~---~~~~~ss~~K~l-GP~G~g~l~  204 (355)
T cd00611         139 AAYVHYCSNETIHGVEFD-----EVPDTGGVPLVADMSSNILSRPID-----VSK---FGVIYAGAQKNL-GPAGVTVVI  204 (355)
T ss_pred             CCEEEEeCCcccccEEcc-----eecccCCCeEEEEccccccCCCCC-----HHH---hCEEEeeccccc-CCCceEEEE
Confidence            457899999999999832     445569999999999999999987     444   445556799986 599999999


Q ss_pred             eeCcccccccccCCCCccCCCC---ceecCCCC--CChHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHhCCCCeE-
Q 048438           85 ATNPEYLKNKATESKPVVDYKD---WQITLSRS--FRSLKLWFVIRNYGME-NLRHFLRSHVNMARLFERLVSGDKRFE-  157 (239)
Q Consensus        85 ~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~l~~~g~~-g~~~~~~~~~~la~~l~~~l~~~~g~~-  157 (239)
                      +++ +.+....+......++..   .....+++  ...+++..+++.+-.+ |++++.+++.++++++++.|++++|+. 
T Consensus       205 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~~~gl~~  283 (355)
T cd00611         205 VRK-DLLGKARKITPSMLNYKTHADNNSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDNSNGFYR  283 (355)
T ss_pred             ECH-HHHhhcccCCCCcccHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence            965 333222111111111100   00012232  2346677788888777 799999999999999999999998863 


Q ss_pred             EEcC--CCe-eEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCC
Q 048438          158 VVFP--CHF-AVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATL  234 (239)
Q Consensus       158 ~~~~--~~~-~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~  234 (239)
                      ...+  .++ .+++|.+++.                       .+...+.+.+.++|..  .+...+-...+|+|++.++
T Consensus       284 ~~~~~~~rs~~vvsf~~~~~-----------------------~l~~~~~~~~~r~G~~--~~~~~~~~g~vR~S~~~~n  338 (355)
T cd00611         284 GPVDKRARSRMNVPFRLGKE-----------------------ELEKEFLKEAEAAGMI--GLKGHRSVGGIRASIYNAL  338 (355)
T ss_pred             cCCCHHHcCceEEEEEcCCh-----------------------hhhHHHHHHHHHCCCc--ccCCCcccCeEEEEccCCC
Confidence            2111  234 4699998652                       1223444455567775  2222222358999999999


Q ss_pred             CCcC
Q 048438          235 TEER  238 (239)
Q Consensus       235 t~~~  238 (239)
                      |.+|
T Consensus       339 t~ed  342 (355)
T cd00611         339 SLEG  342 (355)
T ss_pred             CHHH
Confidence            8775

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.

>PRK14012 cysteine desulfurase; Provisional

Probab=99.73  E-value=4.6e-17  Score=142.54  Aligned_cols=145  Identities=11%  Similarity=0.073  Sum_probs=101.1

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLW   84 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~   84 (239)
                      +.+|++++.+|.+|.+.|+++|.++||++|+++|+|+||+++..+++     +..+ .+|++++++||. ++|.|+|+++
T Consensus       145 t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~vivD~a~~~g~~~~~-----~~~~-~~D~~~~s~~K~-~gp~g~G~l~  217 (404)
T PRK14012        145 TILVSIMHVNNEIGVIQDIAAIGEICRERGIIFHVDAAQSVGKVPID-----LSKL-KVDLMSFSAHKI-YGPKGIGALY  217 (404)
T ss_pred             CEEEEEECcCCCccchhhHHHHHHHHHHcCCEEEEEcchhcCCcccC-----cccC-CCCEEEEehhhc-cCCCceEEEE
Confidence            56888999999999999999999999999999999999999988765     3333 499999999995 5788999999


Q ss_pred             eeCcccccccccC-CCCccCCCCceecCCCCC--ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcC
Q 048438           85 ATNPEYLKNKATE-SKPVVDYKDWQITLSRSF--RSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFP  161 (239)
Q Consensus        85 ~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~  161 (239)
                      +++.... ...+. .+...   ...++.+...  ..+.+-.+++.+ ...+.++.++..++++++.+.|++++++++..+
T Consensus       218 ~~~~~~~-~~~~~~~g~~~---~~~~~~gt~~~~~~~~l~~al~~~-~~~~~~~~~~~~~l~~~l~~~L~~~~~i~~~~~  292 (404)
T PRK14012        218 VRRKPRV-RLEAQMHGGGH---ERGMRSGTLPTHQIVGMGEAARIA-KEEMATENERIRALRDRLWNGIKDIEEVYLNGD  292 (404)
T ss_pred             EecCCCC-CCCceecCCCc---cCCccCCCcCHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCC
Confidence            9754322 11110 00000   0011122111  112232344433 234566778889999999999999988887643

>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase

Probab=99.72  E-value=7.7e-17  Score=141.11  Aligned_cols=147  Identities=12%  Similarity=0.167  Sum_probs=108.0

Q ss_pred             CccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCccccccc-CCC--CCcceEEEcCcccCCCccc
Q 048438            3 LIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFI-DGV--EGADSFSLNAHKWFFATLD   79 (239)
Q Consensus         3 ~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~-~~~--~~~Ds~~~~~hK~l~~P~g   79 (239)
                      +.+++|+.+.++...|..||+++|+++|++||+|+|||+||+.+.....   ... .++  +.+|++++++||++.+|.+
T Consensus       204 kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~~~~---~~~~~g~~~Grad~vv~s~hK~l~~pg~  280 (444)
T TIGR03531       204 DNILCVLSTTSCFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSNKYM---ELINKAIKVGRVDAVVSSTDKNFMVPVG  280 (444)
T ss_pred             CCEEEEEEcCCcCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcChhhh---hhhhccccccCCCeEEEeCccCCCCCCC
Confidence            4456666666667778999999999999999999999999997542221   111 122  2489999999999999999


Q ss_pred             ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC---Ce
Q 048438           80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK---RF  156 (239)
Q Consensus        80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~---g~  156 (239)
                      +|++++++++++.......   .    .   ......+..+|..+..+|.+++++++++..++++++.+.|+++.   |.
T Consensus       281 Gg~I~~~d~el~~~i~~~y---~----g---~~~~s~~~~~~~~ll~~G~~g~~~li~~~~~~a~~l~~~L~~l~~~~~~  350 (444)
T TIGR03531       281 GAIIYSFDENFIQEISKSY---P----G---RASASPSLDVLITLLSLGSKGYLELLKERKEMYKYLKELLQKLAERHGE  350 (444)
T ss_pred             EEEEEECCHHHHHHHHHhc---c----C---CCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence            8888887776654432210   0    0   00113457788889999999999999999999999999998752   55


Q ss_pred             EEEcCC
Q 048438          157 EVVFPC  162 (239)
Q Consensus       157 ~~~~~~  162 (239)
                      +++..+
T Consensus       351 ~~~~~~  356 (444)
T TIGR03531       351 RLLDTP  356 (444)
T ss_pred             EeecCC
Confidence            666443

In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.69  E-value=1.9e-15  Score=130.89  Aligned_cols=199  Identities=15%  Similarity=0.114  Sum_probs=122.1

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL   83 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l   83 (239)
                      .+-+|++++.++.+|.+.|+++|+++|+++|++++||+||+.+.++.+     .... .+|+++.++|||++++.++|++
T Consensus       146 ~~~lv~~~~p~~~~G~~~~l~~i~~la~~~~~~livDea~~~g~~~~~-----~~~~-~~di~v~s~sK~~~~~g~~G~l  219 (370)
T TIGR02539       146 PPVLALLTHVDGEYGNLPDAGKVAKVCREKGVPLLLNCAYTVGRMPVS-----AKEI-GADFIVGSGHKSMAASGPCGVL  219 (370)
T ss_pred             CcEEEEEECCCCCCccccCHHHHHHHHHHcCCeEEEECccccCCcCCC-----HHHc-CCCEEEeeCcccccCCCCEEEE
Confidence            466788888899999999999999999999999999999998755433     1122 3899999999999877778888


Q ss_pred             EeeCcccccccccCCCCccCCCCceecCCCC--CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc-
Q 048438           84 WATNPEYLKNKATESKPVVDYKDWQITLSRS--FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF-  160 (239)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~-  160 (239)
                      +.+ ++.+....... ..++........+..  ..+...+.++... .+.+ +..++..+.++++++.|+++ |++++. 
T Consensus       220 ~~~-~~~i~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~al~~~-~~~l-~~~~~~~~~~~~l~~~L~~~-g~~~~~~  294 (370)
T TIGR02539       220 GMS-EEWEDIVLRKS-RYSPVKEVELLGCTSRGAPIVTMMASFPHV-VERV-KRWDEEVKKTRWFVAELEDI-GFIQLGQ  294 (370)
T ss_pred             EEC-HHHHhhhcccc-cCCccceeeeecccccccHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHhC-CcEEEcc
Confidence            874 34333222110 011111111111111  1223333333321 1222 23344556678999999987 898753 


Q ss_pred             -CCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEec
Q 048438          161 -PCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATG  231 (239)
Q Consensus       161 -~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~  231 (239)
                       +..+|++.|+++....               .....+.....+.+.|.++|...+.   .....++|++++
T Consensus       295 ~~s~t~~v~~~~~~~~~---------------~~~~~~~~~~~~~~~L~e~GI~~ir---~~~~~~iRis~~  348 (370)
T TIGR02539       295 KPKEHDLVKFETPGFHE---------------IAQKHKRRGYFLYEELKKRGIHGIR---SGQTKYFKLSVY  348 (370)
T ss_pred             CCCcCceEEEECCchhH---------------HhhhhccccHHHHHHHHhCCCcccc---CCcceEEEEEec
Confidence             5678999988753110               0000011223677788888875121   222458999984

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.67  E-value=4.5e-15  Score=140.18  Aligned_cols=209  Identities=14%  Similarity=0.031  Sum_probs=132.1

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc-----
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD-----   79 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g-----   79 (239)
                      ..+|++|+.+|..|..+||++|+++||++|+.++|||||..+......    ...+ ++|+++++.||||++|.|     
T Consensus       667 ta~V~vt~pSn~gg~e~~I~eI~~iah~~Galv~vDgAq~~a~~~l~~----p~~~-GaD~~~~s~HK~f~~P~G~GGPg  741 (993)
T PLN02414        667 LAALMVTYPSTHGVYEEGIDEICDIIHDNGGQVYMDGANMNAQVGLTS----PGFI-GADVCHLNLHKTFCIPHGGGGPG  741 (993)
T ss_pred             eEEEEEECCCccccccchHHHHHHHHHHcCCEEEEEecCHHhccCcCC----cccc-CCCEEEecCCccCCcCcccCCCC
Confidence            478999999999999999999999999999999999999887643321    1223 499999999999998875     


Q ss_pred             ceEEEeeCccccccccc----CCCCccCCCCceecCCCCC-------ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Q 048438           80 CCCLWATNPEYLKNKAT----ESKPVVDYKDWQITLSRSF-------RSLKLWFVIRNYGMENLRHFLRSHVNMARLFER  148 (239)
Q Consensus        80 ~g~l~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~  148 (239)
                      +|+++++. .+......    ..............++++.       .+...|..++.+|.+|+++..++...+++|+.+
T Consensus       742 ~G~l~~~~-~L~p~lPg~~v~~~~~~~~r~~~s~iGt~~~a~~g~al~l~~A~~yi~~lG~~Gl~~~a~~a~~nAnYl~~  820 (993)
T PLN02414        742 MGPIGVKK-HLAPFLPSHPVVPTGGIPRPEKTQPLGTISAAPWGSALILPISYTYIAMMGSEGLTDASKIAILNANYMAK  820 (993)
T ss_pred             eeeEEEch-hhcccCCCCccccCCCcccccCCCCcCCccchhhhhHHHHHHHHHHHHHHCHhHHHHHHHHHHHHHHHHHH
Confidence            99998864 22211110    0000010000000122221       113446667889999999999999999999999


Q ss_pred             HHhCCCCeEEEcC--CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEE
Q 048438          149 LVSGDKRFEVVFP--CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAI  226 (239)
Q Consensus       149 ~l~~~~g~~~~~~--~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~l  226 (239)
                      +|++..++...++  +..+=..+.+.+..           ...+.+       ...+.++|.+.|....+ ..+.....+
T Consensus       821 rL~~~~~~~~~~~~~~~~hEfv~~~~~l~-----------~~~g~~-------~~di~krL~d~Gihapt-~~~pv~~~l  881 (993)
T PLN02414        821 RLEGHYPVLFRGKNGTCAHEFIIDLRPFK-----------NTAGIE-------PEDVAKRLMDYGFHAPT-MSWPVPGTL  881 (993)
T ss_pred             HHHhhCCccccCCCCCeeeeEEEeccccc-----------cccCCC-------HHHHHHHHHHcCcEEee-eccccCCEE
Confidence            9987444433333  21222222222110           000001       13566777755554333 224567789


Q ss_pred             EEEecCCCCCcC
Q 048438          227 RFATGATLTEER  238 (239)
Q Consensus       227 R~~~~~~~t~~~  238 (239)
                      |++++-.++.+|
T Consensus       882 miepTE~~skee  893 (993)
T PLN02414        882 MIEPTESESKAE  893 (993)
T ss_pred             EEEeeeeCCHHH
Confidence            999998887654

>PLN03226 serine hydroxymethyltransferase; Provisional

Probab=99.66  E-value=4.1e-15  Score=132.13  Aligned_cols=163  Identities=15%  Similarity=0.120  Sum_probs=108.6

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL   83 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l   83 (239)
                      .|-+|++  +.+.+|...|+++|.++|+++|++++||+||+.|.+..+....   .++.+|++++++||||++|.| |++
T Consensus       183 ~pklIv~--~~S~~s~~~D~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~~---p~~~~Div~~t~hK~L~GP~G-g~I  256 (475)
T PLN03226        183 RPKLIIA--GASAYPRDWDYARMRKIADKVGALLMCDMAHISGLVAAQEAAS---PFEYCDVVTTTTHKSLRGPRG-GMI  256 (475)
T ss_pred             CCeEEEE--ecCcCCCccCHHHHHHHHHHcCCEEEEEchhhhCcccCCCCCC---CCCCCeEEEecCcccccCCCc-eEE
Confidence            4554544  3456899999999999999999999999999999886653211   123599999999999999999 777


Q ss_pred             EeeCcccccccccCCCCccCC------C-CceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 048438           84 WATNPEYLKNKATESKPVVDY------K-DWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKR  155 (239)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~~------~-~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g  155 (239)
                      ++++ ............+.++      . ...++++-. ..++++..+++.+-..+++++.++..+++++|++.|.+ .|
T Consensus       257 ~~~~-~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i~~~~~~~~~~~~~~na~~L~~~L~~-~G  334 (475)
T PLN03226        257 FFRK-GPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKAYQKQVKANAAALANRLMS-KG  334 (475)
T ss_pred             EEch-hhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHh-CC
Confidence            7653 2221110000000010      0 011222211 22345556677765566777888999999999999998 59


Q ss_pred             eEEEcC-CCeeEEEEEEcCC
Q 048438          156 FEVVFP-CHFAVVCFRVSPL  174 (239)
Q Consensus       156 ~~~~~~-~~~~iv~f~~~~~  174 (239)
                      ++++.+ .+.+++.+.+.+.
T Consensus       335 ~~l~~~~t~~hi~lv~~~~~  354 (475)
T PLN03226        335 YKLVTGGTDNHLVLWDLRPL  354 (475)
T ss_pred             CEEEcCCCCCCEEEEEccCC
Confidence            999864 3456777776543

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=99.63  E-value=1.9e-14  Score=125.42  Aligned_cols=198  Identities=17%  Similarity=0.131  Sum_probs=122.5

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCccccc--ccCCC-CCcceEEEcCcccCCCcccc
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRH--FIDGV-EGADSFSLNAHKWFFATLDC   80 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~--~~~~~-~~~Ds~~~~~hK~l~~P~g~   80 (239)
                      .+.+|+..+..+.+|.+.|+++|+++|++||+++++|++|+.+.+... ...  ...++ ..+|+++.++||+++++. .
T Consensus       170 ~~~~v~~~~v~~~tG~~~~l~~i~~la~~~~~~li~De~~~~g~~~~~-~~~~~~~~~~~~~~di~~~s~sK~l~g~r-~  247 (393)
T TIGR01822       170 RHRLIATDGVFSMDGVIAPLDEICDLADKYDALVMVDECHATGFLGPT-GRGSHELCGVMGRVDIITGTLGKALGGAS-G  247 (393)
T ss_pred             CceEEEEeCCccCCCCcCCHHHHHHHHHHcCCEEEEECCccccCcCCC-CCchHHhcCCCCCCeEEEEEChHHhhCCC-c
Confidence            466777777789999999999999999999999999999987655321 110  01111 248999999999988765 4


Q ss_pred             eEEEeeCcccccccccCCCCccCCCCceecCCCCC-ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Q 048438           81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSF-RSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVV  159 (239)
Q Consensus        81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~  159 (239)
                      |+++.. ++.........      ..+...++... .......+++.+  +..++..++..++.+++.+.|++. |+++.
T Consensus       248 G~~~~~-~~~~~~l~~~~------~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~  317 (393)
T TIGR01822       248 GFTTAR-KEVVELLRQRS------RPYLFSNSLPPAVVGASIKVLEML--EASNELRDRLWANTRYFRERMEAA-GFDIK  317 (393)
T ss_pred             EEEEeC-HHHHHHHHHhC------ccceecCCCCHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHHHc-CCCCC
Confidence            776653 33332221100      01111122111 112233344433  234556677789999999999875 88765


Q ss_pred             cCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEE----CCEeEEEEEecCCCC
Q 048438          160 FPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVL----GGIYAIRFATGATLT  235 (239)
Q Consensus       160 ~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~----~g~~~lR~~~~~~~t  235 (239)
                       ++..+++.+.+++.                       .....+.+.|.++| +++.....    .+...+|++++..+|
T Consensus       318 -~~~~~~~~i~~~~~-----------------------~~~~~l~~~L~~~g-I~v~~~~~~~~~~~~~~iRis~~~~~t  372 (393)
T TIGR01822       318 -PADHPIIPVMLYDA-----------------------VLAQRFARRLLEEG-IYVTGFFYPVVPKGQARIRVQISAAHT  372 (393)
T ss_pred             -CCCCCEEEEEeCCH-----------------------HHHHHHHHHHHHCC-eeEeeeCCCCCCCCCceEEEEECCCCC
Confidence             34456776665431                       12346777777776 44433221    245679999888877


Q ss_pred             CcC
Q 048438          236 EER  238 (239)
Q Consensus       236 ~~~  238 (239)
                      ++|
T Consensus       373 ~ed  375 (393)
T TIGR01822       373 EEQ  375 (393)
T ss_pred             HHH
Confidence            654

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>PRK07179 hypothetical protein; Provisional

Probab=99.61  E-value=1.2e-14  Score=127.49  Aligned_cols=196  Identities=12%  Similarity=0.071  Sum_probs=121.8

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCccccccc--CCC-CCcceEEEcCcccCCCcccce
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFI--DGV-EGADSFSLNAHKWFFATLDCC   81 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~--~~~-~~~Ds~~~~~hK~l~~P~g~g   81 (239)
                      |.+|++....+++|.+.|+++|.++|+++|+++|+|++|+.+.... ..+...  .++ ..+|+++.++||+++++  .|
T Consensus       182 ~~lV~v~~v~n~tG~i~pl~~I~~l~~~~~~~livDea~~~g~~g~-~g~g~~~~~~~~~~vdi~~~S~sK~~g~~--~G  258 (407)
T PRK07179        182 PGIIVVDSVYSTTGTIAPLADIVDIAEEFGCVLVVDESHSLGTHGP-QGAGLVAELGLTSRVHFITASLAKAFAGR--AG  258 (407)
T ss_pred             CeEEEECCCCCCCCccccHHHHHHHHHHcCCEEEEECcccccCcCC-CCCchHHhcCCCCCCCEEEeechHhhhcc--Ce
Confidence            5677788888999999999999999999999999999998764321 111111  112 24799999999998754  67


Q ss_pred             EEEeeCcccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc
Q 048438           82 CLWATNPEYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF  160 (239)
Q Consensus        82 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~  160 (239)
                      +++.+ ++.........      .......+.. ..++.+..+++.+.  ...++.++..++++++.+.|+++ |+++. 
T Consensus       259 ~l~~~-~~~~~~~~~~~------~~~~~~~t~~~~~~aa~~aal~~~~--~~~~~~~~l~~~~~~l~~~L~~~-g~~v~-  327 (407)
T PRK07179        259 IITCP-RELAEYVPFVS------YPAIFSSTLLPHEIAGLEATLEVIE--SADDRRARLHANARFLREGLSEL-GYNIR-  327 (407)
T ss_pred             EEEeC-HHHHHHHHHhC------cCeeeCCCCCHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHc-CCCCC-
Confidence            77764 33322211000      0001111111 11122334444432  22456677889999999999987 87765 


Q ss_pred             CCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcE---EEEEEEECCEeEEEEEecCCCCCc
Q 048438          161 PCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKA---YMTNVVLGGIYAIRFATGATLTEE  237 (239)
Q Consensus       161 ~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~---~~~~~~~~g~~~lR~~~~~~~t~~  237 (239)
                       ...+++.+.++..                       .-...+.+.|.++|..   +..+....+...+|++++..+|.+
T Consensus       328 -~~~~i~~l~~~~~-----------------------~~~~~~~~~L~~~GI~~~~~~~p~~~~~~~~lRis~~~~~t~e  383 (407)
T PRK07179        328 -SESQIIALETGSE-----------------------RNTEVLRDALEERNVFGAVFCAPATPKNRNLIRLSLNADLTAS  383 (407)
T ss_pred             -CCCCEEEEEeCCH-----------------------HHHHHHHHHHHHCCceEeeecCCCCCCCCceEEEEECCCCCHH
Confidence             3457888876431                       1123566677777764   122222234679999999888876


Q ss_pred             C
Q 048438          238 R  238 (239)
Q Consensus       238 ~  238 (239)
                      |
T Consensus       384 d  384 (407)
T PRK07179        384 D  384 (407)
T ss_pred             H
Confidence            4

>PRK13034 serine hydroxymethyltransferase; Reviewed

Probab=99.61  E-value=9.1e-15  Score=128.39  Aligned_cols=156  Identities=12%  Similarity=0.120  Sum_probs=97.8

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLW   84 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~   84 (239)
                      |-+|+.  +++.+|...|+++|.++|++||++++||+||+.|.......   ...+..+|++++++|||+.+|.| |+++
T Consensus       169 ~klVi~--~~~~~g~~~dl~~l~~la~~~g~~livD~Aha~G~~~~g~~---~~~~~~~Di~~~s~~K~l~g~~G-G~v~  242 (416)
T PRK13034        169 PKLIIA--GFSAYPRELDFARFREIADEVGALLMVDMAHIAGLVAAGEH---PNPFPHAHVVTTTTHKTLRGPRG-GMIL  242 (416)
T ss_pred             CeEEEE--CCCccccccCHHHHHHHHHHcCCEEEEeCcccccCcccCCC---CCCCCCceEEEEeCcccCCCCCC-eEEE
Confidence            444443  34557888899999999999999999999999987754321   11223599999999999988887 4444


Q ss_pred             eeCcccccccccCCCCccCCCCceecCCCCC-ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcC-C
Q 048438           85 ATNPEYLKNKATESKPVVDYKDWQITLSRSF-RSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFP-C  162 (239)
Q Consensus        85 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~-~  162 (239)
                      ..++.........   .+  .  +...+..+ ...++..++..+-..+..++.++.++++++|++.|++. |++++.+ .
T Consensus       243 ~~~~~~~~~~~~~---~~--~--~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~l~~~a~~l~~~L~~~-G~~~~~~~~  314 (416)
T PRK13034        243 TNDEEIAKKINSA---VF--P--GLQGGPLMHVIAAKAVAFGEALQPEFKTYAKQVIANAQALAEVLKER-GYDLVSGGT  314 (416)
T ss_pred             ECcHHHHHHHHhh---cC--C--cccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHc-CCEeccCCC
Confidence            4443322111100   00  0  00111111 11222222222211233456688889999999999987 9998753 5


Q ss_pred             CeeEEEEEEcCC
Q 048438          163 HFAVVCFRVSPL  174 (239)
Q Consensus       163 ~~~iv~f~~~~~  174 (239)
                      +++++.+.+...
T Consensus       315 ~t~i~~v~~~~~  326 (416)
T PRK13034        315 DNHLLLVDLRPK  326 (416)
T ss_pred             CCcEEEEEcCCC
Confidence            788888887653

>PLN02452 phosphoserine transaminase

Probab=99.61  E-value=4e-15  Score=128.02  Aligned_cols=189  Identities=12%  Similarity=0.095  Sum_probs=132.3

Q ss_pred             cEEEEEecCCCCccc-ccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438            5 PLFLCATIGTTAITA-VDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL   83 (239)
Q Consensus         5 p~~vv~t~gtt~~G~-i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l   83 (239)
                      +-.|.+++..|.+|+ +.|++++.+      +.++||++++.+..+++     ++.+. +|+  +++||++ +|.|.|++
T Consensus       146 ~~~v~~~hnETstGv~~~~~~~i~~------~~lvVDa~Ss~g~~pid-----v~~~~-v~~--~saqK~l-GP~Gl~~v  210 (365)
T PLN02452        146 AKFVHICANETIHGVEFKDYPDVGN------VPLVADMSSNFLSKPVD-----VSKYG-VIY--AGAQKNV-GPSGVTIV  210 (365)
T ss_pred             CcEEEECCCCCCCcEecCcccccCC------CeEEEECCccccCcccC-----HHHcC-EEE--Eeccccc-CCCCeEEE
Confidence            457889999999999 699988863      89999999999999887     44432 544  6999988 59999999


Q ss_pred             EeeCcccccccccCCCCccCCCCceecC------CCC--CChHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHhCCC
Q 048438           84 WATNPEYLKNKATESKPVVDYKDWQITL------SRS--FRSLKLWFVIRNYGME-NLRHFLRSHVNMARLFERLVSGDK  154 (239)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~~l~~~g~~-g~~~~~~~~~~la~~l~~~l~~~~  154 (239)
                      ++++ +.+.........+.+   |....      .++  +..+.+..+++.+-.+ |++++.+++.++++++++.|++.+
T Consensus       211 ~vr~-~~l~~~~~~~~~~~~---~~~~~~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l~~~~  286 (365)
T PLN02452        211 IIRK-DLIGNARPITPGMLD---YKIHAENDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAIDESN  286 (365)
T ss_pred             EEcH-HHHhhcccCCCchhh---HHHHHhcCCccCChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9965 344332211112222   22111      122  2234555667777655 799999999999999999999887


Q ss_pred             CeEEE-cCC---CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEe
Q 048438          155 RFEVV-FPC---HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFAT  230 (239)
Q Consensus       155 g~~~~-~~~---~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~  230 (239)
                      ||-.. .++   ...+|+|++++.                       ++..++.+.+.++|.+.+.....-|.  +|+++
T Consensus       287 G~y~~~~~~~~rs~~~vsF~~~~~-----------------------~~~~~f~~~~~~~g~~~~~G~r~~gg--~R~s~  341 (365)
T PLN02452        287 GFYVCPVEKSVRSLMNVPFTLGGS-----------------------ELEAEFVKEAAKAGMVQLKGHRSVGG--MRASI  341 (365)
T ss_pred             CcccCCCChHHhCCeEEEEEcCCc-----------------------hhHHHHHHHHHHCCCcccCCccccCc--eEEEC
Confidence            87111 111   234899998763                       24558888999999998876655454  99998


Q ss_pred             cCCCCCc
Q 048438          231 GATLTEE  237 (239)
Q Consensus       231 ~~~~t~~  237 (239)
                      .|-.+.+
T Consensus       342 yna~~~~  348 (365)
T PLN02452        342 YNAMPLA  348 (365)
T ss_pred             cCCCCHH
Confidence            8766543

>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

Probab=99.61  E-value=1.8e-14  Score=123.81  Aligned_cols=195  Identities=18%  Similarity=0.162  Sum_probs=134.2

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccC--CC--CCcceEEEcCcccCCCccc
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFID--GV--EGADSFSLNAHKWFFATLD   79 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~--~~--~~~Ds~~~~~hK~l~~P~g   79 (239)
                      .+.+|+.-..=++.|.+-||++|+++|++|++|+.||-||+.|.+ .+..++..+  ++  ..+|+++.++.|.|++   
T Consensus       171 ~~~~IvtegVfSMdGdiApL~~l~~L~~ky~a~L~VDEAHa~Gv~-G~~GrG~~e~~g~~~~~vdi~~gTlsKAlGs---  246 (388)
T COG0156         171 RRKLIVTEGVFSMDGDIAPLPELVELAEKYGALLYVDEAHAVGVL-GPNGRGLAEHFGLEPEEVDIIVGTLGKALGS---  246 (388)
T ss_pred             CceEEEEeccccCCCCcCCHHHHHHHHHHhCcEEEEEcccccccc-CCCCccHHHHhCCCCccceEEEEEchhhhcc---
Confidence            456676666679999999999999999999999999999999976 444444322  22  2469999999999885   


Q ss_pred             ceEEEeeCc---ccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 048438           80 CCCLWATNP---EYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKR  155 (239)
Q Consensus        80 ~g~l~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g  155 (239)
                      .|.++..+.   +|+....+         .+-+..+-+ ..+.+...+++.+-  ...++.++..+++.++++.++.. +
T Consensus       247 ~Gg~v~g~~~~~d~L~~~ar---------~~ifStalpP~~aaa~~~al~~l~--~~~~~r~~L~~~~~~~~~~~~~~-~  314 (388)
T COG0156         247 SGGYIAGSAALIDYLRNRAR---------PFIFSTALPPAVAAAALAALRILE--EGPERRERLQELAAFFRSLLKAL-G  314 (388)
T ss_pred             cCceeeCcHHHHHHHHHhCC---------ceeccCCCCHHHHHHHHHHHHHHH--hCHHHHHHHHHHHHHHHHHHHhc-C
Confidence            455555443   34433321         122222222 23334445566543  22456667778899998666653 6


Q ss_pred             eEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcE---EEEEEEECCEeEEEEEecC
Q 048438          156 FEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKA---YMTNVVLGGIYAIRFATGA  232 (239)
Q Consensus       156 ~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~---~~~~~~~~g~~~lR~~~~~  232 (239)
                      +.+ .+..++|+.+.+.+                       ++...++.+.|.++|..   +..+|+.+|...||++++.
T Consensus       315 ~~~-~~s~s~I~pv~~gd-----------------------~~~a~~~s~~l~~~Gi~v~~i~~PTVp~gtarlRi~lta  370 (388)
T COG0156         315 LVL-LPSESPIIPVILGD-----------------------EERALEASRALLEEGIYVSAIRPPTVPKGTARLRITLTA  370 (388)
T ss_pred             Ccc-CCCCCCeeeeEeCC-----------------------HHHHHHHHHHHHHCCeeEeeecCCCCCCCcceEEEEecC
Confidence            665 46678999999876                       34455777788878554   4455777899999999999


Q ss_pred             CCCCcC
Q 048438          233 TLTEER  238 (239)
Q Consensus       233 ~~t~~~  238 (239)
                      .+|++|
T Consensus       371 ~ht~~~  376 (388)
T COG0156         371 AHTEED  376 (388)
T ss_pred             CCCHHH
Confidence            998764

>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]

Probab=99.60  E-value=1.5e-14  Score=117.65  Aligned_cols=203  Identities=13%  Similarity=0.083  Sum_probs=134.1

Q ss_pred             CccEEEEEecCCCCcccccC-hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccce
Q 048438            3 LIPLFLCATIGTTAITAVDP-LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCC   81 (239)
Q Consensus         3 ~~p~~vv~t~gtt~~G~i~p-l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g   81 (239)
                      +.|-+|.+++|.|.||.++| ++.+.++||+|++.|+||+.-+.|..++.     .+.+ ++|+.....+|.|++|.|.+
T Consensus       141 h~p~~vfv~hgdsSTgV~q~~~~~~g~lc~k~~~lllVD~VaSlggt~F~-----mDew-gVDvaytgSQKaL~aP~GLs  214 (385)
T KOG2862|consen  141 HKPKAVFVTHGDSSTGVLQDLLAISGELCHKHEALLLVDTVASLGGTEFE-----MDEW-GVDVAYTGSQKALGAPAGLS  214 (385)
T ss_pred             cCCceEEEEecCccccccchHHHHHHHHhhcCCeEEEEechhhcCCccce-----ehhh-cccEEEecchhhcCCCCCcc
Confidence            57899999999999999999 77789999999999999998888877764     3444 49999999999999999999


Q ss_pred             EEEeeCccccccccc--C--CCCccCCC----CceecC-CCCC---Ch----HHHHHHHHHhCHHHHHHHHHHHHHHHHH
Q 048438           82 CLWATNPEYLKNKAT--E--SKPVVDYK----DWQITL-SRSF---RS----LKLWFVIRNYGMENLRHFLRSHVNMARL  145 (239)
Q Consensus        82 ~l~~~~~~~l~~~~~--~--~~~~~~~~----~~~~~~-~~~~---~~----~~~~~~l~~~g~~g~~~~~~~~~~la~~  145 (239)
                      ++.+.+. .+.....  .  -..++|..    .|...+ .|.+   .+    ..+-.+|..+-.+|++++++++.+++++
T Consensus       215 iisfS~k-a~~~~~~rK~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I~eeGL~~~~~rH~e~s~~  293 (385)
T KOG2862|consen  215 IISFSDK-ALEAIRDRKTKPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALIAEEGLENSWRRHREMSKW  293 (385)
T ss_pred             eeecCHH-HHHHHhhccCCceEEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9776432 1111110  0  11233321    111111 1222   11    3445677778889999999999999999


Q ss_pred             HHHHHhCCCCeEEEcC---CCee-EEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEE-E
Q 048438          146 FERLVSGDKRFEVVFP---CHFA-VVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVV-L  220 (239)
Q Consensus       146 l~~~l~~~~g~~~~~~---~~~~-iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~-~  220 (239)
                      ++..|++. |+++...   ..++ +..+.++. +.               |   +.    .+.+.+..++.+.+..-- .
T Consensus       294 l~~~l~~~-GLq~fv~~e~~rlptvttv~vp~-gv---------------D---w~----dVv~~~~~~~~vei~gglg~  349 (385)
T KOG2862|consen  294 LKLSLEAL-GLQLFVVDEELRLPTVTTVKVPY-GV---------------D---WK----DVVAYAMSHYVVEIGGGLGP  349 (385)
T ss_pred             HHHHHHHh-CccceecChhhccCcceeeecCC-CC---------------C---HH----HHHHHHHHhcCEEeccccCC
Confidence            99999986 8886642   2233 33344433 21               1   12    445566666666554311 1


Q ss_pred             CCEeEEEEEecCCCCC
Q 048438          221 GGIYAIRFATGATLTE  236 (239)
Q Consensus       221 ~g~~~lR~~~~~~~t~  236 (239)
                      -...++|+.+..-|..
T Consensus       350 ~~gKv~RIGl~gcna~  365 (385)
T KOG2862|consen  350 TVGKVFRIGLLGCNAN  365 (385)
T ss_pred             CcccEEEEEEeeccCC
Confidence            1245889887655543

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=99.59  E-value=1.8e-14  Score=127.83  Aligned_cols=198  Identities=13%  Similarity=0.071  Sum_probs=120.8

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEE--ecccccccccCcccccccCCCCCcceEEEcCccc-----CCCc
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHV--DAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKW-----FFAT   77 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhv--D~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~-----l~~P   77 (239)
                      +.+|++++. |.+|.++|+++|+++||++|+|++|  |+. +.+.+..+      ..+ ++|++++++|||     +++|
T Consensus       205 t~~v~l~~p-n~tG~v~~l~~I~~~a~~~~~~~iv~~d~~-~~g~~~~~------~~~-~~D~~~~s~~k~~~~~~~~Gp  275 (447)
T PRK00451        205 TAAVVVQYP-NFFGVIEDLEEIAEIAHAGGALFIVGVDPV-SLGLLKPP------GEY-GADIVVGEGQPLGIPLSFGGP  275 (447)
T ss_pred             eEEEEEECC-CCCCeeCCHHHHHHHHHHCCCEEEEEcChH-HhccCCCc------ccC-CCCEEEECCCcCCCCCCCCCC
Confidence            456667765 8899999999999999999999999  644 33333222      112 499999999997     5556


Q ss_pred             ccceEEEeeCcccccccccC---C-----C---CccCCCC----ceecCCCC-CC------hHHHHHHHHHhCHHHHHHH
Q 048438           78 LDCCCLWATNPEYLKNKATE---S-----K---PVVDYKD----WQITLSRS-FR------SLKLWFVIRNYGMENLRHF  135 (239)
Q Consensus        78 ~g~g~l~~~~~~~l~~~~~~---~-----~---~~~~~~~----~~~~~~~~-~~------~~~~~~~l~~~g~~g~~~~  135 (239)
                       ++|+++++. .++......   .     +   ...+...    .....+.. ..      ++..+.+++.++.++++++
T Consensus       276 -g~G~l~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aaa~~l~~~~~~g~~~~  353 (447)
T PRK00451        276 -YLGFFATRK-KLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKATSNICTNQALNALAAAIYMSLLGPEGLREL  353 (447)
T ss_pred             -CchHHHhhH-HHHhhCCCCEeeeecccCCCeeeEeeccccccccccccccccccccHHHHHHHHHHHHHHHCHHHHHHH
Confidence             799988753 333221100   0     0   0000000    00000111 11      1233334667788999999


Q ss_pred             HHHHHHHHHHHHHHHhCCCCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEE-
Q 048438          136 LRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAY-  214 (239)
Q Consensus       136 ~~~~~~la~~l~~~l~~~~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~-  214 (239)
                      .++..++++++.+.|++++|++++..+..+.+++.++..                         ...+.++|.++|.+. 
T Consensus       354 ~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~v~~~~~-------------------------~~~~~~~L~~~gi~~~  408 (447)
T PRK00451        354 AEQNHQKAHYLAERLAEIGGVELFDGPFFNEFVVRLPKP-------------------------AEEVNEALLEKGILGG  408 (447)
T ss_pred             HHHHHHHHHHHHHHHhhcCCEEecCCCeEEEEEEecCCC-------------------------HHHHHHHHHhcCCCCC
Confidence            999999999999999998899887433344455554211                         125666676666541 


Q ss_pred             --EEEEEECCEeEEEEEecCCCCCcC
Q 048438          215 --MTNVVLGGIYAIRFATGATLTEER  238 (239)
Q Consensus       215 --~~~~~~~g~~~lR~~~~~~~t~~~  238 (239)
                        .......-..++|++++..+|.+|
T Consensus       409 ~~~~~~~~~~~~~~rvs~~~~~t~e~  434 (447)
T PRK00451        409 YDLGRYYPELGNHLLVCVTEKRTKED  434 (447)
T ss_pred             cccccccCCcCCEEEEecCCCCCHHH
Confidence              111111112589999988887654

>PLN02271 serine hydroxymethyltransferase

Probab=99.59  E-value=5.9e-14  Score=124.38  Aligned_cols=163  Identities=9%  Similarity=0.045  Sum_probs=111.8

Q ss_pred             CccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceE
Q 048438            3 LIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCC   82 (239)
Q Consensus         3 ~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~   82 (239)
                      .+|-+|++.+....  ...|+++|+++|+++|++++||+||.+|.+....+..   .+..+|+++++.||||.+|.| |+
T Consensus       297 ~rPKLII~g~Sayp--r~~D~~~i~eIAdevGA~LmvD~AH~aGLIa~g~~~s---P~~~aDvvt~TTHKtLrGPrG-G~  370 (586)
T PLN02271        297 FRPKILICGGSSYP--REWDYARFRQIADKCGAVLMCDMAHISGLVAAKECVN---PFDYCDIVTSTTHKSLRGPRG-GI  370 (586)
T ss_pred             cCCeEEEECchhcc--CcCCHHHHHHHHHHcCCEEEEECcccccccccCcCCC---CCcCCcEEEeCCcccCCCCCc-eE
Confidence            46777777554444  7889999999999999999999999999887654321   123599999999999999999 77


Q ss_pred             EEeeCccccc---ccccCCCC---ccCC--------CCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Q 048438           83 LWATNPEYLK---NKATESKP---VVDY--------KDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFE  147 (239)
Q Consensus        83 l~~~~~~~l~---~~~~~~~~---~~~~--------~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~  147 (239)
                      +++++. +..   .....++.   ..++        .+ .+++|.. ...+++..+++......++++.++..++++.|.
T Consensus       371 I~~r~~-~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfP-glqgGphn~~IAalAvalkea~~~efk~Ya~QVv~NAkaLA  448 (586)
T PLN02271        371 IFYRKG-PKLRKQGMLLSHGDDNSHYDFEEKINFAVFP-SLQGGPHNNHIAALAIALKQVATPEYKAYMQQVKKNAQALA  448 (586)
T ss_pred             EEeccc-ccccccCCccccccccccHHHHHHhhcccCC-ccccChhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence            777542 111   00000000   0000        11 3333433 224555666776655677889999999999999


Q ss_pred             HHHhCCCCeEEEcC-CCeeEEEEEEcCC
Q 048438          148 RLVSGDKRFEVVFP-CHFAVVCFRVSPL  174 (239)
Q Consensus       148 ~~l~~~~g~~~~~~-~~~~iv~f~~~~~  174 (239)
                      +.|.+. |++++.. .+..+|.+.+.+.
T Consensus       449 ~~L~~~-G~~vv~ggTdnHlvLvDl~~~  475 (586)
T PLN02271        449 SALLRR-KCRLVTGGTDNHLLLWDLTTL  475 (586)
T ss_pred             HHHHHC-CCeEeeCCCCcceeeecCccc
Confidence            999886 9998863 4567777777553

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.58  E-value=5.3e-14  Score=133.35  Aligned_cols=195  Identities=17%  Similarity=0.130  Sum_probs=128.2

Q ss_pred             EEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc-----c
Q 048438            6 LFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD-----C   80 (239)
Q Consensus         6 ~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g-----~   80 (239)
                      ++.++++-++.+|.+.|+++|+++||++|++++||+.+.+..+..+     ...+ +||+++.++|||+ +|.|     +
T Consensus       207 ~~~vlvq~p~~~G~i~d~~~i~~~ah~~Gal~~vda~~~Al~~l~~-----pge~-GaDi~vgs~qkfg-~P~g~GGP~a  279 (954)
T PRK05367        207 VFGVLLQYPGTSGEVRDYTALIAAAHARGALVAVAADLLALTLLTP-----PGEM-GADIAVGSAQRFG-VPMGFGGPHA  279 (954)
T ss_pred             EEEEEEecCCCCeeeccHHHHHHHHHHcCCEEEEEehhhhccCCCC-----hhhc-CCCEEEeeCcccC-CCCCCCCCCE
Confidence            4556677789999999999999999999999999997743333232     2233 4999999999994 4444     9


Q ss_pred             eEEEeeCcccccccccC-CCCccC--C-CCcee-----cCC-CCC-------ChHHHH-----HHHHHhCHHHHHHHHHH
Q 048438           81 CCLWATNPEYLKNKATE-SKPVVD--Y-KDWQI-----TLS-RSF-------RSLKLW-----FVIRNYGMENLRHFLRS  138 (239)
Q Consensus        81 g~l~~~~~~~l~~~~~~-~~~~~~--~-~~~~~-----~~~-~~~-------~~~~~~-----~~l~~~g~~g~~~~~~~  138 (239)
                      |+|++++ .+....... -+...+  - ..+.+     +.. ||-       ....+.     ..+..+|.+|++++.++
T Consensus       280 Gflavr~-~~~r~lpgrivG~s~d~~g~~~~~lalqtReqhiRrekaTsNict~qaL~a~~a~~y~~~~g~~Gl~~Ia~~  358 (954)
T PRK05367        280 AYFAVRD-AYKRSMPGRIVGVSVDAAGNPALRLALQTREQHIRREKATSNICTAQVLLAVMASMYAVYHGPEGLKAIARR  358 (954)
T ss_pred             EEEEECH-HHHhhCCCCeeeeecccCCCcccccccccccccccccccccccchHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            9999975 333222110 000000  0 00111     111 221       111122     12466899999999999


Q ss_pred             HHHHHHHHHHHHhCCCCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEE
Q 048438          139 HVNMARLFERLVSGDKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNV  218 (239)
Q Consensus       139 ~~~la~~l~~~l~~~~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~  218 (239)
                      .+.++.++.++|++ .|+++..+...+++.|+++. .                        ...+.++|.++|...-   
T Consensus       359 ~~~la~~l~~~L~~-~G~~~~~~~~f~~~~~~~~~-~------------------------~~~i~~~l~~~gi~~~---  409 (954)
T PRK05367        359 VHRLAAILAAGLRA-LGLEVVHDSFFDTLTVEVGG-D------------------------AAAVLARALAAGINLR---  409 (954)
T ss_pred             HHHHHHHHHHHHHh-cCcccCCCCCCCeEEEeCCC-C------------------------HHHHHHHHHHCCceec---
Confidence            99999999999987 69998877777888888642 1                        1256777777776641   


Q ss_pred             EECCEeEEEEEecCCCCCcC
Q 048438          219 VLGGIYAIRFATGATLTEER  238 (239)
Q Consensus       219 ~~~g~~~lR~~~~~~~t~~~  238 (239)
                       ......+|+|++-.+|.+|
T Consensus       410 -~~~~~~l~is~~e~~t~~d  428 (954)
T PRK05367        410 -RVDDDHVGISLDETTTRED  428 (954)
T ss_pred             -cccCCEEEEEecccCCHHH
Confidence             1123469999998888764

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.58  E-value=5.2e-14  Score=133.10  Aligned_cols=193  Identities=15%  Similarity=0.053  Sum_probs=130.6

Q ss_pred             EEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc-----ce
Q 048438            7 FLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD-----CC   81 (239)
Q Consensus         7 ~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g-----~g   81 (239)
                      +.++++-.+.+|.+.|+++|+++||++|++++| ||+..+...+..    ...+ +||+++.++|||+ +|.|     +|
T Consensus       236 ~~vlvq~P~~~G~v~dv~~I~~~ah~~GaL~iV-aad~lal~~l~~----pge~-GADi~vgsgqKwg-~P~G~GGP~aG  308 (993)
T PLN02414        236 CGVLVQYPATDGEVLDYAEFVKNAHANGVKVVM-ATDLLALTMLKP----PGEW-GADIVVGSAQRFG-VPMGYGGPHAA  308 (993)
T ss_pred             EEEEEecCCCCeEEcCHHHHHHHHHHcCCEEEE-EECHHHhcCCCC----Hhhc-cCcEEEECCCccc-cCCCCCCCCee
Confidence            344577778899999999999999999999999 998887776642    2233 4999999999997 4555     89


Q ss_pred             EEEeeCccccccccc-CCCCccCC---CCce-----ecCCCCC--------ChHHHHHH-----HHHhCHHHHHHHHHHH
Q 048438           82 CLWATNPEYLKNKAT-ESKPVVDY---KDWQ-----ITLSRSF--------RSLKLWFV-----IRNYGMENLRHFLRSH  139 (239)
Q Consensus        82 ~l~~~~~~~l~~~~~-~~~~~~~~---~~~~-----~~~~~~~--------~~~~~~~~-----l~~~g~~g~~~~~~~~  139 (239)
                      +|++++ ++...... .-+...+.   ..+.     -+..+|+        ...++++.     +..+|..|++++.++.
T Consensus       309 flavr~-~~~r~~PgriVG~s~d~~g~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~y~~~~g~~Gl~~Ia~ri  387 (993)
T PLN02414        309 FLATSQ-EYKRLMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRV  387 (993)
T ss_pred             EEEECH-HHHhhCCCcccCcccCCCCCcccccccccccchhhhcccccchhHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence            999975 33321110 00001110   0010     0111121        11233333     3456788999999999


Q ss_pred             HHHHHHHHHHHhCCCCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEE
Q 048438          140 VNMARLFERLVSGDKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVV  219 (239)
Q Consensus       140 ~~la~~l~~~l~~~~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~  219 (239)
                      ++++.+++++|.+ .|+++..++..++++|+++..                          ..+.++|.++|...-.   
T Consensus       388 ~~la~~l~~~L~~-~G~~~~~~~~f~~vt~~~~~~--------------------------~~v~~~L~~~gI~l~~---  437 (993)
T PLN02414        388 HGLAGVFAAGLKK-LGFQVQSLPFFDTVKVKCSDA--------------------------DAIADAAAKVGINLRV---  437 (993)
T ss_pred             HHHHHHHHHHHhh-cCCccCCCCCcCeEEEecCCH--------------------------HHHHHHHHHCCCeeEE---
Confidence            9999999999987 589998888889999997421                          2566777777763221   


Q ss_pred             ECCEeEEEEEecCCCCCcC
Q 048438          220 LGGIYAIRFATGATLTEER  238 (239)
Q Consensus       220 ~~g~~~lR~~~~~~~t~~~  238 (239)
                      . +...+|+|++-.+|.+|
T Consensus       438 ~-~~~~lrvs~~e~~T~ed  455 (993)
T PLN02414        438 V-DANTVTVSFDETTTLED  455 (993)
T ss_pred             e-cCCeEEEEeeccCCHHH
Confidence            1 12359999999998765

>PLN02721 threonine aldolase

Probab=99.58  E-value=5.6e-14  Score=120.62  Aligned_cols=196  Identities=15%  Similarity=0.131  Sum_probs=114.3

Q ss_pred             ccEEEEEecC-CCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc
Q 048438            4 IPLFLCATIG-TTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD   79 (239)
Q Consensus         4 ~p~~vv~t~g-tt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g   79 (239)
                      .+.+|+.+.. ++.+|.+.|   +++|.++|+++|+++|+|+||..+......... ......+|++++++|||+++|.|
T Consensus       137 ~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~~~-~~~~~~~d~~~~s~sK~l~~~~G  215 (353)
T PLN02721        137 TTRLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGVPV-HRLVKAADSVSVCLSKGLGAPVG  215 (353)
T ss_pred             cceEEEEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCCCH-HHHhhhCCEEEEecccccCCcee
Confidence            4556666554 455788655   789999999999999999998654321111110 11112589999999999988755


Q ss_pred             ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE-
Q 048438           80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEV-  158 (239)
Q Consensus        80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~-  158 (239)
                        .+++.+++++......    ..    ...++.+........++.  +.+...+.+++..++++++.+.|++++++++ 
T Consensus       216 --~~~~~~~~~~~~~~~~----~~----~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~  283 (353)
T PLN02721        216 --SVIVGSKSFIRKAKRL----RK----TLGGGMRQVGVLAAAALV--ALQENVPKLEDDHKKAKLLAEGLNQIKGLRVN  283 (353)
T ss_pred             --eEEecCHHHHHhHHHH----HH----hcCCCeehhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEe
Confidence              3333455544332110    00    000111111111111111  1122223445556788999999999888876 


Q ss_pred             EcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCCc
Q 048438          159 VFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTEE  237 (239)
Q Consensus       159 ~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~  237 (239)
                      +.++..+++.|+++...                     ......+.++|.++|......    +..++|++++..++.+
T Consensus       284 ~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~L~~~gi~v~~~----~~~~lR~~~~~~~~~~  337 (353)
T PLN02721        284 VAAVETNIVYFDITDGS---------------------RITAEKLCKSLEEHGVLLMPG----NSSRIRVVTHHQISDS  337 (353)
T ss_pred             cCCccceEEEEEccCCc---------------------cccHHHHHHHHHhCCcEEecC----CCceEEEEecCcCCHH
Confidence            55677888888886420                     001236777887677665532    4568999987665544

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=99.57  E-value=9e-14  Score=120.43  Aligned_cols=190  Identities=14%  Similarity=0.098  Sum_probs=114.1

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCccccccc--CCCCCcceEEEcCcccCCCcccce
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFI--DGVEGADSFSLNAHKWFFATLDCC   81 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~--~~~~~~Ds~~~~~hK~l~~P~g~g   81 (239)
                      ...+|++++.++++|.+.|+++|.++|+++|+++|||+||+.|.+..+- +...  .+....|.+..+++|.+ +|.|+|
T Consensus       143 ~~~~v~v~~v~s~~G~i~pl~eI~~l~~~~~~~livDea~~~G~~g~~g-~g~~~~~~~~~~~~~~~tlsK~~-g~~G~~  220 (370)
T PRK05937        143 GRIFIFVCSVYSFKGTLAPLEQIIALSKKYHAHLIVDEAHAMGIFGDDG-KGFCHSLGYENFYAVLVTYSKAL-GSMGAA  220 (370)
T ss_pred             CcEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCC-CchHHhhCCCCCcEEEEechhhh-hcCceE
Confidence            3456777889999999999999999999999999999999988765431 1100  12222345677888985 578888


Q ss_pred             EEEeeCc-ccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Q 048438           82 CLWATNP-EYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVV  159 (239)
Q Consensus        82 ~l~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~  159 (239)
                      +++.++. ..+....         ..+.+..+.. ...+++..+++.+..++ +...++..++.+++.+.|... +    
T Consensus       221 vl~~~~~~~~~~~~~---------~~~~~s~~~~~~~~~a~~aal~~l~~~~-~~~~~~l~~l~~~l~~~l~~~-~----  285 (370)
T PRK05937        221 LLSSSEVKQDLMLNS---------PPLRYSTGLPPHLLISIQVAYDFLSQEG-ELARKQLFRLKEYFAQKFSSA-A----  285 (370)
T ss_pred             EEcCHHHHHHHHHhC---------CCCeecCCCCHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHhcCCC-C----
Confidence            7765321 1111000         0112222222 22333444555543333 344567778888988887542 1    


Q ss_pred             cCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCCcC
Q 048438          160 FPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTEER  238 (239)
Q Consensus       160 ~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~  238 (239)
                       +  ..++.|.+++.                      +  ...+.+.|.++|. ++.........++|++++.++|.+|
T Consensus       286 -~--~~~~~i~~~~~----------------------~--~~~~~~~L~~~gi-~v~~~~~~~~~~iRis~~~~~t~ed  336 (370)
T PRK05937        286 -P--GCVQPIFLPGI----------------------S--EQELYSKLVETGI-RVGVVCFPTGPFLRVNLHAFNTEDE  336 (370)
T ss_pred             -C--CCEEEEEeCCh----------------------h--HHHHHHHHHHCCe-eEEeeCCCCCCEEEEEcCCCCCHHH
Confidence             1  11234555431                      1  1356667766765 4544333345689999999988775

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=99.57  E-value=1.5e-14  Score=123.36  Aligned_cols=195  Identities=19%  Similarity=0.102  Sum_probs=113.9

Q ss_pred             ccEEEEEecCCCCccc---ccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438            4 IPLFLCATIGTTAITA---VDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC   80 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~---i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~   80 (239)
                      .|-+|+++..++ +|.   .+++++|+++|+++|+++|||+||..+....... ........+|+++.++|||++.|.|+
T Consensus       127 ~~~~v~l~~p~n-~g~~~~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~-~~~~~~~~~d~~~~s~sK~~~~~~g~  204 (338)
T cd06502         127 PPSLVSLENTTE-GGTVYPLDELKAISALAKENGLPLHLDGARLANAAAALGV-ALKTYKSGVDSVSFCLSKGGGAPVGA  204 (338)
T ss_pred             cceEEEEEeecC-CccccCHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcCC-CHHHHHhcCCEEEEeccccCCCccce
Confidence            456666666665 464   5678889999999999999999985432211100 00000124899999999999887543


Q ss_pred             eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc
Q 048438           81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF  160 (239)
Q Consensus        81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~  160 (239)
                        +++.+++.+.......      ..+  ..+.+..++..+.++..+...++.++.++..++++++.+.|++. ++. +.
T Consensus       205 --~~~~~~~~~~~~~~~~------~~~--~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~-~~  272 (338)
T cd06502         205 --VVVGNRDFIARARRRR------KQA--GGGMRQSGFLAAAGLAALENDLWLRRLRHDHEMARRLAEALEEL-GGL-ES  272 (338)
T ss_pred             --EEECCHHHHHHHHHHH------HHh--CCChhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhc-CCC-cc
Confidence              4433444433221100      000  00111122333334444444456677788889999999999987 554 34


Q ss_pred             CCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHH---hcCcEEEEEEEECCEeEEEEEecCCCCCc
Q 048438          161 PCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESIN---ASGKAYMTNVVLGGIYAIRFATGATLTEE  237 (239)
Q Consensus       161 ~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~---~~g~~~~~~~~~~g~~~lR~~~~~~~t~~  237 (239)
                      ++..|++.++++..                      +.....+.+++.   ++|..+..   . +..++|++++..+|++
T Consensus       273 ~~~~~~~~v~~~~~----------------------~~~~~~l~~~l~~~~~~gi~~~~---~-~~~~lRi~~~~~~~~~  326 (338)
T cd06502         273 EVQTNIVLLDPVEA----------------------NAVFVELSKEAIERRGEGVLFYA---W-GEGGVRFVTHWDTTEE  326 (338)
T ss_pred             cccCCeEEEecCCc----------------------cHHHHHHHHHHHHhhhCCEEEEe---c-CCCeEEEEeecCCCHH
Confidence            66789998887532                      122223333333   45554332   2 2278999998777765


Q ss_pred             C
Q 048438          238 R  238 (239)
Q Consensus       238 ~  238 (239)
                      |
T Consensus       327 ~  327 (338)
T cd06502         327 D  327 (338)
T ss_pred             H
Confidence            3

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>cd00609 AAT_like Aspartate aminotransferase family

Probab=99.57  E-value=5.1e-14  Score=120.10  Aligned_cols=197  Identities=16%  Similarity=0.044  Sum_probs=122.6

Q ss_pred             ccEEEEEecCCCCcccccChhHHH---HHHHHhCCEEEEecccccccccCcccc--cccCCCCCcceEEEcCcccCC-Cc
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLC---DVAKQFGIWVHVDAAYAGSACIFPEFR--HFIDGVEGADSFSLNAHKWFF-AT   77 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~---~i~~~~gi~lhvD~A~~~~~~~~~~~~--~~~~~~~~~Ds~~~~~hK~l~-~P   77 (239)
                      .|-+|++++.++.+|.+.|++++.   ++|+++|++++||+||+++........  .... ...+|+++.++||+++ .+
T Consensus       132 ~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~K~~~~~g  210 (350)
T cd00609         132 KTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGEPPPALALLD-AYERVIVLRSFSKTFGLPG  210 (350)
T ss_pred             cceEEEEECCCCCCCcccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCcccccccCcC-ccCcEEEEeecccccCCcc
Confidence            466888888999999999866665   899999999999999987654322110  0011 1248999999999998 45


Q ss_pred             ccceEEEeeCcccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCe
Q 048438           78 LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRF  156 (239)
Q Consensus        78 ~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~  156 (239)
                      .++|+++++++.+........       .+. ..+.. .....+..+++... +++++..++..++++++.+.|.+.+..
T Consensus       211 ~~~G~i~~~~~~~~~~~~~~~-------~~~-~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~  281 (350)
T cd00609         211 LRIGYLIAPPEELLERLKKLL-------PYT-TSGPSTLSQAAAAAALDDGE-EHLEELRERYRRRRDALLEALKELGPL  281 (350)
T ss_pred             cceEEEecCHHHHHHHHHHHH-------Hhc-ccCCChHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            668888875534443332110       000 01111 12233333344322 567777888889999999999987554


Q ss_pred             EEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEEC--CEeEEEEEecCC
Q 048438          157 EVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLG--GIYAIRFATGAT  233 (239)
Q Consensus       157 ~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~--g~~~lR~~~~~~  233 (239)
                      .+..+...+.+.+.+++..                       ..+.+.+.|.+.|..........  +..++|++++.+
T Consensus       282 ~~~~~~~g~~~~~~~~~~~-----------------------~~~~~~~~l~~~gi~i~~~~~~~~~~~~~iRi~~~~~  337 (350)
T cd00609         282 VVVKPSGGFFLWLDLPEGD-----------------------DEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFATP  337 (350)
T ss_pred             cccCCCccEEEEEecCCCC-----------------------hHHHHHHHHHhCCEEEecccccccCCCCeEEEEeeCC
Confidence            4333445566777765421                       01134445555565544433333  677999999887

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>PRK12566 glycine dehydrogenase; Provisional

Probab=99.56  E-value=7.7e-14  Score=130.05  Aligned_cols=203  Identities=15%  Similarity=0.075  Sum_probs=126.4

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLW   84 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~   84 (239)
                      ..+|++++.++..+..+|+++|+++||++|++++|||||..+...++..    ..+ ++|++++++|||+++|.|.|..+
T Consensus       642 laaVmiT~Pnt~Gv~e~~V~eI~~iah~~Galv~vDgA~~~a~~~l~~P----g~~-GADi~~~s~HKtf~~P~G~GGP~  716 (954)
T PRK12566        642 LSCLMITYPSTHGVYEEGIREICEVVHQHGGQVYMDGANLNAQVGLARP----ADI-GADVSHMNLHKTFCIPHGGGGPG  716 (954)
T ss_pred             EEEEEEEecCcCceecchHHHHHHHHHHcCCEEEEEeeChhhccCCCCh----hhc-CCCEEEecCCcccCcCccCCCCc
Confidence            4567788888877778889999999999999999999998766655421    123 59999999999999999999988


Q ss_pred             eeC---cccccccccCCCCccCC-CCceecCCCC---CC----hHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC
Q 048438           85 ATN---PEYLKNKATESKPVVDY-KDWQITLSRS---FR----SLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD  153 (239)
Q Consensus        85 ~~~---~~~l~~~~~~~~~~~~~-~~~~~~~~~~---~~----~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~  153 (239)
                      ++.   .+.+.+.....+. .+. ....-++++.   +.    +...|..++.+|.+ +.+.......+++|+.++|++.
T Consensus       717 vG~iav~~~L~pfLp~~P~-~d~~G~~~r~ga~S~~~~gsa~~l~~A~~Yi~~lG~e-Lk~aa~~ailnAnYla~rL~~~  794 (954)
T PRK12566        717 MGPIGVRAHLAPFVANHPV-VPVEGPDPNNGAVSAAPWGSASILPISWMYIAMMGPQ-LADASEVAILSANYLANQLGGA  794 (954)
T ss_pred             cchhhhhhhhhhhccCCCC-cCCCCCCCCCCceeecccchHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHhHhh
Confidence            853   1111111111110 010 0000011121   11    24455667888988 7776677789999999999873


Q ss_pred             CCeEEEcCC-------CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEE
Q 048438          154 KRFEVVFPC-------HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAI  226 (239)
Q Consensus       154 ~g~~~~~~~-------~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~l  226 (239)
                        +++...+       +..+.++.++...              ..+       ...+.++|.+.|..... ..+.+...+
T Consensus       795 --~~v~~~~~~~~~~hEfii~~~~l~~~~--------------g~~-------~~dvakRL~d~Gihapt-~~fPv~~~L  850 (954)
T PRK12566        795 --FPVLYRGRNERVAHECILDLRPLKAQT--------------GIS-------EEDVAKRLMDYGFHAPT-MSFPVPGTL  850 (954)
T ss_pred             --CCCCcCCCCCCeeeEEEEEcccccccc--------------CCC-------HHHHHHHHHHCCcEEeE-EeeccCCEE
Confidence              4433321       1233333333210              001       12466677755554222 345567789


Q ss_pred             EEEecCCCCCcC
Q 048438          227 RFATGATLTEER  238 (239)
Q Consensus       227 R~~~~~~~t~~~  238 (239)
                      |++++-.++.+|
T Consensus       851 mIepTE~eskeE  862 (954)
T PRK12566        851 MVEPTESESKAE  862 (954)
T ss_pred             EEEeeeeCCHHH
Confidence            999998887664

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=99.54  E-value=2.2e-13  Score=116.73  Aligned_cols=200  Identities=14%  Similarity=0.007  Sum_probs=120.5

Q ss_pred             CccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccc--cccCCCCCcceEEEcCcccCCCcccc
Q 048438            3 LIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFR--HFIDGVEGADSFSLNAHKWFFATLDC   80 (239)
Q Consensus         3 ~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~--~~~~~~~~~Ds~~~~~hK~l~~P~g~   80 (239)
                      .++.+|+++...+.+|.+.|+++|+++|+++|+++++|++|+.+.+......  .......++|+++.++||+++. .| 
T Consensus       131 ~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~-~g-  208 (349)
T cd06454         131 YGKKLIVTEGVYSMDGDIAPLPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGA-VG-  208 (349)
T ss_pred             CCCeEEEEeccccCCCCccCHHHHHHHHHHcCCEEEEEccccccccCCCCCChhhhccccccCcEEEeechhhhcc-cC-
Confidence            4577888888889999999999999999999999999999986655311000  0011112589999999999875 33 


Q ss_pred             eEEEeeCcccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Q 048438           81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVV  159 (239)
Q Consensus        81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~  159 (239)
                      |+++. ++.++.......      ..+....+.. ...+.+..+++.+..  .+++.++..++++++.+.|.+. |++++
T Consensus       209 G~i~~-~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~l~~~l~~~-g~~~~  278 (349)
T cd06454         209 GYIAG-SKELIDYLRSYA------RGFIFSTSLPPAVAAAALAALEVLQG--GPERRERLQENVRYLRRGLKEL-GFPVG  278 (349)
T ss_pred             CEEEC-CHHHHHHHHHhc------hhhhccCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHhc-CCccc
Confidence            55554 344432221100      0011111111 112233344544322  3556777889999999999886 78776


Q ss_pred             cCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEE---ECCEeEEEEEecCCCCC
Q 048438          160 FPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVV---LGGIYAIRFATGATLTE  236 (239)
Q Consensus       160 ~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~---~~g~~~lR~~~~~~~t~  236 (239)
                      .++...+.++.+++.                       ....++.+.|.++|........   ..+..++|++++.++|.
T Consensus       279 ~~~~~~~~~~~~~~~-----------------------~~~~~~~~~L~~~gI~~~~~~~~~~~~~~~~iRi~~~~~~~~  335 (349)
T cd06454         279 GSPSHIIPPLIGDDP-----------------------AKAVAFSDALLERGIYVQAIRYPTVPRGTARLRISLSAAHTK  335 (349)
T ss_pred             CCCCCcEEEEeCCCh-----------------------HHHHHHHHHHHhCCceEEEecCCccCCCCCeEEEEEeCCCCH
Confidence            554444444543321                       1123677777777555433211   12346899998877765


Q ss_pred             c
Q 048438          237 E  237 (239)
Q Consensus       237 ~  237 (239)
                      +
T Consensus       336 ~  336 (349)
T cd06454         336 E  336 (349)
T ss_pred             H
Confidence            4

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=99.53  E-value=3.3e-13  Score=118.13  Aligned_cols=198  Identities=15%  Similarity=0.164  Sum_probs=120.9

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccc--cCCC-CCcceEEEcCcccCCCcccc
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--IDGV-EGADSFSLNAHKWFFATLDC   80 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~~~~-~~~Ds~~~~~hK~l~~P~g~   80 (239)
                      .+.+|++....+++|.+.|+++|.++|++||++++||+||+.|.+ .+.....  ..++ ..+|.++.++.|.++.+.  
T Consensus       177 ~~~~v~~e~~~~~~G~~~~l~~i~~l~~~~~~~livDea~~~G~~-g~~g~g~~~~~~~~~~~div~~t~sKa~g~~G--  253 (402)
T TIGR01821       177 RPKIIAFESVYSMDGDIAPIEEICDLADKYGALTYLDEVHAVGLY-GPRGGGIAERDGLMHRIDIIEGTLAKAFGVVG--  253 (402)
T ss_pred             CCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEeCccccccc-CCCCCccchhccCCCCCeEEEEechhhhccCC--
Confidence            456788888899999999999999999999999999999986643 1211111  1121 247889899999987643  


Q ss_pred             eEEEeeCcccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Q 048438           81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVV  159 (239)
Q Consensus        81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~  159 (239)
                      |++.. +++.........      ..+.+..+.. ..+.....+++.+...  ....++..++++++.+.|++. |++++
T Consensus       254 G~i~~-~~~~~~~l~~~~------~~~~~t~~~~~~~~aaa~aaL~~~~~~--~~~~~~~~~~~~~l~~~L~~~-g~~~~  323 (402)
T TIGR01821       254 GYIAA-SRKLIDAIRSYA------PGFIFTTSLPPAIAAGATASIRHLKES--QDLRRAHQENVKRLKNLLEAL-GIPVI  323 (402)
T ss_pred             ceeec-CHHHHHHHHHhC------cCceecCcCCHHHHHHHHHHHHHhhcC--HHHHHHHHHHHHHHHHHHHHc-CCCcC
Confidence            44443 333322211000      0011111111 1123333445443222  334455568899999999886 77765


Q ss_pred             cCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEE----EECCEeEEEEEecCCCC
Q 048438          160 FPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNV----VLGGIYAIRFATGATLT  235 (239)
Q Consensus       160 ~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~----~~~g~~~lR~~~~~~~t  235 (239)
                       ++..+++.+.++.                       ......+.++|.++..+++.+.    ...|..++|++++..+|
T Consensus       324 -~~~~~i~~i~~~~-----------------------~~~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~~~lRis~~~~~t  379 (402)
T TIGR01821       324 -PNPSHIVPVIIGD-----------------------AALCKKVSDLLLNKHGIYVQPINYPTVPRGTERLRITPTPAHT  379 (402)
T ss_pred             -CCCCCEEEEEeCC-----------------------HHHHHHHHHHHHhcCCEEEEeECCCCCCCCCceEEEEeCCCCC
Confidence             4467788776542                       1123467777765544545442    23455789999998888


Q ss_pred             CcC
Q 048438          236 EER  238 (239)
Q Consensus       236 ~~~  238 (239)
                      .+|
T Consensus       380 ~ed  382 (402)
T TIGR01821       380 DKM  382 (402)
T ss_pred             HHH
Confidence            764

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type

Probab=99.53  E-value=6.8e-14  Score=120.59  Aligned_cols=207  Identities=14%  Similarity=0.077  Sum_probs=130.2

Q ss_pred             EEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEEeeC
Q 048438            8 LCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWATN   87 (239)
Q Consensus         8 vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~   87 (239)
                      |+++|..|.||+.+|+++++..+  +++.++||+.-+.+..+++     .+   .+|++..+++|+|++|+|.+++.+++
T Consensus       131 v~~vhnETSTGv~npv~~i~~~~--~~~lliVDavSs~g~~~l~-----~d---~iDv~~tgsQK~L~~ppGls~v~vs~  200 (374)
T TIGR01365       131 VVFTWNGTTSGVRVPNGDFIPAD--REGLTICDATSAAFAQDLD-----YH---KLDVVTFSWQKVLGGEGAHGMLILSP  200 (374)
T ss_pred             EEEecCCCchheecccccccccc--CCCcEEEEccchhcCCCCC-----hh---HCcEEEEechhccCCCCceEEEEECH
Confidence            67999999999999998776432  5899999999988888886     44   39999999999999999999999964


Q ss_pred             ccccccccc-C----CCCccCCCCc---e---ecCCCCCCh--HHHHH---HHHHhCHH-HHHHHHHHHHHHHHHHHHHH
Q 048438           88 PEYLKNKAT-E----SKPVVDYKDW---Q---ITLSRSFRS--LKLWF---VIRNYGME-NLRHFLRSHVNMARLFERLV  150 (239)
Q Consensus        88 ~~~l~~~~~-~----~~~~~~~~~~---~---~~~~~~~~~--~~~~~---~l~~~g~~-g~~~~~~~~~~la~~l~~~l  150 (239)
                      . .+..... .    ...+.++...   .   .....++..  ..++.   +++.+-.+ |++++.+++.++++.+++.+
T Consensus       201 ~-Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~~i~~egGle~~~~Rh~~~a~~l~~~l  279 (374)
T TIGR01365       201 R-AVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGSTINTPSMLCVEDWLDALKWAESIGGLKPLIARADDNLAVLEAFV  279 (374)
T ss_pred             H-HHHHHhhcCCCCCChhhhccccccchhhhhhcCCCCCChHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHH
Confidence            3 2221110 0    0011111000   0   011223221  22332   34444454 79999999999999999999


Q ss_pred             hCCCCeEEEcC-C--Cee-EEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEE
Q 048438          151 SGDKRFEVVFP-C--HFA-VVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAI  226 (239)
Q Consensus       151 ~~~~g~~~~~~-~--~~~-iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~l  226 (239)
                      ++...++++.. +  +++ ++++.+++++...            .+.+....+...+++.|.++|..+...........+
T Consensus       280 ~~lg~l~~~~~~~~~rS~tvt~v~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~~gi~i~~G~~~~~~~~f  347 (374)
T TIGR01365       280 AKNNWIHFLAETPEIRSNTSVCLKVVDPAIDA------------LDEDAQADFAKELISTLEKEGVAYDIGSYRDAPSGL  347 (374)
T ss_pred             HHCCCcccCCCChhhcCCCeEEEEeCCccccc------------cccchhhHHHHHHHHHHHHCCEEEeccccccCCCce
Confidence            99733777753 1  333 5667775432100            000001222346778888887766644433223689


Q ss_pred             EEEecCCCCCc
Q 048438          227 RFATGATLTEE  237 (239)
Q Consensus       227 R~~~~~~~t~~  237 (239)
                      |+..+...+.+
T Consensus       348 RIg~~G~i~~~  358 (374)
T TIGR01365       348 RIWCGATVEKS  358 (374)
T ss_pred             EEecCCcCCHH
Confidence            99987766543

This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=99.51  E-value=3.5e-13  Score=115.60  Aligned_cols=158  Identities=13%  Similarity=0.100  Sum_probs=93.9

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEc--CcccCCCcccceE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLN--AHKWFFATLDCCC   82 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~--~hK~l~~P~g~g~   82 (239)
                      +-+|+.+   +.+|...|+++|.++|+++|+++++|+||+.+.......   ...  ..|+.+++  .|||+.++. .|+
T Consensus       107 ~~~v~~~---~~~G~~~~~~~i~~l~~~~~i~li~D~a~~~g~~~~~~~---~~~--~~d~~~~S~~~~K~~~~~~-gg~  177 (352)
T cd00616         107 TKAIIPV---HLYGNPADMDAIMAIAKRHGLPVIEDAAQALGATYKGRK---VGT--FGDAGAFSFHPTKNLTTGE-GGA  177 (352)
T ss_pred             CeEEEEE---CCCCCcCCHHHHHHHHHHcCCeEEEECCCCCCCeECCEE---ccc--CcceeEEcCCCCCCCcccC-ceE
Confidence            3455554   368999999999999999999999999999876533210   111  14666666  559985554 355


Q ss_pred             EEeeCccccccccc--CCCCccC---CCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438           83 LWATNPEYLKNKAT--ESKPVVD---YKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE  157 (239)
Q Consensus        83 l~~~~~~~l~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~  157 (239)
                      ++.++++.+.....  ..+....   +.........+...+.....+  ...+.++++.++..++++++.+.|++++|++
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~--~~l~~~~~~~~~~~~~~~~~~~~L~~~~g~~  255 (352)
T cd00616         178 VVTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYRLSEIQAAIGL--AQLEKLDEIIARRREIAERYKELLADLPGIR  255 (352)
T ss_pred             EEECCHHHHHHHHHHHHcCCCCCCCccccceeeeccCcCHHHHHHHH--HHHHhhHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence            66555443322110  0000000   000011111112222222222  2345667778888899999999999989999


Q ss_pred             EEcCC-----CeeEEEEEEcC
Q 048438          158 VVFPC-----HFAVVCFRVSP  173 (239)
Q Consensus       158 ~~~~~-----~~~iv~f~~~~  173 (239)
                      ++.++     ...+++|.+++
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~  276 (352)
T cd00616         256 LPDVPPGVKHSYHLYVIRLDP  276 (352)
T ss_pred             CCCCCCCCceeeEEEEEEECC
Confidence            87643     24688888864

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme

Probab=99.50  E-value=5.3e-13  Score=115.34  Aligned_cols=135  Identities=14%  Similarity=0.070  Sum_probs=83.0

Q ss_pred             EecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEEeeCcc
Q 048438           10 ATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWATNPE   89 (239)
Q Consensus        10 ~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~   89 (239)
                      ++...+.+|.+.|+++|+++||+||+++++|+||+..   +..    ...+ ++|++++|+||++++|. .|+++. +++
T Consensus       155 v~~~~~~~g~~~~~~~i~~~a~~~gi~vivD~a~~~~---~~~----~~~~-g~D~~~~S~~K~l~gp~-~G~l~~-~~~  224 (363)
T TIGR01437       155 IKSHHCVQKSMLSVEDAAQVAQEHNLPLIVDAAAEED---LQK----YYRL-GADLVIYSGAKAIEGPT-SGLVLG-KKK  224 (363)
T ss_pred             EecCCCCcCCcCCHHHHHHHHHHcCCeEEEECCCCCc---hHH----HHHc-CCCEEEEeCCcccCCCc-eEEEEE-cHH
Confidence            4455678999999999999999999999999999721   110    1112 38999999999999998 677765 444


Q ss_pred             cccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc
Q 048438           90 YLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF  160 (239)
Q Consensus        90 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~  160 (239)
                      .+...........    ...+.+. ...+++..++..+-..+. +.++...+.++++.++|++++|++++.
T Consensus       225 ~i~~~~~~~~~~~----~~~~~~~-~~~~gl~aAl~~~~~~~~-~~~~~~~~~~~~l~~~L~~i~g~~~~~  289 (363)
T TIGR01437       225 YIEWVKLQSKGIG----RAMKVGK-ENILGLTAALEQYLSTGK-ESGAEMVAKLTPFIEALNTLKGVSASI  289 (363)
T ss_pred             HHHHHHhccCCCc----ceeccCH-HHHHHHHHHHHHHHccCc-ccHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence            4433211000000    0001000 112445555554422222 222233345668999999999999874

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.

>PRK09064 5-aminolevulinate synthase; Validated

Probab=99.50  E-value=7.1e-13  Score=116.20  Aligned_cols=198  Identities=15%  Similarity=0.112  Sum_probs=121.4

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccc--cCCC-CCcceEEEcCcccCCCcccc
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--IDGV-EGADSFSLNAHKWFFATLDC   80 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~~~~-~~~Ds~~~~~hK~l~~P~g~   80 (239)
                      .+.+|++....+++|.+.|+++|.++|++||++++||.||+.|.+ .+.....  ..++ +.+|.++.+++|.++.+ | 
T Consensus       178 ~~~~v~~~~v~s~~G~~~~l~~i~~l~~~~~~~livDEa~~~G~~-g~~g~g~~~~~~~~~~~div~~t~sKa~g~~-G-  254 (407)
T PRK09064        178 RPKLIAFESVYSMDGDIAPIAEICDLADKYNALTYLDEVHAVGMY-GPRGGGIAERDGLMDRIDIIEGTLAKAFGVM-G-  254 (407)
T ss_pred             CCeEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEECCCccccc-CCCCCChHHhcCCCCCCeEEEEecchhhhcc-C-
Confidence            456788888889999999999999999999999999999985533 1111111  1122 24799999999998654 3 


Q ss_pred             eEEEeeCcccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Q 048438           81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVV  159 (239)
Q Consensus        81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~  159 (239)
                      |+++. +++.+.......      ..+.+..+.. ..+.....+++.+...  ....++..++++++.+.|++. |++++
T Consensus       255 G~~~~-~~~~~~~l~~~~------~~~~~t~~~~~~~~~aa~~al~~~~~~--~~~~~~~~~~~~~l~~~L~~~-g~~~~  324 (407)
T PRK09064        255 GYIAG-SAALVDAVRSYA------PGFIFTTSLPPAIAAAALASIRHLKES--NEERERHQERAAKLKAALDAA-GIPVM  324 (407)
T ss_pred             ceEec-CHHHHHHHHHhC------ccccccCcCCHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHc-CCCCC
Confidence            55543 443332211000      0111111111 2223334445544322  233566778999999999885 78765


Q ss_pred             cCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEE----EECCEeEEEEEecCCCC
Q 048438          160 FPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNV----VLGGIYAIRFATGATLT  235 (239)
Q Consensus       160 ~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~----~~~g~~~lR~~~~~~~t  235 (239)
                      . +..+++.+.++..                       .....+.++|.++..+++...    ...|..++|++++..+|
T Consensus       325 ~-~~~~iv~i~~~~~-----------------------~~~~~l~~~L~~~~gi~v~~~~~p~~~~~~~~lRis~~~~~t  380 (407)
T PRK09064        325 P-NESHIVPVMVGDP-----------------------EKCKKASDMLLEEHGIYVQPINYPTVPRGTERLRITPTPFHT  380 (407)
T ss_pred             C-CCCCEEEEEeCCH-----------------------HHHHHHHHHHHHhCCEEEeeECCCCCCCCCceEEEEeCCCCC
Confidence            3 4577888876431                       123366677765534444332    22355789999998888


Q ss_pred             CcC
Q 048438          236 EER  238 (239)
Q Consensus       236 ~~~  238 (239)
                      .+|
T Consensus       381 ~ed  383 (407)
T PRK09064        381 DEM  383 (407)
T ss_pred             HHH
Confidence            764

>PLN02509 cystathionine beta-lyase

Probab=99.47  E-value=1.4e-12  Score=115.43  Aligned_cols=148  Identities=18%  Similarity=0.241  Sum_probs=107.6

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ceE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCC   82 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~   82 (239)
                      +-+|++...+|.+|.+.|+++|+++||++|++++||.||+.+....+     . +. ++|+++++++||+++|.+  .|+
T Consensus       218 TklV~lesPsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A~a~~~~~~p-----l-~~-gaDivv~S~tK~l~G~gdv~gG~  290 (464)
T PLN02509        218 TKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMSPVLSRP-----L-EL-GADIVMHSATKFIAGHSDVMAGV  290 (464)
T ss_pred             CeEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECCccccccCCh-----h-hc-CCcEEEecCcccccCCCccceeE
Confidence            45788889999999999999999999999999999999987755322     1 12 499999999999999877  777


Q ss_pred             EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE-EEcC
Q 048438           83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE-VVFP  161 (239)
Q Consensus        83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~-~~~~  161 (239)
                      ++++++........          +....+..+.....|..++  +.+.+..++++..++++++.+.|++.|.++ |..|
T Consensus       291 v~~~~~~l~~~~~~----------~~~~~g~~l~p~~A~l~lr--~L~tL~~R~~r~~~nA~~la~~L~~~p~V~~V~yP  358 (464)
T PLN02509        291 LAVKGEKLAKEVYF----------LQNSEGSGLAPFDCWLCLR--GIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYA  358 (464)
T ss_pred             EEeccHHHHHHHHH----------HHHhcCCCcCHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHhcCCCccEEECC
Confidence            77655432111100          0001122234455665555  456778899999999999999999999885 4433


Q ss_pred             -----C-----------CeeEEEEEE
Q 048438          162 -----C-----------HFAVVCFRV  171 (239)
Q Consensus       162 -----~-----------~~~iv~f~~  171 (239)
                           |           ..++++|.+
T Consensus       359 gL~~~p~~~l~~~~~~g~gg~~sf~~  384 (464)
T PLN02509        359 GLPDHPGHHLHFSQAKGAGSVFSFIT  384 (464)
T ss_pred             CCCCCccHHHHHHhCCCCceEEEEEe
Confidence                 1           146999988

>PRK08861 cystathionine gamma-synthase; Provisional

Probab=99.46  E-value=1.5e-12  Score=113.13  Aligned_cols=151  Identities=19%  Similarity=0.277  Sum_probs=109.0

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ce
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CC   81 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g   81 (239)
                      .+-+|++...+|.+|.+.|+++|+++|+++|++++||.+|+.+...-+     +. + ++|+++.|+|||+++|.+  .|
T Consensus       138 ~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~vIvDea~~~~~~~~p-----l~-~-GaDivv~S~tK~l~G~~d~~gG  210 (388)
T PRK08861        138 KPKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLTPVLQKP-----LE-L-GADFVIHSTTKYINGHSDVIGG  210 (388)
T ss_pred             CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCccccccCCC-----cc-c-CCCEEEeecceeccCCCcceeE
Confidence            356788888899999999999999999999999999999987654322     21 2 499999999999999876  46


Q ss_pred             EEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE-EEc
Q 048438           82 CLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE-VVF  160 (239)
Q Consensus        82 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~-~~~  160 (239)
                      ++..+++++......          +....|....+...|..++  |.+.+.-|++++.+.|..+.+.|++.|.++ |..
T Consensus       211 ~i~~~~~~~~~~~~~----------~~~~~G~~~~p~~a~l~~r--gl~Tl~lR~~~~~~~a~~~a~~L~~~p~v~~V~y  278 (388)
T PRK08861        211 VLITKTKEHAEELAW----------WGNCIGATGTPFDSYMTLR--GIRTLGARMRVHEESAQQILAYLQTQSLVGTIYH  278 (388)
T ss_pred             EEEecHHHHHHHHHH----------HHhccCCCCChHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHhCCCeeEEEC
Confidence            555544333222110          1111233334556676655  567788899999999999999999999875 433


Q ss_pred             C-----C-----------CeeEEEEEEcC
Q 048438          161 P-----C-----------HFAVVCFRVSP  173 (239)
Q Consensus       161 ~-----~-----------~~~iv~f~~~~  173 (239)
                      |     |           ..++++|.+++
T Consensus       279 P~l~~~p~~~~~~~~~~g~gg~~sf~~~~  307 (388)
T PRK08861        279 PSLPEHPGHEIAKKQQSGFGSMLSFEFAG  307 (388)
T ss_pred             CCCCCCchHHHHHHhCCCCCceEEEEeCC
Confidence            3     1           13699999974

>PRK07582 cystathionine gamma-lyase; Validated

Probab=99.46  E-value=1.9e-12  Score=111.92  Aligned_cols=149  Identities=19%  Similarity=0.222  Sum_probs=101.6

Q ss_pred             EEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc--eEE
Q 048438            6 LFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC--CCL   83 (239)
Q Consensus         6 ~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~--g~l   83 (239)
                      -+|++..-+|.+|.+.|+++|+++||++|++++||++|+.+....+     ++ + ++|+++.++|||+++|.|+  |++
T Consensus       134 ~lV~le~p~NPtg~v~di~~I~~~a~~~g~~lvVD~t~~~~~~~~p-----~~-~-g~Divv~S~sK~l~G~~g~~~G~v  206 (366)
T PRK07582        134 DLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDNTTATPLGQRP-----LE-L-GADLVVASDTKALTGHSDLLLGYV  206 (366)
T ss_pred             eEEEEECCCCCCCCccCHHHHHHHHHHcCCEEEEECCCCCccccCc-----hh-c-CCcEEEecccccccCCCCeeEEEE
Confidence            3556667778899999999999999999999999999863211111     11 2 4899999999999998874  666


Q ss_pred             EeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc-C-
Q 048438           84 WATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF-P-  161 (239)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~-~-  161 (239)
                      +.+++........          +....+-....+..|..++.  .+.+..++++..+++..+.+.|++.|.++-+. | 
T Consensus       207 ~~~~~~l~~~l~~----------~~~~~g~~~~~~~a~l~~r~--l~tl~~R~~~~~~na~~la~~L~~~p~v~~v~yp~  274 (366)
T PRK07582        207 AGRDPELMAAVER----------WRLLAGAIPGPFEAWLAHRS--LGTLGLRFARQCANALAVAELLAGHPAVRGVRYPG  274 (366)
T ss_pred             EcCcHHHHHHHHH----------HHHHhCCCCCHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHHHhCCCccEEECCC
Confidence            6544433222210          00011112234555655553  44667888899999999999999998876443 1 


Q ss_pred             ----C-----------CeeEEEEEEcC
Q 048438          162 ----C-----------HFAVVCFRVSP  173 (239)
Q Consensus       162 ----~-----------~~~iv~f~~~~  173 (239)
                          |           ..++++|.+++
T Consensus       275 l~~~p~~~~~~~~~~~~gg~~s~~~~~  301 (366)
T PRK07582        275 LPGDPAHEVAARQMRRFGGLVSFELAD  301 (366)
T ss_pred             CCCCccHHHHHhhCCCCcceEEEEeCC
Confidence                2           35799999963

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=99.45  E-value=3.6e-12  Score=110.63  Aligned_cols=197  Identities=13%  Similarity=0.057  Sum_probs=117.5

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCccc-ccccCCC--CCcceEEEcCcccCCCcccce
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEF-RHFIDGV--EGADSFSLNAHKWFFATLDCC   81 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~-~~~~~~~--~~~Ds~~~~~hK~l~~P~g~g   81 (239)
                      +.+++.....|.+|.+.|+++|+++|++||+++++|++|+.+.+..... ......+  ..-+++..++||+++ +.| |
T Consensus       169 ~~lvi~~~~~~~~G~~~~l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G-g  246 (385)
T PRK05958        169 RALIVTESVFSMDGDLAPLAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKALG-SSG-A  246 (385)
T ss_pred             CeEEEEEecccCCCCcCCHHHHHHHHHHhCCEEEEECcccccccCCCCCchHHhhCCCCCCceEEEEechhhcc-cCC-c
Confidence            4566666677889999999999999999999999999997664421100 0000111  123477899999985 444 5


Q ss_pred             EEEeeCcccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc
Q 048438           82 CLWATNPEYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF  160 (239)
Q Consensus        82 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~  160 (239)
                      +++. ++++........      ..+....+.. ........+++.+...  .+..++..++.+++.+.|++. +++++ 
T Consensus       247 ~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~~aa~~aal~~~~~~--~~~~~~~~~~~~~l~~~L~~~-~~~~~-  315 (385)
T PRK05958        247 AVLG-SETLIDYLINRA------RPFIFTTALPPAQAAAARAALRILRRE--PERRERLAALIARLRAGLRAL-GFQLM-  315 (385)
T ss_pred             EEEc-CHHHHHHHHHhC------ccceecCCCCHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHc-CCCcC-
Confidence            5543 333332211000      0111111111 2223334455543221  456677888999999999886 67754 


Q ss_pred             CCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEE---ECCEeEEEEEecCCCCCc
Q 048438          161 PCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVV---LGGIYAIRFATGATLTEE  237 (239)
Q Consensus       161 ~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~---~~g~~~lR~~~~~~~t~~  237 (239)
                      ++..+++.|.++..                       ....++.++|.++|........   ..|..++|++++..+|.+
T Consensus       316 ~~~~~~~~~~~~~~-----------------------~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~lRis~~~~~~~~  372 (385)
T PRK05958        316 DSQSAIQPLIVGDN-----------------------ERALALAAALQEQGFWVGAIRPPTVPAGTSRLRITLTAAHTEA  372 (385)
T ss_pred             CCCCCEEEEEeCCH-----------------------HHHHHHHHHHHHCCceEecccCCCCCCCCceEEEEecCCCCHH
Confidence            45677888887531                       1233677778777655432111   124578999988766654

>PRK09028 cystathionine beta-lyase; Provisional

Probab=99.44  E-value=1.8e-12  Score=112.69  Aligned_cols=150  Identities=16%  Similarity=0.181  Sum_probs=107.8

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ce
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CC   81 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g   81 (239)
                      .+-+|++++.+|.+|.+.|+++|+++||++|++++||.+|+.+...-+     + .+ +||+++.++|||++++.+  .|
T Consensus       146 ~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t~a~p~~~~P-----l-~~-GaDivv~S~tK~l~Gh~d~~~G  218 (394)
T PRK09028        146 NTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWASPINSRP-----F-EM-GVDISIQAATKYIVGHSDVMLG  218 (394)
T ss_pred             CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCccccccCCc-----c-cc-CceEEEEeCCeEecCCCCEEEE
Confidence            356888899999999999999999999999999999999987643222     1 12 499999999999999943  23


Q ss_pred             EEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE-EEc
Q 048438           82 CLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE-VVF  160 (239)
Q Consensus        82 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~-~~~  160 (239)
                      ++ +.++.+......          +....|.-..+...|..++  |.+.+.-|++++.+.+..+.+.|++.|.++ |..
T Consensus       219 ~~-~~~~~~~~~l~~----------~~~~~G~~~~p~~a~l~~r--gl~TL~lR~~~~~~na~~la~~L~~~p~v~~V~y  285 (394)
T PRK09028        219 TA-TANEKHWDQLRE----------HSYLMGQCTSPDDVYLAMR--GLRTLGVRLAQHEKNALKVANWLATRPEVDHVRH  285 (394)
T ss_pred             EE-ECCHHHHHHHHH----------HHHhcCCCCCHHHHHHHHc--ccCcHHHHHHHHHHHHHHHHHHHhcCCCccEEEC
Confidence            33 334333221110          0111233345566776665  566788899999999999999999998875 433


Q ss_pred             C-----C-----------CeeEEEEEEcC
Q 048438          161 P-----C-----------HFAVVCFRVSP  173 (239)
Q Consensus       161 ~-----~-----------~~~iv~f~~~~  173 (239)
                      |     |           ..++++|.+++
T Consensus       286 Pgl~s~p~~~~~~~~~~g~gg~~sf~l~~  314 (394)
T PRK09028        286 PAFETCPGHEFFKRDFSGSNGLFSFVLKQ  314 (394)
T ss_pred             CCCCCCccHHHHHHhccCCCceEEEEECC
Confidence            3     1           14699999974

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=99.44  E-value=2.9e-12  Score=111.13  Aligned_cols=149  Identities=15%  Similarity=0.223  Sum_probs=107.0

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ceE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCC   82 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~   82 (239)
                      +-+|++.+.+|.+|.+.||++|+++||++|++++||++|+.+...-+     ++ + ++|+++.++|||++++.+  .|+
T Consensus       136 tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t~a~g~~~~p-----l~-~-gaDivv~S~tK~l~G~~d~~gG~  208 (377)
T TIGR01324       136 TKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAGLLFKP-----LE-H-GVDISIQAGTKYLVGHSDIMIGT  208 (377)
T ss_pred             ceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccccCc-----cc-c-CceEEEecCceeccCCCCceEEE
Confidence            56788889999999999999999999999999999999998766322     11 1 499999999999998865  455


Q ss_pred             EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE-EEcC
Q 048438           83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE-VVFP  161 (239)
Q Consensus        83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~-~~~~  161 (239)
                      ++. +++.+.....          ...-.|....+...|..++  |.+.+..+++++.+.+..+.+.|++.|.++ ++.|
T Consensus       209 v~~-~~~~~~~l~~----------~~~~~G~~l~p~~a~~~~r--gl~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~yp  275 (377)
T TIGR01324       209 VVA-NARTWDQLRE----------HSYLMGQMVDADDAYTTLR--GLRTLGVRLKQHQESSLAIAKWLSEQPEVARVLHP  275 (377)
T ss_pred             EEe-CHHHHHHHHH----------HHHHhCCCCCHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHhCCCcCEEECC
Confidence            554 3333222110          0011122334455666665  456777889999999999999999988874 4433


Q ss_pred             -----C-----------CeeEEEEEEcC
Q 048438          162 -----C-----------HFAVVCFRVSP  173 (239)
Q Consensus       162 -----~-----------~~~iv~f~~~~  173 (239)
                           |           ..++++|.+++
T Consensus       276 ~l~~~p~~~~~~~~~~~~g~~~s~~l~~  303 (377)
T TIGR01324       276 ALPSCPGHEFWKRDFSGSSGLFSFVLQR  303 (377)
T ss_pred             CCCCCccHHHHHHhccCCCceEEEEECC
Confidence                 1           14799999975

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=99.44  E-value=3.3e-12  Score=112.14  Aligned_cols=198  Identities=14%  Similarity=0.139  Sum_probs=120.9

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccc--cCC-CCCcceEEEcCcccCCCcccc
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--IDG-VEGADSFSLNAHKWFFATLDC   80 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~~~-~~~~Ds~~~~~hK~l~~P~g~   80 (239)
                      .+.+|++...++++|.+.|+++|.++|+++|++++||.||+.+.+ .+.....  ..+ .+.+|.++.+++|+++.+.  
T Consensus       178 ~t~~v~i~~~~n~tG~~~~l~~i~~l~~~~~~~livDea~~~g~~-g~~g~g~~~~~~~~~~~div~~tlsK~~g~~G--  254 (410)
T PRK13392        178 RPKLIAFESVYSMDGDIAPIEAICDLADRYNALTYVDEVHAVGLY-GARGGGIAERDGLMDRIDMIQGTLAKAFGCLG--  254 (410)
T ss_pred             CCEEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCccccCc-CCCCCchhhhccCCCCCcEEEEEChHhhhccc--
Confidence            456788888999999999999999999999999999999996644 1111111  111 1347888999999988763  


Q ss_pred             eEEEeeCcccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Q 048438           81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVV  159 (239)
Q Consensus        81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~  159 (239)
                      |++.. +++.........      ..+....+.. ........+++.+...  ....++..+..+++.+.|++. |+++.
T Consensus       255 G~~~~-~~~~~~~l~~~~------~~~~~s~~~~~~~~~a~~aaL~~~~~~--~~~~~~~~~~~~~l~~~L~~~-g~~~~  324 (410)
T PRK13392        255 GYIAA-SADLIDFVRSFA------PGFIFTTALPPAVAAGATAAIRHLKTS--QTERDAHQDRVAALKAKLNAN-GIPVM  324 (410)
T ss_pred             chhhc-CHHHHHHHHHhC------cchhccCcCCHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHc-CCCCC
Confidence            44433 443333211100      0011111111 1123333445543222  233456678889999999886 88765


Q ss_pred             cCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEE----EECCEeEEEEEecCCCC
Q 048438          160 FPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNV----VLGGIYAIRFATGATLT  235 (239)
Q Consensus       160 ~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~----~~~g~~~lR~~~~~~~t  235 (239)
                       +++.+++.+.++.                       +....++.++|.++..+++.+.    ...|..++|++++..+|
T Consensus       325 -~~~~~~~~i~~~~-----------------------~~~~~~~~~~L~~~~GI~v~~~~~p~~~~~~~~lRis~~~~~t  380 (410)
T PRK13392        325 -PSPSHIVPVMVGD-----------------------PTLCKAISDRLMSEHGIYIQPINYPTVPRGTERLRITPTPLHD  380 (410)
T ss_pred             -CCCCCEEEEEeCC-----------------------HHHHHHHHHHHHHhCCEEEeeeCCCCCCCCCceEEEEECCCCC
Confidence             5677887666542                       1123467777764433444332    22355789999998888


Q ss_pred             CcC
Q 048438          236 EER  238 (239)
Q Consensus       236 ~~~  238 (239)
                      .+|
T Consensus       381 ~ed  383 (410)
T PRK13392        381 DED  383 (410)
T ss_pred             HHH
Confidence            764

>PRK08114 cystathionine beta-lyase; Provisional

Probab=99.44  E-value=2.4e-12  Score=111.69  Aligned_cols=149  Identities=12%  Similarity=0.127  Sum_probs=110.5

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhC--CEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcc--cc
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFG--IWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATL--DC   80 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~g--i~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~--g~   80 (239)
                      +-+|.+.+.+|.+|.+.||++|+++||++|  +.++||++|+.+.+ ++     ...+ +||+++.|.|||+++|.  ++
T Consensus       148 TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~-~~-----pl~~-GaDivv~S~tKyl~Ghsdv~~  220 (395)
T PRK08114        148 TKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGVL-FK-----ALDF-GIDISIQAGTKYLVGHSDAMI  220 (395)
T ss_pred             ceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCccccc-cC-----HHHc-CCcEEEEcCcccccCCCccee
Confidence            468889999999999999999999999985  99999999998766 43     1222 49999999999999995  67


Q ss_pred             eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE-EE
Q 048438           81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE-VV  159 (239)
Q Consensus        81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~-~~  159 (239)
                      |+++. ++........          +....|.-..+...|..++  |.+.+.-|++++.+.|..+.+.|++.|.++ |.
T Consensus       221 G~v~~-~~~~~~~l~~----------~~~~~G~~~~p~~a~l~~r--gl~TL~lR~~~~~~na~~va~~L~~hp~V~~V~  287 (395)
T PRK08114        221 GTAVA-NARCWEQLRE----------NSYLMGQMVDADTAYMTSR--GLRTLGVRLRQHEESSLKVAEWLAEHPEVARVN  287 (395)
T ss_pred             EEEEc-CHHHHHHHHH----------HHHhccCCCCHHHHHHHHc--CCCcHHHHHHHHHHHHHHHHHHHHcCCCEeEEE
Confidence            76654 3332221110          0111233445566776655  567778899999999999999999999886 44


Q ss_pred             cC-----C-----------CeeEEEEEEcC
Q 048438          160 FP-----C-----------HFAVVCFRVSP  173 (239)
Q Consensus       160 ~~-----~-----------~~~iv~f~~~~  173 (239)
                      .|     |           ..++++|.+++
T Consensus       288 yPgl~~~p~~~~~~~~~~g~gg~~sf~l~~  317 (395)
T PRK08114        288 HPALPGCKGHEFWKRDFTGSSGLFSFVLKK  317 (395)
T ss_pred             CCCCCCCccHHHHHhhCCCCceEEEEEecC
Confidence            33     1           14699999975

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=99.43  E-value=2.3e-12  Score=111.60  Aligned_cols=150  Identities=17%  Similarity=0.280  Sum_probs=104.8

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ceE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCC   82 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~   82 (239)
                      +-+|++...+|.+|.+.|+++|+++||++|++++||++|+.+....+     +. . ++|+++.+++|+++++..  .|+
T Consensus       126 ~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~t~~~~~~~~~-----~~-~-g~Divv~S~tK~l~g~~~~~gG~  198 (369)
T cd00614         126 TKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFATPYLQRP-----LE-L-GADIVVHSATKYIGGHSDVIAGV  198 (369)
T ss_pred             CeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcchhcCCh-----hh-h-CCcEEEeccceeccCCCCceEEE
Confidence            55777888889999999999999999999999999999987654211     11 1 499999999999987643  566


Q ss_pred             EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc-C
Q 048438           83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF-P  161 (239)
Q Consensus        83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~-~  161 (239)
                      ++.++++.......          +....+........|..++.+  +.+..++++..++++++.+.|++.++++-+. |
T Consensus       199 v~~~~~~l~~~l~~----------~~~~~g~~~~p~~a~~~l~~l--~tl~~r~~~~~~na~~la~~L~~~~~v~~V~~p  266 (369)
T cd00614         199 VVGSGEALIQRLRF----------LRLALGTILSPFDAWLLLRGL--KTLPLRMERHSENALKVAEFLEKHPKVERVYYP  266 (369)
T ss_pred             EEeCcHHHHHHHHH----------HHHhhCCCCCHHHHHHHHcCC--CCHHHHHHHHHHHHHHHHHHHHcCCCccEEECC
Confidence            66544233322211          000012223345555555543  5567788899999999999999988775433 2


Q ss_pred             ----------------CCeeEEEEEEcC
Q 048438          162 ----------------CHFAVVCFRVSP  173 (239)
Q Consensus       162 ----------------~~~~iv~f~~~~  173 (239)
                                      ...+|++|.+++
T Consensus       267 ~l~~~~~~~~~~~~~~g~g~i~s~~l~~  294 (369)
T cd00614         267 GLPSHPQHELAKKQMSGYGGVFSFELKG  294 (369)
T ss_pred             CCCCCchHHHHHHhcCCCceEEEEEeCC
Confidence                            136899999974

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>PLN02822 serine palmitoyltransferase

Probab=99.43  E-value=9.4e-12  Score=111.19  Aligned_cols=206  Identities=10%  Similarity=0.022  Sum_probs=125.7

Q ss_pred             EEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccc--cCCC--CCcceEEEcCcccCCCcccce
Q 048438            6 LFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--IDGV--EGADSFSLNAHKWFFATLDCC   81 (239)
Q Consensus         6 ~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~~~~--~~~Ds~~~~~hK~l~~P~g~g   81 (239)
                      .+|++..-.+++|.+.|+++|.++|++||+++++|.+|+.+.+ ....+..  ..++  ..+|.++.++.|.++++ | |
T Consensus       247 ~~Ivve~i~~~~G~i~~L~~i~~l~~k~~~~LIvDEa~s~gvl-G~~G~G~~e~~~v~~~~~dii~~s~sKalg~~-G-G  323 (481)
T PLN02822        247 RYIVVEAIYQNSGQIAPLDEIVRLKEKYRFRVLLDESNSFGVL-GKSGRGLSEHFGVPIEKIDIITAAMGHALATE-G-G  323 (481)
T ss_pred             EEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCcccccc-CCCCCChHHHcCCCCCCCeEEEecchhhhhhC-C-e
Confidence            5677767778899999999999999999999999999986654 2111111  1122  24899999999998643 3 5


Q ss_pred             EEEeeCcccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc
Q 048438           82 CLWATNPEYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF  160 (239)
Q Consensus        82 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~  160 (239)
                      +++ .+++.+......      ...+.+..+.+ ..+.+...+++.+.  ...+..++.+++.+++.+.|++.+|+++..
T Consensus       324 ~i~-g~~~ii~~~~~~------~~~~~fsa~lPp~~~~Aa~~aL~~l~--~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~  394 (481)
T PLN02822        324 FCT-GSARVVDHQRLS------SSGYVFSASLPPYLASAAITAIDVLE--DNPSVLAKLKENIALLHKGLSDIPGLSIGS  394 (481)
T ss_pred             EEE-cCHHHHHHHHhc------CCceeeccccCHHHHHHHHHHHHHHH--hCHHHHHHHHHHHHHHHHHHHhcCCcccCC
Confidence            554 344444332210      01122222212 11122223444332  224567788899999999999887888877


Q ss_pred             CCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEE------CCEeEEEEEecCCC
Q 048438          161 PCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVL------GGIYAIRFATGATL  234 (239)
Q Consensus       161 ~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~------~g~~~lR~~~~~~~  234 (239)
                      ++.++++.+.+++...               ..+......+.+.++|.++..+++++...      .+...+|++++..+
T Consensus       395 ~~~spi~~l~l~~~~~---------------~~~~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~~~~~~~~~lRi~is~~~  459 (481)
T PLN02822        395 NTLSPIVFLHLEKSTG---------------SAKEDLSLLEHIADRMLKEDSVLVVVSKRSTLDKCRLPVGIRLFVSAGH  459 (481)
T ss_pred             CCCCCEEEEEeCCCcc---------------cccchHHHHHHHHHHHHhcCCEEEEeeCCCCcCCCCCCCcEEEEECCCC
Confidence            7788899999864210               00001233457778887443344443211      12347999988877


Q ss_pred             CCcC
Q 048438          235 TEER  238 (239)
Q Consensus       235 t~~~  238 (239)
                      |++|
T Consensus       460 t~ed  463 (481)
T PLN02822        460 TESD  463 (481)
T ss_pred             CHHH
Confidence            7653

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=99.43  E-value=7.1e-12  Score=107.68  Aligned_cols=198  Identities=12%  Similarity=0.037  Sum_probs=120.0

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccc-cccCCC--CCcceEEEcCcccCCCcccce
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFR-HFIDGV--EGADSFSLNAHKWFFATLDCC   81 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~-~~~~~~--~~~Ds~~~~~hK~l~~P~g~g   81 (239)
                      +.+|+.....+.+|.+.|+++|.++|+++|+++++|.+|+.+........ ....++  ...|++..++||+++. .| |
T Consensus       147 ~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~-~g-G  224 (360)
T TIGR00858       147 RKLIVTDGVFSMDGDIAPLPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALGS-YG-A  224 (360)
T ss_pred             CeEEEEeCCccCCCCCcCHHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEechhhhhc-cC-c
Confidence            56676677778999999999999999999999999999986544221000 001111  2478999999999765 44 6


Q ss_pred             EEEeeCcccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc
Q 048438           82 CLWATNPEYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF  160 (239)
Q Consensus        82 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~  160 (239)
                      +++. +++.........      ..+....+.. ....+...+++.+.  ..++..++..++.+++.+.|++. ++++. 
T Consensus       225 ~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~l~~~L~~~-~~~~~-  293 (360)
T TIGR00858       225 YVAG-SQALIDYLINRA------RTLIFSTALPPAVAAAALAALELIQ--EEPWRREKLLALIARLRAGLEAL-GFTLM-  293 (360)
T ss_pred             EEEc-CHHHHHHHHHhC------ccceecCCCCHHHHHHHHHHHHHHh--hCHHHHHHHHHHHHHHHHHHHHc-CCccC-
Confidence            5554 333332211000      0011111111 11223334444332  22456677889999999999886 67755 


Q ss_pred             CCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEE---ECCEeEEEEEecCCCCCc
Q 048438          161 PCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVV---LGGIYAIRFATGATLTEE  237 (239)
Q Consensus       161 ~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~---~~g~~~lR~~~~~~~t~~  237 (239)
                      ++..+++.+.++..                       ....++.++|.++|........   ..+..++|++++.++|.+
T Consensus       294 ~~~~~~~~~~~~~~-----------------------~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~iRis~~~~~~~~  350 (360)
T TIGR00858       294 PSCTPIVPVIIGDN-----------------------ASALALAEELQQQGIFVGAIRPPTVPAGTSRLRLTLSAAHTPG  350 (360)
T ss_pred             CCCCCEEEEEeCCH-----------------------HHHHHHHHHHHHCCeeEeeeCCCCCCCCCceEEEEEcCCCCHH
Confidence            55677887776431                       1123567777777665443211   134568999999877765


Q ss_pred             C
Q 048438          238 R  238 (239)
Q Consensus       238 ~  238 (239)
                      |
T Consensus       351 ~  351 (360)
T TIGR00858       351 D  351 (360)
T ss_pred             H
Confidence            3

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>PRK06767 methionine gamma-lyase; Provisional

Probab=99.43  E-value=2.7e-12  Score=111.81  Aligned_cols=150  Identities=17%  Similarity=0.239  Sum_probs=104.3

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ceE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCC   82 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~   82 (239)
                      +-+|++...+|.+|.+.|+++|.++||++|++++||+||+.+....+     +.  .++|+++.+++|+++++..  .|+
T Consensus       147 tklV~lesp~NptG~v~dl~~I~~la~~~g~~vivD~a~a~~~~~~p-----l~--~g~Div~~S~sK~l~g~g~~~gG~  219 (386)
T PRK06767        147 TKLIFVETPINPTMKLIDLKQVIRVAKRNGLLVIVDNTFCSPYLQRP-----LE--LGCDAVVHSATKYIGGHGDVVAGV  219 (386)
T ss_pred             ceEEEEeCCCCCCceecCHHHHHHHHHHcCCEEEEECCCcccccCCc-----hh--cCCcEEEecCcceecCCCCceeEE
Confidence            45777788889999999999999999999999999999976544322     11  1489999999999988765  466


Q ss_pred             EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcCC
Q 048438           83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPC  162 (239)
Q Consensus        83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~~  162 (239)
                      ++.+ ++.+......         +....+.....+..|..++.  .+.+..++++..++++++.+.|+++|+++.+..|
T Consensus       220 v~~~-~~~i~~~~~~---------~~~~~g~~~~~~~a~l~~~~--L~tl~~r~~~~~~~a~~la~~L~~~p~v~~v~~p  287 (386)
T PRK06767        220 TICK-TRALAEKIRP---------MRKDIGGIMAPFDAWLLLRG--LKTLAVRMDRHCDNAEKIVSFLKNHDAVEGVWYP  287 (386)
T ss_pred             EEeC-hHHHHHHHHH---------HHHHhCCCCCHHHHHHHHcC--CCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECC
Confidence            6654 3333221100         00001111233444555443  3455678888999999999999999999865422


Q ss_pred             -----------CeeEEEEEEcC
Q 048438          163 -----------HFAVVCFRVSP  173 (239)
Q Consensus       163 -----------~~~iv~f~~~~  173 (239)
                                 ..+||+|.+++
T Consensus       288 ~~~~~~~~~~~~gg~vsf~l~~  309 (386)
T PRK06767        288 EGELASRQMKRGGGVISFSIKG  309 (386)
T ss_pred             CcHHHHHhCCCCCceEEEEEcC
Confidence                       24799999974

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=99.42  E-value=7.8e-12  Score=109.65  Aligned_cols=198  Identities=13%  Similarity=0.082  Sum_probs=120.4

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccc--cCCC-CCcceEEEcCcccCCCcccc
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--IDGV-EGADSFSLNAHKWFFATLDC   80 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~~~~-~~~Ds~~~~~hK~l~~P~g~   80 (239)
                      .+.+|+.....+++|.+.|+++|.++|+++|++++||+||+.|.+ .+.....  ..++ +.+|.++.++.|.++.+.  
T Consensus       177 ~~~~v~~~~v~~~~G~~~~l~~i~~l~~~~~~~livDea~~~g~~-g~~G~g~~~~~~~~~~~~i~~~tlsKa~g~~G--  253 (406)
T PRK13393        177 RPKLVAFESVYSMDGDIAPIAEICDVAEKHGAMTYLDEVHAVGLY-GPRGGGIAEREGLADRLTIIEGTLAKAFGVMG--  253 (406)
T ss_pred             CCEEEEEcCCCCCCCchhCHHHHHHHHHHcCCEEEEECCcccccc-CCCCCchhhhcCCCCCCeEEEEeCchhhcccC--
Confidence            456788888899999999999999999999999999999986643 1211111  1121 236888889999987653  


Q ss_pred             eEEEeeCcccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Q 048438           81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVV  159 (239)
Q Consensus        81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~  159 (239)
                      |++. .+++.........      ..+....+.. ..+.....+++.+....  ...++..++.+++.+.|++. |++++
T Consensus       254 G~~~-~~~~~~~~l~~~~------~~~~~t~~~~p~~~aa~~aaL~~~~~~~--~~~~~~~~~~~~l~~~L~~~-g~~~~  323 (406)
T PRK13393        254 GYIT-GSAALCDFIRSFA------SGFIFTTSLPPAVAAGALASVRHLKASS--AERERHQDRVARLRARLDKA-GIPHL  323 (406)
T ss_pred             ceee-CCHHHHHHHHHhC------cCceecCccCHHHHHHHHHHHHHHhhCH--HHHHHHHHHHHHHHHHHHHc-CCCcC
Confidence            4443 3333322211100      0111111222 12233445555443222  22245678889999999875 77655


Q ss_pred             cCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEE----EEECCEeEEEEEecCCCC
Q 048438          160 FPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTN----VVLGGIYAIRFATGATLT  235 (239)
Q Consensus       160 ~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~----~~~~g~~~lR~~~~~~~t  235 (239)
                       ++..+++.+.+.+                       ......+.++|.++..+++..    +...|...+|++++..+|
T Consensus       324 -~~~~~i~~v~~~~-----------------------~~~~~~l~~~L~~~~Gi~v~~~~~p~~p~g~~~iRis~~~~~t  379 (406)
T PRK13393        324 -PNPSHIVPVMVGD-----------------------PVLCKQISDELLDRYGIYVQPINYPTVPRGTERLRITPSPLHT  379 (406)
T ss_pred             -CCCCCeEEEEeCC-----------------------HHHHHHHHHHHHHhCCEEEEeECCCCCCCCCceEEEEECCCCC
Confidence             4567788776532                       112346777777653344433    223466789999999888


Q ss_pred             CcC
Q 048438          236 EER  238 (239)
Q Consensus       236 ~~~  238 (239)
                      .+|
T Consensus       380 ~ed  382 (406)
T PRK13393        380 DAD  382 (406)
T ss_pred             HHH
Confidence            764

>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.42  E-value=1.2e-11  Score=108.89  Aligned_cols=160  Identities=14%  Similarity=0.166  Sum_probs=105.2

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc-ceEE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD-CCCL   83 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g-~g~l   83 (239)
                      +-+|++.+.++.+|.+.|+++|+++||++|++++||++|+.+....+     + .+ ++|++++|+|||+++|.. .|.+
T Consensus       150 TklV~~e~~~np~g~v~Di~~I~~la~~~gi~livD~t~a~~~~~~p-----l-~~-GaD~vv~S~tK~l~g~g~~~gG~  222 (433)
T PRK08134        150 TRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDSTFTTPYLLRP-----F-EH-GADLVYHSATKFLGGHGTAIGGV  222 (433)
T ss_pred             CeEEEEECCCcccCcccCHHHHHHHHHHcCCEEEEECCCcccccCCc-----h-hc-CCCEEEeccccccCCCCCceEEE
Confidence            45778888899999999999999999999999999999998876443     2 22 499999999999876643 4555


Q ss_pred             EeeCccccc--c-----ccc---CCCCc-cC--CC--Cc--------eecCCCCCChHHHHHHHHHhCHHHHHHHHHHHH
Q 048438           84 WATNPEYLK--N-----KAT---ESKPV-VD--YK--DW--------QITLSRSFRSLKLWFVIRNYGMENLRHFLRSHV  140 (239)
Q Consensus        84 ~~~~~~~l~--~-----~~~---~~~~~-~~--~~--~~--------~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~  140 (239)
                      ++....+..  .     ...   ...+. .+  ..  .+        ....+........|..++  |.+.+..++++..
T Consensus       223 v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~ls~~~A~l~~~--gL~tl~~R~~~~~  300 (433)
T PRK08134        223 LVDGGRFDWEASGKFPELTEPYAGFHGMVFAEESTVAAFLLRARREGLRDFGACLSPMNAWQLLQ--GIETLPLRMERHV  300 (433)
T ss_pred             EEecCccccccccccccccCCcccccccchhhccchhHHHHHHHHHHHHhcCCCCCHHHHHHHhc--CCCcHHHHHHHHH
Confidence            553222111  0     000   00000 00  00  00        001122234455555444  5667889999999


Q ss_pred             HHHHHHHHHHhCCCCeEEEc-C-----C------------CeeEEEEEEcC
Q 048438          141 NMARLFERLVSGDKRFEVVF-P-----C------------HFAVVCFRVSP  173 (239)
Q Consensus       141 ~la~~l~~~l~~~~g~~~~~-~-----~------------~~~iv~f~~~~  173 (239)
                      +.+.++.+.|++.|.++-+. |     +            ..++++|.+++
T Consensus       301 ~nA~~la~~L~~~p~V~~V~yP~l~~~p~~~~~~~~~~~g~gg~~s~~l~~  351 (433)
T PRK08134        301 ANTRKVVAFLASHPAVARVAHPELESHPDHALAKRLLPRGAGSVFSFDLKG  351 (433)
T ss_pred             HHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEEecC
Confidence            99999999999998875332 2     1            14689999874

>PRK07269 cystathionine gamma-synthase; Reviewed

Probab=99.42  E-value=4.3e-12  Score=109.60  Aligned_cols=150  Identities=15%  Similarity=0.191  Sum_probs=110.2

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ceE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCC   82 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~   82 (239)
                      +-+|++...+|.+|.+.|+++|+++||++|++++||.+++.+...-+     + +. ++|++++|+||+++++..  .|+
T Consensus       137 TklV~lesP~NPtg~~~di~~I~~la~~~gi~vvvD~t~~~~~~~~p-----l-~~-gaDivv~S~tK~l~g~~d~~gG~  209 (364)
T PRK07269        137 TDIVYIETPTNPLMVEFDIEKVAKLAHAKGAKVIVDNTFYSPIYQRP-----I-EL-GADIVLHSATKYLSGHNDVLAGV  209 (364)
T ss_pred             ceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCCc-----h-hh-CCcEEEecCceeccCCCcccceE
Confidence            45788888999999999999999999999999999999876543211     2 11 499999999999998876  566


Q ss_pred             EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE-EEcC
Q 048438           83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE-VVFP  161 (239)
Q Consensus        83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~-~~~~  161 (239)
                      +..++++.......          +....|.....+..|..++  +.+.+..++++..++++++.+.|++.|++. ++.|
T Consensus       210 v~~~~~~l~~~~~~----------~~~~~G~~~s~~~a~l~~~--~L~tL~~r~~~~~~na~~~a~~L~~~p~v~~v~yp  277 (364)
T PRK07269        210 VVTNDLELYEKLFY----------NLNTTGAVLSPFDSYLLMR--GLKTLSLRMERSTANAQEVVAFLKKSPAVKEVLYT  277 (364)
T ss_pred             EEeCcHHHHHHHHH----------HHHHhCCCCCHHHHHHHHc--CCCcHHHHHHHHHHHHHHHHHHHHhCCCccEEeCC
Confidence            66655443322210          0001122344566666655  445688899999999999999999988865 5557


Q ss_pred             CCeeEEEEEEcC
Q 048438          162 CHFAVVCFRVSP  173 (239)
Q Consensus       162 ~~~~iv~f~~~~  173 (239)
                      +..++++|.+.+
T Consensus       278 g~gg~~sf~~~~  289 (364)
T PRK07269        278 GKGGMISFKVAD  289 (364)
T ss_pred             CcCcEEEEEECC
Confidence            788899999963

>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.41  E-value=8.2e-12  Score=110.03  Aligned_cols=160  Identities=15%  Similarity=0.193  Sum_probs=104.1

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcc-cceEE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATL-DCCCL   83 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~-g~g~l   83 (239)
                      +-+|+..+-++.+|.+.||++|+++||++|+.++||++|+.+...-+     . .+ ++|++++|+||+++++. +.|.+
T Consensus       156 tk~V~~e~~~Np~~~v~di~~I~~la~~~gi~livD~t~a~g~~~~p-----~-~~-GaDivv~S~~K~l~G~gd~~gG~  228 (437)
T PRK05613        156 TKAFFGETFANPQADVLDIPAVAEVAHRNQVPLIVDNTIATAALVRP-----L-EL-GADVVVASLTKFYTGNGSGLGGV  228 (437)
T ss_pred             CeEEEEECCCCCCCcccCHHHHHHHHHHcCCeEEEECCCccccccCh-----H-Hh-CCCEEEeeccceecCCCcceeEE
Confidence            34566677778899999999999999999999999999987755322     1 12 49999999999987653 34666


Q ss_pred             EeeCcccccc-------c---ccCCCC------ccCCCC----------ceecCCCCCChHHHHHHHHHhCHHHHHHHHH
Q 048438           84 WATNPEYLKN-------K---ATESKP------VVDYKD----------WQITLSRSFRSLKLWFVIRNYGMENLRHFLR  137 (239)
Q Consensus        84 ~~~~~~~l~~-------~---~~~~~~------~~~~~~----------~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~  137 (239)
                      ++.++.+...       .   ......      ..+...          +....|-...+...|..++  |.+.+.-|++
T Consensus       229 vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~r--gl~TL~lR~~  306 (437)
T PRK05613        229 LIDGGKFDWTVERDGKPVFPYFVTPDPAYHGLKYADLGAPAFGLKARAGLLRDTGATLSPFNAWVTAQ--GLDTLSLRLE  306 (437)
T ss_pred             EEecCcccccccccccccCCCCCCCccccccccccccchHHHHHHHHHHHHHhcCCCCCHHHHHHHHc--ccCcHHHHHH
Confidence            6643221100       0   000000      000000          0001122334455665554  6678889999


Q ss_pred             HHHHHHHHHHHHHhCCCCeE-EEcC-----C------------CeeEEEEEEcC
Q 048438          138 SHVNMARLFERLVSGDKRFE-VVFP-----C------------HFAVVCFRVSP  173 (239)
Q Consensus       138 ~~~~la~~l~~~l~~~~g~~-~~~~-----~------------~~~iv~f~~~~  173 (239)
                      ++.+.|.++.+.|++.|.++ |..|     |            ..++++|.+++
T Consensus       307 ~~~~nA~~lA~~L~~hp~V~~V~yPgl~~~p~~~~~~~~~~~g~gg~~sf~l~~  360 (437)
T PRK05613        307 RHNENAIKVAEFLNNHEKVAKVNFAGLKDSPWYATKEKLGLKYTGSVLSFDIKG  360 (437)
T ss_pred             HHHHHHHHHHHHHHcCCCcceEECCCCCCCccHHHHHHhcCCCCceEEEEEecC
Confidence            99999999999999999875 3332     1            13599999974

>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic

Probab=99.41  E-value=5.5e-12  Score=109.55  Aligned_cols=150  Identities=18%  Similarity=0.246  Sum_probs=104.4

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ce
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CC   81 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g   81 (239)
                      .+-+|++...+|.+|.+.|+++|+++||++|++++||++|+.+....+     + .+ ++|++++++|||+++|.+  .|
T Consensus       131 ~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~~~~~~~~-----l-~~-g~Di~v~S~tK~l~G~~~~~~G  203 (378)
T TIGR01329       131 KTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMSPLLCNP-----L-EL-GADIVYHSATKFLAGHSDVMAG  203 (378)
T ss_pred             CceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccccCCh-----h-hc-CCcEEEEecceeccCCccceeE
Confidence            356788888999999999999999999999999999999976644222     2 12 499999999999999987  88


Q ss_pred             EEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE-EEc
Q 048438           82 CLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE-VVF  160 (239)
Q Consensus        82 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~-~~~  160 (239)
                      +++++++........          .....|........|..++  +.+.+..++++..+++..+.+.|++.|.+. +..
T Consensus       204 ~v~~~~~~~~~~~~~----------~~~~~G~~~~~~~a~l~~~--~l~tl~~R~e~~~~na~~la~~L~~~~~v~~v~~  271 (378)
T TIGR01329       204 VLAVKGEEIAKKVYF----------LQNSTGSGLAPFDCWLLLR--GIKTLAIRIEKQQENARAIAMFLSTHPRVKKVRY  271 (378)
T ss_pred             EEEeCcHHHHHHHHH----------HHHhcCCcCCHHHHHHHHc--cCCCHHHHHHHHHHHHHHHHHHHHhCCCccEEEC
Confidence            888765433222110          0000122222333344333  446677888888899999999998887763 332


Q ss_pred             C-----C-----------CeeEEEEEEc
Q 048438          161 P-----C-----------HFAVVCFRVS  172 (239)
Q Consensus       161 ~-----~-----------~~~iv~f~~~  172 (239)
                      |     |           ..++++|.+.
T Consensus       272 p~l~~~p~~~l~~~~~~g~~~~~sf~~~  299 (378)
T TIGR01329       272 AGLPSHPGFHLHFSQAKGAGSVLSFETG  299 (378)
T ss_pred             CCCCCCccHHHHHHhCCCcceEEEEEEC
Confidence            2     1           2379999993

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK00011 glyA serine hydroxymethyltransferase; Reviewed

Probab=99.40  E-value=7.1e-12  Score=110.19  Aligned_cols=147  Identities=13%  Similarity=0.078  Sum_probs=93.3

Q ss_pred             CCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEEeeCccccccc
Q 048438           15 TAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWATNPEYLKNK   94 (239)
Q Consensus        15 t~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~l~~~   94 (239)
                      +.+|...|+++|+++|+++|+++++|+||+.+..........+.   .+|++++++|||+.+|.|. +++..++.+....
T Consensus       174 ~~~~~~~~~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~~---~~di~~~S~~K~l~g~~gg-~i~~~~~~~~~~l  249 (416)
T PRK00011        174 SAYSRPIDFKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVP---HADVVTTTTHKTLRGPRGG-LILTNDEELAKKI  249 (416)
T ss_pred             CcCCCccCHHHHHHHHHHcCCEEEEECcchhcccccCccCCCCC---CCcEEEecCCcCCCCCCce-EEEeCCHHHHHHH
Confidence            56788889999999999999999999999876543211111122   4899999999999888764 4444444443322


Q ss_pred             ccCCCCccCCCCceecCCCCC-ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc-CCCeeEEEEEEc
Q 048438           95 ATESKPVVDYKDWQITLSRSF-RSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF-PCHFAVVCFRVS  172 (239)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~-~~~~~iv~f~~~  172 (239)
                      ....      ..+. ..+... ...++..++..+..++++++.++..++++++++.|++. |+++.. ....+++.+.++
T Consensus       250 ~~~~------~~~~-~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~i~~~  321 (416)
T PRK00011        250 NSAV------FPGI-QGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEALAER-GFRVVSGGTDNHLVLVDLR  321 (416)
T ss_pred             HHHh------Cccc-cCCccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC-CCeeeecCCCCeEEEEeCc
Confidence            1100      0000 001111 11222333333334567788889999999999999986 888763 234578888875


Q ss_pred             C
Q 048438          173 P  173 (239)
Q Consensus       173 ~  173 (239)
                      +
T Consensus       322 ~  322 (416)
T PRK00011        322 S  322 (416)
T ss_pred             c
Confidence            4

>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT)

Probab=99.40  E-value=5.6e-12  Score=110.30  Aligned_cols=155  Identities=16%  Similarity=0.142  Sum_probs=94.2

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLW   84 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~   84 (239)
                      |-+|+.+.  +.+|...|+++|+++|+++|+++++|++|+.+..........+.   .+|+++.++|||+.+|.|.+++ 
T Consensus       162 ~~~v~~~~--~~~~~~~~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~---~~dv~~~s~sK~l~G~~gg~i~-  235 (402)
T cd00378         162 PKLIVAGA--SAYPRPIDFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLP---GADVVTTTTHKTLRGPRGGLIL-  235 (402)
T ss_pred             CCEEEecC--cccCCCcCHHHHHHHHHhcCCEEEEEccchhhhhhcccCCCccc---CCcEEEeccccCCCCCCceEEE-
Confidence            44444433  34578889999999999999999999998766542111111122   4899999999999888865444 


Q ss_pred             eeCcccccccccCCCCccCCCCceecCCCCC-ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc-CC
Q 048438           85 ATNPEYLKNKATESKPVVDYKDWQITLSRSF-RSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF-PC  162 (239)
Q Consensus        85 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~-~~  162 (239)
                      ..++++........      .... .++... ....+..++..+....++++.++..++++++.+.|++. |++++. +.
T Consensus       236 ~~~~~~~~~l~~~~------~~~~-~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~  307 (402)
T cd00378         236 TRKGELAKKINSAV------FPGL-QGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALAEALKER-GFKVVSGGT  307 (402)
T ss_pred             eccHHHHHHHHHHh------Cccc-cCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhC-CCeEeecCC
Confidence            44434433221100      0000 011111 11222223333322255677788889999999999986 888874 44


Q ss_pred             CeeEEEEEEcC
Q 048438          163 HFAVVCFRVSP  173 (239)
Q Consensus       163 ~~~iv~f~~~~  173 (239)
                      ..+.+.+.+++
T Consensus       308 ~~~~v~v~~~~  318 (402)
T cd00378         308 DNHLVLVDLRP  318 (402)
T ss_pred             CCeEEEEeCCc
Confidence            67788788764

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.

>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed

Probab=99.40  E-value=7.1e-12  Score=109.54  Aligned_cols=151  Identities=17%  Similarity=0.274  Sum_probs=105.7

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcc-cceEE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATL-DCCCL   83 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~-g~g~l   83 (239)
                      +-+|++...+|.+|.+.|+++|.++|+++|++++||++|+.+....+     . .+ ++|+++.|+||+++++. ..|.+
T Consensus       151 tklV~lesp~NptG~v~dl~~I~~la~~~gi~lvvD~a~a~~~~~~~-----~-~~-gaDivv~S~sK~l~g~g~~~GG~  223 (398)
T PRK07504        151 TKVFFLESPTNPTLEVIDIAAVAKIANQAGAKLVVDNVFATPLFQKP-----L-EL-GAHIVVYSATKHIDGQGRCLGGV  223 (398)
T ss_pred             ceEEEEECCCCCCcEecCHHHHHHHHHHcCCEEEEECCccccccCCc-----h-hh-CCCEEEeeccccccCCccceEEE
Confidence            46788889999999999999999999999999999999986644222     1 12 49999999999998764 23434


Q ss_pred             EeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE-EEcC-
Q 048438           84 WATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE-VVFP-  161 (239)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~-~~~~-  161 (239)
                      ++.+++.+.....         .+....+........|..++  +.+.+..++++..++++++.+.|++.|++. +..| 
T Consensus       224 vv~~~~~i~~~~~---------~~~~~~g~~~s~~~A~~~l~--~L~tl~~R~~~~~~na~~la~~L~~~p~v~~v~yp~  292 (398)
T PRK07504        224 VLSDKAWIEEHLQ---------DYFRHTGPSLSPFNAWTLLK--GLETLPVRVRQQTESAAAIADFLAGHPKVARVIYPG  292 (398)
T ss_pred             EEeCcHHHHHHHH---------HHHHHhCCCCCHHHHHHHHh--ccchHHHHHHHHHHHHHHHHHHHHcCCCccEEECCC
Confidence            4444343322110         00111223344555666655  456778899999999999999999998875 3333 


Q ss_pred             ----CC-----------eeEEEEEEcC
Q 048438          162 ----CH-----------FAVVCFRVSP  173 (239)
Q Consensus       162 ----~~-----------~~iv~f~~~~  173 (239)
                          |+           .++++|.+++
T Consensus       293 l~~~~~~~~~~~~~~g~g~~~s~~~~~  319 (398)
T PRK07504        293 RADHPQADIIAKQMTGGSTLVAFELKG  319 (398)
T ss_pred             CCCCccHHHHHHhCCCCccEEEEEeCC
Confidence                11           5699999974

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=99.40  E-value=1.6e-11  Score=107.08  Aligned_cols=198  Identities=15%  Similarity=0.088  Sum_probs=116.8

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCccc-ccccCCC-CCcceEEEcCcccCCCcccce
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEF-RHFIDGV-EGADSFSLNAHKWFFATLDCC   81 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~-~~~~~~~-~~~Ds~~~~~hK~l~~P~g~g   81 (239)
                      .+.+|+.....+.+|.+.|+++|.++|++||+++++|++|+.+.+..... .....++ +.+|+++.++||+++++. .|
T Consensus       174 ~~~~v~~~~v~~~~G~~~~~~~l~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~g~r-~G  252 (397)
T PRK06939        174 RHKLIATDGVFSMDGDIAPLPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGTLGKALGGAS-GG  252 (397)
T ss_pred             CCeEEEEecCcCCCCCcCCHHHHHHHHHHhCCEEEEECcccccCcCCCCCCHHHHcCCCCCCcEEEEECHHHhCccC-ce
Confidence            45667766677889999999999999999999999999997554321100 0001122 247999999999997664 47


Q ss_pred             EEEeeCcccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc
Q 048438           82 CLWATNPEYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF  160 (239)
Q Consensus        82 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~  160 (239)
                      +++.. ++++.......      ..+....+.. ..+..+..+++.+.  ..++..++..++.+++.+.|++. ++++. 
T Consensus       253 ~v~~~-~~~~~~l~~~~------~~~~~~~~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~l~~~L~~~-~~~~~-  321 (397)
T PRK06939        253 YTAGR-KEVIDWLRQRS------RPYLFSNSLAPAIVAASIKVLELLE--ESDELRDRLWENARYFREGMTAA-GFTLG-  321 (397)
T ss_pred             EEEeC-HHHHHHHHHhC------ccccccCCCCHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHc-CCCcC-
Confidence            76653 44443321100      0011111111 11222333444432  12455667778899999999876 66654 


Q ss_pred             CCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEE----CCEeEEEEEecCCCCC
Q 048438          161 PCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVL----GGIYAIRFATGATLTE  236 (239)
Q Consensus       161 ~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~----~g~~~lR~~~~~~~t~  236 (239)
                      ++..+++.+.+++.                       .....+.++|.++|.... ....    .+..++|++++..+++
T Consensus       322 ~~~~~~~~~~~~~~-----------------------~~~~~~~~~L~~~gI~v~-~~~~~~~~~~~~~iRi~~~~~~~~  377 (397)
T PRK06939        322 PGEHPIIPVMLGDA-----------------------KLAQEFADRLLEEGVYVI-GFSFPVVPKGQARIRTQMSAAHTK  377 (397)
T ss_pred             CCCCCEEEEEECCH-----------------------HHHHHHHHHHHHCCceEe-eeCCCCCCCCCceEEEEECCCCCH
Confidence            34455554444321                       112367777877875544 3221    2346899998777765


Q ss_pred             c
Q 048438          237 E  237 (239)
Q Consensus       237 ~  237 (239)
                      +
T Consensus       378 ~  378 (397)
T PRK06939        378 E  378 (397)
T ss_pred             H
Confidence            4

>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.39  E-value=3e-11  Score=106.49  Aligned_cols=160  Identities=17%  Similarity=0.201  Sum_probs=106.2

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc-ceEE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD-CCCL   83 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g-~g~l   83 (239)
                      +.+|++.+.+|.+|.+.|+++|+++||++|++++||++|+.+....+     ++ + ++|+++.|+||+++++.+ .|.+
T Consensus       156 tklV~ie~~sNp~G~v~Dl~~I~~la~~~gi~liVD~t~a~~~~~~p-----l~-~-GaDivv~S~tK~lgg~G~~i~G~  228 (436)
T PRK07812        156 TKAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVDNTIATPYLIRP-----LE-H-GADIVVHSATKYLGGHGTAIAGV  228 (436)
T ss_pred             CeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccCCc-----hh-c-CCCEEEEecccccCCCCCeEEEE
Confidence            45788889999999999999999999999999999999987655332     21 1 499999999999987632 4445


Q ss_pred             EeeCcccc--cccc----cCCCCccCC--CC-------------ceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHH
Q 048438           84 WATNPEYL--KNKA----TESKPVVDY--KD-------------WQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNM  142 (239)
Q Consensus        84 ~~~~~~~l--~~~~----~~~~~~~~~--~~-------------~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~l  142 (239)
                      ++.+..+-  ....    .....+...  ..             +....|........|..++  |.+.+..|+++..+.
T Consensus       229 vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~l~~r--gl~tL~~R~~~~~~n  306 (436)
T PRK07812        229 IVDGGTFDWTQGRFPGFTTPDPSYHGVVFAELGPPAYALKARVQLLRDLGSAISPFNAFLIAQ--GLETLSLRIERHVAN  306 (436)
T ss_pred             EEcCCccccccccccccccCCcccccchhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHhc--CcCcHHHHHHHHHHH
Confidence            55322111  0000    000000000  00             0001123344455565544  667889999999999


Q ss_pred             HHHHHHHHhCCCCeEEE-cC-----C------------CeeEEEEEEcC
Q 048438          143 ARLFERLVSGDKRFEVV-FP-----C------------HFAVVCFRVSP  173 (239)
Q Consensus       143 a~~l~~~l~~~~g~~~~-~~-----~------------~~~iv~f~~~~  173 (239)
                      |.++.+.|++.|+++-+ .|     |            ..++++|.+++
T Consensus       307 A~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~~g~gg~~sf~l~~  355 (436)
T PRK07812        307 AQRVAEFLEARDEVASVNYAGLPSSPWYERAKRLAPKGTGAVLSFELAG  355 (436)
T ss_pred             HHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCcCCCceEEEEEecC
Confidence            99999999999987533 33     1            13599999974

>PRK12462 phosphoserine aminotransferase; Provisional

Probab=99.38  E-value=5.2e-12  Score=108.11  Aligned_cols=192  Identities=14%  Similarity=0.058  Sum_probs=128.9

Q ss_pred             EEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEEe
Q 048438            6 LFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWA   85 (239)
Q Consensus         6 ~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~   85 (239)
                      -+|.+|+..|.+|+..|     ++.+.+++.++||++-+.+..+++     ++.   .|.+..+.+|+++ |.|.+++++
T Consensus       145 ~~v~~t~NETstGv~~~-----~~~~~~~~llvvD~sS~~~s~pid-----~~~---~dvi~agsQKnlg-P~Gltvviv  210 (364)
T PRK12462        145 PFRHYVSNETVEGLQFP-----DAAGLPDSPLIADMSSDFMSRPFD-----VEA---YGMVYAHAQKNLG-PAGVTVAII  210 (364)
T ss_pred             cEEEEccCCCCceEecC-----cccccCCCeEEEEcCchhhCCCCC-----hHH---ccEEEeeccccCC-CCceEEEEE
Confidence            56889999999999886     333446899999999888877776     443   6999999999998 999999998


Q ss_pred             eCcccccccccCCCCccCCCCceecCC---CC--CChHHHHHHHHHhCHH--HHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 048438           86 TNPEYLKNKATESKPVVDYKDWQITLS---RS--FRSLKLWFVIRNYGME--NLRHFLRSHVNMARLFERLVSGDKRFEV  158 (239)
Q Consensus        86 ~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~l~~~g~~--g~~~~~~~~~~la~~l~~~l~~~~g~~~  158 (239)
                      ++ +.+.......+.++++..+.-..+   ++  +....+-.+++.+-.+  |++++.+++.+.++.+++.|.+.++|-.
T Consensus       211 s~-~al~~~~~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~ly~~id~~~~~~~  289 (364)
T PRK12462        211 RR-ALLERVPDTLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLYATLDALNEVID  289 (364)
T ss_pred             CH-HHHhhccccCCchhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence            64 334332211112333211110111   11  1123333456666566  9999999999999999999999876654


Q ss_pred             Ec-CC---CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCC
Q 048438          159 VF-PC---HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATL  234 (239)
Q Consensus       159 ~~-~~---~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~  234 (239)
                      .. .+   ..-.|+|++.+                       .++...+.+...++|.+-+.+...  ..-+|+|+-|-.
T Consensus       290 ~~~~~~~RS~mnv~f~~~~-----------------------~~l~~~f~~~a~~~gl~~lkGhr~--vgg~Ras~yna~  344 (364)
T PRK12462        290 CHAHRAARSTMNVAFRFRQ-----------------------PRLDTLFKEQSTEAGFCGLSGHRS--IGGIRASLYNAV  344 (364)
T ss_pred             CCCChhhcCcceEEEEcCC-----------------------HHHHHHHHHHHHHCCCccccCCcc--cCceEEEcCCCC
Confidence            32 11   23457888765                       355667888888888876654333  233899987766


Q ss_pred             CCc
Q 048438          235 TEE  237 (239)
Q Consensus       235 t~~  237 (239)
                      +.+
T Consensus       345 ~~e  347 (364)
T PRK12462        345 SEQ  347 (364)
T ss_pred             CHH
Confidence            543

>PLN02483 serine palmitoyltransferase

Probab=99.38  E-value=2.3e-11  Score=108.95  Aligned_cols=198  Identities=14%  Similarity=0.010  Sum_probs=118.1

Q ss_pred             EEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccc--cCCC--CCcceEEEcCcccCCCcccce
Q 048438            6 LFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--IDGV--EGADSFSLNAHKWFFATLDCC   81 (239)
Q Consensus         6 ~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~~~~--~~~Ds~~~~~hK~l~~P~g~g   81 (239)
                      ++|+.....+++|.+.|+++|.++|++||+++++|.||+.+.+- +..+..  ..++  ..+|+++.+++|++++ .| |
T Consensus       242 ~livve~v~s~~G~~~~l~~I~~la~~~~~~livDEa~s~g~~G-~~G~g~~~~~~v~~~~~dI~~~SfSKs~g~-~G-G  318 (489)
T PLN02483        242 IIVIVEGIYSMEGELCKLPEIVAVCKKYKAYVYLDEAHSIGAVG-KTGRGVCELLGVDPADVDIMMGTFTKSFGS-CG-G  318 (489)
T ss_pred             EEEEECCCCCCCCcccCHHHHHHHHHHcCCEEEEECcCccCccC-CCCCchHHhcCCCcccCcEEEEecchhccc-Cc-e
Confidence            34555555588999999999999999999999999999866531 111100  1111  2489999999999865 34 6


Q ss_pred             EEEeeCcccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhC----HHHHHHHHHHHHHHHHHHHHHHhCCCCe
Q 048438           82 CLWATNPEYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYG----MENLRHFLRSHVNMARLFERLVSGDKRF  156 (239)
Q Consensus        82 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g----~~g~~~~~~~~~~la~~l~~~l~~~~g~  156 (239)
                      +++. +++.+........      ......+.. ..+.....+++.+-    .+...++.++..++.+++++.|+++ |+
T Consensus       319 ~i~~-~~~li~~l~~~~~------~~~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~~~L~~~-G~  390 (489)
T PLN02483        319 YIAG-SKELIQYLKRTCP------AHLYATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFRSELQKM-GF  390 (489)
T ss_pred             EEEc-CHHHHHHHHHhCc------cccccCCcCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHC-CC
Confidence            5553 4444333221000      000011111 11122223344321    1223455677889999999999987 88


Q ss_pred             EEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEE----CCEeEEEEEecC
Q 048438          157 EVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVL----GGIYAIRFATGA  232 (239)
Q Consensus       157 ~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~----~g~~~lR~~~~~  232 (239)
                      +++.+...+++.+.+...                       .....+.++|.++|...+. ...    .+...+|++++.
T Consensus       391 ~v~~~~~sp~~~l~l~~~-----------------------~~~~~~~~~Ll~~GI~v~~-~~fp~~p~~~~~vRi~isa  446 (489)
T PLN02483        391 EVLGDNDSPVMPIMLYNP-----------------------AKIPAFSRECLKQNVAVVV-VGFPATPLLLARARICISA  446 (489)
T ss_pred             cccCCCCCCEEEEEECCH-----------------------HHHHHHHHHHHHCCcEEee-eCCCCCCCCCceEEEEeCC
Confidence            877665566777666431                       1112566677777766553 322    234689999988


Q ss_pred             CCCCcC
Q 048438          233 TLTEER  238 (239)
Q Consensus       233 ~~t~~~  238 (239)
                      .+|.+|
T Consensus       447 ~~t~ed  452 (489)
T PLN02483        447 SHSRED  452 (489)
T ss_pred             CCCHHH
Confidence            777653

>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]

Probab=99.38  E-value=1.4e-11  Score=99.90  Aligned_cols=191  Identities=17%  Similarity=0.177  Sum_probs=127.4

Q ss_pred             cEEEEEecCC-CCcccccChhHHHHHHHHhCCEEEEecccccccccCccccc---ccCCCCCcceEEEcCcccCCCcccc
Q 048438            5 PLFLCATIGT-TAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRH---FIDGVEGADSFSLNAHKWFFATLDC   80 (239)
Q Consensus         5 p~~vv~t~gt-t~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~---~~~~~~~~Ds~~~~~hK~l~~P~g~   80 (239)
                      -+-+|+|-|- ++.|.+.|+++|++++++||..++||.+|+.+.+ .+..++   .+.-...+|.+.....|.+++-.| 
T Consensus       193 r~klv~TDg~FSMDGdiaPl~ei~~La~kYgaLlfiDecHaTgf~-G~tGrGt~E~~~vm~~vdiinsTLgKAlGga~G-  270 (417)
T KOG1359|consen  193 RLKLVVTDGVFSMDGDIAPLEEISQLAKKYGALLFIDECHATGFF-GETGRGTAEEFGVMGDVDIINSTLGKALGGASG-  270 (417)
T ss_pred             eEEEEEecceeccCCCcccHHHHHHHHHhcCcEEEEeecccceee-cCCCCChHHHhCCCCcceehhhhhhhhhcCCCC-
Confidence            3567777776 9999999999999999999999999999998755 222222   122124699999999999986543 


Q ss_pred             eEEEeeCcc----cccccccCCCCccCCCCceecCCCCC----ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhC
Q 048438           81 CCLWATNPE----YLKNKATESKPVVDYKDWQITLSRSF----RSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSG  152 (239)
Q Consensus        81 g~l~~~~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~  152 (239)
                      |  |...|.    ++++...         +|-+..+-+.    .+.+.+..+-  ..   ...+.+.....+++++.++.
T Consensus       271 G--yttgp~~li~llrqr~R---------pylFSnslppavV~~a~ka~dllm--~s---~~~i~~~~a~~qrfr~~me~  334 (417)
T KOG1359|consen  271 G--YTTGPKPLISLLRQRSR---------PYLFSNSLPPAVVGMAAKAYDLLM--VS---SKEIQSRQANTQRFREFMEA  334 (417)
T ss_pred             C--CccCChhHHHHHHhcCC---------ceeecCCCChhhhhhhHHHHHHHH--hh---HHHHHHHHHHHHHHHHHHHh
Confidence            2  222221    2222211         1222222221    1223332221  11   24455566888999999877


Q ss_pred             CCCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEE---EEEECCEeEEEEE
Q 048438          153 DKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMT---NVVLGGIYAIRFA  229 (239)
Q Consensus       153 ~~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~---~~~~~g~~~lR~~  229 (239)
                       .||++.+.. .+|..+.+.+                       .++..++.+.|.++|...+.   +++.+|+..+|+.
T Consensus       335 -aGftIsg~~-hPI~pv~lGd-----------------------a~lA~~~ad~lLk~Gi~Vigfs~PvVP~gkariRVq  389 (417)
T KOG1359|consen  335 -AGFTISGAS-HPICPVMLGD-----------------------ARLASKMADELLKRGIYVIGFSYPVVPKGKARIRVQ  389 (417)
T ss_pred             -cCceecCCC-CCccceeccc-----------------------HHHHHHHHHHHHhcCceEEeecCCcCCCCceEEEEE
Confidence             599987643 5677777654                       46666888889999987443   4567899999999


Q ss_pred             ecCCCCCcC
Q 048438          230 TGATLTEER  238 (239)
Q Consensus       230 ~~~~~t~~~  238 (239)
                      +..-+|++|
T Consensus       390 iSAaHt~ed  398 (417)
T KOG1359|consen  390 ISAAHTEED  398 (417)
T ss_pred             EehhcCHHH
Confidence            999998875

>PRK08045 cystathionine gamma-synthase; Provisional

Probab=99.37  E-value=1.7e-11  Score=106.70  Aligned_cols=150  Identities=17%  Similarity=0.290  Sum_probs=106.6

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ceE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCC   82 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~   82 (239)
                      +-+|++..-+|.+|.+.|+++|.++|+++|++++||.+|+.+....+     +. . ++|+++.++|||++++.+  .|+
T Consensus       138 tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivDeay~~~~~~~p-----l~-~-gaDivv~S~tK~l~G~~d~~~G~  210 (386)
T PRK08045        138 PKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSPALQNP-----LA-L-GADLVLHSCTKYLNGHSDVVAGV  210 (386)
T ss_pred             CeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccCCc-----hh-h-CCCEEEeecceeccCCCCceeEE
Confidence            45677788899999999999999999999999999999987644322     21 1 489999999999998876  566


Q ss_pred             EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE-cC
Q 048438           83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVV-FP  161 (239)
Q Consensus        83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~-~~  161 (239)
                      +..++++.......          +....+--..++..|.+++  |.+.+..+++++.+.+..+.+.|++.|.++-+ .|
T Consensus       211 vi~~~~~~~~~l~~----------~~~~~g~~~~p~~~~l~~r--gl~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yp  278 (386)
T PRK08045        211 VIAKDPDVVTELAW----------WANNIGVTGGAFDSYLLLR--GLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHP  278 (386)
T ss_pred             EEeCcHHHHHHHHH----------HHHhcCCCCCHHHHHHHHh--hhccHHHHHHHHHHHHHHHHHHHHcCCCEeEEECC
Confidence            65544443322210          0001111233455566655  34568889999999999999999999888633 32


Q ss_pred             -----C-----------CeeEEEEEEcC
Q 048438          162 -----C-----------HFAVVCFRVSP  173 (239)
Q Consensus       162 -----~-----------~~~iv~f~~~~  173 (239)
                           |           ..++++|.+++
T Consensus       279 ~l~~~p~~~~~~~~~~g~g~~~s~~~~~  306 (386)
T PRK08045        279 SLPENQGHEIAARQQKGFGAMLSFELDG  306 (386)
T ss_pred             CCCCCcCHHHHHHhCCCCCceEEEEecC
Confidence                 1           13699999974

>KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism]

Probab=99.37  E-value=1.8e-12  Score=105.15  Aligned_cols=180  Identities=16%  Similarity=0.186  Sum_probs=115.5

Q ss_pred             CCcc-cccChhH---HHHHHHHhCCEEEEeccccccccc---CcccccccCCCCCcceEEEcCcccCCCcccceEEEeeC
Q 048438           15 TAIT-AVDPLKP---LCDVAKQFGIWVHVDAAYAGSACI---FPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWATN   87 (239)
Q Consensus        15 t~~G-~i~pl~~---i~~i~~~~gi~lhvD~A~~~~~~~---~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~   87 (239)
                      +.+| .+.||++   +.++|+++|+.+|+|||.-..+..   ++ .+...   ..+||+++++.|.|++|.|+  ++|.+
T Consensus       165 ~~~Gg~vlPle~~~~v~~lak~~glkLH~DGARi~NAavasgV~-vk~i~---~~fDSVsiCLSKglgAPVGS--ViVG~  238 (384)
T KOG1368|consen  165 NNCGGKVLPLEELDRVKALAKRHGLKLHMDGARIFNAAVASGVP-VKKIC---SAFDSVSICLSKGLGAPVGS--VIVGS  238 (384)
T ss_pred             cccCceEeeHHHHHHHHHHHhccCCeeecchhhhhhHHHHcCCC-HHHHH---HhhhhhhhhhhccCCCCccc--EEEcc
Confidence            4445 7888654   677899999999999996543321   22 11112   24999999999999999765  66666


Q ss_pred             cccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcC-CCeeE
Q 048438           88 PEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFP-CHFAV  166 (239)
Q Consensus        88 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~-~~~~i  166 (239)
                      .+|+.....        ....+.+|.|-..+-..+++-.+  +.-...+++.++.++.+.+.+.+.+++++-.+ .++||
T Consensus       239 k~FI~kA~~--------~RKalGGGmRQsGvLaaaaLval--~~~~~~L~~dHk~A~~lAe~~~~~~~i~v~v~a~etNi  308 (384)
T KOG1368|consen  239 KDFIDKARH--------FRKALGGGMRQSGVLAAAALVAL--DENVPLLRADHKRAKELAEYINTPEEIRVEVPAVETNI  308 (384)
T ss_pred             HHHHHHHHH--------HHHHhcCchhHHHHHHHHHHHHh--hcchHHHHHHHHHHHHHHHHhccccceeeecchhhcce
Confidence            677765431        12344455442222112223222  22234777888999999999998777988766 68999


Q ss_pred             EEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCC
Q 048438          167 VCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTE  236 (239)
Q Consensus       167 v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~  236 (239)
                      +...+.....                      -.+.+.+.+.+.|...+..    ....+|++++---|+
T Consensus       309 v~~~l~q~~~----------------------~~~~l~~~~~k~gi~lm~~----~s~r~Rivlh~Qvt~  352 (384)
T KOG1368|consen  309 VNMVLCQARL----------------------TAEELCKFLEKNGILLMGG----ASRRIRIVLHHQVTD  352 (384)
T ss_pred             eeeecccccC----------------------CHHHHHHHHHHCCeEEeec----cccceEEEEEEecCH
Confidence            9988765432                      1236677777777776653    233588887655444

>PRK07811 cystathionine gamma-synthase; Provisional

Probab=99.37  E-value=2.2e-11  Score=106.18  Aligned_cols=150  Identities=19%  Similarity=0.251  Sum_probs=104.4

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ceE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCC   82 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~   82 (239)
                      +-+|++..-+|.+|.+.|+++|+++|+++|++++||++++.+....+     +. . ++|++++|++|++++|.+  .|+
T Consensus       147 tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD~a~a~~~~~~p-----~~-~-gaDivv~S~sK~l~g~~~~~gG~  219 (388)
T PRK07811        147 TKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTFASPYLQQP-----LA-L-GADVVVHSTTKYIGGHSDVVGGA  219 (388)
T ss_pred             CeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEECCCCccccCCc-----hh-h-CCcEEEecCceeecCCCCcEEEE
Confidence            45777788889999999999999999999999999999987644222     11 1 499999999999998865  466


Q ss_pred             EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc-C
Q 048438           83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF-P  161 (239)
Q Consensus        83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~-~  161 (239)
                      ++++++........          .....+........|..++  +.+.+..++++..++++.+.+.|++.|+++-+. |
T Consensus       220 vv~~~~~l~~~~~~----------~~~~~g~~~s~~~a~l~~~--~L~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP  287 (388)
T PRK07811        220 LVTNDEELDEAFAF----------LQNGAGAVPGPFDAYLTLR--GLKTLAVRMDRHSENAEAVAEFLAGHPEVSTVLYP  287 (388)
T ss_pred             EEECCHHHHHHHHH----------HHHhcCCCCCHHHHHHHHh--ccCcHHHHHHHHHHHHHHHHHHHHhCCCeeEEECC
Confidence            66655433222110          0000111222344454444  345677888888999999999999999886443 2


Q ss_pred             -----C-----------CeeEEEEEEcC
Q 048438          162 -----C-----------HFAVVCFRVSP  173 (239)
Q Consensus       162 -----~-----------~~~iv~f~~~~  173 (239)
                           |           ..++++|.+++
T Consensus       288 ~l~~~~~~~~~~~~~~g~g~~~s~~~~~  315 (388)
T PRK07811        288 GLPSHPGHEVAARQMRGFGGMVSVRLAG  315 (388)
T ss_pred             CCCCCchHHHHHHhcCCCCceEEEEeCC
Confidence                 1           13699999974

>PLN02955 8-amino-7-oxononanoate synthase

Probab=99.36  E-value=1.2e-11  Score=108.81  Aligned_cols=188  Identities=11%  Similarity=0.065  Sum_probs=120.1

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccC--CC-CCcceEEEcCcccCCCcccce
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFID--GV-EGADSFSLNAHKWFFATLDCC   81 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~--~~-~~~Ds~~~~~hK~l~~P~g~g   81 (239)
                      +.+|+.-..-++.|.+-|+++|.++|++||++++||.||+.|.+ .+..++..+  ++ ..+|+++.++.|.+++..  |
T Consensus       250 ~~~Vv~EgV~SmdGdiapL~eL~~L~~~~ga~LiVDEAH~~Gv~-G~~G~G~~e~~g~~~di~ii~~TLsKA~G~~G--G  326 (476)
T PLN02955        250 RKVVVTDSLFSMDGDFAPMEELSQLRKKYGFLLVIDDAHGTFVC-GENGGGVAEEFNCEADVDLCVGTLSKAAGCHG--G  326 (476)
T ss_pred             ceEEEEeCCCCCCCCcCCHHHHHHHHHHcCcEEEEcccccCcee-cCCCCcHHHHhCCCCCCcEEEEeCccchhccC--c
Confidence            34565666679999999999999999999999999999998766 332232211  11 358999999999987653  3


Q ss_pred             EEEeeCc---ccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438           82 CLWATNP---EYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE  157 (239)
Q Consensus        82 ~l~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~  157 (239)
                      ++.. +.   +++.....         .+.+..+-+ ..+.+...+++.+-.+  ..+.++.+++.++|++.+    |++
T Consensus       327 fi~g-s~~~~~~l~~~~~---------~~ifStalpp~~aaa~laal~l~~~~--~~~r~~L~~n~~~fr~~~----G~~  390 (476)
T PLN02955        327 FIAC-SKKWKQLIQSRGR---------SFIFSTAIPVPMAAAAYAAVVVARKE--KWRRKAIWERVKEFKALS----GVD  390 (476)
T ss_pred             eeec-HHHHHHHHHHhCC---------CCeecccccHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHhc----CCC
Confidence            3443 33   23332211         011111111 1122222334433222  235567778888888742    554


Q ss_pred             EEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEE---EEEEEECCEeEEEEEecCCC
Q 048438          158 VVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAY---MTNVVLGGIYAIRFATGATL  234 (239)
Q Consensus       158 ~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~---~~~~~~~g~~~lR~~~~~~~  234 (239)
                      +    .++|+++.+..                       +.....+.++|.++|.+.   ..+++..|...+|+++++.+
T Consensus       391 ~----~sPI~pI~ig~-----------------------~~~a~~~~~~L~~~Gi~v~~i~yPtVP~g~~rLRi~lsA~H  443 (476)
T PLN02955        391 I----SSPIISLVVGN-----------------------QEKALKASRYLLKSGFHVMAIRPPTVPPNSCRLRVTLSAAH  443 (476)
T ss_pred             C----CCCEEEEEeCC-----------------------HHHHHHHHHHHHHCCCEEEEECCCCCCCCCceEEEeeCCCC
Confidence            3    47888888865                       344457788898888763   34455678889999999999


Q ss_pred             CCcC
Q 048438          235 TEER  238 (239)
Q Consensus       235 t~~~  238 (239)
                      |.+|
T Consensus       444 t~ed  447 (476)
T PLN02955        444 TTED  447 (476)
T ss_pred             CHHH
Confidence            9875

>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]

Probab=99.35  E-value=1.7e-11  Score=98.37  Aligned_cols=163  Identities=15%  Similarity=0.105  Sum_probs=110.2

Q ss_pred             CCccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccce
Q 048438            2 GLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCC   81 (239)
Q Consensus         2 g~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g   81 (239)
                      |..|.+...|+.....|.+.|.+.++++|+++|+++++.+|+..|-+++.     ...+ ++||++.|+||.+.+...||
T Consensus       154 g~~~~lallTh~Dg~YGNl~Dakkva~ic~e~gvPlllN~AYt~Grmpvs-----~ke~-g~DFiVgSGHKsmAAs~PiG  227 (382)
T COG1103         154 GDPPALALLTHVDGEYGNLADAKKVAKICREYGVPLLLNCAYTVGRMPVS-----GKEI-GADFIVGSGHKSMAASAPIG  227 (382)
T ss_pred             CCCceEEEEeccCCCcCCchhhHHHHHHHHHcCCceEeecceeecccccc-----cccc-CCCEEEecCccchhccCCee
Confidence            57899999999999999999999999999999999999999999998886     3344 59999999999999888899


Q ss_pred             EEEeeCcccccccccCCCCccCCCCce-ecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Q 048438           82 CLWATNPEYLKNKATESKPVVDYKDWQ-ITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVV  159 (239)
Q Consensus        82 ~l~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~  159 (239)
                      +|-++. ++-......++..+....-. +.++-| ...+-+.+++-.. .+. -++.+...+-+++|.+.|.++.|++-+
T Consensus       228 vl~~~e-E~ae~V~r~Sg~~~~~KEvellGCT~rGapivTlmASfP~V-~eR-VkrWdeEv~kaR~fv~elEkigg~~ql  304 (382)
T COG1103         228 VLAMSE-EWAEIVLRRSGRAFPKKEVELLGCTVRGAPIVTLMASFPHV-VER-VKRWDEEVEKARWFVAELEKIGGVKQL  304 (382)
T ss_pred             EEeehh-HHHHHHHhhcccccccceeeeecccccCchHHHHHhcCHHH-HHH-HHHHHHHHHHHHHHHHHHHHhhhHHHh
Confidence            998854 33211111110001011111 122222 2233333332221 122 234455667899999999999878877


Q ss_pred             cC--CCeeEEEEEEcC
Q 048438          160 FP--CHFAVVCFRVSP  173 (239)
Q Consensus       160 ~~--~~~~iv~f~~~~  173 (239)
                      +.  .+.-++.|.-+.
T Consensus       305 G~rPk~HdLm~Fetp~  320 (382)
T COG1103         305 GERPKNHDLMKFETPV  320 (382)
T ss_pred             CCCCcccceeeecCch
Confidence            63  345577776543

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.34  E-value=4.3e-11  Score=105.50  Aligned_cols=160  Identities=18%  Similarity=0.220  Sum_probs=105.7

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc-ceEE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD-CCCL   83 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g-~g~l   83 (239)
                      +-+|++.+.+|.+|.+.|+++|+++||++|++++||++++.+....+     ++ + ++|+++.++|||+++|.. +|.+
T Consensus       150 tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~a~~~~~~p-----l~-~-gaDivv~S~tK~lgg~g~~~Gg~  222 (431)
T PRK08248        150 TKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFASPYLLRP-----IE-H-GADIVVHSATKFIGGHGTSIGGV  222 (431)
T ss_pred             CeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCCCccccCCh-----hH-c-CCCEEEEcCccccCCCCCceEEE
Confidence            45677778889999999999999999999999999999975533222     21 2 499999999999988853 6666


Q ss_pred             EeeCcccccccc-------cCCCCc-----cCCC-----------CceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHH
Q 048438           84 WATNPEYLKNKA-------TESKPV-----VDYK-----------DWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHV  140 (239)
Q Consensus        84 ~~~~~~~l~~~~-------~~~~~~-----~~~~-----------~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~  140 (239)
                      ++.+........       ......     .+..           .+....|....+...|..++  |.+.+..+++++.
T Consensus       223 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~l~~r--gl~tl~~R~~~~~  300 (431)
T PRK08248        223 IVDSGKFDWKGSGKFPGLTEPDPSYHGLVYTDAVGEAAYITKARVQLLRDLGAALSPFNSFLLLQ--GLETLHLRMERHS  300 (431)
T ss_pred             EEeCCccccccccccccccCCccccccchhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHhc--CcCcHHHHHHHHH
Confidence            664332211000       000000     0000           00001123344455565554  5677789999999


Q ss_pred             HHHHHHHHHHhCCCCeEEE-cC-----C------------CeeEEEEEEcC
Q 048438          141 NMARLFERLVSGDKRFEVV-FP-----C------------HFAVVCFRVSP  173 (239)
Q Consensus       141 ~la~~l~~~l~~~~g~~~~-~~-----~------------~~~iv~f~~~~  173 (239)
                      +++.++.+.|++.|+++-+ .|     |            ..++++|.+++
T Consensus       301 ~nA~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~~g~gg~~sf~l~~  351 (431)
T PRK08248        301 ENALAVAKFLEEHEAVEWVSYPGLPSHPSYELAKKYLPKGQGAILTFGIKG  351 (431)
T ss_pred             HHHHHHHHHHHhCCCcceEECCCCCCCccHHHHHHhCcCCCceEEEEEecC
Confidence            9999999999999987633 32     1            13599999965

>PRK08064 cystathionine beta-lyase; Provisional

Probab=99.34  E-value=2.4e-11  Score=105.94  Aligned_cols=150  Identities=18%  Similarity=0.281  Sum_probs=105.3

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ceE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCC   82 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~   82 (239)
                      +-+|++++.+|.+|.+.|+++|.++||++|++++||+||+.+....+     . .+ ++|+++.++|||+++|.+  +|+
T Consensus       139 tklV~l~~p~NptG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~~~-----~-~~-g~Divv~S~tK~~~G~~~~laG~  211 (390)
T PRK08064        139 TKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFLTPLLQKP-----L-DL-GADVVLHSATKFLAGHSDVLAGL  211 (390)
T ss_pred             ceEEEEECCCCCCcEeccHHHHHHHHHHcCCEEEEECCCCcccccCc-----h-hh-CCcEEEeecceeccCCccceeEE
Confidence            46788889999999999999999999999999999999987644222     1 12 499999999999999987  587


Q ss_pred             EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE-EEcC
Q 048438           83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE-VVFP  161 (239)
Q Consensus        83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~-~~~~  161 (239)
                      +++++++.......          .....+....+...|..++  |.+.+..++++..+.+..+.+.|++.|.+. ++.|
T Consensus       212 ~v~~~~~~~~~l~~----------~~~~~g~~~~~~~a~l~~~--gl~tl~~R~~~~~~~a~~la~~L~~~~~v~~v~yp  279 (390)
T PRK08064        212 AVVKDEELAQKLYF----------LQNSFGAVLGVQDCWLVLR--GLKTLHVRLEHSSETANKIALYLQEHPKVQNVYYP  279 (390)
T ss_pred             EEeCCHHHHHHHHH----------HHHhcCCCCCHHHHHHHHc--ccCcHHHHHHHHHHHHHHHHHHHhcCCCcceEECC
Confidence            77765444332211          0111122222344454443  455667888888999999999999887653 3332


Q ss_pred             ----------------CCeeEEEEEEcC
Q 048438          162 ----------------CHFAVVCFRVSP  173 (239)
Q Consensus       162 ----------------~~~~iv~f~~~~  173 (239)
                                      ...++++|.+++
T Consensus       280 ~l~~~p~~~~~~~~~~g~gg~~sf~~~~  307 (390)
T PRK08064        280 GLQTHLGFDIQQSQATSAGAVLSFTLQS  307 (390)
T ss_pred             CCCCCccHHHHHHhCCCcceEEEEEECC
Confidence                            124699999864

>cd00615 Orn_deC_like Ornithine decarboxylase family

Probab=99.34  E-value=1.4e-12  Score=109.61  Aligned_cols=139  Identities=14%  Similarity=0.066  Sum_probs=85.3

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL   83 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l   83 (239)
                      .+-+|+++.. |.+|.+.|+++|+++||++|++++||+||++.....+........ .++|+++.|+||++.+|.++|++
T Consensus       154 ~~k~v~l~~p-~~~G~~~dl~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~~~-~~~div~~S~hK~l~g~~~~~~l  231 (294)
T cd00615         154 DAKAAVITNP-TYYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAM-AGADIVVQSTHKTLPALTQGSMI  231 (294)
T ss_pred             CceEEEEECC-CCCCEecCHHHHHHHHHhcCCeEEEECcchhhhccCcccCcchhh-cCCcEEEEchhcccchHhHHHHH
Confidence            3566777764 789999999999999999999999999998753322211111111 24999999999999988888888


Q ss_pred             EeeCcccccccccCCCCccCCCCceecCCCC-CCh-HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhC
Q 048438           84 WATNPEYLKNKATESKPVVDYKDWQITLSRS-FRS-LKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSG  152 (239)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~  152 (239)
                      ++++. ........  ...    ...+.+.+ +.. ..+-.+++.+..++ +++.++..++++++++.|.+
T Consensus       232 ~~~~~-~~~~~~~~--~~~----~~~~ttsps~~~~asl~~a~~~~~~~g-~~~~~~~~~~~~~~r~~l~~  294 (294)
T cd00615         232 HVKGD-LVNPDRVN--EAL----NLHQSTSPSYLILASLDVARAMMALEG-KELVEELIELALYARQEINK  294 (294)
T ss_pred             HhCCC-cCCHHHHH--HHH----HHHCCCCcHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHhC
Confidence            77543 11110000  000    00111111 111 22223344443334 44677788889999888753

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.

>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.34  E-value=1.2e-10  Score=102.65  Aligned_cols=160  Identities=17%  Similarity=0.177  Sum_probs=106.0

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc-ceEE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD-CCCL   83 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g-~g~l   83 (239)
                      +-+|++.+.+|.+|.+.|+++|+++||++|++++||++|+.+...-+     + .+ ++|+++.|+||++++|.+ .|.+
T Consensus       149 tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~a~a~~~~~~p-----l-~~-gaDivv~S~tK~lgg~~~~~gG~  221 (427)
T PRK05994        149 TKAIFIESIANPGGTVTDIAAIAEVAHRAGLPLIVDNTLASPYLIRP-----I-EH-GADIVVHSLTKFLGGHGNSMGGI  221 (427)
T ss_pred             CeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCccccccCCc-----c-cc-CCcEEEEcCccccCCCCCcEEEE
Confidence            45777788899999999999999999999999999999987644222     2 12 599999999999988765 4545


Q ss_pred             EeeCc--ccccccc--------cCCCC--ccCC-C----------CceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHH
Q 048438           84 WATNP--EYLKNKA--------TESKP--VVDY-K----------DWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHV  140 (239)
Q Consensus        84 ~~~~~--~~l~~~~--------~~~~~--~~~~-~----------~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~  140 (239)
                      ++...  ++.....        ...+.  ..+. .          ......|.....+..|..++  |.+.+..++++..
T Consensus       222 v~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~A~l~~~--~l~tL~~r~~~~~  299 (427)
T PRK05994        222 IVDGGTFDWSKSGKYPMLSEPRPEYHGLVLHETFGNFAFAIAARVLGLRDLGPAISPFNAFLILT--GIETLPLRMQRHS  299 (427)
T ss_pred             EEeCCccccccccccccccCCcchhhhhhHHHHhhhhhhHHHHHHHHHHhcCCCCCHHHHHHHHc--CcccHHHHHHHHH
Confidence            54322  1211000        00000  0000 0          00001233344555665555  5678889999999


Q ss_pred             HHHHHHHHHHhCCCCeEEE-cC-----C------------CeeEEEEEEcC
Q 048438          141 NMARLFERLVSGDKRFEVV-FP-----C------------HFAVVCFRVSP  173 (239)
Q Consensus       141 ~la~~l~~~l~~~~g~~~~-~~-----~------------~~~iv~f~~~~  173 (239)
                      +++.++.+.|++.|+++-+ .|     +            ..++++|.+++
T Consensus       300 ~~a~~la~~L~~~p~v~~v~yP~l~~~~~~~~~~~~~~~g~g~~~sf~l~~  350 (427)
T PRK05994        300 DNALAVAEWLKGHPKVSWVNYAGLPDDPYHALAQKYSPKGAGAVFTFGLKG  350 (427)
T ss_pred             HHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhcCCCceEEEEEEecC
Confidence            9999999999999987633 32     0            14599999974

>PRK08776 cystathionine gamma-synthase; Provisional

Probab=99.34  E-value=4.4e-11  Score=104.69  Aligned_cols=150  Identities=20%  Similarity=0.318  Sum_probs=105.4

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ceE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCC   82 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~   82 (239)
                      +-+|++..-+|.+|.+.|+++|+++|+++|++++||++|+.+...-+     +. + ++|.++.|+||++++|.+  .|.
T Consensus       146 tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~~~~~p-----l~-~-gaDivv~S~tK~l~g~~~~~~G~  218 (405)
T PRK08776        146 PKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSPALQKP-----LE-F-GADLVLHSTTKYINGHSDVVGGA  218 (405)
T ss_pred             CeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCcccccCCc-----cc-c-cCCEEEecCceeecCCCCceEEE
Confidence            45677778889999999999999999999999999999976543211     21 2 499999999999998865  466


Q ss_pred             EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE-cC
Q 048438           83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVV-FP  161 (239)
Q Consensus        83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~-~~  161 (239)
                      ++.+++++......          +....+-....+..|..++  |.+.++.++++..+++..+.+.|++.|.++-+ .|
T Consensus       219 vv~~~~~l~~~l~~----------~~~~~g~~~s~~~a~l~~~--gl~tl~~r~~~~~~na~~la~~L~~~p~v~~V~yP  286 (405)
T PRK08776        219 VVARDAELHQQLVW----------WANALGLTGSPFDAFLTLR--GLRTLDARLRVHQENADAIAALLDGHAAVNQVYYP  286 (405)
T ss_pred             EEeCCHHHHHHHHH----------HHHhcCCCCCHHHHHHHHh--hhCcHHHHHHHHHHHHHHHHHHHHcCCCeeEEECC
Confidence            65554443322210          0001111234455665554  45677889999999999999999999887633 32


Q ss_pred             -----C-----------CeeEEEEEEcC
Q 048438          162 -----C-----------HFAVVCFRVSP  173 (239)
Q Consensus       162 -----~-----------~~~iv~f~~~~  173 (239)
                           +           ..++++|.+++
T Consensus       287 ~l~~~~~~~~~~~~~~g~g~~~s~~~~~  314 (405)
T PRK08776        287 GLASHPGHALAARQQKGFGAMLSFELEG  314 (405)
T ss_pred             CCCCCcCHHHHHhcCCCCceEEEEEEcC
Confidence                 1           13699999975

>TIGR01328 met_gam_lyase methionine gamma-lyase

Probab=99.34  E-value=3e-11  Score=105.34  Aligned_cols=151  Identities=17%  Similarity=0.252  Sum_probs=103.9

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ceE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCC   82 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~   82 (239)
                      +-+|++...+|.+|.+.|+++|+++||++|++++||+||+.+...-+     +.  .++|+++.+++|++++|.+  .|+
T Consensus       145 tklV~le~p~Np~G~v~dl~~I~~la~~~gi~livD~a~a~~~~~~~-----~~--~g~Divv~S~sK~lgg~g~~~gG~  217 (391)
T TIGR01328       145 TKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNTFATPMLTNP-----VA--LGVDVVVHSATKYIGGHGDVVAGL  217 (391)
T ss_pred             CeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCchhccCCc-----hh--cCCCEEEccccccccCCCCceEEE
Confidence            45777778889999999999999999999999999999986644222     11  1499999999999988765  355


Q ss_pred             EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc-C
Q 048438           83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF-P  161 (239)
Q Consensus        83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~-~  161 (239)
                      + +.+++++.......        .....+........|.+++  +.+.+..++++..++++++.+.|++.|+++-+. |
T Consensus       218 v-~~~~~li~~l~~~~--------~~~~~g~~l~~~~a~l~l~--~L~tl~~r~~~~~~na~~la~~L~~~p~v~~v~yp  286 (391)
T TIGR01328       218 I-CGKAELLQQIRMVG--------IKDMTGSVISPFDAWLILR--GLKTLNIRMKRHSENAMKVAEYLKSHPAVEKVYYP  286 (391)
T ss_pred             E-EcCHHHHHHHHHHH--------HHhCCCCCCCcHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECC
Confidence            4 44555443222100        0001122233444555555  345667788889999999999999999886443 2


Q ss_pred             -----C-----------CeeEEEEEEcC
Q 048438          162 -----C-----------HFAVVCFRVSP  173 (239)
Q Consensus       162 -----~-----------~~~iv~f~~~~  173 (239)
                           |           ..++++|.+++
T Consensus       287 ~l~~~~~~~~~~~~~~~~g~~~s~~~~~  314 (391)
T TIGR01328       287 GFEDHPGHDIAAKQMRMGGGMITFELKG  314 (391)
T ss_pred             CCCCCccHHHHHHhCCCCCceEEEEeCC
Confidence                 1           13599999974

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.

>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated

Probab=99.33  E-value=3.2e-11  Score=104.78  Aligned_cols=150  Identities=19%  Similarity=0.270  Sum_probs=103.5

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ceE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCC   82 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~   82 (239)
                      +-+|++...++.+|.+.|+++|+++||++|++++||++++.+....+     . ++ ++|++++|+||++++|..  .|+
T Consensus       135 t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD~t~a~~~~~~p-----~-~~-gaDivv~S~tK~l~g~~d~~gG~  207 (380)
T PRK06176        135 TKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATPYYQNP-----L-LL-GADIVVHSGTKYLGGHSDVVAGL  207 (380)
T ss_pred             ceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEECCccccccCCc-----c-cc-CCCEEEecCceeccCCccceeeE
Confidence            45677778899999999999999999999999999999986543222     1 22 499999999999998864  565


Q ss_pred             EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE-cC
Q 048438           83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVV-FP  161 (239)
Q Consensus        83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~-~~  161 (239)
                      +..+++++......          +....+....+...|..++  |.+.+..++++..+.+.++.+.|++.|.+.-+ .|
T Consensus       208 vv~~~~~~~~~~~~----------~~~~~G~~~~~~~~~l~~~--gl~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~~p  275 (380)
T PRK06176        208 VTTNNEALAQEIAF----------FQNAIGGVLGPQDSWLLQR--GIKTLGLRMEAHQKNALCVAEFLEKHPKVEKVYYP  275 (380)
T ss_pred             EEecHHHHHHHHHH----------HHHHhcCCCCHHHHHHHHh--ccCcHHHHHHHHHHHHHHHHHHHHhCCCeeEEECC
Confidence            65544433222110          0111122223344454443  55667788888889999999999998887543 22


Q ss_pred             -----C-----------CeeEEEEEEcC
Q 048438          162 -----C-----------HFAVVCFRVSP  173 (239)
Q Consensus       162 -----~-----------~~~iv~f~~~~  173 (239)
                           +           ..++++|.+++
T Consensus       276 ~l~~~~~~~~~~~~~~g~g~~~s~~~~~  303 (380)
T PRK06176        276 GLPTHPNHELAKKQMRGFSGMLSFTLKN  303 (380)
T ss_pred             CCCCCccHHHHHhhCCCCceEEEEEECC
Confidence                 1           13699999864

>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase

Probab=99.33  E-value=3.4e-11  Score=104.69  Aligned_cols=148  Identities=16%  Similarity=0.284  Sum_probs=101.9

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc-c-eE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD-C-CC   82 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g-~-g~   82 (239)
                      +-+|++...+|.+|.+.|+++|.++||++|++++||++|+.+...-+     + .+ ++|+++.|+||+++++.. . |+
T Consensus       140 tklV~le~p~np~g~~~dl~~I~~la~~~gi~livD~a~~~~~~~~p-----l-~~-g~Divv~S~sK~l~g~g~~~gG~  212 (380)
T TIGR01325       140 TKLVFVETPSNPLGELVDIAALAELAHAIGALLVVDNVFATPVLQQP-----L-KL-GADVVVYSATKHIDGQGRVMGGV  212 (380)
T ss_pred             ceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCCc-----h-hh-CCCEEEeeccceecCCCCeEEEE
Confidence            55777788889999999999999999999999999999975433211     1 11 489999999999987742 3 44


Q ss_pred             EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc-C
Q 048438           83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF-P  161 (239)
Q Consensus        83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~-~  161 (239)
                      ++ .+++.+.....          +....+........|.+++  +.+.+..++++..+.++++.+.|++.|+++-+. |
T Consensus       213 vv-~~~~~~~~l~~----------~~~~~g~~~~p~~a~~~l~--~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~yp  279 (380)
T TIGR01325       213 IA-GSEELMAEVAV----------YLRHTGPAMSPFNAWVLLK--GLETLSLRMQKQFDSALAIAEWLQAQPQVQAVYYP  279 (380)
T ss_pred             EE-eCHHHHHHHHH----------HHHhhCCCCCHHHHHHHHh--ccCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECC
Confidence            44 34443322210          0001122333444555554  456677788899999999999999998876432 2


Q ss_pred             -----C-----------CeeEEEEEEc
Q 048438          162 -----C-----------HFAVVCFRVS  172 (239)
Q Consensus       162 -----~-----------~~~iv~f~~~  172 (239)
                           |           ..++++|.++
T Consensus       280 ~l~s~~~~~~~~~~~~g~g~~~s~~l~  306 (380)
T TIGR01325       280 GLPDHPQHELARRQQSGGGTVIGFDVA  306 (380)
T ss_pred             CCCCCccHHHHHhhCCCCceEEEEEEC
Confidence                 1           1469999997

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.

>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase

Probab=99.33  E-value=4.5e-11  Score=103.91  Aligned_cols=150  Identities=19%  Similarity=0.317  Sum_probs=107.5

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ceE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCC   82 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~   82 (239)
                      +-+|++...+|.+|.+.|+++|+++||++|++++||.+|+.+....+     +. + ++|+++.+++||++++.+  .|+
T Consensus       137 tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~~p-----l~-~-gaDivv~S~sK~l~G~~~~~~G~  209 (382)
T TIGR02080       137 PKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLSPALQNP-----LA-L-GADLVLHSCTKYLNGHSDVIAGA  209 (382)
T ss_pred             ceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCcccccCCc-----hh-h-CCCEEEeecceeccCCCCceeEE
Confidence            56777888899999999999999999999999999999976643222     11 1 489999999999998876  666


Q ss_pred             EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE-cC
Q 048438           83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVV-FP  161 (239)
Q Consensus        83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~-~~  161 (239)
                      +.++++........          +....|.....+..|..++  |.+.+..+++++.+++..+.+.|++.|.++-+ .|
T Consensus       210 i~~~~~~~~~~l~~----------~~~~~g~~~sp~~a~l~lr--~l~tl~~R~~~~~~na~~~a~~L~~~p~v~~V~yP  277 (382)
T TIGR02080       210 VIAKDPQVAEELAW----------WANNLGVTGGAFDSYLTLR--GLRTLVARMRLQQRNAQAIVEYLQTQPLVKKIYYP  277 (382)
T ss_pred             EEeCCHHHHHHHHH----------HHHccCCCCCHHHHHHHHc--ccchHHHHHHHHHHHHHHHHHHHHhCCCeeEEECC
Confidence            66655443322210          1111122334556666655  45677888999999999999999998888643 33


Q ss_pred             -----C-----------CeeEEEEEEcC
Q 048438          162 -----C-----------HFAVVCFRVSP  173 (239)
Q Consensus       162 -----~-----------~~~iv~f~~~~  173 (239)
                           |           ..++++|.+++
T Consensus       278 ~l~~~~~~~~~~~~~~g~g~~~s~~~~~  305 (382)
T TIGR02080       278 GLPDHPGHEIAARQQKGFGAMLSFELKG  305 (382)
T ss_pred             CCCCCccHHHHHhhCCCCCceEEEEecC
Confidence                 1           13699999974

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=99.32  E-value=6.1e-11  Score=103.11  Aligned_cols=198  Identities=12%  Similarity=0.043  Sum_probs=115.4

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccc-cccCCC-CCcceEEEcCcccCCCcccce
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFR-HFIDGV-EGADSFSLNAHKWFFATLDCC   81 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~-~~~~~~-~~~Ds~~~~~hK~l~~P~g~g   81 (239)
                      .+.+|+.....+.+|.+.|+++|.++|++||+++++|++|+.+.+...... ....++ ...|++..+++|+++.+.  |
T Consensus       163 ~~~~v~~~~v~~~tG~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g--G  240 (385)
T TIGR01825       163 GKKLIVTDGVFSMDGDVAPLPEIVELAERYGAVTYVDDAHGSGVMGEAGRGTVHHFGLEDKVDIQVGTLSKAIGVVG--G  240 (385)
T ss_pred             CCeEEEEecCCcCCCCccCHHHHHHHHHHhCCEEEEECcccccCcCCCCCccHhhcCCCcCCcEEEEeccHHhhcCC--C
Confidence            355667777778999999999999999999999999999976644311000 000011 248999999999986543  5


Q ss_pred             EEEeeCcccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc
Q 048438           82 CLWATNPEYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF  160 (239)
Q Consensus        82 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~  160 (239)
                      +++. +++.+.......      ..+....... ....++..+++.+..  ..+..++..++.+++.+.|++. |+++. 
T Consensus       241 ~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~al~~~~~--~~~~~~~~~~~~~~l~~~L~~~-g~~~~-  309 (385)
T TIGR01825       241 YAAG-HKELIEYLKNRA------RPFLFSTAQPPAVVAALAAAVDELQR--SPELMERLWDNTRFFKAGLGKL-GYDTG-  309 (385)
T ss_pred             EEec-CHHHHHHHHHhC------ccccccCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHc-CCCCC-
Confidence            5543 334333221100      0011111111 111233334443311  1245566678889999999885 88765 


Q ss_pred             CCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEE----ECCEeEEEEEecCCCCC
Q 048438          161 PCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVV----LGGIYAIRFATGATLTE  236 (239)
Q Consensus       161 ~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~----~~g~~~lR~~~~~~~t~  236 (239)
                      .+..+++.+.++..                       .....+.+.|.++|.. +....    ..|...+|++++..+|+
T Consensus       310 ~~~~~~~~~~~~~~-----------------------~~~~~~~~~L~~~gi~-v~~~~~~~~~~~~~~iRi~~~~~~~~  365 (385)
T TIGR01825       310 GSETPITPVVIGDE-----------------------KAAQEFSRRLFDEGIF-AQSIVFPTVPRGTARIRNIPTAEHTK  365 (385)
T ss_pred             CCCCCEEEEEECCH-----------------------HHHHHHHHHHHHCCcE-EcccCCCCCCCCCceEEEEEcCCCCH
Confidence            34456666665321                       1123567777777554 33221    22457899998777665


Q ss_pred             cC
Q 048438          237 ER  238 (239)
Q Consensus       237 ~~  238 (239)
                      +|
T Consensus       366 e~  367 (385)
T TIGR01825       366 DD  367 (385)
T ss_pred             HH
Confidence            53

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=99.32  E-value=9.4e-11  Score=102.35  Aligned_cols=208  Identities=12%  Similarity=0.054  Sum_probs=119.0

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccc-----cCCCCCcceEEEcCcccCCCcc
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF-----IDGVEGADSFSLNAHKWFFATL   78 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~-----~~~~~~~Ds~~~~~hK~l~~P~   78 (239)
                      .+.+|++-...+++|.+.|+++|.++|++||++++||.+|+.+.+ ....+..     +....++|.++++.+|.++ |.
T Consensus       138 ~t~~vi~E~v~~~~G~i~~l~~i~~l~~~~g~~livDe~~~~g~~-g~~G~g~~~~~g~~p~~~~Div~~slsk~~g-~~  215 (392)
T PLN03227        138 QRRFLVVEGLYKNTGTLAPLKELVALKEEFHYRLILDESFSFGTL-GKSGRGSLEHAGLKPMVHAEIVTFSLENAFG-SV  215 (392)
T ss_pred             CcEEEEEcCCcCCCCcccCHHHHHHHHHHcCCEEEEECccccccc-CCCCCcHHHHcCCCCCCCceEEEeechhhhh-cc
Confidence            345677777778899999999999999999999999999985543 1111100     1112248999999999865 54


Q ss_pred             cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438           79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNY-GMENLRHFLRSHVNMARLFERLVSGDKRFE  157 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~g~~~~~~~~~~la~~l~~~l~~~~g~~  157 (239)
                      | |++.. +++.........      ....+.  ....++..++++..+ .....+++.++.+++.+++++.|++. ++.
T Consensus       216 g-g~v~~-~~~~~~~~~~~~------~~~~~~--~~~~p~~~~aa~~al~~~~~~~~~~~~l~~~~~~l~~~L~~~-~~~  284 (392)
T PLN03227        216 G-GMTVG-SEEVVDHQRLSG------SGYCFS--ASAPPFLAKADATATAGELAGPQLLNRLHDSIANLYSTLTNS-SHP  284 (392)
T ss_pred             C-cEEec-CHHHHHHHHHhC------cCcccc--CCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhc-CCc
Confidence            3 33333 333332211000      001111  111122223222111 11112456777889999999999752 332


Q ss_pred             ----------EEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEE-------EE
Q 048438          158 ----------VVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNV-------VL  220 (239)
Q Consensus       158 ----------~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-------~~  220 (239)
                                +.....++|+.+.+.+...              ......+.....+.+.+.++|.+.....       ..
T Consensus       285 ~~~~~rg~~~~~~~~~~~i~~i~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~~~~~~~  350 (392)
T PLN03227        285 YALKLRNRLVITSDPISPIIYLRLSDQEA--------------TRRTDETLILDQIAHHSLSEGVAVVSTGGHVKKFLQL  350 (392)
T ss_pred             cccccccccccCCCCCCCEEEEEeCCHHH--------------hhhhhhhhHHHHHHHHHHHCCCEEEecccccCCcCCC
Confidence                      1223457889888854210              0000012233577788888887654210       11


Q ss_pred             CCEeEEEEEecCCCCCcC
Q 048438          221 GGIYAIRFATGATLTEER  238 (239)
Q Consensus       221 ~g~~~lR~~~~~~~t~~~  238 (239)
                      -....+|++++..+|++|
T Consensus       351 ~P~~~iR~~~~~~~t~ee  368 (392)
T PLN03227        351 VPPPCLRVVANASHTRED  368 (392)
T ss_pred             CCCceEEEEecCCCCHHH
Confidence            124789999999999875

>PRK08133 O-succinylhomoserine sulfhydrylase; Validated

Probab=99.31  E-value=5.1e-11  Score=103.91  Aligned_cols=150  Identities=19%  Similarity=0.262  Sum_probs=102.3

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc-ceEE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD-CCCL   83 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g-~g~l   83 (239)
                      +-+|++...+|.+|.+.|+++|+++||++|++++||.+++.+....+     +. . ++|+++.|+||+++++.. .|.+
T Consensus       147 tklV~ie~p~NptG~v~dl~~I~~la~~~gi~livD~t~~~~~~~~p-----l~-~-g~Divv~S~sK~~~g~g~~~GG~  219 (390)
T PRK08133        147 TKLFFLETPSNPLTELADIAALAEIAHAAGALLVVDNCFCTPALQQP-----LK-L-GADVVIHSATKYLDGQGRVLGGA  219 (390)
T ss_pred             CeEEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEEECCCcccccCCc-----hh-h-CCcEEEeecceeecCCcceEeEE
Confidence            45677778889999999999999999999999999999876544222     11 1 489999999999876542 3333


Q ss_pred             EeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcCC-
Q 048438           84 WATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPC-  162 (239)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~~-  162 (239)
                      ++.+++.+.....          +....+........|..++  |.+.+..++++..+++.++.+.|++.|+++-+..| 
T Consensus       220 vv~~~~~~~~~~~----------~~~~~g~~~~~~~a~~~l~--gl~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~yp~  287 (390)
T PRK08133        220 VVGSKELMEEVFG----------FLRTAGPTLSPFNAWVFLK--GLETLSLRMEAHSANALALAEWLEAHPGVERVFYPG  287 (390)
T ss_pred             EEcCHHHHHHHHH----------HHHHhCCCCCHHHHHHHHc--ccchHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCC
Confidence            4333333322110          0001122233344555554  45678889999999999999999999888644321 


Q ss_pred             ----------------CeeEEEEEEcC
Q 048438          163 ----------------HFAVVCFRVSP  173 (239)
Q Consensus       163 ----------------~~~iv~f~~~~  173 (239)
                                      ..++++|.+++
T Consensus       288 l~~~p~~~~~~~~~~g~g~~~s~~l~~  314 (390)
T PRK08133        288 LPSHPQHELAKRQQKGGGAIVSFEVKG  314 (390)
T ss_pred             CCCCccHHHHHHhCCCCceEEEEEEcC
Confidence                            14699999964

>PRK07671 cystathionine beta-lyase; Provisional

Probab=99.31  E-value=5.8e-11  Score=103.08  Aligned_cols=148  Identities=19%  Similarity=0.302  Sum_probs=103.4

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ceE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCC   82 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~   82 (239)
                      +-+|++..-+|.+|.+.|+++|+++|+++|++++||++++.+...-+     .. + ++|+++.+++||+++|.+  .|+
T Consensus       135 tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD~a~~~~~~~~p-----~~-~-g~Divv~S~sK~l~G~~~~~~G~  207 (377)
T PRK07671        135 TKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTFMTPYWQSP-----IS-L-GADIVLHSATKYLGGHSDVVAGL  207 (377)
T ss_pred             CeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCCccccCCh-----hh-h-CCeEEEecCcccccCCccceeEE
Confidence            45677778889999999999999999999999999999976433211     11 1 489999999999998864  566


Q ss_pred             EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc-C
Q 048438           83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF-P  161 (239)
Q Consensus        83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~-~  161 (239)
                      ++++++........          +....+........|..++  +.+.+..++++..++++++.+.|++.|++.-+. |
T Consensus       208 ~v~~~~~l~~~~~~----------~~~~~g~~~~~~~a~l~~~--~l~tl~~R~~~~~~na~~la~~L~~~~~v~~v~~p  275 (377)
T PRK07671        208 VVVNSPELAEDLHF----------VQNSTGGILGPQDSWLLLR--GLKTLGIRMEEHETNSRAIAEFLNNHPAVNKVYYP  275 (377)
T ss_pred             EEeCcHHHHHHHHH----------HHHhhcCCCCHHHHHHHHc--CcChHHHHHHHHHHHHHHHHHHHHcCCCeeEEECC
Confidence            66655433322210          0111122333455565555  345667788999999999999999998875443 2


Q ss_pred             C----------------CeeEEEEEE
Q 048438          162 C----------------HFAVVCFRV  171 (239)
Q Consensus       162 ~----------------~~~iv~f~~  171 (239)
                      .                ..++++|.+
T Consensus       276 ~l~~~~~~~~~~~~~~g~g~~~s~~~  301 (377)
T PRK07671        276 GLPSHPNHELAKEQANGFGGMISFDV  301 (377)
T ss_pred             CCCCCccHHHHHhhCCCCCceEEEEe
Confidence            1                136999998

>PRK05968 hypothetical protein; Provisional

Probab=99.31  E-value=3.5e-11  Score=104.94  Aligned_cols=149  Identities=19%  Similarity=0.256  Sum_probs=102.4

Q ss_pred             EEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ceEE
Q 048438            6 LFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCCL   83 (239)
Q Consensus         6 ~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~l   83 (239)
                      -+|++..-++.++.+.|+++|+++||++|++++||++|+.+...-+     .. + ++|+++.|+||++++|.+  .|++
T Consensus       149 klV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a~a~~~~~~p-----~~-~-g~Divv~S~tK~l~g~~~~~gG~i  221 (389)
T PRK05968        149 KLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSWASPVFQRP-----IT-L-GVDLVIHSASKYLGGHSDTVAGVV  221 (389)
T ss_pred             CEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcchhccCc-----hh-c-CCcEEEeeccccccCCCCeEEEEE
Confidence            3566667778888899999999999999999999999977643222     11 1 489999999999999865  5655


Q ss_pred             EeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcCC-
Q 048438           84 WATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPC-  162 (239)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~~-  162 (239)
                      + .+++.+.......         ....+-.......|..++  +.+.+..++++..++++++.+.|++.|+++.+..| 
T Consensus       222 ~-~~~~~~~~l~~~~---------~~~~g~~~~~~~A~~~l~--~L~tl~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~  289 (389)
T PRK05968        222 A-GSKEHIARINAEA---------YPYLGAKLSPFEAWLLLR--GLRTLPLRMKAHEASALEIARRLKAHPVVERVCHPA  289 (389)
T ss_pred             E-ECHHHHHHHHHHH---------HHhCCCCCChHHHHHHHc--ccCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCC
Confidence            5 4444433221100         000111122344444444  44566889999999999999999999998766532 


Q ss_pred             -----------CeeEEEEEEcC
Q 048438          163 -----------HFAVVCFRVSP  173 (239)
Q Consensus       163 -----------~~~iv~f~~~~  173 (239)
                                 ..++++|.+++
T Consensus       290 l~~~~~~~~~g~g~~~sf~~~~  311 (389)
T PRK05968        290 LANHPPAGLSGTSGLFSFIFRE  311 (389)
T ss_pred             CCCChHHhCCCCceEEEEEECC
Confidence                       14699999974

>KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism]

Probab=99.31  E-value=6.6e-11  Score=99.61  Aligned_cols=198  Identities=19%  Similarity=0.178  Sum_probs=130.9

Q ss_pred             CccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccc--cCC-CCCcceEEEcCcccCCCccc
Q 048438            3 LIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--IDG-VEGADSFSLNAHKWFFATLD   79 (239)
Q Consensus         3 ~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~~~-~~~~Ds~~~~~hK~l~~P~g   79 (239)
                      .+|-+|..-...++.|.+-||+||++++++||+...+|..|+.|.. .+...+.  -+| +.++|.|+..+-|.+++-  
T Consensus       302 svPKivAFEtVhSM~GavcpleelcDvah~yGAiTFlDEVHAVGlY-G~rGaGvgerdGvm~kvDiIsGTLgKafGcV--  378 (570)
T KOG1360|consen  302 SVPKIVAFETVHSMDGAVCPLEELCDVAHKYGAITFLDEVHAVGLY-GPRGAGVGERDGVMHKVDIISGTLGKAFGCV--  378 (570)
T ss_pred             CCCceEEEeeeeccCCCcCCHHHHHHHHHHhCceeeeehhhhhccc-cCCCCCccccCCcchhhhhcccchhhhcccc--
Confidence            4688999999999999999999999999999999999999988754 3222110  122 346999999999997653  


Q ss_pred             ceEEEeeCcccccccccCCCCccCCCCceecCCCCCCh-HHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438           80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRS-LKLWFVIRNY-GMENLRHFLRSHVNMARLFERLVSGDKRFE  157 (239)
Q Consensus        80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~-g~~g~~~~~~~~~~la~~l~~~l~~~~g~~  157 (239)
                       |..+......+....+...      .+-+..+-+... .+...+.+.+ ..+|. ...+.+++..+|+++.|.++ |+.
T Consensus       379 -GGYIAat~~LvDmiRSyAa------GFIFTTSLPP~vl~GAleaVr~lk~~eg~-~lR~~hqrnv~~~kq~l~~~-GiP  449 (570)
T KOG1360|consen  379 -GGYIAATRKLVDMIRSYAA------GFIFTTSLPPMVLAGALEAVRILKSEEGR-VLRRQHQRNVKYVKQLLMEL-GIP  449 (570)
T ss_pred             -cceehhhhhHHHHHHHhcC------ceEEecCCChHHHHhHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHHHHHc-CCc
Confidence             3333323222222211100      111222222111 1122233333 23343 33345778889999999886 998


Q ss_pred             EEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEE----EEEECCEeEEEEEecCC
Q 048438          158 VVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMT----NVVLGGIYAIRFATGAT  233 (239)
Q Consensus       158 ~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~----~~~~~g~~~lR~~~~~~  233 (239)
                      ++ +..+.||..++.+                       ..++.++.+.|..+..+|+.    +|+.+|.-.||++++-.
T Consensus       450 Vi-~~pSHIiPv~vgd-----------------------a~l~~~~sd~Li~~h~iYvQaINyPTV~rG~E~LRiaPTP~  505 (570)
T KOG1360|consen  450 VI-PNPSHIIPVRVGD-----------------------AALAKQASDILISKHNIYVQAINYPTVARGTERLRIAPTPH  505 (570)
T ss_pred             cc-CCCcceeeeeccC-----------------------HHHHHHHHHHHHHhcCeEEEeccCCcccccceeeecCCCCC
Confidence            77 4457899999876                       46677888888888887764    46778999999998777


Q ss_pred             CCC
Q 048438          234 LTE  236 (239)
Q Consensus       234 ~t~  236 (239)
                      +|.
T Consensus       506 HT~  508 (570)
T KOG1360|consen  506 HTP  508 (570)
T ss_pred             CCH
Confidence            653

>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

Probab=99.30  E-value=1e-11  Score=94.90  Aligned_cols=81  Identities=30%  Similarity=0.298  Sum_probs=67.4

Q ss_pred             CCccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccce
Q 048438            2 GLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCC   81 (239)
Q Consensus         2 g~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g   81 (239)
                      +..|.+++.++.++.+|...|+++|.++|+++|+++|+|+||+++........  ... .++|+++.++|||+++ .++|
T Consensus        90 ~~~~~~v~~~~~~~~~g~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~-~~~d~~~~s~~K~~~~-~~~G  165 (170)
T cd01494          90 KPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPAPGVL--IPE-GGADVVTFSLHKNLGG-EGGG  165 (170)
T ss_pred             cCceEEEEEecCcCCCCeEcCHHHHHHHHHHcCCEEEEecccccccccccccc--ccc-ccCCEEEEEcccccCC-CceE
Confidence            35678899999999999999999999999999999999999998877652211  111 3599999999999987 7899


Q ss_pred             EEEee
Q 048438           82 CLWAT   86 (239)
Q Consensus        82 ~l~~~   86 (239)
                      +++++
T Consensus       166 ~l~~~  170 (170)
T cd01494         166 VVIVK  170 (170)
T ss_pred             EEEeC
Confidence            99874

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis

>COG3844 Kynureninase [Amino acid transport and metabolism]

Probab=99.30  E-value=1e-10  Score=96.22  Aligned_cols=195  Identities=12%  Similarity=0.061  Sum_probs=131.9

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCC-CcccceEE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFF-ATLDCCCL   83 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~-~P~g~g~l   83 (239)
                      ..+|+.++...-||...++.+|.+++|++|+.+.-|=||++|+++.+     +... ++|+-+.+.||.|. +|.+.+++
T Consensus       167 ~AvV~L~~V~y~TGql~dm~aiT~~AH~~galv~wDLAHsaGavp~~-----Lh~~-gaDfaigcsyKYLNgGPGapa~l  240 (407)
T COG3844         167 VAVVLLSHVNYKTGQLLDMRAITALAHQHGALVGWDLAHSAGAVPVD-----LHAA-GADFAIGCSYKYLNGGPGAPAGL  240 (407)
T ss_pred             eEEEEeccccccccceeeHHHHHHHHHhcCceEEeehhcccCCccee-----eccc-CCCeeeeeeceeccCCCCCceeE
Confidence            35788899999999999999999999999999999999999999987     4443 59999999999995 47778888


Q ss_pred             EeeCcccccccc---cCCCCccCC----CCcee-cCCCCC--------ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Q 048438           84 WATNPEYLKNKA---TESKPVVDY----KDWQI-TLSRSF--------RSLKLWFVIRNYGMENLRHFLRSHVNMARLFE  147 (239)
Q Consensus        84 ~~~~~~~l~~~~---~~~~~~~~~----~~~~~-~~~~~~--------~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~  147 (239)
                      |+.+. ..+...   +.+.+.-+.    ..|.. ++.++|        ...++-.+|...+.-++.+..++...|+.++.
T Consensus       241 ~v~~~-h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~aLDifa~~~i~~lR~kSlaLTd~fi  319 (407)
T COG3844         241 FVAPR-HRERSWPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDIFADVDITELRKKSLALTDYFI  319 (407)
T ss_pred             Eeccc-cccccccccccccCCCCcchhhhccCcCccccceeeCCcchhhhHHHhhhhhhhhhcCHHHHHHhhhHHHHHHH
Confidence            88432 111111   111110000    00111 122333        12334445655555578888889999999999


Q ss_pred             HHHhCC-C--CeEEEcCC----CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEE
Q 048438          148 RLVSGD-K--RFEVVFPC----HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVL  220 (239)
Q Consensus       148 ~~l~~~-~--g~~~~~~~----~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~  220 (239)
                      +.++.. +  ++++..|.    +-+-|+|..+..                      .    ++.+.|.++|.+-    ..
T Consensus       320 eLvEa~~~~~~l~l~tPr~~~~rGsqvS~~hp~~----------------------~----~V~qaLi~rGVig----D~  369 (407)
T COG3844         320 ELVEARCEYYGLTLVTPRAHEERGSQVSLYHPHG----------------------Y----QVMQALIDRGVIG----DF  369 (407)
T ss_pred             HHHHhccccCCcEEeccchhhhccceeeEecCcH----------------------H----HHHHHHHHcCccc----cc
Confidence            999764 2  67888763    456788888642                      1    4555677777652    13


Q ss_pred             CCEeEEEEEecCCCCC
Q 048438          221 GGIYAIRFATGATLTE  236 (239)
Q Consensus       221 ~g~~~lR~~~~~~~t~  236 (239)
                      +...++||.+.-..++
T Consensus       370 R~P~vlRfgftPlY~~  385 (407)
T COG3844         370 REPDVLRFGFTPLYVS  385 (407)
T ss_pred             cCCCeeeecCccceec
Confidence            3457889987755443

>PRK08249 cystathionine gamma-synthase; Provisional

Probab=99.30  E-value=1.1e-10  Score=102.04  Aligned_cols=150  Identities=19%  Similarity=0.279  Sum_probs=103.1

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc-ceEE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD-CCCL   83 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g-~g~l   83 (239)
                      +-+|++..-+|.+|.+.|+++|+++||++|++++||++|+.+....+     .. . ++|+++.|++|+++++.. .|.+
T Consensus       150 tklV~ie~p~NPtg~v~dl~~I~~la~~~gi~livD~t~a~~~~~~~-----l~-~-~~Divv~S~sK~l~g~~~~~gG~  222 (398)
T PRK08249        150 CDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVDNTFATPINQNP-----LA-L-GADLVIHSATKFLSGHADALGGV  222 (398)
T ss_pred             CeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCcCccccCCc-----hh-h-CCCEEeccCceecCCCCCceEEE
Confidence            45677778889999999999999999999999999999986533211     11 1 499999999999987653 2334


Q ss_pred             EeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE-cC-
Q 048438           84 WATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVV-FP-  161 (239)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~-~~-  161 (239)
                      ++.++++......          +....+........|.+++  +.+.+..++++..++++++.+.|++.|.++-+ .| 
T Consensus       223 vv~~~~l~~~l~~----------~~~~~g~~~s~~~a~l~l~--~l~tL~~R~~~~~~na~~la~~L~~~p~v~~V~yP~  290 (398)
T PRK08249        223 VCGSKELMEQVYH----------YREINGATMDPMSAYLILR--GMKTLKLRVRQQQESAMALAKYLQTHPKVEAVYYPG  290 (398)
T ss_pred             EECCHHHHHHHHH----------HHHhcCCCCCHHHHHHHHh--CcchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCC
Confidence            4444444332211          0111122334455555555  45677888899999999999999998887633 33 


Q ss_pred             ----C-----------CeeEEEEEEcC
Q 048438          162 ----C-----------HFAVVCFRVSP  173 (239)
Q Consensus       162 ----~-----------~~~iv~f~~~~  173 (239)
                          |           ..++++|.+++
T Consensus       291 l~~~~~~~~~~~~~~g~g~~~sf~~~~  317 (398)
T PRK08249        291 LETHPNHEIAKAQMRGFGGILSFVLKG  317 (398)
T ss_pred             CCCCccHHHHHhhCCCCCceEEEEEcC
Confidence                1           14699999974

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=99.29  E-value=5.9e-11  Score=103.89  Aligned_cols=150  Identities=15%  Similarity=0.215  Sum_probs=105.3

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ceE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCC   82 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~   82 (239)
                      +-+|++...+|.+|.+.|+++|+++||++|++++||++|+.+...-+     . .+ ++|+++.++||+++++..  .|+
T Consensus       156 tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a~~~~~~~-----~-~~-gaDivv~S~tK~l~g~g~~~gG~  228 (403)
T PRK07810        156 TQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFATPLLQRG-----L-PL-GADVVVYSGTKHIDGQGRVLGGA  228 (403)
T ss_pred             ceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCCccccCCh-----h-hc-CCcEEEccCCceecCCcCceeEE
Confidence            35677888899999999999999999999999999999986644222     1 11 499999999999987643  466


Q ss_pred             EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc-C
Q 048438           83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF-P  161 (239)
Q Consensus        83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~-~  161 (239)
                      ++.++ +.+.....         .+....+........|..++  +.+.+..++++..+++.++.+.|++.|+++-+. |
T Consensus       229 v~~~~-~~~~~~l~---------~~~~~~g~~~s~~~a~l~l~--~L~tl~~R~~~~~~~a~~~a~~L~~~p~v~~V~yP  296 (403)
T PRK07810        229 ILGDR-EYIDGPVQ---------KLMRHTGPALSAFNAWVLLK--GLETLALRVRHSNASALRIAEFLEGHPAVRWVRYP  296 (403)
T ss_pred             EEeCh-HHHHHHHH---------HHHHHhCCCCCHHHHHHHHh--ccCcHHHHHHHHHHHHHHHHHHHhcCCCccEEECC
Confidence            65543 33321100         00001122344555665555  456788999999999999999999998876433 2


Q ss_pred             -----C-----------CeeEEEEEEcC
Q 048438          162 -----C-----------HFAVVCFRVSP  173 (239)
Q Consensus       162 -----~-----------~~~iv~f~~~~  173 (239)
                           |           ..++++|.+++
T Consensus       297 ~l~~~p~~~~~~~~~~g~g~~~s~~l~~  324 (403)
T PRK07810        297 FLPSHPQYDLAKRQMSGGGTVVTFELDA  324 (403)
T ss_pred             CCCCCccHHHHHhhCCCCceEEEEEEcC
Confidence                 1           24699999975

>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.29  E-value=1.7e-10  Score=101.60  Aligned_cols=160  Identities=13%  Similarity=0.192  Sum_probs=104.6

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc-ceEE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD-CCCL   83 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g-~g~l   83 (239)
                      +-+|++...+|.+|.+.|+++|.++|+++|++++||++|+.+...-+     +. + ++|+++.|+|||++++.. .|.+
T Consensus       144 tklV~lesp~NPtG~v~dl~~I~~la~~~~i~vVvD~a~a~~~~~~p-----~~-~-gaDivv~S~tK~l~G~g~~~gG~  216 (425)
T PRK06084        144 TKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVDNTVATPVLCRP-----FE-H-GADIVVHSLTKYIGGHGTSIGGI  216 (425)
T ss_pred             CcEEEEeCCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccCCh-----hh-c-CCCEEEECchhcccccccceeEE
Confidence            45677788889999999999999999999999999999987654222     21 1 499999999999987743 2334


Q ss_pred             EeeCccc--ccc--cc---cC-CCCccCC--CC-c-------------eecCCCCCChHHHHHHHHHhCHHHHHHHHHHH
Q 048438           84 WATNPEY--LKN--KA---TE-SKPVVDY--KD-W-------------QITLSRSFRSLKLWFVIRNYGMENLRHFLRSH  139 (239)
Q Consensus        84 ~~~~~~~--l~~--~~---~~-~~~~~~~--~~-~-------------~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~  139 (239)
                      ++.++.+  ...  ..   .. ...+.+.  .. .             ....+.+......|..++  |.+.+..++++.
T Consensus       217 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~l~~~~a~l~lr--gl~tl~~R~~~~  294 (425)
T PRK06084        217 VVDSGKFPWAEHKERFALLNTPDPSYHGVTYTEAFGPAAFIGRCRVVPLRNMGAALSPFNAFLILQ--GLETLALRMERH  294 (425)
T ss_pred             EEeCCccchhhccccccccccCCcccccchhhhhcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHc--CcCcHHHHHHHH
Confidence            4432211  000  00   00 0000000  00 0             001123344455665555  567888999999


Q ss_pred             HHHHHHHHHHHhCCCCeEEE-cC---------------C--CeeEEEEEEcC
Q 048438          140 VNMARLFERLVSGDKRFEVV-FP---------------C--HFAVVCFRVSP  173 (239)
Q Consensus       140 ~~la~~l~~~l~~~~g~~~~-~~---------------~--~~~iv~f~~~~  173 (239)
                      .+.+.++.+.|++.|+++-+ .|               +  ..++++|.+++
T Consensus       295 ~~na~~la~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~~gg~~s~~~~~  346 (425)
T PRK06084        295 TENALKVARYLQQHPQVAWVKYAGLPDHPEHELARRYMGGKPASILSFGIKG  346 (425)
T ss_pred             HHHHHHHHHHHHhCCCccEEECCCCCCcccHHHHHHhCCCCcceEEEEEecC
Confidence            99999999999999987633 32               1  14599999975

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=99.29  E-value=2.7e-11  Score=105.45  Aligned_cols=150  Identities=21%  Similarity=0.292  Sum_probs=103.9

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ceE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCC   82 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~   82 (239)
                      +-+|++...+|.+|.+.|+++|+++||++|++++||++|+.+...-+     +.  .++|+++.|+||++++|.+  .|+
T Consensus       138 tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~a~~~~~~~-----l~--~GaDivv~S~sK~l~g~~d~~gG~  210 (385)
T PRK08574        138 TKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFATPLLYRP-----LR--HGADFVVHSLTKYIAGHNDVVGGV  210 (385)
T ss_pred             ceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccCCh-----hh--hCCcEEEeeCceeecCCCCceeEE
Confidence            45677788889999999999999999999999999999987643221     11  1489999999999998865  354


Q ss_pred             EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE-EEcC
Q 048438           83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE-VVFP  161 (239)
Q Consensus        83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~-~~~~  161 (239)
                      +++.+++.......          +....|.....+..|.+++  +.+.+..++++..+++.++.+.|++.|.++ |..|
T Consensus       211 vi~~~~~~~~~~~~----------~~~~~g~~~~p~~a~l~l~--~l~tL~~R~~~~~~na~~la~~L~~~p~v~~V~yP  278 (385)
T PRK08574        211 AVAWSGEFLEELWE----------WRRRLGTIMQPFEAYLVLR--GLKTLEVRFERQCRNAMAIAEFLSEHPKVAEVYYP  278 (385)
T ss_pred             EEECcHHHHHHHHH----------HHHhcCCCCCHHHHHHHHc--ccCcHHHHHHHHHHHHHHHHHHHHcCCCcCEEECC
Confidence            55544443322210          0001122233444555554  456678899999999999999999988875 3332


Q ss_pred             -----C-------------CeeEEEEEEcC
Q 048438          162 -----C-------------HFAVVCFRVSP  173 (239)
Q Consensus       162 -----~-------------~~~iv~f~~~~  173 (239)
                           |             ..++++|.+++
T Consensus       279 ~l~~~~~~~~~~~~~~~~g~g~~~s~~l~~  308 (385)
T PRK08574        279 GLPSDPYHGVAKRLFGKDLYGGVVSFRVKG  308 (385)
T ss_pred             CCCCCchHHHHHHhCCCCCcceEEEEEeCC
Confidence                 0             13589999974

>PRK06460 hypothetical protein; Provisional

Probab=99.26  E-value=2.5e-10  Score=99.13  Aligned_cols=149  Identities=19%  Similarity=0.212  Sum_probs=101.5

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ceE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCC   82 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~   82 (239)
                      +-+|++...+|.+|.+.|+++|+++|+++|++++||.+|+.+.. ..   . +.  .++|+++.++||+++++.+  .|+
T Consensus       131 tklV~l~sp~NPtG~v~d~~~I~~la~~~g~~vivDea~~~~~~-~~---~-l~--~~~divv~S~sK~l~G~~~~~~G~  203 (376)
T PRK06460        131 YDVVFVENITNPLLRVVDITELSKVCKENGSILIVDATFSTPIN-QK---P-LE--LGADIVVHSASKFLAGHNDVIAGL  203 (376)
T ss_pred             ceEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcCcccc-CC---h-hh--cCCCEEEeecceeccCCCCceEEE
Confidence            45788888899999999999999999999999999999975421 11   1 11  1389999999999876643  555


Q ss_pred             EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE-cC
Q 048438           83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVV-FP  161 (239)
Q Consensus        83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~-~~  161 (239)
                      ++ .+++.......          .....+....+...|.+++  +.+.++.++++..++++++.+.|++.|.++-+ .|
T Consensus       204 ~~-~~~~l~~~l~~----------~~~~~g~~~~~~~a~~~l~--~~~~l~~r~~~~~~n~~~l~~~L~~~p~v~~v~yp  270 (376)
T PRK06460        204 AA-GYGKLLNVIDQ----------MRRTLGTSLDPHAAYLTLR--GIKTLKIRMDVINRNAEQIAEFLEGHPKVVKVYYP  270 (376)
T ss_pred             Ee-cCHHHHHHHHH----------HHHhcCCCCCHHHHHHHHh--chhhHHHHHHHHHHHHHHHHHHHHcCCCccEEECC
Confidence            54 34443322210          0000111122334455444  45677888999999999999999998887533 33


Q ss_pred             -----C-----------CeeEEEEEEcC
Q 048438          162 -----C-----------HFAVVCFRVSP  173 (239)
Q Consensus       162 -----~-----------~~~iv~f~~~~  173 (239)
                           |           ..++++|.+++
T Consensus       271 ~l~~~p~~~~~~~~~~g~gg~~s~~~~~  298 (376)
T PRK06460        271 GLKSHVDYEIARRVLKGFGGVLSFEVNG  298 (376)
T ss_pred             CCCCCccHHHHHhhCCCCceEEEEEEcC
Confidence                 1           24799999974

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=99.26  E-value=1.3e-10  Score=100.68  Aligned_cols=150  Identities=21%  Similarity=0.317  Sum_probs=102.8

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ceE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCC   82 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~   82 (239)
                      +-+|++..-+|.+|.+.++++|+++|+++|+++++|.+++.+....+     ..  .++|+++.|++|+++++.+  .|+
T Consensus       137 tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~~~~~~p-----~~--~g~di~i~S~sK~~~g~~d~~~G~  209 (366)
T PRK08247        137 TKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPVLQRP-----LE--EGADIVIHSATKYLGGHNDVLAGL  209 (366)
T ss_pred             ceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccccCc-----hh--cCCcEEEeecceeccCCCceeeeE
Confidence            45677777788899999999999999999999999999975543222     11  1499999999999988754  455


Q ss_pred             EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc-C
Q 048438           83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF-P  161 (239)
Q Consensus        83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~-~  161 (239)
                      +..+++.+......          .....+........|..++  +.+.+..++++..+.++.+.+.|++.|++..+. |
T Consensus       210 iv~~~~~l~~~~~~----------~~~~~g~~~s~~~a~l~~~--~l~tl~~r~~~~~~~a~~l~~~L~~~p~v~~v~~P  277 (366)
T PRK08247        210 VVAKGQELCERLAY----------YQNAAGAVLSPFDSWLLIR--GMKTLALRMRQHEENAKAIAAFLNEQPGVTDVLYP  277 (366)
T ss_pred             EecChHHHHHHHHH----------HHHhcCCCCChHHHHHHHh--ccCcHHHHHHHHHHHHHHHHHHHHhCCCeeEEecC
Confidence            54433333222210          0000111122334455444  344666788888999999999999999987544 4


Q ss_pred             CCeeEEEEEEcC
Q 048438          162 CHFAVVCFRVSP  173 (239)
Q Consensus       162 ~~~~iv~f~~~~  173 (239)
                      +..++++|.+++
T Consensus       278 ~~gg~~sf~~~~  289 (366)
T PRK08247        278 GRGGMLSFRLQD  289 (366)
T ss_pred             CcCcEEEEEECC
Confidence            478899998853

>PRK06434 cystathionine gamma-lyase; Validated

Probab=99.24  E-value=1.4e-10  Score=100.64  Aligned_cols=148  Identities=20%  Similarity=0.261  Sum_probs=103.0

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ceE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCC   82 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~   82 (239)
                      +-+|...+-+|.++.+.|+++|+++||+++  ++||++++.+...-+     + +. ++|++++|+||++.++.+  .|+
T Consensus       149 tklv~~e~~snpt~~v~Di~~I~~la~~~~--lvVD~t~~s~~~~~p-----l-~~-gaDivv~S~tK~i~G~~d~~gG~  219 (384)
T PRK06434        149 YDLIYAESITNPTLKVPDIKNVSSFCHEND--VIVDATFASPYNQNP-----L-DL-GADVVIHSATKYISGHSDVVMGV  219 (384)
T ss_pred             eeEEEEEcCCCCCceeecHHHHHHHHHHcC--eEEECCCCCcccCCc-----h-hc-CCCEEEeecccccCCCCCceEEE
Confidence            346677788889999999999999999998  568999976543212     2 11 499999999999998875  566


Q ss_pred             EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE-EEcC
Q 048438           83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE-VVFP  161 (239)
Q Consensus        83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~-~~~~  161 (239)
                      +..++++.......          +....|.....+..|..++  |.+.+..++++..+++..+.+.|++.|.++ |..|
T Consensus       220 vv~~~~~~~~~~~~----------~~~~~G~~~~~~~A~l~~~--gL~tL~~R~~r~~~~a~~~a~~L~~~p~v~~V~yP  287 (384)
T PRK06434        220 AGTNNKSIFNNLVE----------RRKTLGSNPDPIQAYLALR--GLKTLGLRMEKHNKNGMELARFLRDSKKISNVYYP  287 (384)
T ss_pred             EecCcHHHHHHHHH----------HHHhcCCCCCHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECC
Confidence            65544432221110          0001122334455565554  556788999999999999999999998875 4433


Q ss_pred             C----------CeeEEEEEEcC
Q 048438          162 C----------HFAVVCFRVSP  173 (239)
Q Consensus       162 ~----------~~~iv~f~~~~  173 (239)
                      .          ..++++|.+++
T Consensus       288 gl~~~~~~~~g~g~~~sf~l~~  309 (384)
T PRK06434        288 DTEIGKKVLRGFGGMLSFELRS  309 (384)
T ss_pred             ChHHHHHhcCCCCceEEEEECC
Confidence            2          25699999964

>KOG0630 consensus Predicted pyridoxal-dependent decarboxylase [Amino acid transport and metabolism]

Probab=99.24  E-value=2.8e-11  Score=104.24  Aligned_cols=150  Identities=21%  Similarity=0.319  Sum_probs=115.5

Q ss_pred             CCCccEEEEEecCCCCcccccChhHHHHHHHHhC-CEEEEecccccccccCcccccccCC-CCCcceEEEcCcccCCCcc
Q 048438            1 AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFG-IWVHVDAAYAGSACIFPEFRHFIDG-VEGADSFSLNAHKWFFATL   78 (239)
Q Consensus         1 ~g~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~g-i~lhvD~A~~~~~~~~~~~~~~~~~-~~~~Ds~~~~~hK~l~~P~   78 (239)
                      +|++|+++++..|++..|..|.|-+|.++|++++ +|+|.-| |+..++.+.+....+-. .+..||++.+.--||+.|.
T Consensus       289 agkkPLilia~iGasi~GqnDmi~kildi~eahakfWLHasG-haiAALt~aepnnil~HV~eqldSMal~ialWLGiPS  367 (838)
T KOG0630|consen  289 AGKKPLILIADIGASICGQNDMILKILDICEAHAKFWLHASG-HAIAALTCAEPNNILGHVEEQLDSMALNIALWLGIPS  367 (838)
T ss_pred             CCCCCeEEEEeccchhhcchHHHHHHHHHHHHhhheeEeecc-chhhheeecCcccchhHHHHHHhhccchhHHHhCCCC
Confidence            5899999999999999999999999999999997 9999988 55666666543321111 2369999999999999997


Q ss_pred             cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 048438           79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEV  158 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~  158 (239)
                      ..-+++- +|  +....      .+...-.+-..++..++++|.+++++|.+.+.+++.....+++.+.+.+.+.+++++
T Consensus       368 aPiV~LH-RP--leg~a------aSafesdpi~rekLdaLp~Wta~q~LggKaIadmienAFll~kilfe~aSa~~eiem  438 (838)
T KOG0630|consen  368 APIVLLH-RP--LEGSA------ASAFESDPILREKLDALPLWTALQALGGKAIADMIENAFLLCKILFEGASACEEIEM  438 (838)
T ss_pred             CceEEee-cc--ccccc------chhcccChHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhcCCceeE
Confidence            6544443 22  11110      000011122356788999999999999999999999999999999999999999998


Q ss_pred             Ec
Q 048438          159 VF  160 (239)
Q Consensus       159 ~~  160 (239)
                      ++
T Consensus       439 ig  440 (838)
T KOG0630|consen  439 IG  440 (838)
T ss_pred             ec
Confidence            86

>PRK05939 hypothetical protein; Provisional

Probab=99.20  E-value=7.2e-10  Score=96.84  Aligned_cols=160  Identities=13%  Similarity=0.105  Sum_probs=102.9

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc-ceE
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD-CCC   82 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g-~g~   82 (239)
                      .+-+|++.+.+|.+|.+.|+++|+++||++|++++||++|+.+.. ++     ...+ ++|+++.++||+++++.. .|.
T Consensus       131 ~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~a~~~~-~~-----~~~~-gaDivv~S~sK~~~g~g~~igg  203 (397)
T PRK05939        131 NTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMTSPWL-FR-----PKDV-GASLVINSLSKYIAGHGNALGG  203 (397)
T ss_pred             CCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCcccccc-cC-----cccc-CCEEEEecCeecccCCCCeEEE
Confidence            356778888999999999999999999999999999999976633 22     1112 499999999999987643 122


Q ss_pred             EEeeCcc--cccccccCCCCccCCC--Cce---------ecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Q 048438           83 LWATNPE--YLKNKATESKPVVDYK--DWQ---------ITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERL  149 (239)
Q Consensus        83 l~~~~~~--~l~~~~~~~~~~~~~~--~~~---------~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~  149 (239)
                      .++.+..  +........ ...++.  .+.         ...|....+...|..++  |.+.+..|++++.+++..+.+.
T Consensus       204 ~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~r--gl~tl~~R~~~~~~na~~la~~  280 (397)
T PRK05939        204 AVTDTGLFDWSAYPNIFP-AYRKGDPQQWGLTQIRKKGLRDMGATLSSEAAHRIAI--GAETLALRVDRSCSNALALAQF  280 (397)
T ss_pred             EEecCcccccccccchhh-hhhccchhhHHHHHHHHHHHHhcCCCCCHHHHHHHHc--CcCcHHHHHHHHHHHHHHHHHH
Confidence            2332211  100000000 000000  000         01122334455565544  6778889999999999999999


Q ss_pred             HhCCCCeE-EEcCC----------------CeeEEEEEEcC
Q 048438          150 VSGDKRFE-VVFPC----------------HFAVVCFRVSP  173 (239)
Q Consensus       150 l~~~~g~~-~~~~~----------------~~~iv~f~~~~  173 (239)
                      |++.|.++ |..|.                ..++++|.+++
T Consensus       281 L~~~p~V~~V~yP~l~~~p~~~~~~~~~~g~g~l~sf~~~~  321 (397)
T PRK05939        281 LEAHPKVARVYYPGLASHPQHARATELFRHYGGLLSFELAD  321 (397)
T ss_pred             HHhCCCccEEECCCCCCCchHHHHHHhccCCceEEEEEeCC
Confidence            99988875 33331                24699999974

>PLN02242 methionine gamma-lyase

Probab=99.20  E-value=7.4e-10  Score=97.37  Aligned_cols=151  Identities=15%  Similarity=0.197  Sum_probs=100.9

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ceE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCC   82 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~   82 (239)
                      +-+|++..-+|.+|.+.|+++|+++||++|++++||.+|+...  .+     ...+ ++|+++.+++|+++++..  .|+
T Consensus       164 tklV~lesp~NPtG~v~dl~~I~~la~~~gi~livDea~~~~~--~~-----~~~~-g~divv~S~SK~l~g~g~~~gG~  235 (418)
T PLN02242        164 TKVLYFESISNPTLTVADIPELARIAHEKGVTVVVDNTFAPMV--LS-----PARL-GADVVVHSISKFISGGADIIAGA  235 (418)
T ss_pred             CEEEEEecCCCCCCcccCHHHHHHHHHHhCCEEEEECCCCccC--CC-----HHHc-CCcEEEEeCccccCCCCCceEEE
Confidence            5678888889999999999999999999999999999996432  22     1112 389999999999987754  355


Q ss_pred             EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcCC
Q 048438           83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPC  162 (239)
Q Consensus        83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~~  162 (239)
                      ++ .+++++.........      .....+....+...|..++  +...+..++++..+.++++.+.|++. ++++..|.
T Consensus       236 iv-~~~~li~~l~~~~~~------~~~~~g~~~~~~~A~l~~~--~l~tl~~r~~~~~~~a~~la~~L~~~-~~~V~yP~  305 (418)
T PLN02242        236 VC-GPAELVNSMMDLHHG------ALMLLGPTMNPKVAFELSE--RLPHLSLRMKEHCRRAMEYAKRMKEL-GLKVIYPG  305 (418)
T ss_pred             EE-cCHHHHHHHHHHhhh------hhhccCCCCCHHHHHHHHc--CCCcHHHHHHHHHHHHHHHHHHHHhC-CCEEECCC
Confidence            55 344443332110000      0001122233334444433  44466778888999999999999998 67877541


Q ss_pred             -------------------CeeEEEEEEcC
Q 048438          163 -------------------HFAVVCFRVSP  173 (239)
Q Consensus       163 -------------------~~~iv~f~~~~  173 (239)
                                         ..++++|.+.+
T Consensus       306 l~~~p~~~~~~~~~~~~~g~g~~~sf~l~~  335 (418)
T PLN02242        306 LEDHPQHALLKSMANKGYGFGGLLCLDMDT  335 (418)
T ss_pred             CCCCccHHHHHHhcccCCCceeEEEEEECC
Confidence                               13689999853

>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []

Probab=99.19  E-value=2.4e-10  Score=98.72  Aligned_cols=156  Identities=13%  Similarity=0.141  Sum_probs=94.3

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL   83 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l   83 (239)
                      +|-+|++  |.+..-...|++++.+||++.|+++++|+||-+|.+....+..-+   +.||+++++.||.|.+|.| |++
T Consensus       169 kPklIi~--G~S~y~~~~d~~~~reIad~vga~l~~D~sH~~GLIa~g~~~~P~---~~ADvvt~sThKtl~GPrg-giI  242 (399)
T PF00464_consen  169 KPKLIIC--GASSYPRPIDFKRFREIADEVGAYLMADISHIAGLIAGGLFPNPF---PYADVVTGSTHKTLRGPRG-GII  242 (399)
T ss_dssp             --SEEEE--E-SSTSS---HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS--GC---CTSSEEEEESSGGG-SSS--EEE
T ss_pred             CCCEEEE--CchhccCccCHHHHHHHHHhcCcEEEecccccccceehheecCcc---ccceEEEeeccccccccCc-eEE
Confidence            3444443  445566678899999999999999999999988877554332223   3599999999999999997 666


Q ss_pred             EeeC-------------cccccccccCCCCccCCCCceecCCCCC-ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Q 048438           84 WATN-------------PEYLKNKATESKPVVDYKDWQITLSRSF-RSLKLWFVIRNYGMENLRHFLRSHVNMARLFERL  149 (239)
Q Consensus        84 ~~~~-------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~  149 (239)
                      +.++             +++-......   .+   + ..+++-.. ..+++..+++......+++..++..++|+.|.+.
T Consensus       243 ~~~~~~~~~~~~~~~~~~~l~~~I~~a---vf---P-~~qg~~h~~~iaalAval~ea~~~~fk~Ya~qVv~NAk~La~~  315 (399)
T PF00464_consen  243 LTNKGSKNVDKKGKEIDEELAEKIDSA---VF---P-GLQGGPHMHRIAALAVALKEALSPEFKEYAKQVVKNAKALAEA  315 (399)
T ss_dssp             EES-SEEEE-TTS-EEEHHHHHHHHHH---HT---T-TT-SS--HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEcCCccccCCcccccHHHHHHHhccc---cC---C-CcccCcchhHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH
Confidence            6651             1111111100   00   0 01111111 2244555666554556788999999999999999


Q ss_pred             HhCCCCeEEEcC-CCeeEEEEEEcC
Q 048438          150 VSGDKRFEVVFP-CHFAVVCFRVSP  173 (239)
Q Consensus       150 l~~~~g~~~~~~-~~~~iv~f~~~~  173 (239)
                      |.+. |++++.. .++.+|.+.+.+
T Consensus       316 L~~~-G~~v~~ggTd~H~vlvd~~~  339 (399)
T PF00464_consen  316 LQER-GFKVVTGGTDNHQVLVDLRS  339 (399)
T ss_dssp             HHHT-T-EEGGGS-SSSEEEEEGGG
T ss_pred             HhhC-CcEEEECCCCCCeEEEEecc
Confidence            9996 9999863 567788888765

The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....

>PRK07503 methionine gamma-lyase; Provisional

Probab=99.18  E-value=2.8e-10  Score=99.65  Aligned_cols=151  Identities=15%  Similarity=0.201  Sum_probs=103.8

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ceE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCC   82 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~   82 (239)
                      +-+|++...+|.+|.+.|+++|+++|+++|+++++|++|+.+....+     + +. ++|+++.|++|+++++.+  .|+
T Consensus       151 tklV~le~p~NPtG~~~di~~I~~la~~~gi~lIvD~a~a~~~~~~~-----l-~~-g~Di~v~S~tK~l~g~gd~~gG~  223 (403)
T PRK07503        151 TRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTYCTPYLQRP-----L-EL-GADLVVHSATKYLGGHGDITAGL  223 (403)
T ss_pred             CcEEEEeCCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCCc-----h-hh-CCCEEEccccccccCCCceeEEE
Confidence            45667777889999999999999999999999999999986543221     1 12 489999999999987754  566


Q ss_pred             EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc-C
Q 048438           83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF-P  161 (239)
Q Consensus        83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~-~  161 (239)
                      ++ .++++.......        ......+-+...+..|..++  +.+.+..++++..++++++.+.|++.|.++.+. |
T Consensus       224 v~-~~~~l~~~l~~~--------~~~~~~g~~~s~~~a~l~l~--~L~tl~~r~~~~~~na~~~a~~L~~~p~v~~V~~P  292 (403)
T PRK07503        224 VV-GGKALADRIRLE--------GLKDMTGAVMSPFDAFLLMR--GLKTLALRMDRHCASAQAVAEWLARHPAVELVHYP  292 (403)
T ss_pred             EE-cCHHHHHHHHhh--------hHHhCcCCCCCHHHHHHHHc--CcchHHHHHHHHHHHHHHHHHHHHhCCCccEEECC
Confidence            65 455443332100        00001123334455555555  456777888888899999999999988876442 2


Q ss_pred             -----C-----------CeeEEEEEEcC
Q 048438          162 -----C-----------HFAVVCFRVSP  173 (239)
Q Consensus       162 -----~-----------~~~iv~f~~~~  173 (239)
                           +           ..++++|.+++
T Consensus       293 ~l~~~~~~~~~~~~~~~~g~~~s~~~~~  320 (403)
T PRK07503        293 GLPSFAQHALAQRQMALPGGMIAFELKG  320 (403)
T ss_pred             CCCCCccHHHHHHhCCCCCceEEEEECC
Confidence                 1           13588888864

>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase

Probab=99.18  E-value=1.6e-10  Score=100.73  Aligned_cols=160  Identities=16%  Similarity=0.164  Sum_probs=97.0

Q ss_pred             ccEEEEEecCCCCcccc---cChhHHHHHHHHhCCEEEEecccccc-cccCcc----ccc-cc----CC-CCCcceEEEc
Q 048438            4 IPLFLCATIGTTAITAV---DPLKPLCDVAKQFGIWVHVDAAYAGS-ACIFPE----FRH-FI----DG-VEGADSFSLN   69 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i---~pl~~i~~i~~~~gi~lhvD~A~~~~-~~~~~~----~~~-~~----~~-~~~~Ds~~~~   69 (239)
                      .|++.+....+...|..   .++++|.++|++||+++|.|||+..+ +..+.+    +.. ..    .. ...+|++++|
T Consensus       171 ~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR~~gNA~~I~~re~g~~~~~i~ei~~e~~~~aD~~~~S  250 (450)
T TIGR02618       171 IPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYDATRCVENAYFIKEREQGYEDKSIAEILKEMMSYADGCTMS  250 (450)
T ss_pred             cCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccchhhChhhhhcccccccCCCHHHHHHHHhccCcEEEEe
Confidence            34333333333334776   56899999999999999999999883 343211    110 01    11 2359999999


Q ss_pred             CcccCCCcccceEEEeeCcccccccccC---CCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Q 048438           70 AHKWFFATLDCCCLWATNPEYLKNKATE---SKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLF  146 (239)
Q Consensus        70 ~hK~l~~P~g~g~l~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l  146 (239)
                      +||-.++|.| |++..+++++.......   ..+...   +..-.+|...+  +..+++..-.   +...++....+++|
T Consensus       251 ~~Kd~~~~~G-G~l~~~d~~l~~k~r~~~~~~eG~~t---yGgla~r~~~a--la~gL~e~~~---~~y~~~r~~~a~~L  321 (450)
T TIGR02618       251 GKKDCLVNIG-GFLCMNDDEMFQSAKELVVVFEGMPS---YGGLAGRDMEA--MAIGIREAVD---YEYIEHRVKQVRYL  321 (450)
T ss_pred             eccCCCCCCc-eEEEeCCHHHHHHHHHHhhhcCCccc---cCchhhhhHHH--HHHHHHHhhh---HHHHHHHHHHHHHH
Confidence            9999999985 55665776555443210   001111   11111122222  2223333211   24556666779999


Q ss_pred             HHHHhCCCCeEEEcCCCeeEEEEEEcC
Q 048438          147 ERLVSGDKRFEVVFPCHFAVVCFRVSP  173 (239)
Q Consensus       147 ~~~l~~~~g~~~~~~~~~~iv~f~~~~  173 (239)
                      .+.|.+. |+.++.|+..++|.+....
T Consensus       322 a~~L~~~-Gvpv~~p~ggh~V~vda~~  347 (450)
T TIGR02618       322 GDKLKAA-GVPIVEPVGGHAVFLDARR  347 (450)
T ss_pred             HHHHHHC-CCcccCCCCcceEEEEhHH
Confidence            9999997 9999888889999887653

This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)

>PRK07050 cystathionine beta-lyase; Provisional

Probab=99.17  E-value=1.9e-10  Score=100.49  Aligned_cols=150  Identities=14%  Similarity=0.139  Sum_probs=103.9

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ceE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCC   82 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~   82 (239)
                      +-+|++...+|.+|.+.|+++|+++|+++|+++++|+||+.+...-+    ...   ++|+++.+++|++++..+  .|.
T Consensus       151 tklV~le~p~Np~~~~~di~~I~~ia~~~gi~livD~a~a~~~~~~~----l~~---GaDi~v~S~tK~~~g~~~~~gG~  223 (394)
T PRK07050        151 TRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNTYSAGLAFKP----FEH---GVDISVQALTKYQSGGSDVLMGA  223 (394)
T ss_pred             CeEEEEECCCCCCccHhhHHHHHHHHHHcCCEEEEECCcccccccCH----HHc---CCeEEEEECCceecCCCCeeEEE
Confidence            45777777888999999999999999999999999999988754222    111   489999999999987654  455


Q ss_pred             EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcCC
Q 048438           83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPC  162 (239)
Q Consensus        83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~~  162 (239)
                      ++++++++......          +....|--..+...|.+++  |.+.+..+++++++.+.++.+.|++.|++.-+..|
T Consensus       224 v~~~~~~~~~~~~~----------~~~~~G~~~~~~~a~l~lr--~l~tl~~Rl~~~~~~a~~la~~L~~~p~v~~v~~p  291 (394)
T PRK07050        224 TITADAELHAKLKL----------ARMRLGIGVSADDCSLVLR--GLPSLQVRLAAHDRSALEVAEWLKARPEIATVLHP  291 (394)
T ss_pred             EEECCHHHHHHHHH----------HHHhcCCCCCHHHHHHHHc--CCCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECC
Confidence            66655544332211          0101121223444565555  34566778999999999999999998887644311


Q ss_pred             -----------------CeeEEEEEEcC
Q 048438          163 -----------------HFAVVCFRVSP  173 (239)
Q Consensus       163 -----------------~~~iv~f~~~~  173 (239)
                                       ..++++|.+.+
T Consensus       292 ~l~~~p~~~~~~~~~~~~g~~~s~~l~~  319 (394)
T PRK07050        292 ALPDCPGHAFWMRDFTGAGGLFSVVFDE  319 (394)
T ss_pred             CCCCCccHHHHHHhCCCCceEEEEEECC
Confidence                             13588888865

>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=99.16  E-value=4e-10  Score=95.05  Aligned_cols=156  Identities=14%  Similarity=0.120  Sum_probs=108.0

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL   83 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l   83 (239)
                      +|-+|  .+|.+..-...|++++.+||++.|++|.+|.||-+|.+..-.+.   .-++.||+++.+.||.|.+|.| |++
T Consensus       166 kPK~i--i~G~SaY~r~id~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p---~P~~~AdvVTtTTHKTlrGPrG-G~I  239 (413)
T COG0112         166 KPKLI--IAGGSAYSRPIDFKRFREIADEVGAYLMVDMAHVAGLIAGGVHP---NPLPHADVVTTTTHKTLRGPRG-GII  239 (413)
T ss_pred             CCCEE--EECccccccccCHHHHHHHHHHhCceEEehHHHHHHHHhcccCC---CCCCccceEeCCcccCCCCCCc-eEE
Confidence            35544  35777777889999999999999999999999988876554332   2344599999999999999997 566


Q ss_pred             EeeCcccccccccCCCCccCCCCceecCCCCC-ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcC-
Q 048438           84 WATNPEYLKNKATESKPVVDYKDWQITLSRSF-RSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFP-  161 (239)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~-  161 (239)
                      +.++.++.......   .   . ...+++-.. ...+...+++....-++++..++..++|+.|.+.|.+. |++++.. 
T Consensus       240 l~~~eel~kkin~a---V---F-Pg~qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~-G~~vvsGg  311 (413)
T COG0112         240 LTNDEELAKKINSA---V---F-PGLQGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKER-GFKVVSGG  311 (413)
T ss_pred             EeccHHHHHHhhhh---c---C-CccCCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHc-CCeEecCC
Confidence            66554444433210   0   0 122222221 22333445555555688888999999999999999985 9999863 


Q ss_pred             CCeeEEEEEEcC
Q 048438          162 CHFAVVCFRVSP  173 (239)
Q Consensus       162 ~~~~iv~f~~~~  173 (239)
                      .+..++.+.+.+
T Consensus       312 TdnHl~lVDl~~  323 (413)
T COG0112         312 TDNHLVLVDLRS  323 (413)
T ss_pred             ccceEEEEEccc
Confidence            455666666653

>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional

Probab=99.14  E-value=1.4e-09  Score=94.63  Aligned_cols=153  Identities=16%  Similarity=0.102  Sum_probs=91.6

Q ss_pred             CCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEEeeCccccccc
Q 048438           15 TAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWATNPEYLKNK   94 (239)
Q Consensus        15 t~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~l~~~   94 (239)
                      +.+|...|+++|.++|+++|+++++|+||+.|.......   +... ++|+++++.+|++.++.| |+++..+++.....
T Consensus       129 ~~~G~~~d~~~i~~~a~~~gi~vi~D~a~a~g~~~~~~~---~g~~-g~~~~Sf~~~K~l~~g~G-G~v~~~~~~~~~~~  203 (379)
T PRK11658        129 HYAGAPADLDAIRAIGERYGIPVIEDAAHAVGTYYKGRH---IGAR-GTAIFSFHAIKNITCAEG-GLVVTDDDELADRL  203 (379)
T ss_pred             CCCCCcCCHHHHHHHHHHcCCeEEEECCCccCCeECCee---cCCC-CCEEEeCCCCCcCcccCc-eEEEECCHHHHHHH
Confidence            358999999999999999999999999999775533211   2222 368899999999876543 44444444332211


Q ss_pred             c--cCCCCccCCC---------Cc-eecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcCC
Q 048438           95 A--TESKPVVDYK---------DW-QITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPC  162 (239)
Q Consensus        95 ~--~~~~~~~~~~---------~~-~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~~  162 (239)
                      .  ...+...+..         .+ ....|..++...+-+++.....+++++..++..++++++.+.|++++...+..+.
T Consensus       204 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~~G~n~~~~~l~AAl~~~ql~~l~~~~~~r~~~a~~~~~~L~~~~~~~~~~~~  283 (379)
T PRK11658        204 RSLKFHGLGVDAFDRQTQGRAPQAEVLTPGYKYNLADINAAIALVQLAKLEALNARRREIAARYLQALADLPFQPLSLPA  283 (379)
T ss_pred             HHHHHcCCCcchhhhhcccCCCcceeeccccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCcCCC
Confidence            1  0001000000         00 0112323333344455555556788999999999999999999987543332221


Q ss_pred             C-----eeEEEEEEc
Q 048438          163 H-----FAVVCFRVS  172 (239)
Q Consensus       163 ~-----~~iv~f~~~  172 (239)
                      .     ..+.+++++
T Consensus       284 ~~~~~~~~~~~~~~~  298 (379)
T PRK11658        284 WPHQHAWHLFIIRVD  298 (379)
T ss_pred             CCCceeEEEEEEEEC
Confidence            1     235666664

>PRK05967 cystathionine beta-lyase; Provisional

Probab=99.14  E-value=9.6e-10  Score=95.64  Aligned_cols=149  Identities=17%  Similarity=0.204  Sum_probs=104.2

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ceE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCC   82 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~   82 (239)
                      +-+|.++.-+|.++.+.||++|+++||++|++++||++++.+...-+     ++ + ++|.++.|..|++.+..+  .|+
T Consensus       150 TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t~a~p~~~~p-----l~-~-GaDivv~S~tKy~~Gh~d~~~G~  222 (395)
T PRK05967        150 TKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTWATPLYFRP-----LD-F-GVDISIHAATKYPSGHSDILLGT  222 (395)
T ss_pred             ceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECCccCceecCh-----hH-c-CCCEEEEecccccCCCCCeeEEE
Confidence            56788888889999999999999999999999999999986533222     11 2 499999999999665322  444


Q ss_pred             EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE-EEcC
Q 048438           83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE-VVFP  161 (239)
Q Consensus        83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~-~~~~  161 (239)
                      +. .++........          +....|....+...|..++  |.+.+.-|++++.+.+..+.+.|++.|.++ |..|
T Consensus       223 v~-~~~~~~~~l~~----------~~~~~G~~~~p~da~l~~r--gl~Tl~lR~~~~~~na~~lA~~L~~hp~v~~V~yP  289 (395)
T PRK05967        223 VS-ANEKCWPQLLE----------AHGTLGLCAGPDDTYQILR--GLRTMGIRLEHHRKSALEIARWLEGRPDVARVLHP  289 (395)
T ss_pred             EE-cCHHHHHHHHH----------HHHHcCCCCCHHHHHHHHc--CcccHHHHHHHHHHHHHHHHHHHHhCCCCcEEECC
Confidence            43 33322111100          0111233345566676655  667888999999999999999999998875 4433


Q ss_pred             C----------------CeeEEEEEEcC
Q 048438          162 C----------------HFAVVCFRVSP  173 (239)
Q Consensus       162 ~----------------~~~iv~f~~~~  173 (239)
                      .                ..++++|.+++
T Consensus       290 gl~s~p~~~~~~~~~~g~gg~~sf~l~~  317 (395)
T PRK05967        290 ALPSFPGHEIWKRDFSGASGIFSFVLAA  317 (395)
T ss_pred             CCCCCccHHHHHHhCCCCceEEEEEEcC
Confidence            1                14699999974

>PRK06234 methionine gamma-lyase; Provisional

Probab=99.13  E-value=1.6e-09  Score=94.88  Aligned_cols=151  Identities=17%  Similarity=0.246  Sum_probs=103.2

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHh--CCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--c
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQF--GIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--C   80 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~--gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~   80 (239)
                      +-+|++...+|.+|.+.|+++|+++|+++  |++++||.+|+.+....+     + +. ++|+++.|++|+++++..  .
T Consensus       150 tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livDea~~~~~~~~~-----l-~~-g~Divv~S~sK~l~g~g~~~g  222 (400)
T PRK06234        150 TKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCTPYIQRP-----L-QL-GADVVVHSATKYLNGHGDVIA  222 (400)
T ss_pred             CeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEECCCCchhcCCc-----h-hh-CCcEEEeeccccccCCCCcee
Confidence            45777888899999999999999999997  999999999987644222     1 12 499999999999987753  4


Q ss_pred             eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE-E
Q 048438           81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEV-V  159 (239)
Q Consensus        81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~-~  159 (239)
                      |+++.+ +++.......        ......+....+...|..++  +.+.+..++++..++++++.+.|++.|.+.- .
T Consensus       223 G~v~~~-~~~~~~l~~~--------~~~~~~g~~l~p~~a~l~~~--~l~tl~~r~~~~~~na~~~a~~L~~~~~V~~V~  291 (400)
T PRK06234        223 GFVVGK-EEFINQVKLF--------GIKDMTGSVIGPFEAFLIIR--GMKTLQIRMEKHCKNAMKVAKFLESHPAVEKVY  291 (400)
T ss_pred             EEEEec-HHHHHHHHHH--------HHHHhcCCCCCHHHHHHHHh--ccCcHHHHHHHHHHHHHHHHHHHHcCCCeeEEE
Confidence            666653 3443322100        00000122333445555554  4456678888888999999999999887753 3


Q ss_pred             cC-----C-----------CeeEEEEEEcC
Q 048438          160 FP-----C-----------HFAVVCFRVSP  173 (239)
Q Consensus       160 ~~-----~-----------~~~iv~f~~~~  173 (239)
                      .|     |           ..++++|.+++
T Consensus       292 ~p~l~~~~~~~~~~~~~~~~g~l~s~~l~~  321 (400)
T PRK06234        292 YPGLESFEYYELAKKQMSLPGAMISFELKG  321 (400)
T ss_pred             CCCCCCCCcHHHHHHhCCCCCceEEEEecC
Confidence            32     1           13589999974

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=99.13  E-value=3.2e-09  Score=92.93  Aligned_cols=192  Identities=13%  Similarity=0.067  Sum_probs=104.2

Q ss_pred             cEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcc-c
Q 048438            5 PLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATL-D   79 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~-g   79 (239)
                      +.+|++....+.+|.+.|    +++|.++|++||+++++|.+|++.......+.....++ ..|.++++  |+++++. .
T Consensus       179 ~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~~~~~~~~-~pd~~~~s--K~l~~g~~~  255 (400)
T PTZ00125        179 VAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLLAHDHEGV-KPDIVLLG--KALSGGLYP  255 (400)
T ss_pred             eEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhHHHhcCC-CCCEEEEc--ccccCCCcC
Confidence            456666666788999888    99999999999999999999864211110000002233 27888765  9998764 6


Q ss_pred             ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC----CC
Q 048438           80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD----KR  155 (239)
Q Consensus        80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~----~g  155 (239)
                      +|+++.++ ++........      ...++ .+.+........+++.+..+++.   ++..++.+++++.|++.    +.
T Consensus       256 ig~v~~~~-~~~~~~~~~~------~~~t~-~~~~~~~~aa~~~l~~i~~~~~~---~~~~~~~~~l~~~l~~l~~~~~~  324 (400)
T PTZ00125        256 ISAVLAND-DVMLVIKPGE------HGSTY-GGNPLACAVAVEALEVLKEEKLA---ENAQRLGEVFRDGLKELLKKSPW  324 (400)
T ss_pred             cEEEEEcH-HHHhhccCCC------CCCCC-CcCHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHHHHHHhcCCC
Confidence            78777643 3333221100      00011 11122222223344444333333   34446677777777653    22


Q ss_pred             eEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCC
Q 048438          156 FEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLT  235 (239)
Q Consensus       156 ~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t  235 (239)
                      +..+ .+...++.+.++...                     ......+.++|.++|.++ .+   .+..++|++++...+
T Consensus       325 ~~~~-~~~g~~~~v~~~~~~---------------------~~~~~~~~~~l~~~Gv~v-~~---~~~~~lRi~~~~~~~  378 (400)
T PTZ00125        325 VKEI-RGKGLLNAIVFDHSD---------------------GVNAWDLCLKLKENGLLA-KP---THDNIIRFAPPLVIT  378 (400)
T ss_pred             eEEE-ecccEEEEEEEccCc---------------------chHHHHHHHHHHHCCeEE-ee---cCCCEEEEECCccCC
Confidence            2212 223345555554321                     011235667777777554 32   245789999775554


Q ss_pred             C
Q 048438          236 E  236 (239)
Q Consensus       236 ~  236 (239)
                      .
T Consensus       379 ~  379 (400)
T PTZ00125        379 K  379 (400)
T ss_pred             H
Confidence            4

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=99.13  E-value=4.5e-09  Score=92.18  Aligned_cols=203  Identities=14%  Similarity=0.088  Sum_probs=114.2

Q ss_pred             ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc
Q 048438            4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD   79 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g   79 (239)
                      .+.+|++....+++|.+.|    +++|.++|++||+++++|.+|++..-..........++ ..|.++++  |+++++..
T Consensus       191 ~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~~~~~~~~~~-~~d~~t~s--K~l~~g~~  267 (413)
T cd00610         191 EVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMFAFEHFGV-EPDIVTLG--KGLGGGLP  267 (413)
T ss_pred             CEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhhHhhcCC-CCCeEEEc--ccccCccc
Confidence            4667777777888899888    99999999999999999999975311111000001222 26776654  99988777


Q ss_pred             ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCC-eEE
Q 048438           80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKR-FEV  158 (239)
Q Consensus        80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g-~~~  158 (239)
                      +|+++.+ ++.+......  .....  .+. .+..........+++.+..   .+..++..++.+++.+.|+++.. ..+
T Consensus       268 ~g~~~~~-~~~~~~~~~~--~~~~~--~t~-~~~~~~~~a~~a~l~~l~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~  338 (413)
T cd00610         268 LGAVLGR-EEIMDAFPAG--PGLHG--GTF-GGNPLACAAALAVLEVLEE---EGLLENAAELGEYLRERLRELAEKHPL  338 (413)
T ss_pred             cEEEEEc-HHHHHhhccC--CCCCC--CCC-CcCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence            8887763 4443332000  00000  000 1111222333444555433   24556666888888888876421 111


Q ss_pred             E--cCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCC
Q 048438          159 V--FPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTE  236 (239)
Q Consensus       159 ~--~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~  236 (239)
                      +  ......++.+.+.+....           ...+    ......+.+.|.++|..+...    +...+|++++..+|+
T Consensus       339 ~~~~~~~g~~~~~~~~~~~~~-----------~~~~----~~~~~~~~~~l~~~gv~v~~~----~~~~lR~~~~~~~t~  399 (413)
T cd00610         339 VGDVRGRGLMIGIELVKDRAT-----------KPPD----KELAAKIIKAALERGLLLRPS----GGNVIRLLPPLIITE  399 (413)
T ss_pred             EEEeecCceEEEEEEecCCCc-----------CCcc----hHHHHHHHHHHHHCCeEEeec----CCCEEEEECCCcCCH
Confidence            1  123567888887653100           0000    122346777787776554432    246799998877765


Q ss_pred             c
Q 048438          237 E  237 (239)
Q Consensus       237 ~  237 (239)
                      +
T Consensus       400 ~  400 (413)
T cd00610         400 E  400 (413)
T ss_pred             H
Confidence            4

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>TIGR01141 hisC histidinol-phosphate aminotransferase

Probab=99.13  E-value=1.7e-09  Score=92.80  Aligned_cols=186  Identities=14%  Similarity=0.063  Sum_probs=112.1

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHh--CCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-ccce
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQF--GIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-LDCC   81 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~--gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~g   81 (239)
                      +-+|+++..+|.+|.+.|++++.++|+.+  ++++++|.+|+..... ..........+ .++++.+++|+++.| ..+|
T Consensus       143 ~~~v~l~~p~NptG~~~~~~~~~~l~~~~~~~~~ii~D~~y~~~~~~-~~~~~~~~~~~-~~i~~~S~sK~~g~~G~r~G  220 (346)
T TIGR01141       143 PKLVFLCSPNNPTGNLLSRSDIEAVLERTPEDALVVVDEAYGEFSGE-PSTLPLLAEYP-NLIVLRTLSKAFGLAGLRIG  220 (346)
T ss_pred             CCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhhcCC-ccHHHHHhhCC-CEEEEehhhHhhhchhhhce
Confidence            45677788899999999999999999887  9999999998732211 01111111222 346678999998544 3478


Q ss_pred             EEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc
Q 048438           82 CLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGM-ENLRHFLRSHVNMARLFERLVSGDKRFEVVF  160 (239)
Q Consensus        82 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~  160 (239)
                      ++++. ++.+.......      ..+.      ...+....+...+.. ..+++..++..++.+++.+.|++.+|+++. 
T Consensus       221 ~~~~~-~~~~~~~~~~~------~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~-  286 (346)
T TIGR01141       221 YAIAN-AEIIDALNKVR------APFN------LSRLAQAAAIAALRDDDFIEKTVEEINAERERLYDGLKKLPGLEVY-  286 (346)
T ss_pred             eeecC-HHHHHHHHhcc------CCCC------CCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEC-
Confidence            88763 34433221100      0011      111222222222222 235667777888899999999988888854 


Q ss_pred             CCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECC-EeEEEEEec
Q 048438          161 PCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGG-IYAIRFATG  231 (239)
Q Consensus       161 ~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g-~~~lR~~~~  231 (239)
                      ++..+.+.|.++. .                        .+++.++|.++|....+.....+ ..++|++++
T Consensus       287 ~~~g~~~~~~~~~-~------------------------~~~~~~~L~~~gI~v~~g~~f~~~~~~iRls~~  333 (346)
T TIGR01141       287 PSDANFVLIRFPR-D------------------------ADALFEALLEKGIIVRDLNSYPGLPNCLRITVG  333 (346)
T ss_pred             CCcCCEEEEecCC-C------------------------HHHHHHHHHHCCeEEEeCCCcCCCCCeEEEecC
Confidence            5556677777653 1                        12566677777655443322212 578999965

Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.

>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase

Probab=99.13  E-value=2.3e-09  Score=91.49  Aligned_cols=186  Identities=15%  Similarity=0.036  Sum_probs=110.1

Q ss_pred             EEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-ccceE
Q 048438            7 FLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-LDCCC   82 (239)
Q Consensus         7 ~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~g~   82 (239)
                      +|+++..+|.+|.+.|   +++|+++|+++|+++++|.+|...... ......... ..-+.++.+++|+++.| ..+|+
T Consensus       128 ~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~-~~~~~~~~~-~~~~i~~~S~SK~~g~~G~R~G~  205 (330)
T TIGR01140       128 VLVLCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFTPD-ASLAPQAAR-FPGLVVLRSLTKFFGLAGLRLGF  205 (330)
T ss_pred             EEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccCCc-cchhhHhcc-CCCEEEEEecchhhcCchhhhhh
Confidence            5667778999999999   667788889999999999999754321 111111111 12568889999998745 44688


Q ss_pred             EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHH-HHHHHHHHHHHHHHHHHHhCCCCeEEEcC
Q 048438           83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENL-RHFLRSHVNMARLFERLVSGDKRFEVVFP  161 (239)
Q Consensus        83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~-~~~~~~~~~la~~l~~~l~~~~g~~~~~~  161 (239)
                      ++.. ++++.......      ..+.      ...+....+.+.+....+ +...++..++.+++.+.|++.+.+++. +
T Consensus       206 i~~~-~~~~~~l~~~~------~~~~------~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~  271 (330)
T TIGR01140       206 VVAH-PALLARLREAL------GPWT------VNGPARAAGRAALADTAWQAATRARLAAERARLAALLARLGGLEVV-G  271 (330)
T ss_pred             eeCC-HHHHHHHHhcC------CCCC------chHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhCCCceEC-C
Confidence            7764 34433322100      0011      112223333333322223 455667778888999999988556653 4


Q ss_pred             CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEEC--CEeEEEEEecCCC
Q 048438          162 CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLG--GIYAIRFATGATL  234 (239)
Q Consensus       162 ~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~--g~~~lR~~~~~~~  234 (239)
                      +..+.+.+.+++                          ...+.++|.+.|..+.+.....  +..++|+++....
T Consensus       272 ~~~~f~~~~~~~--------------------------~~~l~~~l~~~gi~v~pg~~f~~~~~~~iRi~~~~~~  320 (330)
T TIGR01140       272 GTALFLLVRTPD--------------------------AAALHEALARRGILIRDFDNFPGLDPRYLRFALPTDE  320 (330)
T ss_pred             CCCeEEEEEcCC--------------------------HHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEecCHH
Confidence            444444443321                          1256677777776655544443  3468999987644

This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=99.12  E-value=5e-09  Score=91.67  Aligned_cols=190  Identities=13%  Similarity=0.057  Sum_probs=111.7

Q ss_pred             cEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438            5 PLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC   80 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~   80 (239)
                      +.+|++....+.+|.+.|    +++|.++|++||+++++|.+|++.......+.....++ ..|.+++  .|++++....
T Consensus       184 ~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~-~pDi~t~--sK~l~~G~~i  260 (398)
T PRK03244        184 TAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWFAHQHDGV-TPDVVTL--AKGLGGGLPI  260 (398)
T ss_pred             eEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccchHHhhhhhCC-CCCEEEE--chhhhCCccc
Confidence            456666767889999888    89999999999999999999975211111000002233 3787765  6999866667


Q ss_pred             eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc
Q 048438           81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF  160 (239)
Q Consensus        81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~  160 (239)
                      |.++.++ ++.......   .   ...++ .+.+........+++.+..+   +..++..++.++|.+.|+++ +..++.
T Consensus       261 g~~~~~~-~~~~~~~~~---~---~~~t~-~~~~~~~aaa~a~l~~~~~~---~~~~~~~~~~~~l~~~L~~~-~~~~~~  328 (398)
T PRK03244        261 GACLAFG-PAADLLTPG---L---HGSTF-GGNPVACAAALAVLDTIASE---GLLENAERLGEQLRAGIEAL-GHPLVD  328 (398)
T ss_pred             EEEEEcH-HHHhhccCC---C---CcCCC-CCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHhc-CCCcee
Confidence            8888753 333222110   0   00111 11122223333344444333   34556668889999999875 332222


Q ss_pred             C--CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCCc
Q 048438          161 P--CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTEE  237 (239)
Q Consensus       161 ~--~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~  237 (239)
                      .  ...+++.+.++..                        ....+.+++.++|.++..    .+..+||++++...|++
T Consensus       329 ~v~g~g~~~~i~~~~~------------------------~~~~~~~~l~~~Gv~~~~----~~~~~iR~~p~~~~t~~  379 (398)
T PRK03244        329 HVRGRGLLLGIVLTAP------------------------VAKAVEAAAREAGFLVNA----VAPDVIRLAPPLIITDA  379 (398)
T ss_pred             eEeeccEEEEEEEecc------------------------HHHHHHHHHHHCCeEEee----cCCCEEEEECCCcCCHH
Confidence            1  2455677776431                        123677788888866533    23478999987766654

>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional

Probab=99.11  E-value=9.2e-10  Score=97.85  Aligned_cols=159  Identities=16%  Similarity=0.187  Sum_probs=91.5

Q ss_pred             ccEEEEEecCCCCcc-c---ccChhHHHHHHHHhCCEEEEecccccc-cccCcc----ccc-ccCC-----CCCcceEEE
Q 048438            4 IPLFLCATIGTTAIT-A---VDPLKPLCDVAKQFGIWVHVDAAYAGS-ACIFPE----FRH-FIDG-----VEGADSFSL   68 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G-~---i~pl~~i~~i~~~~gi~lhvD~A~~~~-~~~~~~----~~~-~~~~-----~~~~Ds~~~   68 (239)
                      .+-+|+++.-+|.+| .   ..++++|+++|++||++++.|+||... ++...+    ++. .+..     ...+|++++
T Consensus       177 ~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i~~~~~s~~D~~~~  256 (460)
T PRK13238        177 NVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEIAREMFSYADGLTM  256 (460)
T ss_pred             ceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHHHhhhhcccCcEEEE
Confidence            355777888888887 4   445789999999999999999998653 221110    110 0100     124999999


Q ss_pred             cCcccCCCcccceEEEeeCcccccccccCCCCccCCCCceecCCCCCC-hHHHHHHHHH-hCHHHHHHHHHHHHHHHHHH
Q 048438           69 NAHKWFFATLDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFR-SLKLWFVIRN-YGMENLRHFLRSHVNMARLF  146 (239)
Q Consensus        69 ~~hK~l~~P~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~-~g~~g~~~~~~~~~~la~~l  146 (239)
                      ++||.+++|.| |++..++++........   .+....+...++.... ..++..+++. +..+    ..++..+..++|
T Consensus       257 Sg~K~g~~~~G-G~i~~~d~~l~~~~~~~---~~~~~g~~t~~g~~~~~~~Ala~~l~e~~~~~----~~~~~~~~~~~l  328 (460)
T PRK13238        257 SAKKDAMVNIG-GLLCFRDEDLFTECRTL---CILYEGFPTYGGLAGRDMEALAVGLYEGMDED----YLAYRIGQVEYL  328 (460)
T ss_pred             ecccCCCCcce-eEEEcChHHHHHHhhhc---ccccCCcccccCcHHHHHHHHHhhHHHhhChH----HHHHHHHHHHHH
Confidence            99999999986 77777654444433211   0000111112221111 2222223332 2222    333333456889


Q ss_pred             HHHHhCCCCeEEEcCCCeeEEEEEE
Q 048438          147 ERLVSGDKRFEVVFPCHFAVVCFRV  171 (239)
Q Consensus       147 ~~~l~~~~g~~~~~~~~~~iv~f~~  171 (239)
                      .+.|.+. |+.++.|....-|...+
T Consensus       329 ~~~L~~~-G~~~~~p~Gg~~v~~d~  352 (460)
T PRK13238        329 GEGLEEA-GVPIQTPAGGHAVFVDA  352 (460)
T ss_pred             HHHHHHC-CCCeEccCCceEEEEEc
Confidence            9999886 99988766544444444

>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase

Probab=99.11  E-value=5.4e-09  Score=92.06  Aligned_cols=160  Identities=18%  Similarity=0.218  Sum_probs=99.1

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc-ceEE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD-CCCL   83 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g-~g~l   83 (239)
                      +-+|++...+|.+|.+.|+++|+++|+++|++++||++|+.+....+     . .. ++|+++.+++|+++++.. .|.+
T Consensus       143 t~~V~le~p~NPtg~v~dl~~I~~la~~~~i~livD~t~~~~~~~~~-----l-~~-g~Divv~S~sK~l~g~G~~lGg~  215 (418)
T TIGR01326       143 TKAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIVDNTFATPYLCRP-----I-DH-GADIVVHSATKYIGGHGTAIGGV  215 (418)
T ss_pred             CeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCchhhcCCc-----h-hc-CCeEEEECccccccCCccceEEE
Confidence            44666777789999999999999999999999999999986633222     1 11 499999999999876532 4555


Q ss_pred             EeeCcccccccccC---CCCccCCC------C-------------ceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHH
Q 048438           84 WATNPEYLKNKATE---SKPVVDYK------D-------------WQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVN  141 (239)
Q Consensus        84 ~~~~~~~l~~~~~~---~~~~~~~~------~-------------~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~  141 (239)
                      ++..+.........   ........      .             +....|-...+...|..++  |.+.+..|+++..+
T Consensus       216 v~~~~~~~~~~~~~~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~a~~~~~--~l~tl~~R~~~~~~  293 (418)
T TIGR01326       216 IVDGGKFDWANGRFPLFTTPDPSYHGLVFTETFGNPAFIVKARVQLLRDLGAALSPFNAFLLLQ--GLETLSLRMERHVE  293 (418)
T ss_pred             EEecccccccccccccccCCCCccccchhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHHC--CcccHHHHHHHHHH
Confidence            55332211110000   00000000      0             0000111122344454443  45667778888888


Q ss_pred             HHHHHHHHHhCCCCeEEEc-C-----C------------CeeEEEEEEcC
Q 048438          142 MARLFERLVSGDKRFEVVF-P-----C------------HFAVVCFRVSP  173 (239)
Q Consensus       142 la~~l~~~l~~~~g~~~~~-~-----~------------~~~iv~f~~~~  173 (239)
                      .+..+.+.|.+.|++..+. |     |            ..++++|.+++
T Consensus       294 ~a~~la~~L~~~~~V~~V~yP~l~~~~~~~~~~~~~~~g~g~~~s~~l~~  343 (418)
T TIGR01326       294 NALKVAEFLEAHPKVAWVNYPGLASHPHHALAKKYLPKGFGAVLSFEIKG  343 (418)
T ss_pred             HHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhccCCCcceEEEEecC
Confidence            8999999999988886543 2     1            13599999875

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase

Probab=99.11  E-value=2.4e-09  Score=93.19  Aligned_cols=150  Identities=15%  Similarity=0.179  Sum_probs=86.9

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCc--ccCCCcccceE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAH--KWFFATLDCCC   82 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~h--K~l~~P~g~g~   82 (239)
                      +-+|+.+   +.+|...|+++|.++|++||+++++|+||+.|.. .+. +. +......|+.++|+|  |++..+.| |+
T Consensus       122 t~~v~~~---~~~G~~~~~~~i~~l~~~~~~~lI~D~a~a~g~~-~~~-~~-~g~~~~~d~~~~S~~~~K~~~~~~G-G~  194 (380)
T TIGR03588       122 PKAIVPV---DFAGKSVDMQAIAALAKKHGLKIIEDASHALGAE-YGG-KP-VGNCRYADATVFSFHPVKIITTAEG-GA  194 (380)
T ss_pred             ceEEEEe---CCCCccCCHHHHHHHHHHcCCEEEEECCCcccCc-cCC-Ee-CCCccccceEEEecCCCCcccccCc-eE
Confidence            4455544   3579999999999999999999999999998865 321 11 111013599999998  99877644 44


Q ss_pred             EEeeCccccccccc--CCCCccCC--------CCceec---CCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Q 048438           83 LWATNPEYLKNKAT--ESKPVVDY--------KDWQIT---LSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERL  149 (239)
Q Consensus        83 l~~~~~~~l~~~~~--~~~~~~~~--------~~~~~~---~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~  149 (239)
                      ++..++........  ..+...+.        ..+..+   .|..+.--.+-+++.....+.++++.++..++++++.+.
T Consensus       195 v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~n~~m~~l~aa~g~~qL~~l~~~~~~r~~~~~~~~~~  274 (380)
T TIGR03588       195 VTTNDEELAERMRLLRSHGITKDPLLFEKQDEGPWYYEQQELGFNYRMTDIQAALGLSQLKKLDRFVAKRREIAARYDRL  274 (380)
T ss_pred             EEECCHHHHHHHHHHHHCCCCCCcccccccccCcceeeeeccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55544433221110  00000000        011111   111111111111211112345788888899999999999


Q ss_pred             HhCCCCeEEEcC
Q 048438          150 VSGDKRFEVVFP  161 (239)
Q Consensus       150 l~~~~g~~~~~~  161 (239)
                      |+.+++++++.+
T Consensus       275 L~~~~~~~~~~~  286 (380)
T TIGR03588       275 LKDLPYFTPLTI  286 (380)
T ss_pred             hcCCCCccCCCC
Confidence            999887775543

This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=99.09  E-value=3e-09  Score=91.36  Aligned_cols=187  Identities=16%  Similarity=0.092  Sum_probs=101.5

Q ss_pred             EEEEEecCCCCcccc---cChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceE
Q 048438            6 LFLCATIGTTAITAV---DPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCC   82 (239)
Q Consensus         6 ~~vv~t~gtt~~G~i---~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~   82 (239)
                      -+|++ .|++++|.+   .||++|+++|+++|++++||.||+.+......... .... ++|.++.+++|++.++. .|+
T Consensus       138 ~lIii-tg~s~~G~v~~~~~L~~i~~la~~~~~~livDEAy~~~~~~~~~~~~-~~~~-~~divv~s~SKalaG~r-~G~  213 (346)
T TIGR03576       138 SLVVI-TGSTMDLKVVSEEDLKRVIKQAKSKEAIVLVDDASGARVRRLYGQPP-ALDL-GADLVVTSTDKLMDGPR-GGL  213 (346)
T ss_pred             eEEEE-ECCCCCCcccCHHHHHHHHHHHHHcCCEEEEECCccccccccCCCCC-HHHc-CCcEEEeccchhccccc-eEE
Confidence            34444 467889998   88999999999999999999999876542111111 1111 37999999999886776 366


Q ss_pred             EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcCC
Q 048438           83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPC  162 (239)
Q Consensus        83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~~  162 (239)
                      ++. +++.+.......      ..+.+. .......+...+|+.+..   +.+.+...+..+++.+.++.   +.+. ++
T Consensus       214 v~~-~~~li~~l~~~~------~~~~~s-~~~~~~~aa~~aL~~~~~---~~~~~~l~~r~~~~~~~l~~---~~~~-~~  278 (346)
T TIGR03576       214 LAG-RKELVDKIKSVG------EQFGLE-AQAPLLAAVVRALEEFEL---SRIRDAFKRKEEVYLRLFDK---LNVE-RT  278 (346)
T ss_pred             EEe-CHHHHHHHHHhh------cCcccC-ccHHHHHHHHHHHhhccH---HHHHHHHHHHHHHHHHHHHh---CCCC-cC
Confidence            654 344333221100      011111 111112222334443322   33344455666666666653   3332 34


Q ss_pred             CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEEC-CEeEEEEEecCCC
Q 048438          163 HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLG-GIYAIRFATGATL  234 (239)
Q Consensus       163 ~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~-g~~~lR~~~~~~~  234 (239)
                      ..|-+.+++++..                +    .+   ...+.|.+.|...++..... ...++|+++..+.
T Consensus       279 ~~~f~~~~~~~~~----------------~----~~---~~~~ll~~~gV~v~~~~~f~~~~~~vRis~~~~~  328 (346)
T TIGR03576       279 PTGFVIKGVEEEK----------------L----IE---IGLDLLRNYGIITITAVGMPGASKTLRFDLAAKD  328 (346)
T ss_pred             CCeEEEEeCCCCC----------------H----HH---HHHHHHHhCCEEEeCCcccCCCCCeEEEEEecCh
Confidence            5665555553210                0    11   23344555666655433332 2568999998765

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>PRK08056 threonine-phosphate decarboxylase; Provisional

Probab=99.08  E-value=5.7e-09  Score=89.99  Aligned_cols=190  Identities=10%  Similarity=0.014  Sum_probs=110.6

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-ccc
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-LDC   80 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~   80 (239)
                      +-+|+.+.-+|.||.+.+   +++|+++|+++++++++|.++..........-..+...+ .++++.|++|+++.| .-+
T Consensus       143 ~k~v~l~~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~i~~~S~SK~~~~~G~Ri  221 (356)
T PRK08056        143 LDCLFLCTPNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQLADNP-HLWVLRSLTKFYAIPGLRL  221 (356)
T ss_pred             CCEEEEeCCcCCCCCCCCHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHHhccCC-CEEEEEechhhccCcchhh
Confidence            346667888999999998   888999999999999999998543211100001122222 568889999998744 447


Q ss_pred             eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Q 048438           81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNY-GMENLRHFLRSHVNMARLFERLVSGDKRFEVV  159 (239)
Q Consensus        81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~  159 (239)
                      |+++..++..+.......      ..+.      ...+....+...+ +.+-.++..++..+..+++.+.|++++++++.
T Consensus       222 G~~v~~~~~~~~~l~~~~------~~~~------~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~  289 (356)
T PRK08056        222 GYLVNSDDAAVARMRRQQ------MPWS------INAFAALAGEVILQDRAYQQATWQWLAEEGARFYQALCALPLLTVW  289 (356)
T ss_pred             eeeecCCHHHHHHHHHhC------CCCc------hhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEc
Confidence            777654333332221100      0011      1112222222222 22223444555667788899999888788765


Q ss_pred             cCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECC--EeEEEEEecCC
Q 048438          160 FPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGG--IYAIRFATGAT  233 (239)
Q Consensus       160 ~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g--~~~lR~~~~~~  233 (239)
                       ++..+-+.++++..                         ...+.+.|.++|..........+  ..++|+++..+
T Consensus       290 -~~~~~~~~~~~~~~-------------------------~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis~~~~  339 (356)
T PRK08056        290 -PGRANYLFLRCERP-------------------------DIDLQRALLTQRILIRSCANYPGLDSRYYRVAIRSA  339 (356)
T ss_pred             -CCCCcEEEEEcCCC-------------------------hHHHHHHHHHCCeEEEECCCCCCCCCCEEEEEEcCH
Confidence             55555555554321                         11466677777766554443322  35899998753

>PRK08361 aspartate aminotransferase; Provisional

Probab=99.08  E-value=5.3e-09  Score=91.31  Aligned_cols=193  Identities=12%  Similarity=0.084  Sum_probs=108.6

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--   79 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--   79 (239)
                      +-+|+++..+|.+|.+.|   +++|+++|+++++++++|.+++.....-.............++++.+++|.++.| |  
T Consensus       167 ~~~v~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~-GlR  245 (391)
T PRK08361        167 TRMIVINYPNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAPDNTILANSFSKTFAMT-GWR  245 (391)
T ss_pred             cEEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcCCCCEEEEecCchhcCCc-Hhh
Confidence            345667778999999999   8899999999999999999986543211111111111112578889999987655 6  


Q ss_pred             ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHh--C--HHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 048438           80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNY--G--MENLRHFLRSHVNMARLFERLVSGDKR  155 (239)
Q Consensus        80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--g--~~g~~~~~~~~~~la~~l~~~l~~~~g  155 (239)
                      +|+++.. ++.+......       ..+....   ...+....+...+  +  .+.+++..+...+..+.+.+.|++.++
T Consensus       246 iG~~~~~-~~~~~~~~~~-------~~~~~~~---~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~  314 (391)
T PRK08361        246 LGFVIAP-EQVIKDMIKL-------HAYIIGN---VASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVLKRLKEMPH  314 (391)
T ss_pred             hhhhccC-HHHHHHHHHH-------HhhhccC---CChHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            7777763 3333322100       0000000   0112122222222  1  124556666667888889999998878


Q ss_pred             eEEEcCCCeeE-EEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHh-cCcEEEEEEEE--CCEeEEEEEec
Q 048438          156 FEVVFPCHFAV-VCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINA-SGKAYMTNVVL--GGIYAIRFATG  231 (239)
Q Consensus       156 ~~~~~~~~~~i-v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~--~g~~~lR~~~~  231 (239)
                      +++.. ++.+. +..++++...               +       ...+.+.|.+ .|..+......  .+..++|+++.
T Consensus       315 ~~~~~-p~g~~~~~~~l~~~~~---------------~-------~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~  371 (391)
T PRK08361        315 IKVFE-PKGAFYVFANIDETGM---------------S-------SEDFAEWLLEKARVVVIPGTAFGKAGEGYIRISYA  371 (391)
T ss_pred             CeecC-CCEEEEEEEECCCCCC---------------C-------HHHHHHHHHHhCCEEEcCchhhCCCCCCEEEEEec
Confidence            87654 44443 4445543211               0       1134455544 45544443332  24578999987


Q ss_pred             C
Q 048438          232 A  232 (239)
Q Consensus       232 ~  232 (239)
                      .
T Consensus       372 ~  372 (391)
T PRK08361        372 T  372 (391)
T ss_pred             C
Confidence            4

>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases

Probab=99.08  E-value=1.2e-11  Score=103.26  Aligned_cols=148  Identities=19%  Similarity=0.150  Sum_probs=86.0

Q ss_pred             cEEEEEecCCCCc--cccc---ChhHHHHHHHHhCCEEEEecccccccccCc--ccccccCCCCCcceEEEcCcccCCCc
Q 048438            5 PLFLCATIGTTAI--TAVD---PLKPLCDVAKQFGIWVHVDAAYAGSACIFP--EFRHFIDGVEGADSFSLNAHKWFFAT   77 (239)
Q Consensus         5 p~~vv~t~gtt~~--G~i~---pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~--~~~~~~~~~~~~Ds~~~~~hK~l~~P   77 (239)
                      +..+|....+|+.  |.+-   .|++|.++||+||+++|+|||.-+.++...  ..+...   ..+|+++++++|.+++|
T Consensus       124 ~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~~~~~e~~---~~~D~v~~~~tK~~g~~  200 (290)
T PF01212_consen  124 QPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGARLANAAAALGVSLAEIA---AGADSVSFGGTKNGGAP  200 (290)
T ss_dssp             GEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHHHHHHHHHH---TTSSEEEEETTSTT-SS
T ss_pred             CccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHHhhhcccccHHHHh---hhCCEEEEEEEcccccc
Confidence            4455556666666  8755   567788889999999999999765544211  112223   35999999999999998


Q ss_pred             ccceEEEeeCcccccccccCCCCccCCCCceecCCCC-CChHHH---H--HHHHHhCHHHHHHHHHHHHHHHHHHHHHHh
Q 048438           78 LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRS-FRSLKL---W--FVIRNYGMENLRHFLRSHVNMARLFERLVS  151 (239)
Q Consensus        78 ~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~--~~l~~~g~~g~~~~~~~~~~la~~l~~~l~  151 (239)
                      .|.  +++.+++++......        ...+.++.+ .+.+..   +  .++..  .+....+.++.+++++++.+.|+
T Consensus       201 ~Ga--vl~~~~~~i~~~~~~--------~k~~gg~~~~~G~~~a~~~~~~~~l~~--l~~~~~~~~~~~~~A~~La~~l~  268 (290)
T PF01212_consen  201 GGA--VLAGNKEFIAKARRQ--------RKRLGGGMRQAGVLAAAELYQFAALRA--LELWLERARHANAMAKRLAAGLE  268 (290)
T ss_dssp             SEE--EEEESHHHHHHHHHH--------HHHHTHHHHHTTHHHHHHHHHHHHHCH--EECSHHHHHCHHHHHHCHHHCHH
T ss_pred             cce--EEEechHHHHHHHHH--------HHHhccCeeecceeeeechhhHHHHHH--HHhhHHHHHHHHHHHHHHHHHHH
Confidence            653  444455655433210        000000001 111111   1  12221  12235677888999999999999


Q ss_pred             CCCCeEEEcCCCeeEEE
Q 048438          152 GDKRFEVVFPCHFAVVC  168 (239)
Q Consensus       152 ~~~g~~~~~~~~~~iv~  168 (239)
                      .+ ++.+..++++|.+.
T Consensus       269 ~~-~~~~~~~~~tn~~~  284 (290)
T PF01212_consen  269 AL-GGVLPRPVETNQVF  284 (290)
T ss_dssp             EE-CEEEETTSS-HHHH
T ss_pred             HC-CCcccCCCCCcEEe
Confidence            97 66677777776543

It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....

>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []

Probab=99.06  E-value=8.2e-10  Score=95.87  Aligned_cols=144  Identities=19%  Similarity=0.202  Sum_probs=86.8

Q ss_pred             EEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcc-------eEEEcCcccCCCcccce
Q 048438            9 CATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGAD-------SFSLNAHKWFFATLDCC   81 (239)
Q Consensus         9 v~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~D-------s~~~~~hK~l~~P~g~g   81 (239)
                      ++....|..|.+-|+++|+++||++++.++||.|||+..-..+-++... .+ ++|       .++-|.||.|.+...++
T Consensus       172 vvlt~PTY~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~lp~~a~-~~-gad~~~~~~~~vvqS~HKtL~altQts  249 (417)
T PF01276_consen  172 VVLTSPTYYGVCYDIKEIAEICHKHGIPLLVDEAHGAHFGFHPLPRSAL-AL-GADRPNDPGIIVVQSTHKTLPALTQTS  249 (417)
T ss_dssp             EEEESS-TTSEEE-HHHHHHHHCCTECEEEEE-TT-TTGGCSGGGTTCS-ST-TSS-CTSBEEEEEEEHHHHSSS-TT-E
T ss_pred             EEEeCCCCCeEEECHHHHHHHhcccCCEEEEEccccccccCCCCccchh-hc-cCccccccceeeeechhhcccccccce
Confidence            3445567899999999999999999999999999998765443222222 12 588       99999999999999999


Q ss_pred             EEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHH----HHHhCHHHHHHHHHHHHHHHHHHHHHH---hCCC
Q 048438           82 CLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFV----IRNYGMENLRHFLRSHVNMARLFERLV---SGDK  154 (239)
Q Consensus        82 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~g~~g~~~~~~~~~~la~~l~~~l---~~~~  154 (239)
                      .+.+++...+....-.       ..+..-.++. .+..+.++    .+.+....-++.+++..++++.+++.|   .+++
T Consensus       250 ~lh~~~~~~v~~~~~~-------~~l~~~~TTS-PSY~lmASlD~a~~~m~~~~G~~l~~~~i~~a~~~R~~i~~~~~~~  321 (417)
T PF01276_consen  250 MLHVKGDRIVDHERVN-------EALSMHQTTS-PSYPLMASLDVARAQMEEEEGRELLEEAIELAEEFRKKINRLNDIW  321 (417)
T ss_dssp             EEEEETCCCTTHHHHH-------HHHHHHS-SS---HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHCCT-
T ss_pred             EEEecCCCcccHHHHH-------HHHHHHcCCC-hHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            9999765322111000       0000001111 12333333    234422222456677788888899988   6788


Q ss_pred             CeEEEcCC
Q 048438          155 RFEVVFPC  162 (239)
Q Consensus       155 g~~~~~~~  162 (239)
                      +|+++.+.
T Consensus       322 ~~~~~~~~  329 (417)
T PF01276_consen  322 GFKVLGPE  329 (417)
T ss_dssp             SSEESS-S
T ss_pred             eEecCCcc
Confidence            88888764

One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.

>PRK06108 aspartate aminotransferase; Provisional

Probab=99.05  E-value=3.3e-09  Score=92.15  Aligned_cols=196  Identities=13%  Similarity=0.119  Sum_probs=111.0

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEeccccccccc-Ccccccc--cCCCCCcceEEEcCcccCCCc-
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACI-FPEFRHF--IDGVEGADSFSLNAHKWFFAT-   77 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~-~~~~~~~--~~~~~~~Ds~~~~~hK~l~~P-   77 (239)
                      +-+|+++..+|.||.+.|   +++|+++|+++|+++++|.+|+..... -......  +.....-.+++.+++|.++.| 
T Consensus       159 ~~~i~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G  238 (382)
T PRK06108        159 TRALFINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMTG  238 (382)
T ss_pred             ceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEEEEeechhhccCcc
Confidence            446677788899998765   688899999999999999998865432 1000000  111112347788999987543 


Q ss_pred             ccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438           78 LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE  157 (239)
Q Consensus        78 ~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~  157 (239)
                      ..+|+++.. ++.+......    .   .+...+...........++.. +.+.+++..++..++.+++.+.|++.++++
T Consensus       239 ~RiG~~~~~-~~~~~~~~~~----~---~~~~~~~~~~~q~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~  309 (382)
T PRK06108        239 WRLGWLVAP-PALGQVLEKL----I---EYNTSCVAQFVQRAAVAALDE-GEDFVAELVARLRRSRDHLVDALRALPGVE  309 (382)
T ss_pred             cceeeeeCC-HHHHHHHHHH----H---HhcccCCChHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            347888863 3333322110    0   000000011111122222321 334456677778888899999998888888


Q ss_pred             EEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhc-CcEEEEEEEE--CCEeEEEEEecC
Q 048438          158 VVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINAS-GKAYMTNVVL--GGIYAIRFATGA  232 (239)
Q Consensus       158 ~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~--~g~~~lR~~~~~  232 (239)
                      +..+.....+.+++++..                       -...+.+.|.++ |.........  .+..++|+++..
T Consensus       310 ~~~p~~g~~~~~~l~~~~-----------------------~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ris~~~  364 (382)
T PRK06108        310 VAKPDGAMYAFFRIPGVT-----------------------DSLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFAR  364 (382)
T ss_pred             ccCCCeeEEEEEeCCCCC-----------------------CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC
Confidence            764433334555665321                       012455666544 5544333322  245789999886

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=99.05  E-value=7.1e-09  Score=90.69  Aligned_cols=190  Identities=14%  Similarity=0.075  Sum_probs=107.4

Q ss_pred             cEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-cc
Q 048438            5 PLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-LD   79 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g   79 (239)
                      +.+|++....+.+|.+.|    +++|.++|++||+++++|.+|.+.......+.....++ ..|.+++  .|.++++ ..
T Consensus       187 ~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~-~pdi~~~--sK~lg~gg~~  263 (396)
T PRK04073        187 TAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLFACDWDNV-TPDMYIL--GKALGGGVFP  263 (396)
T ss_pred             eEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcHHHHhhhcCC-CCCEEEe--cccccCCCCc
Confidence            467778888889999876    89999999999999999999985311110000012233 3787775  6998765 44


Q ss_pred             ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Q 048438           80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVV  159 (239)
Q Consensus        80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~  159 (239)
                      .|.+..+ ++.........      ...+ .++.+.......++|+.+..+   +..++..++.+++.+.|+++ +...+
T Consensus       264 ig~~~~~-~~i~~~~~~~~------~~~t-~~~~~~~~aaa~aaL~~~~~~---~l~~~~~~~~~~l~~~L~~l-~~~~i  331 (396)
T PRK04073        264 ISCVAAN-RDILGVFTPGS------HGST-FGGNPLACAVSIAALEVLEEE---KLPERSLELGEYFKEQLKEI-DNPMI  331 (396)
T ss_pred             ceEEEEc-HHHHhhhcCCC------CCCC-CCCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHhh-cCCcc
Confidence            6777654 33333221100      0001 111122222223344433233   34455567889999999875 22222


Q ss_pred             c--CCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCCc
Q 048438          160 F--PCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTEE  237 (239)
Q Consensus       160 ~--~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~  237 (239)
                      .  ++..+++.+.++..                         ...+.++|.++|.+. .+   .+..++|+++....|++
T Consensus       332 ~~~~~~g~~~~~~~~~~-------------------------~~~~~~~l~~~Gv~~-~~---~~~~~iRi~p~l~~t~e  382 (396)
T PRK04073        332 KEVRGRGLFIGVELNEP-------------------------ARPYCEALKEEGLLC-KE---THETVIRFAPPLVITKE  382 (396)
T ss_pred             cceecceEEEEEEecch-------------------------HHHHHHHHHHCCeEE-ec---CCCCEEEEECCcccCHH
Confidence            2  23345666665421                         125666777776553 32   24468999987666654


Q ss_pred             C
Q 048438          238 R  238 (239)
Q Consensus       238 ~  238 (239)
                      |
T Consensus       383 ~  383 (396)
T PRK04073        383 E  383 (396)
T ss_pred             H
Confidence            3

>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

Probab=99.05  E-value=1.6e-08  Score=84.82  Aligned_cols=159  Identities=19%  Similarity=0.215  Sum_probs=103.0

Q ss_pred             EEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-ccceEEEe
Q 048438            7 FLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-LDCCCLWA   85 (239)
Q Consensus         7 ~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~g~l~~   85 (239)
                      +|.+-.-.|.-+.+.|+++|+++||++|++++||-..+.+++.-|     ++.  ++|.++-|..||+++. ...|.+++
T Consensus       150 avf~EtigNP~~~v~Die~ia~iAh~~gvpliVDNT~atpyl~rP-----~~h--GADIVvHS~TK~igGhGt~iGG~iV  222 (426)
T COG2873         150 AVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTFATPYLCRP-----IEH--GADIVVHSATKYIGGHGTAIGGVIV  222 (426)
T ss_pred             eEEEEeccCCCccccCHHHHHHHHHHcCCcEEEecCCCcceecch-----hhc--CCCEEEEeecccccCCccccceEEE
Confidence            444555567789999999999999999999999999988766333     221  5999999999999875 33555666


Q ss_pred             eCc--cccc-ccccC-CCCccCCCCceec---------------CCCC----CChHHHHHHHHHhCHHHHHHHHHHHHHH
Q 048438           86 TNP--EYLK-NKATE-SKPVVDYKDWQIT---------------LSRS----FRSLKLWFVIRNYGMENLRHFLRSHVNM  142 (239)
Q Consensus        86 ~~~--~~l~-~~~~~-~~~~~~~~~~~~~---------------~~~~----~~~~~~~~~l~~~g~~g~~~~~~~~~~l  142 (239)
                      ...  ++.. ...+. .....++....+.               +-|.    ..+...|..+  .|.|.+.-|++++.++
T Consensus       223 D~G~FDw~~~~rfP~~~~p~p~YhGl~~~~~~g~~af~~~~r~~~lRDlGa~lsPfnAfl~l--qGlETL~LRmerH~~N  300 (426)
T COG2873         223 DGGKFDWTANGRFPEFTTPDPSYHGLVYTETFGNAAFIIKARVQLLRDLGATLSPFNAFLLL--QGLETLSLRMERHCEN  300 (426)
T ss_pred             eCCccccccCCCCcccCCCCccccceehhhhcccHHHHHHHHHHHHHhcccccCcHHHHHHH--hchhhhHHHHHHHHHh
Confidence            322  2221 01100 0001111111100               0111    1223344333  4778888899999999


Q ss_pred             HHHHHHHHhCCCCeEEEcCC------------------CeeEEEEEEcCC
Q 048438          143 ARLFERLVSGDKRFEVVFPC------------------HFAVVCFRVSPL  174 (239)
Q Consensus       143 a~~l~~~l~~~~g~~~~~~~------------------~~~iv~f~~~~~  174 (239)
                      +..+.+.|++.|.+.-++-|                  ..++++|.+++.
T Consensus       301 A~~vA~~L~~HpkV~~V~YpgL~~~~~h~la~kyl~~g~g~vltF~~kgg  350 (426)
T COG2873         301 ALKVAEFLENHPKVAWVNYPGLASHPYHALAKKYLPKGAGAVLTFGVKGG  350 (426)
T ss_pred             HHHHHHHHhcCCCeeeeecCCCCCCcchhHHHhhccCCCceEEEEEecCh
Confidence            99999999999888766421                  136999999874

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.02  E-value=1.4e-08  Score=95.86  Aligned_cols=195  Identities=15%  Similarity=0.116  Sum_probs=124.5

Q ss_pred             EEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCC-----Ccccce
Q 048438            7 FLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFF-----ATLDCC   81 (239)
Q Consensus         7 ~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~-----~P~g~g   81 (239)
                      +.++....+..|.+.|+++|++++|++|.+++|++=..+..+..+     -..+ ++|+++.+.++|+.     +|. +|
T Consensus       196 ~~v~~q~Pn~~G~ied~~~i~~~~h~~gal~~~~ad~~al~ll~~-----Pge~-GaDi~vg~~q~fg~p~g~GGP~-aG  268 (939)
T TIGR00461       196 FGCLLQYPATDGSILDYKQLIDALHSHKSLVSVAADLMALTLLTP-----PGHY-GADIVLGSSQRFGVPMGYGGPH-AA  268 (939)
T ss_pred             EEEEEECCCCCeEEecHHHHHHHHHHcCCEEEEEechHHhCCcCC-----HHHc-CCcEEeeCCCccCCCCCCCCCc-ee
Confidence            455566678899999999999999999999999664444333322     1122 49999777777654     443 78


Q ss_pred             EEEeeCcccccccccC-CCCccCCC---Ccee--c---CC-CCC--C-----h---HHHH--HHHHHhCHHHHHHHHHHH
Q 048438           82 CLWATNPEYLKNKATE-SKPVVDYK---DWQI--T---LS-RSF--R-----S---LKLW--FVIRNYGMENLRHFLRSH  139 (239)
Q Consensus        82 ~l~~~~~~~l~~~~~~-~~~~~~~~---~~~~--~---~~-~~~--~-----~---~~~~--~~l~~~g~~g~~~~~~~~  139 (239)
                      ++.+++ .+.+..... -+.+.|..   .+.+  +   .. ||-  .     +   +++.  ..+..+|.+|++++.++.
T Consensus       269 ~~a~~~-~l~r~lPgrivG~s~D~~G~~~~~l~LqtReqhIrRekAtSNICt~qaL~a~~a~~Y~~~~G~~GL~~iA~~~  347 (939)
T TIGR00461       269 FFAVKD-EYNRKMPGRIVGVSKDALGNTALRLALQTREQHIRRDKATSNICTAQVLLANVASSYCVYHGPKGLKNIARRI  347 (939)
T ss_pred             eeeecH-hhHhhCCCCceeEEecCCCCccceeecccccccccccccCcchhHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
Confidence            888864 333322110 00001110   1111  1   11 221  1     1   1222  236778999999999999


Q ss_pred             HHHHHHHHHHHhCCCCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEE
Q 048438          140 VNMARLFERLVSGDKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVV  219 (239)
Q Consensus       140 ~~la~~l~~~l~~~~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~  219 (239)
                      +.++.++.+.|.+ .|++++.++..+.+.++++...                        ..++.+++.++|.. +..  
T Consensus       348 ~~~a~~l~~~L~~-~G~~~~~~~fF~~~~v~~~~~~------------------------~~~i~~~~~~~gi~-l~~--  399 (939)
T TIGR00461       348 HSLTSILANGLEN-DPHELINKTWFDTLTVKVGNGI------------------------SSELLKAAEEFNIN-LRA--  399 (939)
T ss_pred             HHHHHHHHHHHHh-CCCcccCCCccceEEEEeCCCC------------------------HHHHHHHHHHCCCe-eee--
Confidence            9999999999998 6999998877788888874211                        12566777777776 222  


Q ss_pred             ECCEeEEEEEecCCCCCcC
Q 048438          220 LGGIYAIRFATGATLTEER  238 (239)
Q Consensus       220 ~~g~~~lR~~~~~~~t~~~  238 (239)
                       .....+++|++-.+|.+|
T Consensus       400 -~~~~~i~~s~~E~~t~~d  417 (939)
T TIGR00461       400 -VDTTTVGIALDETTTKAD  417 (939)
T ss_pred             -cCCCEEEEEeecCCCHHH
Confidence             223478999988887664

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>PRK13237 tyrosine phenol-lyase; Provisional

Probab=99.02  E-value=2.8e-09  Score=93.26  Aligned_cols=154  Identities=13%  Similarity=0.201  Sum_probs=92.6

Q ss_pred             EEEEecCCCCc-ccc---cChhHHHHHHHHhCCEEEEecccccccc-cCc----ccccc-c----CC-CCCcceEEEcCc
Q 048438            7 FLCATIGTTAI-TAV---DPLKPLCDVAKQFGIWVHVDAAYAGSAC-IFP----EFRHF-I----DG-VEGADSFSLNAH   71 (239)
Q Consensus         7 ~vv~t~gtt~~-G~i---~pl~~i~~i~~~~gi~lhvD~A~~~~~~-~~~----~~~~~-~----~~-~~~~Ds~~~~~h   71 (239)
                      +|+++...+.. |..   .++++|.++|++||+++|.|||+..+.. .+.    .+... +    .. ...+|.+++|+|
T Consensus       180 lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~DaAra~gna~fI~~re~~y~~~~i~ei~~e~~s~aD~~t~S~~  259 (460)
T PRK13237        180 YICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDATRCVENAYFIKEREEGYQDKSIKEIVHEMFSYADGCTMSGK  259 (460)
T ss_pred             ceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEECcchhcChhhhcccccccCCCcHhHHhhhccCcCcEEEEeCC
Confidence            34444455555 443   4789999999999999999999987733 221    11110 1    00 135999999999


Q ss_pred             ccCCCcccceEEEeeCcccccccccC---CCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Q 048438           72 KWFFATLDCCCLWATNPEYLKNKATE---SKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFER  148 (239)
Q Consensus        72 K~l~~P~g~g~l~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~  148 (239)
                      |.+.+|.| |++.++++++.......   ..+...+   .-..+|...+++.  .+...-.   .+.+++..+.+++|.+
T Consensus       260 K~~~~~~G-G~i~t~D~eL~~~~r~~~~~~eG~~ty---gg~~grd~~alAv--gl~E~~~---~~y~~~ri~~~~~l~~  330 (460)
T PRK13237        260 KDCLVNIG-GFLAMNDEELFDEAKELVVVYEGMPSY---GGMAGRDMEAMAI--GIEESVQ---YEYIEHRVGQVRYLGE  330 (460)
T ss_pred             CCCCCCCc-eEEEECCHHHHHHHHHhccccCCCcCC---CChhhhHHHHHHh--HHHhhch---HHHHHHHHHHHHHHHH
Confidence            99999874 66777776554433211   0111111   1111344433332  2332111   2666777788999999


Q ss_pred             HHhCCCCeEEEcCCCeeEEEEE
Q 048438          149 LVSGDKRFEVVFPCHFAVVCFR  170 (239)
Q Consensus       149 ~l~~~~g~~~~~~~~~~iv~f~  170 (239)
                      .|.+. |+.++.|....-|.+.
T Consensus       331 ~L~~~-Gvpv~~p~ggH~v~vd  351 (460)
T PRK13237        331 KLLAA-GVPIVEPVGGHAVFLD  351 (460)
T ss_pred             HHHHC-CCceecCCCceEEEEE
Confidence            99885 9999877554444443

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=99.02  E-value=1.8e-08  Score=88.26  Aligned_cols=191  Identities=12%  Similarity=0.069  Sum_probs=108.7

Q ss_pred             cEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcc-cccccCCCCCcceEEEcCcccCCCcc-
Q 048438            5 PLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPE-FRHFIDGVEGADSFSLNAHKWFFATL-   78 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~-~~~~~~~~~~~Ds~~~~~hK~l~~P~-   78 (239)
                      +.+|++....+.+|.+.|    +++|.++|++||+++++|.+|++. -.... +.....++ ..|.++++  |++.+-. 
T Consensus       188 ~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~-g~~g~~~~~~~~g~-~~D~~~~~--K~l~gg~~  263 (401)
T PRK00854        188 TVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGL-GRTGKLLAEEHEGI-EADVTLIG--KALSGGFY  263 (401)
T ss_pred             eEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCC-CCCchHhHHhhcCC-CCCEEEec--ccccCCcc
Confidence            467888888899999887    999999999999999999999732 11111 10012233 37888875  9987542 


Q ss_pred             cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 048438           79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEV  158 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~  158 (239)
                      ..|.+..+ ++.+.......      ...++ ++.+........+|+.+..   ++..++..++++++.+.|++. +...
T Consensus       264 ~ig~v~~~-~~~~~~l~~~~------~~~t~-~~~~~~~aa~~a~L~~l~~---~~~~~~~~~~~~~l~~~L~~~-~~~~  331 (401)
T PRK00854        264 PVSAVLSN-SEVLGVLKPGQ------HGSTF-GGNPLACAVARAALKVLTE---EGMIENAAEMGAYFLEGLRSI-RSNI  331 (401)
T ss_pred             CeEEEEEc-HHHHhcccCCC------CCCCC-CcCHHHHHHHHHHHHHHHH---cCHHHHHHHHHHHHHHHHHhh-ccCc
Confidence            35555553 33332221100      00011 1112222333334444322   224566678889999999876 3222


Q ss_pred             Ec--CCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCC
Q 048438          159 VF--PCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTE  236 (239)
Q Consensus       159 ~~--~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~  236 (239)
                      +.  .+...++.|.+.+..                      .....+.+.|.++|... .   ..+..++|++++...|+
T Consensus       332 ~~~~~g~g~~~~i~~~~~~----------------------~~~~~~~~~L~~~GV~v-~---~~~~~~lR~~p~~~~t~  385 (401)
T PRK00854        332 VREVRGRGLMLAVELEPEA----------------------GGARQYCEALKERGLLA-K---DTHDHTIRLAPPLVITR  385 (401)
T ss_pred             eEEEeccceEEEEEEecCc----------------------hhHHHHHHHHHHCCeEE-e---cCCCCEEEEeCCcccCH
Confidence            21  233456666654321                      11236677777776553 2   22446899998776665


Q ss_pred             c
Q 048438          237 E  237 (239)
Q Consensus       237 ~  237 (239)
                      +
T Consensus       386 e  386 (401)
T PRK00854        386 E  386 (401)
T ss_pred             H
Confidence            4

>PRK05764 aspartate aminotransferase; Provisional

Probab=98.99  E-value=2.3e-08  Score=87.25  Aligned_cols=197  Identities=16%  Similarity=0.097  Sum_probs=109.0

Q ss_pred             EEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcc---cccccCCCCCcceEEEcCcccCCCccc
Q 048438            6 LFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPE---FRHFIDGVEGADSFSLNAHKWFFATLD   79 (239)
Q Consensus         6 ~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~---~~~~~~~~~~~Ds~~~~~hK~l~~P~g   79 (239)
                      -+|+++.-+|.+|.+.|   +++|+++|++||+++++|.+|+.....-..   ......+...-+.+..++.|.++.| |
T Consensus       166 ~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~-G  244 (393)
T PRK05764        166 KALILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAYAMT-G  244 (393)
T ss_pred             eEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEecCcccccCc-c
Confidence            35566777889999855   889999999999999999998754321111   1111112223567888999998655 4


Q ss_pred             --ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 048438           80 --CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNY--GMENLRHFLRSHVNMARLFERLVSGDKR  155 (239)
Q Consensus        80 --~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--g~~g~~~~~~~~~~la~~l~~~l~~~~g  155 (239)
                        +|.++. +++++......          ..........+..+.+.+.+  ..+.+++..++..+..+++.+.|++.+|
T Consensus       245 ~RiG~i~~-~~~~~~~~~~~----------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g  313 (393)
T PRK05764        245 WRLGYAAG-PKELIKAMSKL----------QSHSTSNPTSIAQYAAVAALNGPQDEVEEMRQAFEERRDLMVDGLNEIPG  313 (393)
T ss_pred             ceeEEEec-CHHHHHHHHHH----------HhhcccCCChHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence              566664 34433322110          00000011123333333333  2344455566667788889999998878


Q ss_pred             eEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHh-cCcEEEEEEEECCEeEEEEEecC
Q 048438          156 FEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINA-SGKAYMTNVVLGGIYAIRFATGA  232 (239)
Q Consensus       156 ~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~~g~~~lR~~~~~  232 (239)
                      +++..+.....+.+.+++...              ..    ..-..++.+.+.+ .|..+.+........++|+++..
T Consensus       314 ~~~~~~~g~~~~~~~~~~~~~--------------~~----~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~vRis~~~  373 (393)
T PRK05764        314 LECPKPEGAFYVFPNVSKLLG--------------KS----ITDSLEFAEALLEEAGVAVVPGIAFGAPGYVRLSYAT  373 (393)
T ss_pred             CcccCCCcceEEEEecccccc--------------cc----cCCHHHHHHHHHHhCCEEEccccccCCCCEEEEEecC
Confidence            887644333344445543210              00    0001255556654 45554443333335789999875

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=98.95  E-value=1.8e-08  Score=87.55  Aligned_cols=150  Identities=18%  Similarity=0.318  Sum_probs=101.8

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhC-CEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ce
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFG-IWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CC   81 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~g-i~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g   81 (239)
                      +-+|.+-.-+|.+..+.||++|+++||++| ++++||.+++.+...-+     +. . +||+++.|+.|++.+...  .|
T Consensus       141 t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp~~~~p-----L~-~-GaDivv~S~TKyl~Ghsdv~~G  213 (386)
T PF01053_consen  141 TKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATPYNQNP-----LE-L-GADIVVHSATKYLSGHSDVMGG  213 (386)
T ss_dssp             EEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHTTTC-G-----GG-G-T-SEEEEETTTTTTTSSSE-EE
T ss_pred             ceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccceeeecc-----Cc-C-CceEEEeeccccccCCcceeeE
Confidence            457778888899999999999999999999 99999999987744222     11 1 499999999999986643  56


Q ss_pred             EEEeeC-cccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE-EE
Q 048438           82 CLWATN-PEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE-VV  159 (239)
Q Consensus        82 ~l~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~-~~  159 (239)
                      ++.++. ..+......          +....|....+...|..++  |.+.+.-|++++.+.|..+.+.|++.|.++ |.
T Consensus       214 ~vv~~~~~~~~~~l~~----------~~~~~G~~~~p~da~ll~r--gl~Tl~~R~~~~~~nA~~lA~~L~~hp~V~~V~  281 (386)
T PF01053_consen  214 AVVVNGSSELYDRLRE----------FRRLLGATLSPFDAWLLLR--GLRTLPLRMERQNENAEALAEFLEEHPKVKRVY  281 (386)
T ss_dssp             EEEESSHHHHHHHHHH----------HHHHHT-B--HHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHHTSTTEEEEE
T ss_pred             EEEECchhhhhhhhcc----------hhhhcCccchHHHHHHHhc--CCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEE
Confidence            666554 233222110          1111222334566666665  567788999999999999999999999987 44


Q ss_pred             cC-----C-----------CeeEEEEEEcC
Q 048438          160 FP-----C-----------HFAVVCFRVSP  173 (239)
Q Consensus       160 ~~-----~-----------~~~iv~f~~~~  173 (239)
                      .|     |           ..++++|.+++
T Consensus       282 yPgl~s~p~~~~~~~~~~g~ggl~sf~l~~  311 (386)
T PF01053_consen  282 YPGLPSHPQHELAKRQMSGGGGLLSFELKG  311 (386)
T ss_dssp             ETTSTTSTTHHHHHHHCSSCTSEEEEEESS
T ss_pred             EcccccccceeeeeecccccCceeEEEecc
Confidence            33     1           13699999987

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>TIGR00474 selA seryl-tRNA(sec) selenium transferase

Probab=98.95  E-value=3.6e-09  Score=93.59  Aligned_cols=82  Identities=11%  Similarity=0.109  Sum_probs=56.5

Q ss_pred             cEEEEEecCCCC--cc--cccChhHHHHHHHHhCCEEEEecccccc---------cccCcccccccCCCCCcceEEEcCc
Q 048438            5 PLFLCATIGTTA--IT--AVDPLKPLCDVAKQFGIWVHVDAAYAGS---------ACIFPEFRHFIDGVEGADSFSLNAH   71 (239)
Q Consensus         5 p~~vv~t~gtt~--~G--~i~pl~~i~~i~~~~gi~lhvD~A~~~~---------~~~~~~~~~~~~~~~~~Ds~~~~~h   71 (239)
                      +-+|+.++.++.  .|  .+.|+++|+++||+||++++||++.|..         ..+..  .. ... .++|++++|+|
T Consensus       212 T~lv~~~h~sN~~~~G~~~~~dl~~I~~la~~~g~~vivD~~sG~l~~~~~~gl~~~p~~--~~-~~~-~GaDiv~fSg~  287 (454)
T TIGR00474       212 TALLLKVHTSNYRIVGFTEEVSIAELVALGREHGLPVMEDLGSGSLVDLSRYGLPDEPTV--QE-VIA-AGVDLVTFSGD  287 (454)
T ss_pred             CEEEEEEccCcccccCCCCCCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCccc--cc-HhH-cCCCEEEecCc
Confidence            345566666654  56  5889999999999999999999864321         11110  00 111 25999999999


Q ss_pred             ccCCCcccceEEEeeCccccc
Q 048438           72 KWFFATLDCCCLWATNPEYLK   92 (239)
Q Consensus        72 K~l~~P~g~g~l~~~~~~~l~   92 (239)
                      ||+++|. +|+++.++ +++.
T Consensus       288 K~LgGp~-~G~i~g~~-~~i~  306 (454)
T TIGR00474       288 KLLGGPQ-AGIIVGKK-ELIE  306 (454)
T ss_pred             cccCCCe-EEEEEECH-HHHH
Confidence            9999995 78888754 4443

In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=98.95  E-value=7.1e-08  Score=84.56  Aligned_cols=193  Identities=11%  Similarity=0.027  Sum_probs=105.8

Q ss_pred             EEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-ccc
Q 048438            6 LFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-LDC   80 (239)
Q Consensus         6 ~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~   80 (239)
                      .+|++-...+++|.+.|    +++|.++|++||+++++|.+|.+.......+.....++ ..|.++++  |.+.+. ..+
T Consensus       188 ~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G~~~~~~~~~~-~~di~~~g--K~l~~g~~~i  264 (401)
T TIGR01885       188 CAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGKLLCVDHENV-KPDIVLLG--KALSGGVYPV  264 (401)
T ss_pred             EEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHHhhcCC-CCCEEEee--ccccCCCCCc
Confidence            35555555667799888    99999999999999999999854211111000002233 37888775  998753 235


Q ss_pred             eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc
Q 048438           81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF  160 (239)
Q Consensus        81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~  160 (239)
                      |+++.+ ++........   .   ...+. .+.+........+++.+..+.+   .++..++++++.+.|+++ +..++.
T Consensus       265 g~v~~~-~~i~~~~~~~---~---~~~t~-~~~p~~~~aa~a~L~~i~~~~l---~~~~~~~~~~~~~~L~~l-~~~~~~  332 (401)
T TIGR01885       265 SAVLAD-DDVMLTIKPG---E---HGSTY-GGNPLACAVAVAALEVLEEEKL---AENAEKLGEIFRDQLKKL-PKPIIT  332 (401)
T ss_pred             EEEEEc-HHHHhhccCC---C---CCCCC-CCCHHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHHHHhc-cCCcee
Confidence            555553 3333222110   0   00111 1222333334445555543333   345668899999999886 323322


Q ss_pred             --CCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCCc
Q 048438          161 --PCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTEE  237 (239)
Q Consensus       161 --~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~  237 (239)
                        .....+..+.++...                .    .....++.+.|.++|... .+   .+...+|++++...|++
T Consensus       333 ~~~g~g~~~~i~~~~~~----------------~----~~~~~~l~~~l~~~Gv~v-~~---~~~~~lRi~p~l~~t~~  387 (401)
T TIGR01885       333 EVRGRGLLNAIVIDESK----------------T----GRTAWDLCLKLKEKGLLA-KP---THGNIIRLAPPLVITEE  387 (401)
T ss_pred             EEeecCeeEEEEeccCc----------------c----hhHHHHHHHHHHhCCEEE-Ee---cCCCEEEEeCCccCCHH
Confidence              123345554554321                0    012346777887776554 32   24568999987555543

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=98.94  E-value=3.5e-08  Score=86.87  Aligned_cols=160  Identities=15%  Similarity=0.141  Sum_probs=101.4

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc-ceEE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD-CCCL   83 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g-~g~l   83 (239)
                      +-+|++...++.++.+.|+++|+++||++|+++++|.+++.+.+.-+     ++  -+||.++.|..||++++.+ .|.+
T Consensus       148 Tk~I~~e~pgnP~~~v~Di~~I~~iA~~~gi~livD~T~~tP~~~~p-----l~--~GADIvv~S~TKy~~Ghsd~l~G~  220 (432)
T PRK06702        148 TKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVDNTLATPYLCQA-----FE--HGANIIVHSTTKYIDGHASSLGGI  220 (432)
T ss_pred             CeEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEECCCCchhhCCh-----hh--cCCCEEEEccccccCCCcceeceE
Confidence            34666777889999999999999999999999999999875433211     11  1499999999999988754 2222


Q ss_pred             EeeCcc--cccccccC----CCCccC------C----------CCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHH
Q 048438           84 WATNPE--YLKNKATE----SKPVVD------Y----------KDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVN  141 (239)
Q Consensus        84 ~~~~~~--~l~~~~~~----~~~~~~------~----------~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~  141 (239)
                      .+....  +.......    ......      .          ..+....+....+...|..++  |.+.+..++++..+
T Consensus       221 v~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~sp~~a~l~~r--gL~Tl~lR~~r~~~  298 (432)
T PRK06702        221 VIDGGNFDWTNGKYPELVEPDPSYHGVSYVQNFGAAAYIVKARVQLLRDYGNCMSPFNAYISNI--GLETLHLRMERHSE  298 (432)
T ss_pred             EEeCCCcccccccccccccccccccccchhhccchhhHHHHHHHHHHHHccCCCCHHHHHHHHh--ccCcHHHHHHHHHH
Confidence            222111  11100000    000000      0          000001122344556665555  45678889999999


Q ss_pred             HHHHHHHHHhCCCCeEEEcCC------------------CeeEEEEEEcC
Q 048438          142 MARLFERLVSGDKRFEVVFPC------------------HFAVVCFRVSP  173 (239)
Q Consensus       142 la~~l~~~l~~~~g~~~~~~~------------------~~~iv~f~~~~  173 (239)
                      ++..+.+.|++.|.++-+..|                  ..++++|.+++
T Consensus       299 Na~~la~~L~~~p~V~~V~yPgl~~~p~~~l~~~~~~~g~gg~~sf~l~~  348 (432)
T PRK06702        299 NALAVAKWLADHERIEWVNYPGLDSNENYSLAQKYLKKGASGVLTFGIKG  348 (432)
T ss_pred             HHHHHHHHHHhCCCcceEECCCCCCCccHHHHHHhCcCCCceEEEEEecC
Confidence            999999999999987644321                  13699999974

>PRK07908 hypothetical protein; Provisional

Probab=98.93  E-value=3.8e-08  Score=84.62  Aligned_cols=183  Identities=16%  Similarity=0.099  Sum_probs=108.7

Q ss_pred             EEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEE-cCcccCC-CcccceEE
Q 048438            6 LFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSL-NAHKWFF-ATLDCCCL   83 (239)
Q Consensus         6 ~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~-~~hK~l~-~P~g~g~l   83 (239)
                      -+++++.-+|.||.+.|.++|.++|+ ++.++++|.+|+-.. ... ... +...+.-+++++ +++|.++ ...-+|++
T Consensus       141 ~~i~l~np~NPTG~~~~~~~l~~l~~-~~~~iIvDe~y~~~~-~~~-~~~-l~~~~~~~~i~i~S~SK~~~l~GlRiG~~  216 (349)
T PRK07908        141 DLVVIGNPTNPTSVLHPAEQLLALRR-PGRILVVDEAFADAV-PGE-PES-LAGDDLPGVLVLRSLTKTWSLAGLRVGYA  216 (349)
T ss_pred             CEEEEcCCCCCCCCCcCHHHHHHHHh-cCCEEEEECcchhhc-cCC-ccc-cccccCCCEEEEeecccccCCccceeeee
Confidence            36667888999999999999999996 488999999986421 111 111 111122345555 9999765 22336888


Q ss_pred             EeeCcccccccccCCCCccCCCCceecCCCCCChHHHHH--H-HHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc
Q 048438           84 WATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWF--V-IRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF  160 (239)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~  160 (239)
                      +. +++.+.......      ..+.      ..+.....  . ++....+-+++..++..+..+++.+.|++. ++++..
T Consensus       217 ~~-~~~~~~~~~~~~------~~~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-~~~~~~  282 (349)
T PRK07908        217 LG-APDVLARLTRGR------AHWP------VGTLQLEAIAACCAPRAVAEAAADAARLAADRAEMVAGLRAV-GARVVD  282 (349)
T ss_pred             ec-CHHHHHHHHhcC------CCCC------ccHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhC-CcEecc
Confidence            86 344443322100      0011      11111111  1 111122344566677778888899999887 888776


Q ss_pred             CCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEEC--CEeEEEEEecC
Q 048438          161 PCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLG--GIYAIRFATGA  232 (239)
Q Consensus       161 ~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~--g~~~lR~~~~~  232 (239)
                      ++..+.+.+++++.                          ..+.+.|.++|..+.......  +..++|+++.+
T Consensus       283 p~~g~~~~~~~~~~--------------------------~~~~~~l~~~gI~v~~g~~f~~~~~~~vRis~~~  330 (349)
T PRK07908        283 PAAAPFVLVRVPDA--------------------------ELLRKRLRERGIAVRRGDTFPGLDPDYLRLAVRP  330 (349)
T ss_pred             CCCceEEEEECCcH--------------------------HHHHHHHHhCCEEEEECCCCCCCCCCeEEEEeCC
Confidence            67777777776531                          145556666666655444332  35799999864

>PRK10534 L-threonine aldolase; Provisional

Probab=98.93  E-value=1.4e-08  Score=86.63  Aligned_cols=178  Identities=16%  Similarity=0.085  Sum_probs=96.6

Q ss_pred             cEEEEEecCCCCcccccChhHH---HHHHHHhCCEEEEecccccccccC-c-ccccccCCCCCcceEEEcCcccCCCccc
Q 048438            5 PLFLCATIGTTAITAVDPLKPL---CDVAKQFGIWVHVDAAYAGSACIF-P-EFRHFIDGVEGADSFSLNAHKWFFATLD   79 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i---~~i~~~~gi~lhvD~A~~~~~~~~-~-~~~~~~~~~~~~Ds~~~~~hK~l~~P~g   79 (239)
                      +-+|++.  ++.+|.+.|.++|   +++|++|+++++||.||..+.... . ... .+.  ...|.++.+++|.++.+  
T Consensus       130 ~~lv~l~--np~~G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~~~~-~~~--~~~~~~~~s~SK~~~~~--  202 (333)
T PRK10534        130 TRLLSLE--NTHNGKVLPREYLKQAWEFTRERNLALHVDGARIFNAVVAYGCELK-EIT--QYCDSFTICLSKGLGTP--  202 (333)
T ss_pred             ceEEEEe--cCCCCeecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHHHHcCCCHH-HHH--hcCCEEEEEeEcCCCCc--
Confidence            3344443  4557999887665   567899999999999976432100 1 110 011  12577778999987766  


Q ss_pred             ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Q 048438           80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVV  159 (239)
Q Consensus        80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~  159 (239)
                      .|.+.+.+++.+......    ..  .+.  .+-...++....++..+  +...+.+++..+.++++.+.|++. |+++.
T Consensus       203 ~G~~~~~~~~~i~~~~~~----~~--~~~--~~~~~~~~~~a~~~~~l--~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~  271 (333)
T PRK10534        203 VGSLLVGNRDYIKRARRW----RK--MTG--GGMRQAGILAAAGLYAL--KHNVARLQEDHDNAAWLAEQLREA-GADVM  271 (333)
T ss_pred             ccceEEcCHHHHHHHHHH----HH--HhC--CchhhHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhC-CCccC
Confidence            454344455554332210    00  000  00011111122222222  112344444555678899999986 88865


Q ss_pred             cCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEec
Q 048438          160 FPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATG  231 (239)
Q Consensus       160 ~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~  231 (239)
                       ++..|.+.+++++.                      +  ...+.+.|.++|.+....      ..+|++.+
T Consensus       272 -~~~~nfv~~~~~~~----------------------~--~~~~~~~l~~~gi~v~~~------~~~rl~~~  312 (333)
T PRK10534        272 -RQDTNMLFVRVGEE----------------------Q--AAALGEYMRERNVLINAS------PIVRLVTH  312 (333)
T ss_pred             -CCCceEEEEECCch----------------------h--HHHHHHHHHHcCeeecCC------ceEEEEEE
Confidence             45788888887531                      1  125566777777665332      24688764

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=98.91  E-value=4.9e-08  Score=84.71  Aligned_cols=189  Identities=12%  Similarity=0.014  Sum_probs=104.4

Q ss_pred             cEEEEEecCCCCccccc----ChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438            5 PLFLCATIGTTAITAVD----PLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC   80 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~----pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~   80 (239)
                      +-+|+.+...+.+|...    ++++|.++|+++|+++++|.+|+..............++ ..|.++  ++|.+++...+
T Consensus       171 ~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~~~~~~~~~~-~~d~~t--~sK~~~~G~ri  247 (379)
T TIGR00707       171 TAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKFFAYEHYGI-EPDIIT--LAKGLGGGVPI  247 (379)
T ss_pred             eeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhhHHhcCC-CCCEEE--EcccccCCccc
Confidence            34566676666677543    389999999999999999999973211100000001122 256654  58999865668


Q ss_pred             eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE-
Q 048438           81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVV-  159 (239)
Q Consensus        81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~-  159 (239)
                      |+++.. ++.+.......    ....+   ....+.......+++.+...   +..++..++.++++++|++. +.+.. 
T Consensus       248 G~~~~~-~~~~~~~~~~~----~~~~~---~~~~~~~~aa~aaL~~~~~~---~~~~~~~~~~~~~~~~l~~~-~~~~~~  315 (379)
T TIGR00707       248 GATLAK-EEVAEAFTPGD----HGSTF---GGNPLACAAALAVLEVIEKE---RLLENVKEKGDYFKERLEEL-GKNYPN  315 (379)
T ss_pred             EEEEEc-HHHHhhhcCCC----CCCCC---CCCHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHH-HhhCCC
Confidence            887763 34433322100    00001   11122233344455544322   34556667888888887764 22211 


Q ss_pred             c--CCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCCc
Q 048438          160 F--PCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTEE  237 (239)
Q Consensus       160 ~--~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~  237 (239)
                      .  ++..+++.+.+++.                         ...+.++|.++|.....    .+..++|++++...|++
T Consensus       316 ~~~~~~g~~~~~~~~~~-------------------------~~~~~~~l~~~Gv~v~~----~~~~~lRi~~~~~~t~~  366 (379)
T TIGR00707       316 KEVRGKGLMLGIELEAP-------------------------CKDIVKKALEKGLLVNC----AGPKVLRFLPPLIITKE  366 (379)
T ss_pred             CccccCceEEEEEecCc-------------------------HHHHHHHHHHCCcEEee----CCCCEEEEECCCcCCHH
Confidence            1  12345666766431                         13667777777766543    24468999987666654

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>PLN02624 ornithine-delta-aminotransferase

Probab=98.90  E-value=1.5e-07  Score=84.20  Aligned_cols=196  Identities=10%  Similarity=0.012  Sum_probs=105.7

Q ss_pred             ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-c
Q 048438            4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-L   78 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~   78 (239)
                      ...+|++....+++|.+.|    +++|.++|++||+++++|.+|.+.......+.....++ ..|.++++  |.+++. .
T Consensus       224 ~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG~~~a~~~~~i-~pDiv~ls--K~lggG~~  300 (474)
T PLN02624        224 RIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKMLACDWEEV-RPDVVILG--KALGGGVI  300 (474)
T ss_pred             CEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCcchhhHHhcCC-CCCEEEec--ccccCCCC
Confidence            3556777777788999888    99999999999999999999974211111111012344 38988874  988765 3


Q ss_pred             cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC----C
Q 048438           79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD----K  154 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~----~  154 (239)
                      .+|.++.+. +++.......      ...++ ++.+.......++++.+..++   ..++..++.+++++.|+++    +
T Consensus       301 pigav~~~~-~i~~~~~~~~------~~~T~-~g~pl~~aaa~aaLe~l~~~~---l~~~~~~~~~~l~~~L~~l~~~~~  369 (474)
T PLN02624        301 PVSAVLADK-DVMLCIKPGE------HGSTF-GGNPLASAVAMAALQVVQDEK---LAERSAKLGQELRDQLQKIQKQFP  369 (474)
T ss_pred             cceeeeecH-HHHhHhccCC------cCCCC-CCCHHHHHHHHHHHHHHHhch---HHHHHHHHHHHHHHHHHHHHHhCC
Confidence            567666643 3332221100      00011 122222233333454443333   3334456667777766553    2


Q ss_pred             C-eEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCC
Q 048438          155 R-FEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGAT  233 (239)
Q Consensus       155 g-~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~  233 (239)
                      . +.-+ .....++.+.+.....               .    ......+.+.|.++|.+.. +   .+..+||+++...
T Consensus       370 ~~i~~v-rg~G~~~~i~l~~~~~---------------~----~~~a~~~~~~L~e~GV~v~-p---~~~~~lR~~p~l~  425 (474)
T PLN02624        370 KLIKEV-RGRGLLNAVVLNSPKL---------------G----PVSAYDVCLKLKERGLLAK-P---THDTIIRLAPPLS  425 (474)
T ss_pred             CceEEE-EeeEEEEEEEecCCCc---------------C----hHHHHHHHHHHHhCCeEEe-c---CCCCEEEEECCcc
Confidence            1 2111 1223355555532110               0    1223467777877775543 2   2567899997655


Q ss_pred             CCCc
Q 048438          234 LTEE  237 (239)
Q Consensus       234 ~t~~  237 (239)
                      .|++
T Consensus       426 ~t~e  429 (474)
T PLN02624        426 ISED  429 (474)
T ss_pred             CCHH
Confidence            5543

>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=98.88  E-value=3.9e-08  Score=84.78  Aligned_cols=194  Identities=18%  Similarity=0.110  Sum_probs=114.6

Q ss_pred             cEEEEEecCCCCcccccChhHHHHH---HHHhCCEEEEecccccccccCccc---ccccCCCCCcc-eEEEcCcccCCCc
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDV---AKQFGIWVHVDAAYAGSACIFPEF---RHFIDGVEGAD-SFSLNAHKWFFAT   77 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i---~~~~gi~lhvD~A~~~~~~~~~~~---~~~~~~~~~~D-s~~~~~hK~l~~P   77 (239)
                      +.+|+.+...+.||..-+.+++.++   |++||+++++|.+|+.....-...   ...+..  ..+ .++.|+.|.++.|
T Consensus       149 ~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~--~~~vi~~~S~SK~~g~~  226 (363)
T PF00155_consen  149 PKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLIFGDPDFGPIRSLLDE--DDNVIVVGSLSKSFGLP  226 (363)
T ss_dssp             EEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSSHTHHHHGHHTT--TSTEEEEEESTTTTTSG
T ss_pred             cceeeecccccccccccccccccchhhhhcccccceeeeeceeccccCCCccCcccccccc--cccceeeeecccccccc
Confidence            5677777778999998776555555   999999999999998765542211   111222  233 7888999998766


Q ss_pred             c-cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHHhCCC
Q 048438           78 L-DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYG--MENLRHFLRSHVNMARLFERLVSGDK  154 (239)
Q Consensus        78 ~-g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g--~~g~~~~~~~~~~la~~l~~~l~~~~  154 (239)
                      . -.|++++ ++.........         .............+...+..-+  .+-++++.++..+..+++.+.|++. 
T Consensus       227 GlRvG~i~~-~~~~~~~l~~~---------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-  295 (363)
T PF00155_consen  227 GLRVGYIVA-PPELIERLRRF---------QRSGLSSSPMQAAAAAALSDPELVEKWLEELRERLRENRDLLREALEEI-  295 (363)
T ss_dssp             GGTEEEEEE-EHHHHHHHHHH---------HHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             ccccccccc-hhhhhhhhhhc---------cccccccchhhHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHHh-
Confidence            2 3677777 44443322210         0000010011111122222222  1255677788888999999999887 


Q ss_pred             CeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhc-CcEEEEEEEECCEeEEEEEecCC
Q 048438          155 RFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINAS-GKAYMTNVVLGGIYAIRFATGAT  233 (239)
Q Consensus       155 g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~g~~~lR~~~~~~  233 (239)
                      ++.+..++ .+++.+...+.                       .....+.+.|.++ |....+........++|+++ +.
T Consensus       296 ~~~~~~~~-~~~~~~~~~~~-----------------------~~~~~l~~~L~~~~gi~v~pg~~~~~~~~iRi~~-a~  350 (363)
T PF00155_consen  296 GITVLPPE-AGFFLWVRLDP-----------------------NDAEELAQELLEEYGILVRPGSYFGVPGYIRISL-AS  350 (363)
T ss_dssp             TSEEEHHS-BSSEEEEEESH-----------------------HHHHHHHHHHHHHHTEEEEEGGGGTSTTEEEEEG-GC
T ss_pred             hhheeecc-CccEEEEEccc-----------------------chHHHHHHHHHHhCCEEEEecCCCCCCCEEEEEe-cc
Confidence            99988655 66666654431                       1234677778777 76655544433467899998 44


Q ss_pred             CCC
Q 048438          234 LTE  236 (239)
Q Consensus       234 ~t~  236 (239)
                      .++
T Consensus       351 ~~~  353 (363)
T PF00155_consen  351 HSE  353 (363)
T ss_dssp             SCH
T ss_pred             CCH
Confidence            443

On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....

>PRK06358 threonine-phosphate decarboxylase; Provisional

Probab=98.88  E-value=1e-07  Score=82.16  Aligned_cols=189  Identities=11%  Similarity=0.035  Sum_probs=109.6

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcc--eEEEcCcccCCCc-c
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGAD--SFSLNAHKWFFAT-L   78 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~D--s~~~~~hK~l~~P-~   78 (239)
                      +-+|+++.-+|.||.+.+   +.+|.++|++|++++++|.++.-....-. .......++..+  .+..|+.|.++.| .
T Consensus       142 ~~~v~~~~P~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~-~~~~~~~~~~~~~vi~~~S~SK~~gl~G~  220 (354)
T PRK06358        142 IDLVFLCNPNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENE-TISMINYLENFKNLIIIRAFTKFFAIPGL  220 (354)
T ss_pred             CCEEEEeCCCCCCCCccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCcc-chhHHHhccCCCCEEEEEechhhccCcch
Confidence            445566777899999887   78888889999999999999864332111 001011111111  5677999998733 4


Q ss_pred             cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438           79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGME-NLRHFLRSHVNMARLFERLVSGDKRFE  157 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-g~~~~~~~~~~la~~l~~~l~~~~g~~  157 (239)
                      -+|+++..++.+........      ..+.      ...+..+.+...+... -+++..+...+..+++.+.|++.++++
T Consensus       221 RiG~lv~~~~~~~~~~~~~~------~~~~------~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~  288 (354)
T PRK06358        221 RLGYGLTSNKNLAEKLLQMR------EPWS------INTFADLAGQTLLDDKEYIKKTIQWIKEEKDFLYNGLSEFKGIK  288 (354)
T ss_pred             hheeeecCCHHHHHHHHHhC------CCCc------chHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence            47777654333322221100      0011      1122222333333322 235566666777888999998887877


Q ss_pred             EEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEEC--CEeEEEEEecCC
Q 048438          158 VVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLG--GIYAIRFATGAT  233 (239)
Q Consensus       158 ~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~--g~~~lR~~~~~~  233 (239)
                      +. ++..+-+.+++++.                          ..+.+.|.++|..........  +..++|+++..+
T Consensus       289 ~~-~~~g~f~~~~~~~~--------------------------~~~~~~l~~~gI~v~~~~~f~~~~~~~iRls~~~~  339 (354)
T PRK06358        289 VY-KPSVNFIFFKLEKP--------------------------IDLRKELLKKGILIRSCSNYRGLDENYYRVAVKSR  339 (354)
T ss_pred             Ec-CCcceEEEEEcCch--------------------------HHHHHHHHHCCeEEEECCCCCCCCCCEEEEEeCCH
Confidence            65 45666555555421                          256677777776655544442  346899998764

>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated

Probab=98.88  E-value=1e-08  Score=89.09  Aligned_cols=147  Identities=14%  Similarity=0.104  Sum_probs=81.6

Q ss_pred             ccEEEEEecCCCCcccc---cChhHHHHHHHHhCCEEEEecccccc-cccCccc---------ccccCC-CCCcceEEEc
Q 048438            4 IPLFLCATIGTTAITAV---DPLKPLCDVAKQFGIWVHVDAAYAGS-ACIFPEF---------RHFIDG-VEGADSFSLN   69 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i---~pl~~i~~i~~~~gi~lhvD~A~~~~-~~~~~~~---------~~~~~~-~~~~Ds~~~~   69 (239)
                      +++.......++.-|..   +.++++.++|++||+.+|+|||.-+. +..+.+.         +..... ...+|++++|
T Consensus       184 i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aDsvt~s  263 (467)
T TIGR02617       184 VPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYADMLAMS  263 (467)
T ss_pred             ceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCCEEEEE
Confidence            34433333333445654   55788899999999999999998663 3321110         001100 1469999999


Q ss_pred             CcccCCCcccceEEEeeCc---cccccccc---CCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHH
Q 048438           70 AHKWFFATLDCCCLWATNP---EYLKNKAT---ESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMA  143 (239)
Q Consensus        70 ~hK~l~~P~g~g~l~~~~~---~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la  143 (239)
                      +.|.+++|.|. ++..+++   +.......   ...+...|   .--.+|...+++  ..|+..   --++.+++.....
T Consensus       264 lsKglgApvGg-~Lag~d~~~~~l~~~~~~~~i~~EGf~tY---GGlagrd~ea~a--~Gl~e~---~~~~yl~~ri~qv  334 (467)
T TIGR02617       264 AKKDAMVPMGG-LLCFKDDSFFDVYTECRTLCVVQEGFPTY---GGLEGGAMERLA--VGLYDG---MNLDWLAYRINQV  334 (467)
T ss_pred             cCCCCCCcccc-eEEecchhHHHHHHHHHhhcccccCCcCc---CchhHHHHHHHH--hhhhhc---ccHHHHHHHHHHH
Confidence            99999999874 4555554   22222111   00011111   111123333332  123322   1245666667788


Q ss_pred             HHHHHHHhCCCCeEEEc
Q 048438          144 RLFERLVSGDKRFEVVF  160 (239)
Q Consensus       144 ~~l~~~l~~~~g~~~~~  160 (239)
                      +||.++|.+. |+.++.
T Consensus       335 ~yl~~~L~~~-Gvpi~~  350 (467)
T TIGR02617       335 QYLVNGLEEI-GVVCQQ  350 (467)
T ss_pred             HHHHHHHHhC-CCcEEe
Confidence            8999999885 887765

Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.

>PRK05957 aspartate aminotransferase; Provisional

Probab=98.86  E-value=9.9e-08  Score=83.30  Aligned_cols=195  Identities=13%  Similarity=0.083  Sum_probs=107.0

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccc--cCCCCCcceEEEcCcccCCCccc
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--IDGVEGADSFSLNAHKWFFATLD   79 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~~~~~~~Ds~~~~~hK~l~~P~g   79 (239)
                      +-+|++++.+|.||.+.|   +++|+++|+++|+++++|.+++-....-......  ..+...--+++.++.|.++ +.|
T Consensus       161 ~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g-~~G  239 (389)
T PRK05957        161 TRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYG-FAS  239 (389)
T ss_pred             ceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcEEEEecchhhcc-Ccc
Confidence            456777888999999988   8899999999999999999987432211000000  1011112356778899864 445


Q ss_pred             --ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 048438           80 --CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNY--GMENLRHFLRSHVNMARLFERLVSGDKR  155 (239)
Q Consensus        80 --~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--g~~g~~~~~~~~~~la~~l~~~l~~~~g  155 (239)
                        +|.+++. ++++....... ..     +.  .+.  ..+....+...+  +.+-+++..++..+..+++.+.|+++++
T Consensus       240 lRiG~~~~~-~~~~~~~~~~~-~~-----~~--~~~--~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~  308 (389)
T PRK05957        240 WRIGYMVIP-IHLLEAIKKIQ-DT-----IL--ICP--PVVSQYAALGALQVGKSYCQQHLPEIAQVRQILLKSLGQLQD  308 (389)
T ss_pred             ceeEEEecC-HHHHHHHHHHH-hh-----cc--cCC--CcHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence              7777763 33333221100 00     00  000  011112222222  2233556666667778888899988766


Q ss_pred             eEEEcCCCeeE-EEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHh-cCcEEEEEEEE--CCEeEEEEEec
Q 048438          156 FEVVFPCHFAV-VCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINA-SGKAYMTNVVL--GGIYAIRFATG  231 (239)
Q Consensus       156 ~~~~~~~~~~i-v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~--~g~~~lR~~~~  231 (239)
                      +..+.+++.+. +.+++++. .                    +  ...+.++|.+ .|..+.+....  .+..++|+++.
T Consensus       309 ~~~~~~~~gg~~~~~~~~~~-~--------------------~--~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~  365 (389)
T PRK05957        309 RCTLHPANGAFYCFLKVNTD-L--------------------N--DFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYG  365 (389)
T ss_pred             CccccCCCeeEEEEEeCCCC-C--------------------C--hHHHHHHHHHHCCEEEccchhhCCCCCCEEEEEEe
Confidence            43344555544 33455331 1                    1  1255666654 45554443332  23468999987


Q ss_pred             CCC
Q 048438          232 ATL  234 (239)
Q Consensus       232 ~~~  234 (239)
                      .++
T Consensus       366 ~~~  368 (389)
T PRK05957        366 ALQ  368 (389)
T ss_pred             cCC
Confidence            653

>PRK06225 aspartate aminotransferase; Provisional

Probab=98.84  E-value=8e-08  Score=83.55  Aligned_cols=192  Identities=13%  Similarity=0.086  Sum_probs=101.4

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--   79 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--   79 (239)
                      +-+|+++..+|.+|.+.+   +++|+++|+++|+++++|.++............ ..  .....+..+++|+++ +.|  
T Consensus       158 ~~~v~l~~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~-~~--~~~~i~~~s~SK~~g-~~G~R  233 (380)
T PRK06225        158 TRLIYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAREHTLAAE-YA--PEHTVTSYSFSKIFG-MAGLR  233 (380)
T ss_pred             ceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhccCCchhh-cC--CCCEEEEeechhhcC-Cccce
Confidence            345666677889999654   899999999999999999998532111100000 11  124566778899985 445  


Q ss_pred             ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Q 048438           80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVV  159 (239)
Q Consensus        80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~  159 (239)
                      +|+++.. +..+.......   .  ..+.   ............+.. ..+-+++..+...+..+.+.+.|++++++.+.
T Consensus       234 iG~i~~~-~~l~~~~~~~~---~--~~~~---~~~~~~~~a~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~  303 (380)
T PRK06225        234 IGAVVAT-PDLIEVVKSIV---I--NDLG---TNVIAQEAAIAGLKV-KDEWIDRIRRTTFKNQKLIKEAVDEIEGVFLP  303 (380)
T ss_pred             eEEEecC-HHHHHHHHHHH---h--cccC---CCHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHhCcCCccc
Confidence            6888764 34433321100   0  0000   001111111122222 11122333333445667788888887775432


Q ss_pred             -cCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEE---ECCEeEEEEEecC
Q 048438          160 -FPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVV---LGGIYAIRFATGA  232 (239)
Q Consensus       160 -~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~---~~g~~~lR~~~~~  232 (239)
                       .++..+++.+.+++.+.                    +  ...+.++|.++|........   ..+..++|+++..
T Consensus       304 ~~~~~g~~~~~~~~~~~~--------------------~--~~~l~~~l~~~gi~v~~g~~~~~~~~~~~iR~s~~~  358 (380)
T PRK06225        304 VYPSHGNMMVIDISEAGI--------------------D--PEDLVEYLLERKIFVRQGTYTSKRFGDRYIRVSFSI  358 (380)
T ss_pred             cCCCCCeEEEEEcccccC--------------------C--HHHHHHHHHHCCEEEcCCcccCcCCCCceEEEEeCC
Confidence             34556677776654211                    0  12456666666654333211   1245689999765

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.84  E-value=1.8e-07  Score=82.64  Aligned_cols=200  Identities=13%  Similarity=0.010  Sum_probs=107.7

Q ss_pred             cEEEEEec-CCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-c
Q 048438            5 PLFLCATI-GTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-L   78 (239)
Q Consensus         5 p~~vv~t~-gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~   78 (239)
                      ..+|++.- .....|.+-|    +++|.++|++||+++++|.+|.+.-....-+.....++. .|.++++  |++++. .
T Consensus       200 iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~v~-pDi~~~~--K~l~gG~~  276 (423)
T PRK05964        200 IAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGTLFACEQAGVS-PDIMCLS--KGLTGGYL  276 (423)
T ss_pred             EEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhHHHhcCCC-CCeeeee--hhhhcCcc
Confidence            34455544 2445566554    999999999999999999998643111110000123443 8887765  999776 4


Q ss_pred             cceEEEeeCcccccccccC-CCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438           79 DCCCLWATNPEYLKNKATE-SKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE  157 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~  157 (239)
                      ..|.++.+ ++........ ..... ....++ .+.+.......++++.+..+   +..++..++.+++.+.|+++.++.
T Consensus       277 p~~av~~~-~~i~~~~~~~~~~~~~-~~~~T~-~~np~~~aaa~a~l~~l~~~---~~~~~~~~~g~~l~~~l~~l~~~~  350 (423)
T PRK05964        277 PLAATLCT-AEIFEAFYSDDRAKAF-MHSPSY-TANPLACAAANASLDLFEDE---PVLERVAALSAGLAEGLEPFRDLP  350 (423)
T ss_pred             cceEEEEc-HHHHHhhhcCCccccc-ccCCCC-CcCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHhhccCC
Confidence            67776664 3333221110 00000 000010 11122223333344444333   345666688888888887653333


Q ss_pred             EEcC--CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCC
Q 048438          158 VVFP--CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLT  235 (239)
Q Consensus       158 ~~~~--~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t  235 (239)
                      .+.+  ....++.+.+.+..                .    ++....+.+.|.++|.+... .   + ..+|+++...+|
T Consensus       351 ~i~~vrg~Gl~~~i~l~~~~----------------~----~~~~~~l~~~l~~~Gv~v~~-~---~-~~lR~~p~l~~t  405 (423)
T PRK05964        351 GVADVRVLGAIGAVELDRPV----------------L----ERDGPALRAFALERGVLLRP-L---G-NTIYLMPPYIIT  405 (423)
T ss_pred             CeEEeecccEEEEEEeccCc----------------c----hhHHHHHHHHHHHCCeEEEe-c---C-CEEEEeCCcccC
Confidence            2222  23456677775421                0    12344677788888765432 1   2 479999887777


Q ss_pred             CcC
Q 048438          236 EER  238 (239)
Q Consensus       236 ~~~  238 (239)
                      ++|
T Consensus       406 ~ed  408 (423)
T PRK05964        406 AEE  408 (423)
T ss_pred             HHH
Confidence            654

>PRK04311 selenocysteine synthase; Provisional

Probab=98.84  E-value=1.8e-08  Score=89.39  Aligned_cols=85  Identities=13%  Similarity=0.139  Sum_probs=57.5

Q ss_pred             cEEEEEecCCCC--cc--cccChhHHHHHHHHhCCEEEEecccccccccCccc----ccccCC-C-CCcceEEEcCcccC
Q 048438            5 PLFLCATIGTTA--IT--AVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEF----RHFIDG-V-EGADSFSLNAHKWF   74 (239)
Q Consensus         5 p~~vv~t~gtt~--~G--~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~----~~~~~~-~-~~~Ds~~~~~hK~l   74 (239)
                      +-+|+.++.++.  +|  ...|+++|+++||+||++++||+++|.. .+...+    ...+.. + .++|++++|+|||+
T Consensus       217 TklV~~vh~sN~~i~G~~~~~dl~eI~~lak~~gi~vivD~gsG~l-~~~~~~gl~~~p~~~~~l~~GaDiv~fSg~K~L  295 (464)
T PRK04311        217 TALLLKVHTSNYRIEGFTKEVSLAELAALGKEHGLPVVYDLGSGSL-VDLSQYGLPDEPTVQELLAAGVDLVTFSGDKLL  295 (464)
T ss_pred             CeEEEEEcCCCccccccCCcCCHHHHHHHHHHcCCeEEEECCCccc-ccchhccCCCCCchhhHHhcCCcEEEecCcccc
Confidence            456667777764  55  5679999999999999999999964321 111000    001111 0 25999999999999


Q ss_pred             CCcccceEEEeeCccccc
Q 048438           75 FATLDCCCLWATNPEYLK   92 (239)
Q Consensus        75 ~~P~g~g~l~~~~~~~l~   92 (239)
                      ++|. +|+++.+ ++++.
T Consensus       296 gGp~-~G~i~g~-~~li~  311 (464)
T PRK04311        296 GGPQ-AGIIVGK-KELIA  311 (464)
T ss_pred             cCCc-eEEEEEc-HHHHH
Confidence            9995 7888875 34543

>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=98.83  E-value=2.7e-07  Score=77.43  Aligned_cols=167  Identities=13%  Similarity=0.140  Sum_probs=113.3

Q ss_pred             CccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceE
Q 048438            3 LIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCC   82 (239)
Q Consensus         3 ~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~   82 (239)
                      ++|-++|  +|++......|...+.+||.+.|+++.+|-||-.|.+......   .-.+.||+++.+.||.|-+|.|.-+
T Consensus       188 frPk~ii--aG~SaY~R~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~vip---sPFey~DiVTTTTHKsLRGPRg~mI  262 (477)
T KOG2467|consen  188 FRPKLII--AGTSAYSRLIDYARFRKIADKVGAYLMADMAHISGLVAAGVIP---SPFEYCDIVTTTTHKSLRGPRGAMI  262 (477)
T ss_pred             cCCcEEE--eccccchhhccHHHHHHHHHhcCceeehhhhhHHHHHhcccCC---CcccccceeeccccccccCCcceeE
Confidence            4566554  5788888899999999999999999999999876644322111   1124599999999999999998655


Q ss_pred             EEeeCcccccccccCCCCccCCC------C-ceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 048438           83 LWATNPEYLKNKATESKPVVDYK------D-WQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK  154 (239)
Q Consensus        83 l~~~~~~~l~~~~~~~~~~~~~~------~-~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~  154 (239)
                      ||-+...-..+.. .....+|+.      - -.+++|-. ....++..+|+.-..-.+.+..++..++++.|.+.|.+. 
T Consensus       263 FyRkGvk~~~~k~-g~~i~ydlE~kINfaVFP~lQGGPHNhtIaalAvALkQa~tpefk~Yq~qV~~Nakala~~l~~~-  340 (477)
T KOG2467|consen  263 FYRKGVKSIKPKQ-GKEILYDLEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKEYQKQVLKNAKALASALISR-  340 (477)
T ss_pred             EEeccCCcCCCCC-CCcceechhhhhhhhccccccCCCCcchHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHc-
Confidence            5533211122111 000111110      0 12233322 445666777887777788888889999999999999986 


Q ss_pred             CeEEEcC-CCeeEEEEEEcCCCc
Q 048438          155 RFEVVFP-CHFAVVCFRVSPLPV  176 (239)
Q Consensus       155 g~~~~~~-~~~~iv~f~~~~~~~  176 (239)
                      |.+++.. .+..+|.+.+.+.++
T Consensus       341 Gy~lvtgGTDnHlvLvDLr~~G~  363 (477)
T KOG2467|consen  341 GYKLVTGGTDNHLVLVDLRPKGV  363 (477)
T ss_pred             CceEecCCccceEEEEeccccCC
Confidence            9998864 456788888887664

>PRK15029 arginine decarboxylase; Provisional

Probab=98.83  E-value=2.1e-08  Score=93.10  Aligned_cols=145  Identities=12%  Similarity=0.068  Sum_probs=90.7

Q ss_pred             CCccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCccccc--ccC----CCCCcc-eEEEcCcccC
Q 048438            2 GLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRH--FID----GVEGAD-SFSLNAHKWF   74 (239)
Q Consensus         2 g~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~--~~~----~~~~~D-s~~~~~hK~l   74 (239)
                      +.+|.+|++|. .|..|.+-++++|+++||++|+.+|||.|||+...+.+.++.  .+.    ...++| +++-|.||.|
T Consensus       310 ~~~~~avvlt~-PTY~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL  388 (755)
T PRK15029        310 GQKPSYCVVTN-CTYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLL  388 (755)
T ss_pred             ccCceEEEEEC-CCCcceeeCHHHHHHHHHhcCCeEEEECccccccccCccccccccccccccccCCCceEEEEchhhcc
Confidence            45676666554 567999999999999999999999999999987655554432  110    102588 8899999999


Q ss_pred             CCcccceEEEeeCcc-cccccccCCCCccCCCCceecCCCCCChHHHHHHH----HHhCHHHHHHHHHHHHHHHHHHHHH
Q 048438           75 FATLDCCCLWATNPE-YLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVI----RNYGMENLRHFLRSHVNMARLFERL  149 (239)
Q Consensus        75 ~~P~g~g~l~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~g~~g~~~~~~~~~~la~~l~~~  149 (239)
                      .+...++.+.+++.. ++....-.  ..     +..-.++ ..+..+.++|    +.+....-++.+.+..+.+..+++.
T Consensus       389 ~alTQaS~LHv~~~~~~id~~r~~--~~-----l~~~qST-SPSY~LmASLD~ar~~m~~~~G~~l~~~~i~~~~~~r~~  460 (755)
T PRK15029        389 NALSQASYIHVREGRGAINFSRFN--QA-----YMMHATT-SPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQA  460 (755)
T ss_pred             cchhhhhhheeCCCccccCHHHHH--HH-----HHHHcCC-CcHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence            999999999986431 22211000  00     0111111 1123333332    2222211244566677888888888


Q ss_pred             HhCCCC
Q 048438          150 VSGDKR  155 (239)
Q Consensus       150 l~~~~g  155 (239)
                      |+++++
T Consensus       461 l~~~~~  466 (755)
T PRK15029        461 MARLYK  466 (755)
T ss_pred             HHhccc
Confidence            887755

>PRK07505 hypothetical protein; Provisional

Probab=98.82  E-value=1.8e-07  Score=82.03  Aligned_cols=83  Identities=16%  Similarity=0.173  Sum_probs=54.0

Q ss_pred             EEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccc-cCcc-cccccCC--CCCcceEEEcCcccCCCcccce
Q 048438            6 LFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSAC-IFPE-FRHFIDG--VEGADSFSLNAHKWFFATLDCC   81 (239)
Q Consensus         6 ~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~-~~~~-~~~~~~~--~~~~Ds~~~~~hK~l~~P~g~g   81 (239)
                      .+++++...+.+|.+.|+++|.++|++||+++++|.+|+.+.+ ..-. +.....+  ......++.++.|.++++ | |
T Consensus       181 ~~~vl~~p~~~~G~~~~~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~~~s~sK~~~~~-G-g  258 (402)
T PRK07505        181 TVAYVADGVYSMGGIAPVKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFGAS-G-G  258 (402)
T ss_pred             CEEEEEecccccCCcCCHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeEEEEechhhhhcc-C-e
Confidence            4666777788899999999999999999999999999854211 1100 0000111  122456677999998755 3 5


Q ss_pred             EEEeeCccc
Q 048438           82 CLWATNPEY   90 (239)
Q Consensus        82 ~l~~~~~~~   90 (239)
                      ++.+.+++.
T Consensus       259 ~~~~~~~~~  267 (402)
T PRK07505        259 VIMLGDAEQ  267 (402)
T ss_pred             EEEeCCHHH
Confidence            554444433

>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases

Probab=98.81  E-value=4.3e-07  Score=79.68  Aligned_cols=202  Identities=11%  Similarity=0.035  Sum_probs=110.8

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCC-Ccc-eEEEcCcccCCCc-c
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVE-GAD-SFSLNAHKWFFAT-L   78 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~-~~D-s~~~~~hK~l~~P-~   78 (239)
                      +.+|+++..+|.+|.+.+   +++|.++|+++|+++++|.+++-....-+.+.. +..+. ... .++.|+.|.++.| .
T Consensus       170 ~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~-~~~~~~~~~vi~~~S~SK~~~~pGl  248 (403)
T TIGR01265       170 TVAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIP-MASFASIVPVLSLGGISKRWVVPGW  248 (403)
T ss_pred             ccEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccc-hhhhccCCcEEEEeecccccCCCcc
Confidence            456777788899999865   899999999999999999998754322111111 11111 112 3567999986666 3


Q ss_pred             cceEEEeeCcc------cccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhC
Q 048438           79 DCCCLWATNPE------YLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSG  152 (239)
Q Consensus        79 g~g~l~~~~~~------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~  152 (239)
                      -+|++++.+++      ++.....       ...... ....+....+..+++.....-+++..++..+..+++.+.|++
T Consensus       249 RiG~~v~~~~~~~~~~~~~~~~~~-------~~~~~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~  320 (403)
T TIGR01265       249 RLGWIIIHDPHGIFRDTVLQGLKN-------LLQRIL-GPATIVQGALPDILENTPQEFFDGKISVLKSNAELCYEELKD  320 (403)
T ss_pred             eEEEEEEeCchhhhHHHHHHHHHH-------Hhhhhc-CCChHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            47777764432      1111110       000000 001111122222333212234455566667777888899988


Q ss_pred             CCCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHH-hcCcEEEEEEEECCEeEEEEEec
Q 048438          153 DKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESIN-ASGKAYMTNVVLGGIYAIRFATG  231 (239)
Q Consensus       153 ~~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~g~~~lR~~~~  231 (239)
                      .+|+++..|...+-+.++++....              .+..  +  ...+.++|. +.|..+..........++|+++.
T Consensus       321 ~~~~~~~~p~~g~f~~~~~~~~~~--------------~~~~--~--~~~~~~~l~~~~gv~v~pg~~f~~~~~iRis~~  382 (403)
T TIGR01265       321 IPGLVCPKPEGAMYLMVKLELELF--------------PEIK--D--DVDFCEKLVREESVICLPGSAFGLPNWVRITIT  382 (403)
T ss_pred             CCCceecCCCceeEEEEecccccc--------------CCCC--C--HHHHHHHHHHhCCEEEeCccccCCCCeEEEEec
Confidence            778876555556666666653210              0000  0  124555544 45655555444444578999987


Q ss_pred             CC
Q 048438          232 AT  233 (239)
Q Consensus       232 ~~  233 (239)
                      .+
T Consensus       383 ~~  384 (403)
T TIGR01265       383 VP  384 (403)
T ss_pred             CC
Confidence            53

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.

>PRK07324 transaminase; Validated

Probab=98.81  E-value=3.5e-07  Score=79.42  Aligned_cols=192  Identities=11%  Similarity=0.085  Sum_probs=103.1

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-ccc
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-LDC   80 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~   80 (239)
                      +-+|+.+..+|.||.+.+   +++|+++|++||+++++|.++...... ..........+ -...+.+++|.++.| .-+
T Consensus       154 ~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~-~~~~s~~~~~~-~~I~~~s~SK~~~~~G~Ri  231 (373)
T PRK07324        154 TKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDED-GSTPSIADLYE-KGISTNSMSKTYSLPGIRV  231 (373)
T ss_pred             CcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccC-CCCCChhhccC-CEEEEecchhhcCCcccee
Confidence            457778888999999988   899999999999999999998643221 10111111111 235567999987644 225


Q ss_pred             eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHh-CHH-HHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 048438           81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNY-GME-NLRHFLRSHVNMARLFERLVSGDKRFEV  158 (239)
Q Consensus        81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~-g~~~~~~~~~~la~~l~~~l~~~~g~~~  158 (239)
                      |.++. ++..+......       ......+.   ..+.-+.+...+ ..+ -+++..+...+..+.+.+.|++.+++..
T Consensus       232 G~i~~-~~~li~~~~~~-------~~~~~~~~---~~~~q~~a~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~  300 (373)
T PRK07324        232 GWIAA-NEEVIDILRKY-------RDYTMICA---GVFDDMLASLALEHRDAILERNRKIVRTNLAILDEWVAKEPRVSY  300 (373)
T ss_pred             EEEec-CHHHHHHHHHH-------hCcEEecC---ChHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCceE
Confidence            77665 33333322110       00000000   112222222222 112 2333344445566777788887777776


Q ss_pred             EcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHh-cCcEEEEEEEECCEeEEEEEecC
Q 048438          159 VFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINA-SGKAYMTNVVLGGIYAIRFATGA  232 (239)
Q Consensus       159 ~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~~g~~~lR~~~~~  232 (239)
                      +.|...+...+.++.. .               +       ...+.++|.+ .|....+........++|+++..
T Consensus       301 ~~p~gg~~~~i~~~~~-~---------------~-------~~~~~~~ll~~~gv~v~pg~~F~~~~~iRis~~~  352 (373)
T PRK07324        301 VKPKAVSTSFVKLDVD-M---------------P-------SEDFCLKLLKETGVLLVPGNRFDLEGHVRIGYCC  352 (373)
T ss_pred             ECCCceEEEEEEeCCC-C---------------C-------HHHHHHHHHHhcCEEEECccccCCCCeEEEEecC
Confidence            6554333334444321 1               0       1245556543 45555554444334689999765

>PRK07568 aspartate aminotransferase; Provisional

Probab=98.80  E-value=4.3e-07  Score=79.38  Aligned_cols=159  Identities=10%  Similarity=0.056  Sum_probs=88.0

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccc--cCCCCCcceEEEcCcccCCCc-c
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--IDGVEGADSFSLNAHKWFFAT-L   78 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~~~~~~~Ds~~~~~hK~l~~P-~   78 (239)
                      +-+|+++..+|.+|.+.+   +++|+++|+++|+++++|.+++.....-......  +.+...--.++.|++|.++.| .
T Consensus       163 ~~~v~i~~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~  242 (397)
T PRK07568        163 TKAILISNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKRYSACGA  242 (397)
T ss_pred             ceEEEEECCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCCEEEEecchhhccCCCc
Confidence            346677778899999875   7889999999999999999987543211111111  111111125677999997643 3


Q ss_pred             cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 048438           79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEV  158 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~  158 (239)
                      -+|+++..+++.+.......     ...+.   ...+....+..+++. +.+-+++..+...+..+.+.+.|++.+++.+
T Consensus       243 R~G~~~~~~~~~~~~~~~~~-----~~~~~---~s~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~  313 (397)
T PRK07568        243 RIGCLISKNKELIAAAMKLC-----QARLS---PPTLEQIGAAALLDT-PESYFDEVREEYKKRRDILYEELNKIPGVVC  313 (397)
T ss_pred             ceEEEecCCHHHHHHHHHHh-----hccCC---CCcHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHHHHHHHhcCCCcee
Confidence            46766654433332221000     00010   001111122222321 3344556666677788889999988777765


Q ss_pred             EcCCCee-EEEEEEcC
Q 048438          159 VFPCHFA-VVCFRVSP  173 (239)
Q Consensus       159 ~~~~~~~-iv~f~~~~  173 (239)
                      . +|..+ .+.++++.
T Consensus       314 ~-~p~g~~~~~~~l~~  328 (397)
T PRK07568        314 E-KPKGAFYIIAKLPV  328 (397)
T ss_pred             c-CCCcceEEEEecCC
Confidence            4 34444 34556643

>PRK00950 histidinol-phosphate aminotransferase; Validated

Probab=98.78  E-value=2.1e-07  Score=80.20  Aligned_cols=183  Identities=14%  Similarity=0.143  Sum_probs=100.9

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcc-cceEE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATL-DCCCL   83 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~-g~g~l   83 (239)
                      +-+|+++..+|.+|.+.|+++|.++|+++|+++++|++|+... . ..........+ --.+..+++|.++.|. -+|.+
T Consensus       159 ~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~li~De~y~~~~-~-~~~~~~~~~~~-~vi~~~S~SK~~g~~GlRiG~~  235 (361)
T PRK00950        159 TKVIFLCTPNNPTGNLIPEEDIRKILESTDALVFVDEAYVEFA-E-YDYTPLALEYD-NLIIGRTFSKVFGLAGLRIGYG  235 (361)
T ss_pred             CCEEEEeCCCCCCCCCcCHHHHHHHHHHCCcEEEEECchhhhC-c-cchHHHHHhcC-CEEEEEeehHhhcCchhhcchh
Confidence            3456667889999999999999999999999999999996432 1 11111121111 1245678999876442 25555


Q ss_pred             EeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcCC
Q 048438           84 WATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGM-ENLRHFLRSHVNMARLFERLVSGDKRFEVVFPC  162 (239)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~~  162 (239)
                      +. .+.+........      ..+.      ...+....++..+.. +-+++..++..++.+++.+.|.    +++ .++
T Consensus       236 ~~-~~~~~~~~~~~~------~~~~------~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~l~----~~~-~~~  297 (361)
T PRK00950        236 FV-PEWLIDYYMRAK------TPFS------LTRLSQAAAIAALSDKEYIEKSIEHGIKSREYLYNELP----FKV-YPS  297 (361)
T ss_pred             cC-CHHHHHHHHHhc------CCCC------CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcC----eeE-CCC
Confidence            54 333332221100      0011      112333333333322 2344445555555555655553    444 355


Q ss_pred             CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEEC--CEeEEEEEecC
Q 048438          163 HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLG--GIYAIRFATGA  232 (239)
Q Consensus       163 ~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~--g~~~lR~~~~~  232 (239)
                      ..+.+.+.+++..                        ...+.+.|.++|..........  +..++|++++.
T Consensus       298 ~~~~i~~~~~~~~------------------------~~~~~~~l~~~gv~v~~~~~f~~~~~~~lRis~~~  345 (361)
T PRK00950        298 EANFVLVDVTPMT------------------------AKEFCEELLKRGVIVRDCTSFRGLGDYYIRVSIGT  345 (361)
T ss_pred             cceEEEEECCCCC------------------------HHHHHHHHHHCCEEEeeCCccCCCCCCeEEEECCC
Confidence            6677777773311                        1256666766665444333332  35689999873

>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=98.78  E-value=1.5e-07  Score=81.25  Aligned_cols=152  Identities=17%  Similarity=0.261  Sum_probs=108.6

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ce
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CC   81 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g   81 (239)
                      .+-+|.+-.-+|.+..+.||++|+++||++|+.++||.+++.+.+.-+     ++  -+||+++-|+.|.+++...  .|
T Consensus       149 ~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP~~q~P-----L~--~GaDIVvhSaTKyl~GHsDvl~G  221 (396)
T COG0626         149 NTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATPVLQRP-----LE--LGADIVVHSATKYLGGHSDVLGG  221 (396)
T ss_pred             CceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCcccccccCh-----hh--cCCCEEEEeccccccCCcceeee
Confidence            356777888899999999999999999999999999999988766333     21  1499999999999998755  34


Q ss_pred             EEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE-EEc
Q 048438           82 CLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE-VVF  160 (239)
Q Consensus        82 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~-~~~  160 (239)
                      ++..+++ .+......        ...-..|.-..+...|..+|  |.+.+.-|++++.+.|..+.+.|++.|.++ |+.
T Consensus       222 ~v~~~~~-~~~~~~~~--------~~~~~~G~~l~p~dA~l~lR--GlkTL~~Rm~~~~~nA~~IA~~L~~~p~V~~V~y  290 (396)
T COG0626         222 VVLTPNE-ELYELLFF--------AQRANTGAVLSPFDAWLLLR--GLRTLALRMERHNENALKIAEFLADHPKVKKVYY  290 (396)
T ss_pred             EEecChH-HHHHHHHH--------HHHhhcCCCCCHHHHHHHHh--ccchHHHHHHHHHHHHHHHHHHHhcCCCeEEEEC
Confidence            3333332 22211100        00001222334456677776  677888999999999999999999998887 444


Q ss_pred             CC----------------CeeEEEEEEcC
Q 048438          161 PC----------------HFAVVCFRVSP  173 (239)
Q Consensus       161 ~~----------------~~~iv~f~~~~  173 (239)
                      |.                ..++++|.+.+
T Consensus       291 Pgl~shp~he~~~rq~~g~gg~~Sf~l~~  319 (396)
T COG0626         291 PGLPSHPGHELAKRQMTGYGGLFSFELKN  319 (396)
T ss_pred             CCCCCCCcHHHHHHhcCCCceEEEEEeCC
Confidence            42                35799999986

>PRK04635 histidinol-phosphate aminotransferase; Provisional

Probab=98.78  E-value=6.2e-08  Score=83.50  Aligned_cols=189  Identities=11%  Similarity=0.012  Sum_probs=104.7

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHh-CCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-ccceE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQF-GIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-LDCCC   82 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~-gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~g~   82 (239)
                      +-+|+++.-+|.||.+.|.+++.++++.. ++++++|.+|.-.... ..........+.+ .+..+++|+++.| .-+|+
T Consensus       148 ~~li~i~nP~NPTG~~~~~~~l~~l~~~~~~~~vivDeay~~~~~~-~s~~~~~~~~~~~-iv~~S~SK~~~l~GlRlG~  225 (354)
T PRK04635        148 AKLVFICNPNNPTGTVIDRADIEQLIEMTPDAIVVVDEAYIEFCPE-YSVADLLASYPNL-VVLRTLSKAFALAGARCGF  225 (354)
T ss_pred             CCEEEEeCCCCCCCccCCHHHHHHHHHhCCCcEEEEeCchHhhccC-cchHHHHhhCCCE-EEEechHHHhhhhHHHHhh
Confidence            44677788899999999999999999874 7999999998643211 1100111111112 4577999997522 33677


Q ss_pred             EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcCC
Q 048438           83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPC  162 (239)
Q Consensus        83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~~  162 (239)
                      ++. +++.+.......      ..+...  . ........++...+.+.+++..++..+..+++.+.|++.+++++. ++
T Consensus       226 ~i~-~~~~~~~l~~~~------~~~~~~--~-~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~-~~  294 (354)
T PRK04635        226 TLA-NEELIEILMRVI------APYPVP--L-PVSEIATQALSEAGLARMKFQVLDLNAQGARLQAALSMYGGAKVL-EG  294 (354)
T ss_pred             hhC-CHHHHHHHHhhc------CCCCCC--H-HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEC-CC
Confidence            765 344443221100      001100  0 000111122222233445556666677778899999988667765 55


Q ss_pred             CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecC
Q 048438          163 HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGA  232 (239)
Q Consensus       163 ~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~  232 (239)
                      ..+.+.+++++.                      .    .+.+.|.++|..+..........++|+++..
T Consensus       295 ~g~f~~~~~~~~----------------------~----~~~~~l~~~gv~v~~~~~~~~~~~lRis~~~  338 (354)
T PRK04635        295 NGNYVLAKFDDV----------------------D----AVFKALWDAGIVARAYKDPRLANCIRFSFSN  338 (354)
T ss_pred             CCcEEEEECCCH----------------------H----HHHHHHHHCCEEEEECCCCCCCCeEEEEeCC
Confidence            556555554320                      1    4555666666554332211234689999753

>PRK06207 aspartate aminotransferase; Provisional

Probab=98.77  E-value=6e-07  Score=78.83  Aligned_cols=195  Identities=11%  Similarity=0.096  Sum_probs=108.7

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCC---CcceEEEcCcccCCCcc
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVE---GADSFSLNAHKWFFATL   78 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~---~~Ds~~~~~hK~l~~P~   78 (239)
                      +-+|+.+.-+|.||.+.+   +++|+++|++||+++++|.+++-.......... ...+.   .-=+++.++.|.++.| 
T Consensus       179 ~k~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~-~~~~~~~~~~vi~i~SfSK~~~lp-  256 (405)
T PRK06207        179 VRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTH-LRALPIDPENVITIMGPSKTESLS-  256 (405)
T ss_pred             CeEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCc-hhcCCCCcCcEEEEecchhhccCc-
Confidence            345677777899999988   777888999999999999998754321110000 11111   0115778999998755 


Q ss_pred             c--ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCe
Q 048438           79 D--CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRF  156 (239)
Q Consensus        79 g--~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~  156 (239)
                      |  +|.++. ++.++.......    ..  +... ...+....+..+++. +..-+++++++..+..+++.+.|++++++
T Consensus       257 GlRiG~ii~-~~~l~~~~~~~~----~~--~~~~-~~~~~q~a~~~~l~~-~~~~~~~~~~~~~~~r~~l~~~L~~~~~~  327 (405)
T PRK06207        257 GYRLGVAFG-SPAIIDRMEKLQ----AI--VSLR-AAGYSQAVLRTWFSE-PDGWMKDRIARHQAIRDDLLRVLRGVEGV  327 (405)
T ss_pred             ccceEEEEc-CHHHHHHHHHHH----hH--hccC-CCHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            5  776654 333333221100    00  0000 000111122222221 22235666777777788888999887788


Q ss_pred             EEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHH-hcCcEEEEEEEE--CCEeEEEEEecC
Q 048438          157 EVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESIN-ASGKAYMTNVVL--GGIYAIRFATGA  232 (239)
Q Consensus       157 ~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~--~g~~~lR~~~~~  232 (239)
                      ++..+...+-+.+++++...               +       ...+.+.|. +.|..+......  .+..++|+++..
T Consensus       328 ~~~~p~gg~fl~~~l~~~~~---------------~-------~~~~~~~l~~~~gV~v~pG~~F~~~~~~~~Ris~~~  384 (405)
T PRK06207        328 FVRAPQAGSYLFPRLPRLAV---------------S-------LHDFVKILRLQAGVIVTPGTEFSPHTADSIRLNFSQ  384 (405)
T ss_pred             eecCCCeeEEEEEeCcccCC---------------C-------HHHHHHHHHHhcCEEEeCchHhCCCCCCeEEEEecC
Confidence            76544445566666653211               0       124566665 346655554433  235789999875

>PRK08363 alanine aminotransferase; Validated

Probab=98.77  E-value=2.2e-07  Score=81.38  Aligned_cols=199  Identities=11%  Similarity=0.084  Sum_probs=107.4

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCc-c-eEEEcCcccCC-Ccc
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGA-D-SFSLNAHKWFF-ATL   78 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~-D-s~~~~~hK~l~-~P~   78 (239)
                      +-+|+.+..+|.||.+.+   +++|+++|+++|+++++|.+|+.....-+ ... ...+... . .+..+++|+++ ...
T Consensus       167 ~~~v~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~-~~~-~~~~~~~~~vi~~~SfSK~~~~~Gl  244 (398)
T PRK08363        167 TKAIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGK-HVS-PGSLTKDVPVIVMNGLSKVYFATGW  244 (398)
T ss_pred             eEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCc-ccC-HHHcCcCCcEEEEecchhccCCccc
Confidence            346667788899999887   88999999999999999999875322110 000 1111112 2 34679999954 445


Q ss_pred             cceEEEee-CcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438           79 DCCCLWAT-NPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE  157 (239)
Q Consensus        79 g~g~l~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~  157 (239)
                      .+|++++. .+..+....... ...  .......+ .+.......++.. ..+-+++..++..+..+++.+.|.++++++
T Consensus       245 RiG~~~~~~~~~~~~~l~~~~-~~~--~~~~~~~s-~~~q~~~~~~l~~-~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~  319 (398)
T PRK08363        245 RLGYIYFVDPEGKLAEVREAI-DKL--ARIRLCPN-TPAQFAAIAGLTG-PMDYLEEYMKKLKERRDYIYKRLNEIPGIS  319 (398)
T ss_pred             eEEEEEEeCcHHHHHHHHHHH-HHH--hcccccCC-hHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHhcCCCCE
Confidence            67888762 332222111000 000  00000001 1111112222321 234555666667778888889998887877


Q ss_pred             EEcCCCeeEEEE-EEcCCCcchhhhhhhhcccccccHHHHHHHHHHH-HHHHHhcCcEEEEEEEEC--CEeEEEEEecC
Q 048438          158 VVFPCHFAVVCF-RVSPLPVLMDKLKTKYENCLLSEEEQINEFNREL-LESINASGKAYMTNVVLG--GIYAIRFATGA  232 (239)
Q Consensus       158 ~~~~~~~~iv~f-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~l~~~g~~~~~~~~~~--g~~~lR~~~~~  232 (239)
                      +. +++.+.+.+ ++++...              .+       ...+ .+.|.++|....+.....  +..++|+++..
T Consensus       320 ~~-~p~g~~~~~~~l~~~~~--------------~~-------~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~~  376 (398)
T PRK08363        320 TT-KPQGAFYIFPRIEEGPW--------------KD-------DKEFVLDVLHEAHVLFVHGSGFGEYGAGHFRLVFLP  376 (398)
T ss_pred             ec-CCCeEEEEEEEeccCCC--------------CC-------HHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecC
Confidence            54 566676665 5543100              00       0123 233455666555444332  34689999864

>PRK02731 histidinol-phosphate aminotransferase; Validated

Probab=98.75  E-value=3.5e-07  Score=79.09  Aligned_cols=188  Identities=12%  Similarity=0.031  Sum_probs=110.9

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHh--CCEEEEecccccccccCcccc--cccCCCCCcceEEEcCcccCCCc-cc
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQF--GIWVHVDAAYAGSACIFPEFR--HFIDGVEGADSFSLNAHKWFFAT-LD   79 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~--gi~lhvD~A~~~~~~~~~~~~--~~~~~~~~~Ds~~~~~hK~l~~P-~g   79 (239)
                      +-+|+++..+|.+|.+.|.++|.++++.+  |+++++|.+|......-....  .... ...-.+++.++.|.++.| ..
T Consensus       155 ~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~g~~G~R  233 (367)
T PRK02731        155 TRLVFIANPNNPTGTYLPAEEVERFLAGVPPDVLVVLDEAYAEYVRRKDYEDGLELVA-KFPNVVVTRTFSKAYGLAGLR  233 (367)
T ss_pred             CcEEEEeCCCCCCCcCCCHHHHHHHHHhCCCCcEEEEECcHHHhccCcCcccHHHHHh-hcCCEEEEeeehHhhcCcccc
Confidence            45677788899999999999999999875  999999999865432111000  0011 111235566889986533 34


Q ss_pred             ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 048438           80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGM-ENLRHFLRSHVNMARLFERLVSGDKRFEV  158 (239)
Q Consensus        80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-~g~~~~~~~~~~la~~l~~~l~~~~g~~~  158 (239)
                      +|+++.. ++.+.......      ..+.      ...+..+.+...+.. +.+++..++..++.+++.+.|++. |+.+
T Consensus       234 iG~l~~~-~~~~~~l~~~~------~~~~------~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~  299 (367)
T PRK02731        234 VGYGIAP-PEIIDALNRVR------QPFN------VNSLALAAAVAALDDDAFVEKSRALNAEGMAWLTEFLAEL-GLEY  299 (367)
T ss_pred             eeeeeCC-HHHHHHHHHcc------CCCC------CCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCcc
Confidence            6887763 33332221100      0011      122334444444432 334566666778888899999886 7776


Q ss_pred             EcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEec
Q 048438          159 VFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATG  231 (239)
Q Consensus       159 ~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~  231 (239)
                      . ++..+.+.+++++..                     +  ...+.+.|.++|.............++|++++
T Consensus       300 ~-~~~g~~~~i~~~~~~---------------------~--~~~~~~~L~~~gI~v~~~~~~~~~~~iRis~~  348 (367)
T PRK02731        300 I-PSVGNFILVDFDDGK---------------------D--AAEAYQALLKRGVIVRPVAGYGLPNALRITIG  348 (367)
T ss_pred             C-CCCceEEEEECCCCC---------------------C--HHHHHHHHHHCCEEEEeCCCCCCCCeEEEecC
Confidence            5 556788888874321                     0  12566677666655443322222468999976

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=98.75  E-value=4.8e-07  Score=79.25  Aligned_cols=194  Identities=12%  Similarity=0.060  Sum_probs=105.4

Q ss_pred             cEEEEEecCCCCcccc----cChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438            5 PLFLCATIGTTAITAV----DPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC   80 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i----~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~   80 (239)
                      ..+|++.-..++.|.+    ..+++|.++|++||+++++|.+|.+.--...-+.....++. .|+++  ..|.+++-...
T Consensus       180 ~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~~~a~~~~gv~-pDi~t--~~K~lggG~pi  256 (397)
T TIGR03246       180 TCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVT-PDILT--SAKALGGGFPI  256 (397)
T ss_pred             eEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccccchhhhhcCCC-CCEEE--eehhhhCCcce
Confidence            4466666555666754    44999999999999999999998543111110110122443 88875  57888543446


Q ss_pred             eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC-CeEEE
Q 048438           81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK-RFEVV  159 (239)
Q Consensus        81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~-g~~~~  159 (239)
                      |.+..++ ++.......      ....++ .+.+.......++++.+..   ++..++..++.+++.+.|+++. .+.++
T Consensus       257 gav~~~~-~i~~~~~~~------~~~~t~-~~~p~~~aaa~a~l~~~~~---~~l~~~~~~~~~~l~~~L~~l~~~~~~~  325 (397)
T TIGR03246       257 GAMLTTT-EIAAHLKVG------THGTTY-GGNPLACAVAGKVLDLVNT---PELLAGVKQRHDLFVDGLEKINARYNVF  325 (397)
T ss_pred             eEEEEcH-HHHHhccCC------CcCCCC-CCCHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence            6666543 332221100      000111 1222222333344554432   3456667788899999887752 12222


Q ss_pred             cC--CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCCc
Q 048438          160 FP--CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTEE  237 (239)
Q Consensus       160 ~~--~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~  237 (239)
                      ..  ....++.+.+.+..                     +.....+.+.|.++|.+...    .|..++|+++....|++
T Consensus       326 ~~vrg~G~~~~i~~~~~~---------------------~~~~~~~~~~l~~~Gv~~~~----~g~~~lR~~p~~~~t~~  380 (397)
T TIGR03246       326 SEIRGKGLLIGAVLTEAY---------------------QGKAKQFVNAAAEEGVIALI----AGPNVVRFAPSLVISDD  380 (397)
T ss_pred             EeeecCceEEEEEEcCch---------------------hhHHHHHHHHHHHCCeEEee----cCCCEEEEeCCCCCCHH
Confidence            21  12234444443210                     12344677788888877543    24578999977776654

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.75  E-value=5.9e-08  Score=83.20  Aligned_cols=197  Identities=16%  Similarity=0.037  Sum_probs=119.0

Q ss_pred             EEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCccccc--ccCC--CCCcceEEEcCcccCCCcccceE
Q 048438            7 FLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRH--FIDG--VEGADSFSLNAHKWFFATLDCCC   82 (239)
Q Consensus         7 ~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~--~~~~--~~~~Ds~~~~~hK~l~~P~g~g~   82 (239)
                      +|+.---.++-|.+.+++++.+++|+|.+++++|.||++|++.-- .+.  ...+  -..+|.+...+.|.+++   +|.
T Consensus       279 ~iivegiysmEg~iv~Lp~vvalkkkykayl~lDEAHSiGA~g~t-Grgvce~~g~d~~dvDImMGtftKSfga---~GG  354 (519)
T KOG1357|consen  279 LICVEGIYSMEGTIVDLPEVVALKKKYKAYLYLDEAHSIGAMGAT-GRGVCEYFGVDPEDVDIMMGTFTKSFGA---AGG  354 (519)
T ss_pred             eeeeccceeccCeecccHHHHHhhccccEEEEeeccccccccCCC-CcceeeccCCCchhheeecceehhhccc---ccc
Confidence            333333457899999999999999999999999999999987321 111  0111  12499999999999876   344


Q ss_pred             EEeeCcccccccccCCCCccCCCCceecC-CCCCC-hHHHHHHHHHh----CHHHHHHHHHHHHHHHHHHHHHHhCCCCe
Q 048438           83 LWATNPEYLKNKATESKPVVDYKDWQITL-SRSFR-SLKLWFVIRNY----GMENLRHFLRSHVNMARLFERLVSGDKRF  156 (239)
Q Consensus        83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~l~~~----g~~g~~~~~~~~~~la~~l~~~l~~~~g~  156 (239)
                      ....+............       ..... +.+.. +-....+++.+    |.+.-++++++..+++++++..|++. ||
T Consensus       355 yiagsk~lid~lrt~s~-------~~~yat~~sppvaqq~~ssl~~i~G~dgt~~g~~k~~~l~~ns~yfr~~l~~~-gf  426 (519)
T KOG1357|consen  355 YIAGSKELIDYLRTPSP-------SALYATSLSPPVAQQILTSVKHIMGEDGTNRGRQKIERLAENSRYFRWELQKM-GF  426 (519)
T ss_pred             eecCcHHHHhhhccCCC-------ceeecccCChHHHHHHHHHHHhhcCCCcccHHHHHHHHHHhhhHHHHHhhhcC-cE
Confidence            44433322222211100       01111 11111 11122233322    45566788888999999999999885 99


Q ss_pred             EEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEEC---CEeEEEEEecCC
Q 048438          157 EVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLG---GIYAIRFATGAT  233 (239)
Q Consensus       157 ~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~---g~~~lR~~~~~~  233 (239)
                      .+++..+++++...+-++.                       .+..+.++|.++....+......   =....|+|..+.
T Consensus       427 ivyG~~dSpVvplll~~~~-----------------------k~~~f~r~~l~~nigvVvvgfPatpl~e~r~R~c~Sa~  483 (519)
T KOG1357|consen  427 IVYGNNDSPVVPLLLYGPA-----------------------KIVAFSREMLERNIGVVVVGFPATPLLESRARFCLSAS  483 (519)
T ss_pred             EEecCCCCCcceeeecCcc-----------------------cccHHHHHHHhcCceEEEEeCCCchHHHhHHHhhhccc
Confidence            9999888877777765532                       11244555655544433221111   124669998888


Q ss_pred             CCCcC
Q 048438          234 LTEER  238 (239)
Q Consensus       234 ~t~~~  238 (239)
                      +|.|+
T Consensus       484 ht~e~  488 (519)
T KOG1357|consen  484 HTKED  488 (519)
T ss_pred             ccHHH
Confidence            88764

>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

Probab=98.75  E-value=4.8e-07  Score=79.24  Aligned_cols=202  Identities=13%  Similarity=0.045  Sum_probs=122.7

Q ss_pred             CccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcc
Q 048438            3 LIPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATL   78 (239)
Q Consensus         3 ~~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~   78 (239)
                      ..|.++++--...+-|.+.|    ++++.++|++||+.+++|..|.+..-...-|..-..++. .|.++++  |.+++-.
T Consensus       221 ~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG~~fa~E~~gv~-PDivt~a--K~ig~G~  297 (447)
T COG0160         221 EEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGKMFAFEHFGVE-PDIVTLA--KSLGGGL  297 (447)
T ss_pred             CceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCccccchhhhhcCCC-CCEEEec--ccccCCC
Confidence            45788888888888899877    789999999999999999999876543332222244554 9998865  8877755


Q ss_pred             cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC-CCeE
Q 048438           79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD-KRFE  157 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~-~g~~  157 (239)
                      ..|.+..+ ++... ....      ...++ ..|.+..+.+..+.|+.+-.+   +..++..++.+++++.|.++ ..+.
T Consensus       298 Pl~avv~r-~ei~~-~~~g------~~~~T-f~GNpva~Aaa~AvL~vie~e---~L~~~a~~~G~~l~~~L~~l~~~~~  365 (447)
T COG0160         298 PLSAVVGR-AEIMD-WPPG------GHGGT-FGGNPVACAAALAVLDVIEEE---NLLERAAELGEYLRDRLEELQEKHP  365 (447)
T ss_pred             ceeEEecc-HHhcc-cCCc------ccCCC-CCcCHHHHHHHHHHHHHHHHc---cHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            56666664 34433 2111      01112 233344444444556655444   45556668888888888754 2344


Q ss_pred             EEcCCCe--eEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCC
Q 048438          158 VVFPCHF--AVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLT  235 (239)
Q Consensus       158 ~~~~~~~--~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t  235 (239)
                      ++++.+-  -++...+..+..               +.+-..++..++.+++.++|.++.+..  ....+||+.+--..|
T Consensus       366 ~IgdVRG~Glm~giE~v~d~~---------------t~~p~~~~~~~i~~~~~~~Glil~~~G--~~~nviRi~PPL~is  428 (447)
T COG0160         366 LIGDVRGLGLMIGVELVKDRD---------------TKEPDAELAAKIVARAFERGLLLLTCG--PHGNVLRILPPLTIS  428 (447)
T ss_pred             ceecccccceEEEEEEecCCC---------------CCCCCHHHHHHHHHHHHHcCCEEeccC--CCCcEEEEeCCcccC
Confidence            5555431  244444432110               000013566688899999998766531  126789988655444


Q ss_pred             C
Q 048438          236 E  236 (239)
Q Consensus       236 ~  236 (239)
                      +
T Consensus       429 ~  429 (447)
T COG0160         429 D  429 (447)
T ss_pred             H
Confidence            4

>cd00617 Tnase_like Tryptophanase family (Tnase)

Probab=98.74  E-value=1.1e-07  Score=83.74  Aligned_cols=160  Identities=20%  Similarity=0.200  Sum_probs=90.5

Q ss_pred             cEEEEEecCCCCc-cccc---ChhHHHHHHHHhCCEEEEecccccccccC-----ccccc-ccC-----CCCCcceEEEc
Q 048438            5 PLFLCATIGTTAI-TAVD---PLKPLCDVAKQFGIWVHVDAAYAGSACIF-----PEFRH-FID-----GVEGADSFSLN   69 (239)
Q Consensus         5 p~~vv~t~gtt~~-G~i~---pl~~i~~i~~~~gi~lhvD~A~~~~~~~~-----~~~~~-~~~-----~~~~~Ds~~~~   69 (239)
                      +.+|+++..+|.+ |..-   ++++|.++|++||+++|.|+|+....+.+     +.+.. ...     -...+|+++++
T Consensus       153 ~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~si~ei~~e~~s~sd~~~mS  232 (431)
T cd00617         153 IPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSIAEIAREMFSYADGCTMS  232 (431)
T ss_pred             ccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccccCCCHHHHHHHhhccCCEEEEE
Confidence            3455666666655 7765   46688999999999999999987642222     11111 000     01249999999


Q ss_pred             CcccCCCcccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChH-HHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Q 048438           70 AHKWFFATLDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSL-KLWFVIRNYGMENLRHFLRSHVNMARLFER  148 (239)
Q Consensus        70 ~hK~l~~P~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~g~~g~~~~~~~~~~la~~l~~  148 (239)
                      +||-+++|.| |++..++++.........   +....+...++...+-. ++..+|+... +  .+.+++..+.++++.+
T Consensus       233 ~~K~~~~~~G-G~i~~~d~~l~~~~~~~~---~~~~~~~~~gG~~~r~~~A~A~gL~e~~-~--~~~l~~~~~~r~~l~~  305 (431)
T cd00617         233 AKKDGLVNIG-GFLALRDDELYEEARQRV---VLYEGFVTYGGMAGRDMEALAQGLREAV-E--EDYLRHRVEQVRYLGD  305 (431)
T ss_pred             eecCCCCccc-eEEEeCcHHHHHHHHHhc---cccCCccccccccHHHHHHHHHHHHhcc-c--HHHHHHHHHHHHHHHH
Confidence            9999888863 455555443443322100   00001111122221111 1222333211 1  2445555567789999


Q ss_pred             HHhCCCCeEEEcCCCeeEEEEEEc
Q 048438          149 LVSGDKRFEVVFPCHFAVVCFRVS  172 (239)
Q Consensus       149 ~l~~~~g~~~~~~~~~~iv~f~~~  172 (239)
                      .|++. |+.+..|...+.|.+..+
T Consensus       306 ~L~~~-G~~v~~P~Ggh~v~~d~~  328 (431)
T cd00617         306 RLDEA-GVPIVEPAGGHAVFIDAR  328 (431)
T ss_pred             HHHHC-CCCccCCCcceEEEEEhH
Confidence            99986 998887766767776665

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.

>PRK07049 methionine gamma-lyase; Validated

Probab=98.73  E-value=4e-07  Score=80.41  Aligned_cols=149  Identities=12%  Similarity=0.163  Sum_probs=100.0

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHH------hCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcc
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQ------FGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATL   78 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~------~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~   78 (239)
                      +-+|.+..-+|.+|.+.|+++|.+++++      ++++++||.++......-+     +..  ++|.++.|++|.+++..
T Consensus       175 tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~~~~~~p-----l~~--g~divv~S~SK~~gG~~  247 (427)
T PRK07049        175 VSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLLGPVFQKP-----LEH--GADLSVYSLTKYVGGHS  247 (427)
T ss_pred             ceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCccccccCCc-----ccc--CCCEEEEcCceeecCCC
Confidence            5577777889999999999999999988      8999999999765432111     111  48999999999998643


Q ss_pred             c--ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCe
Q 048438           79 D--CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRF  156 (239)
Q Consensus        79 g--~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~  156 (239)
                      |  +|++. .++++......          .....+........|.+++.+  +.+..++++..+.++.+.+.|++.|++
T Consensus       248 glr~G~vv-~~~~l~~~l~~----------~~~~~g~~ls~~~a~l~~r~L--~tl~~R~~~~~~~a~~la~~L~~~p~V  314 (427)
T PRK07049        248 DLVAGAVL-GRKALIRQVRA----------LRSAIGTQLDPHSCWMLGRSL--ETLVLRMERANRNARAVAEFLRDHPKV  314 (427)
T ss_pred             CcEEEEEE-CCHHHHHHHHH----------HHHhcCCCCCHHHHHHHHcCC--ChHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            3  34443 33333222210          011112223345566665544  467788888899999999999999887


Q ss_pred             EEE-cCC------------------CeeEEEEEEcC
Q 048438          157 EVV-FPC------------------HFAVVCFRVSP  173 (239)
Q Consensus       157 ~~~-~~~------------------~~~iv~f~~~~  173 (239)
                      +-+ .|.                  ..++++|.+++
T Consensus       315 ~~v~yp~~l~~~~~~~~~~~~~~~g~g~~~s~~~~~  350 (427)
T PRK07049        315 EKLHYLPFLDPDSAYGAVYKRQCTGAGSTFSFDIKG  350 (427)
T ss_pred             cEEECCCCCCCCCccHHHHHhhCCCCccEEEEEEcC
Confidence            533 231                  13599999974

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase

Probab=98.73  E-value=8.9e-07  Score=77.06  Aligned_cols=194  Identities=15%  Similarity=0.065  Sum_probs=106.0

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccc--cCCCCCcceEEEcCcccCCCccc
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--IDGVEGADSFSLNAHKWFFATLD   79 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~~~~~~~Ds~~~~~hK~l~~P~g   79 (239)
                      +-+|+++..+|.||.+.+   +++|+++|++||+++++|.+|+-....-......  +.+.....++..++.|.++ ..|
T Consensus       165 ~~~v~i~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g-~~G  243 (383)
T TIGR03540       165 AKLMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYN-MTG  243 (383)
T ss_pred             ceEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEecccccC-Ccc
Confidence            456667777899999988   6888999999999999999987432211000000  1111123466788999875 445


Q ss_pred             --ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438           80 --CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE  157 (239)
Q Consensus        80 --~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~  157 (239)
                        +|+++. +++.+......       ......+...........+++. +.+-+++..+...+..+.+.+.|++. |++
T Consensus       244 lRiG~~i~-~~~l~~~~~~~-------~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~  313 (383)
T TIGR03540       244 WRIGMAVG-NADLIAGLGKV-------KTNVDSGVFQAIQYAAIAALNG-PQDVVKEIRKIYQRRRDLLLEALKKI-GID  313 (383)
T ss_pred             ceeeEEeC-CHHHHHHHHHH-------HHhcccCCChHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHhC-CCE
Confidence              677654 34433322110       0000000000111122222322 23444555566678888899999886 888


Q ss_pred             EEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHh-cCcEEEEEEEE--CCEeEEEEEecC
Q 048438          158 VVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINA-SGKAYMTNVVL--GGIYAIRFATGA  232 (239)
Q Consensus       158 ~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~--~g~~~lR~~~~~  232 (239)
                      +..+.....+.+.+++. ..                      ...+.+.|.+ .|....+....  .+..++|+++..
T Consensus       314 ~~~~~~~~~~~~~l~~~-~~----------------------~~~~~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~~  368 (383)
T TIGR03540       314 VEKPKATFYVWVPVPEG-YT----------------------SAEFAARLLEETGVVVTPGVGFGEYGEGYIRISLTV  368 (383)
T ss_pred             ecCCCcceEEEEECCCC-CC----------------------HHHHHHHHHHHCCEEEecchhhCccCCCeEEEEecC
Confidence            76443333455666532 10                      1255666544 45554443333  234689999864

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.

>PRK14807 histidinol-phosphate aminotransferase; Provisional

Probab=98.72  E-value=7.4e-07  Score=76.73  Aligned_cols=188  Identities=14%  Similarity=0.044  Sum_probs=109.3

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-ccceE
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-LDCCC   82 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~g~   82 (239)
                      .+-+|+++..+|.||.+.+.+++.++|++++.++++|.+|+.. . -..........+ --++..|++|.++.| .-+|.
T Consensus       148 ~~k~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~ivDe~y~~~-~-~~~~~~~~~~~~-~vi~~~S~SK~~~~~GlRiG~  224 (351)
T PRK14807        148 QPKLVFLCNPNNPTGSVIEREDIIKIIEKSRGIVVVDEAYFEF-Y-GNTIVDVINEFE-NLIVLRTLSKAFGLAGLRVGY  224 (351)
T ss_pred             CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEeCcchhh-c-ccchHHHhhhCC-CEEEEecchHhcccchhceee
Confidence            3456667788999999999999999999989999999999642 1 111111111111 236678999998634 33566


Q ss_pred             EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcCC
Q 048438           83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPC  162 (239)
Q Consensus        83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~~  162 (239)
                      ++. .++.+.......      ..+.      ...+....+...+....++++.++..+..+++.+.|++.+|+++. ++
T Consensus       225 ~v~-~~~~~~~~~~~~------~~~~------~~~~~q~~~~~~l~~~~~~~~~~~~~~~r~~l~~~l~~~~g~~~~-~~  290 (351)
T PRK14807        225 AVA-NENILKYLNLVK------SPYN------INSLSQVIALKVLRTGVLKERVNYILNERERLIKELSKIPGIKVY-PS  290 (351)
T ss_pred             eec-CHHHHHHHHHcc------CCCC------cCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEC-cC
Confidence            554 333333221100      0011      112222333333333345666666777778888889887888764 55


Q ss_pred             CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEE-ECCEeEEEEEecCCC
Q 048438          163 HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVV-LGGIYAIRFATGATL  234 (239)
Q Consensus       163 ~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~-~~g~~~lR~~~~~~~  234 (239)
                      ..+.+.++++.                          ...+.+.|.++|..+..... .....++|+++.++.
T Consensus       291 ~~~~~~i~~~~--------------------------~~~~~~~l~~~gV~v~~~~~~~~~~~~iRis~~~~~  337 (351)
T PRK14807        291 KTNFILVKFKD--------------------------ADYVYQGLLERGILVRDFSKVEGLEGALRITVSSCE  337 (351)
T ss_pred             CccEEEEEcCC--------------------------HHHHHHHHHHCCEEEEECCCCCCCCCeEEEEcCCHH
Confidence            55555555432                          11556667777655433221 123568999987653

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=98.69  E-value=8.5e-07  Score=77.64  Aligned_cols=193  Identities=14%  Similarity=0.052  Sum_probs=105.8

Q ss_pred             cEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438            5 PLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC   80 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~   80 (239)
                      ..+|++.....+.|.+.|    +++|.++|++||+++++|.+|++.--...-+.....++. .|.++++  |.+++....
T Consensus       180 ~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~~~a~~~~gv~-PDi~t~g--K~lg~G~p~  256 (395)
T PRK03715        180 TVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFAYELSGIE-PDIMTLG--KGIGGGVPL  256 (395)
T ss_pred             ceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcchhhHhhcCCC-Cceeeeh--hhhhCCcce
Confidence            456777777788888887    999999999999999999999852111110000122443 8987764  998875556


Q ss_pred             eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC---CCeE
Q 048438           81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD---KRFE  157 (239)
Q Consensus        81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~---~g~~  157 (239)
                      |.++.++ +.. .....      ....++ .+.+.......++++.+..   ++..++..++.++|+++|+++   .++.
T Consensus       257 ~av~~~~-~i~-~~~~~------~~~~T~-~g~pl~~aaala~L~~l~~---~~l~~~~~~~g~~l~~~L~~l~~~~~i~  324 (395)
T PRK03715        257 AALLAKA-EVA-VFEAG------DQGGTY-NGNPLMTAVGVAVISQLLA---PGFLEGVRARGEYLKEKLLELSEERGLE  324 (395)
T ss_pred             EEEEEcc-ccc-cccCC------CcCCCC-CCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHhhcCCcC
Confidence            7776654 332 11100      000111 1222223333445555532   345566678888888888753   1332


Q ss_pred             EEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCCc
Q 048438          158 VVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTEE  237 (239)
Q Consensus       158 ~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~  237 (239)
                      -+ .....|+.+.+....                    ...+. +....+.++|.+...    .+...||+++....|++
T Consensus       325 ~v-rG~Glm~~i~l~~~~--------------------~~~~~-~~~~~~~~~Gi~~~~----~~~~~lR~~p~l~~t~~  378 (395)
T PRK03715        325 GE-RGEGLLRALLLGKDI--------------------GPQIV-EKARDMQPDGLLLNA----PRPNLLRFMPALNVTTE  378 (395)
T ss_pred             eE-EcceeEEEEEecCch--------------------HHHHH-HHHHhccCCCEEEee----cCCCEEEEeCCcccCHH
Confidence            11 123456666664310                    01111 222223334644322    13368999988877765


Q ss_pred             C
Q 048438          238 R  238 (239)
Q Consensus       238 ~  238 (239)
                      |
T Consensus       379 e  379 (395)
T PRK03715        379 E  379 (395)
T ss_pred             H
Confidence            4

>PRK07309 aromatic amino acid aminotransferase; Validated

Probab=98.69  E-value=1.1e-06  Score=76.77  Aligned_cols=195  Identities=12%  Similarity=0.121  Sum_probs=101.4

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--   79 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--   79 (239)
                      +-+|+++..+|.||.+-+   +++|+++|++||+++++|.+++.....-............--++..+++|.++.| |  
T Consensus       167 ~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~-GlR  245 (391)
T PRK07309        167 LKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEYLPDQTILINGLSKSHAMT-GWR  245 (391)
T ss_pred             eEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHhccCCEEEEecChhhccCc-cce
Confidence            456777777899999755   8889999999999999999987543311111111110111236778999997655 4  


Q ss_pred             ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Q 048438           80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVV  159 (239)
Q Consensus        80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~  159 (239)
                      +|+++. +++.+......       ..+.......+....+...++. +........++..+..+++.+.|++. ++++.
T Consensus       246 vG~~v~-~~~~~~~~~~~-------~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~  315 (391)
T PRK07309        246 IGLIFA-PAEFTAQLIKS-------HQYLVTAATTMAQFAAVEALTN-GKDDALPMKKEYIKRRDYIIEKMTDL-GFKII  315 (391)
T ss_pred             eEEEEe-CHHHHHHHHHH-------HhhcccCCChHHHHHHHHHHhC-ChhHHHHHHHHHHHHHHHHHHHHHHC-CCeec
Confidence            566664 33443332210       0011001111111111122221 11112233344456677888888876 77765


Q ss_pred             cCCCeeE-EEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHH-hcCcEEEEEEEE--CCEeEEEEEecC
Q 048438          160 FPCHFAV-VCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESIN-ASGKAYMTNVVL--GGIYAIRFATGA  232 (239)
Q Consensus       160 ~~~~~~i-v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~--~g~~~lR~~~~~  232 (239)
                       ++..+. +.+++++...                     .....+.+++. +.|..+.+....  .+..++|+++..
T Consensus       316 -~p~gg~~~~~~l~~~~~---------------------~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~  370 (391)
T PRK07309        316 -KPDGAFYIFAKIPAGYN---------------------QDSFKFLQDFARKKAVAFIPGAAFGPYGEGYVRLSYAA  370 (391)
T ss_pred             -CCCeeEEEEEECCCCCC---------------------CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC
Confidence             344443 3335543110                     00124555544 445554444332  235799999875

>PRK06290 aspartate aminotransferase; Provisional

Probab=98.68  E-value=1.5e-06  Score=76.55  Aligned_cols=203  Identities=15%  Similarity=-0.010  Sum_probs=110.3

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccc--cCCCCCcceEEEcCcccCCCcc-
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--IDGVEGADSFSLNAHKWFFATL-   78 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~~~~~~~Ds~~~~~hK~l~~P~-   78 (239)
                      +-+|+++.-+|.||.+.+   +++|.++|++||+++++|.+|+-..... .....  ..+....+.+..++.|.++.|. 
T Consensus       180 ~k~i~l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~-~~~s~~~~~~~~~~~I~i~SfSK~~g~~Gl  258 (410)
T PRK06290        180 AKLLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDG-KPLSFLSVPGAKEVGVEIHSLSKAYNMTGW  258 (410)
T ss_pred             ceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCC-CCcChhcCCCccccEEEEeechhhcCCchh
Confidence            456666777899999988   5778888999999999999987543211 11111  1111235688999999986442 


Q ss_pred             cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438           79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGM-ENLRHFLRSHVNMARLFERLVSGDKRFE  157 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-~g~~~~~~~~~~la~~l~~~l~~~~g~~  157 (239)
                      =+|+++. .++.+.......    .  .+.  .+.  ..+....+...+.. +-+++..++..+..+++.+.|++. |+.
T Consensus       259 RiG~ii~-~~~l~~~l~~~~----~--~~~--~~~--~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~  326 (410)
T PRK06290        259 RLAFVVG-NELIVKAFATVK----D--NND--SGQ--FIAIQKAGIYALDHPEITEKIREKYSRRLDKLVKILNEV-GFK  326 (410)
T ss_pred             heEeEEe-CHHHHHHHHHHH----h--ccc--cCC--cHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHHHhC-CCe
Confidence            2566664 333332221000    0  000  000  01111122222211 223445556667788899999886 777


Q ss_pred             EEcCCCeeEEEE-EEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCC
Q 048438          158 VVFPCHFAVVCF-RVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTE  236 (239)
Q Consensus       158 ~~~~~~~~iv~f-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~  236 (239)
                      +. +++.+...| ++++....            ....    .-...+.+.|.+++.+.+.+... -..++|+++..+..+
T Consensus       327 ~~-~p~g~f~l~v~lp~~~~~------------~~~~----~~~~~~~~~Ll~~~~v~~~p~~~-~~~~lRi~~~~~~~~  388 (410)
T PRK06290        327 AE-MPGGTFYLYVKAPKGTKS------------GIKF----ENAEEFSQYLIKEKLISTVPWDD-AGHFLRFSVTFEAKD  388 (410)
T ss_pred             ec-CCCeeeEEEEECCCcccc------------CCCC----CCHHHHHHHHHHhCCEEEECCcc-ccCeEEEEEEccccc
Confidence            55 455565543 55432100            0000    01226777888787765433111 124899999876655


Q ss_pred             cC
Q 048438          237 ER  238 (239)
Q Consensus       237 ~~  238 (239)
                      +|
T Consensus       389 ~~  390 (410)
T PRK06290        389 EE  390 (410)
T ss_pred             cc
Confidence            54

>PRK07777 aminotransferase; Validated

Probab=98.68  E-value=7.4e-07  Score=77.71  Aligned_cols=196  Identities=14%  Similarity=0.067  Sum_probs=104.9

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccc--cCCCCCcceEEEcCcccCCCccc
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--IDGVEGADSFSLNAHKWFFATLD   79 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~~~~~~~Ds~~~~~hK~l~~P~g   79 (239)
                      +-+|+++...|.||.+.+   +++|.++|+++++++++|.+|+.....-......  ..+....+++..+++|.++.| |
T Consensus       160 ~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~-G  238 (387)
T PRK07777        160 TRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKTFNVT-G  238 (387)
T ss_pred             cEEEEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcEEEEeechhhccCc-C
Confidence            345666677889999754   8889999999999999999986533211111111  112223678899999998755 4


Q ss_pred             --ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438           80 --CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE  157 (239)
Q Consensus        80 --~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~  157 (239)
                        +|+++. +++.+......    .....+.  .+.. ....+...+.. +.+-+++..+...+..+++.+.|++. +++
T Consensus       239 lRiG~~~~-~~~l~~~~~~~----~~~~~~~--~~~~-~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~  308 (387)
T PRK07777        239 WKIGWACG-PAPLIAAVRAA----KQYLTYV--GGAP-FQPAVAHALDH-EDAWVAALRDSLQAKRDRLAAGLAEA-GFE  308 (387)
T ss_pred             ceeEEEec-CHHHHHHHHHH----HhhcccC--CCCH-HHHHHHHHHhC-CcHHHHHHHHHHHHHHHHHHHHHHhC-CCC
Confidence              566664 33333222100    0000010  1111 11111112221 23334455566678888899999886 777


Q ss_pred             EEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhc-CcEEEEEEEE-----CCEeEEEEEec
Q 048438          158 VVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINAS-GKAYMTNVVL-----GGIYAIRFATG  231 (239)
Q Consensus       158 ~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~-----~g~~~lR~~~~  231 (239)
                      +..+.....+.+++++.+.                     .....+.++|.++ |..+.+...+     .+..++|+++.
T Consensus       309 ~~~~~g~~~~~~~~~~~~~---------------------~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri~~~  367 (387)
T PRK07777        309 VHDSAGTYFLCADPRPLGY---------------------DDGTEFCRALPERVGVAAIPMSVFYDPADAWNHLVRFAFC  367 (387)
T ss_pred             ccCCCcceEEEecccccCC---------------------CCHHHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEEEEec
Confidence            6533333334445542110                     0012566677544 5544443322     12468999987


Q ss_pred             C
Q 048438          232 A  232 (239)
Q Consensus       232 ~  232 (239)
                      .
T Consensus       368 ~  368 (387)
T PRK07777        368 K  368 (387)
T ss_pred             C
Confidence            5

>PRK01688 histidinol-phosphate aminotransferase; Provisional

Probab=98.68  E-value=1.6e-07  Score=80.85  Aligned_cols=189  Identities=13%  Similarity=0.050  Sum_probs=107.0

Q ss_pred             EEEEEecCCCCcccccChhHHHHHHHHh--CCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-ccceE
Q 048438            6 LFLCATIGTTAITAVDPLKPLCDVAKQF--GIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-LDCCC   82 (239)
Q Consensus         6 ~~vv~t~gtt~~G~i~pl~~i~~i~~~~--gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~g~   82 (239)
                      -+|+++.-+|.||.+.+.++|.++++..  +++++||.||.-... .......+...+ -=++.-+++|+++.| .-+|.
T Consensus       147 ~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~~~~vivDEay~~f~~-~~s~~~~~~~~~-n~iv~rSfSK~~glaGlRiGy  224 (351)
T PRK01688        147 KVVYVCSPNNPTGNLINPQDLRTLLELTRGKAIVVADEAYIEFCP-QASLAGWLAEYP-HLVILRTLSKAFALAGLRCGF  224 (351)
T ss_pred             cEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhcCC-CCChHHHHhhCC-CEEEEecchHhhcCHHHHHhH
Confidence            4566778899999999988877777542  689999999854321 111111111111 124567999987533 22476


Q ss_pred             EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcCC
Q 048438           83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPC  162 (239)
Q Consensus        83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~~  162 (239)
                      ++. +++.+.......      ..|..  +. ........++..-+.+-+++.+++..+..+++.+.|+++++++.+.++
T Consensus       225 ~i~-~~~~i~~l~~~~------~~~~v--~~-~~~~~a~~~L~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~ps  294 (351)
T PRK01688        225 TLA-NEEVINLLLKVI------APYPL--ST-PVADIAAQALSPQGIAAMRERVAEINANRQWLIAALKEIPCVEQVFDS  294 (351)
T ss_pred             HhC-CHHHHHHHHhcc------CCCCC--CH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeECCC
Confidence            665 344433221100      01110  10 000111112221123445666666677788999999988787655677


Q ss_pred             CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECC-EeEEEEEecC
Q 048438          163 HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGG-IYAIRFATGA  232 (239)
Q Consensus       163 ~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g-~~~lR~~~~~  232 (239)
                      ..|.+.+++++.                          ..+.+.|.++|..+.......| ..++|+++..
T Consensus       295 ~~nfi~~~~~~~--------------------------~~l~~~L~~~gi~vr~~~~~~~~~~~iRis~~~  339 (351)
T PRK01688        295 ETNYILARFTAS--------------------------SAVFKSLWDQGIILRDQNKQPGLSNCLRITIGT  339 (351)
T ss_pred             CCcEEEEEcCCH--------------------------HHHHHHHHHCCeEEEECCCcCCCCCeEEEeCCC
Confidence            777777766421                          2567777777776554332222 4689999874

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase

Probab=98.66  E-value=1.5e-06  Score=75.09  Aligned_cols=191  Identities=11%  Similarity=0.027  Sum_probs=102.2

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccC----C-CCCcceEEEcCcccCCC
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFID----G-VEGADSFSLNAHKWFFA   76 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~----~-~~~~Ds~~~~~hK~l~~   76 (239)
                      +-+|+.+..+|.||...+   +++|+++|+++|+++++|.+|+.....-+... .+.    + ...--++..++.|.++.
T Consensus       143 ~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~-~~~~~~~~~~~~~vi~~~S~SK~~~~  221 (357)
T TIGR03539       143 PDLIWLNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECYLELGWEGRPVS-ILDPRVCGGDHTGLLAVHSLSKRSNL  221 (357)
T ss_pred             ccEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCCCcc-ceecccCCCccccEEEEeccccccCC
Confidence            456777778899999776   66788999999999999999864221100000 010    0 00113667799999755


Q ss_pred             ccc-ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHhCCC
Q 048438           77 TLD-CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYG-MENLRHFLRSHVNMARLFERLVSGDK  154 (239)
Q Consensus        77 P~g-~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~g~~~~~~~~~~la~~l~~~l~~~~  154 (239)
                      |.- +|.++. +++.+......       ...   .+.....+....+...+. ...+++..+...+..+++.+.|++. 
T Consensus       222 ~G~R~G~~i~-~~~~~~~~~~~-------~~~---~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~-  289 (357)
T TIGR03539       222 AGYRAGFVAG-DPALVAELLTV-------RKH---AGLMVPAPVQAAMVAALGDDGHVAEQKARYAARRAQLKPALEKA-  289 (357)
T ss_pred             CceeEEEEec-CHHHHHHHHHH-------Hhh---cccCCCHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHc-
Confidence            522 465553 33333222100       000   000011122222222232 2334445555567777888888875 


Q ss_pred             CeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEE--CCEeEEEEEecC
Q 048438          155 RFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVL--GGIYAIRFATGA  232 (239)
Q Consensus       155 g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~--~g~~~lR~~~~~  232 (239)
                      |+++. +++.++..+.-.+..                        ...+.++|.++|..+......  .+..++|+++.+
T Consensus       290 g~~~~-~p~~~~~~~~~~~~~------------------------~~~~~~~l~~~gV~v~pg~~f~~~~~~~iRis~~~  344 (357)
T TIGR03539       290 GFRID-HSEAGLYLWATRGED------------------------AWDTVDRLAELGILVAPGDFYGPAGSQHVRVALTA  344 (357)
T ss_pred             CCCCc-CCCccEEEEEECCCC------------------------HHHHHHHHHhCCEEECCccccCCCCCCeEEEEecC
Confidence            77654 455665444432211                        114556676666654443322  245799999876


Q ss_pred             C
Q 048438          233 T  233 (239)
Q Consensus       233 ~  233 (239)
                      +
T Consensus       345 ~  345 (357)
T TIGR03539       345 T  345 (357)
T ss_pred             C
Confidence            3

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>TIGR03537 DapC succinyldiaminopimelate transaminase

Probab=98.66  E-value=1e-06  Score=75.76  Aligned_cols=189  Identities=11%  Similarity=0.007  Sum_probs=103.0

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCC-CcceEEEcCcccCCCcc-c
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVE-GADSFSLNAHKWFFATL-D   79 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~-~~Ds~~~~~hK~l~~P~-g   79 (239)
                      +-+++++.-+|.||.+.|   +++|+++|+++|+++++|.+|+-....-+ ... ....+ .-..+..+++|.++.|. -
T Consensus       137 ~~~i~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~-~~~-~~~~~~~~~i~~~s~SK~~g~~GlR  214 (350)
T TIGR03537       137 TKIVWINYPHNPTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFGEP-PHS-ALEVGIENVLAFHSLSKRSGMTGYR  214 (350)
T ss_pred             cEEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCcEEEEeccccccccCCC-CCc-hhhcCcCCEEEEeecccccCCcccc
Confidence            456777778899999888   88999999999999999999874322111 100 11111 12355669999876552 2


Q ss_pred             ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 048438           80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNY-GMENLRHFLRSHVNMARLFERLVSGDKRFEV  158 (239)
Q Consensus        80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~  158 (239)
                      .|+++. ++.........    .  ..+..  +..  .+....+...+ ..+.++++.++..+..+.+.+.|++. |+++
T Consensus       215 iG~~~~-~~~~~~~~~~~----~--~~~~~--~~~--~~~q~~~~~~l~~~~~~~~~r~~l~~~~~~~~~~l~~~-g~~~  282 (350)
T TIGR03537       215 SGFVAG-DEKLISFLRKL----R--ANFGV--ASP--DFVQAAAKAAWSDDNHVLERRKIFKRKRDLFIEFFNKV-GLEY  282 (350)
T ss_pred             ceeeec-CHHHHHHHHHH----H--Hhhcc--CCC--HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHC-CCcc
Confidence            565543 33333222110    0  00110  111  11111111111 12334455566667778888888875 7765


Q ss_pred             EcCCCeeE-EEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEE--CCEeEEEEEec
Q 048438          159 VFPCHFAV-VCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVL--GGIYAIRFATG  231 (239)
Q Consensus       159 ~~~~~~~i-v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~--~g~~~lR~~~~  231 (239)
                      . ++..+. +.+.+++..                +       ...+.+.|.++|.........  .+..++|+++.
T Consensus       283 ~-~~~g~~~~~~~~~~~~----------------~-------~~~l~~~L~~~gv~v~~g~~f~~~~~~~~Ri~~~  334 (350)
T TIGR03537       283 L-YPDATFYLWVKVPSGI----------------D-------AKDYALRLLENGIVVAPGENFGSGEEGYVRVALV  334 (350)
T ss_pred             c-CCCeEEEEEEECCCCC----------------C-------HHHHHHHHHHCCEEEcCchhhCCCCCCEEEEEec
Confidence            5 444443 445554321                0       125667777777555443333  23468999975

Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=98.66  E-value=3.1e-06  Score=73.48  Aligned_cols=189  Identities=12%  Similarity=0.064  Sum_probs=98.3

Q ss_pred             cEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438            5 PLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC   80 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~   80 (239)
                      +.+|++....+..|.+.+    +++|.++|++||+++++|.+|.+.......+.....++. .|.+  ++.|.+++-...
T Consensus       168 ~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~~~~~~~~~-~di~--t~sK~l~~G~~i  244 (377)
T PRK02936        168 VAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQFGLD-PDIV--TVAKGLGNGIPV  244 (377)
T ss_pred             eEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhhCCC-CcEE--EEcccccCCCcc
Confidence            345666666666666533    999999999999999999998642111100000011332 5755  479998742236


Q ss_pred             eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhC----CCCe
Q 048438           81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSG----DKRF  156 (239)
Q Consensus        81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~----~~g~  156 (239)
                      |++..+ +++.......      ....+. .+.+........+++.+..   ++..++..++.+++++.|++    .+.+
T Consensus       245 g~v~~~-~~~~~~~~~~------~~~~t~-~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~  313 (377)
T PRK02936        245 GAMIGK-KELGTAFGPG------SHGSTF-GGNPLAMAAAKEVLQVIKQ---PSFLEEVQEKGEYFLQKLQEELEHLECV  313 (377)
T ss_pred             EEEEEc-HHHHhhccCC------CCCCCC-CCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhhCCcE
Confidence            666543 3333222110      000011 1112222333334444311   23445555666777776665    2222


Q ss_pred             EEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCC
Q 048438          157 EVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTE  236 (239)
Q Consensus       157 ~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~  236 (239)
                      ..+. ....++.+.+...                         ...+.+.|.++|.+...    .|..++|+++....|+
T Consensus       314 ~~v~-~~g~~~~i~~~~~-------------------------~~~~~~~l~~~gv~v~~----~g~~~lRi~p~~~~~~  363 (377)
T PRK02936        314 KNIR-GKGLMIGIECTEE-------------------------VAPVIEQLREEGLLVLS----AGPNVIRLLPPLVVTK  363 (377)
T ss_pred             EeEe-ecceEEEEEecch-------------------------HHHHHHHHHHCCeEEec----CCCCEEEEECCcccCH
Confidence            2221 2334566665431                         23566777777765543    3557899997655554


Q ss_pred             c
Q 048438          237 E  237 (239)
Q Consensus       237 ~  237 (239)
                      +
T Consensus       364 ~  364 (377)
T PRK02936        364 E  364 (377)
T ss_pred             H
Confidence            3

>PRK07681 aspartate aminotransferase; Provisional

Probab=98.65  E-value=1.5e-06  Score=76.22  Aligned_cols=195  Identities=13%  Similarity=-0.003  Sum_probs=106.2

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCccccccc--CCCCCcceEEEcCcccCCCc-c
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFI--DGVEGADSFSLNAHKWFFAT-L   78 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~--~~~~~~Ds~~~~~hK~l~~P-~   78 (239)
                      +-+|+.+.-+|.||.+.+   +++|+++|++||+++++|.+|+-....-.......  .+...-.++..+++|.++.| .
T Consensus       167 ~k~v~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~Gl  246 (399)
T PRK07681        167 AKMMILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYSLAGS  246 (399)
T ss_pred             ceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCcccEEEEeecccccCCccc
Confidence            456677777899999988   77888999999999999999975432111110101  11111346677999987533 2


Q ss_pred             cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 048438           79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEV  158 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~  158 (239)
                      -+|+++. +++.+......    .....++  .+ .........+++. +.+-+++..+...+..+++.+.|++. |+++
T Consensus       247 RiG~~i~-~~~l~~~~~~~----~~~~~~~--~s-~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~  316 (399)
T PRK07681        247 RIGYMIG-NEEIVRALTQF----KSNTDYG--VF-LPIQKAACAALRN-GAAFCEKNRGIYQERRDTLVDGFRTF-GWNV  316 (399)
T ss_pred             eeEEEec-CHHHHHHHHHH----HhhcccC--CC-HHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHC-CCcc
Confidence            2677764 34443322110    0000011  00 0111111222221 22334455555667778888899886 7876


Q ss_pred             EcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHh-cCcEEEEEEEE--CCEeEEEEEecC
Q 048438          159 VFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINA-SGKAYMTNVVL--GGIYAIRFATGA  232 (239)
Q Consensus       159 ~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~--~g~~~lR~~~~~  232 (239)
                      ..+...+.+.+++++..                +       ...+.+.+.+ .|..+.+....  .+..++|+++..
T Consensus       317 ~~p~~g~f~~~~l~~~~----------------~-------~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~  370 (399)
T PRK07681        317 DKPAGSMFVWAEIPKGW----------------T-------SLSFAYALMDRANVVVTPGHAFGPHGEGFVRIALVQ  370 (399)
T ss_pred             cCCCeeeEEEEECCCCC----------------C-------HHHHHHHHHHhCCEEEeCChhhCcCCCCeEEEEecC
Confidence            55555555666665321                0       1245566665 45554443322  234689999874

>PRK05387 histidinol-phosphate aminotransferase; Provisional

Probab=98.65  E-value=2e-06  Score=73.93  Aligned_cols=187  Identities=13%  Similarity=0.020  Sum_probs=108.2

Q ss_pred             EEEEecCCCCcccccChhHHHHHHHHh-CCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-ccceEEE
Q 048438            7 FLCATIGTTAITAVDPLKPLCDVAKQF-GIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-LDCCCLW   84 (239)
Q Consensus         7 ~vv~t~gtt~~G~i~pl~~i~~i~~~~-gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~g~l~   84 (239)
                      +|+.+..+|.||.+.|.+++.++++.+ ++++++|.+|+...  ...........+ -.+++.+++|.++.| .-+|+++
T Consensus       147 ~v~~~~P~NPtG~~~~~~~~~~l~~~~~~~~livDe~y~~~~--~~~~~~~~~~~~-~~i~~~S~SK~~~~~GlR~G~~~  223 (353)
T PRK05387        147 GIIFPNPNAPTGIALPLAEIERILAANPDSVVVIDEAYVDFG--GESAIPLIDRYP-NLLVVQTFSKSRSLAGLRVGFAI  223 (353)
T ss_pred             EEEEeCCCCCCCCCCCHHHHHHHHHhCCCcEEEEeCcccccC--CcchHHHHhhCC-CEEEEEehhHhhcchhhhceeee
Confidence            566777899999999999999999886 99999999985321  111111111112 458888999987644 2367776


Q ss_pred             eeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcCCC
Q 048438           85 ATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYG-MENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCH  163 (239)
Q Consensus        85 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~~~  163 (239)
                      . +++.+........ ..  ..++      ...+....+...+. .+.+++..++..+..+++.+.|++. |+++. ++.
T Consensus       224 ~-~~~~~~~l~~~~~-~~--~~~~------~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~  291 (353)
T PRK05387        224 G-HPELIEALNRVKN-SF--NSYP------LDRLAQAGAIAAIEDEAYFEETRAKVIATRERLVEELEAL-GFEVL-PSK  291 (353)
T ss_pred             c-CHHHHHHHHHhhc-cC--CCCC------cCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCeEC-CCc
Confidence            5 3443332211000 00  0011      11122222222222 2345566677778888999999887 88754 556


Q ss_pred             eeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecC
Q 048438          164 FAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGA  232 (239)
Q Consensus       164 ~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~  232 (239)
                      .+.+.+.+++..                        ...+.+.|.++|..+..........++|++++.
T Consensus       292 ~~~~~~~~~~~~------------------------~~~~~~~l~~~gi~v~~~~~~~~~~~iRis~~~  336 (353)
T PRK05387        292 ANFVFARHPSHD------------------------AAELAAKLRERGIIVRHFNKPRIDQFLRITIGT  336 (353)
T ss_pred             CcEEEEECCCCC------------------------HHHHHHHHHHCCEEEEECCCCCCCCeEEEEeCC
Confidence            667666654311                        125566676677654322111235689999863

>PRK07550 hypothetical protein; Provisional

Probab=98.65  E-value=9.9e-07  Score=76.88  Aligned_cols=198  Identities=13%  Similarity=0.093  Sum_probs=102.7

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCC--CCCcceEEEcCcccCCCc-c
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDG--VEGADSFSLNAHKWFFAT-L   78 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~--~~~~Ds~~~~~hK~l~~P-~   78 (239)
                      +-+|+++.-+|.+|.+.|   +++|+++|++||+++++|.+++...............  ...-..++.+++|.++.| .
T Consensus       164 ~~~v~~~~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~  243 (386)
T PRK07550        164 TRAIALVTPNNPTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPDWDDTLVHLYSFSKSYALTGH  243 (386)
T ss_pred             CcEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCCccccEEEEecchhhccCccc
Confidence            345556667889999877   7889999999999999999987432110000001111  011234578999998644 3


Q ss_pred             cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 048438           79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEV  158 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~  158 (239)
                      .+|+++.. ++.+......    ..  ..... ........+..++..+ .+-.++..++..+..+++.+.|++.+++.+
T Consensus       244 RiG~i~~~-~~~~~~~~~~----~~--~~~~~-~s~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~  314 (386)
T PRK07550        244 RVGAVVAS-PARIAEIEKF----MD--TVAIC-APRIGQIAVAWGLPNL-ADWRAGNRAEIARRRDAFRAVFARLPGWEL  314 (386)
T ss_pred             ceEeeecC-HHHHHHHHHH----Hh--hcccC-CCcHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHHHHHHHhCCCcee
Confidence            46766653 3333222110    00  00000 0111111122222211 122333445556777788888887666654


Q ss_pred             EcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHh-cCcEEEEEEEE--CCEeEEEEEecCCC
Q 048438          159 VFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINA-SGKAYMTNVVL--GGIYAIRFATGATL  234 (239)
Q Consensus       159 ~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~--~g~~~lR~~~~~~~  234 (239)
                      . +...+.+.++++..+.                    +  ...+.++|.+ .|.........  .+..++|+++..+.
T Consensus       315 ~-~~g~~~~~~~~~~~~~--------------------~--~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~  370 (386)
T PRK07550        315 L-ASGAYFAYVRHPFPDR--------------------P--SREVARRLAKEAGILCLPGTMFGPGQEGYLRLAFANAD  370 (386)
T ss_pred             C-CCceEEEEecCCCCCC--------------------C--HHHHHHHHHHhcCEEEeCchhhCCCCCCEEEEEeecCC
Confidence            3 4444555555543111                    0  1256666654 45544443322  23568999987543

>PRK05942 aspartate aminotransferase; Provisional

Probab=98.64  E-value=1.1e-06  Score=76.76  Aligned_cols=194  Identities=13%  Similarity=0.074  Sum_probs=104.1

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccc--cCCCCCcceEEEcCcccCCCc-c
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--IDGVEGADSFSLNAHKWFFAT-L   78 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~~~~~~~Ds~~~~~hK~l~~P-~   78 (239)
                      +-+|+++.-+|.||.+.+   +++|.++|+++|+++++|.+++-....-......  +.+......++.++.|.++.| .
T Consensus       171 ~k~i~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~~Gl  250 (394)
T PRK05942        171 AKILYFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYNMAGW  250 (394)
T ss_pred             ceEEEEcCCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccccEEEEecchhccCChhh
Confidence            456666777899999988   7889999999999999999986433211000000  111112345677889977433 3


Q ss_pred             cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 048438           79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEV  158 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~  158 (239)
                      .+|+++. +++.+....... ..   ..+...   ......+..+++. ..+.+++..++..+..+++.+.|++. ++++
T Consensus       251 RiG~i~~-~~~l~~~l~~~~-~~---~~~~~~---~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~  320 (394)
T PRK05942        251 RVGFVVG-NRHIIQGLRTLK-TN---LDYGIF---SALQKAAETALQL-PDSYLQQVQERYRTRRDFLIQGLGEL-GWNI  320 (394)
T ss_pred             heeeeec-CHHHHHHHHHHH-hh---cccCCC---HHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHC-CCee
Confidence            4788775 334433221100 00   000000   0111112222321 23445555666667788888889875 7775


Q ss_pred             EcCCCeeE-EEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHH-hcCcEEEEEEEE--CCEeEEEEEecC
Q 048438          159 VFPCHFAV-VCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESIN-ASGKAYMTNVVL--GGIYAIRFATGA  232 (239)
Q Consensus       159 ~~~~~~~i-v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~--~g~~~lR~~~~~  232 (239)
                      . +++.++ +.++++.. .              .+    .    .+..++. +.|........+  .+..++|+++..
T Consensus       321 ~-~~~~~~f~~~~~~~~-~--------------~~----~----~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~~  374 (394)
T PRK05942        321 P-PTKATMYLWVPCPVG-M--------------GS----T----DFALNVLQKTGVVVTPGNAFGEGGEGYVRISLIA  374 (394)
T ss_pred             c-CCCeeeEEEEECCCC-C--------------CH----H----HHHHHHHHHCCEEEeCChhhCcCCCCeEEEEecC
Confidence            5 445553 44555431 1              00    1    2333333 445554443333  245799999863

>PRK08912 hypothetical protein; Provisional

Probab=98.64  E-value=1e-06  Score=76.78  Aligned_cols=197  Identities=12%  Similarity=0.074  Sum_probs=106.8

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccc--cCCCCCcceEEEcCcccCCCccc
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--IDGVEGADSFSLNAHKWFFATLD   79 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~~~~~~~Ds~~~~~hK~l~~P~g   79 (239)
                      +-+|+++..+|.||.+.+   +++|.++|++|++++++|.+|+.....-......  ..++...+++..+++|.++ ..|
T Consensus       160 ~~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g-~~G  238 (387)
T PRK08912        160 TKAVLLNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFS-LTG  238 (387)
T ss_pred             ceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCceEEEeechhhcc-CcC
Confidence            346667788999999877   6778999999999999999986432211011111  1122235788999999865 345


Q ss_pred             --ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438           80 --CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE  157 (239)
Q Consensus        80 --~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~  157 (239)
                        +|+++.. ++.+.......    ....+.  .+. .....+...+.. ..+-+++..++..+..+++.+.|++. |++
T Consensus       239 lRiG~~~~~-~~~~~~l~~~~----~~~~~~--~~~-~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~  308 (387)
T PRK08912        239 WKVGFVCAA-PPLLRVLAKAH----QFLTFT--TPP-NLQAAVAYGLGK-PDDYFEGMRADLARSRDRLAAGLRRI-GFP  308 (387)
T ss_pred             ceeEEEecC-HHHHHHHHHHH----hhcccc--CCh-HHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHhC-CCc
Confidence              7877763 33332221100    000011  000 011111112211 12233455556667888899999886 777


Q ss_pred             EEcCCCee-EEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHh-cCcEEEEEEEE----CCEeEEEEEec
Q 048438          158 VVFPCHFA-VVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINA-SGKAYMTNVVL----GGIYAIRFATG  231 (239)
Q Consensus       158 ~~~~~~~~-iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~----~g~~~lR~~~~  231 (239)
                      +. +++.+ .+.+.+++.+..                    .-...+.+.|.+ .|....+....    .+..++|+++.
T Consensus       309 ~~-~~~g~~~l~~~l~~~~~~--------------------~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~iRl~~~  367 (387)
T PRK08912        309 VL-PSQGTYFLTVDLAPLGLA--------------------EDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCFA  367 (387)
T ss_pred             cc-CCCcceEEEecccccCCC--------------------CCHHHHHHHHHhcCCEEEecchhhCCCCCCCCEEEEEEe
Confidence            65 44444 455566531100                    001255566544 45554443332    13479999988


Q ss_pred             CC
Q 048438          232 AT  233 (239)
Q Consensus       232 ~~  233 (239)
                      .+
T Consensus       368 ~~  369 (387)
T PRK08912        368 KR  369 (387)
T ss_pred             CC
Confidence            64

>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional

Probab=98.63  E-value=6.5e-07  Score=79.31  Aligned_cols=142  Identities=11%  Similarity=0.099  Sum_probs=80.9

Q ss_pred             EEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEc--CcccCCCcccceEE
Q 048438            6 LFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLN--AHKWFFATLDCCCL   83 (239)
Q Consensus         6 ~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~--~hK~l~~P~g~g~l   83 (239)
                      -+|+.++   ..|...++++|.++|+++|+++++|+||+.|+..-...   +-.+  .|.-++|  ..|.+.+-.| |++
T Consensus       161 kaVi~~~---~~G~p~dl~~I~~la~~~gi~vIeDaa~a~G~~~~g~~---~G~~--gd~~~fSf~~~k~~~~geG-G~l  231 (438)
T PRK15407        161 KAIMIAH---TLGNPFDLAAVKAFCDKHNLWLIEDNCDALGSTYDGRM---TGTF--GDIATLSFYPAHHITMGEG-GAV  231 (438)
T ss_pred             eEEEEeC---CCCChhhHHHHHHHHHHCCCEEEEECccchhhhcCCee---eecc--CceEEEeCCCCCCccccCc-eEE
Confidence            4455554   46778899999999999999999999999887643211   1112  3555454  4466654333 777


Q ss_pred             EeeCcccccccc--cCCCC--------------ccC---------C-CCce-ecCCCCCChHHHHHHHHHhCHHHHHHHH
Q 048438           84 WATNPEYLKNKA--TESKP--------------VVD---------Y-KDWQ-ITLSRSFRSLKLWFVIRNYGMENLRHFL  136 (239)
Q Consensus        84 ~~~~~~~l~~~~--~~~~~--------------~~~---------~-~~~~-~~~~~~~~~~~~~~~l~~~g~~g~~~~~  136 (239)
                      ++++++......  ...+.              .+.         + ..+. ...|-.++--.+.+++.....+.+++++
T Consensus       232 ~t~d~~l~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~rmsel~AAig~~qL~~l~~~~  311 (438)
T PRK15407        232 FTNDPLLKKIIESFRDWGRDCWCAPGCDNTCGKRFGWQLGELPFGYDHKYTYSHLGYNLKITDMQAAIGLAQLEKLPGFI  311 (438)
T ss_pred             EECCHHHHHHHHHHHHhCcccccccccccccccccccccccccccccccccccccccccCccHHHHHHHHHHHHHHHHHH
Confidence            776653321110  00000              000         0 0000 0112222222233333333346778888


Q ss_pred             HHHHHHHHHHHHHHhCCCCe
Q 048438          137 RSHVNMARLFERLVSGDKRF  156 (239)
Q Consensus       137 ~~~~~la~~l~~~l~~~~g~  156 (239)
                      ++.+++++++.+.|+.+++.
T Consensus       312 ~~R~~~a~~y~~~L~~~~~~  331 (438)
T PRK15407        312 EARKANFAYLKEGLASLEDF  331 (438)
T ss_pred             HHHHHHHHHHHHHhccCCCc
Confidence            88999999999999887653

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=98.63  E-value=4.6e-06  Score=73.19  Aligned_cols=193  Identities=12%  Similarity=0.067  Sum_probs=99.7

Q ss_pred             cEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCccccc-ccCCCCCcceEEEcCcccCCCccc
Q 048438            5 PLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRH-FIDGVEGADSFSLNAHKWFFATLD   79 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~-~~~~~~~~Ds~~~~~hK~l~~P~g   79 (239)
                      +.+|++.-...+.|.+.|    +++|.++|++||+++++|.+|++. ........ ...++. .|.+  ++.|.+++-.-
T Consensus       185 ~aaiiiep~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-g~~g~~~~~~~~~~~-pdi~--s~sK~l~~G~r  260 (403)
T PRK05093        185 TCAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGM-GRTGDLFAYMHYGVT-PDIL--TSAKALGGGFP  260 (403)
T ss_pred             eEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCC-CCCccchhhhhcCCC-CCEE--EecccccCCcc
Confidence            445666644455555544    999999999999999999998842 11111100 012332 6755  45799874333


Q ss_pred             ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC-CeEE
Q 048438           80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK-RFEV  158 (239)
Q Consensus        80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~-g~~~  158 (239)
                      .|.++.. +++.......   .   ...+. ++.+........+++.+..   ++..++..++.+++.+.|+++. .+.+
T Consensus       261 ig~vv~~-~~i~~~l~~~---~---~~~t~-~~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~  329 (403)
T PRK05093        261 IGAMLTT-AEIASHFKVG---T---HGSTY-GGNPLACAVAEAVFDIINT---PEVLEGVKARRQRFVDGLQKINQKYGV  329 (403)
T ss_pred             eEEEEEc-HHHHhhcCCC---C---CCCCC-CCCHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence            7777663 3333322110   0   00111 1111222233334444422   2344566678888888887641 1112


Q ss_pred             EcCC-C-eeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCC
Q 048438          159 VFPC-H-FAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTE  236 (239)
Q Consensus       159 ~~~~-~-~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~  236 (239)
                      +..+ . ..++.+.+++..                     .....++.++|.++|.+...    .|..++|+++....|+
T Consensus       330 ~~~~~~~G~~~~~~l~~~~---------------------~~~~~~~~~~l~~~Gv~v~~----~g~~~lRl~~~~~~~~  384 (403)
T PRK05093        330 FSEIRGMGLLIGAELKPQY---------------------KGRARDFLNAAAEEGVMVLV----AGPDVLRFAPSLVIEE  384 (403)
T ss_pred             eEeEeeCceEEEEEecCcc---------------------hhHHHHHHHHHHHCCeEEec----CCCCEEEEeCCCCCCH
Confidence            2121 1 233444443310                     11234677778777755432    3557899987766554


Q ss_pred             c
Q 048438          237 E  237 (239)
Q Consensus       237 ~  237 (239)
                      +
T Consensus       385 ~  385 (403)
T PRK05093        385 A  385 (403)
T ss_pred             H
Confidence            3

>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)

Probab=98.62  E-value=1.4e-07  Score=80.54  Aligned_cols=159  Identities=13%  Similarity=0.148  Sum_probs=104.6

Q ss_pred             CCccEEEEEecCCCCcccccC-hhHHHHHHHHhCCEEEEecccccccccC-cccccccCCCCCcceEEEcCcccCCCccc
Q 048438            2 GLIPLFLCATIGTTAITAVDP-LKPLCDVAKQFGIWVHVDAAYAGSACIF-PEFRHFIDGVEGADSFSLNAHKWFFATLD   79 (239)
Q Consensus         2 g~~p~~vv~t~gtt~~G~i~p-l~~i~~i~~~~gi~lhvD~A~~~~~~~~-~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g   79 (239)
                      |..|.+.+.|+-+-..+..-| +.+|+++|++|||+.+|-+|||.-.-.+ ....... ...++|.++-+.-|.+.+|.|
T Consensus       152 G~~~iLcvltttscfapr~~D~i~~IakiC~~~~IPhlvNnAYgvQ~~~~~~~i~~a~-~~GRvda~vqS~dkNF~VPvG  230 (389)
T PF05889_consen  152 GADNILCVLTTTSCFAPRLPDDIEEIAKICKEYDIPHLVNNAYGVQSSKCMHLIQQAW-RVGRVDAFVQSTDKNFMVPVG  230 (389)
T ss_dssp             CGGGEEEEEEESSTTTTB----HHHHHHHHHHHT--EEEEGTTTTT-HHHHHHHHHHH-HHSTCSEEEEEHHHHHCEESS
T ss_pred             CCCCeEEEEEecCccCCCCCccHHHHHHHHHHcCCceEEccchhhhHHHHHHHHHHHH-hcCCcceeeeecCCCEEecCC
Confidence            567889999998888888766 9999999999999999999998732111 0000000 013589999999999999999


Q ss_pred             ceEEEeeCcccccccccCCCCccCCCCceecCCCCCC--hHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC---C
Q 048438           80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFR--SLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD---K  154 (239)
Q Consensus        80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~---~  154 (239)
                      -+++...++..+......            ..+|-+.  .+.+...+..+|..++...+....++-.++.++|++.   -
T Consensus       231 gai~As~~~~~i~~vs~~------------YpGRas~sp~ld~~itLl~LG~~g~~~ll~~r~~~f~~l~erl~~~aee~  298 (389)
T PF05889_consen  231 GAIMASFDPSGILAVSKE------------YPGRASASPSLDLFITLLSLGCTGYGALLKERKASFPYLKERLKKWAEEV  298 (389)
T ss_dssp             HEEEEESSHHHHHHHHHT------------SHSHBTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CcEEEecCHHHHHHHHHH------------hhhhhhcccchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            888887776666544321            1233322  2555666778899999999998888888888888653   2


Q ss_pred             CeEEEcCCCee-EEEEEEcC
Q 048438          155 RFEVVFPCHFA-VVCFRVSP  173 (239)
Q Consensus       155 g~~~~~~~~~~-iv~f~~~~  173 (239)
                      +-.++..|.-. .+.|.++.
T Consensus       299 ~e~ll~~p~N~is~a~tl~~  318 (389)
T PF05889_consen  299 GERLLETPRNHISMAFTLDT  318 (389)
T ss_dssp             TEEBSSSTT-SSEEEEE-TT
T ss_pred             hhhhcCCCCCCeeEEEECcc
Confidence            44444434322 45555543

Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=98.62  E-value=2.6e-06  Score=74.00  Aligned_cols=188  Identities=14%  Similarity=0.101  Sum_probs=98.9

Q ss_pred             EEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccce
Q 048438            6 LFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCC   81 (239)
Q Consensus         6 ~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g   81 (239)
                      .+|++....+++|.+.|    +++|.++|+++|+++++|.+|.+..-...-+.....++. .|.+  ++.|.++.-...|
T Consensus       167 a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~~~~~~~~~-pdi~--t~sK~l~~G~~ig  243 (375)
T PRK04260        167 AAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGIE-PDIF--TLAKGLANGVPVG  243 (375)
T ss_pred             EEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhHhhCCC-CCEE--EecccccCCcceE
Confidence            46666666777888765    899999999999999999998642111110010022332 6754  6799886433467


Q ss_pred             EEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHh----CCCCeE
Q 048438           82 CLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVS----GDKRFE  157 (239)
Q Consensus        82 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~----~~~g~~  157 (239)
                      .++.+ +++.......      ....++ .+.+.........++.+..+++   .++..+..+++++.+.    +.+.+.
T Consensus       244 ~~~~~-~~~~~~~~~~------~~~~t~-~~~~~~~~aa~a~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~  312 (375)
T PRK04260        244 AMLAK-SSLGGAFGYG------SHGSTF-GGNKLSMAAASATLDIMLTAGF---LEQALENGNYLQEQLQKALQDKETVT  312 (375)
T ss_pred             EEEEc-HHHHhhcCCC------CCCCCC-CcCHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHhhCCCee
Confidence            77764 3333222110      000011 1112222333344544433333   3333344455555443    332222


Q ss_pred             EEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCCc
Q 048438          158 VVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTEE  237 (239)
Q Consensus       158 ~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~  237 (239)
                      -+ +....++.+.+...                         ..++.+++.++|..+.+    .+...+|++++...|++
T Consensus       313 ~~-~~~g~~~~~~~~~~-------------------------~~~~~~~l~~~Gi~v~~----~~~~~lR~~~~~~~t~~  362 (375)
T PRK04260        313 TV-RGLGYMIGIETTAD-------------------------LSQLVEAARDKGLIVLT----AGTNVIRLLPPLTLTKE  362 (375)
T ss_pred             EE-eccceEEEEEecCc-------------------------HHHHHHHHHhCCCEEec----CCCCEEEEcCCCccCHH
Confidence            12 11344555555221                         12667778888876543    24578999987777654

>PRK09276 LL-diaminopimelate aminotransferase; Provisional

Probab=98.62  E-value=2.3e-06  Score=74.58  Aligned_cols=191  Identities=15%  Similarity=0.046  Sum_probs=103.9

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccc--cCCCCCcceEEEcCcccCCCccc
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--IDGVEGADSFSLNAHKWFFATLD   79 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~~~~~~~Ds~~~~~hK~l~~P~g   79 (239)
                      +-+|+.+..+|.||.+.|   +++|+++|++||+++++|.+|+.....-......  +........+..++.|.++ ..|
T Consensus       167 ~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g-~~G  245 (385)
T PRK09276        167 AKLMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYN-MTG  245 (385)
T ss_pred             ceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCcCCEEEEecchhhcC-Ccc
Confidence            456667777899999888   5888889999999999999987543211000000  1111123466789999875 445


Q ss_pred             --ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 048438           80 --CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNY--GMENLRHFLRSHVNMARLFERLVSGDKR  155 (239)
Q Consensus        80 --~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--g~~g~~~~~~~~~~la~~l~~~l~~~~g  155 (239)
                        +|+++. +++.+....... ...         ......+....+...+  ...-+++..++..+..+++.+.|++. +
T Consensus       246 lRiG~~i~-~~~l~~~~~~~~-~~~---------~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~  313 (385)
T PRK09276        246 WRIGFAVG-NADLIAGLGKVK-SNV---------DSGVFQAIQEAGIAALNGPQEVVEELRKIYQERRDILVEGLRKL-G  313 (385)
T ss_pred             hhheeeeC-CHHHHHHHHHHH-hhc---------cCCCCHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhC-C
Confidence              677764 333333221100 000         0000111111122222  22334555556667788899999886 7


Q ss_pred             eEEEcCCCeeE-EEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHh-cCcEEEEEEEEC--CEeEEEEEec
Q 048438          156 FEVVFPCHFAV-VCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINA-SGKAYMTNVVLG--GIYAIRFATG  231 (239)
Q Consensus       156 ~~~~~~~~~~i-v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~~--g~~~lR~~~~  231 (239)
                      +++.. +..+. +.+++++. .               +       ...+.+.|.+ .|..........  +..++|+++.
T Consensus       314 ~~~~~-~~~~~~~~v~~~~~-~---------------~-------~~~l~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~  369 (385)
T PRK09276        314 LEVEP-PKATFYVWAPVPKG-Y---------------T-------SAEFATLLLDKAGVVVTPGNGFGEYGEGYFRIALT  369 (385)
T ss_pred             CcccC-CCcceEEEEECCCC-C---------------C-------HHHHHHHHHHhCCEEECCchhhCCCCCCeEEEEeC
Confidence            77654 44443 55555432 1               0       1245566654 455544433332  3468999986


Q ss_pred             C
Q 048438          232 A  232 (239)
Q Consensus       232 ~  232 (239)
                      .
T Consensus       370 ~  370 (385)
T PRK09276        370 V  370 (385)
T ss_pred             C
Confidence            4

>PRK07682 hypothetical protein; Validated

Probab=98.61  E-value=1e-06  Score=76.60  Aligned_cols=192  Identities=14%  Similarity=0.091  Sum_probs=106.8

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCccccc--ccCCCCCcceEEEcCcccCCCc-c
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRH--FIDGVEGADSFSLNAHKWFFAT-L   78 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~--~~~~~~~~Ds~~~~~hK~l~~P-~   78 (239)
                      +-+|+++.-+|.||.+.+   +++|+++|++|++++++|.+|+.....-+ ...  .+.+...-.++..+++|.++.| .
T Consensus       155 ~~~v~~~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~~~i~~~S~SK~~~~~Gl  233 (378)
T PRK07682        155 TKAILLCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEA-YTSFASIKGMRERTILISGFSKGFAMTGW  233 (378)
T ss_pred             cEEEEEECCCCCcCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCC-CCChhhcccccCCEEEEecCcccccChhh
Confidence            445556677899999865   88899999999999999999875433111 100  0112112457788999998654 2


Q ss_pred             cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHhCCCCe
Q 048438           79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNY--GMENLRHFLRSHVNMARLFERLVSGDKRF  156 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--g~~g~~~~~~~~~~la~~l~~~l~~~~g~  156 (239)
                      -+|+++.. ++.+......       ..+..   .....+...++...+  +...+++..++..+..+++.+.|++. |+
T Consensus       234 R~G~~~~~-~~~i~~l~~~-------~~~~~---~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~  301 (378)
T PRK07682        234 RLGFIAAP-VYFSEAMLKI-------HQYSM---MCAPTMAQFAALEALRAGNDDVIRMRDSYRKRRNFFVTSFNEI-GL  301 (378)
T ss_pred             hhhhhhcC-HHHHHHHHHH-------HHhhc---cCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHC-CC
Confidence            27777763 3333322110       00000   001112222222222  33345566666778888899999886 77


Q ss_pred             EEEcCCCeeEEEE-EEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHH-hcCcEEEEEEEE--CCEeEEEEEecC
Q 048438          157 EVVFPCHFAVVCF-RVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESIN-ASGKAYMTNVVL--GGIYAIRFATGA  232 (239)
Q Consensus       157 ~~~~~~~~~iv~f-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~--~g~~~lR~~~~~  232 (239)
                      ++. +++.+...+ .+++...               +       ...+.+.+. +.|..+......  .+..++|+++..
T Consensus       302 ~~~-~p~g~~~~~~~~~~~~~---------------~-------~~~~~~~ll~~~gv~v~pg~~f~~~~~~~iRis~~~  358 (378)
T PRK07682        302 TCH-VPGGAFYAFPSISSTGL---------------S-------SEEFAEQLLLEEKVAVVPGSVFGESGEGFIRCSYAT  358 (378)
T ss_pred             ccC-CCCeeEEEEEeccCCCC---------------C-------HHHHHHHHHHhCCEEEcCchhhCcCCCCeEEEEeCC
Confidence            754 445554333 3322111               0       124555654 455554443322  236799999875

>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional

Probab=98.61  E-value=1.3e-06  Score=75.87  Aligned_cols=141  Identities=11%  Similarity=0.107  Sum_probs=76.5

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCc--ccCCCcccceE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAH--KWFFATLDCCC   82 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~h--K~l~~P~g~g~   82 (239)
                      +-+|+.+   +.+|...|+++|.++|+++|+++++|+||+.+.. .+. +. ...  ..|.-++|+|  |.+.+.. .|+
T Consensus       120 tk~i~~~---~~~G~~~~~~~i~~la~~~~i~vIeD~a~a~g~~-~~~-~~-~g~--~~~~~~~Sf~~~K~l~~g~-gG~  190 (375)
T PRK11706        120 TRAIVPV---HYAGVACEMDTIMALAKKHNLFVVEDAAQGVMST-YKG-RA-LGT--IGHIGCFSFHETKNYTAGE-GGA  190 (375)
T ss_pred             CeEEEEe---CCCCCccCHHHHHHHHHHcCCEEEEECccccccc-cCC-ee-eec--CcCEEEEeCCCCccccccC-CeE
Confidence            3445444   3589999999999999999999999999998763 111 10 111  2466667776  9975433 344


Q ss_pred             EEeeCcccccccc--cCC----CCccC-C-CCce-ecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC
Q 048438           83 LWATNPEYLKNKA--TES----KPVVD-Y-KDWQ-ITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD  153 (239)
Q Consensus        83 l~~~~~~~l~~~~--~~~----~~~~~-~-~~~~-~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~  153 (239)
                      +++.+++......  ...    ..... . ..+. ...+..+..-.+.+++-....+.+++..++..+++++..+.|.++
T Consensus       191 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~ql~~l~~~~~~R~~~~~~~~~~L~~~  270 (375)
T PRK11706        191 LLINDPALIERAEIIREKGTNRSQFFRGQVDKYTWVDIGSSYLPSELQAAYLWAQLEAADRINQRRLALWQRYYDALAPL  270 (375)
T ss_pred             EEECCHHHHHHHHHHHHcCCCcchhhccCCCcceeeecccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            5554443322110  000    00000 0 0000 111222221112222211122456677777788999999999877


Q ss_pred             C
Q 048438          154 K  154 (239)
Q Consensus       154 ~  154 (239)
                      +
T Consensus       271 ~  271 (375)
T PRK11706        271 A  271 (375)
T ss_pred             C
Confidence            5

>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed

Probab=98.60  E-value=3.7e-06  Score=72.70  Aligned_cols=191  Identities=11%  Similarity=0.037  Sum_probs=101.2

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccc---cCC-CCCcceEEEcCcccCCCc
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF---IDG-VEGADSFSLNAHKWFFAT   77 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~---~~~-~~~~Ds~~~~~hK~l~~P   77 (239)
                      +-+|+.+..+|.||.+.+   +++|.++|+++|+++++|.+|+.....-+.....   ..+ ...-.+++.++.|.++.|
T Consensus       149 ~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~  228 (364)
T PRK07865        149 PALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGGDHTGLLAVHSLSKQSNLA  228 (364)
T ss_pred             ceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhhhccCCCCCccccccccCCccceEEEEeechhccCCC
Confidence            456666777899998766   5788888999999999999987532211100000   000 001237788999997554


Q ss_pred             c-cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHhCCCC
Q 048438           78 L-DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGM-ENLRHFLRSHVNMARLFERLVSGDKR  155 (239)
Q Consensus        78 ~-g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-~g~~~~~~~~~~la~~l~~~l~~~~g  155 (239)
                      . -+|+++. +++.+.......    ....+.      ...+....+...+.. +.+++..+...+..+++.+.|++. |
T Consensus       229 GlRiG~i~~-~~~~~~~~~~~~----~~~~~~------~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g  296 (364)
T PRK07865        229 GYRAGFVAG-DPALVAELLEVR----KHAGMM------VPAPVQAAMVAALGDDAHVREQRERYARRRAVLRPALEAA-G  296 (364)
T ss_pred             ceeeEEEec-CHHHHHHHHHHH----HhcCCC------cCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHc-C
Confidence            2 2555543 344333221100    000000      111222222222322 234455555667778888888875 7


Q ss_pred             eEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEEC--CEeEEEEEecC
Q 048438          156 FEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLG--GIYAIRFATGA  232 (239)
Q Consensus       156 ~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~--g~~~lR~~~~~  232 (239)
                      +.+. +++.++. +.+....                +       ...+.+.|.++|..+.......  +..++|+++..
T Consensus       297 ~~~~-~~~~~~~-~~~~~~~----------------~-------~~~~~~~l~~~gv~v~pg~~f~~~~~~~iRi~~~~  350 (364)
T PRK07865        297 FRVD-HSEAGLY-LWATRGE----------------D-------CWDTVAWLAERGILVAPGDFYGPAGAQHVRVALTA  350 (364)
T ss_pred             Cccc-CCCccEE-EEEeCCC----------------C-------HHHHHHHHHHCCEEEeCccccCcCCCCEEEEEecC
Confidence            7654 3444532 2222111                0       0134556666777655544332  35789999875

>PRK09082 methionine aminotransferase; Validated

Probab=98.59  E-value=1e-06  Score=76.87  Aligned_cols=155  Identities=11%  Similarity=0.052  Sum_probs=86.6

Q ss_pred             cEEEEEecCCCCcccc---cChhHHHHHHHHhCCEEEEecccccccccCcccccc--cCCCCCcceEEEcCcccCCCcc-
Q 048438            5 PLFLCATIGTTAITAV---DPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--IDGVEGADSFSLNAHKWFFATL-   78 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i---~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~~~~~~~Ds~~~~~hK~l~~P~-   78 (239)
                      +-+|+++.-+|.||.+   .++++|.++|++||+++++|.+|+-....-......  ..+...-..+..++.|.++.|. 
T Consensus       164 ~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~  243 (386)
T PRK09082        164 TRLIILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVTGW  243 (386)
T ss_pred             ceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeechhhccchhh
Confidence            4566677778999986   678999999999999999999986443211111110  1122224577889999976552 


Q ss_pred             cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHhCCCCe
Q 048438           79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNY--GMENLRHFLRSHVNMARLFERLVSGDKRF  156 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--g~~g~~~~~~~~~~la~~l~~~l~~~~g~  156 (239)
                      -+|+++. .++.+......    .....+.      ........+...+  ..+-+++..+...+..+++.+.|++. ++
T Consensus       244 RiG~iv~-~~~l~~~~~~~----~~~~~~~------~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~  311 (386)
T PRK09082        244 KVGYCVA-PAALSAEFRKV----HQYNTFT------VNTPAQLALADYLRAEPEHYLELPAFYQAKRDRFRAALANS-RF  311 (386)
T ss_pred             hhhhhhC-CHHHHHHHHHH----HhhhcCC------CChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhC-CC
Confidence            2566664 33333222110    0000011      1111111111222  23445555566677788888999874 77


Q ss_pred             EEEcCCCeeE-EEEEEc
Q 048438          157 EVVFPCHFAV-VCFRVS  172 (239)
Q Consensus       157 ~~~~~~~~~i-v~f~~~  172 (239)
                      ++. +++.+. +.++++
T Consensus       312 ~~~-~~~g~~~~~~~~~  327 (386)
T PRK09082        312 KLL-PCEGTYFQLVDYS  327 (386)
T ss_pred             ccc-CCCeeEEEEEecc
Confidence            754 455554 445664

>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase

Probab=98.59  E-value=5.2e-06  Score=73.13  Aligned_cols=193  Identities=11%  Similarity=0.040  Sum_probs=102.1

Q ss_pred             cEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCC-ccc
Q 048438            5 PLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFA-TLD   79 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~-P~g   79 (239)
                      +.+|++--...+.|.+-|    +++|.++|++||+++++|..|.+.--....+.....++. .|.++++  |++++ -..
T Consensus       195 ~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~~v~-PDi~~~~--K~lg~~G~p  271 (412)
T TIGR02407       195 PAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFFSFEPAGIE-PDIVCLS--KSISGYGLP  271 (412)
T ss_pred             eEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhHHhcccCCC-CCEEEec--hhccCCccc
Confidence            456665555556676432    899999999999999999998743111110000023443 8988765  99864 444


Q ss_pred             ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHHHhC----CC
Q 048438           80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRN-YGMENLRHFLRSHVNMARLFERLVSG----DK  154 (239)
Q Consensus        80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~g~~~~~~~~~~la~~l~~~l~~----~~  154 (239)
                      +|++++++ +. ......      ....++ .+.+.......++++. +..+.+.   ++..++.+++.++|++    .+
T Consensus       272 igav~~~~-~~-~~~~~~------~~~~T~-~gnpl~~aaa~a~l~~~i~~~~l~---~~~~~~g~~l~~~l~~l~~~~~  339 (412)
T TIGR02407       272 LALTLIKP-EL-DVWKPG------EHNGTF-RGNNLAFVTATAALEYYWSDDAFE---KAVQRKSEIIQERLDRIVAEYP  339 (412)
T ss_pred             eeEEEEch-hh-hccCCC------ccCCCC-CccHHHHHHHHHHHHHHhcccHHH---HHHHHHHHHHHHHHHHHHhhCC
Confidence            78888754 22 211100      000111 1111111222344553 4444343   3444666677666653    33


Q ss_pred             CeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCC
Q 048438          155 RFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATL  234 (239)
Q Consensus       155 g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~  234 (239)
                      ++..-......++.+.+++                       ......+.+.+.++|.++.. .. .+...||+++.-..
T Consensus       340 ~~~~~vrg~Gl~~~l~l~~-----------------------~~~~~~~~~~~~~~Gv~v~~-~~-~~~~~lr~~p~l~~  394 (412)
T TIGR02407       340 ELIKQVRGRGLMQGIECGD-----------------------GDLAGKIAKAAFENGLIIET-SG-PNDEVIKLLPPLTI  394 (412)
T ss_pred             CceEeeecceeEEEEEecC-----------------------hHHHHHHHHHHHHCCCEEec-cC-CCCCEEEEECCCCC
Confidence            2221111223455666643                       12334677788888866532 21 12467999987776


Q ss_pred             CCc
Q 048438          235 TEE  237 (239)
Q Consensus       235 t~~  237 (239)
                      |++
T Consensus       395 t~~  397 (412)
T TIGR02407       395 DEE  397 (412)
T ss_pred             CHH
Confidence            654

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=98.58  E-value=5.1e-06  Score=72.53  Aligned_cols=79  Identities=18%  Similarity=0.048  Sum_probs=49.1

Q ss_pred             cEEEEEecCCCCcccc----cChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438            5 PLFLCATIGTTAITAV----DPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC   80 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i----~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~   80 (239)
                      +.+|++....+.+|.+    +.+++|.++|++||+++++|.+|.+.......+.....++. .|.+  ++.|.+++-...
T Consensus       176 ~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~-pdi~--t~sK~l~~G~~i  252 (389)
T PRK01278        176 TAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFAHEWAGVT-PDIM--AVAKGIGGGFPL  252 (389)
T ss_pred             eEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCcceeecccCCC-CCEE--EEehhccCCcce
Confidence            4566666556666733    47999999999999999999999743211110000012333 6755  457998643346


Q ss_pred             eEEEee
Q 048438           81 CCLWAT   86 (239)
Q Consensus        81 g~l~~~   86 (239)
                      |.++.+
T Consensus       253 g~~~~~  258 (389)
T PRK01278        253 GACLAT  258 (389)
T ss_pred             EEEEEc
Confidence            776664

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=98.58  E-value=1.9e-06  Score=76.71  Aligned_cols=198  Identities=13%  Similarity=0.018  Sum_probs=112.2

Q ss_pred             ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-c
Q 048438            4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-L   78 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~   78 (239)
                      ...+|++--...+.|.+.|    ++++.++|++||+.+++|.+|.+.--...-+.....++. .|.+++  -|.+++- .
T Consensus       231 ~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~-PDivt~--gK~lggG~~  307 (459)
T PRK11522        231 DVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFACEHENVQ-PDILCL--AKALGGGVM  307 (459)
T ss_pred             cEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccchhhhhhccCCC-CCEEEe--chhhhCCCc
Confidence            4567777777777899888    999999999999999999999642111111111123443 887754  7998753 2


Q ss_pred             cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC-CeE
Q 048438           79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK-RFE  157 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~-g~~  157 (239)
                      .+|.++.++ +........ .  .  ...+...+.+.......++++.+..+.   ..++..++.++|.+.|+++. .+.
T Consensus       308 Pigav~~~~-~i~~~~~~~-~--~--~~~~T~~gnp~~~Aaala~L~~i~~~~---l~~~~~~~g~~l~~~L~~l~~~~~  378 (459)
T PRK11522        308 PIGATIATE-EVFSVLFDN-P--F--LHTTTFGGNPLACAAALATINVLLEQN---LPAQAEQKGDYLLDGFRQLAREYP  378 (459)
T ss_pred             cceeEEEcH-HHHHHhccC-C--c--ccCCCCCCCHHHHHHHHHHHHHHhcch---HHHHHHHHHHHHHHHHHHHHHhCC
Confidence            356677653 333221100 0  0  000111122233333445566554443   44566688889988887641 121


Q ss_pred             -EEcC--CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCC
Q 048438          158 -VVFP--CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATL  234 (239)
Q Consensus       158 -~~~~--~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~  234 (239)
                       ++..  ....++.+.+...                       +....+.+.|.++|.+. ... ..+..++|+++....
T Consensus       379 ~~i~~VrG~Gl~~giel~~~-----------------------~~~~~i~~~l~~~Gvl~-~~~-~~~~~~lr~~Ppl~~  433 (459)
T PRK11522        379 DLVQEARGKGMLMAIEFVDN-----------------------EIGYNFASEMFRQRVLV-AGT-LNNAKTIRIEPPLTL  433 (459)
T ss_pred             CceeeEEeceeEEEEEecCc-----------------------hHHHHHHHHHHHCCeEE-Eec-CCCCCEEEEECCccC
Confidence             2222  1234666666431                       22346777888877554 332 224578999987766


Q ss_pred             CCcC
Q 048438          235 TEER  238 (239)
Q Consensus       235 t~~~  238 (239)
                      |++|
T Consensus       434 t~~~  437 (459)
T PRK11522        434 TIEQ  437 (459)
T ss_pred             CHHH
Confidence            6543

>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional

Probab=98.57  E-value=5e-06  Score=73.65  Aligned_cols=206  Identities=14%  Similarity=0.083  Sum_probs=109.0

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccc--cCCCCCcceEEEcCcccCCCc-c
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--IDGVEGADSFSLNAHKWFFAT-L   78 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~~~~~~~Ds~~~~~hK~l~~P-~   78 (239)
                      +.+++++..+|.||.+.|   +++|+++|+++|+++++|.+++............  +.... -=.+..++.|.+..| .
T Consensus       191 ~~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~~~-~vi~~~S~SK~~~~pG~  269 (430)
T PLN00145        191 TVAMVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGEVA-PVLTLGSISKRWVVPGW  269 (430)
T ss_pred             ceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhcccC-cEEEEeccccccCCCCe
Confidence            456777778999999998   7888999999999999999986533211111110  11111 124566999996555 3


Q ss_pred             cceEEEeeCcc-cccccccCCCCccCCCCceecCCC-CCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCe
Q 048438           79 DCCCLWATNPE-YLKNKATESKPVVDYKDWQITLSR-SFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRF  156 (239)
Q Consensus        79 g~g~l~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~  156 (239)
                      -+|.++...+. .+....... ......  ....+. .+....+..+++.-..+-+++..+...+..+.+.+.|++++++
T Consensus       270 RlG~iv~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~  346 (430)
T PLN00145        270 RLGWIATCDPNGILKETKVVD-SIRNYL--NISTDPATFVQGAIPQIIANTKEEFFTKTLGLLKETADICYEKIKEIKCI  346 (430)
T ss_pred             eEEEEEEecchhhhhhhHHHH-HHHHHh--cccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            36777664332 111100000 000000  000000 0111122222332113445677777778888999999988888


Q ss_pred             EEEcCC-CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHh-cCcEEEEEEEECCEeEEEEEecC
Q 048438          157 EVVFPC-HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINA-SGKAYMTNVVLGGIYAIRFATGA  232 (239)
Q Consensus       157 ~~~~~~-~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~~g~~~lR~~~~~  232 (239)
                      .....| ..+-+.++++....              ...    .....+..+|.+ +|.+.++........++|+++..
T Consensus       347 ~~~~~P~ga~y~~v~l~~~~~--------------~~~----~~~~~~~~~ll~~~gV~v~pG~~fg~~~~lRis~~~  406 (430)
T PLN00145        347 TCPHKPEGSMFVMVKLDLSCL--------------SGI----KDDMDFCCKLAKEESVVVLPGSALGMKNWLRITFAI  406 (430)
T ss_pred             CCCcCCCeeeEEEeccChhhc--------------CCC----CCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEeCC
Confidence            754434 34444455432100              000    001244544544 45555555555556899999874

>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1

Probab=98.57  E-value=2e-06  Score=75.09  Aligned_cols=143  Identities=15%  Similarity=0.145  Sum_probs=79.2

Q ss_pred             EEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc-----ce
Q 048438            7 FLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD-----CC   81 (239)
Q Consensus         7 ~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g-----~g   81 (239)
                      +-|+..-.|..|.+.++++|++++|++|..+++ +|--.....+....    .+ ++|.+ ++.||-|+.|.|     +|
T Consensus       199 a~v~vq~Pn~~G~~ed~~~i~~~~h~~gal~~~-~ad~~aL~~l~~Pg----e~-GADI~-vg~~Q~fg~p~~~GGP~~G  271 (429)
T PF02347_consen  199 AAVMVQNPNTFGVFEDIKEIADIAHAAGALVIV-GADPNALGGLKSPG----EY-GADIV-VGEHQTFGIPMGFGGPGAG  271 (429)
T ss_dssp             EEEEEESS-TTSB--THHHHHHHHHHTT-EEEE-CGGCCGCCTC--GG----GG-T-SEE-EECCTTTT---CCC-S--E
T ss_pred             EEEEeecCCCCceEeeHHHHHHHHHHcCCEEEE-ecCHHHHhCcCChh----hc-CccEE-eeCCCCCcccCCCCCCCee
Confidence            344455566799999999999999999999988 76332211111111    11 49999 566999888854     67


Q ss_pred             EEEeeCcccccccccC-CCCccC---CCCceecCC------CC--C-------C---hHHHHHHHHHhCHHHHHHHHHHH
Q 048438           82 CLWATNPEYLKNKATE-SKPVVD---YKDWQITLS------RS--F-------R---SLKLWFVIRNYGMENLRHFLRSH  139 (239)
Q Consensus        82 ~l~~~~~~~l~~~~~~-~~~~~~---~~~~~~~~~------~~--~-------~---~~~~~~~l~~~g~~g~~~~~~~~  139 (239)
                      ++-+++ .+.+..... -+...|   ...+.+...      ||  .       .   ++..+..+..+|.+|+++..++.
T Consensus       272 ~~a~~~-~l~r~lPGRiVG~t~D~~G~~~~~ltLqtREQHIrReKAtSNIctnqaL~A~~a~~Yl~~~G~~GL~~iA~~~  350 (429)
T PF02347_consen  272 FFAVRE-DLVRQLPGRIVGQTKDADGKRAFVLTLQTREQHIRREKATSNICTNQALLALAAAIYLAYLGPEGLREIAERI  350 (429)
T ss_dssp             EEEE-G-GGGGGS-S-EEEEEEBCCCSCCEEEE-GGGTCHHHGCCSTT---SS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEhh-hhhhhCCCceecccccccccceeeeccccccccccccchhhhhhhhHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            777765 343332210 000000   011221111      11  1       1   12333456788999999999999


Q ss_pred             HHHHHHHHHHHhCCCCeE
Q 048438          140 VNMARLFERLVSGDKRFE  157 (239)
Q Consensus       140 ~~la~~l~~~l~~~~g~~  157 (239)
                      ...+.|+.++|+++.++.
T Consensus       351 ~~~A~yl~~~L~~~~~~~  368 (429)
T PF02347_consen  351 HLNAHYLAERLKKIYGLP  368 (429)
T ss_dssp             HHHHHHHHHHHCCTTBEC
T ss_pred             HHHHHHHHHHHHHhcCcc
Confidence            999999999999873443

4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.

>PLN02760 4-aminobutyrate:pyruvate transaminase

Probab=98.57  E-value=2.9e-06  Score=76.43  Aligned_cols=208  Identities=11%  Similarity=0.005  Sum_probs=108.2

Q ss_pred             ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcc-
Q 048438            4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATL-   78 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~-   78 (239)
                      .+.+|++--...+.|.+.|    +++|.++|++||+++++|.+|.+.--...-+.....++. .|.+++  -|.+++-+ 
T Consensus       260 ~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~~~a~e~~gv~-PDivtl--gK~lggG~~  336 (504)
T PLN02760        260 TIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMFGCDKYNIK-PDLVSL--AKALSSAYM  336 (504)
T ss_pred             ceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccchhhHHHhcCCC-CcEEEe--cccccCCcc
Confidence            3556666666667788888    999999999999999999999443121221111123554 897665  79886521 


Q ss_pred             cceEEEeeCcccccccccCCC--CccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCe
Q 048438           79 DCCCLWATNPEYLKNKATESK--PVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRF  156 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~  156 (239)
                      ..|.+++++ +..........  ..+. ...++ .+.+.......++|+.+..+   +..++..++.++|++.|+++...
T Consensus       337 PigAv~~~~-~i~d~~~~~~~~~~~~~-h~~T~-~gnPl~~Aaala~Le~i~~~---~l~~~~~~~g~~l~~~L~~l~~~  410 (504)
T PLN02760        337 PIGAVLVSP-EISDVIHSQSNKLGSFA-HGFTY-SGHPVSCAVALEALKIYKER---NIPEHVNKIAPRFQDGIKAFSGS  410 (504)
T ss_pred             ccceEeecH-HHHhhhhcccccccCcc-cCCCC-CCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHhcC
Confidence            245566543 33222111000  0000 11111 12222223333445544333   45666778889999988765222


Q ss_pred             EEEcCC--CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCC
Q 048438          157 EVVFPC--HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATL  234 (239)
Q Consensus       157 ~~~~~~--~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~  234 (239)
                      .++.+.  .--++.+.+......         .   ........+...+.+.+.++|.+...    .| ..+|+++.--.
T Consensus       411 ~~v~~vrG~Gl~~gie~~~~~~~---------~---~~~~~~~~~~~~i~~~~~~~Gvl~~~----~g-~~lrl~Ppl~i  473 (504)
T PLN02760        411 PIIGEIRGTGLILGTEFVDNKSP---------N---DPFPAEWGVGAYFGAECKKRGMLVRV----AG-DNIMMSPPLII  473 (504)
T ss_pred             CCeeeEEeCceEEEEEEecCCcc---------c---ccccchhHHHHHHHHHHHhCCcEEEe----cC-CEEEEECCCCC
Confidence            222211  123555555432100         0   00000123455777888888876543    23 46788865555


Q ss_pred             CCc
Q 048438          235 TEE  237 (239)
Q Consensus       235 t~~  237 (239)
                      |++
T Consensus       474 t~e  476 (504)
T PLN02760        474 TPE  476 (504)
T ss_pred             CHH
Confidence            544

>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=98.56  E-value=1e-06  Score=75.77  Aligned_cols=143  Identities=15%  Similarity=0.134  Sum_probs=92.2

Q ss_pred             CCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEEeeCccccccc
Q 048438           15 TAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWATNPEYLKNK   94 (239)
Q Consensus        15 t~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~l~~~   94 (239)
                      ...|...++++|.++|++||++++-|+||+.|..--.+.   +-.+..+-+++|-++|.+.+- ..|.+..++++.....
T Consensus       130 hl~G~~~dm~~i~~la~~~~l~vIEDaAqa~Ga~y~gk~---vGt~Gd~~~fSF~~~K~ittg-EGGav~tnd~ela~k~  205 (374)
T COG0399         130 HLAGQPCDMDAIMALAKRHGLPVIEDAAQAHGATYKGKK---VGSFGDIGAFSFHATKNLTTG-EGGAVVTNDEELAEKA  205 (374)
T ss_pred             hhccCCCCHHHHHHHHHHcCCeEEEEcchhccCeecCcc---cccccceEEEEecCCCCcccc-CceEEEeCCHHHHHHH
Confidence            357888899999999999999999999999886533221   222334778899999998665 4566666665433222


Q ss_pred             cc--CCCCcc--CCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcC
Q 048438           95 AT--ESKPVV--DYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFP  161 (239)
Q Consensus        95 ~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~  161 (239)
                      ..  ..+...  ....+....|-+++--.+.+++.....+.++++.++..+++++..+.|++.+++.+..+
T Consensus       206 ~~lr~hG~~~~~~~~y~~~~~G~N~rm~~iqAAigl~QL~~l~~~~~~R~~~a~~Y~~~l~~~~~~~~p~~  276 (374)
T COG0399         206 RSLRNHGLSRDAVFKYLHEELGYNYRLTEIQAAIGLAQLERLDEINERRREIAQIYAEALKGLPGITLPPE  276 (374)
T ss_pred             HHHHHhCcCCCccccceeeecccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Confidence            10  011111  11112223344444444444444445577788888889999999999999877665443

>PRK13360 omega amino acid--pyruvate transaminase; Provisional

Probab=98.56  E-value=3e-06  Score=75.23  Aligned_cols=203  Identities=12%  Similarity=0.139  Sum_probs=104.2

Q ss_pred             ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-c
Q 048438            4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-L   78 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~   78 (239)
                      .+.+|++--...+.|.+-|    +++|.++|++||+++++|.+|.+.--...-+.....++. .|.+++  -|.+++- .
T Consensus       215 ~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~-PDivt~--gK~l~gG~~  291 (442)
T PRK13360        215 TIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPFAAQYFGVT-PDLLTC--AKGLTNGAI  291 (442)
T ss_pred             cEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCC-Cceeee--eeccccCcc
Confidence            3556666666677899988    999999999999999999999432111111110123443 887754  7988642 2


Q ss_pred             cceEEEeeCcccccccccCCCCccC-CCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438           79 DCCCLWATNPEYLKNKATESKPVVD-YKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE  157 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~  157 (239)
                      .+|.+..++ +.............. ....++. +.+.......++++.+..++   ..++..++.+++.+.|+++..+.
T Consensus       292 P~gav~~~~-~i~~~~~~~~~~~~~~~~~~T~~-g~pl~~aaa~a~L~~l~~~~---l~~~~~~~g~~l~~~l~~l~~~~  366 (442)
T PRK13360        292 PMGAVFVSS-EIHDAFMQGPEAGIEFFHGYTYS-GHPLACAAALATLDLYEREG---LLTRAARLAPYWEDALHSLRDAP  366 (442)
T ss_pred             ceEEEEEcH-HHHHHhhcCCccccccccCCCCC-CCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHhhcCC
Confidence            245555543 332211110000000 0111211 22222333334555554333   44566688888888887653222


Q ss_pred             EEcCCC-ee-EEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCC
Q 048438          158 VVFPCH-FA-VVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLT  235 (239)
Q Consensus       158 ~~~~~~-~~-iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t  235 (239)
                      .+.+.. .+ ++.+.+.+...              .+    .+....+.++|.++|.+...    .+ ..+|+++....|
T Consensus       367 ~v~~vrG~Gl~~~~~l~~~~~--------------~~----~~~~~~~~~~l~~~Gvl~~~----~~-~~lr~~Ppl~~t  423 (442)
T PRK13360        367 HVIDIRNLGLVGAVELAPRDG--------------KP----GKRAYEVFLKCFEKGLMIRY----TG-DILALSPPLIIE  423 (442)
T ss_pred             CeeeeeccceEEEEEEecCCC--------------Cc----chhHHHHHHHHHHCCcEEEe----cC-CEEEEeCCCccC
Confidence            222211 11 22333322110              01    11223566677777765432    22 579999777666


Q ss_pred             Cc
Q 048438          236 EE  237 (239)
Q Consensus       236 ~~  237 (239)
                      ++
T Consensus       424 ~~  425 (442)
T PRK13360        424 EA  425 (442)
T ss_pred             HH
Confidence            54

>PRK06425 histidinol-phosphate aminotransferase; Validated

Probab=98.56  E-value=3.4e-06  Score=72.07  Aligned_cols=187  Identities=11%  Similarity=0.048  Sum_probs=105.9

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccC-cccccccCCCCCcceEEEcCcccCCCc-cc
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIF-PEFRHFIDGVEGADSFSLNAHKWFFAT-LD   79 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~-~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g   79 (239)
                      +-+|+++.-+|.||.+.+   +++|.++|+++++++++|.+++-..... +.........+ -=.++.++.|.++.| .=
T Consensus       123 ~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~~~~~~~~~~~~-~vi~~~SfSK~~~l~GlR  201 (332)
T PRK06425        123 FDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPNRAEEDVLLNRSYG-NVIIGRSLTKILGIPSLR  201 (332)
T ss_pred             CCEEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhccccccchhHHHHhccCC-CEEEEeecHHhcCCchhh
Confidence            445666678899999877   5667777899999999999986432211 00000111111 124567999997744 22


Q ss_pred             ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHH-HHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 048438           80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMEN-LRHFLRSHVNMARLFERLVSGDKRFEV  158 (239)
Q Consensus        80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g-~~~~~~~~~~la~~l~~~l~~~~g~~~  158 (239)
                      +|.++. .++.+.......      ..+..      .... ..++.....+. +++..+...+..+++.+.|++. |+++
T Consensus       202 iGy~v~-~~~li~~l~~~~------~~~~~------~~~~-~~~l~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~  266 (332)
T PRK06425        202 IGYIAT-DDYNMKISRKIT------EPWSV------CDPA-IDFIRSIDLDYVAKHSLDIMENERSYLINNLEAM-GFRA  266 (332)
T ss_pred             heeeec-CHHHHHHHHHcC------CCCcc------CHHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHC-CCEE
Confidence            566665 333333221100      01111      1111 11222222222 2345566667778899999886 7887


Q ss_pred             EcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEEC--CEeEEEEEecCC
Q 048438          159 VFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLG--GIYAIRFATGAT  233 (239)
Q Consensus       159 ~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~--g~~~lR~~~~~~  233 (239)
                      ..++..+-+.+++++                          ...+.+.|.++|..........  |..++|+++..+
T Consensus       267 ~~~~~g~f~~~~~~~--------------------------~~~~~~~l~~~gi~v~~~~~f~~~~~~~iRis~~~~  317 (332)
T PRK06425        267 AGDPSANFITFMIPD--------------------------AHDFYSYLLKNGILVRLLDDYECLGEQYIRIAIRRR  317 (332)
T ss_pred             CCCCCceEEEEEcCC--------------------------HHHHHHHHHHCCeEEEECCCCCCCCCCEEEEEeCCH
Confidence            656677777776641                          1256667777776655544332  346999998764

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=98.56  E-value=7e-06  Score=71.70  Aligned_cols=188  Identities=11%  Similarity=0.024  Sum_probs=95.9

Q ss_pred             cEEEEEecCCCCccc-c---cChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438            5 PLFLCATIGTTAITA-V---DPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC   80 (239)
Q Consensus         5 p~~vv~t~gtt~~G~-i---~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~   80 (239)
                      +.+|++....+.+|. .   +.+++|.++|++||+++++|.+|++.............++. .|.++  +.|.+++....
T Consensus       183 ~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~~~~~~~~~~~-pdi~t--~sK~~~~G~ri  259 (396)
T PRK02627        183 TAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKLFAYQHYGIE-PDIMT--LAKGLGGGVPI  259 (396)
T ss_pred             eEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCceeeehhcCCC-CCEEE--EcchhhCCccc
Confidence            456666665666773 2   23899999999999999999998743111110000012332 67665  56998754557


Q ss_pred             eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC----CCe
Q 048438           81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD----KRF  156 (239)
Q Consensus        81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~----~g~  156 (239)
                      |.++..+ +........    ....  + .++..........+++.+..+   +..++..++.+++++.|.+.    +.+
T Consensus       260 g~~~~~~-~~~~~~~~~----~~~~--t-~~~~~~~~~aa~~~l~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~  328 (396)
T PRK02627        260 GAVLAKE-KVADVFTPG----DHGS--T-FGGNPLACAAALAVIEIIEEE---GLLENAAEVGEYLRAKLRELLEKYPGI  328 (396)
T ss_pred             EEEEEcH-HHHhccCCC----CCCC--C-CCCCHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence            7777643 333222110    0000  1 011112222233344433222   33444556666666666543    222


Q ss_pred             EEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCC
Q 048438          157 EVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTE  236 (239)
Q Consensus       157 ~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~  236 (239)
                      ..+ .....++.+.+...                         ...+.++|.++|.++..    .+..++|+++....|+
T Consensus       329 ~~~-~~~g~~~~i~~~~~-------------------------~~~~~~~l~~~Gv~v~~----~~~~~lRi~~~~~~~~  378 (396)
T PRK02627        329 KEV-RGLGLMIGIELDRP-------------------------AAEIVKKALEKGLLINV----TGDNVLRLLPPLIISK  378 (396)
T ss_pred             eee-ccCcEEEEEEecCc-------------------------HHHHHHHHHHCCeEEee----cCCCEEEEECCcccCH
Confidence            211 22345566665211                         13667777777655433    2346799987644443

>PLN03026 histidinol-phosphate aminotransferase; Provisional

Probab=98.56  E-value=2.6e-06  Score=74.20  Aligned_cols=190  Identities=13%  Similarity=0.003  Sum_probs=108.9

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-ccceE
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-LDCCC   82 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~g~   82 (239)
                      .+-+|+++..+|.||.+.|.+++.++++.. +++++|.+|.-.... ......+... .-.++..++.|.++.| .-+|+
T Consensus       175 ~~~~v~l~~P~NPTG~~~~~~~l~~l~~~~-~~vi~DeaY~~~~~~-~~~~~~~~~~-~~viv~~SfSK~~glaGlRiGy  251 (380)
T PLN03026        175 KPKLLFLTSPNNPDGSIISDDDLLKILELP-ILVVLDEAYIEFSTQ-ESRMKWVKKY-DNLIVLRTFSKRAGLAGLRVGY  251 (380)
T ss_pred             CCcEEEEeCCCCCCCCCCCHHHHHHHHhcC-CEEEEECcchhhcCC-cchHHHHHhC-CCEEEEecchHhhcCcccccee
Confidence            345677778899999999999999999865 999999998633210 0010111111 1346788999997533 22555


Q ss_pred             EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcC
Q 048438           83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYG-MENLRHFLRSHVNMARLFERLVSGDKRFEVVFP  161 (239)
Q Consensus        83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~  161 (239)
                      ++. .++.+.......      ..+.      ...+....+...+. .+-+++..+...+..+++.+.|++++++++ .+
T Consensus       252 ~~~-~~~~i~~l~~~~------~~~~------~~~~~q~aa~~aL~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-~p  317 (380)
T PLN03026        252 GAF-PLSIIEYLWRAK------QPYN------VSVAAEVAACAALSNPKYLEDVKNALVEERERLFGLLKEVPFLEP-YP  317 (380)
T ss_pred             eec-CHHHHHHHHHhc------CCCC------CCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHCCCCeE-CC
Confidence            553 334443221100      0011      11222222222221 223445555666777888899988755554 46


Q ss_pred             CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCC
Q 048438          162 CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGAT  233 (239)
Q Consensus       162 ~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~  233 (239)
                      +..+.+.+.+++..                +       ...+.+.|.++|..........+..++|+++..+
T Consensus       318 ~~~~f~~~~~~~~~----------------~-------~~~~~~~l~~~gI~v~~~~~~~~~~~lRis~~~~  366 (380)
T PLN03026        318 SDANFILCRVTSGR----------------D-------AKKLKEDLAKMGVMVRHYNSKELKGYIRVSVGKP  366 (380)
T ss_pred             CCCeEEEEECCCCC----------------C-------HHHHHHHHHHCCeEEEECCCCCCCCEEEEecCCH
Confidence            67788878775311                0       1256667776776544332223456899998853

>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic

Probab=98.55  E-value=4.5e-06  Score=73.16  Aligned_cols=201  Identities=10%  Similarity=-0.019  Sum_probs=107.2

Q ss_pred             EEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCC-Ccc-eEEEcCcccCCCc-cc
Q 048438            6 LFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVE-GAD-SFSLNAHKWFFAT-LD   79 (239)
Q Consensus         6 ~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~-~~D-s~~~~~hK~l~~P-~g   79 (239)
                      -+|+++.-+|.||.+.+   +++|+++|+++|+++++|.++......-..... +..+. ... +++.++.|.++.| .-
T Consensus       170 ~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~-~~~~~~~~~vi~~~SfSK~~~~~GlR  248 (401)
T TIGR01264       170 AALIVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEP-LASLSSTVPILSCGGLAKRWLVPGWR  248 (401)
T ss_pred             eEEEEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCccccc-HHHcCCCCcEEEEccCcccCCCccce
Confidence            45566777899999865   888999999999999999998753321111111 11111 112 5678999974444 33


Q ss_pred             ceEEEeeCc-----ccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 048438           80 CCCLWATNP-----EYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK  154 (239)
Q Consensus        80 ~g~l~~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~  154 (239)
                      +|+++..++     ..+.......    . ..+..  + ......+...+.....+-+++..+...+..+++.+.|++.+
T Consensus       249 iG~iv~~~~~~~~~~~~~~~~~~~----~-~~~~~--~-~~~q~a~~~~l~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~  320 (401)
T TIGR01264       249 LGWIIIHDRRGILRDIRDGLVKLS----Q-RILGP--C-TIVQGALPSILLRTPQEYFDGTLSVLESNAMLCYGALAAVP  320 (401)
T ss_pred             EEEEEecCcchhHHHHHHHHHHHh----h-ccCCC--C-cHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            777776432     1111110000    0 00000  0 11111122223221234455566667777788889998877


Q ss_pred             CeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHH-hcCcEEEEEEEECCEeEEEEEecCC
Q 048438          155 RFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESIN-ASGKAYMTNVVLGGIYAIRFATGAT  233 (239)
Q Consensus       155 g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~g~~~lR~~~~~~  233 (239)
                      |+.+..|...+-+.++++.....             ..     .-...+.+++. +.|..+..........++|+++..+
T Consensus       321 ~~~~~~p~~g~f~~~~~~~~~~~-------------~~-----~~~~~~~~~l~~~~gI~v~pg~~f~~~~~iRis~~~~  382 (401)
T TIGR01264       321 GLRPVMPSGAMYMMVGIEMEHFP-------------EF-----KNDVEFTERLVAEQSVFCLPGSCFEYPGFFRVVLTVP  382 (401)
T ss_pred             CCcccCCCeeeEEEEEecccccC-------------CC-----CCHHHHHHHHHHhCCEEEeCchhcCCCCeEEEEEcCC
Confidence            77655455555666665421000             00     00124556665 4566555444443456899998764

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.

>PTZ00433 tyrosine aminotransferase; Provisional

Probab=98.54  E-value=5.6e-06  Score=72.89  Aligned_cols=202  Identities=11%  Similarity=0.032  Sum_probs=106.2

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCC-Cc-ceEEEcCcccCCCc-c
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVE-GA-DSFSLNAHKWFFAT-L   78 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~-~~-Ds~~~~~hK~l~~P-~   78 (239)
                      +-+|+++.-+|.||.+.+   +++|+++|+++|+++++|.++......-..... ...+. .. -.++.++.|.++.| .
T Consensus       178 ~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~-~~~~~~~~~~i~~~SfSK~~~~pGl  256 (412)
T PTZ00433        178 TKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTS-VADFDTTVPRVILGGTAKNLVVPGW  256 (412)
T ss_pred             ceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccc-hhhccCCCceEEEccchhhcCCCCe
Confidence            445667778899998665   777899999999999999998743221111110 11111 11 24577999997544 4


Q ss_pred             cceEEEeeCc-----ccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC
Q 048438           79 DCCCLWATNP-----EYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD  153 (239)
Q Consensus        79 g~g~l~~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~  153 (239)
                      -+|.+++.+|     +++......       .... .+........+..++..-...-+++..++..+..+.+.+.|++.
T Consensus       257 RlG~~i~~~p~~~~~~~~~~~~~~-------~~~~-~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~  328 (412)
T PTZ00433        257 RLGWLLLVDPHGNGGDFLDGMKRL-------GMLV-CGPCSVVQAALGEALLNTPQEHLEQIVAKLEEGAMVLYNHIGEC  328 (412)
T ss_pred             eEEEEEEeCCcccHHHHHHHHHHH-------hhcc-CCCChHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4777776322     222211100       0000 00001111111122221112334555556667778888888876


Q ss_pred             CCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHh-cCcEEEEEEEECCEeEEEEEecC
Q 048438          154 KRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINA-SGKAYMTNVVLGGIYAIRFATGA  232 (239)
Q Consensus       154 ~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~~g~~~lR~~~~~  232 (239)
                      .++.+..+...+-+.++++.....              +.    .-...+.+.|.+ .|..+..........++|+++..
T Consensus       329 ~~~~~~~p~gg~f~~~~l~~~~~~--------------~~----~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRis~~~  390 (412)
T PTZ00433        329 IGLSPTMPRGSMFLMSRLDLEKFR--------------DI----KSDVEFYEKLLEEENVQVLPGEIFHMPGFTRLTISR  390 (412)
T ss_pred             CCCcccCCCeeEEEEEEechhhcC--------------CC----CCHHHHHHHHHHhcCEEEeCccccCCCCeEEEEecC
Confidence            677655343445566666531000              00    001256667664 56655554444335689999875


Q ss_pred             C
Q 048438          233 T  233 (239)
Q Consensus       233 ~  233 (239)
                      +
T Consensus       391 ~  391 (412)
T PTZ00433        391 P  391 (412)
T ss_pred             C
Confidence            4

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=98.54  E-value=2.5e-06  Score=74.93  Aligned_cols=194  Identities=11%  Similarity=0.036  Sum_probs=102.0

Q ss_pred             cEEEEEecCCCCccc----ccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438            5 PLFLCATIGTTAITA----VDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC   80 (239)
Q Consensus         5 p~~vv~t~gtt~~G~----i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~   80 (239)
                      +.+|++.-...+.|.    ...+++|.++|++||+++++|.+|.+......-+.....++. .|.+  ++.|.+++-...
T Consensus       184 ~aaviiEPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~~~~~~~~~v~-pDi~--t~sK~l~gG~~i  260 (406)
T PRK12381        184 TCAVIVEPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVT-PDVL--TTAKALGGGFPI  260 (406)
T ss_pred             eeEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcchhhhHhhCCC-CCEE--EehhhhhCCCce
Confidence            345555544444553    456899999999999999999998543111110100122333 7765  557998643446


Q ss_pred             eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC-CeEEE
Q 048438           81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK-RFEVV  159 (239)
Q Consensus        81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~-g~~~~  159 (239)
                      |.+..+ +++.......      ....++ .+.+........+++.+..   ++..++..++.+++.+.|+++. .+.++
T Consensus       261 g~~~~~-~~~~~~~~~~------~~~~t~-~~~pl~~aaa~a~l~~l~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~  329 (406)
T PRK12381        261 GAMLTT-EKCASVMTVG------THGTTY-GGNPLASAVAGKVLELINT---PEMLNGVKQRHDWFVERLNTINARYGLF  329 (406)
T ss_pred             EEEEEc-HHHHhhcCCC------CCCCCC-CCCHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHHHhhCCCE
Confidence            666654 3333222110      000111 1222223333344544432   2455666688888888887651 12222


Q ss_pred             cCC-C-eeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCCc
Q 048438          160 FPC-H-FAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTEE  237 (239)
Q Consensus       160 ~~~-~-~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~  237 (239)
                      ... . .-++.+.+++..                     ......+.+.+.++|.+...    .+...+|+++....|++
T Consensus       330 ~~vrg~Gl~~~~~l~~~~---------------------~~~~~~~~~~l~~~Gv~v~~----~g~~~lRl~p~~~~t~~  384 (406)
T PRK12381        330 SEIRGLGLLIGCVLNAEY---------------------AGKAKQISQEAAKAGVMVLI----AGPNVVRFAPALNISEE  384 (406)
T ss_pred             EEEecCeEEEEEEecCch---------------------hhHHHHHHHHHHHCCcEEee----CCCCEEEEeCCccCCHH
Confidence            221 1 223444443310                     12334677778888876542    24468999987656544

>PRK03158 histidinol-phosphate aminotransferase; Provisional

Probab=98.53  E-value=2.4e-06  Score=73.67  Aligned_cols=188  Identities=11%  Similarity=0.037  Sum_probs=105.8

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHH--hCCEEEEecccccccccCcccc--cccCCCCCcceEEEcCcccCCCc-cc
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQ--FGIWVHVDAAYAGSACIFPEFR--HFIDGVEGADSFSLNAHKWFFAT-LD   79 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~--~gi~lhvD~A~~~~~~~~~~~~--~~~~~~~~~Ds~~~~~hK~l~~P-~g   79 (239)
                      +-+|+++..+|.||.+.|.++|.++++.  +|+++++|.+|......-....  ...... .-.++..++.|.++.| .-
T Consensus       152 ~~~v~i~~p~NPtG~~~~~~~l~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~-~~vi~~~S~SK~~g~~GlR  230 (359)
T PRK03158        152 TKIVWICNPNNPTGTYVNHEELLSFLESVPSHVLVVLDEAYYEYVTAEDYPDTLPLLEKY-ENLIVLRTFSKAYGLAALR  230 (359)
T ss_pred             CCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchHhhcCCcccccHHHHHHhc-CCEEEEEechHhhcCcchh
Confidence            3455667789999999999999999987  5999999999875432111000  011111 1456778999997644 22


Q ss_pred             ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 048438           80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGM-ENLRHFLRSHVNMARLFERLVSGDKRFEV  158 (239)
Q Consensus        80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-~g~~~~~~~~~~la~~l~~~l~~~~g~~~  158 (239)
                      +|+++. +++.+.......      ..+.      ...+....+...+.. +-+++..+...+..+++.+.|.+. ++.+
T Consensus       231 iG~~v~-~~~~~~~~~~~~------~~~~------~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~  296 (359)
T PRK03158        231 VGYGIA-SEELIEKLNIAR------PPFN------TTRIAQYAAIAALEDQAFLKECVEKNAEGLEQYYAFCKEY-GLFY  296 (359)
T ss_pred             hehhcC-CHHHHHHHHHhc------CCCC------CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCee
Confidence            476664 334333221100      0011      122333333333322 223444444556677788888876 7776


Q ss_pred             EcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCC
Q 048438          159 VFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGAT  233 (239)
Q Consensus       159 ~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~  233 (239)
                      + ++..+.+.+.++..                         ...+.+.|.++|..+.+........++|+++..+
T Consensus       297 ~-~~~g~~i~~~~~~~-------------------------~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~~~~~  345 (359)
T PRK03158        297 Y-PSQTNFIFVDTGRD-------------------------ANELFEALLKKGYIVRSGAALGFPTGVRITIGLK  345 (359)
T ss_pred             C-CCcCcEEEEECCCC-------------------------HHHHHHHHHHCCeEEeeCCCCCCCCeEEEecCCH
Confidence            4 55555555554211                         1255666766776555443333356899997743

>PRK08175 aminotransferase; Validated

Probab=98.53  E-value=3.9e-06  Score=73.44  Aligned_cols=197  Identities=13%  Similarity=0.104  Sum_probs=105.6

Q ss_pred             cEEEEEecCCCCcccccCh---hHHHHHHHHhCCEEEEecccccccccCcccccc--cCCCCCcceEEEcCcccCCCc-c
Q 048438            5 PLFLCATIGTTAITAVDPL---KPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--IDGVEGADSFSLNAHKWFFAT-L   78 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl---~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~~~~~~~Ds~~~~~hK~l~~P-~   78 (239)
                      +-+|+.+..+|.+|.+.+.   ++|+++|++||+++++|.+++-....-......  +.+......++.++.|.++.| .
T Consensus       165 ~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~pGl  244 (395)
T PRK08175        165 PKMMILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSYNMAGW  244 (395)
T ss_pred             ceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCCcccCEEEEeeccccccCcch
Confidence            4566667678999998887   788999999999999999986432211000000  111111335678999998655 2


Q ss_pred             cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 048438           79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEV  158 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~  158 (239)
                      -+|+++. +++.+......    .....++   ...........++.. ...-+++..+...+..+++.+.|++. ++.+
T Consensus       245 RiG~~~~-~~~l~~~~~~~----~~~~~~~---~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~  314 (395)
T PRK08175        245 RIGFMVG-NPELVSALARI----KSYHDYG---TFTPLQVAAIAALEG-DQQCVRDIAEQYKRRRDVLVKGLHEA-GWMV  314 (395)
T ss_pred             hheeeeC-CHHHHHHHHHH----HhhcccC---CCcHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHc-CCcc
Confidence            2566654 44443322110    0000000   001111111222221 22334445555667778888999886 7776


Q ss_pred             EcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHh-cCcEEEEEEEE--CCEeEEEEEec
Q 048438          159 VFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINA-SGKAYMTNVVL--GGIYAIRFATG  231 (239)
Q Consensus       159 ~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~--~g~~~lR~~~~  231 (239)
                      ..+...+.+.++++.....             .+       ...+.+.+.+ .|....+....  .+..++|+++.
T Consensus       315 ~~p~~g~~i~i~l~~~~~~-------------~~-------~~~~~~~l~~~~gv~v~p~~~f~~~~~~~lRis~~  370 (395)
T PRK08175        315 EMPKASMYVWAKIPEPYAA-------------MG-------SLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALI  370 (395)
T ss_pred             cCCCEEEEEEEECCcccCC-------------CC-------HHHHHHHHHHhCCEEEeCchhhCcCCCCeEEEEeC
Confidence            5455566777777642100             00       1255555554 45544443333  23468999975

>PRK05769 4-aminobutyrate aminotransferase; Provisional

Probab=98.52  E-value=9.8e-06  Score=71.98  Aligned_cols=197  Identities=15%  Similarity=0.080  Sum_probs=108.3

Q ss_pred             ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc
Q 048438            4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD   79 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g   79 (239)
                      .+.+|++--...+.|.+.|    +++|.++|++||+.+++|.+|.+.-....-+.....++. .|.+++  .|.+++-..
T Consensus       221 ~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G~~~a~~~~gv~-pDivt~--~K~l~~G~p  297 (441)
T PRK05769        221 EVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGKMFAIEHFGVE-PDIITL--AKAIAGGLP  297 (441)
T ss_pred             ceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccceehhhccCCC-CCEEEE--cccccCCcc
Confidence            3556666666677889889    999999999999999999998852111110000012343 798876  488876555


Q ss_pred             ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC-CeEE
Q 048438           80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK-RFEV  158 (239)
Q Consensus        80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~-g~~~  158 (239)
                      .|.++.++ ++.... ..      ....++ .+.+........+++.+..    +..++..++.++|++.|+++. ...+
T Consensus       298 ~gav~~~~-~i~~~~-~~------~~~~T~-~g~p~~~aaa~a~L~~l~~----~~~~~~~~~g~~l~~~L~~l~~~~~~  364 (441)
T PRK05769        298 LGAVIGRA-ELMFLP-PG------SHANTF-GGNPVAAAAALATLEELEE----GLLENAQKLGEYLRKELKELKEKYEF  364 (441)
T ss_pred             cEEEEEeh-hhhhcC-CC------CCCCCC-CcCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            77777653 332211 10      000111 1222222333334444422    455666688888888886541 1222


Q ss_pred             EcCC--CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCC
Q 048438          159 VFPC--HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTE  236 (239)
Q Consensus       159 ~~~~--~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~  236 (239)
                      +...  ...++.+.+.....              ..   ..+....+.+.+.++|.+...    .|...+|+++....|+
T Consensus       365 ~~~vrg~G~~~~i~~~~~~~--------------~~---~~~~~~~~~~~~~~~Gil~~~----~~~~~lr~~p~l~~t~  423 (441)
T PRK05769        365 IGDVRGLGLMIGVELVKDRK--------------EP---DPKLRDKVLYEAFKRGLLLLG----AGKSAIRIIPPLIITE  423 (441)
T ss_pred             eeeeecceEEEEEEeccCCc--------------cc---cHHHHHHHHHHHHhCCcEEec----CCCCEEEEeCCCCCCH
Confidence            2221  23355555533210              00   023445677778888866432    3557899997665554


Q ss_pred             c
Q 048438          237 E  237 (239)
Q Consensus       237 ~  237 (239)
                      +
T Consensus       424 ~  424 (441)
T PRK05769        424 E  424 (441)
T ss_pred             H
Confidence            4

>PLN00175 aminotransferase family protein; Provisional

Probab=98.52  E-value=5.7e-06  Score=72.87  Aligned_cols=195  Identities=13%  Similarity=0.067  Sum_probs=107.1

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccc--cCCCCCcceEEEcCcccCCCc-c
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--IDGVEGADSFSLNAHKWFFAT-L   78 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~~~~~~~Ds~~~~~hK~l~~P-~   78 (239)
                      +-+|+++..+|.||.+.+   +++|+++|++|++|+++|.+|......-+ ....  +.+...-.+++.++.|.++.| .
T Consensus       188 ~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~-~~s~~~~~~~~~~vi~i~SfSK~~~~~G~  266 (413)
T PLN00175        188 TRAILINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGD-HISMASLPGMYERTVTMNSLGKTFSLTGW  266 (413)
T ss_pred             ceEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCCc-ccChhhCCCCcCcEEEEecchhhccCcch
Confidence            446677788899999865   77789999999999999999875433111 1110  112112346778999998755 2


Q ss_pred             cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 048438           79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEV  158 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~  158 (239)
                      -+|+++. .+..+......    .....+.  .+ .+....+..+++. +..-+++..++..+..+++.+.|++. |+++
T Consensus       267 RiG~~v~-~~~l~~~l~~~----~~~~~~~--~s-~~~Q~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~  336 (413)
T PLN00175        267 KIGWAIA-PPHLTWGVRQA----HSFLTFA--TA-TPMQWAAVAALRA-PESYYEELKRDYSAKKDILVEGLKEV-GFKV  336 (413)
T ss_pred             heeeeEe-CHHHHHHHHHH----HhhccCC--CC-HHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHHC-CCee
Confidence            3566665 33333222100    0000000  00 1111112222322 33345666667777888899999886 7876


Q ss_pred             EcCCCeeE-EEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHh-cCcEEEEEEEE-----CCEeEEEEEec
Q 048438          159 VFPCHFAV-VCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINA-SGKAYMTNVVL-----GGIYAIRFATG  231 (239)
Q Consensus       159 ~~~~~~~i-v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~-----~g~~~lR~~~~  231 (239)
                      . +++.+. +.+++.+.+..                     -...+.+.|.+ .|..+.+....     .+..++|+++.
T Consensus       337 ~-~p~g~~f~~~~~~~~~~~---------------------~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRls~~  394 (413)
T PLN00175        337 Y-PSSGTYFVMVDHTPFGFE---------------------NDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAFC  394 (413)
T ss_pred             c-CCCeeEEEEEeccccCCC---------------------CHHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEEEEc
Confidence            5 444443 44444321110                     01255566654 46665554433     23568999987


Q ss_pred             C
Q 048438          232 A  232 (239)
Q Consensus       232 ~  232 (239)
                      .
T Consensus       395 ~  395 (413)
T PLN00175        395 K  395 (413)
T ss_pred             C
Confidence            4

>PLN02376 1-aminocyclopropane-1-carboxylate synthase

Probab=98.52  E-value=4.5e-06  Score=75.14  Aligned_cols=202  Identities=12%  Similarity=0.033  Sum_probs=103.7

Q ss_pred             CccEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCccccc---ccCCCC--C--cc--eEEEcC
Q 048438            3 LIPLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRH---FIDGVE--G--AD--SFSLNA   70 (239)
Q Consensus         3 ~~p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~---~~~~~~--~--~D--s~~~~~   70 (239)
                      ..+-+|+++.-+|.||.+.+   +++|+++|++|++++++|.+|+.....-+.+..   .....+  .  .|  .++.++
T Consensus       198 ~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~  277 (496)
T PLN02376        198 KKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSL  277 (496)
T ss_pred             CCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCcccHHHhhccccccccCCCeEEEEEec
Confidence            34566777888999999888   566788899999999999999864322111111   111100  0  12  236799


Q ss_pred             cccCCCc-ccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHH-----HHHHHHHHHHHHH
Q 048438           71 HKWFFAT-LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMEN-----LRHFLRSHVNMAR  144 (239)
Q Consensus        71 hK~l~~P-~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g-----~~~~~~~~~~la~  144 (239)
                      +|.++.| .-+|+++..++.........       ..+..     ...+...++...+....     +++..++..+..+
T Consensus       278 SK~~glpGlRvG~li~~~~~l~~~~~~~-------~~~~~-----vs~~~Q~a~~~~L~d~~~~~~~l~~~r~~l~~r~~  345 (496)
T PLN02376        278 SKDMGLPGFRVGIVYSFNDSVVSCARKM-------SSFGL-----VSSQTQLMLASMLSDDQFVDNFLMESSRRLGIRHK  345 (496)
T ss_pred             cccCCCCcceEEEEEECCHHHHHHHHHH-------hhcCC-----CCHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHH
Confidence            9998655 55788776433222211000       00000     11122222222222222     2223344455566


Q ss_pred             HHHHHHhCCCCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhc-CcEEEEEEEE--C
Q 048438          145 LFERLVSGDKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINAS-GKAYMTNVVL--G  221 (239)
Q Consensus       145 ~l~~~l~~~~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~--~  221 (239)
                      .+.+.|++. |++++.+....-+.+.++....               +... -+....+.+.|.++ |..+.+....  .
T Consensus       346 ~l~~~L~~~-gi~~~~~~aG~flwi~l~~~~~---------------~~~~-~~~e~~l~~~ll~~~gV~v~pGs~F~~~  408 (496)
T PLN02376        346 VFTTGIKKA-DIACLTSNAGLFAWMDLRHLLR---------------DRNS-FESEIELWHIIIDKVKLNVSPGSSFRCT  408 (496)
T ss_pred             HHHHHHHHC-CCcccCCCceEEEEEEchhhhc---------------cCCc-hhHHHHHHHHHHHcCCEEEeCccccCCC
Confidence            777888774 7776544333444455532100               0000 00112566666665 4444443433  2


Q ss_pred             CEeEEEEEecCC
Q 048438          222 GIYAIRFATGAT  233 (239)
Q Consensus       222 g~~~lR~~~~~~  233 (239)
                      +..++|+++.+.
T Consensus       409 ~~g~~Ri~fa~~  420 (496)
T PLN02376        409 EPGWFRICFANM  420 (496)
T ss_pred             CCCEEEEEeeCC
Confidence            357999998863

>PRK04781 histidinol-phosphate aminotransferase; Provisional

Probab=98.52  E-value=5.5e-06  Score=71.73  Aligned_cols=188  Identities=11%  Similarity=0.020  Sum_probs=108.5

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHH--hCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-ccce
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQ--FGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-LDCC   81 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~--~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~g   81 (239)
                      +-+|+++.-+|.||.+.|.+++.++++.  +++++++|.+++-... .+.........+. =.++.++.|.++.| .-+|
T Consensus       153 ~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~~~~~iI~Deay~~f~~-~~~~~~~~~~~~~-vi~~~SfSK~~gl~GlRvG  230 (364)
T PRK04781        153 AKLVFLCSPSNPAGSAIALDQIERALQALQGKALVVVDEAYGEFSD-VPSAVGLLARYDN-LAVLRTLSKAHALAAARIG  230 (364)
T ss_pred             CeEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCcchhhcC-CcchHHHHhhCCC-EEEEecChhhcccccceee
Confidence            4456667788999999999998888875  4899999999874321 1111011111111 15677999997644 3366


Q ss_pred             EEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHh--C-HHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 048438           82 CLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNY--G-MENLRHFLRSHVNMARLFERLVSGDKRFEV  158 (239)
Q Consensus        82 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--g-~~g~~~~~~~~~~la~~l~~~l~~~~g~~~  158 (239)
                      +++. .++++.......      ..+.      ..++....+...+  + .+...+.+++..+..+++.+.|++++++..
T Consensus       231 y~v~-~~~l~~~l~~~~------~~~~------~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~  297 (364)
T PRK04781        231 SLIA-NAELIAVLRRCQ------APYP------VPTPCAALAEQALSAPALAVTARRVAEVRAERERLHAALAQLPGVRR  297 (364)
T ss_pred             eeeC-CHHHHHHHHhcc------CCCC------CCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCCe
Confidence            6664 344443222100      0011      1112222222222  2 234455556666777889999988878754


Q ss_pred             EcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEEC-CEeEEEEEecCC
Q 048438          159 VFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLG-GIYAIRFATGAT  233 (239)
Q Consensus       159 ~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~-g~~~lR~~~~~~  233 (239)
                      +.++..+-+.++++..                          ..+.+.|.++|..+....... ...++|+++..+
T Consensus       298 ~~p~~g~f~~~~~~~~--------------------------~~~~~~l~~~gI~v~~~~~~~~~~~~~Ris~~~~  347 (364)
T PRK04781        298 VYPSQGNFLLVRFDDA--------------------------EAAFQALLAAGVVVRDQRAAPRLSDALRITLGTP  347 (364)
T ss_pred             ECCCCCcEEEEEcCCH--------------------------HHHHHHHHHCCeEEeeCCCCCCCCCeEEEeCCCH
Confidence            4566667666666421                          255667777777766544332 246899998754

>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=98.51  E-value=3.1e-06  Score=74.01  Aligned_cols=200  Identities=13%  Similarity=0.061  Sum_probs=113.8

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCccccccc--CCCCCcceEEEcCcccCCCc-c
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFI--DGVEGADSFSLNAHKWFFAT-L   78 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~--~~~~~~Ds~~~~~hK~l~~P-~   78 (239)
                      +-+|+++.-+|.||++-+   +++|+++|++||+|++.|.+|......-..+....  .+....=+..-|+.|.++.+ .
T Consensus       164 tk~i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~mtGw  243 (393)
T COG0436         164 TKAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYGMTGW  243 (393)
T ss_pred             ceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCCcceEEEEeccccccccccc
Confidence            458899999999999766   78889999999999999999875433221111111  11001223344899997644 3


Q ss_pred             cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438           79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYG-MENLRHFLRSHVNMARLFERLVSGDKRFE  157 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~g~~~~~~~~~~la~~l~~~l~~~~g~~  157 (239)
                      =+|++...++.++.....       .......+...+...+...+|+.-. .+.++...+...+..+.+.+.|.+++|++
T Consensus       244 RvG~~v~~~~~l~~~~~~-------~~~~~~~~~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~rrd~l~~~l~~~~g~~  316 (393)
T COG0436         244 RIGWVVGPPEELIAALRK-------LKSYLTSCAPTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLVEALNEIGGLS  316 (393)
T ss_pred             ceeEeecChHHHHHHHHH-------HHHhcccCCCHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCee
Confidence            367776643333322210       0000111111111122223333211 13444454667788899999999998899


Q ss_pred             EEcCCCeeE-EEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEE-EEEC---CEeEEEEEecC
Q 048438          158 VVFPCHFAV-VCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTN-VVLG---GIYAIRFATGA  232 (239)
Q Consensus       158 ~~~~~~~~i-v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~-~~~~---g~~~lR~~~~~  232 (239)
                      +..+|+... +...++...                       -...+.++|.++..+.+.+ ....   |...+|++...
T Consensus       317 ~~~~p~Ga~Y~~~~i~~~~-----------------------d~~~f~~~Ll~~~gV~v~PG~~Fg~~~g~~~vRis~~~  373 (393)
T COG0436         317 VVKPPEGAFYLFPKIPELL-----------------------DSEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRLSLAT  373 (393)
T ss_pred             eccCCCeeEEEEeecCCCC-----------------------CHHHHHHHHHHhCCEEEecccccCCCCCCCeEEEEEec
Confidence            988665444 333333211                       0125666776666555544 3332   56799999876


Q ss_pred             CC
Q 048438          233 TL  234 (239)
Q Consensus       233 ~~  234 (239)
                      ..
T Consensus       374 ~~  375 (393)
T COG0436         374 SE  375 (393)
T ss_pred             CH
Confidence            54

>PRK09265 aminotransferase AlaT; Validated

Probab=98.51  E-value=1.3e-05  Score=70.41  Aligned_cols=197  Identities=10%  Similarity=-0.004  Sum_probs=101.0

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCC-CCcceE-EEcCcccCCCcc-
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGV-EGADSF-SLNAHKWFFATL-   78 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~-~~~Ds~-~~~~hK~l~~P~-   78 (239)
                      +-+|+++..+|.||.+.|   +++|+++|+++|+++++|.+++........... +..+ .....+ ..++.|.++.|. 
T Consensus       169 ~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~-~~~~~~~~~vi~~~S~SK~~~~pGl  247 (404)
T PRK09265        169 TKAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHIS-IASLAPDLLCVTFNGLSKAYRVAGF  247 (404)
T ss_pred             ceEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCC-HHHcCCCceEEEEecchhhccCccc
Confidence            456777788999999998   899999999999999999998643221111111 1111 112344 457799986552 


Q ss_pred             cceEEEeeCcc-----cccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCH-HHHHHH---HHHHHHHHHHHHHH
Q 048438           79 DCCCLWATNPE-----YLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGM-ENLRHF---LRSHVNMARLFERL  149 (239)
Q Consensus        79 g~g~l~~~~~~-----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-~g~~~~---~~~~~~la~~l~~~  149 (239)
                      -+|+++...+.     ++.....     .....+.      ...+...++...++. +.+.+.   .++..+..+++.+.
T Consensus       248 RiG~~v~~~~~~~~~~~~~~~~~-----~~~~~~~------~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~  316 (404)
T PRK09265        248 RVGWMVLSGPKKHAKGYIEGLDM-----LASMRLC------ANVPAQHAIQTALGGYQSINELILPGGRLYEQRDRAWEL  316 (404)
T ss_pred             ceEEEEEeCchHHHHHHHHHHHH-----HhccccC------CCcHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHH
Confidence            25777653222     1111100     0000000      111112222222221 112222   23445567778888


Q ss_pred             HhCCCCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEE--CCEeEEE
Q 048438          150 VSGDKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVL--GGIYAIR  227 (239)
Q Consensus       150 l~~~~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~--~g~~~lR  227 (239)
                      |++.+++++..+.....+.+++++....             ..     .-...+.+.+.+.|..+......  .+..++|
T Consensus       317 L~~~~~~~~~~p~~g~~l~~~~~~~~~~-------------~~-----~~~~~~~~~l~~~gv~v~pg~~F~~~~~~~~R  378 (404)
T PRK09265        317 LNAIPGVSCVKPKGALYAFPKLDPKVYP-------------IH-----DDEQFVLDLLLQEKVLLVQGTGFNWPEPDHFR  378 (404)
T ss_pred             HhcCCCCcccCCCcceEEEEEecccccC-------------CC-----CHHHHHHHHHHhCCEEEECchhhCCCCCCeEE
Confidence            8887787765443444555566542100             00     00113444555666655544433  2356899


Q ss_pred             EEec
Q 048438          228 FATG  231 (239)
Q Consensus       228 ~~~~  231 (239)
                      +++.
T Consensus       379 i~~~  382 (404)
T PRK09265        379 IVTL  382 (404)
T ss_pred             EEeC
Confidence            9985

>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase

Probab=98.51  E-value=4.1e-06  Score=72.89  Aligned_cols=135  Identities=10%  Similarity=0.116  Sum_probs=72.2

Q ss_pred             CCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCc--ccCCC-cccceEEEeeCccc
Q 048438           14 TTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAH--KWFFA-TLDCCCLWATNPEY   90 (239)
Q Consensus        14 tt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~h--K~l~~-P~g~g~l~~~~~~~   90 (239)
                      ++.+|...|+++|.++|++||+++++|+||+.+.. .+..+  ...+  .|+-++|+|  |.+.. +. .|++++.++++
T Consensus       126 ~~~~G~~~d~~~I~~la~~~~i~vIeDaa~~~g~~-~~~~~--~g~~--~~~~~fSf~~~K~l~~g~~-gG~v~~~~~~~  199 (376)
T TIGR02379       126 VHYAGVACDMDTIMALANKHQLFVIEDAAQGVMST-YKGRA--LGSI--GHLGTFSFHETKNYTSGGE-GGALLINDQAF  199 (376)
T ss_pred             eCCCCCccCHHHHHHHHHHCCCEEEEECccccCCc-cCCcc--cCCC--CCEEEEeCCCCCcCcccCC-ceEEEECCHHH
Confidence            34689999999999999999999999999998753 21100  1111  355555554  54432 23 46666655543


Q ss_pred             cccccc--CCC----Ccc--CCCCce-ecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 048438           91 LKNKAT--ESK----PVV--DYKDWQ-ITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK  154 (239)
Q Consensus        91 l~~~~~--~~~----~~~--~~~~~~-~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~  154 (239)
                      ......  ..+    ...  ....+. ...+.+++.-.+-+++-.-..+.+.++.++..+++++..+.|+.++
T Consensus       200 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aa~g~~qL~~l~~~~~~r~~~~~~y~~~L~~~~  272 (376)
T TIGR02379       200 IERAEIIREKGTNRSQFFRGEVDKYTWRDIGSSYLPSELQAAYLWAQLEQADRINQDRLATWQLYQDALKPLE  272 (376)
T ss_pred             HHHHHHHHHhCCCCccccccCCCcceeeeecccCCccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCC
Confidence            322211  000    000  000011 1123332221111221111234566777777788888888887654

This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).

>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated

Probab=98.49  E-value=1.1e-05  Score=71.37  Aligned_cols=192  Identities=12%  Similarity=0.026  Sum_probs=100.2

Q ss_pred             cEEEEEecCCCCccccc----ChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCC-ccc
Q 048438            5 PLFLCATIGTTAITAVD----PLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFA-TLD   79 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~----pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~-P~g   79 (239)
                      ..+|++--...+.|.+-    .+++|.++|++||+++++|.+|++.--....+.....++. .|.++++  |.++. -..
T Consensus       199 ~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~~~~~~~v~-PDi~t~~--K~l~~~G~p  275 (425)
T PRK09264        199 PAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFFSFERAGIT-PDIVTLS--KSISGYGLP  275 (425)
T ss_pred             eEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccHHHHHhhcCCC-CCEEEec--cccCCCccc
Confidence            45666665666667643    5999999999999999999999753111110000023443 8988774  98764 233


Q ss_pred             ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHH-HHhCHHHHHHHHHHHHHHHHHHHHHHhCC----C
Q 048438           80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVI-RNYGMENLRHFLRSHVNMARLFERLVSGD----K  154 (239)
Q Consensus        80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~g~~g~~~~~~~~~~la~~l~~~l~~~----~  154 (239)
                      +|++++++ ++ ......      ....++ .+.+...+....++ ..+..+   +..++..++.+++.+.|+++    +
T Consensus       276 igav~~~~-~i-~~~~~~------~~~~T~-~gnp~~~aaa~a~l~~~~~~~---~l~~~~~~~g~~l~~~l~~l~~~~~  343 (425)
T PRK09264        276 MALVLIKP-EL-DVWKPG------EHNGTF-RGNNLAFVTATAALEEYWSDD---AFEKEVKAKGELVRERLEEIAAKYP  343 (425)
T ss_pred             eEEEEEch-hh-hccCCC------ccCCCC-CCCHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            57777753 32 211100      000011 11111222222344 222222   34455557777777776542    2


Q ss_pred             CeEEEcCC-CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCC
Q 048438          155 RFEVVFPC-HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGAT  233 (239)
Q Consensus       155 g~~~~~~~-~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~  233 (239)
                      .+ +.... ...++.+.+.+                       ......+.+.+.++|.++... .. +...||+++...
T Consensus       344 ~~-~~~vrg~Gl~~~i~l~~-----------------------~~~~~~l~~~~~~~Gv~~~~~-~~-~~~~lr~~p~l~  397 (425)
T PRK09264        344 GL-GAEVRGRGMMQGIDFGD-----------------------GELAGKIAAEAFENGLIIETS-GP-EDEVVKLLPPLT  397 (425)
T ss_pred             Cc-eecceecccEEEEEecC-----------------------hHHHHHHHHHHHHCCCEEecc-CC-CCCEEEEeCCCC
Confidence            22 11111 22345555543                       233446777888888765431 11 236889987665


Q ss_pred             CCCc
Q 048438          234 LTEE  237 (239)
Q Consensus       234 ~t~~  237 (239)
                      .|++
T Consensus       398 ~t~~  401 (425)
T PRK09264        398 IDEE  401 (425)
T ss_pred             CCHH
Confidence            6544

>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]

Probab=98.48  E-value=2.2e-06  Score=72.14  Aligned_cols=188  Identities=15%  Similarity=0.126  Sum_probs=118.3

Q ss_pred             EEEEecCCCCcccccC-hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEEe
Q 048438            7 FLCATIGTTAITAVDP-LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWA   85 (239)
Q Consensus         7 ~vv~t~gtt~~G~i~p-l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~   85 (239)
                      .|..+...|.+|+--| .+.+..     +..+++|++-++...++|     +.   +.|.|.++.+|.+ +|.|.+++++
T Consensus       147 yv~~~~NeTi~Gv~v~~~p~~~~-----~~~~v~D~SS~ilsr~iD-----vs---k~dviyagaQKnl-GpaGltvvIv  212 (365)
T COG1932         147 YVHFCWNETISGVEVPELPDIGS-----DGLLVADASSAILSRPID-----VS---KYDVIYAGAQKNL-GPAGLTVVIV  212 (365)
T ss_pred             EEEEecCCcccceEccCCCCCCC-----CceEEEecccHHhcCCCC-----hh---HcceEEEehhhcc-CccceEEEEE
Confidence            4888889999999443 444432     278999999888877776     33   4999999999996 5889998888


Q ss_pred             eCcccccccccC-CCCccCCCCceecCCCC--CChHHHHH---HHHHh-CHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 048438           86 TNPEYLKNKATE-SKPVVDYKDWQITLSRS--FRSLKLWF---VIRNY-GMENLRHFLRSHVNMARLFERLVSGDKRFEV  158 (239)
Q Consensus        86 ~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~---~l~~~-g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~  158 (239)
                      + ++.+.+.... .+..+++.......++-  ...+.++.   .++.+ ...|++...++..+-++.|++.+.+. +|-.
T Consensus       213 r-~~~l~r~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GGl~~~~~rn~~ka~~LY~~id~s-~fy~  290 (365)
T COG1932         213 R-PDLLERAESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQGGLEALEARNQAKAQLLYDWIDKS-DFYR  290 (365)
T ss_pred             c-HHHHhcccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhC-Cccc
Confidence            5 4555555322 12222221111111111  11233322   23333 22377777778889999999999886 4421


Q ss_pred             --EcC-CC-eeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCC
Q 048438          159 --VFP-CH-FAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATL  234 (239)
Q Consensus       159 --~~~-~~-~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~  234 (239)
                        +.+ .+ .-.|||.+.+                       .++...+.+.+.++|..........|.  +|+++.|-.
T Consensus       291 ~~v~~~~RS~mnV~f~~~~-----------------------~~ld~~fv~eae~~gl~~lkGhr~vgG--mRasiynA~  345 (365)
T COG1932         291 NLVAKANRSRMNVTFTLVD-----------------------AELDKGFVAEAEAAGLIYLKGHRSVGG--LRASIYNAV  345 (365)
T ss_pred             cccchhhccceeEEEEcCc-----------------------HHHHHHHHHHHHHcCCceeccccCCCc--eeeeeecCC
Confidence              111 22 3358899875                       467778888888888877765333233  899987754


Q ss_pred             C
Q 048438          235 T  235 (239)
Q Consensus       235 t  235 (239)
                      .
T Consensus       346 ~  346 (365)
T COG1932         346 P  346 (365)
T ss_pred             C
Confidence            3

>PRK06541 hypothetical protein; Provisional

Probab=98.48  E-value=7.6e-06  Score=73.02  Aligned_cols=212  Identities=8%  Similarity=-0.014  Sum_probs=108.8

Q ss_pred             ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcc-
Q 048438            4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATL-   78 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~-   78 (239)
                      .+.+|++.-...+.|.+.|    +++|.++|++||+.+++|.+|.+.--....+.....++. .|.++  +-|.+++-+ 
T Consensus       221 ~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G~~~a~~~~gv~-PDivt--~gK~l~~G~~  297 (460)
T PRK06541        221 TVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGEMFGCERFGYV-PDIIT--CAKGITSGYS  297 (460)
T ss_pred             CEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchhhhhhhcCCC-CCEEE--ecccccCCcc
Confidence            4556666666777899988    999999999999999999999432121221111123443 88876  689887522 


Q ss_pred             cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 048438           79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEV  158 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~  158 (239)
                      ..|.++.++ +......... ..+ ....++ .+.+..+......++.+..+   +..++..++.++|.+.|+++....+
T Consensus       298 pigav~~~~-~i~~~~~~~~-~~~-~~~~T~-~gnp~~~aaala~l~~l~~~---~~~~~~~~~g~~l~~~L~~l~~~~~  370 (460)
T PRK06541        298 PLGAMIASD-RLFEPFLDGP-TMF-LHGYTF-GGHPVSAAVALANLDIFERE---GLLDHVRDNEPAFRATLEKLLDLPI  370 (460)
T ss_pred             ceeEEEEcH-HHHHHhhcCC-Ccc-ccCCCC-CCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            356666643 3322211100 000 000111 11122222233344444333   3445666888899998877532222


Q ss_pred             EcC--CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHH-HHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCC
Q 048438          159 VFP--CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQIN-EFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLT  235 (239)
Q Consensus       159 ~~~--~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t  235 (239)
                      +..  ....+..+.+.....          ...+-+.+..+ .....+.+.|.++|.+...  ...|..++|+++....|
T Consensus       371 v~~vrg~Gl~~~ie~~~~~~----------~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~--~~~g~~~lrl~Ppl~~t  438 (460)
T PRK06541        371 VGDVRGDGYFYGIELVKDKA----------TKETFTDDESERLLRGFLSPALFEAGLYCRA--DDRGDPVVQLAPPLISG  438 (460)
T ss_pred             eEEEEecceEEEEEEecCcc----------cccCCcchhhhhhHHHHHHHHHHhCCeEEEe--cCCCCCEEEEECCCCCC
Confidence            211  223345555532110          00000001111 1223667788877765432  12355789999776665


Q ss_pred             Cc
Q 048438          236 EE  237 (239)
Q Consensus       236 ~~  237 (239)
                      ++
T Consensus       439 ~~  440 (460)
T PRK06541        439 QE  440 (460)
T ss_pred             HH
Confidence            54

>PTZ00377 alanine aminotransferase; Provisional

Probab=98.48  E-value=1.3e-05  Score=72.03  Aligned_cols=42  Identities=17%  Similarity=0.174  Sum_probs=35.9

Q ss_pred             ccEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEeccccc
Q 048438            4 IPLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAG   45 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~   45 (239)
                      .+-+|+++.-+|.||.+.+   +++|+++|++||+++++|.+|.-
T Consensus       218 ~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~  262 (481)
T PTZ00377        218 TPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQE  262 (481)
T ss_pred             CeeEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhHh
Confidence            4556666677899999988   88899999999999999999864

>PRK04870 histidinol-phosphate aminotransferase; Provisional

Probab=98.47  E-value=3e-06  Score=73.07  Aligned_cols=185  Identities=11%  Similarity=0.076  Sum_probs=107.9

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ceE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCC   82 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~   82 (239)
                      +-+|+++.-+|.||.+.|.+++.++++..++++++|.++.....  ..+...+...+ --.++.+++|+ + ..|  +|+
T Consensus       154 ~~~v~l~~p~NPtG~~~~~~~~~~i~~~~~~~ii~De~y~~~~~--~~~~~~~~~~~-~vi~~~S~SK~-~-~~GlRiG~  228 (356)
T PRK04870        154 PALVFLAYPNNPTGNLFDDADVERIIEAAPGLVVVDEAYQPFAG--DSWLPRLARFP-NLLVMRTVSKL-G-LAGLRLGY  228 (356)
T ss_pred             CCEEEEcCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCchhhcC--cchHHHHhhCC-CEEEEecchhh-h-hHHHhhhh
Confidence            44566677789999999999999998877999999999864221  11111122222 23678899994 3 334  676


Q ss_pred             EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcCC
Q 048438           83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPC  162 (239)
Q Consensus        83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~~  162 (239)
                      ++. .++++.......      ..+.  .+ .+.......+++.  .+.+++..++..+..+++.+.|++.+|+.+ .++
T Consensus       229 ~i~-~~~~i~~~~~~~------~~~~--~~-~~~q~~a~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~  295 (356)
T PRK04870        229 LAG-HPAWIAELDKVR------PPYN--VN-VLTQATALFALEH--VDVLDAQAAQLRAERTRLAAALAALPGVTV-FPS  295 (356)
T ss_pred             hhC-CHHHHHHHHHcc------CCCc--CC-HHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHHHhCCCcEE-CCC
Confidence            664 334433321100      0011  00 0111111122221  234566777777888899999988888875 456


Q ss_pred             CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEEC--CEeEEEEEecCC
Q 048438          163 HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLG--GIYAIRFATGAT  233 (239)
Q Consensus       163 ~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~--g~~~lR~~~~~~  233 (239)
                      ..+.+.+++++.                          ..+.+.|.++|..........  +..++|+++..+
T Consensus       296 ~~~~~~~~~~~~--------------------------~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis~~~~  342 (356)
T PRK04870        296 AANFILVRVPDA--------------------------AAVFDGLKTRGVLVKNLSGMHPLLANCLRVTVGTP  342 (356)
T ss_pred             CCeEEEEECCCH--------------------------HHHHHHHHHCCEEEEECCCCCCCCCCeEEEeCCCH
Confidence            667777766420                          145566666776655433332  356899998753

>TIGR03372 putres_am_tran putrescine aminotransferase

Probab=98.46  E-value=2.1e-05  Score=69.81  Aligned_cols=199  Identities=11%  Similarity=0.014  Sum_probs=108.8

Q ss_pred             CccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-
Q 048438            3 LIPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-   77 (239)
Q Consensus         3 ~~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-   77 (239)
                      ....+|++--...+-|.+.|    +++|.++|++||+.+++|.+|.+.--...-+.....++. .|.++  .-|.+++- 
T Consensus       223 ~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~-PDivt--~gK~lg~G~  299 (442)
T TIGR03372       223 DDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMFACEHEGVQ-PDILC--LAKALGGGV  299 (442)
T ss_pred             CcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCccccchhhhhcCCC-CCeee--ehhhhcCCc
Confidence            34566777666677888888    999999999999999999999642111111111123443 89877  57998753 


Q ss_pred             ccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC-Ce
Q 048438           78 LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK-RF  156 (239)
Q Consensus        78 ~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~-g~  156 (239)
                      ..+|.++.++ +........ .  .  ...+-.++.+.......++|+.+..++   ..++..++.+++.+.|+++. .+
T Consensus       300 ~Pigavv~~~-~i~~~~~~~-~--~--~~~~T~~gnp~~~Aaa~a~L~~i~~~~---l~~~~~~~G~~l~~~L~~l~~~~  370 (442)
T TIGR03372       300 MPIGATIATE-AVFSVLFDN-P--F--LHTTTFGGNPLACAAALATINELLEKN---LPAQAAIKGDFLLDGFQQLAAEY  370 (442)
T ss_pred             ccceEEEecH-HHHHhhhcc-C--c--cccCCCCCCHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHhC
Confidence            2356666643 332222100 0  0  000111122223333334455554443   34445577777777776531 11


Q ss_pred             E-EEcC--CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCC
Q 048438          157 E-VVFP--CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGAT  233 (239)
Q Consensus       157 ~-~~~~--~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~  233 (239)
                      . .+.+  ....++.+.+...                       +....+.+.|.++|.+.. ... .+...+|+.+...
T Consensus       371 ~~~i~~vRG~Gl~~giel~~~-----------------------~~~~~i~~~l~~~Gvl~~-~~~-~~~~~lr~~Ppl~  425 (442)
T TIGR03372       371 PDLIIEARGKGLLMAIEFRDN-----------------------EIGYAFAKELFQQNILVA-GTL-NNAKSIRIEPPLT  425 (442)
T ss_pred             CCceEEEecceEEEEEEeCCh-----------------------HHHHHHHHHHHHCCcEEe-ecC-CCCCEEEEECCcc
Confidence            1 1111  2234566666431                       233467788888876543 221 1346899998777


Q ss_pred             CCCcC
Q 048438          234 LTEER  238 (239)
Q Consensus       234 ~t~~~  238 (239)
                      .|++|
T Consensus       426 ~t~~~  430 (442)
T TIGR03372       426 ITIEQ  430 (442)
T ss_pred             cCHHH
Confidence            76653

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.

>PRK13578 ornithine decarboxylase; Provisional

Probab=98.46  E-value=5.7e-07  Score=83.08  Aligned_cols=152  Identities=14%  Similarity=0.095  Sum_probs=93.2

Q ss_pred             CccEEEEEecCCCCcccccChhHHHHH-HHHhCCEEEEecccccccccCccccccc--CCCCCcc----eEEEcCcccCC
Q 048438            3 LIPLFLCATIGTTAITAVDPLKPLCDV-AKQFGIWVHVDAAYAGSACIFPEFRHFI--DGVEGAD----SFSLNAHKWFF   75 (239)
Q Consensus         3 ~~p~~vv~t~gtt~~G~i~pl~~i~~i-~~~~gi~lhvD~A~~~~~~~~~~~~~~~--~~~~~~D----s~~~~~hK~l~   75 (239)
                      ++|+-.++....|..|.+-++++|+++ +|.++ .+|||.||++..-+.+.++.+-  ..-.++|    +++-|.||.|.
T Consensus       280 ~~p~k~vvit~pTYdG~~ydi~~I~~~~~h~~~-~llvDEAhgah~~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~  358 (720)
T PRK13578        280 ARPFRLAVIQLGTYDGTIYNARQVVDKIGHLCD-YILFDSAWVGYEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQQA  358 (720)
T ss_pred             ccCceEEEEECCCCcceeecHHHHHHHhhccCC-cEEEeCcchhhhccCcccccCChhhhhcCCCCCCeEEEEChhhcch
Confidence            366655566667889999999999999 68888 9999999998766555432210  0012589    99999999999


Q ss_pred             CcccceEEEeeCcccccccccCCCCccCCC----CceecCCCCCChHHHHHHHH----HhCHHHHHHHHHHHHHHHHHHH
Q 048438           76 ATLDCCCLWATNPEYLKNKATESKPVVDYK----DWQITLSRSFRSLKLWFVIR----NYGMENLRHFLRSHVNMARLFE  147 (239)
Q Consensus        76 ~P~g~g~l~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~----~~g~~g~~~~~~~~~~la~~l~  147 (239)
                      +-..++.+.+++. .+....    .+++..    .+..-.++. .+..+.+++.    .+..+.-++.++...+++..++
T Consensus       359 alTQaS~LHvk~~-~i~g~~----~~v~~~r~~~al~m~qSTS-PsY~LmASLDva~~~m~~~~G~~l~~~~i~~a~~~R  432 (720)
T PRK13578        359 GFSQTSQIHKKDN-HIKGQA----RYCPHKRLNNAFMLHASTS-PFYPLFAALDVNAKMHEGESGRRLWMECVKLGIEAR  432 (720)
T ss_pred             hhhhHhhhhcCCc-cccccc----ccCCHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence            9999999888653 221100    000000    011111111 1233333332    1211112455666778888888


Q ss_pred             HHH-hCCCCeEEEcC
Q 048438          148 RLV-SGDKRFEVVFP  161 (239)
Q Consensus       148 ~~l-~~~~g~~~~~~  161 (239)
                      +.| +.+++|+++.+
T Consensus       433 ~~l~~~~~~~~~~~p  447 (720)
T PRK13578        433 KLILARCKLIRPFIP  447 (720)
T ss_pred             HHHHHhCCCeeeccc
Confidence            888 77788888753

>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions

Probab=98.45  E-value=9.2e-07  Score=76.54  Aligned_cols=141  Identities=14%  Similarity=0.089  Sum_probs=76.4

Q ss_pred             CCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcC--cccCCCcccceEEEeeCcccc
Q 048438           14 TTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNA--HKWFFATLDCCCLWATNPEYL   91 (239)
Q Consensus        14 tt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~--hK~l~~P~g~g~l~~~~~~~l   91 (239)
                      +...|...|+++|.++|+++|++++-|+||+.|...-..    .-|- .-|+-++|+  .|.+.+.. .|+++++++++.
T Consensus       120 ~h~~G~~~d~~~i~~~~~~~~i~lIeD~a~a~g~~~~g~----~~G~-~gd~~~fSf~~~K~i~~ge-GG~v~~~~~~~~  193 (363)
T PF01041_consen  120 VHLFGNPADMDAIRAIARKHGIPLIEDAAQAFGARYKGR----PVGS-FGDIAIFSFHPTKIITTGE-GGAVVTNDPELA  193 (363)
T ss_dssp             E-GGGB---HHHHHHHHHHTT-EEEEE-TTTTT-EETTE----ETTS-SSSEEEEESSTTSSS-SSS--EEEEESTHHHH
T ss_pred             ecCCCCcccHHHHHHHHHHcCCcEEEccccccCceeCCE----eccC-CCCceEecCCCCCCCcCCC-CeeEEecHHHHH
Confidence            457888889999999999999999999999988643211    1121 246666665  48874443 467777665432


Q ss_pred             ccccc--CCCCcc-CCCCceec--CCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc
Q 048438           92 KNKAT--ESKPVV-DYKDWQIT--LSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF  160 (239)
Q Consensus        92 ~~~~~--~~~~~~-~~~~~~~~--~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~  160 (239)
                      .....  ..+... ....+...  .+-.++--.+-+++.....+.+.+++++..++++++.+.|+.++++....
T Consensus       194 ~~~~~~~~~g~~~~~~~~~~~~~~~g~n~rm~~~~AAigl~QL~~L~~~~~~R~~~a~~y~~~L~~~~~~~~~~  267 (363)
T PF01041_consen  194 ERARALRNHGRSRDAFRRYRHELPPGYNFRMSELQAAIGLAQLKRLDEIIARRRENAQRYREALAGIPGIKPPP  267 (363)
T ss_dssp             HHHHHHTBTTEETSECSTTEESSSS--B-B-BHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTGTTEEEEG
T ss_pred             HHhhhhhccCcCccccccccccccCCcccccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCccccc
Confidence            22210  000000 00111111  22222222222222222235677888888899999999999999987765

The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....

>PLN02656 tyrosine transaminase

Probab=98.44  E-value=9.3e-06  Score=71.43  Aligned_cols=201  Identities=10%  Similarity=0.051  Sum_probs=105.0

Q ss_pred             cEEEEEecCCCCcccc---cChhHHHHHHHHhCCEEEEecccccccccCcccccc--cCCCCCcceEEEcCcccCCCc-c
Q 048438            5 PLFLCATIGTTAITAV---DPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--IDGVEGADSFSLNAHKWFFAT-L   78 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i---~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~~~~~~~Ds~~~~~hK~l~~P-~   78 (239)
                      +.+|+.+..+|.||.+   +++++|+++|+++|+++++|.+++.....-......  +.... -=++..|+.|.++.| .
T Consensus       170 ~~~v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~-~vi~~~SfSK~f~~pGl  248 (409)
T PLN02656        170 TVALVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIV-PVLTLGSLSKRWIVPGW  248 (409)
T ss_pred             ceEEEEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhcccC-cEEEEcccchhccCcce
Confidence            4566777789999998   568899999999999999999987433211111110  11101 124567899985555 4


Q ss_pred             cceEEEeeCc-------ccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHh
Q 048438           79 DCCCLWATNP-------EYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVS  151 (239)
Q Consensus        79 g~g~l~~~~~-------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~  151 (239)
                      -+|+++..++       .++......    .+    ...+........+..+++....+-+++..++..+..+++.+.|+
T Consensus       249 RiG~~i~~~~~~~~~~~~~~~~~~~~----~~----~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~  320 (409)
T PLN02656        249 RLGWFVTTDPSGSFRDPKIVERIKKY----FD----ILGGPATFIQAAVPTILEQTDESFFKKTINILKQSSDICCDRIK  320 (409)
T ss_pred             eEEEEEEeCcccccccHHHHHHHHHH----Hh----hhcCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4777776321       222211100    00    00000011112222223321223455666666677788888998


Q ss_pred             CCCCeEEEcCCCeeE-EEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHH-HHHHHhcCcEEEEEEEECCEeEEEEE
Q 048438          152 GDKRFEVVFPCHFAV-VCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNREL-LESINASGKAYMTNVVLGGIYAIRFA  229 (239)
Q Consensus       152 ~~~g~~~~~~~~~~i-v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~l~~~g~~~~~~~~~~g~~~lR~~  229 (239)
                      +++++....+|+.++ +.++++.....             ...   +  ...+ .+.+.+.|..+.+........++|++
T Consensus       321 ~~~~~~~~~~p~gg~~~w~~l~~~~~~-------------~~~---~--~~~~~~~~l~~~gV~v~pg~~fg~~~~iRi~  382 (409)
T PLN02656        321 EIPCITCPHKPEGSMAVMVKLNLSLLE-------------DIS---D--DIDFCFKLAREESVIILPGTAVGLKNWLRIT  382 (409)
T ss_pred             hCCCCcCCcCCCeEEEEEEecchhhcC-------------CCC---C--HHHHHHHHHHhCCEEEecchhcCCCCeEEEE
Confidence            875544333454443 44454311000             000   0  0122 33445566666655555456799999


Q ss_pred             ecC
Q 048438          230 TGA  232 (239)
Q Consensus       230 ~~~  232 (239)
                      +..
T Consensus       383 ~~~  385 (409)
T PLN02656        383 FAA  385 (409)
T ss_pred             eCC
Confidence            885

>PRK09221 beta alanine--pyruvate transaminase; Provisional

Probab=98.44  E-value=1.1e-05  Score=71.75  Aligned_cols=203  Identities=14%  Similarity=0.140  Sum_probs=104.0

Q ss_pred             ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-c
Q 048438            4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-L   78 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~   78 (239)
                      .+.+|++--...+.|.+.|    +++|.++|++||+++++|.+|.+.--...-+.....++. .|.+++  -|.+++- .
T Consensus       218 ~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~~~~~~gv~-PDi~~~--gK~l~gG~~  294 (445)
T PRK09221        218 TIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAAFAAERFGVT-PDIITF--AKGLTNGAI  294 (445)
T ss_pred             cEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCchhhHHHhcCCC-CCEEEe--ccccccCcc
Confidence            3556777777778899999    999999999999999999998642111111000022443 787655  5776431 1


Q ss_pred             cceEEEeeCcccccccccCCCCccCC-CCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438           79 DCCCLWATNPEYLKNKATESKPVVDY-KDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE  157 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~  157 (239)
                      ..|.++.++ +..............+ ...++. +.+.......++|+.+..+   +..++..++.++|++.|+++.+..
T Consensus       295 Pi~av~~~~-~i~~~~~~~~~~~~~~~~~~T~~-~~pl~~aaa~a~L~~i~~~---~l~~~~~~~g~~l~~~l~~l~~~~  369 (445)
T PRK09221        295 PMGAVIASD-EIYDAFMQGPEYAIEFFHGYTYS-AHPVACAAGLATLDIYREE---DLFERAAELAPYFEDAVHSLKGLP  369 (445)
T ss_pred             cceeeEEcH-HHHHhhccCcccccccccccCCC-cCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHhhccCC
Confidence            245555543 3322111100000000 111211 2222222223445555333   345667799999999988763332


Q ss_pred             EEcCC-Cee-EEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCC
Q 048438          158 VVFPC-HFA-VVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLT  235 (239)
Q Consensus       158 ~~~~~-~~~-iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t  235 (239)
                      .+.+. ..+ +..+.+.+...              .+    .....++.+++.++|.+...     +...+|+++.-..|
T Consensus       370 ~v~~vrg~Gl~~~v~~~~~~~--------------~~----~~~~~~~~~~~~~~Gv~~~~-----~~~~lr~~Ppl~~t  426 (445)
T PRK09221        370 HVIDIRNIGLVAGIELAPRPG--------------AP----GARGYEAFMKCFEKGLLVRY-----TGDTIALSPPLIIE  426 (445)
T ss_pred             CEEEEecCceEEEEEEecccc--------------cc----cchHHHHHHHHHHCCeEEee-----cCCEEEEECCccCC
Confidence            22221 112 23344432110              00    11223566777778855432     23579999766555


Q ss_pred             Cc
Q 048438          236 EE  237 (239)
Q Consensus       236 ~~  237 (239)
                      ++
T Consensus       427 ~~  428 (445)
T PRK09221        427 KA  428 (445)
T ss_pred             HH
Confidence            54

>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=98.44  E-value=1.7e-06  Score=74.29  Aligned_cols=133  Identities=17%  Similarity=0.210  Sum_probs=93.3

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCC-CcceEEEcCcccCCCccc--ce
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVE-GADSFSLNAHKWFFATLD--CC   81 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~-~~Ds~~~~~hK~l~~P~g--~g   81 (239)
                      ..+|-.-.-+|.+..+-||++|+++||++|+.++||.+.+.+.. .+       .+. +||.++-|+.|++++...  .|
T Consensus       163 t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~~p~~-~~-------pL~lGADIV~hSaTKyi~Ghsdvi~G  234 (409)
T KOG0053|consen  163 TKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGSPYN-QD-------PLPLGADIVVHSATKYIGGHSDVIGG  234 (409)
T ss_pred             ceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCcCcccc-cC-------hhhcCCCEEEEeeeeeecCCcceeee
Confidence            45677778899999999999999999999999999999987733 22       122 499999999999988644  45


Q ss_pred             EEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438           82 CLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE  157 (239)
Q Consensus        82 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~  157 (239)
                      ++..+.+++..+...          .....+.-..++.+|..+|  |.+.+.-|++++.+.+..+.+.|.+.|.++
T Consensus       235 ~iv~n~~~~~~~l~~----------~~~~lg~~~~p~~~~ll~R--glktl~lRi~~~~ena~~~A~~Le~~~~v~  298 (409)
T KOG0053|consen  235 SVVLNSEELASRLKF----------LQEDLGWCEDPFDLFLLSR--GLKTLHLRINKHSENALKIALLLEAHPKVK  298 (409)
T ss_pred             EEecCcHHHHHHHHH----------HHHHhcCCCCHHHHHHHhc--CcchhhhhHHHHHHHHHHHHHHhhhCCcee
Confidence            555543444333211          0111222334566666555  445556677888888888888888877777

>PRK08068 transaminase; Reviewed

Probab=98.44  E-value=1.6e-05  Score=69.48  Aligned_cols=193  Identities=11%  Similarity=-0.022  Sum_probs=103.7

Q ss_pred             cEEEEEecCCCCcccccCh---hHHHHHHHHhCCEEEEecccccccccCcccccccC--CCCCcceEEEcCcccCCCc-c
Q 048438            5 PLFLCATIGTTAITAVDPL---KPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFID--GVEGADSFSLNAHKWFFAT-L   78 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl---~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~--~~~~~Ds~~~~~hK~l~~P-~   78 (239)
                      +-+|+.+.-+|.||.+.+.   ++|.++|++|++++++|.+++-....-........  +...-..++.++.|.++.| .
T Consensus       168 ~~~v~l~~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~g~~Gl  247 (389)
T PRK08068        168 AKLMYLNYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFNMAGW  247 (389)
T ss_pred             ceEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecchhccCCccc
Confidence            4456666678999998886   57777899999999999998642211000001111  1111346778999997544 2


Q ss_pred             cceEEEeeCcccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438           79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE  157 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~  157 (239)
                      -+|+++. +++.+.......      ..+.  .+.. ........++.. +.+-+++..++..+..+++.+.|++. |+.
T Consensus       248 RiG~~~~-~~~l~~~l~~~~------~~~~--~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~r~~~~~~L~~~-g~~  316 (389)
T PRK08068        248 RVAFAVG-NESVIEAINLLQ------DHLF--VSLFGAIQDAAIEALLS-DQSCVAELVARYESRRNAFISACREI-GWE  316 (389)
T ss_pred             eeEeEec-CHHHHHHHHHHH------hhcc--CCCChHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHC-CCc
Confidence            2666664 343333221100      0000  0100 001111112211 23445566666777788888899886 776


Q ss_pred             EEcCCCeeE-EEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhc-CcEEEEEEEE--CCEeEEEEEecC
Q 048438          158 VVFPCHFAV-VCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINAS-GKAYMTNVVL--GGIYAIRFATGA  232 (239)
Q Consensus       158 ~~~~~~~~i-v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~--~g~~~lR~~~~~  232 (239)
                      +. ++..+. +.+.+++..                +       ...+.+.|.++ |..+......  .+..++|+++..
T Consensus       317 ~~-~~~g~~~~~v~~~~~~----------------~-------~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~  371 (389)
T PRK08068        317 VD-APKGSFFAWMPVPKGY----------------T-------SEQFADLLLEKAHVAVAPGNGFGEHGEGYVRVGLLT  371 (389)
T ss_pred             cc-CCCeeEEEEEECCCCC----------------C-------HHHHHHHHHHhCCEEEecchHhCccCCCeEEEEEcC
Confidence            54 455544 556665421                0       12566677654 5554443322  235689999864

>PRK12414 putative aminotransferase; Provisional

Probab=98.43  E-value=8.5e-06  Score=71.03  Aligned_cols=194  Identities=12%  Similarity=0.103  Sum_probs=102.2

Q ss_pred             cEEEEEecCCCCcccc---cChhHHHHHHHHhCCEEEEecccccccccCcccccc--cCCCCCcceEEEcCcccCCCc-c
Q 048438            5 PLFLCATIGTTAITAV---DPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--IDGVEGADSFSLNAHKWFFAT-L   78 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i---~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~~~~~~~Ds~~~~~hK~l~~P-~   78 (239)
                      +-+|+++..+|.||.+   +++++|+++|++||+++++|.+|.-....-......  ...+..--+++.+++|.++.| .
T Consensus       163 ~~~v~i~~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGl  242 (384)
T PRK12414        163 TRMIIVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSYHVTGW  242 (384)
T ss_pred             cEEEEEcCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEecccccccCccc
Confidence            4566777888999997   568889999999999999999987432211111010  111111236788999987544 2


Q ss_pred             cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438           79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGM-ENLRHFLRSHVNMARLFERLVSGDKRFE  157 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-~g~~~~~~~~~~la~~l~~~l~~~~g~~  157 (239)
                      -+|+++.. ++.+......       .......   ...+...++...+.. ..+.+..+...+..+++.+.|++. |++
T Consensus       243 RiG~~v~~-~~l~~~l~~~-------~~~~~~~---~s~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~  310 (384)
T PRK12414        243 RVGYCLAP-AELMDEIRKV-------HQFMVFS---ADTPMQHAFAEALAEPASYLGLGAFYQRKRDLLARELAGS-RFE  310 (384)
T ss_pred             eEEEEecC-HHHHHHHHHH-------HhheecC---CCcHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhC-CCe
Confidence            35766653 3333222100       0000000   011222222222211 122334445567778888888886 777


Q ss_pred             EEcCCCeeEEEE-EEcCCCcchhhhhhhhcccccccHHHHHHHHHHHH-HHHHhcCcEEEEEEEE--CC--EeEEEEEec
Q 048438          158 VVFPCHFAVVCF-RVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELL-ESINASGKAYMTNVVL--GG--IYAIRFATG  231 (239)
Q Consensus       158 ~~~~~~~~iv~f-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~~g~~~~~~~~~--~g--~~~lR~~~~  231 (239)
                      +. ++..+...+ ++++...              .       ....+. +.|.+.|..++.....  .+  ..++|+++.
T Consensus       311 ~~-~~~gg~~~~~~~~~~~~--------------~-------~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRis~~  368 (384)
T PRK12414        311 LL-PSEGSFFMLARFRHFSD--------------E-------SDSDFVLRLIRDARVATIPLSAFYTDGTDTGLIRLSFS  368 (384)
T ss_pred             ec-CCCcceEEEEcccccCC--------------C-------CHHHHHHHHHHhCCEEEecchhhcCCCCCCCEEEEEec
Confidence            54 555555444 4443100              0       011233 3445566666554433  22  468999988


Q ss_pred             C
Q 048438          232 A  232 (239)
Q Consensus       232 ~  232 (239)
                      .
T Consensus       369 ~  369 (384)
T PRK12414        369 K  369 (384)
T ss_pred             C
Confidence            5

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=98.42  E-value=1.7e-05  Score=70.31  Aligned_cols=201  Identities=13%  Similarity=0.052  Sum_probs=106.3

Q ss_pred             ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc
Q 048438            4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD   79 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g   79 (239)
                      .+.+|++--...+.|.+-|    +++|.++|++||+++++|.+|++.......+.....++. .|.  .++.|.+++-..
T Consensus       207 ~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~~~~~~~~gv~-pDi--~t~sK~lg~G~p  283 (433)
T PRK08117        207 EVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEWFAAQTFGVV-PDI--MTIAKGIASGLP  283 (433)
T ss_pred             cEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCccccchhHhhcCCC-CCE--eehhhhccCCCc
Confidence            3556666666677889888    999999999999999999999852111110000012332 675  467899875344


Q ss_pred             ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC-CeEE
Q 048438           80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK-RFEV  158 (239)
Q Consensus        80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~-g~~~  158 (239)
                      .|++..+ +++.......      ....++ .+.+.......++++.+..+   +..++..++.+++++.|.++. ...+
T Consensus       284 igav~~~-~~i~~~~~~~------~~~~T~-~~np~~~aaa~a~L~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~  352 (433)
T PRK08117        284 LSAVVAS-KELMEQWPLG------SHGTTF-GGNPVACAAALATLEVIKEE---KLLDNANEMGAYALERLEVLKEKHPV  352 (433)
T ss_pred             ceeEEEc-HHHHhhccCC------CCCCCC-CcCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            6766654 3333222110      000111 12222223333445544333   344555677788888776541 1111


Q ss_pred             EcC-CCe-eEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCC
Q 048438          159 VFP-CHF-AVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTE  236 (239)
Q Consensus       159 ~~~-~~~-~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~  236 (239)
                      +.. +.. -++.+.+.++..              .+.   ......+.+.+.++|.++... . .+..++|+++....|+
T Consensus       353 ~~~vrg~Gl~~gi~~~~~~~--------------~~~---~~~~~~~~~~l~~~Gv~~~~~-g-~~~~~lRl~p~~~~t~  413 (433)
T PRK08117        353 IGDVRGIGLMIGIEIVDPDG--------------EPD---GDAVEKILDKCLEKGLLFYLC-G-NAGNVLRMIPPLTVTK  413 (433)
T ss_pred             eeeeecCCcEEEEEEecCCC--------------Ccc---hHHHHHHHHHHHHCCCEEeec-C-CCCCEEEEeCCccCCH
Confidence            111 112 234444433210              000   123346677788888765432 1 1246899997666655


Q ss_pred             c
Q 048438          237 E  237 (239)
Q Consensus       237 ~  237 (239)
                      +
T Consensus       414 ~  414 (433)
T PRK08117        414 E  414 (433)
T ss_pred             H
Confidence            4

>PRK08960 hypothetical protein; Provisional

Probab=98.41  E-value=8.1e-06  Score=71.19  Aligned_cols=194  Identities=11%  Similarity=0.020  Sum_probs=99.6

Q ss_pred             cEEEEEecCCCCcccccCh---hHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--
Q 048438            5 PLFLCATIGTTAITAVDPL---KPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--   79 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl---~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--   79 (239)
                      +.+++.+..+|.||.+.|.   ++|+++|++||+++++|.+|...... +.... ...+..--.+..|++|.++ ..|  
T Consensus       166 ~~~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~-~~~~~-~~~~~~~vi~~~S~SK~~g-~~GlR  242 (387)
T PRK08960        166 TVGALVASPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYG-VDAAS-VLEVDDDAFVLNSFSKYFG-MTGWR  242 (387)
T ss_pred             ceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccC-CCCCC-hhhccCCEEEEeecccccC-CcccE
Confidence            3456677789999998875   56777789999999999998643221 11111 1122212256779999875 335  


Q ss_pred             ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Q 048438           80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVV  159 (239)
Q Consensus        80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~  159 (239)
                      +|+++.. ++++......    ..  .+....+ .+........+..-..+-+.+..+...+..+.+.+.|++. |+.+.
T Consensus       243 iG~~~~~-~~~~~~~~~~----~~--~~~~~~s-~~~q~a~~~~l~~~~~~~l~~~~~~~~~~~~~l~~~L~~~-~~~~~  313 (387)
T PRK08960        243 LGWLVAP-PAAVPELEKL----AQ--NLYISAS-TPAQHAALACFEPETLAILEARRAEFARRRDFLLPALREL-GFGIA  313 (387)
T ss_pred             EEEEEcC-HHHHHHHHHH----Hh--hhccCCC-HHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHhc-CCcCC
Confidence            7777763 3443322110    00  0010001 1111111222221112233444445556677788888875 66543


Q ss_pred             cCC-CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHh-cCcEEEEEEEEC---CEeEEEEEecC
Q 048438          160 FPC-HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINA-SGKAYMTNVVLG---GIYAIRFATGA  232 (239)
Q Consensus       160 ~~~-~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~~---g~~~lR~~~~~  232 (239)
                      ..+ ....+.++++....                    +  ...+.+.|.+ .|..+.+.....   +..++|+++..
T Consensus       314 ~~p~g~~f~~~~~~~~~~--------------------~--~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~iRi~~~~  369 (387)
T PRK08960        314 VEPQGAFYLYADISAFGG--------------------D--AFAFCRHFLETEHVAFTPGLDFGRHQAGQHVRFAYTQ  369 (387)
T ss_pred             cCCCeeEEEEEeccccCC--------------------C--HHHHHHHHHHhCCEEEcCchHhCCCCCCCeEEEEecC
Confidence            333 33344444432110                    0  1245556554 455544333332   23589999885

>PRK08360 4-aminobutyrate aminotransferase; Provisional

Probab=98.40  E-value=3.2e-05  Score=68.73  Aligned_cols=202  Identities=15%  Similarity=0.066  Sum_probs=106.5

Q ss_pred             ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc
Q 048438            4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD   79 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g   79 (239)
                      .+.+|++.-..+.+|.+.|    +++|.++|++||+++++|.+|.+.......+.....++. .|.+++  .|.+++-..
T Consensus       204 ~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G~~~a~~~~~~~-pDiitl--sK~l~~G~p  280 (443)
T PRK08360        204 GVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKWFAIEHFGVE-PDIITL--GKPLGGGLP  280 (443)
T ss_pred             CeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCccchhhhhcCCC-CCEEEe--cccccCCce
Confidence            4566666666677888776    889999999999999999998753221111110112443 787765  899875344


Q ss_pred             ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC-CeEE
Q 048438           80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK-RFEV  158 (239)
Q Consensus        80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~-g~~~  158 (239)
                      .|++..+ ++........     . ...+. .+.+........+++.+..+   +..++..++.+++.+.|+++. ...+
T Consensus       281 igav~~~-~~i~~~~~~~-----~-~~~T~-~~~p~~~aaa~a~l~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~  349 (443)
T PRK08360        281 ISATIGR-AEIMDSLPPL-----A-HAFTL-SGNPVASAAALAVIEEIEEK---NLLKRAEKLGNYTKKRLEEMKKKHEL  349 (443)
T ss_pred             eEEEEEc-HHHHhhhcCC-----C-CCCCC-CcCHHHHHHHHHHHHHHHHc---CHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            6776654 3333222110     0 00111 11122223333445544333   344556677778877776531 1222


Q ss_pred             EcC--CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCC
Q 048438          159 VFP--CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTE  236 (239)
Q Consensus       159 ~~~--~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~  236 (239)
                      +..  ...-++.+.+.....            . ...  .......+.+++.++|.+...   . +...+|+++....|+
T Consensus       350 v~~vrg~Gl~~gie~~~~~~------------~-~~~--~~~~~~~~~~~l~~~Gi~~~~---~-~~~~lr~~P~l~~t~  410 (443)
T PRK08360        350 IGDVRGIGLMIGVDLVKDRE------------T-KER--AYEEAAKVVWRAWELGLIVTF---F-SGNVLRIQPPLTIEK  410 (443)
T ss_pred             eeeeeccceEEEEEEecCCc------------c-cCc--cHHHHHHHHHHHHHCCeEEee---c-CCCEEEEeCCCCCCH
Confidence            222  123355555532110            0 000  012234677778888865432   1 346899987776665


Q ss_pred             cC
Q 048438          237 ER  238 (239)
Q Consensus       237 ~~  238 (239)
                      +|
T Consensus       411 ~~  412 (443)
T PRK08360        411 EV  412 (443)
T ss_pred             HH
Confidence            43

>PRK05166 histidinol-phosphate aminotransferase; Provisional

Probab=98.40  E-value=7.8e-06  Score=70.93  Aligned_cols=189  Identities=13%  Similarity=0.065  Sum_probs=105.1

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHH--hCCEEEEecccccccccCccccc---ccCCCCCcceEEEcCcccCCCc-c
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQ--FGIWVHVDAAYAGSACIFPEFRH---FIDGVEGADSFSLNAHKWFFAT-L   78 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~--~gi~lhvD~A~~~~~~~~~~~~~---~~~~~~~~Ds~~~~~hK~l~~P-~   78 (239)
                      +-+|+.+..+|.||.+.|.+++.++++.  .++++++|.+++-... -.....   .+.....--++..++.|.++.| .
T Consensus       160 ~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~ii~De~y~~~~~-~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l~Gl  238 (371)
T PRK05166        160 PRMLMFSNPSNPVGSWLTADQLARVLDATPPETLIVVDEAYAEYAA-GDDYPSALTLLKARGLPWIVLRTFSKAYGLAGL  238 (371)
T ss_pred             CCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECcHHHhcC-CcCcccHHHHHhhcCCCEEEEeechHhhhcchh
Confidence            4466778889999999998888777764  4899999999864431 111111   1111110125678999997644 3


Q ss_pred             cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438           79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNY-GMENLRHFLRSHVNMARLFERLVSGDKRFE  157 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~g~~~~~~~~~~la~~l~~~l~~~~g~~  157 (239)
                      -+|++++.++..........      ..+.      ...+....++..+ ..+-+++..+...+..+++.+.|++. |+.
T Consensus       239 RiG~~i~~~~~l~~~~~~~~------~~~~------~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~  305 (371)
T PRK05166        239 RVGYGLVSDPELVGLLDRVR------TPFN------VNGAAQAAALAALDDEEHLAKGVALALAERERLKKELAEM-GYR  305 (371)
T ss_pred             heeeeecCCHHHHHHHHHhc------cCCC------CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-cCe
Confidence            36766654444332221100      0011      1112222222222 22345555666667778889999886 776


Q ss_pred             EEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCC
Q 048438          158 VVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGAT  233 (239)
Q Consensus       158 ~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~  233 (239)
                      + .++..+.+.++++..                         ...+.+.|.++|..+..........++|+++..+
T Consensus       306 ~-~p~~g~fl~~~~~~~-------------------------~~~l~~~l~~~gi~v~p~~~~~~~~~iRi~~~~~  355 (371)
T PRK05166        306 I-APSRANFLFFDARRP-------------------------ASAVAEALLRQGVIVKPWKQPGFETFIRVSIGSP  355 (371)
T ss_pred             e-CCCcCCEEEEeCCCC-------------------------HHHHHHHHHHCCeEEecCCCCCCCCeEEEEcCCH
Confidence            4 455555544443211                         1256667777765544433223367899998754

>PRK09148 aminotransferase; Validated

Probab=98.39  E-value=1.5e-05  Score=69.95  Aligned_cols=196  Identities=13%  Similarity=0.036  Sum_probs=103.7

Q ss_pred             ccEEEEEecCCCCcccccCh---hHHHHHHHHhCCEEEEecccccccccCcccccc--cCCCCCcceEEEcCcccCCCc-
Q 048438            4 IPLFLCATIGTTAITAVDPL---KPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--IDGVEGADSFSLNAHKWFFAT-   77 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl---~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~~~~~~~Ds~~~~~hK~l~~P-   77 (239)
                      .+.+|+.+.-+|.||.+.+.   ++|.++|++||+++++|.+|+.....-......  +.+.....+++.++.|.++.| 
T Consensus       165 ~~~~v~l~~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~~~pG  244 (405)
T PRK09148        165 KPIALIVNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFSMAG  244 (405)
T ss_pred             cceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCccCcEEEEeccccccCCcc
Confidence            35677778778999999886   678888999999999999987532211000000  111112335678999997645 


Q ss_pred             ccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 048438           78 LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNY--GMENLRHFLRSHVNMARLFERLVSGDKR  155 (239)
Q Consensus        78 ~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--g~~g~~~~~~~~~~la~~l~~~l~~~~g  155 (239)
                      .-+|+++. +++.+......    .+...+.      ...+....+...+  ..+-+++..+...+..+++.+.|++. +
T Consensus       245 lR~G~~v~-~~~~i~~l~~~----~~~~~~~------~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~r~~l~~~L~~~-~  312 (405)
T PRK09148        245 WRMGFAVG-NERLIAALTRV----KSYLDYG------AFTPIQVAATAALNGPQDCIAEMRELYKKRRDVLVESFGRA-G  312 (405)
T ss_pred             hheeeeeC-CHHHHHHHHHH----HHHhccC------CChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHc-C
Confidence            22677664 34443322110    0000001      0111111222222  22334455556667778888888875 7


Q ss_pred             eEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHH-hcCcEEEEEEEEC--CEeEEEEEec
Q 048438          156 FEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESIN-ASGKAYMTNVVLG--GIYAIRFATG  231 (239)
Q Consensus       156 ~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~--g~~~lR~~~~  231 (239)
                      +.+..+...+-+.+++++...               ..   +  ...+.+.|. +.|..........  +..++|+++.
T Consensus       313 ~~~~~p~~g~f~~~~l~~~~~---------------~~---~--~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ri~~~  371 (405)
T PRK09148        313 WDIPPPAASMFAWAPIPEAFR---------------HL---G--SLEFSKLLVEKADVAVAPGVGFGEHGDGYVRIALV  371 (405)
T ss_pred             CccCCCCeeEEEEEECCCccC---------------CC---C--HHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEec
Confidence            764433333345555543210               00   0  124555555 4555555443332  3468999975

>PRK08153 histidinol-phosphate aminotransferase; Provisional

Probab=98.39  E-value=1.8e-05  Score=68.71  Aligned_cols=189  Identities=11%  Similarity=0.053  Sum_probs=105.4

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHh--CCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcc-cce
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQF--GIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATL-DCC   81 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~--gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~-g~g   81 (239)
                      +-+|+.+...|.||.+.|.+++.++++.+  ++++++|.+++-.... ..... +.....--++..++.|.++.|. -+|
T Consensus       156 ~~~i~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~lI~DE~y~~~~~~-~~~~~-~~~~~~~~i~~~SfSK~~g~~GlRiG  233 (369)
T PRK08153        156 APLVYLANPDNPMGSWHPAADIVAFIEALPETTLLVLDEAYCETAPA-GAAPP-IDTDDPNVIRMRTFSKAYGLAGARVG  233 (369)
T ss_pred             CcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhhhcCc-ccchh-hhhcCCCEEEEecchHhccCcchhee
Confidence            34566677889999999998888887654  8999999998643211 00100 1111112356779999987552 246


Q ss_pred             EEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc
Q 048438           82 CLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYG-MENLRHFLRSHVNMARLFERLVSGDKRFEVVF  160 (239)
Q Consensus        82 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~  160 (239)
                      .++. .++.+.......      ..+.      ...+....+...+. .+-+++..+...+..+++.+.|++. |+.+. 
T Consensus       234 ~~v~-~~~~~~~l~~~~------~~~~------~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~L~~~-g~~~~-  298 (369)
T PRK08153        234 YAIG-APGTIKAFDKVR------NHFG------MNRIAQAAALAALKDQAYLAEVVGKIAAARDRIAAIARAN-GLTPL-  298 (369)
T ss_pred             eeec-CHHHHHHHHHhh------cCCC------CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCccC-
Confidence            6654 333333221100      0011      11223333333332 2234445555667777788888875 77643 


Q ss_pred             CCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecC
Q 048438          161 PCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGA  232 (239)
Q Consensus       161 ~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~  232 (239)
                      +...+.+.+.++..                      ......+.++|.++|..+..+....+..++|+++..
T Consensus       299 p~~~~f~~~~~~~~----------------------~~~a~~l~~~l~~~Gi~v~~p~~~~~~~~iRis~~~  348 (369)
T PRK08153        299 PSATNFVAIDCGRD----------------------GAFARAVLDGLIARDIFVRMPGVAPLDRCIRVSCGP  348 (369)
T ss_pred             CCcCcEEEEECCCC----------------------cccHHHHHHHHHHCCeEEeeCCCCCCCCeEEEecCC
Confidence            55666666655321                      123347777888787665333222345699999773

>PRK07337 aminotransferase; Validated

Probab=98.38  E-value=2e-05  Score=68.74  Aligned_cols=153  Identities=12%  Similarity=0.039  Sum_probs=82.4

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceE-EEcCcccCCCcc-c
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSF-SLNAHKWFFATL-D   79 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~-~~~~hK~l~~P~-g   79 (239)
                      +.+|+.+..+|.||.+.+   +++|+++|+++++++++|.++...... +.... ...+ ..+.+ +.+++|.++.|. -
T Consensus       164 ~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~-~~~~~-~~~~-~~~vi~~~S~SK~~~~~G~R  240 (388)
T PRK07337        164 TRGVLLASPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYD-AAPVS-ALSL-GDDVITINSFSKYFNMTGWR  240 (388)
T ss_pred             ceEEEEECCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEeccccccccC-CCCcC-hhhc-cCCEEEEEechhhcCCchhh
Confidence            345666778999999776   688889999999999999998643221 11111 1112 13454 559999976442 2


Q ss_pred             ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhC---HHHHHHHHHHHHHHHHHHHHHHhCCCCe
Q 048438           80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYG---MENLRHFLRSHVNMARLFERLVSGDKRF  156 (239)
Q Consensus        80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g---~~g~~~~~~~~~~la~~l~~~l~~~~g~  156 (239)
                      +|+++.. +..+.......      ..+..    ....+...++...+.   .+.+.+..++..+..+++.+.|++. ++
T Consensus       241 iG~~~~~-~~l~~~l~~~~------~~~~~----~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~-~~  308 (388)
T PRK07337        241 LGWLVVP-EALVGTFEKLA------QNLFI----CASALAQHAALACFEPDTLAIYERRRAEFKRRRDFIVPALESL-GF  308 (388)
T ss_pred             eeeeecC-HHHHHHHHHHH------HHhcc----CCChHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHhc-CC
Confidence            7777763 23222211000      00000    011122222222221   2334455555667777888888885 66


Q ss_pred             EEE-cCCCeeEEEEEEc
Q 048438          157 EVV-FPCHFAVVCFRVS  172 (239)
Q Consensus       157 ~~~-~~~~~~iv~f~~~  172 (239)
                      .+. .|...+-+.++++
T Consensus       309 ~~~~~p~~g~f~~~~~~  325 (388)
T PRK07337        309 KVPVMPDGAFYVYADCR  325 (388)
T ss_pred             ccccCCCeeEEEEEecc
Confidence            543 3333445555654

>PRK06836 aspartate aminotransferase; Provisional

Probab=98.37  E-value=3e-05  Score=67.86  Aligned_cols=81  Identities=11%  Similarity=-0.003  Sum_probs=53.4

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHH------hCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCC
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQ------FGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFF   75 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~------~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~   75 (239)
                      +-+|++++.+|.+|.+.|   +++|+++|++      ||+++++|.++.................+ -..+..+++|.++
T Consensus       169 ~~~v~~~~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~i~~~S~SK~~~  247 (394)
T PRK06836        169 TKAVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYIFKYYD-NSIVVYSFSKSLS  247 (394)
T ss_pred             ceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCCChHHccC-cEEEEecchhhcc
Confidence            446667788999999887   5667777888      89999999998643221101111111122 3577889999987


Q ss_pred             Cc-ccceEEEee
Q 048438           76 AT-LDCCCLWAT   86 (239)
Q Consensus        76 ~P-~g~g~l~~~   86 (239)
                      .| ..+|+++..
T Consensus       248 ~pGlRiG~~~~~  259 (394)
T PRK06836        248 LPGERIGYIAVN  259 (394)
T ss_pred             CcceeeEEEecC
Confidence            44 357777763

>PRK06107 aspartate aminotransferase; Provisional

Probab=98.37  E-value=2e-05  Score=69.12  Aligned_cols=205  Identities=11%  Similarity=-0.006  Sum_probs=102.2

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHh-CCEEEEeccccccccc---CcccccccCCCCCcceEEEcCcccCCCc
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQF-GIWVHVDAAYAGSACI---FPEFRHFIDGVEGADSFSLNAHKWFFAT   77 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~-gi~lhvD~A~~~~~~~---~~~~~~~~~~~~~~Ds~~~~~hK~l~~P   77 (239)
                      +-+|+++..+|.||.+.+   +++|+++|+++ ++++++|.+++-....   .+.......++..--.+..+++|.++.|
T Consensus       167 ~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~p  246 (402)
T PRK06107        167 TRWLILNAPSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYAMT  246 (402)
T ss_pred             ceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchhhcCc
Confidence            446667778899998876   56778888998 9999999998632211   1111111111111234566889997544


Q ss_pred             c-cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 048438           78 L-DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNY--GMENLRHFLRSHVNMARLFERLVSGDK  154 (239)
Q Consensus        78 ~-g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--g~~g~~~~~~~~~~la~~l~~~l~~~~  154 (239)
                      . -+|+++. +++.+......    .+.      .+.....+....+...+  +..-+++..+...+..+.+.+.|++++
T Consensus       247 GlRiG~~~~-~~~~~~~~~~~----~~~------~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~  315 (402)
T PRK06107        247 GWRIGYAAG-PADLIAAINKL----QSQ------SSSCPSSISQAAAAAALNGDQSFVTESVAVYKQRRDYALALLNAIP  315 (402)
T ss_pred             ccceeeeec-CHHHHHHHHHH----HHh------cccCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            2 2576664 33333222110    000      00011112222222222  233345555566677788888998877


Q ss_pred             CeEEEcCCCeeEEE-EEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHH-hcCcEEEEEEEECCEeEEEEEecC
Q 048438          155 RFEVVFPCHFAVVC-FRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESIN-ASGKAYMTNVVLGGIYAIRFATGA  232 (239)
Q Consensus       155 g~~~~~~~~~~iv~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~g~~~lR~~~~~  232 (239)
                      |+++. +++.+... ++++.....      ..    +....  ......+.+.+. +.|..+.+........++|+++..
T Consensus       316 g~~~~-~p~gg~~~~~~~~~~~~~------~~----~~~~~--~~~~~~~~~~l~~~~gv~v~pg~~Fg~~~~iRis~~~  382 (402)
T PRK06107        316 GLSCL-VPDGAFYLYVNCAGLIGK------TT----PEGKV--LETDQDVVLYLLDSAGVAVVQGTAYGLSPYFRLSIAT  382 (402)
T ss_pred             CCccc-CCCcceEEeeeccccccc------cc----ccccC--CCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEeCC
Confidence            77764 44445433 333210000      00    00000  000113444443 456666655444334689999886


Q ss_pred             C
Q 048438          233 T  233 (239)
Q Consensus       233 ~  233 (239)
                      +
T Consensus       383 ~  383 (402)
T PRK06107        383 S  383 (402)
T ss_pred             C
Confidence            3

>PLN02187 rooty/superroot1

Probab=98.36  E-value=2.8e-05  Score=69.56  Aligned_cols=204  Identities=10%  Similarity=0.033  Sum_probs=106.0

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCC-Ccc-eEEEcCcccCCCc-c
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVE-GAD-SFSLNAHKWFFAT-L   78 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~-~~D-s~~~~~hK~l~~P-~   78 (239)
                      +.+|+.+.-+|.||.+.+   +++|+++|++||+++++|.+|+-....-..... +..+. ... ++..++.|.++.| .
T Consensus       205 ~~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s-~~~~~~~~~vi~l~SfSK~f~~pGl  283 (462)
T PLN02187        205 TVAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVS-MGKFASIVPVLTLAGISKGWVVPGW  283 (462)
T ss_pred             cEEEEEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcee-HHHhccCCcEEEEecchhhcCCccc
Confidence            456777777899999877   788899999999999999998753321111101 11111 112 3456999996655 3


Q ss_pred             cceEEEeeCcccc----cccccCCCCccCCCCceecCC-CCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC
Q 048438           79 DCCCLWATNPEYL----KNKATESKPVVDYKDWQITLS-RSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD  153 (239)
Q Consensus        79 g~g~l~~~~~~~l----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~  153 (239)
                      -+|+++..++..+    ......    .  ..+....+ ..+....+..+++.-..+-+++..+...+..+++.+.|+++
T Consensus       284 RiG~~v~~~p~~~~~~~~~~~~~----~--~~~~~~~~~s~~~Q~a~~~~L~~~~~~~l~~~~~~l~~~r~~l~~~L~~~  357 (462)
T PLN02187        284 KIGWIALNDPEGVFETTKVLQSI----K--QNLDVTPDPATIIQAALPAILEKADKNFFAKKNKILKHNVDLVCDRLKDI  357 (462)
T ss_pred             eeEEEEecCchhHHHHHHHHHHH----H--HhccccCCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            3677766443211    111000    0  00011000 01111222222332123445666666777788899999887


Q ss_pred             CCeEEEcCCC-eeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHH-HHhcCcEEEEEEEECCEeEEEEEec
Q 048438          154 KRFEVVFPCH-FAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLES-INASGKAYMTNVVLGGIYAIRFATG  231 (239)
Q Consensus       154 ~g~~~~~~~~-~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~g~~~~~~~~~~g~~~lR~~~~  231 (239)
                      +++.....|+ .+-+.++++.....           ...+       ...+..+ +.++|.++.+........++|+++.
T Consensus       358 ~~~~~~~~P~gg~fl~~~l~~~~~~-----------~~~~-------~~~~~~~ll~~~gV~v~pG~~fg~~~~iRis~~  419 (462)
T PLN02187        358 PCVVCPKKPESCTYLLTKLELSLMD-----------NIKD-------DIDFCVKLAREENLVFLPGDALGLKNWMRITIG  419 (462)
T ss_pred             CCCcCCCCCCEeEEEEeecChhhCC-----------CCCC-------HHHHHHHHHhhCCEEEECccccCCCCeEEEEeC
Confidence            5543333344 34444444321000           0000       1133333 3556666665555545679999987


Q ss_pred             CC
Q 048438          232 AT  233 (239)
Q Consensus       232 ~~  233 (239)
                      .+
T Consensus       420 ~~  421 (462)
T PLN02187        420 VE  421 (462)
T ss_pred             CC
Confidence            64

>PRK06058 4-aminobutyrate aminotransferase; Provisional

Probab=98.36  E-value=4.6e-05  Score=67.79  Aligned_cols=201  Identities=12%  Similarity=0.035  Sum_probs=105.9

Q ss_pred             cEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438            5 PLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC   80 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~   80 (239)
                      ..+|++--.....|.+-|    +++|.++|++||+.+++|..+.+.--....+.....++. .|.++++  |.+++-...
T Consensus       220 iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~~fa~~~~gv~-PDiv~~g--K~l~~G~Pi  296 (443)
T PRK06058        220 LAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWFACEHEGIV-PDLITTA--KGIAGGLPL  296 (443)
T ss_pred             eEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChhhhHHHhcCCC-CCEEEEc--ccccCCCcc
Confidence            445555554555566665    999999999999999999998754221111111123443 7998885  998765557


Q ss_pred             eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC-CeEEE
Q 048438           81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK-RFEVV  159 (239)
Q Consensus        81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~-g~~~~  159 (239)
                      |.++.++ +........      ....++ .+.+.......++|+.+..+   +..++..++.+++.++|+++. ...++
T Consensus       297 ~av~~~~-~i~~~~~~~------~~~~T~-~gnpl~~aaa~a~L~~~~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~i  365 (443)
T PRK06058        297 SAVTGRA-EIMDAPHPG------GLGGTY-GGNPVACAAALAAIETIEED---DLVARARQIEALMTDRLRALAAEDDRI  365 (443)
T ss_pred             EEEEEcH-HHHhhccCC------CCCCCC-CCCHHHHHHHHHHHHHHHHc---CHHHHHHHHHHHHHHHHHHHHhhCCcE
Confidence            7777643 333222110      000111 12222223333344444333   344555577888888886631 12222


Q ss_pred             cC--CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCCc
Q 048438          160 FP--CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTEE  237 (239)
Q Consensus       160 ~~--~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~  237 (239)
                      .+  ....++.+.+......            ..+    .++...+.+.+.++|.+.......  ..+||+.+.--.|++
T Consensus       366 ~~vrg~G~~~~i~~~~~~~~------------~~~----~~~~~~l~~~~~~~Gv~~~~~~~~--~~~lr~~Ppl~~t~~  427 (443)
T PRK06058        366 GDVRGRGAMIAIELVKPGTT------------EPD----AELTKALAAAAHAAGVIVLTCGTY--GNVIRLLPPLVIGDE  427 (443)
T ss_pred             EeeeccceEEEEEEecCCCC------------CCc----HHHHHHHHHHHHHCCeEEeccCCC--CCEEEEECCCccCHH
Confidence            22  2234555555332100            001    234457777888888665321111  258999866555543

>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional

Probab=98.36  E-value=3e-05  Score=70.29  Aligned_cols=197  Identities=9%  Similarity=0.008  Sum_probs=102.2

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEE-EcCcccCCCc-cc
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFS-LNAHKWFFAT-LD   79 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~-~~~hK~l~~P-~g   79 (239)
                      +-+|+++.-+|.||.+.+   +++|+++|++|++++++|.+|.-.............-....-.++ .++.|.++.| .-
T Consensus       282 ~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~~~~~~~vi~~~S~SK~~~~~G~R  361 (517)
T PRK13355        282 TKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIASLAPDLFCVTFSGLSKSHMIAGYR  361 (517)
T ss_pred             ceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHHhCCCCeEEEEecchhhccCcccc
Confidence            456777778999999988   888999999999999999998643221101111111001122333 5789986544 22


Q ss_pred             ceEEEeeC-ccc----ccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCH----HHHHHHHHHHHHHHHHHHHHH
Q 048438           80 CCCLWATN-PEY----LKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGM----ENLRHFLRSHVNMARLFERLV  150 (239)
Q Consensus        80 ~g~l~~~~-~~~----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~----~g~~~~~~~~~~la~~l~~~l  150 (239)
                      +|.+++.. ++.    .......     .    ....  .......+++...+..    +.+-+..++..+..+++.+.|
T Consensus       362 iG~~i~~~~~~~~~~~~~~l~~~-----~----~~~~--~~~~~~q~a~~~aL~~~~~~~~~~~~~~~~~~~r~~l~~~L  430 (517)
T PRK13355        362 IGWMILSGNKRIAKDYIEGLNML-----A----NMRL--CSNVPAQSIVQTALGGHQSVKDYLVPGGRVYEQRELVYNAL  430 (517)
T ss_pred             eEEEEeeCchhhHHHHHHHHHHH-----h----cCcC--CcChHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777532 221    1111000     0    0000  0111222222222211    111111233445568888999


Q ss_pred             hCCCCeEEEcCCCeeEEEE-EEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEEC--CEeEEE
Q 048438          151 SGDKRFEVVFPCHFAVVCF-RVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLG--GIYAIR  227 (239)
Q Consensus       151 ~~~~g~~~~~~~~~~iv~f-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~--g~~~lR  227 (239)
                      ++++|+++. +|+.+...| +++.....            ..+    +  ...+.+.|.++|..++......  +..++|
T Consensus       431 ~~~~g~~~~-~p~g~fy~~~~l~~~~~~------------~~~----~--~~~~~~ll~~~gV~v~pg~~F~~~~~~~~R  491 (517)
T PRK13355        431 NAIPGISAV-KPKAAFYIFPKIDVKKFN------------IHD----D--EQFALDLLHDKKVLIVQGTGFNWDKPDHFR  491 (517)
T ss_pred             hcCCCcccC-CCCeeeEEEeecCcccCC------------CCC----H--HHHHHHHHHhCCEEEeCcchhCCCCcCEEE
Confidence            888888765 566666555 55431000            000    0  0122334556676666555442  467999


Q ss_pred             EEec
Q 048438          228 FATG  231 (239)
Q Consensus       228 ~~~~  231 (239)
                      +++.
T Consensus       492 is~~  495 (517)
T PRK13355        492 VVYL  495 (517)
T ss_pred             EEeC
Confidence            9984

>PRK03321 putative aminotransferase; Provisional

Probab=98.34  E-value=8.9e-06  Score=69.96  Aligned_cols=184  Identities=13%  Similarity=0.074  Sum_probs=101.1

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHH--hCCEEEEecccccccccCcccccccCCC-CCcc-eEEEcCcccCCCcc-c
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQ--FGIWVHVDAAYAGSACIFPEFRHFIDGV-EGAD-SFSLNAHKWFFATL-D   79 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~--~gi~lhvD~A~~~~~~~~~~~~~~~~~~-~~~D-s~~~~~hK~l~~P~-g   79 (239)
                      +-+|+.+..++.+|.+.|.++|.++|++  +++++++|.+|+.....-. .......+ ..-+ .++.++.|.++.|. -
T Consensus       146 ~~~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~~vi~~~S~SK~~g~~GlR  224 (352)
T PRK03321        146 TRLIFVCNPNNPTGTVVTPAELARFLDAVPADVLVVLDEAYVEYVRDDD-VPDGLELVRDHPNVVVLRTFSKAYGLAGLR  224 (352)
T ss_pred             CCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEechHHHhccCcC-CCcHHHHHhhCCCEEEEecchHHhhhHHHh
Confidence            4466677888999999999999999997  5999999999874432110 00001100 0123 34568999976441 2


Q ss_pred             ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 048438           80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNY-GMENLRHFLRSHVNMARLFERLVSGDKRFEV  158 (239)
Q Consensus        80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~  158 (239)
                      +|+++. +++.+.......      ..+      ....+....++..+ ..+.+.+..++..+..+++.+.|++. |+.+
T Consensus       225 iG~~v~-~~~~~~~~~~~~------~~~------~~s~~~q~~a~~~l~~~~~~~~~~~~~~~~r~~~~~~L~~~-~~~~  290 (352)
T PRK03321        225 VGYAVG-HPEVIAALRKVA------VPF------SVNSLAQAAAIASLAAEDELLERVDAVVAERDRVRAALRAA-GWTV  290 (352)
T ss_pred             hhhhcC-CHHHHHHHHHhc------CCC------CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCcc
Confidence            566665 333333222100      001      11222222222222 23344455555556667788888875 7664


Q ss_pred             EcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCC
Q 048438          159 VFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGAT  233 (239)
Q Consensus       159 ~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~  233 (239)
                      . ++..+.+.++++..                         ...+.+.|.+.|.. +.+  . +...+|+++..+
T Consensus       291 ~-~~~g~~i~i~l~~~-------------------------~~~~~~~l~~~gI~-v~~--~-~~~~iRi~~~~~  335 (352)
T PRK03321        291 P-PSQANFVWLPLGER-------------------------TADFAAAAAEAGVV-VRP--F-AGEGVRVTIGAP  335 (352)
T ss_pred             C-CCCCCEEEEeCCCC-------------------------HHHHHHHHHHCCEE-EEc--c-CCCcEEEeeCCH
Confidence            3 34455555554221                         12566677666654 433  2 334699997643

>PRK06348 aspartate aminotransferase; Provisional

Probab=98.33  E-value=3.3e-05  Score=67.29  Aligned_cols=193  Identities=10%  Similarity=0.064  Sum_probs=100.9

Q ss_pred             EEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCccccc--ccCCCCCcceEEEcCcccCCCc-cc
Q 048438            6 LFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRH--FIDGVEGADSFSLNAHKWFFAT-LD   79 (239)
Q Consensus         6 ~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~--~~~~~~~~Ds~~~~~hK~l~~P-~g   79 (239)
                      -+|+++.-+|.||.+.+   +++|.++|+++++++++|.+++....... ...  .+.+...-.++..++.|.++.| .-
T Consensus       164 ~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~~vi~~~SfSK~~~l~GlR  242 (384)
T PRK06348        164 KAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYED-FVPMATLAGMPERTITFGSFSKDFAMTGWR  242 (384)
T ss_pred             cEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCCC-ccchhhcCCCcCcEEEEecchhccCCcccc
Confidence            34555667889999876   77888889999999999999875432111 111  0111112346677999998644 33


Q ss_pred             ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Q 048438           80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVV  159 (239)
Q Consensus        80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~  159 (239)
                      +|+++. .+.++......    .....+.   ........+..++.. ..+-+++..+...+..+++.+.|++++++++.
T Consensus       243 iG~~v~-~~~~~~~~~~~----~~~~~~~---~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~r~~~~~~~L~~~~~~~~~  313 (384)
T PRK06348        243 IGYVIA-PDYIIETAKII----NEGICFS---APTISQRAAIYALKH-RDTIVPLIKEEFQKRLEYAYKRIESIPNLSLH  313 (384)
T ss_pred             ceeeec-CHHHHHHHHHH----HHhccCC---CCHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHhcCCCceec
Confidence            676665 33333222100    0000011   011111111122221 12223344444556677888888887777654


Q ss_pred             cCCCeeEE-EEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHh-cCcEEEEEEEE--CCEeEEEEEec
Q 048438          160 FPCHFAVV-CFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINA-SGKAYMTNVVL--GGIYAIRFATG  231 (239)
Q Consensus       160 ~~~~~~iv-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~--~g~~~lR~~~~  231 (239)
                       +++.+.. .++++....               +       ...+.+.+.+ .|..+......  .+..++|+++.
T Consensus       314 -~p~gg~~~~~~~~~~~~---------------~-------~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~  366 (384)
T PRK06348        314 -PPKGSIYAFINIKKTGL---------------S-------SVEFCEKLLKEAHVLVIPGKAFGESGEGYIRLACT  366 (384)
T ss_pred             -cCCeeEEEEEecccCCC---------------C-------HHHHHHHHHHhCCEEEcCchhhccCCCCeEEEEec
Confidence             5555543 445542211               0       1145555544 45554433333  23579999975

>PRK15400 lysine decarboxylase CadA; Provisional

Probab=98.33  E-value=9.7e-07  Score=81.51  Aligned_cols=143  Identities=11%  Similarity=0.102  Sum_probs=90.5

Q ss_pred             CccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCccccc--ccCCCCCc---c--eEEEcCcccCC
Q 048438            3 LIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRH--FIDGVEGA---D--SFSLNAHKWFF   75 (239)
Q Consensus         3 ~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~--~~~~~~~~---D--s~~~~~hK~l~   75 (239)
                      ++|+.+++|.. |..|.+-++++|.++|+.++  +|||.||++...+.+.++.  -+.  .++   |  +++-|.||.|.
T Consensus       296 k~p~~~vit~p-TYdG~~yd~~~I~~~~~~~~--ilvDEAwgah~~F~p~~~~~sam~--~ga~~~~~i~vtQStHKtL~  370 (714)
T PRK15400        296 TWPVHAVITNS-TYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEGKCGMS--GGRVEGKVIYETQSTHKLLA  370 (714)
T ss_pred             cCccEEEEECC-CCccEecCHHHHHHHhCCCC--EEEEccchhhhccCcccCCcChhh--cCCCCCCceEEEEchhhccc
Confidence            35777766665 88999999999999999887  7999999987655554431  121  135   5  89999999999


Q ss_pred             CcccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHH----HHhCHHHHHHHHHHHHHHHHHHHHHHh
Q 048438           76 ATLDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVI----RNYGMENLRHFLRSHVNMARLFERLVS  151 (239)
Q Consensus        76 ~P~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~g~~g~~~~~~~~~~la~~l~~~l~  151 (239)
                      +...++.+.++..  +....      ++ ..+....++. .+..+.+++    +.+....-++.+++..+++..+++.|.
T Consensus       371 alTQaS~LHvkg~--vd~~~------~n-~a~~m~~STS-PsY~l~ASLD~a~~~m~~~~G~~l~~~~i~~a~~~R~~l~  440 (714)
T PRK15400        371 AFSQASMIHVKGD--VNEET------FN-EAYMMHTTTS-PHYGIVASTETAAAMMKGNAGKRLINGSIERAIKFRKEIK  440 (714)
T ss_pred             chhHHhHHHHcCC--CCHHH------HH-HHHHHHcCCC-cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence            9888888877541  22110      00 0011111111 123333332    222211224566777788888999998


Q ss_pred             CCCC------eEEEc
Q 048438          152 GDKR------FEVVF  160 (239)
Q Consensus       152 ~~~g------~~~~~  160 (239)
                      ++++      |+++.
T Consensus       441 ~~~~~~~~w~~~~~~  455 (714)
T PRK15400        441 RLRTESDGWFFDVWQ  455 (714)
T ss_pred             hCCCcccCceEEecC
Confidence            8877      77764

>PRK15399 lysine decarboxylase LdcC; Provisional

Probab=98.33  E-value=3.7e-06  Score=77.76  Aligned_cols=144  Identities=13%  Similarity=0.101  Sum_probs=88.8

Q ss_pred             CccEEEEEecCCCCcccccChhHHHHHHHHhCCEE-EEecccccccccCccccc--ccCCCCCcceE---EEcCcccCCC
Q 048438            3 LIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWV-HVDAAYAGSACIFPEFRH--FIDGVEGADSF---SLNAHKWFFA   76 (239)
Q Consensus         3 ~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~l-hvD~A~~~~~~~~~~~~~--~~~~~~~~Ds~---~~~~hK~l~~   76 (239)
                      ++|..+++|.. |..|.+-++++|+++|   |+.+ |||.||++...+.+.++.  .+.+..++|..   +-|.||.|.+
T Consensus       296 ~~p~~vvit~p-TYdGi~yd~~~I~~~~---g~~~ilvDEAhgah~~F~p~~~~~sam~~~~~aD~~i~~tQStHKtL~a  371 (713)
T PRK15399        296 QWPVHAVITNS-TYDGLLYNTDWIKQTL---DVPSIHFDSAWVPYTHFHPIYQGKSGMSGERVPGKVIFETQSTHKMLAA  371 (713)
T ss_pred             CCceEEEEECC-CCCceeeCHHHHHHHh---CCCEEEEeccchhhhhcCcccCCcChhhCCCCCCeeeeeeeehhccccc
Confidence            46778777665 7899999999999999   7776 899999987654443331  12221246777   9999999999


Q ss_pred             cccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHH----HHhCHHHHHHHHHHHHHHHHHHHHHHhC
Q 048438           77 TLDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVI----RNYGMENLRHFLRSHVNMARLFERLVSG  152 (239)
Q Consensus        77 P~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~g~~g~~~~~~~~~~la~~l~~~l~~  152 (239)
                      -..++.+.++..  +....-      + ..+....++ ..+..+.+++    +.+....-++.+++..+++..+++.|.+
T Consensus       372 lTQaS~iHvk~~--vd~~~~------n-~a~~m~~ST-SPsY~LmASLD~a~~~m~~~~G~~l~~~~i~~a~~fR~~l~~  441 (713)
T PRK15399        372 FSQASLIHIKGE--YDEETF------N-EAFMMHTST-SPSYPIVASVETAAAMLRGNPGKRLINRSVERALHFRKEVQR  441 (713)
T ss_pred             cchheeeeecCC--CCHHHH------H-HHHHHHcCC-CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Confidence            999999998642  221100      0 000111111 1123333332    2222112245667777888888988887


Q ss_pred             CCC------eEEEc
Q 048438          153 DKR------FEVVF  160 (239)
Q Consensus       153 ~~g------~~~~~  160 (239)
                      +.+      |+++.
T Consensus       442 ~~~~~~~w~f~~~~  455 (713)
T PRK15399        442 LREESDGWFFDIWQ  455 (713)
T ss_pred             ccccccCceeeecC
Confidence            766      66664

>PRK15481 transcriptional regulatory protein PtsJ; Provisional

Probab=98.32  E-value=1.7e-05  Score=70.27  Aligned_cols=188  Identities=9%  Similarity=0.000  Sum_probs=103.3

Q ss_pred             EEEEe-cCCCCcccccChh---HHHHHHHHh-CCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-ccc
Q 048438            7 FLCAT-IGTTAITAVDPLK---PLCDVAKQF-GIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-LDC   80 (239)
Q Consensus         7 ~vv~t-~gtt~~G~i~pl~---~i~~i~~~~-gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~   80 (239)
                      +++.+ .-+|.||.+.+.+   +|.++|+++ ++|+++|.+++-...  +.....+.....--++..++.|.++ | .-+
T Consensus       214 ~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~--~~~~~~~~~~~~~vi~~~SfSK~~~-~GlRi  290 (431)
T PRK15481        214 AVILTPRAHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHFALLSS--SPYHSVIPQTTQRWALIRSVSKALG-PDLRL  290 (431)
T ss_pred             EEEECCCCCCCCCccCCHHHHHHHHHHHHhcCCceEEecCchhhhcc--CCCCCCCcCCCCCEEEEeeeccccC-CCcee
Confidence            44444 7789999999976   899999999 999999999864321  1111111111112367789999987 5 335


Q ss_pred             eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHh--CH--HHHHHHHHHHHHHHHHHHHHHhCCCCe
Q 048438           81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNY--GM--ENLRHFLRSHVNMARLFERLVSGDKRF  156 (239)
Q Consensus        81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--g~--~g~~~~~~~~~~la~~l~~~l~~~~g~  156 (239)
                      |+++. .+..+......    ....  ..    ....+...++...+  +.  +-+++..+...+..+++.+.|++. ++
T Consensus       291 G~~i~-~~~~~~~~~~~----~~~~--~~----~~s~~~q~a~~~~l~~~~~~~~l~~~~~~~~~~r~~~~~~L~~~-~~  358 (431)
T PRK15481        291 AFVAS-DSATSARLRLR----LNSG--TQ----WVSHLLQDLVYACLTDPEYQARLAQARLFYAQRRQKLARALQQY-GI  358 (431)
T ss_pred             EEEeC-CHHHHHHHHHH----Hhcc--cc----CCCHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHc-CC
Confidence            65543 33332222100    0000  00    01112222222222  21  123445555667777788888875 77


Q ss_pred             EEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEEC---CEeEEEEEecCC
Q 048438          157 EVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLG---GIYAIRFATGAT  233 (239)
Q Consensus       157 ~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~---g~~~lR~~~~~~  233 (239)
                      ++..|...+-+.++++..                         ...+.+.|.++|..+.....+.   +..++|+++...
T Consensus       359 ~~~~p~gg~f~~~~l~~~-------------------------~~~~~~~l~~~gV~v~pg~~f~~~~~~~~iRis~~~~  413 (431)
T PRK15481        359 AIPSPGDGLNLWLPLDTD-------------------------SQATALTLAKSGWLVREGEAFGVSAPSHGLRITLSTL  413 (431)
T ss_pred             ccccCCCeEEEEEECCCC-------------------------HHHHHHHHHHCCcEEecCCccccCCCCCeEEEEcCCC
Confidence            655555566666665431                         1145556666777666544331   235899998875


Q ss_pred             C
Q 048438          234 L  234 (239)
Q Consensus       234 ~  234 (239)
                      .
T Consensus       414 ~  414 (431)
T PRK15481        414 N  414 (431)
T ss_pred             C
Confidence            4

>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type

Probab=98.31  E-value=5.9e-05  Score=66.63  Aligned_cols=196  Identities=16%  Similarity=0.058  Sum_probs=100.9

Q ss_pred             ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc
Q 048438            4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD   79 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g   79 (239)
                      ...+|++--.....|.+.|    +++|.++|++||+++++|..+.+......-+.....++ ..|.++  +.|.+++-..
T Consensus       197 ~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g~~~a~~~~~~-~pDi~~--lsK~l~~G~p  273 (420)
T TIGR00700       197 NVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGAMFACEHEGP-EPDLIT--TAKSLADGLP  273 (420)
T ss_pred             cEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccchhHHHhhcCC-CCCEEE--eeccccCCcc
Confidence            3456666666666788777    89999999999999999999875422111000001233 378665  6899875455


Q ss_pred             ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhC----CCC
Q 048438           80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSG----DKR  155 (239)
Q Consensus        80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~----~~g  155 (239)
                      .|.++.+ +++.......      ....++ .+.+.......++++.+..+.+.++   ..++.+++.+.|++    .+.
T Consensus       274 ig~v~~~-~~i~~~~~~~------~~~~T~-~~~pl~~aaa~a~l~~l~~~~~~~~---~~~~g~~l~~~L~~l~~~~~~  342 (420)
T TIGR00700       274 LSGVTGR-AEIMDAPAPG------GLGGTY-AGNPLACAAALAVLAIIESEGLIER---ARQIGRLVTDRLTTLKAVDPR  342 (420)
T ss_pred             eEEEEec-HHHHhhcCCC------CcCCCC-CcCHHHHHHHHHHHHHHHhccHHHH---HHHHHHHHHHHHHHHHhhCCC
Confidence            6777764 3333222110      000111 1112222222233554444444333   33555556555544    333


Q ss_pred             eEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecC
Q 048438          156 FEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGA  232 (239)
Q Consensus       156 ~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~  232 (239)
                      +.-+. ..-.+..+.+.+...            . .+   ...+...+.+.+.++|.++.+....  ..++|+++..
T Consensus       343 ~~~vr-g~G~~~~i~~~~~~~------------~-~~---~~~~~~~l~~~~~~~Gv~i~p~~~f--~~~lRl~p~l  400 (420)
T TIGR00700       343 IGDVR-GLGAMIAVELVDPGT------------T-EP---DAGLAERIATAAHAAGLLLLTCGMF--GNIIRFLPPL  400 (420)
T ss_pred             EEEee-ccceEEEEEEecCCC------------C-Cc---cHHHHHHHHHHHHHCCeEEeccCCC--CCEEEEECCC
Confidence            33222 223455555532110            0 00   1244557777788888765542211  2689999643

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK07683 aminotransferase A; Validated

Probab=98.30  E-value=4.8e-05  Score=66.37  Aligned_cols=153  Identities=12%  Similarity=0.049  Sum_probs=83.6

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccC--CCCCcceEEEcCcccCCCc-c
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFID--GVEGADSFSLNAHKWFFAT-L   78 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~--~~~~~Ds~~~~~hK~l~~P-~   78 (239)
                      +-+|+++..+|.||.+.+   +++|+++|+++|+++++|.++......- .......  +...-..+..++.|.++.| .
T Consensus       162 ~~~i~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~~~~vi~~~s~SK~~~~pGl  240 (387)
T PRK07683        162 TRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQ-PHTSIAHFPEMREKTIVINGLSKSHSMTGW  240 (387)
T ss_pred             ceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCC-CcCChhhccCCcCCeEEEeeccccccCccc
Confidence            456677788899999755   8889999999999999999987543211 1111111  1112346788999998766 2


Q ss_pred             cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 048438           79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEV  158 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~  158 (239)
                      -+|++.. .++++......       ..+...+...+....+...+. -+..-+++..++..+..+++.+.|.+. ++.+
T Consensus       241 RiG~i~~-~~~l~~~~~~~-------~~~~~~~~~~~~q~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~  310 (387)
T PRK07683        241 RIGFLFA-PSYLAKHILKV-------HQYNVTCASSISQYAALEALT-AGKDDAKMMRHQYKKRRDYVYNRLISM-GLDV  310 (387)
T ss_pred             eeEEEEc-CHHHHHHHHHH-------HHhccCCCChHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHHHHc-CCcc
Confidence            2566654 33333322110       001110100111111111222 133334455555667778888888875 6664


Q ss_pred             EcCCCeeEEEE
Q 048438          159 VFPCHFAVVCF  169 (239)
Q Consensus       159 ~~~~~~~iv~f  169 (239)
                      . +++.+...+
T Consensus       311 ~-~~~~~~~~~  320 (387)
T PRK07683        311 E-KPTGAFYLF  320 (387)
T ss_pred             c-CCCeeEEEE
Confidence            4 445554433

>TIGR03251 LAT_fam L-lysine 6-transaminase

Probab=98.29  E-value=7.2e-05  Score=66.31  Aligned_cols=193  Identities=13%  Similarity=0.056  Sum_probs=99.8

Q ss_pred             ccEEEEEecCCCCccccc----ChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc
Q 048438            4 IPLFLCATIGTTAITAVD----PLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD   79 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~----pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g   79 (239)
                      .+.+|++.-.....|.+-    .+++|.++|++||+.+++|.+|.+.-....-+.....++. .|.+++  -|.+  |. 
T Consensus       218 ~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~a~~~~gv~-PDi~~~--gK~~--~~-  291 (431)
T TIGR03251       218 DIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVQ-PDIVAF--GKKT--QV-  291 (431)
T ss_pred             cEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCccchHHHHHhcCCC-CCEEEe--cccC--cc-
Confidence            456777776666677753    5899999999999999999998853222111110123443 999986  4554  32 


Q ss_pred             ceEEEeeCc--ccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC-CCe
Q 048438           80 CCCLWATNP--EYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD-KRF  156 (239)
Q Consensus        80 ~g~l~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~-~g~  156 (239)
                      +|++ .++.  +........    .+....++ .+.+.......++++.+..+++   .++..++.+++.+.|+++ ...
T Consensus       292 ~g~~-~~~~i~~~~~~~~~~----~~~~~~T~-~gnpl~~aaa~a~L~~l~~~~l---~~~~~~~g~~l~~~L~~l~~~~  362 (431)
T TIGR03251       292 CGIM-AGRRVDEVADNVFAV----PSRLNSTW-GGNLVDMVRATRILEIIEEERL---VDNARVQGAHLLARLHELAAEF  362 (431)
T ss_pred             ceEE-ecchHHHhhhhcccC----ccccCCCC-CCCHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHHHHHhC
Confidence            3444 3322  111100000    00000111 1222222233344555433333   334446666666666542 011


Q ss_pred             E-EEcCC--CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCC
Q 048438          157 E-VVFPC--HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGAT  233 (239)
Q Consensus       157 ~-~~~~~--~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~  233 (239)
                      . ++.+.  ...++.+.+++                       ......+.+.|.++|.+...    .+...+|+++.-.
T Consensus       363 ~~~i~~vrg~G~~~~i~~~~-----------------------~~~~~~~~~~l~~~Gvl~~~----~g~~~lr~~P~l~  415 (431)
T TIGR03251       363 PHLVSNPRGRGLMCAFDLPS-----------------------TADRDEVIRQLYREGVLLLG----CGERSIRFRPPLT  415 (431)
T ss_pred             ccceecccccceeEEEEeCC-----------------------HHHHHHHHHHHHhCCeEEec----CCCCeEEEECCcc
Confidence            1 22222  23466777643                       12334677788877766432    2446799998877


Q ss_pred             CCCcC
Q 048438          234 LTEER  238 (239)
Q Consensus       234 ~t~~~  238 (239)
                      +|++|
T Consensus       416 ~t~~e  420 (431)
T TIGR03251       416 VTREE  420 (431)
T ss_pred             CCHHH
Confidence            77653

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.

>PRK08593 4-aminobutyrate aminotransferase; Provisional

Probab=98.29  E-value=5.4e-05  Score=67.34  Aligned_cols=201  Identities=11%  Similarity=0.034  Sum_probs=104.8

Q ss_pred             cEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438            5 PLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC   80 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~   80 (239)
                      ..+|++--...+.|.+.|    +++|.++|++||+++++|.+|.+.--....+.....++. .|.++  .-|.+++-...
T Consensus       208 iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG~~~a~~~~gv~-pDi~t--~gK~l~~G~p~  284 (445)
T PRK08593        208 VACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWSSISHFNIT-PDLMS--FGKSLAGGMPM  284 (445)
T ss_pred             eEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchHHHHHhcCCC-CCEee--ecccccCCccc
Confidence            456666666666788877    999999999999999999998543111110000122443 78775  47887643346


Q ss_pred             eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC-CeEEE
Q 048438           81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK-RFEVV  159 (239)
Q Consensus        81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~-g~~~~  159 (239)
                      |++..+ +++.......  .    ..++. .+.+.......++++.+-.+   +..++..++.++|.+.|+++. ...++
T Consensus       285 gav~~~-~~i~~~~~~~--~----~~~T~-~~~pl~~aaa~a~l~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~v  353 (445)
T PRK08593        285 SAIVGR-KEIMESLEAP--A----HLFTT-GANPVSCAAALATIDMIEDE---SLLQRSAEKGEYARKRFDQWVSKYNFV  353 (445)
T ss_pred             EEEEEc-HHHHhhhccC--C----CCCCC-CCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHhcCCcE
Confidence            666664 3333322110  0    00111 12222223333445554333   345556677778887776531 11222


Q ss_pred             cCC-C-eeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCCc
Q 048438          160 FPC-H-FAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTEE  237 (239)
Q Consensus       160 ~~~-~-~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~  237 (239)
                      ... . --++.+.+.....          . ...+    ......+..++.++|.+...   . +...+|+++....|++
T Consensus       354 ~~vrG~Gl~~gi~l~~~~~----------~-~~~~----~~~~~~~~~~~~~~Gv~~~~---~-~~~~lr~~p~l~~t~~  414 (445)
T PRK08593        354 GDVRGYGLSIGIDIVSDKK----------L-KTRD----NEAALKICNYCFEHGVVIIA---V-AGNVLRFQPPLVITYE  414 (445)
T ss_pred             EEEeccceEEEEEEecCCC----------c-CCCc----HHHHHHHHHHHHHCCeEEec---c-CCCEEEEECCCccCHH
Confidence            221 1 1233344432100          0 0001    23345677788888865432   1 3368999988777765


Q ss_pred             C
Q 048438          238 R  238 (239)
Q Consensus       238 ~  238 (239)
                      |
T Consensus       415 ~  415 (445)
T PRK08593        415 Q  415 (445)
T ss_pred             H
Confidence            3

>PRK09105 putative aminotransferase; Provisional

Probab=98.28  E-value=2.3e-05  Score=68.07  Aligned_cols=181  Identities=11%  Similarity=0.038  Sum_probs=102.0

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHH--hCCEEEEecccccccccCcccccccCCCCCcceEEE-cCcccCCCccc--
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQ--FGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSL-NAHKWFFATLD--   79 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~--~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~-~~hK~l~~P~g--   79 (239)
                      +-+|+.+.-+|.||.+.+.++|.++++.  +++|+++|.+|.-.. ..+.... +.. ...+.+++ ++.|.++ ..|  
T Consensus       166 ~~~v~l~nP~NPTG~~~~~~~l~~l~~~~~~~~~lIvDEaY~~f~-~~~s~~~-~~~-~~~~vi~~~SfSK~~g-~~GlR  241 (370)
T PRK09105        166 AGLIYICNPNNPTGTVTPRADIEWLLANKPAGSVLLVDEAYIHFS-DAPSVVD-LVA-QRKDLIVLRTFSKLYG-MAGMR  241 (370)
T ss_pred             CCEEEEeCCCCCCCcCcCHHHHHHHHHhCCCCcEEEEECchHHhc-cCcchHH-HHh-hCCCEEEEecccHhhc-CCccc
Confidence            3456677789999999999999888764  489999999985321 1110000 111 12455554 7778864 445  


Q ss_pred             ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 048438           80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYG-MENLRHFLRSHVNMARLFERLVSGDKRFEV  158 (239)
Q Consensus        80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~g~~~~~~~~~~la~~l~~~l~~~~g~~~  158 (239)
                      +|+++. +++.+......     .  .+      .........+...+. .+-+++..++..+..+++.+.|++. |+++
T Consensus       242 iG~~v~-~~~~i~~l~~~-----~--~~------~~~~~~~~aa~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~  306 (370)
T PRK09105        242 LGLAAA-RPDLLAKLARF-----G--HN------PLPVPAAAAGLASLRDPKLVPQRRAENAAVREDTIAWLKKK-GYKC  306 (370)
T ss_pred             eeeeec-CHHHHHHHHhc-----C--CC------CcCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHC-CCCc
Confidence            777775 33333322110     0  00      011122222333232 2334555566778888899999885 7775


Q ss_pred             EcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEEC-CEeEEEEEecC
Q 048438          159 VFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLG-GIYAIRFATGA  232 (239)
Q Consensus       159 ~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~-g~~~lR~~~~~  232 (239)
                      . +++.+.+.+.++..                         ..++.+.|.++|.. +.. ... ...++|+++..
T Consensus       307 ~-~~~~~f~~~~~~~~-------------------------~~~l~~~L~~~gI~-v~~-~~~~~~~~~Ris~~~  353 (370)
T PRK09105        307 T-PSQANCFMVDVKRP-------------------------AKAVADAMAKQGVF-IGR-SWPIWPNWVRVTVGS  353 (370)
T ss_pred             C-CCCCcEEEEeCCCC-------------------------HHHHHHHHHHCCcE-Eec-CCCCCCCeEEEEcCC
Confidence            5 55666655544311                         12566677767554 321 122 25789999774

>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase

Probab=98.28  E-value=3.5e-05  Score=67.62  Aligned_cols=199  Identities=14%  Similarity=0.046  Sum_probs=103.4

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCC---cceEEEcCcccCCCc-
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEG---ADSFSLNAHKWFFAT-   77 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~---~Ds~~~~~hK~l~~P-   77 (239)
                      +-+|+++.-+|.||.+.+   +++|+++|++|++++++|.++.-.... +.....+..+..   .-+++.|+.|.++.| 
T Consensus       174 ~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~-~~~~~~~~~~~~~~~~vi~~~SfSK~~g~pG  252 (402)
T TIGR03542       174 IDIIYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISD-PSLPHSIFEIPGAKECAIEFRSFSKTAGFTG  252 (402)
T ss_pred             ceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccC-CCCCcchhhCCCCcccEEEEecCccccCCCC
Confidence            345666678899999888   788899999999999999998743211 100000111111   224577999987644 


Q ss_pred             ccceEEEeeCcccccccccC-CCCccCCCCceecCCCCCChHHHHHHHHHh---CHHHHHHHHHHHHHHHHHHHHHHhCC
Q 048438           78 LDCCCLWATNPEYLKNKATE-SKPVVDYKDWQITLSRSFRSLKLWFVIRNY---GMENLRHFLRSHVNMARLFERLVSGD  153 (239)
Q Consensus        78 ~g~g~l~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---g~~g~~~~~~~~~~la~~l~~~l~~~  153 (239)
                      .-+|+++.. ++++...... ............ .  ....+....+...+   ....+.+..+...+..+++.+.|++.
T Consensus       253 lRiG~~i~~-~~l~~~~~~~~~~~~~~~~~~~~-~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~  328 (402)
T TIGR03542       253 VRLGWTVVP-KELTYADGHSVIQDWERRQCTKF-N--GASYPVQRAAEAAYAGEGLQPILEAISYYMENARILRKALEAA  328 (402)
T ss_pred             cceEEEEec-HHHhhcchhhHHHHHHHHhhhcc-c--CCCHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHhc
Confidence            346766653 3333110000 000000000000 0  01111111112222   12233444455566677888888875


Q ss_pred             CCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhc-CcEEEEEEEE--CCEeEEEEEe
Q 048438          154 KRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINAS-GKAYMTNVVL--GGIYAIRFAT  230 (239)
Q Consensus       154 ~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~--~g~~~lR~~~  230 (239)
                       ++++..+...+-+.+++++.-                +       ...+.+.|.++ |.........  .+..++|+++
T Consensus       329 -~~~~~~~~~~~f~~v~l~~~~----------------~-------~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~  384 (402)
T TIGR03542       329 -GFKVYGGEHAPYLWVKTPEGI----------------S-------SWDFFDFLLYQYHVVGTPGSGFGPSGEGFVRFSA  384 (402)
T ss_pred             -CceecCCCceeEEEEECCCCC----------------C-------HHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEe
Confidence             777654445666777765421                0       11456666544 5554443332  2357899996


Q ss_pred             cC
Q 048438          231 GA  232 (239)
Q Consensus       231 ~~  232 (239)
                      ..
T Consensus       385 ~~  386 (402)
T TIGR03542       385 FG  386 (402)
T ss_pred             cC
Confidence            44

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).

>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional

Probab=98.28  E-value=6.5e-05  Score=66.10  Aligned_cols=208  Identities=10%  Similarity=0.031  Sum_probs=104.4

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCc--ceEEEcCcccCCCc-c
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGA--DSFSLNAHKWFFAT-L   78 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~--Ds~~~~~hK~l~~P-~   78 (239)
                      +.+++.+.-+|.||.+.+   +++|+++|++|++++++|.+|............ ...+...  =+++.++.|.++.| .
T Consensus       171 ~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~-~~~~~~~~~vi~~~SfSK~f~~pGl  249 (409)
T PLN00143        171 TIAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVP-MGLFASIVPVITLGSISKRWMIPGW  249 (409)
T ss_pred             CEEEEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcc-hhhhcccCcEEEEccchhhcCCCcc
Confidence            345566667899999888   777888899999999999998753321110000 1111111  14677999995554 4


Q ss_pred             cceEEEeeCcc-cccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438           79 DCCCLWATNPE-YLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE  157 (239)
Q Consensus        79 g~g~l~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~  157 (239)
                      -+|+++..++. .+....... ......... ..+.......+..++..-..+-+++..++..+..+++.+.|.++++..
T Consensus       250 RvG~~v~~~p~~~~~~~~~~~-~~~~~~~~~-~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~  327 (409)
T PLN00143        250 GLGWLVTCDPSGLLQICEIAD-SIKKALNPA-PFPPTFIQAAIPEILEKTTEDFFSKTINILRAALAFCYDKLKEIPCIM  327 (409)
T ss_pred             ceEEEEeeCchhhhhhHHHHH-HHHHHHhcc-CCCCchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            47777764332 211100000 000000000 000011111111222211233456666666677778888888765443


Q ss_pred             EEcCC-CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHH-HhcCcEEEEEEEECCEeEEEEEecCC
Q 048438          158 VVFPC-HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESI-NASGKAYMTNVVLGGIYAIRFATGAT  233 (239)
Q Consensus       158 ~~~~~-~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~g~~~~~~~~~~g~~~lR~~~~~~  233 (239)
                      ...+| ..+-+.++++....              ...    .....+...+ .++|..+..........++|+++..+
T Consensus       328 ~~~~p~gg~f~w~~l~~~~~--------------~~~----~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRi~~~~~  387 (409)
T PLN00143        328 CPQKAEGAFFALVKLNLLLL--------------EDI----EDDMEFCLKLAKEESLIILPGVTVGLKNWLRITFAVE  387 (409)
T ss_pred             CCCCCCeeEEEEEecchhhc--------------CCC----CCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEEcCC
Confidence            33334 34456666642100              000    0011333333 45666655555554567999998743

>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]

Probab=98.27  E-value=5.5e-05  Score=64.20  Aligned_cols=195  Identities=15%  Similarity=0.101  Sum_probs=121.2

Q ss_pred             EEEEEecCCCCcccc---cChhHHHHHHHHhCCEEEEecccccccccCcccccc--c-CCCCCcceEEEcCcccCCCc-c
Q 048438            6 LFLCATIGTTAITAV---DPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--I-DGVEGADSFSLNAHKWFFAT-L   78 (239)
Q Consensus         6 ~~vv~t~gtt~~G~i---~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~-~~~~~~Ds~~~~~hK~l~~P-~   78 (239)
                      -+++...-.|.+|.+   +.|.+|+++|++||+.++.|.-|+--.+....+-..  + .....--+.+.++.|.+..+ .
T Consensus       160 kl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFNlaGL  239 (388)
T COG1168         160 KLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKTFNLAGL  239 (388)
T ss_pred             cEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhhcChhhhcceEEEeeccccccchhh
Confidence            455667778899985   678999999999999999999987544432111110  1 11111234456779998654 2


Q ss_pred             cceEEEeeCccc----ccccccCCCCccCCCCceecCCCCCChHHHHHH--HHHhCHHHHHHHHHHHHHHHHHHHHHHhC
Q 048438           79 DCCCLWATNPEY----LKNKATESKPVVDYKDWQITLSRSFRSLKLWFV--IRNYGMENLRHFLRSHVNMARLFERLVSG  152 (239)
Q Consensus        79 g~g~l~~~~~~~----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~g~~g~~~~~~~~~~la~~l~~~l~~  152 (239)
                      .|+.+++.++.+    ++.....             ......++++.+.  .-..|.+-+.+..++...+.+++.+.+.+
T Consensus       240 ~~a~~Ii~n~~lr~~~~~~l~~~-------------~~~~~n~lg~~A~~aAY~~G~~WLd~L~~yl~~N~~~~~~~l~~  306 (388)
T COG1168         240 KCAYIIISNRELRAKFLKRLKRN-------------GLHGPSALGIIATEAAYNQGEPWLDELLEYLKDNRDYVADFLNK  306 (388)
T ss_pred             hheeEEecCHHHHHHHHHHHHHh-------------cCCCCchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            355566655433    2222110             0011223333332  22347777788888888999999999976


Q ss_pred             -CCCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEE---ECCEeEEEE
Q 048438          153 -DKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVV---LGGIYAIRF  228 (239)
Q Consensus       153 -~~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~---~~g~~~lR~  228 (239)
                       +|++++..|..+-++-..+...+..              +        .++.+.|.++.++.+....   ..|...+|+
T Consensus       307 ~~P~v~v~~p~gTYL~WLD~r~l~l~--------------d--------~~l~~~ll~~akVal~~G~~FG~~g~gf~Rl  364 (388)
T COG1168         307 HLPGVKVTEPQGTYLAWLDCRELGLD--------------D--------SELAEFLLEEAKVALSPGSTFGEEGSGFVRL  364 (388)
T ss_pred             hCCCcEEecCCCceeeeeeccccCCC--------------h--------HHHHHHHHHhhcEeccCCCccCcCCCceEEE
Confidence             5899999877777777777664421              0        2556667777777665533   346789998


Q ss_pred             EecCCCC
Q 048438          229 ATGATLT  235 (239)
Q Consensus       229 ~~~~~~t  235 (239)
                      -+..|..
T Consensus       365 N~acpr~  371 (388)
T COG1168         365 NFACPRA  371 (388)
T ss_pred             ecCCCHH
Confidence            8776653

>PRK04612 argD acetylornithine transaminase protein; Provisional

Probab=98.26  E-value=0.00011  Score=64.57  Aligned_cols=194  Identities=11%  Similarity=0.053  Sum_probs=101.4

Q ss_pred             cEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438            5 PLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC   80 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~   80 (239)
                      +.+|++.-.....|.+.|    +++|.++|++||+++++|.+|.+......-+.....++ ..|.++  +.|.+++-...
T Consensus       188 ~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~a~~~~~~-~pdi~t--~~K~l~~G~pi  264 (408)
T PRK04612        188 VAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTLFAHWQEQV-TPDIVT--LAKALGGGFPI  264 (408)
T ss_pred             EEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCchhhhhhcCC-CCCEEE--EcchhcCCCce
Confidence            445555544444445443    89999999999999999999875322111111111122 255554  57988653446


Q ss_pred             eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC-CeEEE
Q 048438           81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK-RFEVV  159 (239)
Q Consensus        81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~-g~~~~  159 (239)
                      |.++.++ +........      ....++ .+.+........+|+.+..   ++..++..++.+++.+.|+++. .+.++
T Consensus       265 ga~~~~~-~~~~~~~~~------~~~~t~-~~~p~~~aaa~a~L~~~~~---~~l~~~~~~~g~~l~~~l~~l~~~~~~i  333 (408)
T PRK04612        265 GAMLAGP-KVAETMQFG------AHGTTF-GGNPLAAAVARVALRKLAS---PQIAANVARQSAALRAGLEALNAEFGVF  333 (408)
T ss_pred             EEEEECH-HHHhhhcCC------CcCCCC-CCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhhCCCe
Confidence            6666543 322221110      000111 1222333333344554433   3455666788888888887641 12222


Q ss_pred             cC--CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCCc
Q 048438          160 FP--CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTEE  237 (239)
Q Consensus       160 ~~--~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~  237 (239)
                      ..  ...-++.+.+.+..                     .+....+.+.+.++|.+...    .|...+|+++.-..|++
T Consensus       334 ~~vrg~Gl~~~i~~~~~~---------------------~~~a~~i~~~l~~~Gvlv~~----~g~~~lRl~Ppl~it~e  388 (408)
T PRK04612        334 AQVRGRGLMLGAVLAPAH---------------------AGQAGAILDLAAEHGLLLLQ----AGPDVLRFVPALNLTDA  388 (408)
T ss_pred             eeeeccceEEEEEecCch---------------------hhHHHHHHHHHHHCCeEEee----CCCCEEEEcCCccCCHH
Confidence            22  12335555553211                     12234667778888866542    35578999976655543

>PRK08088 4-aminobutyrate aminotransferase; Validated

Probab=98.24  E-value=0.0001  Score=65.15  Aligned_cols=201  Identities=9%  Similarity=0.033  Sum_probs=100.7

Q ss_pred             ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccc-cCCCCCcceEEEcCcccCCCcc
Q 048438            4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF-IDGVEGADSFSLNAHKWFFATL   78 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~-~~~~~~~Ds~~~~~hK~l~~P~   78 (239)
                      .+.+|++.-...+.|.+-|    +++|.++|++||+++++|.+|++.... ..+... ..++ ..|  ..++.|.++.-.
T Consensus       199 ~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~-g~~~~~~~~~~-~pd--i~s~sK~l~~G~  274 (425)
T PRK08088        199 DIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRT-GTLFAMEQMGV-AAD--LTTFAKSIAGGF  274 (425)
T ss_pred             ceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcC-cchhHHhhcCC-CCC--EEEEeccccCCC
Confidence            3456666666666677766    999999999999999999998852111 111100 1222 256  456689987444


Q ss_pred             cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhC----CC
Q 048438           79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSG----DK  154 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~----~~  154 (239)
                      ..|.+... +++........      ...+.. +...........++.+..   ++.+++..++.+++.+.|.+    .|
T Consensus       275 rig~v~~~-~~~~~~~~~~~------~~~t~~-~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~l~~~~~  343 (425)
T PRK08088        275 PLAGVTGR-AEVMDAIAPGG------LGGTYA-GNPIACAAALAVLKVFEQ---ENLLQKANALGEKLKDGLLAIAEKHP  343 (425)
T ss_pred             cceeeEec-HHHHhhcCCCC------CCCCCC-cCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            46777663 33332221100      000111 111112222233443322   33444444555555555543    33


Q ss_pred             CeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCC
Q 048438          155 RFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATL  234 (239)
Q Consensus       155 g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~  234 (239)
                      .+.-+..+ -.++.+.+.....            ...+ +  ......+.+++.++|.++.+....  ...+|+++....
T Consensus       344 ~~~~v~g~-G~~~~l~l~~~~~------------~~~p-~--~~~~~~l~~~~~~~Gv~~~~~~~~--~~~iRl~~~~~~  405 (425)
T PRK08088        344 EIGDVRGL-GAMIAIELFEDGD------------HSKP-N--AKLTAQIVARARDKGLILLSCGPY--YNVLRILVPLTI  405 (425)
T ss_pred             CeEEEecc-ceEEEEEEecCCC------------CCCC-C--HHHHHHHHHHHHhCCCEEecCCCC--CCEEEEECCCCc
Confidence            33222222 3345666632110            0000 0  223457778888888765532111  367999986555


Q ss_pred             CCc
Q 048438          235 TEE  237 (239)
Q Consensus       235 t~~  237 (239)
                      |++
T Consensus       406 t~~  408 (425)
T PRK08088        406 EDA  408 (425)
T ss_pred             CHH
Confidence            543

>PRK07366 succinyldiaminopimelate transaminase; Validated

Probab=98.24  E-value=6.4e-05  Score=65.58  Aligned_cols=195  Identities=13%  Similarity=0.078  Sum_probs=102.3

Q ss_pred             cEEEEEecCCCCcccccCh---hHHHHHHHHhCCEEEEecccccccccCcccccccCCCC-C--cceEEEcCcccCCCc-
Q 048438            5 PLFLCATIGTTAITAVDPL---KPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVE-G--ADSFSLNAHKWFFAT-   77 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl---~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~-~--~Ds~~~~~hK~l~~P-   77 (239)
                      +-+|+.+.-+|.||.+.+.   ++|+++|++||+++++|.++.-....-......+..++ .  .-.++.++.|.++.| 
T Consensus       166 ~k~i~l~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~~G  245 (388)
T PRK07366        166 ARLMVLSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSYNMGG  245 (388)
T ss_pred             ceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeecccccCCcc
Confidence            4456666678999998775   56677899999999999998644321110000011111 1  124567999998654 


Q ss_pred             ccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 048438           78 LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNY--GMENLRHFLRSHVNMARLFERLVSGDKR  155 (239)
Q Consensus        78 ~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--g~~g~~~~~~~~~~la~~l~~~l~~~~g  155 (239)
                      .-+|.++. +++++....... ..     +..  +. ...+ ...++..+  ..+-+++..+...+..+++.+.|++. +
T Consensus       246 lRiG~~v~-~~~li~~l~~~~-~~-----~~~--~~-~~~~-~~~a~~~l~~~~~~l~~~~~~~~~~r~~l~~~L~~~-~  313 (388)
T PRK07366        246 FRIGFAIG-NAQLIQALRQVK-AV-----VDF--NQ-YRGI-LNGAIAALTGPQATVQQTVQIFRQRRDAFINALHQI-G  313 (388)
T ss_pred             hhheehcC-CHHHHHHHHHHH-hh-----ccc--CC-CHHH-HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC-C
Confidence            33666653 334433221100 00     000  00 0001 11111121  13344555666667778888888876 7


Q ss_pred             eEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHH-hcCcEEEEEEEEC--CEeEEEEEecC
Q 048438          156 FEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESIN-ASGKAYMTNVVLG--GIYAIRFATGA  232 (239)
Q Consensus       156 ~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~--g~~~lR~~~~~  232 (239)
                      +....+...+-+.+.+++...              .+       ...+.+.+. +.|..........  +..++|+++..
T Consensus       314 ~~~~~p~~g~f~~~~~~~~~~--------------~~-------~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~  372 (388)
T PRK07366        314 WPVPLPEATMYVWAKLPEPWQ--------------GN-------SVEFCTQLVAQTGVAASPGSGFGKSGEGYVRFALVH  372 (388)
T ss_pred             CcccCCCeeEEEEEECCcccC--------------CC-------HHHHHHHHHHhCCEEEeCchHhCcCCCCeEEEEecC
Confidence            765445455556666653200              00       124555554 3455555444332  34789999864

>KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.24  E-value=3.2e-05  Score=65.69  Aligned_cols=205  Identities=12%  Similarity=0.065  Sum_probs=124.6

Q ss_pred             EEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCccccc----ccCCCCCcceEEEcCcccCCCcccceE
Q 048438            7 FLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRH----FIDGVEGADSFSLNAHKWFFATLDCCC   82 (239)
Q Consensus         7 ~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~----~~~~~~~~Ds~~~~~hK~l~~P~g~g~   82 (239)
                      +||+-.---++|.+.|+.+|.++..+|...+++|..++.|.+-- ..+.    .--.+..+|.++++..-.++.   .|.
T Consensus       236 fiv~EGl~~N~g~i~pl~~iv~lk~Kyk~RvildEs~SfG~lg~-~GrGvteH~~v~~~~iDiv~~sm~~alas---~Gg  311 (467)
T KOG1358|consen  236 FIVVEGLYANTGDICPLPEIVKLKNKYKFRVILDESLSFGVLGK-TGRGVTEHFGVPITDIDIVTASMETALAS---GGG  311 (467)
T ss_pred             EEEEEeeccCCCcccccHHHHHHHhhheEEEEEecccccccccc-cCccccccCCCCccceeeeeecccccccc---cCc
Confidence            34444446789999999999999999999999999998886632 1111    111234699999998777654   445


Q ss_pred             EEeeCcccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcC
Q 048438           83 LWATNPEYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFP  161 (239)
Q Consensus        83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~  161 (239)
                      +.+.+.-.+....-.      ...+.+..+.+ +.+-+...++..+.++  .++++.....+..+...|+...++++.+.
T Consensus       312 Fc~G~~~i~~hQrLS------g~~Y~fSAslPp~la~aa~~ai~i~~~~--p~~~~~L~~k~~~~H~~l~~~s~~~v~~~  383 (467)
T KOG1358|consen  312 FCAGKSFIADHQRLS------GSGYCFSASLPPYLAGAAIKAILIEEWN--PEIVQPLRAKVAKFHAALSSNSGFIVSGS  383 (467)
T ss_pred             eeecceeeEeeeecc------ccceeeeccCchhhhhhHHHHHHHHhhC--cchhhhhhccccccchhhhcCCceEEecC
Confidence            555442222111100      01122222221 1122222233322222  23555566677778888888888999999


Q ss_pred             CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECC------EeEEEEEecCCCC
Q 048438          162 CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGG------IYAIRFATGATLT  235 (239)
Q Consensus       162 ~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g------~~~lR~~~~~~~t  235 (239)
                      +.++|+-..+.+..               .+.++-..+-+.+.++...++...+.-....+      ..-||+|+..-++
T Consensus       384 ~~SPi~hl~l~~~~---------------~s~e~e~~lL~eivd~~i~~~~ll~~a~~~~~~e~~~~~pSiri~~~a~~s  448 (467)
T KOG1358|consen  384 PESPIIHLQLERSY---------------GSREKEEKLLEEIVDKCIAEGVLLTRAKYLEKLERCPIPPSIRICVSAGMS  448 (467)
T ss_pred             cCCceeeeeecccc---------------cchHHHHHHHHHHHHHHHhhcceehhhhhhhhcccCCCCCcEEEEEeCCCC
Confidence            99999999987743               23344445556777777666555444343322      2579999988887


Q ss_pred             CcC
Q 048438          236 EER  238 (239)
Q Consensus       236 ~~~  238 (239)
                      ++|
T Consensus       449 eee  451 (467)
T KOG1358|consen  449 EEE  451 (467)
T ss_pred             HHH
Confidence            764

>PRK06105 aminotransferase; Provisional

Probab=98.23  E-value=4.9e-05  Score=67.87  Aligned_cols=207  Identities=9%  Similarity=0.033  Sum_probs=105.8

Q ss_pred             ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-c
Q 048438            4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-L   78 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~   78 (239)
                      .+.+|++--...+.|.+.|    +++|.++|++||+.+++|.+|.+.-....-+.....++. .|.+++  -|.+++- .
T Consensus       218 ~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~~f~~~~~~v~-PDi~~~--gK~lggG~~  294 (460)
T PRK06105        218 TIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGNMFGCETFGIK-PDILVM--SKQLSSSYQ  294 (460)
T ss_pred             ceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCchhhhHHhcCCC-CCeeee--ecccccCcc
Confidence            4566666666667788888    999999999999999999998543222211111123454 887765  6887653 2


Q ss_pred             cceEEEeeCcccccccccCCC--CccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCe
Q 048438           79 DCCCLWATNPEYLKNKATESK--PVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRF  156 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~  156 (239)
                      ..|.++.++ ++.........  ..+. ...+ ..+.+..+....++|+.+-.+   +..++..++.++|.+.|+++...
T Consensus       295 P~~av~~~~-~i~~~~~~~~~~~~~~~-h~~T-~~gnpl~~aaa~a~L~~i~~~---~l~~~v~~~g~~l~~~L~~l~~~  368 (460)
T PRK06105        295 PLSAVLMNE-KVYDPIADESGKIGTFG-HGFT-ASGHPVAAAVALENLAIIEER---DLVGNAAERGARLQARLRALADH  368 (460)
T ss_pred             cceEEEEcH-HHHHHHhcccccCcccc-cCCC-CCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHhhcC
Confidence            356666643 33222111000  0000 0011 112222223333445555433   44556668888888888765322


Q ss_pred             EEEcCC-C-eeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCC
Q 048438          157 EVVFPC-H-FAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATL  234 (239)
Q Consensus       157 ~~~~~~-~-~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~  234 (239)
                      .++.+. . --+..+.+......         .   ............+...+.++|.++..   . | .++|+++.--.
T Consensus       369 ~~v~~vrG~Gl~~gie~~~~~~~---------~---~~~~~~~~~a~~i~~~~~~~Gvl~~~---~-g-~~i~l~Ppl~i  431 (460)
T PRK06105        369 PLVGEVRGVGLIAAVELVADKAT---------K---TPFEPPGKVGARANAAAHEHGVISRA---M-G-DTLAFCPPLII  431 (460)
T ss_pred             CCeEEEEecceEEEEEEecCccc---------C---CCCCchhHHHHHHHHHHHHCCeEEEe---c-C-CEEEEECCCcc
Confidence            222221 1 22445555321100         0   00000022334677778878866532   1 2 47898755433


Q ss_pred             CC
Q 048438          235 TE  236 (239)
Q Consensus       235 t~  236 (239)
                      |+
T Consensus       432 t~  433 (460)
T PRK06105        432 TA  433 (460)
T ss_pred             CH
Confidence            43

>PRK07678 aminotransferase; Validated

Probab=98.23  E-value=9.3e-05  Score=65.98  Aligned_cols=211  Identities=11%  Similarity=0.036  Sum_probs=106.8

Q ss_pred             ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-c
Q 048438            4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-L   78 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~   78 (239)
                      .+.+|++--.....|.+.|    ++++.++|++||+.+++|..+.+.--...-+.....++. .|.+++  -|.+++- .
T Consensus       213 ~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~gv~-PDivt~--gK~lggG~~  289 (451)
T PRK07678        213 TIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGKAFGFMNYGVK-PDIITM--AKGITSAYL  289 (451)
T ss_pred             ceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCchhHHHHhcCCC-CCEEEe--ecccccCCc
Confidence            3456666555555677766    899999999999999999998543221111110023554 998876  6887653 2


Q ss_pred             cceEEEeeCcccccccccCCC-CccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC-CCe
Q 048438           79 DCCCLWATNPEYLKNKATESK-PVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD-KRF  156 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~-~g~  156 (239)
                      .+|.+.+++ +.......... ..+. ...+ ..+.+.......++++.+..+   +..++..++.++|.+.|++. ...
T Consensus       290 Pi~av~~~~-~i~~~~~~~~~~~~~~-h~~T-~~gnp~~~aaa~a~l~~l~~~---~~~~~~~~~g~~l~~~l~~~~~~~  363 (451)
T PRK07678        290 PLSATAVKK-EIYEAFKGKGEYEHFR-HVNT-FGGNPAACALALKNLEIMENE---NLIERSAQLGELLLEQLKEELGEH  363 (451)
T ss_pred             ceeEEEEcH-HHHHHHhccCcccccc-cCCC-CCcCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHhcC
Confidence            467777654 33221111000 0000 0011 112222223333445544333   34455567777777777532 111


Q ss_pred             EEEcC--CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEE--EEECCEeEEEEEecC
Q 048438          157 EVVFP--CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTN--VVLGGIYAIRFATGA  232 (239)
Q Consensus       157 ~~~~~--~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~--~~~~g~~~lR~~~~~  232 (239)
                      .++..  -...++.+.+......          ..+.+    .+....+.+.|.++|.+....  ++..+...+|+++..
T Consensus       364 ~~v~~vrg~Gl~~~i~~~~~~~~----------~~~~~----~~~a~~i~~~l~~~Gv~~~~~g~~v~~~~~~lrl~Ppl  429 (451)
T PRK07678        364 PLVGDIRGKGLLVGIELVNDKET----------KEPAD----NDKVASVVAACKEKGLIIGKNGDTVAGYNNVLTLSPPL  429 (451)
T ss_pred             CCEEEEEeeceEEEEEEecCCcc----------cCcCc----hHHHHHHHHHHHHCCcEEeecCccccCCCCEEEEECCC
Confidence            11111  1223555555321100          00001    234457778888888664321  112345789998776


Q ss_pred             CCCCc
Q 048438          233 TLTEE  237 (239)
Q Consensus       233 ~~t~~  237 (239)
                      ..|++
T Consensus       430 ~it~~  434 (451)
T PRK07678        430 VISSE  434 (451)
T ss_pred             cCCHH
Confidence            66654

>PRK05639 4-aminobutyrate aminotransferase; Provisional

Probab=98.23  E-value=7e-05  Score=66.83  Aligned_cols=199  Identities=14%  Similarity=0.042  Sum_probs=107.6

Q ss_pred             cEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438            5 PLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC   80 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~   80 (239)
                      ..+|++--.....|.+.|    +++|.++|++||+++++|.+|.+.--...-+.....++. .|.++  +-|.+++-.+.
T Consensus       223 iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~-PDiv~--~gK~l~gG~pi  299 (457)
T PRK05639        223 VAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTGKWFASEWFEVK-PDLII--FGKGVASGMGL  299 (457)
T ss_pred             eEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcCchHHHHHhcCCC-CCEEE--echhhcCCCcc
Confidence            455555555555677665    789999999999999999998753121111111123454 89888  58998755666


Q ss_pred             eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC-CCeEEE
Q 048438           81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD-KRFEVV  159 (239)
Q Consensus        81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~-~g~~~~  159 (239)
                      |+++.++ +... ....  ...    .+. .+.+.......++++.+..+   +..++..++.++|++.|+++ .+..++
T Consensus       300 ~av~~~~-~i~~-~~~~--~~~----~T~-~g~p~~~aaa~a~l~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~~  367 (457)
T PRK05639        300 SGVIGRK-ELMD-LTSG--SAL----LTP-AANPVISAAAEATLEIIEEE---NLLKNALKVGEFIKKRLLEMKESFEVI  367 (457)
T ss_pred             eeEEehH-HHHh-hcCC--Ccc----cCC-CcCHHHHHHHHHHHHHHHHc---cHHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence            7777643 3333 1110  000    111 12222223333445554333   34455567888888888763 123333


Q ss_pred             cCC--CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCCc
Q 048438          160 FPC--HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTEE  237 (239)
Q Consensus       160 ~~~--~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~  237 (239)
                      .+.  .--++.+.+..+...             .+    ......+.+.+.++|.+... . -.+..++|+++.--.|++
T Consensus       368 ~~VrG~Gl~~gve~~~~~~~-------------~~----~~~~~~~~~~~~~~Gv~~~~-~-g~~~~~lr~~Ppl~it~~  428 (457)
T PRK05639        368 GDVRGKGLMIGVEIVKENGK-------------PD----PELTGKICWRAFELGLILPS-Y-GMFGNVIRITPPLVITKE  428 (457)
T ss_pred             EeeccceeEEEEEEecCCCC-------------CC----HHHHHHHHHHHHhCCeEEee-c-CCCCCEEEEeCCCccCHH
Confidence            222  123445554321100             01    23445777788888866432 2 112468999977666554

>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]

Probab=98.23  E-value=6.4e-06  Score=69.20  Aligned_cols=157  Identities=17%  Similarity=0.221  Sum_probs=98.8

Q ss_pred             CccEEEEEecCCCCccc---ccChhHHHHHHHHhCCEEEEeccccc-ccccCc----ccccc-c-----CCCCCcceEEE
Q 048438            3 LIPLFLCATIGTTAITA---VDPLKPLCDVAKQFGIWVHVDAAYAG-SACIFP----EFRHF-I-----DGVEGADSFSL   68 (239)
Q Consensus         3 ~~p~~vv~t~gtt~~G~---i~pl~~i~~i~~~~gi~lhvD~A~~~-~~~~~~----~~~~~-~-----~~~~~~Ds~~~   68 (239)
                      .+|.++.....++.-|.   +.+++++.++|++|+|.+++|+|..+ .+..+.    .++.+ +     +-+..+|-++.
T Consensus       185 nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~sYaD~~~m  264 (471)
T COG3033         185 NVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARFAENAYFIKQREPGYRDWSIEEIAREMYSYADGCTM  264 (471)
T ss_pred             cCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhhhhhhhhhhhhcCcccccccHHHHHHHHHhhhhhhee
Confidence            46888888888888887   78899999999999999999998654 333332    22221 1     11235999999


Q ss_pred             cCcccCCCcccceEEEeeCccccc---ccc---cCCCCccCCCCceecCCCCCChHHHHHHHHH-hCHHHHHHHHHHHHH
Q 048438           69 NAHKWFFATLDCCCLWATNPEYLK---NKA---TESKPVVDYKDWQITLSRSFRSLKLWFVIRN-YGMENLRHFLRSHVN  141 (239)
Q Consensus        69 ~~hK~l~~P~g~g~l~~~~~~~l~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~g~~~~~~~~~~  141 (239)
                      |+-|=..++.| |++.++++.+..   ...   ....+..++   .--.||...+++.  .|+. +.    ...+++..+
T Consensus       265 S~KKD~lvnmG-Gfl~~~D~~~fDvy~~~~~~~V~~eG~~tY---Ggl~GrdmealAv--GL~e~~~----~~yl~~Rv~  334 (471)
T COG3033         265 SAKKDGLVNMG-GFLCFKDDSFFDVYEECRTLVVVQEGFPTY---GGLAGRDMEALAV--GLREGVN----FDYLAHRVA  334 (471)
T ss_pred             eccccceeccc-cEEEecCccHHHHHHHHHhheEeecccccc---CcccchhHHHHHH--HHHHhcC----cHHHHHHHH
Confidence            99999999986 788888764311   100   001112222   1112344433322  2221 11    345566667


Q ss_pred             HHHHHHHHHhCCCCeEEEcCCCeeEEEEE
Q 048438          142 MARLFERLVSGDKRFEVVFPCHFAVVCFR  170 (239)
Q Consensus       142 la~~l~~~l~~~~g~~~~~~~~~~iv~f~  170 (239)
                      ..+||.++|.+. |+.|+.|..-.-|.+.
T Consensus       335 Qv~YL~~~l~~~-GVpi~~paGGHavfvd  362 (471)
T COG3033         335 QVQYLADGLEEA-GVPIVQPAGGHAVFVD  362 (471)
T ss_pred             HHHHHHHHHHhc-CCeeEecCCCceEEee
Confidence            788999999986 9988877655555444

>PLN02607 1-aminocyclopropane-1-carboxylate synthase

Probab=98.23  E-value=0.00011  Score=65.56  Aligned_cols=201  Identities=12%  Similarity=0.051  Sum_probs=103.9

Q ss_pred             CCccEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCccccc---ccCCC------CCcceEEEc
Q 048438            2 GLIPLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRH---FIDGV------EGADSFSLN   69 (239)
Q Consensus         2 g~~p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~---~~~~~------~~~Ds~~~~   69 (239)
                      |..+-+|+.+.-+|.+|.+-|   +++|.++|++|++++++|.+|+.....-+.+..   ....+      +.+ .++.+
T Consensus       198 ~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v-~vi~s  276 (447)
T PLN02607        198 NIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERV-HIVYS  276 (447)
T ss_pred             CCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcccHHHHHhhcCCCCCcCcE-EEEEc
Confidence            445556777888999999877   778889999999999999999764332111111   11111      112 34679


Q ss_pred             CcccCCCc-ccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCH-----HHHHHHHHHHHHHH
Q 048438           70 AHKWFFAT-LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGM-----ENLRHFLRSHVNMA  143 (239)
Q Consensus        70 ~hK~l~~P-~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-----~g~~~~~~~~~~la  143 (239)
                      +.|-++.| .-+|+++..++..+......       ..+.. .    ..+....+...+..     .-+++..++..+..
T Consensus       277 ~SK~fg~~GlRvG~ivs~n~~l~~~~~~~-------~~~~~-~----s~~~q~~~~~~L~d~~~~~~~l~~~r~~l~~~~  344 (447)
T PLN02607        277 LSKDLGLPGFRVGTIYSYNDKVVTTARRM-------SSFTL-V----SSQTQHLLASMLSDEEFTENYIRTNRERLRKRY  344 (447)
T ss_pred             chhcCCCCcceEEEEEEcCHHHHHHHHHH-------hhcCC-C----CHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Confidence            99998644 33677776443332211100       00000 0    01111111112211     11233334445566


Q ss_pred             HHHHHHHhCCCCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhc-CcEEEEEEEEC-
Q 048438          144 RLFERLVSGDKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINAS-GKAYMTNVVLG-  221 (239)
Q Consensus       144 ~~l~~~l~~~~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~-  221 (239)
                      +.+.+.|++. |++.+.+....-+.++++..-.              ...   .+...++.+++.++ |..+.++.... 
T Consensus       345 ~~~~~~L~~~-gi~~~~~~ag~fvw~~L~~~~~--------------~~~---~~~e~~l~~~ll~~~gV~v~pG~~f~~  406 (447)
T PLN02607        345 EMIVQGLRRA-GIECLKGNAGLFCWMNLSPLLE--------------TPT---REGELALWDSILREVKLNISPGSSCHC  406 (447)
T ss_pred             HHHHHHHHhC-CCCcccCCeeEEEEEEchHhhc--------------CCC---chhHHHHHHHHHHhCCEEEcCccccCC
Confidence            6777888875 7765533333345555532100              000   01112566666654 44444334332 


Q ss_pred             -CEeEEEEEecCC
Q 048438          222 -GIYAIRFATGAT  233 (239)
Q Consensus       222 -g~~~lR~~~~~~  233 (239)
                       ...|+|+++.+.
T Consensus       407 ~~~g~fRi~fa~~  419 (447)
T PLN02607        407 SEPGWFRVCFANM  419 (447)
T ss_pred             CCCCEEEEEeccC
Confidence             357999998863

>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase

Probab=98.22  E-value=4.7e-05  Score=66.57  Aligned_cols=155  Identities=13%  Similarity=0.001  Sum_probs=80.3

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCc-ccccc---cCCCC----CcceEEEcCccc
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFP-EFRHF---IDGVE----GADSFSLNAHKW   73 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~-~~~~~---~~~~~----~~Ds~~~~~hK~   73 (239)
                      +-+|+.+.-+|.||.+.+   +++|+++|++|++++++|.++.-....-. .....   ...+.    .-=.++.|+.|.
T Consensus       166 ~k~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~  245 (393)
T TIGR03538       166 CQLLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKR  245 (393)
T ss_pred             ceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecchhh
Confidence            345566778999999888   78889999999999999999874332100 00000   00110    011678899996


Q ss_pred             CCCc-ccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHh
Q 048438           74 FFAT-LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYG-MENLRHFLRSHVNMARLFERLVS  151 (239)
Q Consensus        74 l~~P-~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~g~~~~~~~~~~la~~l~~~l~  151 (239)
                      ++.| .-+|+++. .+..+......          ....+....++....++..+. .+-+++..+...+..+.+.+.|+
T Consensus       246 ~~~~GlRvG~~i~-~~~l~~~~~~~----------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~  314 (393)
T TIGR03538       246 SNLPGLRSGFVAG-DAEILKAFLRY----------RTYHGCAMPIPTQLASIAAWNDEQHVRENRALYREKFAAVLEILG  314 (393)
T ss_pred             cCCcccceEEEec-CHHHHHHHHHH----------HHhhccCcCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence            4433 44676654 33333322110          000000111222222222222 23344555555666677777776


Q ss_pred             CCCCeEEEcCCCeeEEEEEEc
Q 048438          152 GDKRFEVVFPCHFAVVCFRVS  172 (239)
Q Consensus       152 ~~~g~~~~~~~~~~iv~f~~~  172 (239)
                      +.  +.+..+...+-+.++++
T Consensus       315 ~~--~~~~~p~gg~f~~~~~~  333 (393)
T TIGR03538       315 QV--LDLELPDAGFYLWPKVP  333 (393)
T ss_pred             hh--CcccCCCeeEEEEEECC
Confidence            53  33333444455555554

This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]

Probab=98.22  E-value=2.6e-05  Score=67.11  Aligned_cols=141  Identities=19%  Similarity=0.275  Sum_probs=89.1

Q ss_pred             ecCCCCccccc-ChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-----ccceEEE
Q 048438           11 TIGTTAITAVD-PLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-----LDCCCLW   84 (239)
Q Consensus        11 t~gtt~~G~i~-pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-----~g~g~l~   84 (239)
                      ..-.+..|.+. +|.||+++.|++|-.+..|||---..+-.-  +.  -++ ++|+.-+|+||.++.|     +|.|-+-
T Consensus       210 iTnPsT~GvFE~~I~ei~~ivH~~Gg~vY~DGANlNA~vG~~--rP--Gd~-G~DV~HlNLHKTF~iPHGGGGPG~GPvg  284 (496)
T COG1003         210 ITNPSTLGVFEEDIREICEIVHEAGGQVYYDGANLNAIVGLA--RP--GDM-GFDVVHLNLHKTFCIPHGGGGPGAGPVG  284 (496)
T ss_pred             eccCcccccchhhHHHHHHHHHHcCCEEEecCcchhhhhccc--cc--ccc-ccceEEeecccccccCCCCCCCCCCcee
Confidence            33345578864 599999999999999999998532222111  10  112 5999999999999988     4566677


Q ss_pred             eeCc--ccccccc---cCCCCccCCCCceecCCC---CCCh----HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhC
Q 048438           85 ATNP--EYLKNKA---TESKPVVDYKDWQITLSR---SFRS----LKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSG  152 (239)
Q Consensus        85 ~~~~--~~l~~~~---~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~  152 (239)
                      |+..  +|+-...   .......++... -..++   .++.    ...|..++.+|.+|+++.-+...-+|+|+..+|+.
T Consensus       285 Vk~~L~pfLP~p~~~~~~~~y~~~~~~~-~s~g~~~a~~Gs~~il~~a~~YI~~mG~~GL~~ase~AvLNANYia~rL~~  363 (496)
T COG1003         285 VKAHLAPFLPGPVVYHDVGEYRLDYDGK-KSIGVSAAPYGSASILPIAWAYIRMMGADGLKQASEVAVLNANYIARRLKG  363 (496)
T ss_pred             hHhhccccCCCCcccCCCccccccCCCC-ccceeeccccCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHhhh
Confidence            6531  2332210   000001111100 00111   1222    45677889999999999999999999999999985


Q ss_pred             CCCeEEE
Q 048438          153 DKRFEVV  159 (239)
Q Consensus       153 ~~g~~~~  159 (239)
                        .+++.
T Consensus       364 --~y~~~  368 (496)
T COG1003         364 --YYPVP  368 (496)
T ss_pred             --cCccc
Confidence              45554

>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.22  E-value=6.2e-05  Score=66.62  Aligned_cols=195  Identities=11%  Similarity=-0.029  Sum_probs=100.4

Q ss_pred             cEEEEEecC-CCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-c
Q 048438            5 PLFLCATIG-TTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-L   78 (239)
Q Consensus         5 p~~vv~t~g-tt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~   78 (239)
                      +.+|++--. ....|.+.|    +++|.++|++||+++++|.+|.+.--...-+.....++. .|.++  +-|.+++- .
T Consensus       207 iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~-PDiv~--~gK~l~gG~~  283 (429)
T PRK06173        207 IAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGKLFALEHAGVV-PDIMC--IGKALTGGYL  283 (429)
T ss_pred             EEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCCcchHHHhcCCC-CCEEE--eehhhhCCcc
Confidence            445555543 344465533    789999999999999999999542111111000123443 88887  58987543 2


Q ss_pred             cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 048438           79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEV  158 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~  158 (239)
                      .++.++.++ +............+.. ..++ .+.+.......++++.+-.+   +..++..++.++|.+.|++..++..
T Consensus       284 p~~a~~~~~-~i~~~~~~~~~~~~~~-~~T~-~g~p~~~aaa~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~~~~~~~  357 (429)
T PRK06173        284 TLSATITTE-AIAQTICSGEAKCFMH-GPTF-MANPLACAIAAESIRLLLES---PWQQNIQRIEAQLKQELAPAAEFDS  357 (429)
T ss_pred             ccceEEecH-HHHHHHhcCCCCcccc-CCCC-CcCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            355555543 2221111000000000 0011 12222333344445554333   3355666888899998875433333


Q ss_pred             EcC--CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCC
Q 048438          159 VFP--CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTE  236 (239)
Q Consensus       159 ~~~--~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~  236 (239)
                      +.+  ....|+.+.+....                       ....+.+.|.++|.+...    .| .++|+.+---.|+
T Consensus       358 v~~vRg~Gl~~~iel~~~~-----------------------~~~~i~~~l~e~Gi~v~~----~g-~~l~~~Ppl~it~  409 (429)
T PRK06173        358 VAEVRVLGAIGVVEMKEPV-----------------------NMATLQPRFVEHGIWVRP----FG-KLVYIMPPFIISP  409 (429)
T ss_pred             eeeeeccceEEEEEeCCcc-----------------------cHHHHHHHHHHCCeEEEe----cC-CEEEEeCCccCCH
Confidence            322  23456667775421                       123667778888765432    23 4889886544443

>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type

Probab=98.21  E-value=4.8e-05  Score=67.80  Aligned_cols=189  Identities=12%  Similarity=0.117  Sum_probs=101.2

Q ss_pred             cEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCC-CcceEEEcCcccCCCccc
Q 048438            5 PLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVE-GADSFSLNAHKWFFATLD   79 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~-~~Ds~~~~~hK~l~~P~g   79 (239)
                      ..+|++--...+.|.+-|    +++|.++|++||+.+++|.+|.+.-....-+.....++. ..|.+++  -|.+++   
T Consensus       252 iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGrtG~~fa~e~~gv~~~PDi~t~--gK~lg~---  326 (464)
T TIGR00699       252 VAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATGKFWAHEHWNLDDPPDMVTF--SKKFQT---  326 (464)
T ss_pred             EEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCCCCcchhHHHhcCCCCCCCEEEe--hhhhcc---
Confidence            556676666677788888    999999999999999999998653221111111122332 4898766  688742   


Q ss_pred             ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC-CeE-
Q 048438           80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK-RFE-  157 (239)
Q Consensus        80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~-g~~-  157 (239)
                      .|++ +.. +.+.....    ..  . .+-..+.+.......++++.+-.+   +..++..++.++|.+.|+++. .+. 
T Consensus       327 gG~~-~~~-~~~~~~~~----~~--~-~~T~~gnp~~~aaa~a~L~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~  394 (464)
T TIGR00699       327 AGYF-FHD-PAFRPNKP----YR--Q-FNTWMGDPSRALILREIIQEIKRK---DLLENVAHVGDYLYTGLEDLQKKYPE  394 (464)
T ss_pred             CCcc-ccc-hhccCCCC----cc--c-ccCCCCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            2333 222 11111000    00  0 000111122222233345544333   344455566777777776531 122 


Q ss_pred             EEcC----CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCC
Q 048438          158 VVFP----CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGAT  233 (239)
Q Consensus       158 ~~~~----~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~  233 (239)
                      ++..    ....++.+.++.                       ......+.+.+.++|.+...    .|..+||+++.-.
T Consensus       395 ~i~~vRg~G~Glm~gie~~~-----------------------~~~~~~i~~~~~~~Gvl~~~----~g~~~ir~~Ppl~  447 (464)
T TIGR00699       395 FIQNLRGKGRGTFIAWDTPD-----------------------EAKRDKLLKKARNNGVNIGG----CGVKAIRLRPMLV  447 (464)
T ss_pred             ceeeecccCeEEEEEEecCC-----------------------HHHHHHHHHHHHHCCcEEec----CCCCeEEEeCCCC
Confidence            1222    334566666632                       12345778888888866432    2557899997666


Q ss_pred             CCCc
Q 048438          234 LTEE  237 (239)
Q Consensus       234 ~t~~  237 (239)
                      .|++
T Consensus       448 it~~  451 (464)
T TIGR00699       448 FQKH  451 (464)
T ss_pred             CCHH
Confidence            5554

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK07036 hypothetical protein; Provisional

Probab=98.18  E-value=7.9e-05  Score=66.69  Aligned_cols=202  Identities=9%  Similarity=0.015  Sum_probs=103.3

Q ss_pred             ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccc-cCCCCCcceEEEcCcccCCCcc
Q 048438            4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF-IDGVEGADSFSLNAHKWFFATL   78 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~-~~~~~~~Ds~~~~~hK~l~~P~   78 (239)
                      .+.+|++--...+.|.+.|    +++|.++|++||+.+++|..+.+.--...-+... ..++. .|.+++  -|.+++-+
T Consensus       220 ~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~~gv~-PDivt~--gK~l~gG~  296 (466)
T PRK07036        220 NIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGHFFASEAVFGIQ-PDIITF--AKGLTSGY  296 (466)
T ss_pred             ceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCchhhhhhhhcCCC-CCEEEE--ccccccCc
Confidence            4567777766677788888    9999999999999999999986532211111100 12444 898876  68876532


Q ss_pred             -cceEEEeeCcccccccccC--CCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 048438           79 -DCCCLWATNPEYLKNKATE--SKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKR  155 (239)
Q Consensus        79 -g~g~l~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g  155 (239)
                       .+|.+..++ +........  ....+. ...++ .+.+.......+.|+.+..+   +..++..++.++|.+.|+++..
T Consensus       297 ~Pi~av~~~~-~i~~~~~~~~~~~~~~~-~~~T~-~gnpl~~aaa~a~Le~i~~~---~l~~~~~~~g~~l~~~L~~l~~  370 (466)
T PRK07036        297 QPLGAVIISE-RLLDVISGPNAKGNVFT-HGFTY-SGHPVACAAALKNIEIMERE---GLCEHVREVGPYFEERLASLRE  370 (466)
T ss_pred             cccEEEEEcH-HHHHHHhcccCcCcccc-cCCCC-CCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHhcc
Confidence             366677643 332221100  000000 00111 12222223333344544333   4555666888888888876422


Q ss_pred             eEEEcCC--CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEec
Q 048438          156 FEVVFPC--HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATG  231 (239)
Q Consensus       156 ~~~~~~~--~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~  231 (239)
                      ..++...  .-.++.+.+......         .   ........+...+.+.+.++|.+...    .+ ..+|+++-
T Consensus       371 ~~~v~~vrG~Gl~~~ve~~~~~~~---------~---~~~~~~~~~~~~~~~~~~~~Gvl~~~----~~-~~~~l~Pp  431 (466)
T PRK07036        371 LPLVGDVRGDHLMACVECVADKGS---------K---ALLPEDIAIGQRIDRHCQERGLLVRP----LE-HLCVLSPP  431 (466)
T ss_pred             CCCEEEEEeeceEEEEEEccCccc---------c---CCCCchhHHHHHHHHHHHHCCcEEee----cC-CEEEEeCC
Confidence            2222221  123555555321100         0   00000123445677788888866532    12 45776643

>PRK07392 threonine-phosphate decarboxylase; Validated

Probab=98.17  E-value=0.00013  Score=62.94  Aligned_cols=189  Identities=11%  Similarity=0.008  Sum_probs=104.2

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCccccc---ccCCCCCcceEEEcCcccCCCc-cc
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRH---FIDGVEGADSFSLNAHKWFFAT-LD   79 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~---~~~~~~~~Ds~~~~~hK~l~~P-~g   79 (239)
                      .+.+++++.-+|.||.+.+-++|.++++++++ +++|.++.-...... ...   .....+ -=+++.|+.|.++.| .-
T Consensus       148 ~~~~~~l~nP~NPTG~~~~~~~l~~l~~~~~~-~IiDE~y~~~~~~~~-~~s~~~~~~~~~-~vi~i~S~SK~~~l~GlR  224 (360)
T PRK07392        148 PNDGLLLNNPHNPTGKLWSREAILPLLEQFAL-VVVDEAFMDFLPPDA-EQSLIPCLAEYP-NLIILRSLTKFYSLPGLR  224 (360)
T ss_pred             CCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCE-EEEECchhhhccCcc-ccchHHHhhcCC-CEEEEEechhhhcCCchh
Confidence            34567777789999999999999999999985 777999875432110 001   111111 115667999998744 44


Q ss_pred             ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHH-HHHHHHHHHHHHHHHHhCCCCeEE
Q 048438           80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRH-FLRSHVNMARLFERLVSGDKRFEV  158 (239)
Q Consensus        80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~-~~~~~~~la~~l~~~l~~~~g~~~  158 (239)
                      +|+++. .++.+.......      ..+.      ...+..+.+...+....+.+ ..+...+..+++.+.|++++|+.+
T Consensus       225 iG~~v~-~~~~~~~~~~~~------~~~~------~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~  291 (360)
T PRK07392        225 LGYAIA-HPDRLQRWQQWR------DPWP------VNGLAAAAAIAALADRDFQQQTWAWLPPAREALFQGLASLPGLTP  291 (360)
T ss_pred             eeeeeC-CHHHHHHHHhhC------CCCC------CCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCCcEE
Confidence            777765 333333221100      0011      11233333333332222222 233445667778888988888876


Q ss_pred             EcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHh-cCcEEEEEEEEC--CEeEEEEEecCCC
Q 048438          159 VFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINA-SGKAYMTNVVLG--GIYAIRFATGATL  234 (239)
Q Consensus       159 ~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~~--g~~~lR~~~~~~~  234 (239)
                      . +...+-+.++++..                         ..++.+++.+ .|..+.......  +..++|+++..+.
T Consensus       292 ~-~~~~~fl~~~~~~~-------------------------~~~l~~~ll~~~gv~v~pg~~f~~~~~~~iRi~~~~~~  344 (360)
T PRK07392        292 L-PSAANFLLVQSQGS-------------------------ALQLQEKLLQQHRILIRDCLSFPELGDRYFRVAVRTEA  344 (360)
T ss_pred             C-CCCCCEEEEEcCCC-------------------------HHHHHHHHHhhCCEEEEeCCCCCCCCCCEEEEEeCCHH
Confidence            4 44455554444321                         1245556544 455555444332  3469999988753

>PRK05965 hypothetical protein; Provisional

Probab=98.17  E-value=9.4e-05  Score=66.09  Aligned_cols=208  Identities=13%  Similarity=0.097  Sum_probs=106.7

Q ss_pred             ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcc-
Q 048438            4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATL-   78 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~-   78 (239)
                      ...+|++--.....|.+.|    +++|.++|++||+.+++|..+.+.--...-+.....++. .|.+++  -|.|++-+ 
T Consensus       215 ~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~-PDiv~~--gKgl~gG~~  291 (459)
T PRK05965        215 NVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGPLFACEAEGVV-PDLMTV--AKGLTSGYV  291 (459)
T ss_pred             ceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCchhhhHhhcCCC-CCeEEe--chhhccCCc
Confidence            3456666555555666554    789999999999999999998764222211111123454 999987  58876542 


Q ss_pred             cceEEEeeCcccccccccCC--CCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCe
Q 048438           79 DCCCLWATNPEYLKNKATES--KPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRF  156 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~  156 (239)
                      ..|.+++++ +.........  ...+. ...++ .+.+.......+.|+.+..+   +..++..++.++|.+.|+++...
T Consensus       292 Pi~av~~~~-~i~~~~~~~~~~~~~~~-h~~T~-~gnpl~~Aaa~a~L~~l~~~---~l~~~~~~~g~~l~~~l~~l~~~  365 (459)
T PRK05965        292 PMGAVLMSD-HVYQGIADGAGAAAPVG-HGYTY-SAHPVSAAVGLEVLRLYHEG---GLLANGQKAGPRFAAGLDALRAH  365 (459)
T ss_pred             ceeEEEEcH-HHHHHHhcccccccccc-ccCCC-CCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHhhccC
Confidence            467777654 3322111100  00000 00111 12222223333445554333   34455668888888888775322


Q ss_pred             EEEcCC--CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCC
Q 048438          157 EVVFPC--HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATL  234 (239)
Q Consensus       157 ~~~~~~--~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~  234 (239)
                      .++.+.  .--++.+.+......         .   ...+....+..++.+.+.++|.++..    .|..++|+++---.
T Consensus       366 ~~v~~vrG~Gl~~gie~~~~~~~---------~---~~~~~~~~~~~~i~~~~~~~Gll~~~----~g~~~i~~~PpL~i  429 (459)
T PRK05965        366 PLVGDVRGRGLLGALELVADKAT---------K---TPFDAALDPADRIFDRAYANGLVFRA----FGDGVLGFAPALCC  429 (459)
T ss_pred             CCEEEEeecceEEEEEEeccccc---------c---CCCCchhHHHHHHHHHHHhCCeEEEe----cCCcEEEEECCCcC
Confidence            222221  122445555321100         0   00000023445777788888876532    25567898855444


Q ss_pred             CC
Q 048438          235 TE  236 (239)
Q Consensus       235 t~  236 (239)
                      |+
T Consensus       430 t~  431 (459)
T PRK05965        430 TE  431 (459)
T ss_pred             CH
Confidence            43

>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]

Probab=98.16  E-value=3.1e-06  Score=72.50  Aligned_cols=83  Identities=19%  Similarity=0.179  Sum_probs=54.9

Q ss_pred             EEEEecCCCCccc--ccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEE
Q 048438            7 FLCATIGTTAITA--VDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLW   84 (239)
Q Consensus         7 ~vv~t~gtt~~G~--i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~   84 (239)
                      ++.-++.++. |.  -.++++++++||++|++++||.|-+.-.-.-+..+..++  .++|.+++|++|.|++|. +|++.
T Consensus       159 ~llkV~s~~~-~f~~~l~~~~l~~ia~~~~lpvivD~aSg~~v~~e~~l~~~la--~GaDLV~~SgdKllgGPq-aGii~  234 (395)
T COG1921         159 LLLKVHSSNY-GFTGMLSEEELVEIAHEKGLPVIVDLASGALVDKEPDLREALA--LGADLVSFSGDKLLGGPQ-AGIIV  234 (395)
T ss_pred             eEEEEeeccc-cccccccHHHHHHHHHHcCCCEEEecCCccccccccchhHHHh--cCCCEEEEecchhcCCCc-cceEe
Confidence            3344444433 43  346788999999999999999987643221222222232  259999999999999998 67666


Q ss_pred             eeCccccccc
Q 048438           85 ATNPEYLKNK   94 (239)
Q Consensus        85 ~~~~~~l~~~   94 (239)
                      - +.+++...
T Consensus       235 G-kKelI~~l  243 (395)
T COG1921         235 G-KKELIEKL  243 (395)
T ss_pred             c-hHHHHHHH
Confidence            5 44565433

>PRK06062 hypothetical protein; Provisional

Probab=98.16  E-value=0.00019  Score=63.93  Aligned_cols=208  Identities=11%  Similarity=-0.030  Sum_probs=103.4

Q ss_pred             ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcc-
Q 048438            4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATL-   78 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~-   78 (239)
                      .+.+|++--...+-|.+.|    +++|.++|++||+.+++|.+|.+.--....+.....++. .|.+++  -|.+++-+ 
T Consensus       214 ~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~~~~gv~-PDi~t~--gK~lggG~~  290 (451)
T PRK06062        214 TIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKWFAIEHFGVV-PDLITF--AKGVNSGYV  290 (451)
T ss_pred             ceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcHHHHHHhcCCC-CCeeee--chhhhcCCc
Confidence            3456666666667788888    999999999999999999999863221111111123554 897765  79987632 


Q ss_pred             cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHH-HHHHHHHhCCC-Ce
Q 048438           79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMA-RLFERLVSGDK-RF  156 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la-~~l~~~l~~~~-g~  156 (239)
                      ..|.++.++ +........   .+ ....++ .+.+.......++|+.+..+.   ..++..++. +++.+.|+++. .+
T Consensus       291 Pigav~~~~-~i~~~~~~~---~~-~~~~T~-~gnpl~~Aaa~a~L~~l~~~~---l~~~~~~~G~~~l~~~L~~l~~~~  361 (451)
T PRK06062        291 PLGGVAISE-AIAATFADR---PY-PGGLTY-SGHPLACAAAVATINAMEEEG---IVENAARIGAEVLGPGLRELAERH  361 (451)
T ss_pred             CcEEEEEcH-HHHHHhccC---CC-CCCCCC-CCCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHhcC
Confidence            356666654 333222100   00 000111 122222233334455543333   344444665 46666665431 11


Q ss_pred             EEEcCC--CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCC
Q 048438          157 EVVFPC--HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATL  234 (239)
Q Consensus       157 ~~~~~~--~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~  234 (239)
                      .++...  .--+..+.+......         ................+.+.|.++|.+...   .  ...+|+++....
T Consensus       362 ~~v~~vrG~Gl~~gve~~~~~~~---------~~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~---~--~~~lrl~ppl~~  427 (451)
T PRK06062        362 PSVGEVRGLGVFWALELVADRET---------REPLAPYGASSAAMAAVKAACKERGLLPFV---N--GNRIHVVPPCTV  427 (451)
T ss_pred             CcEEeEeccccEEEEEEcccccc---------cCCCcccchhhHHHHHHHHHHHHCCcEEee---c--CCEEEEECCccC
Confidence            111111  122445554321100         000000000123445778888888876432   1  247898865555


Q ss_pred             CCc
Q 048438          235 TEE  237 (239)
Q Consensus       235 t~~  237 (239)
                      |++
T Consensus       428 t~~  430 (451)
T PRK06062        428 TED  430 (451)
T ss_pred             CHH
Confidence            544

>PLN02450 1-aminocyclopropane-1-carboxylate synthase

Probab=98.16  E-value=0.00011  Score=65.73  Aligned_cols=199  Identities=10%  Similarity=0.040  Sum_probs=103.7

Q ss_pred             CccEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCccccccc---C-----CC--CCcceEEEc
Q 048438            3 LIPLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFI---D-----GV--EGADSFSLN   69 (239)
Q Consensus         3 ~~p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~---~-----~~--~~~Ds~~~~   69 (239)
                      ..+-+|+++.-+|.||.+.+   +++|.++|++|++++++|.+++.....-+.+...+   .     +.  ..-=.+..+
T Consensus       190 ~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S  269 (468)
T PLN02450        190 LKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVYS  269 (468)
T ss_pred             CCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccccCCCCcccHHHHhhhcccccCCCCCcEEEEEe
Confidence            35666777778899999877   55678888999999999999875322111111101   0     00  001145779


Q ss_pred             CcccCCCc-ccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCH-----HHHHHHHHHHHHHH
Q 048438           70 AHKWFFAT-LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGM-----ENLRHFLRSHVNMA  143 (239)
Q Consensus        70 ~hK~l~~P-~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-----~g~~~~~~~~~~la  143 (239)
                      +.|.++.| .=+|+++..++.........       ..+.     ....+....+...+..     .-+++..++..+..
T Consensus       270 ~SK~~~l~GlRiG~li~~~~~l~~~~~~~-------~~~~-----~~s~~~Q~a~~~~L~~~~~~~~~l~~~~~~l~~rr  337 (468)
T PLN02450        270 LSKDLGLPGFRVGAIYSNDEMVVSAATKM-------SSFG-----LVSSQTQYLLSALLSDKKFTKNYLEENQKRLKQRQ  337 (468)
T ss_pred             ccccCCCCCccEEEEEECCHHHHHHHHHH-------hhcC-----CCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Confidence            99988633 44777776432222211100       0000     0011222222222221     12445556666777


Q ss_pred             HHHHHHHhCCCCeEEEcCCCee-EEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhc-CcEEEEEEEEC
Q 048438          144 RLFERLVSGDKRFEVVFPCHFA-VVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINAS-GKAYMTNVVLG  221 (239)
Q Consensus       144 ~~l~~~l~~~~g~~~~~~~~~~-iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~  221 (239)
                      +.+.+.|++. |+++. +++.+ -+.++++..-               .+.. . +....+.++|.++ |..+.+.....
T Consensus       338 ~~l~~~L~~~-gi~~~-~~~~g~flwi~l~~~~---------------~~~~-~-~~~~~l~~~ll~~~gV~v~PG~~f~  398 (468)
T PLN02450        338 KKLVSGLEAA-GIKCL-KSNAGLFCWVDMRHLL---------------KSNT-F-EAEMELWKKIVYEVKLNISPGSSCH  398 (468)
T ss_pred             HHHHHHHHHc-CCccc-CCCceEEEEEEchHhc---------------CcCC-c-hHHHHHHHHHHHhCCEEEeCccccC
Confidence            7888888886 77654 45555 4445553210               0000 0 0112455666554 55544433332


Q ss_pred             --CEeEEEEEecC
Q 048438          222 --GIYAIRFATGA  232 (239)
Q Consensus       222 --g~~~lR~~~~~  232 (239)
                        +..++|+++.+
T Consensus       399 ~~~~g~~Rl~f~~  411 (468)
T PLN02450        399 CTEPGWFRVCFAN  411 (468)
T ss_pred             CCCCCEEEEEecC
Confidence              35699999886

>KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism]

Probab=98.16  E-value=0.00011  Score=60.84  Aligned_cols=147  Identities=13%  Similarity=0.053  Sum_probs=97.7

Q ss_pred             CCccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCC-cccc
Q 048438            2 GLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFA-TLDC   80 (239)
Q Consensus         2 g~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~-P~g~   80 (239)
                      |-...+|+.+...-.||...++.+|...-+..|+++=.|=||+.|-+++-     +..|. +|+.+++..|.+.+ +.|.
T Consensus       212 gDeiA~v~fSGvqyYTGQ~Fdi~aIT~Agq~kgc~VGfDLAHAvgNVpL~-----LHdWg-VDFACWCSYKYlnaGaGgI  285 (465)
T KOG3846|consen  212 GDEIALVCFSGVQYYTGQYFDIGAITFAGQFKGCLVGFDLAHAVGNVPLQ-----LHDWG-VDFACWCSYKYLNAGAGGI  285 (465)
T ss_pred             CCeEEEEEeecceeecccccchhhhhhcccCCCcEechhhhhhhcCCceE-----EeecC-CceEEEeeecccccCCCcc
Confidence            44456677777789999999999999777778999999999999988775     55664 99999999999965 6678


Q ss_pred             eEEEeeCcccccccc---cCCCC-----------ccC--CCCceecCCCC--CChHHHHHHHHHhCHHHHHHHHHHHHHH
Q 048438           81 CCLWATNPEYLKNKA---TESKP-----------VVD--YKDWQITLSRS--FRSLKLWFVIRNYGMENLRHFLRSHVNM  142 (239)
Q Consensus        81 g~l~~~~~~~l~~~~---~~~~~-----------~~~--~~~~~~~~~~~--~~~~~~~~~l~~~g~~g~~~~~~~~~~l  142 (239)
                      |.+++.+. ......   ..+.+           .++  .+..++..+.+  ....++..+|+.+..-.+.+...+..-|
T Consensus       286 gGlFvHek-h~~~~~prl~GWwgh~~s~RF~Mdnvl~lipGa~GfRiSNPpi~~v~al~~SLe~F~q~~~~~lRkrS~lL  364 (465)
T KOG3846|consen  286 GGLFVHEK-HTKESLPRLAGWWGHDPSKRFQMDNVLELIPGALGFRISNPPIIDVVALRSSLELFAQFNINELRKRSLLL  364 (465)
T ss_pred             ceeeeehh-hhcchhhHHhhhccCCcchhhhhccccccCccccccccCCCcHhHHHHHHhhHHHHHHhhHHHHhhhhhhH
Confidence            88888432 111110   00000           000  00011111111  2235566667766666777888888899


Q ss_pred             HHHHHHHHhCCCC
Q 048438          143 ARLFERLVSGDKR  155 (239)
Q Consensus       143 a~~l~~~l~~~~g  155 (239)
                      +.|+...++...|
T Consensus       365 TgYleyL~k~~~g  377 (465)
T KOG3846|consen  365 TGYLEYLLKASKG  377 (465)
T ss_pred             HhHHHHHHHHhcc
Confidence            9999888876433

>PRK07590 L,L-diaminopimelate aminotransferase; Validated

Probab=98.16  E-value=0.00019  Score=63.07  Aligned_cols=201  Identities=14%  Similarity=0.064  Sum_probs=101.9

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCC---cceEEEcCcccCCCc-
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEG---ADSFSLNAHKWFFAT-   77 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~---~Ds~~~~~hK~l~~P-   77 (239)
                      |-+|+++.-+|.||.+.+   +++|+++|++||++++.|.+|+-....-.... .+..++.   .-++..|+.|.++.| 
T Consensus       177 ~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~-~~~~~~~~~~~vi~~~SfSK~~~~pG  255 (409)
T PRK07590        177 VDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPH-SIYEIEGARECAIEFRSFSKTAGFTG  255 (409)
T ss_pred             ceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCc-chhhCCCcccceEEEecCccccCCcC
Confidence            445555666899999877   55677888999999999999874322111000 0111111   124567999998644 


Q ss_pred             ccceEEEeeCcccccccccCCCCccC--CCCceecCCCCCChHHHHHHHHHh---CHHHHHHHHHHHHHHHHHHHHHHhC
Q 048438           78 LDCCCLWATNPEYLKNKATESKPVVD--YKDWQITLSRSFRSLKLWFVIRNY---GMENLRHFLRSHVNMARLFERLVSG  152 (239)
Q Consensus        78 ~g~g~l~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~---g~~g~~~~~~~~~~la~~l~~~l~~  152 (239)
                      .-+|.++. .++.+............  ..............+...++...+   +.+-+++..++..+..+++.+.|++
T Consensus       256 lRiG~~i~-~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~  334 (409)
T PRK07590        256 TRCAYTVV-PKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSPEGKAQIKELIDYYMENAKIIREGLES  334 (409)
T ss_pred             ceeEEEEc-CHHHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33676665 33444311000000000  000000000001112222222222   2334455556666777888889988


Q ss_pred             CCCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhc-CcEEEEEEEE--CCEeEEEEE
Q 048438          153 DKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINAS-GKAYMTNVVL--GGIYAIRFA  229 (239)
Q Consensus       153 ~~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~--~g~~~lR~~  229 (239)
                      . ++++..+...+.+.+++++.-                     +  ...+.+.+.++ |.++......  .+..++|++
T Consensus       335 ~-~~~~~~~~g~~f~wi~~~~~~---------------------~--~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~  390 (409)
T PRK07590        335 A-GFEVYGGVNAPYIWVKTPDGM---------------------S--SWDFFDKLLQEANVVGTPGSGFGPSGEGYFRLS  390 (409)
T ss_pred             c-CCceecCCcceEEEEECCCCC---------------------C--HHHHHHHHHHHCCEEEeChhHhCCCCCCEEEEE
Confidence            6 777654445566666765421                     0  11455556544 4444433322  245699999


Q ss_pred             ec
Q 048438          230 TG  231 (239)
Q Consensus       230 ~~  231 (239)
                      +.
T Consensus       391 ~~  392 (409)
T PRK07590        391 AF  392 (409)
T ss_pred             cc
Confidence            53

>PRK14808 histidinol-phosphate aminotransferase; Provisional

Probab=98.14  E-value=0.00019  Score=61.44  Aligned_cols=182  Identities=11%  Similarity=0.053  Sum_probs=106.4

Q ss_pred             EEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-ccceEEE
Q 048438            6 LFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-LDCCCLW   84 (239)
Q Consensus         6 ~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~g~l~   84 (239)
                      .+|+.+.-+|.||.+.+.+++.+++ ++++++++|.++.-..  ...........+ -=+++.++.|.++.| .-+|+++
T Consensus       140 ~~i~i~nP~NPTG~~~s~~~l~~l~-~~~~~ii~DE~Y~~f~--~~~~~~~~~~~~-~vi~~~S~SK~~~l~GlRvG~~v  215 (335)
T PRK14808        140 DVVFIPNPNNPTGHVFEREEIERIL-KTGAFVALDEAYYEFH--GESYVDLLKKYE-NLAVIRTFSKAFSLAAQRIGYVV  215 (335)
T ss_pred             CEEEEeCCCCCCCCCcCHHHHHHHH-hcCCEEEEECchhhhc--CCchHHHHHhCC-CEEEEEechhhccCcccceEEEE
Confidence            4677888899999999999999999 5899999999986431  111111111111 124567999998744 3357766


Q ss_pred             eeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcCCCe
Q 048438           85 ATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHF  164 (239)
Q Consensus        85 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~~~~  164 (239)
                      . .++.+.......      ..+..  +. ........+++  ..+-+.+..+...+..+++.+.|++. |+++. +++.
T Consensus       216 ~-~~~~~~~l~~~~------~~~~~--~~-~~q~a~~~~l~--~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~-~~~g  281 (335)
T PRK14808        216 S-SEKFIDAYNRVR------LPFNV--SY-VSQMFAKVALD--HREIFEERTKFIVEERERMKSALREM-GYRIT-DSRG  281 (335)
T ss_pred             e-CHHHHHHHHHhc------CCCCC--CH-HHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEC-CCCC
Confidence            5 334433221100      00110  00 11111122232  12334555556666677888889886 77765 5577


Q ss_pred             eEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCC
Q 048438          165 AVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATL  234 (239)
Q Consensus       165 ~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~  234 (239)
                      +.+.+++++..                      .  ..+.++|.++|......     ..++|+++..+.
T Consensus       282 ~f~~~~l~~~~----------------------~--~~~~~~l~~~Gi~V~~~-----~~~~Risi~~~~  322 (335)
T PRK14808        282 NFVFIFMEKEE----------------------K--ERLLEHLRAKNIAVRSF-----REGVRITIGKRE  322 (335)
T ss_pred             eEEEEeCCCcc----------------------H--HHHHHHHHHCCeEEEEC-----CCCeEEecCCHH
Confidence            77777765321                      1  25667787777665432     247999988764

>PRK08636 aspartate aminotransferase; Provisional

Probab=98.13  E-value=0.00026  Score=62.10  Aligned_cols=197  Identities=13%  Similarity=0.064  Sum_probs=102.1

Q ss_pred             ccEEEEEecCCCCcccccCh---hHHHHHHHHhCCEEEEecccccccccCcccccccCCCC---CcceEEEcCcccCCCc
Q 048438            4 IPLFLCATIGTTAITAVDPL---KPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVE---GADSFSLNAHKWFFAT   77 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl---~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~---~~Ds~~~~~hK~l~~P   77 (239)
                      .+.+++.+..+|.||.+.+.   ++|+++|++|++++++|-+++-....-..... +..++   ..-.++.++.|.++.|
T Consensus       175 ~~~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~-~~~~~~~~~~~i~~~S~SK~~~~~  253 (403)
T PRK08636        175 KPKYVVVNFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPS-ILEVEGAKDVAVESYTLSKSYNMA  253 (403)
T ss_pred             CceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCC-hhcCCCccccEEEEEecccccCCc
Confidence            45677777778999998775   67788899999999999998744321100000 11121   1223467999998544


Q ss_pred             -ccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCe
Q 048438           78 -LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRF  156 (239)
Q Consensus        78 -~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~  156 (239)
                       .-+|+++. +++.+......    .....+.  .......+.. .+++. ..+-+++..+...+..+.+.+.|++. ++
T Consensus       254 GlRiG~iv~-~~~li~~~~~~----~~~~~~~--~~~~~q~~~~-~~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-~~  323 (403)
T PRK08636        254 GWRVGFVVG-NKKLVGALKKI----KSWLDYG--MFTPIQVAAT-IALDG-DQSCVEEIRETYRKRRDVLIESFANA-GW  323 (403)
T ss_pred             cceeeeeeC-CHHHHHHHHHH----HHHhccc--CChHHHHHHH-HHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHC-CC
Confidence             34666654 33333222100    0000000  0011111111 12221 22334445555567777788888875 67


Q ss_pred             EEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHh-cCcEEEEEEEE--CCEeEEEEEec
Q 048438          157 EVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINA-SGKAYMTNVVL--GGIYAIRFATG  231 (239)
Q Consensus       157 ~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~--~g~~~lR~~~~  231 (239)
                      ++..+.....+.+++++....             .     +  ...+.+.+.+ .|....+....  .+..++|+++.
T Consensus       324 ~~~~p~~g~~~~~~l~~~~~~-------------~-----~--~~~l~~~ll~~~gV~v~pg~~f~~~~~~~iRi~~~  381 (403)
T PRK08636        324 ELQKPRASMFVWAKIPEPARH-------------L-----G--SLEFSKQLLTEAKVAVSPGIGFGEYGDEYVRIALI  381 (403)
T ss_pred             cccCCCcceEEEEECCCccCC-------------C-----C--HHHHHHHHHHhCCEEEecchhhCcCCCCeEEEEec
Confidence            665444555666666532100             0     0  1245445443 45544443333  23579999986

>PRK07481 hypothetical protein; Provisional

Probab=98.12  E-value=0.00014  Score=64.85  Aligned_cols=141  Identities=11%  Similarity=-0.025  Sum_probs=76.9

Q ss_pred             ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcc-
Q 048438            4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATL-   78 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~-   78 (239)
                      .+.+|++--.....|.+-|    +++|.++|++||+.+++|..+.+.--...-+.....++. .|.+++  -|.+++-+ 
T Consensus       213 ~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~-PDiv~~--gKgl~gG~~  289 (449)
T PRK07481        213 TIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGSWFGSRGWGVK-PDIMCL--AKGITSGYV  289 (449)
T ss_pred             cEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCchhhHhhhcCCC-CCEEEE--eecccCCCc
Confidence            3556666666666777766    899999999999999999998754221111110123454 898887  68876532 


Q ss_pred             cceEEEeeCcccccccccCC--CCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC
Q 048438           79 DCCCLWATNPEYLKNKATES--KPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD  153 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~  153 (239)
                      ..|.+++++ ++........  ...+. ...+ ..+.+.......++|+.+..+   +..++..++.++|.+.|+++
T Consensus       290 Pi~av~~~~-~i~~~~~~~~~~~~~~~-h~~T-~~gnpl~~aaa~a~L~~l~~~---~l~~~~~~~g~~l~~~L~~l  360 (449)
T PRK07481        290 PLGATMVNA-RIADAFEANADFGGAIM-HGYT-YSGHPVACAAALATLDIVVRE---DLPANAAKRGAYLLEGLQPL  360 (449)
T ss_pred             CceEEEEcH-HHHHHHhccCccccccc-cCCC-CCCCHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHH
Confidence            356677654 3322211100  00000 0001 112222223333445554433   34455567788888888664

>PLN00144 acetylornithine transaminase

Probab=98.11  E-value=0.00035  Score=60.97  Aligned_cols=188  Identities=13%  Similarity=0.063  Sum_probs=95.3

Q ss_pred             cEEEEEecCCCCcccc--cC--hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438            5 PLFLCATIGTTAITAV--DP--LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC   80 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i--~p--l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~   80 (239)
                      +.+|++.-..+..|.+  ++  +++|.++|++||+++++|.+|++..-...-+.....++. .|  ..++.|.+++-...
T Consensus       168 ~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~-PD--i~t~sK~l~~G~pi  244 (382)
T PLN00144        168 TAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGVE-PD--IMTLAKPLAGGLPI  244 (382)
T ss_pred             eEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchHhhhhhcCCC-CC--EEEecccccCCcce
Confidence            4455555444443443  33  889999999999999999998754221111110123443 77  55568998755557


Q ss_pred             eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHh----CCCCe
Q 048438           81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVS----GDKRF  156 (239)
Q Consensus        81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~----~~~g~  156 (239)
                      |+++.+. ++.......      ....++ .+.+.......+.++.+....+.+++   .++.+++.+.|+    +.|.+
T Consensus       245 g~v~~~~-~~~~~~~~~------~~~~T~-~~~pl~~aaa~a~l~~i~~~~~~~~~---~~~g~~l~~~l~~~~~~~~~~  313 (382)
T PLN00144        245 GAVLVTE-KVASAINPG------DHGSTF-AGGPLVCNAALAVLDKISKPGFLASV---AKKGEYLRELLRRKLGGNPHV  313 (382)
T ss_pred             EEEEEcH-HHHhccCCC------CCCCCC-CCCHHHHHHHHHHHHHHhhchHHHHH---HHHHHHHHHHHHHHHhhCCCc
Confidence            7777643 333222110      000111 11222223333445665444444433   355555555544    33322


Q ss_pred             EEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCC
Q 048438          157 EVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLT  235 (239)
Q Consensus       157 ~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t  235 (239)
                      .-+.. .--++.+.+...                         ...+.+.+.++|..+.+.   ....++|+++..-.|
T Consensus       314 ~~vrg-~G~~~~l~l~~~-------------------------~~~~~~~~~~~Gv~i~~~---~~~~~lrl~p~~~~~  363 (382)
T PLN00144        314 KEVRG-VGLLVGIQLDVP-------------------------AGPLVDACRDSGLLVLTA---GKGDVVRLVPPLVIS  363 (382)
T ss_pred             eeeec-CceEEEEEecCc-------------------------cHHHHHHHHHCCeEEeec---CCCCEEEEeCCCccC
Confidence            11111 223444444211                         125667777788765542   113789999765444

>PRK06777 4-aminobutyrate aminotransferase; Provisional

Probab=98.11  E-value=0.0002  Score=63.34  Aligned_cols=194  Identities=12%  Similarity=0.041  Sum_probs=99.3

Q ss_pred             cEEEEEecCCCCccc-ccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438            5 PLFLCATIGTTAITA-VDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC   80 (239)
Q Consensus         5 p~~vv~t~gtt~~G~-i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~   80 (239)
                      ..+|++.-...+.|. +-|   +++|.++|++||+++++|.+|.+.......+.....++ ..|.+  ++.|.+++-...
T Consensus       199 iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~~~~~~~~~~-~pDiv--~~sK~l~~G~pi  275 (421)
T PRK06777        199 VAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLFAMEYYDV-KPDLI--TMAKSLGGGMPI  275 (421)
T ss_pred             eEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCchhhhhhcCC-CCCEE--eeehhhcCCCce
Confidence            455555555555665 344   89999999999999999999875322111011001233 37866  468988743446


Q ss_pred             eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC----CCe
Q 048438           81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD----KRF  156 (239)
Q Consensus        81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~----~g~  156 (239)
                      |.++.+ ++.........      ...++ ++.+........+|+.+..   ++..++..++.+++.+.|+++    +.+
T Consensus       276 gav~~~-~~i~~~~~~~~------~~~T~-~~~p~~~aaa~a~L~~~~~---~~l~~~~~~~g~~l~~~L~~l~~~~~~i  344 (421)
T PRK06777        276 SAVVGR-AEVMDAPAPGG------LGGTY-AGNPLAVAAALAVLDVIAE---EKLCQRALILGAHLVEVLEKAKASCPAI  344 (421)
T ss_pred             EEEEEc-HHHHhccCCCC------CCCCC-CcCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence            767664 33332221100      00111 1222222333334444433   345556667888888888764    322


Q ss_pred             EEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEec
Q 048438          157 EVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATG  231 (239)
Q Consensus       157 ~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~  231 (239)
                      .-+ .+.-.+..+.+..+..            ...+    .++...+.+.+.++|.+... .... ..++|+++-
T Consensus       345 ~~v-rg~G~~~~i~~~~~~~------------~~~~----~~~~~~l~~~~~~~Gv~i~~-~~~~-g~~lr~~pp  400 (421)
T PRK06777        345 VDI-RARGSMVAVEFNDPQT------------GKPS----PEFTRQYQRQALEEGLLLLS-CGVH-GNVIRFLYP  400 (421)
T ss_pred             EEe-cCceEEEEEEEecCcc------------CCcc----HHHHHHHHHHHHhCCeEEee-cCCC-CCEEEEeCC
Confidence            222 2333444444432110            0001    23455677777777765433 2211 258999853

>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=98.10  E-value=0.00014  Score=62.61  Aligned_cols=189  Identities=16%  Similarity=0.106  Sum_probs=106.9

Q ss_pred             EEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceE
Q 048438            7 FLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCC   82 (239)
Q Consensus         7 ~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~   82 (239)
                      +|++---.-+-|.+-|    ++++.++|++||+.+++|..|.+---...-+.....++. .|.++.  -|.|++-...|.
T Consensus       187 AvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~fA~e~~gV~-PDI~tl--aK~LgGG~PigA  263 (404)
T COG4992         187 AVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLFAYEHYGVE-PDILTL--AKALGGGFPIGA  263 (404)
T ss_pred             EEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccchHHHHHHhCCC-CCEEEe--eccccCCcccee
Confidence            4444444445666555    788999999999999999999864322221211133554 888875  588887777888


Q ss_pred             EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC-CeEEEcC
Q 048438           83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK-RFEVVFP  161 (239)
Q Consensus        83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~-g~~~~~~  161 (239)
                      ++.+ ..+........      + .+..+|.+.......++++.+..+++-+++   .++.++|.++|+++. .+.++.+
T Consensus       264 ~la~-~~~~~~~~~G~------H-gSTfGGNpLacAv~~a~l~~l~~e~ll~~v---~~~g~~~~~~L~~l~~~~~~v~~  332 (404)
T COG4992         264 MLAT-EEIASAFTPGD------H-GSTFGGNPLACAVALAVLEVLLEEGLLENV---REKGEYLLQRLRELKRRYPLVKE  332 (404)
T ss_pred             eEEc-hhhhhcCCCCc------c-cCCCCcCHHHHHHHHHHHHHHcchhHHHHH---HHHHHHHHHHHHHHhhcCCceee
Confidence            8876 33222211110      0 111233333333333456666666555544   488888888887752 2223333


Q ss_pred             C--CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCC
Q 048438          162 C--HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTE  236 (239)
Q Consensus       162 ~--~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~  236 (239)
                      .  .--++-..+.+..                       ....+.+.+.++|.+...    .+..++|+.+----|+
T Consensus       333 vRG~GLmiGiel~~~~-----------------------~a~~~~~~~~~~gvL~~~----a~~~ViR~~PpL~i~~  382 (404)
T COG4992         333 VRGRGLMIGIELKEPY-----------------------RARDIVRALREEGVLVLP----AGPNVIRFLPPLVITE  382 (404)
T ss_pred             eecceeEEEEEecCcc-----------------------cHHHHHHHHHHCCeEEec----CCCCeEEecCCccCCH
Confidence            2  1224555554420                       123666777778865443    2556999986544433

>PRK08297 L-lysine aminotransferase; Provisional

Probab=98.10  E-value=0.0002  Score=63.68  Aligned_cols=192  Identities=11%  Similarity=0.039  Sum_probs=99.1

Q ss_pred             ccEEEEEecCCCCcccc----cChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc
Q 048438            4 IPLFLCATIGTTAITAV----DPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD   79 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i----~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g   79 (239)
                      .+.+|++.-...+.|.+    .-+++|.++|++||+++++|..|.+.--...-+.....++. .|.+++  -|.+  |. 
T Consensus       225 ~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~-PDiv~~--gK~l--~~-  298 (443)
T PRK08297        225 DIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVR-PDIVAF--GKKT--QV-  298 (443)
T ss_pred             cEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCccchHHHHHhcCCC-CCEEEe--cccc--cc-
Confidence            45666666555666765    44899999999999999999998653121111110122443 898875  7886  32 


Q ss_pred             ceEEEeeCcc-ccc-ccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC----
Q 048438           80 CCCLWATNPE-YLK-NKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD----  153 (239)
Q Consensus        80 ~g~l~~~~~~-~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~----  153 (239)
                       |.+++++.- .+. ......  .  ....++ ++.+........+++.+..+   +..++..++.+++.++|+++    
T Consensus       299 -~a~l~~~~i~~~~~~~~~~~--~--~~~~T~-~gnpl~~aaa~a~L~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~  369 (443)
T PRK08297        299 -CGIMAGRRVDEVEDNVFAVS--S--RINSTW-GGNLVDMVRARRILEVIEED---GLVENAARQGEYLLARLEELAAEF  369 (443)
T ss_pred             -cceecchHHHHhhhhhccCc--c--ccCCCC-CccHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHC
Confidence             333343320 011 000000  0  000011 11111112222334444333   34555667778887777653    


Q ss_pred             CCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCC
Q 048438          154 KRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGAT  233 (239)
Q Consensus       154 ~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~  233 (239)
                      +.+-.-......++.+.+.+                       ......+.+.+.++|.++..    .+...+|+++.-.
T Consensus       370 ~~~~~~vrg~G~~~~i~~~~-----------------------~~~~~~~~~~l~~~Gvl~~~----~~~~~lr~~P~l~  422 (443)
T PRK08297        370 PAVVSNVRGRGLMCAFDLPT-----------------------TADRDEVIRRLWEEGVLVLP----CGERSIRFRPALT  422 (443)
T ss_pred             CCcceeeeccceEEEEEecC-----------------------HHHHHHHHHHHHHCCEEEec----CCCCeEEEECCcc
Confidence            22210001234566677643                       12334677788877766532    2446789987766


Q ss_pred             CCCc
Q 048438          234 LTEE  237 (239)
Q Consensus       234 ~t~~  237 (239)
                      .|++
T Consensus       423 ~t~~  426 (443)
T PRK08297        423 VTTE  426 (443)
T ss_pred             CCHH
Confidence            6554

>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=98.10  E-value=7.7e-05  Score=66.04  Aligned_cols=181  Identities=14%  Similarity=0.026  Sum_probs=92.9

Q ss_pred             ccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcc-cceEEEeeCcccccccccCC
Q 048438           20 VDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATL-DCCCLWATNPEYLKNKATES   98 (239)
Q Consensus        20 i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~-g~g~l~~~~~~~l~~~~~~~   98 (239)
                      ..++++|.++|++||+.+++|.+|.+.-....-+.....++. .|.++  .-|.+.+-. .++.++.+ ++.........
T Consensus       228 ~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~~~~~~~~~v~-pDi~~--~gK~l~gG~~p~~a~~~~-~~~~~~~~~~~  303 (427)
T TIGR00508       228 PTYLKRVQALCKQYDILLIADEIATGFGRTGKLFACEHAGVV-PDILC--VGKALTGGYMTLSATVTT-DKVAQTISSGE  303 (427)
T ss_pred             HHHHHHHHHHHHHcCCEEEEeccccCCCcCCccchhhhcCCC-CCEEE--echhhhcCcccceEEEEc-HHHHHHHhcCC
Confidence            467999999999999999999998542111111111123443 88877  489875432 34445543 23222111100


Q ss_pred             CCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcC--CCeeEEEEEEcCCCc
Q 048438           99 KPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFP--CHFAVVCFRVSPLPV  176 (239)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~--~~~~iv~f~~~~~~~  176 (239)
                      .... ....++ .+.+.......++++.+..+   +..++..++.++|.+.|+++.....+..  ....|+.+.+..+. 
T Consensus       304 ~~~~-~~~~T~-~g~p~~~aaa~a~l~~l~~~---~~~~~~~~~~~~l~~~L~~l~~~~~i~~vrg~G~~~~i~~~~~~-  377 (427)
T TIGR00508       304 AGCF-MHGPTF-MGNPLACAVAEASLAILLEG---EWQKQVSAIENQLKRELSPLRKNPVVKDVRVLGAIGVVEMYKPV-  377 (427)
T ss_pred             CCcc-ccCCCC-CcCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHhhcCCCEEeEeccccEEEEEECCcc-
Confidence            0000 000011 12223333334445544333   3456667888999998877522111211  12456666664321 


Q ss_pred             chhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCCc
Q 048438          177 LMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTEE  237 (239)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~  237 (239)
                                            ....+.++|.++|.+. ...   + ..+|+++.-..|++
T Consensus       378 ----------------------~~~~~~~~l~~~Gv~~-~~~---~-~~l~~~ppl~~t~~  411 (427)
T TIGR00508       378 ----------------------NVEELQKKFVEQGVWI-RPF---G-KLIYVMPPYIITTE  411 (427)
T ss_pred             ----------------------CHHHHHHHHHHCCeEE-Eec---C-CEEEEECCCCCCHH
Confidence                                  0135677788787554 321   2 36898866555544

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.

>PRK03317 histidinol-phosphate aminotransferase; Provisional

Probab=98.09  E-value=9.9e-05  Score=63.91  Aligned_cols=183  Identities=14%  Similarity=0.041  Sum_probs=100.9

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccC-cccccccCCCCCcc-eEEEcCcccCCCc-ccce
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIF-PEFRHFIDGVEGAD-SFSLNAHKWFFAT-LDCC   81 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~-~~~~~~~~~~~~~D-s~~~~~hK~l~~P-~g~g   81 (239)
                      +-+|+++.-.|.+|.+.+.+++.++++.+++++++|.+|+...... .........  .-+ +++.++.|.++.| .-+|
T Consensus       161 ~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~--~~~~i~~~SfSK~~g~~GlRiG  238 (368)
T PRK03317        161 PDVVFLTSPNNPTGTALPLDDVEAILDAAPGIVVVDEAYAEFRRSGTPSALTLLPE--YPRLVVSRTMSKAFAFAGGRLG  238 (368)
T ss_pred             CCEEEEeCCCCCCCCCCCHHHHHHHHHHCCceEEEeCCchhhcccCCcCHHHHHHh--CCCEEEEEechhhhccchhhhh
Confidence            3355566667999999999999999999999999999998532111 000001111  123 4556999998755 2245


Q ss_pred             EEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc
Q 048438           82 CLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYG-MENLRHFLRSHVNMARLFERLVSGDKRFEVVF  160 (239)
Q Consensus        82 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~  160 (239)
                      +++. +++.+.......      ..+.      ..++....+...+. .+.+.+.+++..+..+++.+.|++. |+++. 
T Consensus       239 ~~~~-~~~~~~~l~~~~------~~~~------~s~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-  303 (368)
T PRK03317        239 YLAA-APAVVDALRLVR------LPYH------LSAVTQAAARAALRHADELLASVAALRAERDRVVAWLREL-GLRVA-  303 (368)
T ss_pred             hhhC-CHHHHHHHHhcC------CCCC------CCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHC-CCEeC-
Confidence            5554 333333221100      0011      11222222222221 2344455566667777888888875 77754 


Q ss_pred             CCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecC
Q 048438          161 PCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGA  232 (239)
Q Consensus       161 ~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~  232 (239)
                      ++..+.+.|.-.+ .                        ...+.+.|.++|..+. .  .....++|++++.
T Consensus       304 ~~~~~~~~~~~~~-~------------------------~~~~~~~l~~~Gv~v~-~--~~~~~~iRi~~~~  347 (368)
T PRK03317        304 PSDANFVLFGRFA-D------------------------RHAVWQGLLDRGVLIR-D--VGIPGWLRVTIGT  347 (368)
T ss_pred             CCCCcEEEEeccC-C------------------------HHHHHHHHHHCCEEEE-e--CCCCCeEEEecCC
Confidence            4556655442111 1                        1256667777765543 2  2224689999763

>PRK05664 threonine-phosphate decarboxylase; Reviewed

Probab=98.09  E-value=0.00029  Score=60.14  Aligned_cols=177  Identities=13%  Similarity=0.080  Sum_probs=94.0

Q ss_pred             EEEEecCCCCcccccCh---hHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCc-c-eEEEcCcccCCCc-ccc
Q 048438            7 FLCATIGTTAITAVDPL---KPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGA-D-SFSLNAHKWFFAT-LDC   80 (239)
Q Consensus         7 ~vv~t~gtt~~G~i~pl---~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~-D-s~~~~~hK~l~~P-~g~   80 (239)
                      +++.+.-+|.||.+.+.   .+|+++|+++|+++++|.++.... +.+.    ...+..- . .++.++.|.++.| .-+
T Consensus       127 ~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~-~~~s----~~~~~~~~~vi~~~SfSK~~gl~GlRi  201 (330)
T PRK05664        127 VLVVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFMDNT-PQHS----LAACAHRPGLIVLRSFGKFFGLAGARL  201 (330)
T ss_pred             EEEEeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcccCC-Cccc----ccccccCCCEEEEeeccccccCCCcce
Confidence            35555667999998885   455566788999999999985332 1111    1111111 2 5688999998744 335


Q ss_pred             eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Q 048438           81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYG-MENLRHFLRSHVNMARLFERLVSGDKRFEVV  159 (239)
Q Consensus        81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~  159 (239)
                      |.++. .++++.......      ..+.      ........+...+. .+-.++..++..+..+++.+.|++. +++..
T Consensus       202 G~~v~-~~~l~~~~~~~~------~~~~------~~~~~~~~~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~-~~~~~  267 (330)
T PRK05664        202 GFVLA-EPALLRALAELL------GPWT------VSGPTRWLAQAALADTPWQRRQRERLLAASQRLAALLRRH-GLTPA  267 (330)
T ss_pred             EEEEe-CHHHHHHHHHhc------CCCC------CCHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHC-CCccc
Confidence            66665 334433322100      0011      11121122222221 1223444555666778888899876 65421


Q ss_pred             cCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecC
Q 048438          160 FPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGA  232 (239)
Q Consensus       160 ~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~  232 (239)
                       ....+.+.++.+  +                        ...+.+.|.++|.....   .....++|+++..
T Consensus       268 -~~~~~f~~~~~~--~------------------------~~~~~~~l~~~gi~v~~---f~~~~~iRis~~~  310 (330)
T PRK05664        268 -GGCALFQWVRTE--D------------------------AAALHEFLARRGILTRL---FEQPASLRFGLPA  310 (330)
T ss_pred             -CCcceEEEEecC--C------------------------HHHHHHHHHHCCeEEEE---CCCCCeEEEECCC
Confidence             112233333332  1                        12556667777766543   2234689999874

>PRK08354 putative aminotransferase; Provisional

Probab=98.07  E-value=0.00019  Score=60.72  Aligned_cols=73  Identities=11%  Similarity=-0.054  Sum_probs=48.6

Q ss_pred             EEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-ccceE
Q 048438            7 FLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-LDCCC   82 (239)
Q Consensus         7 ~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~g~   82 (239)
                      +++.+.-+|.||.+.+   +++|.++|+++|+|+++|.+++.....-.   . ..  ..--.++.++.|.++.| .-+|.
T Consensus       120 ~vi~~~P~NPTG~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~---~-~~--~~~vi~~~S~SK~~~l~GlRiG~  193 (311)
T PRK08354        120 VVFFCNPNNPDGKFYNFKELKPLLDAVEDRNALLILDEAFIDFVKKPE---S-PE--GENIIKLRTFTKSYGLPGIRVGY  193 (311)
T ss_pred             EEEEecCCCCCCCccCHHHHHHHHHHhhhcCcEEEEeCcchhcccccc---c-cC--CCcEEEEeccHhhcCCccceeee
Confidence            4666677899999877   56667778899999999999965432110   0 11  11235677999998755 23566


Q ss_pred             EEe
Q 048438           83 LWA   85 (239)
Q Consensus        83 l~~   85 (239)
                      ++.
T Consensus       194 ~v~  196 (311)
T PRK08354        194 VKG  196 (311)
T ss_pred             eee
Confidence            554

>PRK09440 avtA valine--pyruvate transaminase; Provisional

Probab=98.06  E-value=0.00017  Score=63.44  Aligned_cols=80  Identities=19%  Similarity=0.130  Sum_probs=48.8

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccce
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCC   81 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g   81 (239)
                      +.+++++.-+|.||.+.+   +++|+++|++|++++++|.+|+-..-... +.........-=++..|+.|.+..-.-+|
T Consensus       180 ~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~-~~~~~~~~~~~vI~~~SfSK~~~pGlRiG  258 (416)
T PRK09440        180 TGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPPFPGII-FSEATPLWNPNIILCMSLSKLGLPGVRCG  258 (416)
T ss_pred             ceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccccCCCcc-hhhcCccccCCeEEEecccccCCCcceEE
Confidence            356667777899999877   67788889999999999999963211000 00000000101145679999733333366


Q ss_pred             EEEe
Q 048438           82 CLWA   85 (239)
Q Consensus        82 ~l~~   85 (239)
                      +++.
T Consensus       259 ~~i~  262 (416)
T PRK09440        259 IVIA  262 (416)
T ss_pred             EEeC
Confidence            6554

>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

Probab=98.06  E-value=9.7e-05  Score=65.37  Aligned_cols=178  Identities=10%  Similarity=-0.021  Sum_probs=90.3

Q ss_pred             ChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-ccceEEEeeCcccccccccCCCC
Q 048438           22 PLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-LDCCCLWATNPEYLKNKATESKP  100 (239)
Q Consensus        22 pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~g~l~~~~~~~l~~~~~~~~~  100 (239)
                      .+++|.++|++||+++++|.+|.+.--...-+.....++. .|.++  +-|.+++- ..+|+++.++ +...........
T Consensus       227 ~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~~fa~~~~gv~-PDi~t--~gK~l~gG~~p~~av~~~~-~i~~~~~~~~~~  302 (428)
T PRK07986        227 WLKRVRKLCDREGILLIADEIATGFGRTGKLFACEHAGIA-PDILC--LGKALTGGTMTLSATLTTR-EVAETISNGEAG  302 (428)
T ss_pred             HHHHHHHHHHHcCCEEEEeccccCCccCCCeeeecccCCC-CCEEE--echhhhCCcccCcchhchH-HHHHHhhcCCCC
Confidence            3899999999999999999998553111111110123443 78886  57887543 2344455433 222211110000


Q ss_pred             ccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcCC--CeeEEEEEEcCCCcch
Q 048438          101 VVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPC--HFAVVCFRVSPLPVLM  178 (239)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~~--~~~iv~f~~~~~~~~~  178 (239)
                      .+ ....++. +.+........+++.+..+   +..++..++.++|.+.|+++.....+.+.  ...++.+.+..+.   
T Consensus       303 ~~-~~~~T~~-g~p~~~aaa~a~L~~i~~~---~~~~~~~~~g~~l~~~l~~l~~~~~i~~vRg~Gl~~~ve~~~~~---  374 (428)
T PRK07986        303 CF-MHGPTFM-GNPLACAVANASLSLLESG---DWQQQVAAIEAQLREELAPLRDAPMVADVRVLGAIGVVETTRPV---  374 (428)
T ss_pred             cc-ccCCCCC-cCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHhcCCCEEeEeccceEEEEEeCCcc---
Confidence            00 0001111 2222333344455555333   34556668888888888764222222221  1235555554321   


Q ss_pred             hhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCC
Q 048438          179 DKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTE  236 (239)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~  236 (239)
                                          ....+.+.+.++|.+...    .| .++|+++---.|+
T Consensus       375 --------------------~~~~~~~~l~~~Gl~~~~----~g-~~i~~~Ppl~it~  407 (428)
T PRK07986        375 --------------------NMAALQRFFVEQGVWIRP----FG-KLIYLMPPYIILP  407 (428)
T ss_pred             --------------------cHHHHHHHHHHCCcEEEe----cC-CEEEEeCCCCCCH
Confidence                                123677778888876432    13 4789875544443

>PRK07495 4-aminobutyrate aminotransferase; Provisional

Probab=98.06  E-value=0.00022  Score=63.08  Aligned_cols=200  Identities=12%  Similarity=0.007  Sum_probs=99.8

Q ss_pred             cEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438            5 PLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC   80 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~   80 (239)
                      +.+|++.-...+.|.+.|    +++|.++|++||+++++|.+|.+.-....-+.....++ ..|.++  +.|.+++-...
T Consensus       199 iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~a~~~~gv-~pDi~t--lsK~l~~G~pi  275 (425)
T PRK07495        199 VAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKLFAMEHHEV-AADLTT--MAKGLAGGFPL  275 (425)
T ss_pred             eEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCCceeecccCC-CCCEEe--ehhhhcCCccc
Confidence            455665555555675543    89999999999999999999875322111111011233 267655  47988754556


Q ss_pred             eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC-CeEEE
Q 048438           81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK-RFEVV  159 (239)
Q Consensus        81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~-g~~~~  159 (239)
                      |.+..++ ++.......   .   ...++ .+.+.......++++.+..++   ..++..++.+++.++|+++. .+..+
T Consensus       276 gav~~~~-~i~~~~~~~---~---~~~T~-~~~pl~~aaa~a~l~~l~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~i  344 (425)
T PRK07495        276 AAVTGRA-EIMDAPGPG---G---LGGTY-GGNPLGIAAAHAVLDVIEEED---LCERANQLGNRLKQRLASLRETVPEI  344 (425)
T ss_pred             eEEEEcH-HHHhccCCC---C---cCCCC-CCCHHHHHHHHHHHHHHHhch---HHHHHHHHHHHHHHHHHHHHhhCCCe
Confidence            7776643 333222110   0   00111 122222233334555554433   34445567777777775431 11111


Q ss_pred             cC--CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCC
Q 048438          160 FP--CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTE  236 (239)
Q Consensus       160 ~~--~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~  236 (239)
                      ..  ..--++.+.+.+....             .+   .......+.+.+.++|.+... ... +..++|+.+---.|+
T Consensus       345 ~~vrG~Gl~~~iel~~~~~~-------------~~---~~~~~~~~~~~~~~~Gvl~~~-~g~-~~~~~r~~Ppl~it~  405 (425)
T PRK07495        345 ADIRGPGFMNAVEFNDADSG-------------LP---SAEFANRVRLKALEKGLILLT-CGV-HGNVIRFLAPITIQD  405 (425)
T ss_pred             eeeecCceEEEEEEecCCCC-------------Cc---cHHHHHHHHHHHHHCCeEEee-cCC-CCCEEEEeCCCccCH
Confidence            11  1123455555432100             00   012345677788888866532 111 236789986544443

>PRK09792 4-aminobutyrate transaminase; Provisional

Probab=98.04  E-value=0.0006  Score=60.30  Aligned_cols=202  Identities=10%  Similarity=-0.002  Sum_probs=105.2

Q ss_pred             ccEEEEEecCCCCccccc-C---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc
Q 048438            4 IPLFLCATIGTTAITAVD-P---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD   79 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~-p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g   79 (239)
                      .+.+|++.-.....|... |   +++|.++|++||+++++|..+.+.......+.....++ ..|.+  ++.|.+++-..
T Consensus       198 ~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~~-~pDi~--t~gK~l~~G~p  274 (421)
T PRK09792        198 QVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYAD-KPDLM--TMAKSLAGGMP  274 (421)
T ss_pred             ceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHhcCC-CCcEE--EeehhhcCCCc
Confidence            456777776677778654 6   89999999999999999999876422211111001122 37854  55899876455


Q ss_pred             ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC-CeEE
Q 048438           80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK-RFEV  158 (239)
Q Consensus        80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~-g~~~  158 (239)
                      .|.++.+ +++.......  .    ...++ .+.+.......+.++.+..+   +.+++..++.+++.+.|+++. .+..
T Consensus       275 igav~~~-~~i~~~~~~~--~----~~~T~-~gnpl~~aaa~a~l~~l~~~---~~~~~~~~~g~~l~~~l~~l~~~~p~  343 (421)
T PRK09792        275 LSGVVGN-ANIMDAPAPG--G----LGGTY-AGNPLAVAAAHAVLNIIDKE---SLCERANQLGQRLKNTLIDAKESVPA  343 (421)
T ss_pred             eEEEEEc-HHHHhccCCC--C----cCCCC-CCCHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            7776663 3333222110  0    00111 11122222223445555333   344555577777777765431 1111


Q ss_pred             EcCC-C-eeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCC
Q 048438          159 VFPC-H-FAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTE  236 (239)
Q Consensus       159 ~~~~-~-~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~  236 (239)
                      +..+ . -.++.+.+++....             .+.   ......+.+.+.++|.++.. . -....++|+.+..-.|+
T Consensus       344 v~~vrG~Gl~~~ie~~~~~~~-------------~~~---~~~~~~l~~~~~~~Gv~i~~-~-g~~~~~irl~P~l~i~~  405 (421)
T PRK09792        344 IAAVRGLGSMIAAEFNDPQTG-------------EPS---AAIAQKIQQRALAQGLLLLT-C-GAYGNVIRFLYPLTIPD  405 (421)
T ss_pred             cceecccceEEEEEecCCccC-------------Ccc---hHHHHHHHHHHHHCCcEEee-c-CCCCCEEEEeCCCcCCH
Confidence            2222 2 23555666432100             000   12345778888888876531 1 11247899986654444


Q ss_pred             c
Q 048438          237 E  237 (239)
Q Consensus       237 ~  237 (239)
                      +
T Consensus       406 ~  406 (421)
T PRK09792        406 A  406 (421)
T ss_pred             H
Confidence            3

>PRK06082 4-aminobutyrate aminotransferase; Provisional

Probab=98.03  E-value=0.00023  Score=63.56  Aligned_cols=197  Identities=12%  Similarity=0.065  Sum_probs=99.8

Q ss_pred             EEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcc-cce
Q 048438            6 LFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATL-DCC   81 (239)
Q Consensus         6 ~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~-g~g   81 (239)
                      .+|++--...+.+.+-|   +++|.++|++||+.+++|.+|.+.--...-+.....++. .|.++  .-|.+++-+ ..|
T Consensus       231 AavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~fa~e~~gv~-PDiv~--~gKgl~gG~~P~~  307 (459)
T PRK06082        231 GAFIAEAVRNTDVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWFTHQAYGIE-PDILC--IGKGLGGGLVPIA  307 (459)
T ss_pred             EEEEECCccCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHhHhhCCC-CCEEE--ecccccCCCCcce
Confidence            34444333333233445   899999999999999999998753221111111123553 89887  589987642 466


Q ss_pred             EEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC-CeEEEc
Q 048438           82 CLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK-RFEVVF  160 (239)
Q Consensus        82 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~-g~~~~~  160 (239)
                      .++.++ ++. .....   ..  ...++ .+.+.......+.++.+..+   +..++..++.++|.+.|+++. ...++.
T Consensus       308 av~~~~-~i~-~~~~~---~~--~~~T~-~gnpl~~aaa~a~L~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~i~  376 (459)
T PRK06082        308 AMITKD-KYN-TAAQI---SL--GHYTH-EKSPLGCAAALATIEVIEQE---GLLEKVKADSQFMRERLLEMKAKYPLIG  376 (459)
T ss_pred             EEEEcH-HHH-hhccC---CC--CCCCC-CcCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHhhCCCee
Confidence            676654 222 11100   00  00111 12222223333445544333   355566688888888887641 122222


Q ss_pred             CC--CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCC
Q 048438          161 PC--HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLT  235 (239)
Q Consensus       161 ~~--~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t  235 (239)
                      ..  .-.++.+.+.....               ......+....+...+.++|.++..    .+..++|+++---.|
T Consensus       377 ~vrG~Gl~~~ve~~~~~~---------------~~~~~~~~~~~~~~~~~~~Gvl~~~----~~~~~i~~~Ppl~it  434 (459)
T PRK06082        377 DVRGIGLLWGVELVTDRH---------------TKERAYDEAEAVLYRCLNNGLSFKV----SQGNVIQLSPPLIIT  434 (459)
T ss_pred             eeeeccceeEEEEccCcc---------------ccCccHHHHHHHHHHHHhCCCEEEe----cCCCEEEEeCCCccC
Confidence            21  12345555532110               0000012344677778888876543    234678887543333

>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=98.03  E-value=0.00019  Score=63.58  Aligned_cols=79  Identities=14%  Similarity=-0.025  Sum_probs=51.7

Q ss_pred             ccEEEEEecCCCCcccccChh----HHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc
Q 048438            4 IPLFLCATIGTTAITAVDPLK----PLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD   79 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~----~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g   79 (239)
                      .+.+|++--...+.|.+-|.+    +|.++|++||+.+++|.+|.+. -....+.....++. .|.++  +-|.+++-..
T Consensus       201 ~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~-R~G~~ga~~~~gv~-PDi~~--~gK~lggG~p  276 (433)
T PRK00615        201 RVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGF-RVAQGGAAAIYHVK-PDITV--YGKILGGGLP  276 (433)
T ss_pred             ceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccccc-cccHhHHHHhcCCC-CCeEE--EcccccCCcc
Confidence            345666666667778888854    9999999999999999999543 11111110123443 88876  5898874333


Q ss_pred             ceEEEee
Q 048438           80 CCCLWAT   86 (239)
Q Consensus        80 ~g~l~~~   86 (239)
                      .|++..+
T Consensus       277 ~~av~~~  283 (433)
T PRK00615        277 AAAVVAH  283 (433)
T ss_pred             eeeeeec
Confidence            5666654

>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases

Probab=98.02  E-value=0.00022  Score=63.46  Aligned_cols=207  Identities=11%  Similarity=-0.016  Sum_probs=105.0

Q ss_pred             cEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438            5 PLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC   80 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~   80 (239)
                      ..+|++.-.....|.+.|    +++|.++|++||+++++|..+.+.--...-+.....++. .|.++  .-|.+++-...
T Consensus       207 iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~-PDiv~--~gK~l~~G~Pi  283 (442)
T TIGR00709       207 PAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGTMFAFEHAGIE-PDFVV--MSKAVGGGLPL  283 (442)
T ss_pred             eEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHHcCCC-CcEEE--EcccccCCccc
Confidence            345555555555566543    899999999999999999998754322221111123443 89888  47888765557


Q ss_pred             eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC-CeEEE
Q 048438           81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK-RFEVV  159 (239)
Q Consensus        81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~-g~~~~  159 (239)
                      |.++.++ ++ ......      ....+ ..+.+.......++++.+..++   ..++..++.++|.+.|+++. ...++
T Consensus       284 gav~~~~-~~-~~~~~~------~~~~T-~~gnpla~aaa~a~L~~i~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~v  351 (442)
T TIGR00709       284 AVLLIAP-EF-DAWQPA------GHTGT-FRGNQLAMVTGTEALNYWKDDN---LAQNAQERGERITSFLDDMIKEHPCI  351 (442)
T ss_pred             EEEEEch-HH-hccCCC------cCCCC-CCcCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence            7777754 32 211100      00011 1122222333334455444433   34455577788887776531 22222


Q ss_pred             cCC--CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCCc
Q 048438          160 FPC--HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTEE  237 (239)
Q Consensus       160 ~~~--~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~  237 (239)
                      .+.  .--++.+.+......         .+..............+...+.++|.+.. .... +..++|+.+.--.|++
T Consensus       352 ~~vrG~Gl~~~ie~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~-~~~~-~~~~l~~~Ppl~it~~  420 (442)
T TIGR00709       352 GNVRGRGLMQGIMIVDERQS---------KDATGAYPRDCELAAAIQGACFENGLLLE-TGGR-EGEVFRLLCPITIDQE  420 (442)
T ss_pred             eeeeccceEEEEEEccCccc---------ccccccCCcchHHHHHHHHHHHHCCeEEe-ecCC-CCCEEEEECCCCCCHH
Confidence            222  223555555321100         00000000001344567777887876543 2211 2468898866555544

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.

>PRK02610 histidinol-phosphate aminotransferase; Provisional

Probab=98.01  E-value=0.00036  Score=60.64  Aligned_cols=184  Identities=11%  Similarity=0.003  Sum_probs=99.1

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHH-HhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-ccce
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAK-QFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-LDCC   81 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~-~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~g   81 (239)
                      .+-+|+++.-+|.||.+.+.+++.++++ .+++++++|.++.-.... .... .+.... -=.+..|+.|.++.| .-+|
T Consensus       168 ~~k~i~l~~P~NPTG~~~s~~~l~~l~~~~~~~~iI~De~Y~~~~~~-~~~~-~~~~~~-~~ivi~SfSK~~g~~GlRiG  244 (374)
T PRK02610        168 PVRVVFVVHPNSPTGNPLTAAELEWLRSLPEDILVVIDEAYFEFSQT-TLVG-ELAQHP-NWVILRTFSKAFRLAAHRVG  244 (374)
T ss_pred             CceEEEEeCCCCCCCCCCCHHHHHHHHhccCCcEEEEeccccccCcc-chHH-HHhcCC-CEEEEEecchhccCccccee
Confidence            4556766677899999988877766653 248999999998643211 0000 011111 114578999998555 3366


Q ss_pred             EEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc
Q 048438           82 CLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYG-MENLRHFLRSHVNMARLFERLVSGDKRFEVVF  160 (239)
Q Consensus        82 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~  160 (239)
                      +++. ++..+.......      ..+..      .++...++...++ .+.+.+.+++..+..+++.+.|++++++.+. 
T Consensus       245 ~~v~-~~~l~~~l~~~~------~~~~~------~~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~-  310 (374)
T PRK02610        245 YAIG-HPELIAVLEKVR------LPYNL------PSFSQLAAQLALEHRQELLAAIPEILQERDRLYQALQELPQLRVW-  310 (374)
T ss_pred             eeec-CHHHHHHHHHhc------CCCCC------CHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCcEeC-
Confidence            6654 333333221100      00110      1122222222222 2333444444455566777888877787753 


Q ss_pred             CCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecC
Q 048438          161 PCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGA  232 (239)
Q Consensus       161 ~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~  232 (239)
                      +...+-+.++++...                +       ...+.+.|.++|..+..     +..++|+++..
T Consensus       311 p~~g~f~~~~l~~~~----------------~-------~~~~~~~l~~~gi~v~~-----~~~~lRls~~~  354 (374)
T PRK02610        311 PSAANFLYLRLSQDA----------------A-------LAALHQALKAQGTLVRH-----TGGGLRITIGT  354 (374)
T ss_pred             CCcceEEEEeCCCCC----------------C-------HHHHHHHHHHCCEEEEe-----CCCeEEEeCCC
Confidence            556666666665321                0       12455666666665432     34579999775

>PRK06959 putative threonine-phosphate decarboxylase; Provisional

Probab=98.01  E-value=0.00045  Score=59.27  Aligned_cols=177  Identities=13%  Similarity=0.041  Sum_probs=96.5

Q ss_pred             EEEEecCCCCcccccChhHHHHH---HHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-ccceE
Q 048438            7 FLCATIGTTAITAVDPLKPLCDV---AKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-LDCCC   82 (239)
Q Consensus         7 ~vv~t~gtt~~G~i~pl~~i~~i---~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~g~   82 (239)
                      +++.+.-+|.||.+.+.+++.++   |++++.++++|.++.-... .+...... .-+. =.+..++.|.++.| .=+|.
T Consensus       133 ~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~-~~s~~~~~-~~~~-vi~l~SfSK~~gl~GlRiGy  209 (339)
T PRK06959        133 HLIVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFADTLP-AASLAAHT-DRPG-LVVLRSVGKFFGLAGVRAGF  209 (339)
T ss_pred             EEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCccCCC-cccchhcc-CCCC-EEEEecChhhcCCcchheEE
Confidence            45566668999999887776665   5578999999999875421 11111111 1011 15677999998644 33566


Q ss_pred             EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHhCCCCeEEEcC
Q 048438           83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGME-NLRHFLRSHVNMARLFERLVSGDKRFEVVFP  161 (239)
Q Consensus        83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~  161 (239)
                      ++. .++.+.......      ..|.      ...+....+...+... -.++..++..+..+++.+.|++. |+++.  
T Consensus       210 ~v~-~~~li~~l~~~~------~~~~------vs~~~q~a~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~--  273 (339)
T PRK06959        210 VLA-APALLAALRDAL------GAWT------VSGPARHAVRAAFADAAWQAAMRERLAADGARLAALLRAH-GFAVH--  273 (339)
T ss_pred             Eec-CHHHHHHHHHhc------CCCC------CcHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC-CCCcc--
Confidence            665 344443322100      0111      1122222233333222 23344555666778888999886 77654  


Q ss_pred             CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEec
Q 048438          162 CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATG  231 (239)
Q Consensus       162 ~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~  231 (239)
                      +..+.+.+++++                          ...+.+.|.++|.....   .....++|+++.
T Consensus       274 ~~~~f~~~~~~~--------------------------~~~l~~~l~~~GI~vr~---~~~~~~lRisi~  314 (339)
T PRK06959        274 ATPLFSWTDDPR--------------------------AAALHAALARRGIWTRY---FAPPPSVRFGLP  314 (339)
T ss_pred             CcceEEEEeCCC--------------------------HHHHHHHHHhCCeEEEE---CCCCCeEEEECC
Confidence            223333333321                          12567778778766432   233458999974

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=98.00  E-value=0.00011  Score=65.13  Aligned_cols=158  Identities=11%  Similarity=0.010  Sum_probs=82.1

Q ss_pred             ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc
Q 048438            4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD   79 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g   79 (239)
                      ...+|++.....+.|.+-|    +++|.++|++||+++++|.+|.+. .....+.....++ ..|.+  ++.|.+++-..
T Consensus       197 ~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~-r~g~~~~~~~~~~-~pDi~--~~gK~l~~G~p  272 (426)
T PRK00062        197 EIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGF-RVALGGAQGYYGV-TPDLT--TLGKIIGGGLP  272 (426)
T ss_pred             cEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhcc-ccCCccHHHHhCC-CcchH--hhhhHhhCCCc
Confidence            3456666666777899988    999999999999999999999754 2111110011222 25654  45799875333


Q ss_pred             ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC---CCe
Q 048438           80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD---KRF  156 (239)
Q Consensus        80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~---~g~  156 (239)
                      .|++..+ ++......... ...   ..+..++.+........+++.+..+   +..++..++.+++++.|++.   -++
T Consensus       273 ~ga~~~~-~~i~~~~~~~~-~~~---~~~T~~~~p~~~aaa~a~L~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~  344 (426)
T PRK00062        273 VGAFGGR-REIMEQLAPLG-PVY---QAGTLSGNPLAMAAGLATLKLLKEP---GFYEELEALTKRLAEGLKEAAKKAGI  344 (426)
T ss_pred             ceeeeEH-HHHHHhhccCC-Cce---ecccCcCCHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            5666543 33332221000 000   0011112222233334445554333   34455556777777776532   133


Q ss_pred             EEEcCCCeeEEEEEEcC
Q 048438          157 EVVFPCHFAVVCFRVSP  173 (239)
Q Consensus       157 ~~~~~~~~~iv~f~~~~  173 (239)
                      ..-......++.+.+.+
T Consensus       345 ~~~vrg~G~~~~i~l~~  361 (426)
T PRK00062        345 PLTVNRVGSMFGLFFTD  361 (426)
T ss_pred             ceEEEEecceEEEEEec
Confidence            22112334566666643

>PRK06149 hypothetical protein; Provisional

Probab=98.00  E-value=0.00026  Score=68.83  Aligned_cols=204  Identities=9%  Similarity=-0.059  Sum_probs=106.1

Q ss_pred             CccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCccc-ccccCCCCCcceEEEcCcccCCCc
Q 048438            3 LIPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEF-RHFIDGVEGADSFSLNAHKWFFAT   77 (239)
Q Consensus         3 ~~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~-~~~~~~~~~~Ds~~~~~hK~l~~P   77 (239)
                      ..+.+|++--...+.|.+-|    +++|.++|++||+.+++|.+|.+.--....+ .....++. .|.+++  -|.+++-
T Consensus       743 ~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv~-PDivt~--gK~lg~G  819 (972)
T PRK06149        743 RGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQGVV-PDIITM--AKGMGNG  819 (972)
T ss_pred             CceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccchhhhhcCCC-CCEEEe--cccccCC
Confidence            34566666666666788888    9999999999999999999994331212111 00023553 898865  7988764


Q ss_pred             ccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC-Ce
Q 048438           78 LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK-RF  156 (239)
Q Consensus        78 ~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~-g~  156 (239)
                      ...|++..++ +........ ....    .+. ++.+.......+.|+.+..++   ..++..++.++|++.|+++. ..
T Consensus       820 ~Pl~av~~~~-~i~~~~~~~-~~~~----sT~-~gnP~~~aaala~L~~i~~e~---l~~~~~~~G~~l~~~L~~l~~~~  889 (972)
T PRK06149        820 HPLGAVITRR-EIAEALEAE-GYFF----SST-GGSPVSCRIGMAVLDVLREEK---LQENARRVGDHLKARLEALADRH  889 (972)
T ss_pred             eeeEEEEEcH-HHHhhhccC-Cccc----CCC-CCCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHhC
Confidence            5567777754 332211110 0000    011 222333333334455554443   44455577788888876531 11


Q ss_pred             EEEcCC--CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCC
Q 048438          157 EVVFPC--HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATL  234 (239)
Q Consensus       157 ~~~~~~--~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~  234 (239)
                      .++...  .--++.+.+......           ...+    .+....+.++|.++|.++.. ... ...+||+.+---.
T Consensus       890 ~~i~~vrG~Gl~~gvel~~~~~~-----------~~~~----~~~~~~i~~~l~~~Gvl~~~-~g~-~~~vl~~~Ppl~i  952 (972)
T PRK06149        890 PLIGAVHGMGLYLGVELVRDRQT-----------LEPA----TEETAAICDRLLELGVIMQP-TGD-HLNILKIKPPLCL  952 (972)
T ss_pred             CCeEEEeecceEEEEEEecCccc-----------CCCC----hHHHHHHHHHHHhCCeEEee-cCC-CCCEEEEECCCcC
Confidence            122211  122444544321000           0001    12345778888888766432 211 1367888754334


Q ss_pred             CC
Q 048438          235 TE  236 (239)
Q Consensus       235 t~  236 (239)
                      |+
T Consensus       953 t~  954 (972)
T PRK06149        953 DR  954 (972)
T ss_pred             CH
Confidence            33

>PRK12403 putative aminotransferase; Provisional

Probab=98.00  E-value=0.0004  Score=62.12  Aligned_cols=79  Identities=18%  Similarity=0.076  Sum_probs=53.3

Q ss_pred             cEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcc-c
Q 048438            5 PLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATL-D   79 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~-g   79 (239)
                      ..+|++--...+.|.+.|    +++|.++|++||+.+++|.+|++.--...-+.....++. .|.++  .-|.+++-+ .
T Consensus       223 iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~e~~gv~-PDiv~--~gK~lggG~~P  299 (460)
T PRK12403        223 VAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGEWFAHEHFGFE-PDTLS--IAKGLTSGYVP  299 (460)
T ss_pred             eEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhhhhhcCCC-CCeEE--Ecccccccccc
Confidence            456666666677788888    999999999999999999999653221211111123554 79887  579887432 4


Q ss_pred             ceEEEee
Q 048438           80 CCCLWAT   86 (239)
Q Consensus        80 ~g~l~~~   86 (239)
                      .|.++.+
T Consensus       300 iga~v~~  306 (460)
T PRK12403        300 MGGLVLS  306 (460)
T ss_pred             eEEEEEC
Confidence            5666664

>PRK07482 hypothetical protein; Provisional

Probab=97.97  E-value=0.0003  Score=62.93  Aligned_cols=208  Identities=12%  Similarity=0.038  Sum_probs=102.1

Q ss_pred             cEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcc-c
Q 048438            5 PLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATL-D   79 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~-g   79 (239)
                      ..+|++--.....|.+-|    +++|.++|++||+.+++|..+.+.--....+.....++. .|.+++  -|.+++-+ .
T Consensus       221 iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~~~~gv~-PDiv~~--gKgl~gG~~P  297 (461)
T PRK07482        221 IAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGSMFGSDHYGIE-PDLITV--AKGLTSAYAP  297 (461)
T ss_pred             EEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCcchhhHHhcCCC-CCEEEE--ccccccCccc
Confidence            455555555555566644    789999999999999999998764222221111133554 999986  68886532 3


Q ss_pred             ceEEEeeCcccccccccCC--CCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC-CCe
Q 048438           80 CCCLWATNPEYLKNKATES--KPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD-KRF  156 (239)
Q Consensus        80 ~g~l~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~-~g~  156 (239)
                      .|.+++++ ++........  ...+. ...++ .+.+.......++++.+..++   ..++..++.+++.+.|+++ ...
T Consensus       298 i~av~~~~-~i~~~~~~~~~~~~~~~-h~~T~-~gnpl~~Aaa~a~L~~~~~~~---l~~~~~~~g~~l~~~L~~l~~~~  371 (461)
T PRK07482        298 LSGSIVGE-KVWDVLEQGSDEHGAIG-HGWTY-SGHPICAAAALANLDILEREN---LVGNAAEVGAYFRARLRAAFGDH  371 (461)
T ss_pred             cceeeecH-HHHHHHhcccccCCccc-cCCCC-CcCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHhcC
Confidence            55666643 2221111000  00000 00111 122222233334455554443   3444557777887777642 111


Q ss_pred             EEEcC--CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCC
Q 048438          157 EVVFP--CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATL  234 (239)
Q Consensus       157 ~~~~~--~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~  234 (239)
                      .++..  -.-.++.+.+......         .   .+.+....+...+.+.+.++|.+...   ..+...+|+.+.--.
T Consensus       372 ~~v~~vrG~Glm~giel~~~~~~---------~---~~~~~~~~~~~~i~~~~~~~Gvl~~~---~~~~~~i~~~Ppl~i  436 (461)
T PRK07482        372 PLVGEVRGVGMLAAVEFVADRDD---------R---TPFDPALKIGPQVSAAALERGVIARA---MPHGDILGFAPPLVL  436 (461)
T ss_pred             CCEEEEeeceeEEEEEeccCCCc---------C---CCCChhhHHHHHHHHHHHHCCcEEec---CCCCCEEEEeCCCCC
Confidence            11211  1123445555321100         0   00000023445788888888865422   112357888755444


Q ss_pred             CC
Q 048438          235 TE  236 (239)
Q Consensus       235 t~  236 (239)
                      |+
T Consensus       437 t~  438 (461)
T PRK07482        437 TR  438 (461)
T ss_pred             CH
Confidence            43

>PLN02231 alanine transaminase

Probab=97.96  E-value=0.00098  Score=60.70  Aligned_cols=157  Identities=15%  Similarity=0.113  Sum_probs=81.9

Q ss_pred             ccEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEeccccccccc-Ccc---cccccC--CC--CCcceEE-EcCc
Q 048438            4 IPLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACI-FPE---FRHFID--GV--EGADSFS-LNAH   71 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~-~~~---~~~~~~--~~--~~~Ds~~-~~~h   71 (239)
                      .|-+|+++.-.|.||.+.+   +++|+++|++||++++.|.+|.-.... -..   ......  +.  .....++ .|+.
T Consensus       271 ~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~S  350 (534)
T PLN02231        271 TVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVS  350 (534)
T ss_pred             CeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcccHHHHHhhhccccCCceEEEEeccC
Confidence            4556666667899999865   677888999999999999998754321 011   111110  11  0122444 4999


Q ss_pred             ccCCC-c-ccceEEEee--CcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHH--hCHHHH-------HHHHHH
Q 048438           72 KWFFA-T-LDCCCLWAT--NPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRN--YGMENL-------RHFLRS  138 (239)
Q Consensus        72 K~l~~-P-~g~g~l~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~g~~g~-------~~~~~~  138 (239)
                      |.+++ | .-+|.+.+.  +++.+.......  ..     .. ++..........+++.  .|...+       .+..+.
T Consensus       351 K~~~g~pGlRiGy~~~~~~~~~l~~~l~k~~--~~-----~~-~s~~~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i~~~  422 (534)
T PLN02231        351 KGYYGECGKRGGYMEVTGFTSDVREQIYKVA--SV-----NL-CSNISGQILASLVMSPPKPGDESYESYMAEKDGILSS  422 (534)
T ss_pred             cccccCCccceEEEEEecCCHHHHHHHHHHH--hh-----hc-CCChHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHH
Confidence            97643 2 336666542  233332221000  00     00 1111111111112210  011111       223455


Q ss_pred             HHHHHHHHHHHHhCCCCeEEEcCCCeeEEEE
Q 048438          139 HVNMARLFERLVSGDKRFEVVFPCHFAVVCF  169 (239)
Q Consensus       139 ~~~la~~l~~~l~~~~g~~~~~~~~~~iv~f  169 (239)
                      ..+.++.+.+.|++.+|+++. +|+.++..|
T Consensus       423 ~~~r~~~l~~~L~~~~gi~~~-~p~Ggfylw  452 (534)
T PLN02231        423 LARRAKTLEDALNSLEGVTCN-KAEGAMYLF  452 (534)
T ss_pred             HHHHHHHHHHHHhcCCCceec-CCCeeeEEe
Confidence            667788899999988888865 566666666

>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=97.96  E-value=0.0004  Score=61.56  Aligned_cols=137  Identities=14%  Similarity=0.062  Sum_probs=78.4

Q ss_pred             ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc
Q 048438            4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD   79 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g   79 (239)
                      .+.+|++--...+.|.+.|    +++|.++|++||+.+++|.+|.+. -....+.....++. .|.+++  -|.+++-..
T Consensus       200 ~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~-Rt~~~~a~~~~gv~-PDivt~--gK~lggG~P  275 (428)
T PRK12389        200 EVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAF-RFMYGGAQDLLGVE-PDLTAL--GKIIGGGLP  275 (428)
T ss_pred             cEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEcccccc-ccCcchhhHHhCCC-CCeeee--chhhcCCCc
Confidence            3556666666677888888    999999999999999999999865 21111111123443 887654  798876455


Q ss_pred             ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhC
Q 048438           80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSG  152 (239)
Q Consensus        80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~  152 (239)
                      .|.+..+ ++......... ..  ....++ .+.+.......++|+.+..+   +..++..++.++|.+.|++
T Consensus       276 i~av~~~-~~i~~~~~~~~-~~--~~~~T~-~gnpl~~Aaala~L~~l~~~---~l~~~~~~~g~~l~~~L~~  340 (428)
T PRK12389        276 IGAYGGR-KDIMEQVAPLG-PA--YQAGTM-AGNPASMAAGIACLEVLQQE---GVYEKLDRLGAMLEEGILE  340 (428)
T ss_pred             eeEEeEH-HHHHhhhccCC-Cc--ccccCC-ccCHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHHHHH
Confidence            6777654 33332221100 00  000011 12222233333455555433   3455566888888888865

>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]

Probab=97.95  E-value=0.00069  Score=58.45  Aligned_cols=157  Identities=19%  Similarity=0.208  Sum_probs=97.0

Q ss_pred             EEEEEecCCCCcc-cccChhHHHHHHHHhCCEEEEecc-cccccccCcccccccCCCCCcceEEEcCcccCCCccc----
Q 048438            6 LFLCATIGTTAIT-AVDPLKPLCDVAKQFGIWVHVDAA-YAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD----   79 (239)
Q Consensus         6 ~~vv~t~gtt~~G-~i~pl~~i~~i~~~~gi~lhvD~A-~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g----   79 (239)
                      +.|++-. .+..| .+.++.+|.+.+|++|..++|=+= -+.+.+.-|       +--++|.++.+.+-+ +.|.|    
T Consensus       212 ~gv~vQy-P~~~G~~~~d~~~l~~~~h~~~al~~v~aDplaL~LL~pP-------Ge~GADIvvG~~Qrf-GvPmgfGGP  282 (450)
T COG0403         212 FGVLVQY-PNTFGIVEEDLRALIEAAHSAGALVIVAADPLALGLLKPP-------GEFGADIVVGSAQRF-GVPMGFGGP  282 (450)
T ss_pred             EEEEEec-CCCCCccchhHHHHHHHHhhcCCEEEEEechhHhhccCCc-------cccCCceEEecCccc-CCCcCCCCc
Confidence            3343333 44677 677799999999999998877552 223333222       111599999999996 56755    


Q ss_pred             -ceEEEeeCcccccccccC-CCCccCC---CCceecCC------CCCC---------h-HHHH--HHHHHhCHHHHHHHH
Q 048438           80 -CCCLWATNPEYLKNKATE-SKPVVDY---KDWQITLS------RSFR---------S-LKLW--FVIRNYGMENLRHFL  136 (239)
Q Consensus        80 -~g~l~~~~~~~l~~~~~~-~~~~~~~---~~~~~~~~------~~~~---------~-~~~~--~~l~~~g~~g~~~~~  136 (239)
                       +|+|-+++ ++.++.... -+.+.|-   ..+.+...      ||-.         + +++.  ..+..+|.+|++++.
T Consensus       283 hag~fA~~~-~~~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIRReKATSNICTnQaLlA~~As~y~~~hGp~GLk~iA  361 (450)
T COG0403         283 HAGYFAVKD-EFKRQMPGRLVGVSVDAAGKRAFRLALQTREQHIRREKATSNICTNQALLALAASMYAVYHGPQGLKEIA  361 (450)
T ss_pred             ceeeeeEhH-hHhhcCCCceeeeeecCCCCchhhhhHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHHhChHHHHHHH
Confidence             66777654 443332210 0011111   11122111      1211         0 1111  234578999999999


Q ss_pred             HHHHHHHHHHHHHHhCCC-CeEEEcCCCeeEEEEEEc
Q 048438          137 RSHVNMARLFERLVSGDK-RFEVVFPCHFAVVCFRVS  172 (239)
Q Consensus       137 ~~~~~la~~l~~~l~~~~-g~~~~~~~~~~iv~f~~~  172 (239)
                      ++.++++.++.++|+++. |++++.+...+-+.++++
T Consensus       362 ~r~~~~a~~la~~L~~~~~g~~~~~~~fFdt~~v~~~  398 (450)
T COG0403         362 ERIHRLAAYLAAGLKEIGAGVELVFDHFFDTFTVRVP  398 (450)
T ss_pred             HHHHHHHHHHHHHHhhcCCceEeccccceeeEEEecc
Confidence            999999999999999653 689887777788888875

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=97.94  E-value=0.00029  Score=62.21  Aligned_cols=79  Identities=16%  Similarity=0.051  Sum_probs=50.1

Q ss_pred             ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc
Q 048438            4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD   79 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g   79 (239)
                      .+.+|++.....++|.+.|    +++|.++|++||+++++|.+|.+. ..-..+.....++. .|.+  ++.|.+++-..
T Consensus       195 ~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~-r~g~~~~~~~~~~~-pDi~--t~sK~l~~G~p  270 (423)
T TIGR00713       195 EIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGF-RVALGGAQEYFGVE-PDLT--TLGKIIGGGLP  270 (423)
T ss_pred             cEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccccc-ccCcchhHHHhCCC-cchh--hhhhhhcCCCc
Confidence            3455666544444798877    789999999999999999999654 21111111122332 6754  57899874333


Q ss_pred             ceEEEee
Q 048438           80 CCCLWAT   86 (239)
Q Consensus        80 ~g~l~~~   86 (239)
                      .|.++.+
T Consensus       271 ig~v~~~  277 (423)
T TIGR00713       271 VGAFGGR  277 (423)
T ss_pred             eeeeeEH
Confidence            6666654

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase

Probab=97.94  E-value=0.00058  Score=61.23  Aligned_cols=138  Identities=12%  Similarity=0.007  Sum_probs=76.9

Q ss_pred             ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc
Q 048438            4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD   79 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g   79 (239)
                      ...+|++--...+.|.+.|    +++|.++|++||+.+++|.+|.+. -....+.....++. .|.+++  -|.+++-+.
T Consensus       246 ~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGf-R~g~~ga~~~~gv~-PDi~t~--gK~lggG~P  321 (474)
T PLN02482        246 EIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGF-RIAYGGAQEYFGIT-PDLTTL--GKVIGGGLP  321 (474)
T ss_pred             ceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCe-ecCcchHhHHhCCC-CCEEEe--cchhhCCCc
Confidence            3456666666677788877    457999999999999999999654 21111111123443 888655  799876455


Q ss_pred             ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC
Q 048438           80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD  153 (239)
Q Consensus        80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~  153 (239)
                      +|.+..+ +++........ ...  ...++ .+.+........+|+.+..+   +..++..++.++|++.|+++
T Consensus       322 igav~g~-~ei~~~~~~~~-~~~--~~~T~-~gnpl~~aAala~L~~l~~~---~~~~~~~~~g~~l~~~L~~l  387 (474)
T PLN02482        322 VGAYGGR-REIMEMVAPAG-PMY--QAGTL-SGNPLAMTAGIHTLKRLQQP---GTYEYLDKITKKLIQGILEA  387 (474)
T ss_pred             eEEEEEc-HHHHHhhccCC-Ccc--cccCc-chhHHHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHHHHHHH
Confidence            6777554 34433221100 000  00111 11122222333445555332   35556668888888888654

>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=97.91  E-value=0.0011  Score=59.23  Aligned_cols=200  Identities=11%  Similarity=0.048  Sum_probs=101.0

Q ss_pred             ccEEEEEecC-CCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcc
Q 048438            4 IPLFLCATIG-TTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATL   78 (239)
Q Consensus         4 ~p~~vv~t~g-tt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~   78 (239)
                      ...+|++--. ....|.+.|    +++|.++|++||+.+++|..+.+.--...-+.....++. .|.+++  -|.+++-+
T Consensus       221 ~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG~~fa~~~~gv~-PDivt~--gKgl~gG~  297 (453)
T PRK06943        221 KIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGTFFACEQAGVW-PDFLCL--SKGISGGY  297 (453)
T ss_pred             ceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCcchhHHHhCCCC-CCeEee--ehhhccCc
Confidence            3455555542 444566544    899999999999999999998654222211111123554 999988  68776542


Q ss_pred             -cceEEEeeCcccccccccCC-CCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC---
Q 048438           79 -DCCCLWATNPEYLKNKATES-KPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD---  153 (239)
Q Consensus        79 -g~g~l~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~---  153 (239)
                       ..|.++.++ ++........ ...+ ....+ ..+.+.......+.|+.+..+   +.+++..++.++|.+.|+++   
T Consensus       298 ~Pi~av~~~~-ei~~~~~~~~~~~~~-~~~~T-~~gnpl~~aaa~a~L~~i~~~---~l~~~~~~~G~~l~~~L~~l~~~  371 (453)
T PRK06943        298 LPLSLVLSRD-AIFAAFYDDDVTRGF-LHSHS-YTGNPLACRAALATLDLFAED---DVLARNARKSARLRAALAPLAAH  371 (453)
T ss_pred             ccceEEEEcH-HHHHhhcccCccCCc-cCCCC-CCCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHhcC
Confidence             466677654 3322211100 0000 00001 112222222233344444333   34455567778888877654   


Q ss_pred             CCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCC
Q 048438          154 KRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGAT  233 (239)
Q Consensus       154 ~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~  233 (239)
                      +.+.-+ .-.--++.+.+....               ..   ...+..++.+.+.++|.++..    .| ..+|+++---
T Consensus       372 ~~v~~v-rG~Gl~~gvel~~~~---------------~~---~~~~~~~i~~~~~~~Gll~~~----~g-~~l~~~Ppl~  427 (453)
T PRK06943        372 PQVRHL-RQRGTIFAFDVALDG---------------DA---ARTFSRRFFEAALERELLLRP----IG-TTVYLMPPYV  427 (453)
T ss_pred             CCEEeE-eccccEEEEEEccCC---------------Cc---chHHHHHHHHHHHHCCcEEEe----cC-CEEEEeCCCc
Confidence            222211 011224444543210               00   023455777888888876542    13 3588875544


Q ss_pred             CCC
Q 048438          234 LTE  236 (239)
Q Consensus       234 ~t~  236 (239)
                      .|+
T Consensus       428 it~  430 (453)
T PRK06943        428 LDD  430 (453)
T ss_pred             CCH
Confidence            444

>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=97.91  E-value=0.00053  Score=61.42  Aligned_cols=206  Identities=10%  Similarity=0.016  Sum_probs=102.5

Q ss_pred             cEEEEEec-CCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcc-
Q 048438            5 PLFLCATI-GTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATL-   78 (239)
Q Consensus         5 p~~vv~t~-gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~-   78 (239)
                      ..+|++-- .....|.+.|    +++|.++|++||+.+++|..+.+.--...-+.....++. .|.+++  -|.+++-+ 
T Consensus       215 iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~~~a~~~~gv~-PDiv~~--gKgl~gG~~  291 (466)
T PRK07030        215 IAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGTMFACEQAGIR-PDFLCL--SKALTGGYL  291 (466)
T ss_pred             eEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCccccchHHHhcCCC-CCEEee--ehhccCCcc
Confidence            45555554 2444566555    789999999999999999987654222211111123554 999988  68776542 


Q ss_pred             cceEEEeeCcccccccccCC--CCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCe
Q 048438           79 DCCCLWATNPEYLKNKATES--KPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRF  156 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~  156 (239)
                      ..|.+..++ ++........  ...+ ....+ ..+.+.......+.|+.+-.+   +..++..++.++|.+.|+++...
T Consensus       292 Pi~av~~~~-ei~~~~~~~~~~~~~~-~h~~T-~~gnpla~aaa~a~L~~i~~~---~l~~~~~~~G~~l~~~L~~l~~~  365 (466)
T PRK07030        292 PLAAVLTTD-TVYQAFYDDYPTLRAF-LHSHS-YTGNPLACAAALATLDIFEQD---NVIENNRALARRMAEATAHLADH  365 (466)
T ss_pred             cceEEEecH-HHHHHHhccccccccc-ccCCC-CCCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHhcC
Confidence            466676643 3322111000  0000 00011 112222223333345555443   34556668888888888765222


Q ss_pred             EEEcCC--CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCC
Q 048438          157 EVVFPC--HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATL  234 (239)
Q Consensus       157 ~~~~~~--~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~  234 (239)
                      ..+.+.  .--++.+.+.....         ... +-. . ......++.+++.++|.+...    .| .++|+.+.--.
T Consensus       366 ~~v~~vrG~Gl~~gie~~~~~~---------~~~-~~~-~-~~~~~~~i~~~~~~~Gvl~~~----~g-~~i~~~Ppl~i  428 (466)
T PRK07030        366 PHVAEVRQTGMILAIEMVQDKA---------SKT-PYP-W-QERRGLKVYQHALERGALLRP----LG-SVVYFLPPYVI  428 (466)
T ss_pred             CCEEEeEeceeEEEEEeccCcc---------ccc-cCc-c-hhHHHHHHHHHHHHCCeEEEe----cC-CEEEEECCccC
Confidence            222221  12245555532110         000 000 0 012234677788888866532    13 47888754444


Q ss_pred             CC
Q 048438          235 TE  236 (239)
Q Consensus       235 t~  236 (239)
                      |+
T Consensus       429 t~  430 (466)
T PRK07030        429 TP  430 (466)
T ss_pred             CH
Confidence            43

>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=97.90  E-value=0.00038  Score=62.24  Aligned_cols=207  Identities=10%  Similarity=-0.016  Sum_probs=100.5

Q ss_pred             cEEEEEec-CCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcc-
Q 048438            5 PLFLCATI-GTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATL-   78 (239)
Q Consensus         5 p~~vv~t~-gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~-   78 (239)
                      ..+|++-- .....|.+.|    +++|.++|++||+.+++|..+.+.--....+.....++. .|.+++  -|.+++-+ 
T Consensus       224 iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRtG~~~a~~~~gv~-PDiv~~--gK~l~gG~~  300 (460)
T PRK06916        224 IAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGKMFACEHENVT-PDIMTA--GKGLTGGYL  300 (460)
T ss_pred             EEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcCchhhHHHhcCCC-CCeeee--ehhhhcCcc
Confidence            44555544 2444566543    789999999999999999998653221211111123454 898875  68776542 


Q ss_pred             cceEEEeeCcccccccccCCCCccCC-CCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438           79 DCCCLWATNPEYLKNKATESKPVVDY-KDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE  157 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~  157 (239)
                      ..|.+..++ ++.............. ...++ .+.+.......++++.+..+   +..++..++.+++.+.|+++....
T Consensus       301 Pi~av~~~~-ei~~~~~~~~~~~~~~~~~~T~-~gnpl~~aaa~a~l~~l~~~---~l~~~~~~~g~~l~~~l~~l~~~~  375 (460)
T PRK06916        301 PIAITVTTD-EIYNAFYGDYEEQKTFFHGHSY-TGNPLGCAVALANLELYEKT---NLIEQVARKTEYVATQLEDLFALK  375 (460)
T ss_pred             ccceeeecH-HHHHHhhccccccCccccCCCC-CCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHhhcCC
Confidence            466677653 3332211100000000 00111 12222222233344444333   345566688888888887653222


Q ss_pred             EEcCC--CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCC
Q 048438          158 VVFPC--HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLT  235 (239)
Q Consensus       158 ~~~~~--~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t  235 (239)
                      ++.+.  .-.++.+.+..+..            ..............+...+.++|.++..    .| .++|+.+.--.|
T Consensus       376 ~v~~vrG~Glm~giel~~~~~------------~~~~~~~~~~~~~~i~~~~~~~Gvl~~~----~g-~~l~~~Ppl~it  438 (460)
T PRK06916        376 HVGDIRQLGLMVGIELVKNKE------------TKEPFEWTERVGVQVCKRSRELGMLTRP----LG-NTIVFMPPLAST  438 (460)
T ss_pred             CeEEeecCCceeeEEeecccc------------cccCCCchhhHHHHHHHHHHHCCeEEEe----cC-CEEEEeCCcccC
Confidence            22221  11234444432110            0000000012334677778888866532    13 478887555444


Q ss_pred             C
Q 048438          236 E  236 (239)
Q Consensus       236 ~  236 (239)
                      +
T Consensus       439 ~  439 (460)
T PRK06916        439 I  439 (460)
T ss_pred             H
Confidence            4

>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=97.90  E-value=0.00056  Score=61.23  Aligned_cols=207  Identities=12%  Similarity=-0.005  Sum_probs=104.4

Q ss_pred             cEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438            5 PLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC   80 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~   80 (239)
                      +.+|++--....-|.+-|    ++++.++|++||+.+++|..+.+.--...-+.....++. .|.+++  -|.+++-...
T Consensus       232 iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~e~~gv~-PDiv~~--gKglggG~Pl  308 (464)
T PRK06938        232 PAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGKMFAFEHAGII-PDVVVL--SKAIGGSLPL  308 (464)
T ss_pred             eEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcHHHHHHhcCCC-CCEEEe--eccccCCCce
Confidence            455555544455566655    799999999999999999988754222211111123454 899987  5887765567


Q ss_pred             eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC-CeEEE
Q 048438           81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK-RFEVV  159 (239)
Q Consensus        81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~-g~~~~  159 (239)
                      |.++.++ + +.....   .   ....++ .+.+.......+.|+.+..++   ..++..++.++|.+.|+++. ...++
T Consensus       309 sAv~~~~-~-~~~~~~---~---~~~~T~-~gnpla~Aaa~a~L~~l~~~~---l~~~~~~~G~~l~~~L~~l~~~~~~i  376 (464)
T PRK06938        309 AVVVYRE-W-LDTWQP---G---AHAGTF-RGNQMAMAAGSATLRYIKEHR---LAEHAAAMGERLREHLRQLQRDYPQL  376 (464)
T ss_pred             EEEeehh-H-hhccCC---C---CCCCCC-CcCHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence            7777654 2 221110   0   000111 122222233334455554443   34455577777777776531 12222


Q ss_pred             cCC--CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCCc
Q 048438          160 FPC--HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTEE  237 (239)
Q Consensus       160 ~~~--~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~  237 (239)
                      .+.  .--++.+.+......         .+..............+...+.++|.++.. ... ...+||+.+.--.|++
T Consensus       377 ~~VrG~Glm~gie~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~-~g~-~~~~l~~~Ppl~it~~  445 (464)
T PRK06938        377 GDVRGRGLMLGVEIVDPQGE---------PDALGHPPANGELASLIQRECLRRGLILEL-GGR-HGSVVRFLPPLIITAE  445 (464)
T ss_pred             eeeeccceEEEEEeccCccc---------ccccccCCccHHHHHHHHHHHHHCCeEEee-cCC-CCCEEEEECCCccCHH
Confidence            221  123455555321100         000000000013445677778888866532 111 1368999866555543

>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]

Probab=97.90  E-value=3.8e-05  Score=68.75  Aligned_cols=147  Identities=17%  Similarity=0.210  Sum_probs=94.8

Q ss_pred             EEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEEeeC
Q 048438            8 LCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWATN   87 (239)
Q Consensus         8 vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~   87 (239)
                      .++....|..|+.-++++|.+.++.+++|+.+|.+|+...-..+....... -..+|+++-|.||.+.+-..++.+.+++
T Consensus       169 ~~vitnpTYdGv~~n~~~i~~~~~~~~a~v~~deah~~~~~~~~~l~~~~~-~~~~~~~tqS~HK~l~alSQaS~iHv~~  247 (557)
T COG1982         169 LAVITNPTYDGVCYNLRKIVELLHHYGAWVLYDEAHPAHFDFSPMLPESAL-NGGADFVTQSTHKLLAALSQASMIHVKD  247 (557)
T ss_pred             eEEEecCccceEeecHHHHHHHHhhcCceEEhhhcCcccccccccCcchhh-hcCceEEEechhhhhhhhhhhHHHhhCC
Confidence            345556788999999999999999999999999999876554443322111 1359999999999999988888888875


Q ss_pred             cccccccccCCCCccCCCCceecCC-CC-CChHHHHHHH----HHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcC
Q 048438           88 PEYLKNKATESKPVVDYKDWQITLS-RS-FRSLKLWFVI----RNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFP  161 (239)
Q Consensus        88 ~~~l~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~l----~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~  161 (239)
                      ..++....-.  ..     +....+ .+ +..++.....    ...|..-+++-+....+.++++++.+.++++|+++.+
T Consensus       248 ~~~~~~~r~n--ea-----~~~h~STSPsY~l~ASlD~Ar~~~~~~G~~l~~~~~~~~i~~r~~~~~~~~~~~~~~~~~~  320 (557)
T COG1982         248 GRAVNHERFN--EA-----LMMHQSTSPSYPLMASLDVARMQEGNAGRELWQEVIDEAIDFRKALRRLINEIGFFPVLQP  320 (557)
T ss_pred             CccCCHHHHH--HH-----HHHHccCCchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccc
Confidence            3122111000  00     011111 11 1111111111    1224444455577888899999999999888988876


Q ss_pred             C
Q 048438          162 C  162 (239)
Q Consensus       162 ~  162 (239)
                      +
T Consensus       321 ~  321 (557)
T COG1982         321 E  321 (557)
T ss_pred             c
Confidence            5

>PRK06148 hypothetical protein; Provisional

Probab=97.89  E-value=0.0003  Score=68.61  Aligned_cols=205  Identities=10%  Similarity=0.007  Sum_probs=109.7

Q ss_pred             CccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcc-cccccCCCCCcceEEEcCcccCCCc
Q 048438            3 LIPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPE-FRHFIDGVEGADSFSLNAHKWFFAT   77 (239)
Q Consensus         3 ~~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~-~~~~~~~~~~~Ds~~~~~hK~l~~P   77 (239)
                      ..+.+|++--...+-|.+.|    ++++.++|++||+.+++|..|.+.--.... +.....++. .|.+++  -|.+++-
T Consensus       783 ~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~gv~-PDivt~--gK~lggG  859 (1013)
T PRK06148        783 RGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQGVV-PDIVTM--GKPIGNG  859 (1013)
T ss_pred             CceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcchhhhhcCCC-cceeee--cccccCC
Confidence            34566666666666788777    999999999999999999998653211110 110123553 899877  7888765


Q ss_pred             ccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC-Ce
Q 048438           78 LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK-RF  156 (239)
Q Consensus        78 ~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~-g~  156 (239)
                      ...|.+..++ +........  ..   . .+-.++.+.......++++.+..++   ..++..++.++|.+.|+++. ..
T Consensus       860 ~Plgav~~~~-ei~~~~~~g--~~---~-~~Tf~gnpla~aaa~a~L~~i~~e~---l~~~~~~~G~~l~~~L~~l~~~~  929 (1013)
T PRK06148        860 HPMGAVVTTR-EIADSFDNG--ME---Y-FNTFGGNPVSCAIGLAVLDIIEDED---LQRNALEIGNYLLAGLRELQDRF  929 (1013)
T ss_pred             cceEEEEEcH-HHHhhccCC--Cc---c-ccCCCCCHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHHHHHHHHhC
Confidence            6677787753 333222110  00   0 0111122222333334455554443   44455578888888886531 11


Q ss_pred             EEEcCC--CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCC
Q 048438          157 EVVFPC--HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATL  234 (239)
Q Consensus       157 ~~~~~~--~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~  234 (239)
                      .++...  .--++.+.+.....               +.+...+....+.+.|.++|.++.. ... ...++|+.+.-..
T Consensus       930 ~~i~~VrG~Gl~~gvel~~~~~---------------~~~~~~~~~~~i~~~~~~~Gvl~~~-~g~-~~~vlr~~Ppl~i  992 (1013)
T PRK06148        930 DIIGDVRGMGLFLGIELVTDRK---------------TKAPATAIARYVKNGARERGILIGT-EGP-HDNVLKIRPPLIF  992 (1013)
T ss_pred             CCceEEeeeceEEEEEecCCcc---------------ccCccHHHHHHHHHHHHhCCeEEec-cCC-CCCEEEEeCCccC
Confidence            222221  12244555532110               0000123455788888888866532 211 2378999866555


Q ss_pred             CCc
Q 048438          235 TEE  237 (239)
Q Consensus       235 t~~  237 (239)
                      |++
T Consensus       993 t~~  995 (1013)
T PRK06148        993 SRA  995 (1013)
T ss_pred             CHH
Confidence            543

>PRK09147 succinyldiaminopimelate transaminase; Provisional

Probab=97.89  E-value=0.00057  Score=59.79  Aligned_cols=191  Identities=13%  Similarity=0.070  Sum_probs=97.4

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccc-cccC---CCC--Ccc--eEEEcCccc
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFR-HFID---GVE--GAD--SFSLNAHKW   73 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~-~~~~---~~~--~~D--s~~~~~hK~   73 (239)
                      +-+++.+.-+|.||.+.+   +++|+++|++|++|+++|.+|+-....-.... ....   .+.  ..|  .+..++.|.
T Consensus       167 ~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~  246 (396)
T PRK09147        167 TQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKR  246 (396)
T ss_pred             cEEEEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEEeccccc
Confidence            445556677899999875   67778889999999999999875432110000 0010   010  012  677899996


Q ss_pred             CCCc-ccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHHh
Q 048438           74 FFAT-LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNY-GMENLRHFLRSHVNMARLFERLVS  151 (239)
Q Consensus        74 l~~P-~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~g~~~~~~~~~~la~~l~~~l~  151 (239)
                      ++.| .-+|.++. .+..+......    .....+      ....+...+++..+ ..+-+++..+...+..+.+.+.|.
T Consensus       247 ~~~~GlRiG~~~~-~~~l~~~~~~~----~~~~~~------~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  315 (396)
T PRK09147        247 SNVPGLRSGFVAG-DAALLKKFLLY----RTYHGC------AMPPAVQAASIAAWNDEAHVRENRALYREKFDAVTPILA  315 (396)
T ss_pred             cCCccceeeeecC-CHHHHHHHHHH----hhhccc------CCCHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence            5444 44666654 33333222110    000000      01111122212222 122344455555566667777776


Q ss_pred             CCCCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHH-hcCcEEEEEEEE--------CC
Q 048438          152 GDKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESIN-ASGKAYMTNVVL--------GG  222 (239)
Q Consensus       152 ~~~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~--------~g  222 (239)
                      +.  +.+..+...+.+.++++. .                        ...+.++|. +.|..+.....+        .+
T Consensus       316 ~~--~~~~~p~~g~f~~~~~~~-~------------------------~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~  368 (396)
T PRK09147        316 PV--LDVQLPDAGFYLWAKVPG-D------------------------DTEFARRLYADYNVTVLPGSYLAREAHGVNPG  368 (396)
T ss_pred             Hh--cCCCCCCeeEEEEEECCC-C------------------------HHHHHHHHHHhCCEEEeCCccccccccCCCCC
Confidence            53  443334445555555541 1                        014455554 446555443322        23


Q ss_pred             EeEEEEEecCC
Q 048438          223 IYAIRFATGAT  233 (239)
Q Consensus       223 ~~~lR~~~~~~  233 (239)
                      ..++|+++..+
T Consensus       369 ~~~iRi~~~~~  379 (396)
T PRK09147        369 AGRVRIALVAP  379 (396)
T ss_pred             CCeEEEEecCC
Confidence            57899998754

>PRK07480 putative aminotransferase; Validated

Probab=97.85  E-value=0.00097  Score=59.58  Aligned_cols=80  Identities=11%  Similarity=0.054  Sum_probs=51.2

Q ss_pred             cEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcc-c
Q 048438            5 PLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATL-D   79 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~-g   79 (239)
                      ..+|++--.....|.+.|    +++|.++|++||+.+++|..|.+.--...-+.....++. .|.+++  -|.+++-+ .
T Consensus       220 vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~-PDiv~~--gK~l~gG~~P  296 (456)
T PRK07480        220 VAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTGEWFGSQHFGIK-PDLMTI--AKGLTSGYIP  296 (456)
T ss_pred             EEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhhhhhcCCC-CCeeee--ehhhccCCcc
Confidence            445555555555678777    999999999999999999998653221111111123443 888766  68876532 3


Q ss_pred             ceEEEeeC
Q 048438           80 CCCLWATN   87 (239)
Q Consensus        80 ~g~l~~~~   87 (239)
                      .|.++.++
T Consensus       297 i~av~~~~  304 (456)
T PRK07480        297 MGAVGVGD  304 (456)
T ss_pred             ceEEEEcH
Confidence            56666643

>PRK06918 4-aminobutyrate aminotransferase; Reviewed

Probab=97.84  E-value=0.0017  Score=57.91  Aligned_cols=198  Identities=13%  Similarity=0.032  Sum_probs=96.4

Q ss_pred             cEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438            5 PLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC   80 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~   80 (239)
                      ..+|++--.....|.+.|    +++|.++|++||++++.|..+.+.......+.....++ ..|.+  ++.|.+++-..+
T Consensus       220 iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g~~~a~~~~~v-~pDi~--t~sK~l~~G~pi  296 (451)
T PRK06918        220 IAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGKYFAIEHFDV-VPDLI--TVSKSLGAGVPI  296 (451)
T ss_pred             eEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccCceehhHhcCC-CCCEE--eeehhhcCCCcc
Confidence            445555444444565444    78899999999999999999865422111110001122 27754  578998755557


Q ss_pred             eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC----CCe
Q 048438           81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD----KRF  156 (239)
Q Consensus        81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~----~g~  156 (239)
                      |.++.+ +++.......    .  ...+ .++.+........+++.+..+.+.+   +..++.+++.++|+++    +.+
T Consensus       297 g~v~~~-~~i~~~~~~~----~--~~~T-~~g~~l~~aaa~a~l~~i~~~~~~~---~~~~~g~~l~~~l~~l~~~~~~~  365 (451)
T PRK06918        297 SGVIGR-KEIMDESAPG----E--LGGT-YAGSPLGCAAALAVLDIIEKENLND---RAIELGKVVMNRFEEMKNKYNCI  365 (451)
T ss_pred             EEEEEc-HHHHhccCCC----C--cCcC-CCcCHHHHHHHHHHHHHHHHCCHHH---HHHHHHHHHHHHHHHHHhhCCCc
Confidence            777764 3333322110    0  0001 1111222222223444443333333   3445666666666543    211


Q ss_pred             EEEcCCCeeEEEEEEc-CCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCC
Q 048438          157 EVVFPCHFAVVCFRVS-PLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLT  235 (239)
Q Consensus       157 ~~~~~~~~~iv~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t  235 (239)
                      .-+. ..-.+..+.+. +....            ..+    ......+.+.+.++|.++.+....  ..++|+++..-.|
T Consensus       366 ~~vr-g~G~~~~~~~~~~~~~~------------~~~----~~~~~~l~~~~~~~Gvlv~~~~~~--~~~lrl~p~l~~t  426 (451)
T PRK06918        366 GDVR-GLGAMCAFELVQDRKTK------------EPD----KTLTANICKEANKRGLLLLSAGTY--GNVIRVLMPLVIT  426 (451)
T ss_pred             eeec-cceeEEEEEEccCCCcC------------CCc----HHHHHHHHHHHHHCCeEEeecCCC--CCEEEEECCCccC
Confidence            1121 22334444442 11000            001    234457777788888776542111  2679998754343

>PRK06855 aminotransferase; Validated

Probab=97.82  E-value=0.001  Score=59.00  Aligned_cols=155  Identities=12%  Similarity=0.079  Sum_probs=81.7

Q ss_pred             EEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCC-CCcceEEEcCcccCCCc-ccc
Q 048438            6 LFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGV-EGADSFSLNAHKWFFAT-LDC   80 (239)
Q Consensus         6 ~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~-~~~Ds~~~~~hK~l~~P-~g~   80 (239)
                      .+++.+.-+|.||.+.+   +++|+++|++||+|++.|.+|+-....-........-. +.--++..|+.|.++.| .=+
T Consensus       173 ~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~~~~~I~~~S~SK~~~~pGlRi  252 (433)
T PRK06855        173 AGILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIGDVPGIALKGISKELPWPGSRC  252 (433)
T ss_pred             eEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHcCcCCeEEEecCccccCCCcceE
Confidence            45555667899999887   56677889999999999999874432111111110000 11126778999998645 336


Q ss_pred             eEEEeeC----c---ccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhC----HHHHHHHHHHHHHHHHHHHHH
Q 048438           81 CCLWATN----P---EYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYG----MENLRHFLRSHVNMARLFERL  149 (239)
Q Consensus        81 g~l~~~~----~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g----~~g~~~~~~~~~~la~~l~~~  149 (239)
                      |++...+    +   .++......       .  ....+  ...+...++...+.    .+-+++..+...+..+.+.+.
T Consensus       253 G~ii~p~~~~~~~~~~~~~~~~~~-------~--~~~~~--~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~  321 (433)
T PRK06855        253 GWIEVYNADKDEVFKKYINSILNA-------K--MIEVC--STTLPQMAIPRIMSHPEYKNYLKERNKRYEKRSNIAYEK  321 (433)
T ss_pred             EEEEEeCCchhhHHHHHHHHHHHh-------h--ccccC--CChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            7776521    1   111111000       0  00001  01122222222331    123445555566777788888


Q ss_pred             HhCCCCeEEEcCCCeeE-EEEEEc
Q 048438          150 VSGDKRFEVVFPCHFAV-VCFRVS  172 (239)
Q Consensus       150 l~~~~g~~~~~~~~~~i-v~f~~~  172 (239)
                      |++.+++.+. +|+.+. +.++++
T Consensus       322 L~~~~~~~~~-~p~gg~~~w~~l~  344 (433)
T PRK06855        322 LKDVPGLKVN-RTNGAFYMTVVFE  344 (433)
T ss_pred             HhcCCCeecc-CCCeeEEEeeccc
Confidence            9887777654 555543 333443

>PRK14809 histidinol-phosphate aminotransferase; Provisional

Probab=97.80  E-value=0.00097  Score=57.50  Aligned_cols=182  Identities=14%  Similarity=0.068  Sum_probs=96.7

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHh--CCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-ccce
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQF--GIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-LDCC   81 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~--gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~g   81 (239)
                      +-+|+++..+|.||.+.|.+++.++++..  ++++++|.+|+-.... .........-+ -=.++.++.|.++.| .-+|
T Consensus       155 ~k~i~l~~p~NPTG~~~s~~~~~~l~~~~~~~~~iI~De~y~~~~~~-~~~~~~~~~~~-~vi~~~SfSK~~~~~GlRiG  232 (357)
T PRK14809        155 ERIVYLTSPHNPTGSEIPLDEVEALAERTDEETLVVVDEAYGEFAER-PSAVALVEERD-DVAVLRTFSKAYGLAGLRLG  232 (357)
T ss_pred             CcEEEEeCCCCCCCcCCCHHHHHHHHHhCccCcEEEEechhhhccCC-chhHHHHhhCC-CEEEEecchhHhcCcchhhe
Confidence            34566678889999999988888887654  8999999998753211 00000111101 114567999998644 3467


Q ss_pred             EEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc
Q 048438           82 CLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGM-ENLRHFLRSHVNMARLFERLVSGDKRFEVVF  160 (239)
Q Consensus        82 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~  160 (239)
                      +++. .++++.......      ..+.      ...+....++..+.. +-+++..+...+..+++.+.|... .    .
T Consensus       233 ~~~~-~~~~~~~~~~~~------~~~~------~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~-~----~  294 (357)
T PRK14809        233 YAVV-PEEWADAYARVN------TPFA------ASELACRAGLAALDDDEHVERTVETARWAREYIREELDAP-T----W  294 (357)
T ss_pred             eeec-CHHHHHHHHHhC------CCCC------CCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhcCc-c----C
Confidence            6665 334433322100      0011      122333333333322 233444444445556666666542 1    2


Q ss_pred             CCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecC
Q 048438          161 PCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGA  232 (239)
Q Consensus       161 ~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~  232 (239)
                      ++..+.+.+++++                          ...+.+.|.++|..+..........++|+++..
T Consensus       295 ~~~g~f~~~~~~~--------------------------~~~~~~~l~~~gv~v~~g~~f~~~~~iRls~~~  340 (357)
T PRK14809        295 ESAGNFVLAEVGD--------------------------ASAVAEAAQERGVIVRDCTSFGLPECIRITCGT  340 (357)
T ss_pred             CCCCCEEEEECCC--------------------------HHHHHHHHHHCCEEEEECccCCCCCeEEEecCC
Confidence            4555555555531                          014556666666655554444334689999753

>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=97.80  E-value=0.0006  Score=60.32  Aligned_cols=178  Identities=10%  Similarity=-0.018  Sum_probs=88.7

Q ss_pred             cChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-ccceEEEeeCcccccccccC-C
Q 048438           21 DPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-LDCCCLWATNPEYLKNKATE-S   98 (239)
Q Consensus        21 ~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~g~l~~~~~~~l~~~~~~-~   98 (239)
                      ..+++|.++|++||+.+++|.+|.+.--...-+.....++. .|++++  -|.+++- ...|++++++ +........ .
T Consensus       222 ~~l~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~-PDi~t~--gK~l~gG~~p~~av~~~~-~i~~~~~~~~~  297 (422)
T PRK05630        222 ALIEGVRTLCDKHDILLIADEIATGFGRTGELFATLAAGVT-PDIMCV--GKALTGGFMSFAATLCTD-KVAQLISTPNG  297 (422)
T ss_pred             HHHHHHHHHHHHcCCEEEEecceeCCCcCchhhHHHhcCCC-CCeeee--echhhcCccccceeeccH-HHHHHHhccCC
Confidence            34899999999999999999998653221111110123443 888855  7998542 1245555543 222111100 0


Q ss_pred             CCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcC--CCeeEEEEEEcCCCc
Q 048438           99 KPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFP--CHFAVVCFRVSPLPV  176 (239)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~--~~~~iv~f~~~~~~~  176 (239)
                      ...+. ...++ .+.+..+.....+++.+..+.   ..++..++.++|.+.|+++.....+.+  -...++.+.+..+. 
T Consensus       298 ~~~~~-h~~T~-~g~Pla~aaa~aaL~~l~~~~---~~~~~~~~g~~l~~~L~~l~~~~~v~~vRg~Gl~~~ie~~~~~-  371 (422)
T PRK05630        298 GGALM-HGPTF-MANPLACAVAHASLEIIETGM---WRKQVKRIEAELIAGLSPLAHLPGVADVRVLGAIGVVEMEQPV-  371 (422)
T ss_pred             CCccc-cCCCC-cCCHHHHHHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHhhcCCCeeeeeccccEEEEEECCcc-
Confidence            00000 00111 122222333344555554433   345666888888887765322111222  12345666664321 


Q ss_pred             chhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCC
Q 048438          177 LMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLT  235 (239)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t  235 (239)
                                            ....+.+.+.++|.+...    .| .++|+.+---.|
T Consensus       372 ----------------------~~~~~~~~~~~~Gl~~~~----~g-~~l~~~PpL~it  403 (422)
T PRK05630        372 ----------------------DMEEATQAAVDHGVWLRP----FG-RLVYVMPPYITT  403 (422)
T ss_pred             ----------------------cHHHHHHHHHHCCeEEEe----cC-CEEEEECCccCC
Confidence                                  012566677778765432    23 578887544333

>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

Probab=97.79  E-value=0.00068  Score=58.54  Aligned_cols=186  Identities=16%  Similarity=0.080  Sum_probs=112.2

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHh--CCEEEEecccccccccCcccccccCCCCCcc--eEEEcCcccCCCc-cc
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQF--GIWVHVDAAYAGSACIFPEFRHFIDGVEGAD--SFSLNAHKWFFAT-LD   79 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~--gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~D--s~~~~~hK~l~~P-~g   79 (239)
                      +-+|.++.-+|.||...+.++|.+++...  +.+++||.|+.=..-  +..-..+.   .-+  .+.=++.|.++-+ .=
T Consensus       146 ~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~~~~~vVvDEAY~eF~~--~~~~~l~~---~~~nlivlRTfSKa~gLAGlR  220 (356)
T COG0079         146 TKLVFLCNPNNPTGTLLPREELRALLEALPEGGLVVIDEAYIEFSP--ESSLELLK---YPPNLIVLRTFSKAFGLAGLR  220 (356)
T ss_pred             CCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhhcCC--chhhhhcc---CCCCEEEEEecHHhhhcchhc
Confidence            45677788899999999998888888754  889999999853222  11111111   133  3445899975543 22


Q ss_pred             ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 048438           80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYG-MENLRHFLRSHVNMARLFERLVSGDKRFEV  158 (239)
Q Consensus        80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~g~~~~~~~~~~la~~l~~~l~~~~g~~~  158 (239)
                      +|+.+ .+++.+.....-.      .+|..      .......+...+. .+-+++..++..+-.+++.+.|++++ +.-
T Consensus       221 lGy~i-a~~~~i~~l~~vr------~p~~v------~~~a~~aa~aal~~~~~~~~~~~~~~~~r~rl~~~l~~~~-~~~  286 (356)
T COG0079         221 VGYAI-ANPELIAALNKVR------PPFNV------SSPALAAAIAALRDADYLEESVERIREERERLYAALKALG-LFG  286 (356)
T ss_pred             eeecc-CCHHHHHHHHHhc------CCCCC------CHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHhCC-CCe
Confidence            56533 3454443332100      11211      1222222322222 24566777777888899999999985 553


Q ss_pred             EcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEE-CCEeEEEEEecCC
Q 048438          159 VFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVL-GGIYAIRFATGAT  233 (239)
Q Consensus       159 ~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~-~g~~~lR~~~~~~  233 (239)
                      +.|...|-+.++.+..                       . ...+.+.|.++|.+....... ....++|+++..+
T Consensus       287 v~pS~aNFvlv~~~~~-----------------------~-~~~l~~~L~~~giivR~~~~~~~~~~~lRitvgt~  338 (356)
T COG0079         287 VFPSQANFVLVRVPDA-----------------------E-AAALAEALLKKGILVRDCSSVGLLPGYLRITVGTP  338 (356)
T ss_pred             ecCCCCcEEEEECCCc-----------------------c-HHHHHHHHHHCCEEEEeCCCCCCCCCeEEEEeCCH
Confidence            4466788888887641                       1 236677788888886665332 2346999998764

>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue

Probab=97.76  E-value=0.0002  Score=61.48  Aligned_cols=79  Identities=16%  Similarity=0.148  Sum_probs=53.9

Q ss_pred             EEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccce
Q 048438            6 LFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCC   81 (239)
Q Consensus         6 ~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g   81 (239)
                      .+|++--.....|.+.|    +++|.++|++||+.+++|..+.+..-...-+.....++. .|.++++  |.+.+-...|
T Consensus       179 aavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~a~~~~gv~-PDiv~~g--K~l~gG~p~s  255 (339)
T PF00202_consen  179 AAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGKFFASEHYGVD-PDIVTFG--KGLGGGLPIS  255 (339)
T ss_dssp             EEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSSSSGHHHHTSS-SSEEEEE--GGGGTTSSEE
T ss_pred             EEEEEeccccccCccccccchhhehcccccccccceecccccccccccCCccceeccccc-Ccccccc--cchhhhhhcc
Confidence            45556556666666543    799999999999999999998865322221211134554 8999997  9887767778


Q ss_pred             EEEeeC
Q 048438           82 CLWATN   87 (239)
Q Consensus        82 ~l~~~~   87 (239)
                      .+++++
T Consensus       256 av~~~~  261 (339)
T PF00202_consen  256 AVLGSE  261 (339)
T ss_dssp             EEEEEH
T ss_pred             cccccc
Confidence            888764

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....

>PRK03967 histidinol-phosphate aminotransferase; Provisional

Probab=97.74  E-value=0.0013  Score=56.40  Aligned_cols=75  Identities=17%  Similarity=0.064  Sum_probs=50.4

Q ss_pred             EEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-ccceEEEe
Q 048438            7 FLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-LDCCCLWA   85 (239)
Q Consensus         7 ~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~g~l~~   85 (239)
                      +++.+..+|.||.+.+.++|.++++ +++++++|.++....  ...........+. =.+..|+.|.++.| .-+|+++.
T Consensus       143 ~v~~~~P~NPtG~~~~~~~l~~i~~-~~~~ii~De~y~~~~--~~~~~~~~~~~~~-vi~l~S~SK~~~l~GlRiG~iv~  218 (337)
T PRK03967        143 AVFICSPNNPTGNLQPEEEILKVLE-TGKPVVLDEAYAEFS--GKSLIGLIDEYPN-LILLRTFSKAFGLAGIRAGYAIA  218 (337)
T ss_pred             EEEEeCCCCCCCCCCCHHHHHHHHh-cCCEEEEECchhhhc--ccchHHHHhhCCC-EEEEecchHhhcchhhhheeeec
Confidence            4556778999999999999999995 799999999986432  1111111111111 24567999998744 34677765

>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=97.71  E-value=0.0014  Score=58.71  Aligned_cols=207  Identities=12%  Similarity=0.049  Sum_probs=103.7

Q ss_pred             cEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438            5 PLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC   80 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~   80 (239)
                      ..+|++--.....|.+-|    +++|.++|++||+.+++|..+.+.--...-+.....++. .|.+++  -|.+++-...
T Consensus       226 iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG~~~a~~~~gv~-PDivt~--gK~l~gG~Pi  302 (459)
T PRK06931        226 PAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGKMFAFEHAGIE-PDIIVM--SKAVGGGLPL  302 (459)
T ss_pred             eEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCchHHHhhhcCCC-CCEEEe--cccccCCcce
Confidence            445555444455566554    899999999999999999998754222211111123453 899887  6887665556


Q ss_pred             eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC-CeEEE
Q 048438           81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK-RFEVV  159 (239)
Q Consensus        81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~-g~~~~  159 (239)
                      |++..++ .+ .....   .   ....++ .+.+.......+.|+.+..++   ..++..++.++|.+.|+++. ...++
T Consensus       303 ~av~~~~-~~-~~~~~---~---~~~~T~-~gnpla~aaala~L~~l~~~~---l~~~~~~~G~~l~~~L~~l~~~~~~i  370 (459)
T PRK06931        303 AVLGIKK-EF-DAWQP---G---GHTGTF-RGNQLAMATGLTTLKILKEEN---LAQNAAERGEWLKAQLAELQKRYPCI  370 (459)
T ss_pred             eeeeeHH-HH-hhccC---C---CCCCCC-CCCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence            6666543 32 21110   0   000111 122222233334455443333   44455577777777776531 11122


Q ss_pred             cCC--CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCCc
Q 048438          160 FPC--HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTEE  237 (239)
Q Consensus       160 ~~~--~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~  237 (239)
                      ...  .-.++.+.+......         .+..............+.+.+.++|.++... . .+..++|+.+.--.|++
T Consensus       371 ~~vrG~Glm~giel~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~-~-~~~~~l~~~Ppl~it~~  439 (459)
T PRK06931        371 GNVRGRGLMIGIEIVDERQP---------ADAMGSYPADGELAAAIQKACFENGLLLERG-G-RNGNVVRLLPPLLITQA  439 (459)
T ss_pred             EeEecCceEEEEEEccCccc---------ccccccCCccHHHHHHHHHHHHHCCcEEeec-C-CCCCEEEEECCCCcCHH
Confidence            221  223555555321100         0000000000133456777888888765321 1 12467999876655554

>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]

Probab=97.71  E-value=0.0019  Score=53.55  Aligned_cols=79  Identities=22%  Similarity=0.243  Sum_probs=54.1

Q ss_pred             cEEEEEecCCCCcccc---cChhHHHHHHHHhCCEEEEecccccccc--cCcccccccCCCCCcceEEEcCcccCCCccc
Q 048438            5 PLFLCATIGTTAITAV---DPLKPLCDVAKQFGIWVHVDAAYAGSAC--IFPEFRHFIDGVEGADSFSLNAHKWFFATLD   79 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i---~pl~~i~~i~~~~gi~lhvD~A~~~~~~--~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g   79 (239)
                      .-+||++--||.||.+   +.+.+|.++|++||+++++|-|+|...-  .+.+....   +..=-.+++|..|.+.--.-
T Consensus       180 ~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~PFP~iifsd~~~~---w~~NiilC~SLSK~GLPG~R  256 (417)
T COG3977         180 TGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVPFPGIIFSDATPL---WNENIILCMSLSKLGLPGSR  256 (417)
T ss_pred             cceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCCCCCceeccccccc---CCCCEEEEeehhhcCCCCcc
Confidence            3478888889999986   3477788889999999999999985421  11111111   11234578999998554445


Q ss_pred             ceEEEee
Q 048438           80 CCCLWAT   86 (239)
Q Consensus        80 ~g~l~~~   86 (239)
                      ||+++..
T Consensus       257 ~GIiIan  263 (417)
T COG3977         257 CGIIIAN  263 (417)
T ss_pred             eeEEEcc
Confidence            8877753

>PRK12566 glycine dehydrogenase; Provisional

Probab=97.71  E-value=0.0017  Score=62.01  Aligned_cols=151  Identities=15%  Similarity=0.104  Sum_probs=91.6

Q ss_pred             EecCCCCcccccChhHHHHHHHHhCCEEEEeccc--ccccccCcccccccCCCCCcceEEEcCcccCCCccc-----ceE
Q 048438           10 ATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAY--AGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD-----CCC   82 (239)
Q Consensus        10 ~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~--~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g-----~g~   82 (239)
                      +..-.+..|.+.++++|++++|+.|..++ +++-  +.+.+.-|      -.+ ++|+++.+ ++-|+.|.|     +|+
T Consensus       213 ~vq~P~~~G~i~d~~~i~~~~h~~gal~~-~~~d~laL~ll~~P------ge~-GADI~vG~-~Q~fGvp~~~GGP~ag~  283 (954)
T PRK12566        213 LLQYPDTHGEIRDLRPLIDQLHGQQALAC-VAADLLSLLVLTPP------GEL-GADVVLGS-TQRFGVPMGYGGPHAAY  283 (954)
T ss_pred             EEECCCCceEEccHHHHHHHHHHcCCEEE-EEeCHHHHhCCCCh------hhc-CCcEEeeC-CCcCCCCCCCCCCCeee
Confidence            33445789999999999999999999854 5553  22323222      112 59998554 444566644     667


Q ss_pred             EEeeCcccccccccC-CCCccCC---CCceecCC------CCC-------Ch---HHHHH--HHHHhCHHHHHHHHHHHH
Q 048438           83 LWATNPEYLKNKATE-SKPVVDY---KDWQITLS------RSF-------RS---LKLWF--VIRNYGMENLRHFLRSHV  140 (239)
Q Consensus        83 l~~~~~~~l~~~~~~-~~~~~~~---~~~~~~~~------~~~-------~~---~~~~~--~l~~~g~~g~~~~~~~~~  140 (239)
                      +.+++ .|.+..... -+.+.|.   ..|.+...      ||-       .+   +++.+  .+..+|.+|++++.++.+
T Consensus       284 ~a~~~-~~~R~~PGRivG~s~D~~G~~a~~l~LqtREQHIRReKAtSNICT~qaL~A~~a~~Y~~~~Gp~Gl~~ia~~~~  362 (954)
T PRK12566        284 FACRD-DYKRAMPGRIIGVSRDARGNTALRMALQTREQHIRREKANSNICTAQVLLANIAGFYAVYHGPEGLKRIAQRVH  362 (954)
T ss_pred             eeehH-HHHhhCCCCccceeecCCCCeeeehhhhHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence            77654 343332210 0011111   01111111      221       11   12222  235679999999999999


Q ss_pred             HHHHHHHHHHhCCCCeEEEcCCCeeEEEEEE
Q 048438          141 NMARLFERLVSGDKRFEVVFPCHFAVVCFRV  171 (239)
Q Consensus       141 ~la~~l~~~l~~~~g~~~~~~~~~~iv~f~~  171 (239)
                      .++.++.+.|.+ .|+++..++-.+-+.+++
T Consensus       363 ~~a~~l~~~l~~-~g~~~~~~~fF~~~~v~~  392 (954)
T PRK12566        363 RLTAILAAGLEA-KGIKRLNRHFFDTLTLEV  392 (954)
T ss_pred             HHHHHHHHHHHh-cCCccccCCccceEEEEc
Confidence            999999999999 699988776667776766

>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=97.71  E-value=0.0015  Score=58.52  Aligned_cols=206  Identities=12%  Similarity=0.031  Sum_probs=98.7

Q ss_pred             cEEEEEec-CCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcc-
Q 048438            5 PLFLCATI-GTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATL-   78 (239)
Q Consensus         5 p~~vv~t~-gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~-   78 (239)
                      +.+|++-- .....|.+.|    ++++.++|++||+.+++|..+.+.--...-+.....++. .|.+++  -|.+++-+ 
T Consensus       237 iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGRtG~~~a~e~~gv~-PDiv~~--gKgl~gG~~  313 (472)
T PRK08742        237 ICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTGTLFACEQAGVM-PDLLCL--SKGLTGGFL  313 (472)
T ss_pred             eEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchHHHhcCCC-CCEEEE--cccccCCCC
Confidence            44555543 2344466544    789999999999999999998754222211111123554 999987  68876432 


Q ss_pred             cceEEEeeCcccccccccCC-CCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438           79 DCCCLWATNPEYLKNKATES-KPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE  157 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~  157 (239)
                      ..|.+++++ +......... ...+ ....+ ..+.+.......++++.+..++   .+++..++.+++.+.++.+....
T Consensus       314 Plaav~~~~-ei~~~~~~~~~~~~~-~h~~T-~~gnpl~~Aaa~a~L~~i~~~~---l~~~~~~~g~~l~~~~~~~~~~~  387 (472)
T PRK08742        314 PLSAVLATQ-QLYDAFLDDSRERAF-LHSHS-YTGNPLACAAALATLDIFADDD---VIARNQPTAARMTQLAAQIGEHP  387 (472)
T ss_pred             CcceeeccH-HHHHHhhccCccCcc-CcCCC-CCccHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHHHhcCC
Confidence            456666643 3322111000 0000 00011 1122222233333455444443   34445566677766655432222


Q ss_pred             EEcCC--CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCC
Q 048438          158 VVFPC--HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLT  235 (239)
Q Consensus       158 ~~~~~--~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t  235 (239)
                      ++.+.  .--++.+.+......         .   ............+.+++.++|.+...    .| .++|+.+--..|
T Consensus       388 ~i~dvRG~Gl~~giel~~~~~~---------~---~~~~~~~~~~~~~~~~~~~~Gll~~~----~g-~vi~~~PpL~it  450 (472)
T PRK08742        388 HVADVRQAGMVVAFELTRGGNK---------R---TPFPPAARVGLHAYRAALARGVVLRP----LG-DVLYWMPPYCVD  450 (472)
T ss_pred             CeeeEeccceEEEEEeccCccc---------c---ccCCchhHHHHHHHHHHHHCCeEEEe----cC-CEEEEECCCCCC
Confidence            22222  122455555321100         0   00000012334677778888866542    23 579988654444


Q ss_pred             C
Q 048438          236 E  236 (239)
Q Consensus       236 ~  236 (239)
                      +
T Consensus       451 ~  451 (472)
T PRK08742        451 E  451 (472)
T ss_pred             H
Confidence            3

>PRK01533 histidinol-phosphate aminotransferase; Validated

Probab=97.64  E-value=0.0006  Score=59.13  Aligned_cols=181  Identities=11%  Similarity=0.084  Sum_probs=98.9

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHH---HhCCEEEEecccccccccCcccccccCCCC--CcceEEEcCcccCCCc-c
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAK---QFGIWVHVDAAYAGSACIFPEFRHFIDGVE--GADSFSLNAHKWFFAT-L   78 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~---~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~--~~Ds~~~~~hK~l~~P-~   78 (239)
                      +-+|+++..+|.||.+.+.+++.++++   +++ ++++|.++...... .........++  .--.++.++.|.++.| .
T Consensus       152 ~~~v~i~~P~NPTG~~~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~-~~~~~~~~~~~~~~~vi~~~SfSK~~~l~Gl  229 (366)
T PRK01533        152 TKIVWICNPNNPTGTYVNDRKLTQFIEGISENT-LIVIDEAYYEYVTA-KDFPETLPLLEKHKNILVLRTFSKAYGLASF  229 (366)
T ss_pred             CcEEEEeCCCCCCCCCcCHHHHHHHHHhCCCCC-EEEEEccHHHhhcc-ccCcchhHHhccCCCEEEEeCchHHhcChHH
Confidence            345666778999999999777666654   444 67889998632211 10000011111  1235678999997644 2


Q ss_pred             cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438           79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGME-NLRHFLRSHVNMARLFERLVSGDKRFE  157 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-g~~~~~~~~~~la~~l~~~l~~~~g~~  157 (239)
                      -+|+++. .++++.......      ..+.      ...+...++...+... -.++..+...+..+++.+.+++. |++
T Consensus       230 RiG~~i~-~~~~~~~l~~~~------~~~~------~~~~~q~aa~~~l~~~~~~~~~~~~~~~~r~~~~~~l~~~-g~~  295 (366)
T PRK01533        230 RVGYAVG-HEELIEKLNVVR------LPFN------VSSLAQKAATIAFGDDEFIEEIVRVNTEGLRQYESFCKEN-EIP  295 (366)
T ss_pred             HHhHHhC-CHHHHHHHHHhc------CCCC------cCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC-CCc
Confidence            2565554 344433221100      0011      1223333333333222 23344445556667777777775 777


Q ss_pred             EEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCC
Q 048438          158 VVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGAT  233 (239)
Q Consensus       158 ~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~  233 (239)
                      +. +++.|-+.+++++.                          ..+.+.|.++|......     ..++|+++..+
T Consensus       296 ~~-~~~~nf~~~~~~~~--------------------------~~~~~~l~~~GI~Vr~~-----~~~iRis~~~~  339 (366)
T PRK01533        296 FY-QSQTNFIFLPVENG--------------------------GEIYEACAHAGFIIRPF-----PNGVRITVGTR  339 (366)
T ss_pred             cC-CCcCcEEEEeCCCH--------------------------HHHHHHHHHCCcEEccC-----CCceEEeCCCH
Confidence            54 56777666665321                          15667777788776642     25799997764

>PRK06917 hypothetical protein; Provisional

Probab=97.62  E-value=0.0013  Score=58.63  Aligned_cols=211  Identities=13%  Similarity=0.037  Sum_probs=102.4

Q ss_pred             cEEEEEecCCCC-cccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcc-
Q 048438            5 PLFLCATIGTTA-ITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATL-   78 (239)
Q Consensus         5 p~~vv~t~gtt~-~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~-   78 (239)
                      ..+|++--.... -|.+.|    +++|.++|++||+.+++|..+.+.--....+.....++. .|.+++  -|.+++-+ 
T Consensus       200 iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG~~~a~~~~gv~-PDi~~~--gK~l~~G~~  276 (447)
T PRK06917        200 IAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGAMFAMEHWGVE-PDIMTL--GKGLGAGYT  276 (447)
T ss_pred             eEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCcccchhhHHhcCCC-CCEEEe--eehhccCCc
Confidence            445555543332 345444    789999999999999999998753222211111123443 898765  79887532 


Q ss_pred             cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC-CeE
Q 048438           79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK-RFE  157 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~-g~~  157 (239)
                      ..|.+..++ ++.............  ..+ ..+.+.......++++.+..+   +..++..++.++|.+.|+++. ...
T Consensus       277 Pi~a~~~~~-~i~~~~~~~~~~~~~--~~T-~~gnpl~~aaa~a~l~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~  349 (447)
T PRK06917        277 PIAATVVSD-RVMEPILRGSRSIMS--GHT-LSANPLSAATALAVLEYMEKH---NLPEKAAEKGEYLIKGLQKVQQQST  349 (447)
T ss_pred             ceEEEEEcH-HHHHHHhccCccccc--ccC-CCCCHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            356666643 333222110000000  001 112222223333445544333   345556678888888876642 122


Q ss_pred             EEcCC--CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEE-E--ECCEeEEEEEecC
Q 048438          158 VVFPC--HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNV-V--LGGIYAIRFATGA  232 (239)
Q Consensus       158 ~~~~~--~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-~--~~g~~~lR~~~~~  232 (239)
                      ++...  .-.++.+.+.....            .........+....+.+.+.++|.+..... .  -.+..++|+++--
T Consensus       350 ~i~~vrG~Gl~~~ie~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~g~~~~~i~l~Ppl  417 (447)
T PRK06917        350 IIGDVRGKGLLIGVEFVADKK------------TKQPFSKSQAVASELISVAAKNGLLLYPAVAGQDGKEGDAVIIAPPM  417 (447)
T ss_pred             CEEEEeecceEEEEEEeccCC------------cCCCCcchhHHHHHHHHHHHhCCcEEEecccccCCCCCCEEEEECCC
Confidence            22221  12345555532110            000000012345577888888887654321 0  1124688987554


Q ss_pred             CCCCc
Q 048438          233 TLTEE  237 (239)
Q Consensus       233 ~~t~~  237 (239)
                      -.|++
T Consensus       418 ~it~~  422 (447)
T PRK06917        418 TITYS  422 (447)
T ss_pred             cCCHH
Confidence            44443

>PRK07483 hypothetical protein; Provisional

Probab=97.59  E-value=0.0044  Score=55.21  Aligned_cols=209  Identities=14%  Similarity=0.076  Sum_probs=100.8

Q ss_pred             EEEEEecCCC-CcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcc-c
Q 048438            6 LFLCATIGTT-AITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATL-D   79 (239)
Q Consensus         6 ~~vv~t~gtt-~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~-g   79 (239)
                      .+|++--..- .-|.+.|    +++|.++|++||+.+++|..+.+.--...-+.....++. .|.+++  -|.+++-+ .
T Consensus       201 AAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~-PDiv~~--gK~l~gG~~P  277 (443)
T PRK07483        201 AAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTGTLFACEEDGVA-PDLVTI--AKGLGAGYQP  277 (443)
T ss_pred             EEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCcHHHHHhhcCCC-CCeeee--hhhhccCccc
Confidence            3444433332 3466665    899999999999999999998754222211111123444 898887  68876543 4


Q ss_pred             ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC-CCeEE
Q 048438           80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD-KRFEV  158 (239)
Q Consensus        80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~-~g~~~  158 (239)
                      .|.+++++ +......... ..+. ...+ ..+.+.......+.++.+..+   +..++..++.++|.+.|+++ ....+
T Consensus       278 i~av~~~~-~i~~~~~~~~-~~~~-h~~T-~~gnpl~~aaa~a~l~~i~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~  350 (443)
T PRK07483        278 IGAVLASD-RIYDAIADGS-GFFQ-HGHT-YLGHATACAAALAVQRVIAED---GLLANVRARGEQLRARLRERLGQHPH  350 (443)
T ss_pred             cEEEEEcH-HHHHHHhcCC-Cccc-cCCC-CCCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            67777654 3322111100 0000 0001 112222223333344444333   34455557788888877642 12222


Q ss_pred             EcCC--CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEE-EECC--EeEEEEEecCC
Q 048438          159 VFPC--HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNV-VLGG--IYAIRFATGAT  233 (239)
Q Consensus       159 ~~~~--~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-~~~g--~~~lR~~~~~~  233 (239)
                      +.+.  .--++.+.+......         .. +.+.  ..+....+.+.+.++|.++.... ..++  ..++|+.+---
T Consensus       351 i~~vRG~Glm~gie~~~~~~~---------~~-~~~~--~~~~~~~~~~~~~~~Gll~~~~~~~~~~~~~~~l~~~PpL~  418 (443)
T PRK07483        351 VGDIRGRGLFVGVELVADRAT---------KA-PFDP--ALKLHARIKREAMARGLMVYPMGGTIDGVRGDHVLLAPPFI  418 (443)
T ss_pred             eeeEeecccEEEEEEeecccc---------cC-CCCc--hhhHHHHHHHHHHHCCcEEEecCccccCCCCCEEEEECCCC
Confidence            2221  122444554321100         00 0000  12344567788888887754321 1111  25789875444


Q ss_pred             CCC
Q 048438          234 LTE  236 (239)
Q Consensus       234 ~t~  236 (239)
                      .|+
T Consensus       419 it~  421 (443)
T PRK07483        419 ITA  421 (443)
T ss_pred             CCH
Confidence            433

>PLN02368 alanine transaminase

Probab=97.59  E-value=0.0027  Score=55.94  Aligned_cols=154  Identities=10%  Similarity=-0.023  Sum_probs=83.4

Q ss_pred             ccEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCc-cc---ccccCCC----C-Ccc-eEEEcC
Q 048438            4 IPLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFP-EF---RHFIDGV----E-GAD-SFSLNA   70 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~-~~---~~~~~~~----~-~~D-s~~~~~   70 (239)
                      .+-+++.+.-+|.||.+.+   +++|+++|++||++++.|.+|+-....-. .+   ......+    + ... ++..++
T Consensus       210 ~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~DE~Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~Sf  289 (407)
T PLN02368        210 TVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGDEVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTV  289 (407)
T ss_pred             CeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcccHHHHHhhhcccccccceEEEEecC
Confidence            4556677777999999877   56677789999999999999865432110 01   0011111    1 112 445689


Q ss_pred             cccCC-Cc-ccceEEEe--eCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhC------------HHHHHH
Q 048438           71 HKWFF-AT-LDCCCLWA--TNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYG------------MENLRH  134 (239)
Q Consensus        71 hK~l~-~P-~g~g~l~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g------------~~g~~~  134 (239)
                      .|.++ .| .-+|.++.  ..++.+.......     ...+.      ...+..+++...+.            .+..++
T Consensus       290 SK~~~~~~GlRiGy~i~~~~~~~li~~~~~~~-----~~~~~------~~~~~Q~aa~~~l~~~~~~~~~~~~~~~~~~~  358 (407)
T PLN02368        290 SKGYWGECGQRGGYFEMTNIPPKTVEEIYKVA-----SIALS------PNVSGQIFMGLMVNPPKPGDISYDQFVRESKG  358 (407)
T ss_pred             CcccccCCccceEEEEEeCCCHHHHHHHHHHh-----cccCC------CCcHHHHHHHHHhCCCCCCCccHHHHHHHHHH
Confidence            99874 23 33676664  2333333222100     00011      11122222222221            011234


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCeEEEcCCCeeEEEE
Q 048438          135 FLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCF  169 (239)
Q Consensus       135 ~~~~~~~la~~l~~~l~~~~g~~~~~~~~~~iv~f  169 (239)
                      ..+...+..+.+.+.|++++|+.+. +|+.+...|
T Consensus       359 ~~~~~~~rr~~~~~~L~~~~g~~~~-~P~Gafy~~  392 (407)
T PLN02368        359 ILESLRRRARMMTDGFNSCKNVVCN-FTEGAMYSF  392 (407)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCeEeC-CCCeeeEec
Confidence            4566677888999999999998865 455554443

>PRK05839 hypothetical protein; Provisional

Probab=97.56  E-value=0.0032  Score=54.74  Aligned_cols=79  Identities=9%  Similarity=-0.053  Sum_probs=48.7

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccC--------CCCCcceEEEcCccc
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFID--------GVEGADSFSLNAHKW   73 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~--------~~~~~Ds~~~~~hK~   73 (239)
                      +-+|+++.-+|.||.+.+   +++|+++|+++|+++++|.+++-.... ........        ..+. =.++.++.|.
T Consensus       156 ~k~v~i~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~-~~~~s~~~~~~~~~~~~~~~-vi~~~SfSK~  233 (374)
T PRK05839        156 VDLVILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDECYSEIYEN-TPPPSLLEASILVGNESFKN-VLVINSISKR  233 (374)
T ss_pred             ccEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCCEEEeccchhhcccC-CCCCCHhhhhcccCccccCc-EEEEeccccc
Confidence            345566677899999776   566677789999999999998743210 00100010        0011 1567899997


Q ss_pred             CCCc-ccceEEEe
Q 048438           74 FFAT-LDCCCLWA   85 (239)
Q Consensus        74 l~~P-~g~g~l~~   85 (239)
                      ++.| .-+|.++.
T Consensus       234 ~~~~GlRiG~ii~  246 (374)
T PRK05839        234 SSAPGLRSGFIAG  246 (374)
T ss_pred             cCCccceeEEEec
Confidence            5444 44666665

>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

Probab=97.55  E-value=0.002  Score=56.22  Aligned_cols=157  Identities=11%  Similarity=0.011  Sum_probs=92.3

Q ss_pred             CccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcc
Q 048438            3 LIPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATL   78 (239)
Q Consensus         3 ~~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~   78 (239)
                      .....|++--.-.+.|.+-|    +++|.++|+++|+.|+.|....+.-+..--.+. .-++. .|..+  +-|.+++-.
T Consensus       199 ~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR~~~gGaq~-~~gi~-PDltt--lGKiIGGGl  274 (432)
T COG0001         199 DDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVALGGAQG-YYGVE-PDLTT--LGKIIGGGL  274 (432)
T ss_pred             CcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhcccCCccccc-ccCcC-cchhh--hhhhhcCCc
Confidence            34567777777788888888    678999999999999999988776554321111 23444 78765  458888877


Q ss_pred             cceEEEeeCcccccccccCCCCccCCCCceecCCC-CCChHHHHH---HHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC-
Q 048438           79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSR-SFRSLKLWF---VIRNYGMENLRHFLRSHVNMARLFERLVSGD-  153 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~-  153 (239)
                      .+|++-. +.+++....+..        +..+.|+ ....+.+.+   .++.+-.+  +...++..+++++|++.|++. 
T Consensus       275 P~ga~gG-r~eiM~~~~p~g--------~vyqaGT~sgnplamaAG~atl~~l~~~--~~~y~~l~~~~~~L~~gl~~~~  343 (432)
T COG0001         275 PIGAFGG-RAEIMEQLAPLG--------PVYQAGTLSGNPLAMAAGLATLEELMTE--EGVYERLDALGERLAEGLRAAA  343 (432)
T ss_pred             ceeeecc-HHHHHhhhCCCC--------CccccCCCCCcHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHH
Confidence            7777654 346665443221        1112222 223333333   34443321  113445556666666666542 


Q ss_pred             --CCeEEEcCCCeeEEEEEEcCC
Q 048438          154 --KRFEVVFPCHFAVVCFRVSPL  174 (239)
Q Consensus       154 --~g~~~~~~~~~~iv~f~~~~~  174 (239)
                        .|+.+.....-+++++.+.+.
T Consensus       344 ~~~g~~~~v~~~gsm~~i~F~~~  366 (432)
T COG0001         344 ERHGIPLTVNRVGSMFGIFFTEE  366 (432)
T ss_pred             HHhCCCeEEeeecceEEEEecCC
Confidence              255554444456777777653

>PLN02672 methionine S-methyltransferase

Probab=97.49  E-value=0.003  Score=61.49  Aligned_cols=210  Identities=9%  Similarity=0.069  Sum_probs=99.8

Q ss_pred             EEEEecCC-CCcccccC---hhHHHHHHHHhCCEEEEecccccccccCccc-----ccccCCCCC---c-c-eEEEcCcc
Q 048438            7 FLCATIGT-TAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEF-----RHFIDGVEG---A-D-SFSLNAHK   72 (239)
Q Consensus         7 ~vv~t~gt-t~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~-----~~~~~~~~~---~-D-s~~~~~hK   72 (239)
                      +|+++.-+ |.||.+.+   +++|+++|++||+++++|.+|+.-....+..     .........   . . ++..++.|
T Consensus       831 ~I~L~nPnhNPTG~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSK  910 (1082)
T PLN02672        831 WVYISGPTINPTGLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLST  910 (1082)
T ss_pred             EEEEECcCCCCcCccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHH
Confidence            34444444 99999765   6677888999999999999997433211110     000111100   0 1 24558886


Q ss_pred             cCCCc-ccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHh----C--HHHHHHHHHHHHHHHHH
Q 048438           73 WFFAT-LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNY----G--MENLRHFLRSHVNMARL  145 (239)
Q Consensus        73 ~l~~P-~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----g--~~g~~~~~~~~~~la~~  145 (239)
                      .++.| .-+|+++..++.++......    ..   ..  .......+....++..+    +  .+.+++..+...+..++
T Consensus       911 kf~lpGLRIGylIap~~eLi~~l~~~----~~---~s--~~~~~~q~Aaaaalall~~~~~~~~~~l~e~r~~Lk~rRd~  981 (1082)
T PLN02672        911 ELLSGGHEFGFLALNDSVLIDAFHSA----PG---LS--RPHSTLKYTIKKLLGLKNQKSSDLLDGVAEQKKILKSRAER  981 (1082)
T ss_pred             hhccHHHHheeEEeCCHHHHHHHHHh----hh---hc--CCCcHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHH
Confidence            65554 33777776433333322110    00   00  00000111222222211    1  12344455556677888


Q ss_pred             HHHHHhCCCCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEE-CCEe
Q 048438          146 FERLVSGDKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVL-GGIY  224 (239)
Q Consensus       146 l~~~l~~~~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~-~g~~  224 (239)
                      +.+.|++. |+++. +|+.+...+.-.+..... ..+..    .....+..+.-...+.+.|.++..+.+.+..+ ....
T Consensus       982 L~e~L~~~-Gi~v~-~PeGGFfLwl~l~~~l~~-~~~~~----~~~~~~~~~lds~efae~LLee~GVaV~PGs~FG~~g 1054 (1082)
T PLN02672        982 LKETLEAC-GWDVL-EPQGGISMVAKPSAYLGK-TVKLK----SIDGDTGIKLDSSNIREAILKSTGLCINSSSWTGIPG 1054 (1082)
T ss_pred             HHHHHHHC-CCeEe-cCCcEEEEEEEccccccc-ccccc----ccccccccCCCHHHHHHHHHHcCCEEEecCcccCCCC
Confidence            88999886 88765 566665555422110000 00000    00000000001236777777664444444333 3357


Q ss_pred             EEEEEecC
Q 048438          225 AIRFATGA  232 (239)
Q Consensus       225 ~lR~~~~~  232 (239)
                      ++|+++..
T Consensus      1055 ~~RIsfa~ 1062 (1082)
T PLN02672       1055 YCRFSFAL 1062 (1082)
T ss_pred             eEEEEecC
Confidence            89999875

>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor

Probab=97.49  E-value=0.0002  Score=61.04  Aligned_cols=70  Identities=19%  Similarity=0.235  Sum_probs=40.0

Q ss_pred             ccChhHHHHHHHHhCCEEEEecccccccccCc--------ccccccCCCCCcceEEEcCcccCCCcccceEEEeeCcccc
Q 048438           20 VDPLKPLCDVAKQFGIWVHVDAAYAGSACIFP--------EFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWATNPEYL   91 (239)
Q Consensus        20 i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~--------~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~l   91 (239)
                      --+++++++++|+|++++++|.+-|.- .++.        ..+..++  .++|.++||+-|.|++|. +|+++-+ .+++
T Consensus       156 ~~~~~el~~la~~~~lp~i~DlgsG~l-~dl~~~gl~~Ep~v~~~~~--~GaDlV~fSGdKlLGGPQ-aGiI~Gk-k~lI  230 (367)
T PF03841_consen  156 EVSLEELAELAKEHGLPVIVDLGSGLL-VDLSPYGLPDEPTVQEYLA--AGADLVTFSGDKLLGGPQ-AGIIVGK-KELI  230 (367)
T ss_dssp             -----HHHHHHHHHT--EEEE-TTHHH-HHHHTT----------CCC--CT-SEEEEETTSSSSS-S--EEEEEE-HHHH
T ss_pred             cccHHHHHHHHhhcCCcEEEECCCCCC-cCcccccCccccHHHHHhh--cCCCEEEEECCCcCCCCC-eEEEEeC-HHHH
Confidence            347999999999999999999976432 1111        1111222  269999999999999998 6877764 4565


Q ss_pred             ccc
Q 048438           92 KNK   94 (239)
Q Consensus        92 ~~~   94 (239)
                      ...
T Consensus       231 ~~l  233 (367)
T PF03841_consen  231 EKL  233 (367)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.

>PRK07046 aminotransferase; Validated

Probab=97.41  E-value=0.0088  Score=53.45  Aligned_cols=74  Identities=18%  Similarity=0.238  Sum_probs=50.7

Q ss_pred             cEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccc----cccccCcccccccCCCCCcceEEEcCcccCCC
Q 048438            5 PLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYA----GSACIFPEFRHFIDGVEGADSFSLNAHKWFFA   76 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~----~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~   76 (239)
                      ..+|++--.....|.+-|    +++|.++|++||+.+++|..+.    .|-.     .. ..++. .|.+++  -|.+++
T Consensus       219 vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~tfr~g~Gg~-----~~-~~gv~-PDi~t~--gK~lgg  289 (453)
T PRK07046        219 VAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHTISSGPGGY-----TR-AHGLE-PDFLVV--GKPIAG  289 (453)
T ss_pred             eEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccccCccCCcch-----hH-HhCCC-ccceee--hhhhcC
Confidence            345555555555677766    7999999999999999999984    2211     11 22554 898875  788876


Q ss_pred             cccceEEEeeC
Q 048438           77 TLDCCCLWATN   87 (239)
Q Consensus        77 P~g~g~l~~~~   87 (239)
                      -..+|++..++
T Consensus       290 G~Pi~av~g~~  300 (453)
T PRK07046        290 GVPCAVYGFSA  300 (453)
T ss_pred             CCcceeeeehH
Confidence            56678777643

>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional

Probab=97.35  E-value=0.0066  Score=52.67  Aligned_cols=78  Identities=14%  Similarity=-0.021  Sum_probs=49.8

Q ss_pred             cEEEEEecCCCCccccc-C---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438            5 PLFLCATIGTTAITAVD-P---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC   80 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~-p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~   80 (239)
                      +.+|++.......|.+- |   +++|.++|++||+.++.|.+|.+. -....+.....++. .|.+++  -|.+++-...
T Consensus       163 ~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~-RtG~~~a~~~~gv~-PDiv~~--gK~lggG~P~  238 (364)
T PRK04013        163 TAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL-RTGKFLAIEHYKVE-PDIVTM--GKGIGNGVPV  238 (364)
T ss_pred             cEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcC-CCCchhHHHhcCCC-CCEEEe--cccccCCcee
Confidence            34555555544455544 3   999999999999999999998854 21111111123443 888877  6887664556


Q ss_pred             eEEEee
Q 048438           81 CCLWAT   86 (239)
Q Consensus        81 g~l~~~   86 (239)
                      |.++.+
T Consensus       239 ~a~~~~  244 (364)
T PRK04013        239 SLTLTN  244 (364)
T ss_pred             EEEEec
Confidence            666654

>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]

Probab=97.34  E-value=0.003  Score=54.06  Aligned_cols=203  Identities=12%  Similarity=0.006  Sum_probs=109.4

Q ss_pred             cEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438            5 PLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC   80 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~   80 (239)
                      +...++-...-.-|++.+    +++..++|+++|..++.|.+|.+..-....|.-.-.++ -.|.++  .-|+++.-...
T Consensus       213 vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfGRtG~~wgfe~h~v-~PDIvT--mAKgiGnG~Pl  289 (442)
T KOG1404|consen  213 VAAFIAETIQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFGRTGHMWGFESHGV-VPDIVT--MAKGIGNGFPL  289 (442)
T ss_pred             eeEEEeehhccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhccccccccccccccCC-CccHHH--HHhhccCCCcc
Confidence            344444444444577776    78999999999999999999887544332111001222 256554  56888877777


Q ss_pred             eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC-CCeEEE
Q 048438           81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD-KRFEVV  159 (239)
Q Consensus        81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~-~g~~~~  159 (239)
                      |.++.. ++...-..+.. .     .+...++.+..+..-.+.|+-+-++.   ..++..+...||.+.|.++ .+.+++
T Consensus       290 ~AVvtt-~EIa~v~~~~~-~-----~fnTyggnP~a~avg~aVL~Vikee~---LqE~aa~vG~yl~~~l~~l~d~h~iI  359 (442)
T KOG1404|consen  290 GAVVTT-PEIADVLNQKS-S-----HFNTYGGNPVACAVGLAVLKVIKEEN---LQENAAEVGSYLLEKLAALKDKHPII  359 (442)
T ss_pred             eeeecC-HHHHHHHHhcc-c-----cccccCCCchhHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHhhcCCce
Confidence            777763 33221111100 0     12222344443333344555554554   4455569999999999875 346666


Q ss_pred             cCCC--eeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCC
Q 048438          160 FPCH--FAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTE  236 (239)
Q Consensus       160 ~~~~--~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~  236 (239)
                      ++.+  --|+-..+.....          ...+..    ......+.+++.+.|.+. ....+.|. ++|+++----|.
T Consensus       360 GdVRG~GLm~GvE~V~dk~----------~~~pp~----~~~~~~i~~~cke~Gvlv-g~g~i~G~-vfriaPPlciT~  422 (442)
T KOG1404|consen  360 GDVRGRGLMLGVELVSDKS----------EPKPPA----TAEGAVIGEQCKELGVLV-GKGGIHGN-VFRIAPPLCITK  422 (442)
T ss_pred             eecccceeEEEEEEecccC----------CCCCcc----hHHHHHHHHHHHHhCeee-ecccccce-EEEecCCeeccH
Confidence            6643  1233333332110          000001    233346677777766654 43334455 889876544443

>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]

Probab=97.34  E-value=0.0043  Score=53.42  Aligned_cols=206  Identities=17%  Similarity=0.101  Sum_probs=108.8

Q ss_pred             CCccEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCccccccc---CCCC-Ccce--EEEcCcc
Q 048438            2 GLIPLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFI---DGVE-GADS--FSLNAHK   72 (239)
Q Consensus         2 g~~p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~---~~~~-~~Ds--~~~~~hK   72 (239)
                      |...--|++|--+|..|++.+   +..+...|+++++.+++|..+++....-.++....   .... ..|.  ++.+..|
T Consensus       224 ~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~sVF~~~~F~Sv~ev~~~~~~~~~rvHivyslSK  303 (471)
T KOG0256|consen  224 GLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYAGSVFDKSEFRSVLEVRKDPHLDPDRVHIVYSLSK  303 (471)
T ss_pred             CCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhcccccCccCceEHHHHhhccccCCCcEEEEEEecc
Confidence            445557888999999999877   45556667899999999999988766544443311   1110 1233  5778999


Q ss_pred             cCCCc-ccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHH--HHhCHHHHHHHHHHHHHHHHHHHHH
Q 048438           73 WFFAT-LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVI--RNYGMENLRHFLRSHVNMARLFERL  149 (239)
Q Consensus        73 ~l~~P-~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~g~~g~~~~~~~~~~la~~l~~~  149 (239)
                      =++.| .-.|++|..+.........-       ..+.+-.+  .....+...|  +.+..+=+++..++....-+++.++
T Consensus       304 D~GlpGfRvGviYS~ne~VvsaA~km-------ssf~~vSs--~tQ~~la~LLSD~~f~~~yl~en~~Rl~~rh~~~~~g  374 (471)
T KOG0256|consen  304 DFGLPGFRVGVIYSNNEDVVSAATKM-------SSFGLVSS--QTQYLLASLLSDEEFTREYLRENNKRLRIRHRYIVEG  374 (471)
T ss_pred             ccCCCceEEEEEEecChHHHHHHHHH-------hhccCCcH--HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            88776 23677776554332222100       00110000  0000111111  1122223344444555666788999


Q ss_pred             HhCCCCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEE---CCEeEE
Q 048438          150 VSGDKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVL---GGIYAI  226 (239)
Q Consensus       150 l~~~~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~---~g~~~l  226 (239)
                      |++. |+..+ +...++.|+.=-..-+.              +...-.++  .+.+++...-++.+++...   ...+|+
T Consensus       375 Lk~l-gI~cl-~s~AGlF~wvDlr~lL~--------------s~tfe~El--~Lw~~i~~~vklnlSpG~s~~C~EpGWF  436 (471)
T KOG0256|consen  375 LKAL-GIPCL-KSNAGLFCWVDLRKLLT--------------SLTFEGEL--ELWERILDNVKLNLSPGSSCHCHEPGWF  436 (471)
T ss_pred             HHhc-CCcee-ecCCeeEEEEEhHHhcC--------------cCChHHHH--HHHHHHHHhhccccCCCCcceecCCCeE
Confidence            9986 88877 44566655542111110              00001112  4455555443444444221   245799


Q ss_pred             EEEecCCC
Q 048438          227 RFATGATL  234 (239)
Q Consensus       227 R~~~~~~~  234 (239)
                      |+|+.|..
T Consensus       437 RvcFAn~~  444 (471)
T KOG0256|consen  437 RVCFANMS  444 (471)
T ss_pred             EEEeccCC
Confidence            99987653

>PLN02397 aspartate transaminase

Probab=97.30  E-value=0.0041  Score=55.06  Aligned_cols=80  Identities=13%  Similarity=-0.034  Sum_probs=50.1

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCc--cccc--ccCCCCCcceEEEcCcccCCCc
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFP--EFRH--FIDGVEGADSFSLNAHKWFFAT   77 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~--~~~~--~~~~~~~~Ds~~~~~hK~l~~P   77 (239)
                      ..+++.+.-+|.||.+.+   +++|+++|++||+++++|.+|......-.  ....  .......-=.++.++.|.++.|
T Consensus       195 ~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~  274 (423)
T PLN02397        195 SFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVEDGHEILVAQSYAKNMGLY  274 (423)
T ss_pred             CEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccCCccCCchhhhhHHHHHHHhcCCcEEEEEECcccCCCc
Confidence            467777778899999866   56678889999999999999865432100  0000  0111110114566999997643


Q ss_pred             -ccceEEE
Q 048438           78 -LDCCCLW   84 (239)
Q Consensus        78 -~g~g~l~   84 (239)
                       .-+|.++
T Consensus       275 G~RvG~~v  282 (423)
T PLN02397        275 GERVGALS  282 (423)
T ss_pred             cccceEEE
Confidence             3367764

>PTZ00376 aspartate aminotransferase; Provisional

Probab=97.29  E-value=0.0032  Score=55.32  Aligned_cols=79  Identities=15%  Similarity=-0.010  Sum_probs=50.4

Q ss_pred             EEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCc--cccc--ccCCCCCcceEEEcCcccCCCc-
Q 048438            6 LFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFP--EFRH--FIDGVEGADSFSLNAHKWFFAT-   77 (239)
Q Consensus         6 ~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~--~~~~--~~~~~~~~Ds~~~~~hK~l~~P-   77 (239)
                      .+++...-+|.||.+.+   +++|+++|++|++++++|.++........  ....  .......-=+++.|+.|.++.| 
T Consensus       178 ~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~G  257 (404)
T PTZ00376        178 VVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAERGVEFLVAQSFSKNMGLYG  257 (404)
T ss_pred             EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCcccccc
Confidence            56777888899999766   56778889999999999999864332110  0000  0111110115677999998754 


Q ss_pred             ccceEEE
Q 048438           78 LDCCCLW   84 (239)
Q Consensus        78 ~g~g~l~   84 (239)
                      .-+|+++
T Consensus       258 lRvG~~~  264 (404)
T PTZ00376        258 ERIGALH  264 (404)
T ss_pred             cccceEE
Confidence            4477764

>PRK08637 hypothetical protein; Provisional

Probab=97.29  E-value=0.018  Score=50.27  Aligned_cols=81  Identities=11%  Similarity=0.000  Sum_probs=46.7

Q ss_pred             EEEEEecCCCCcccccC---hhHHHHHHHH-----hCCEEEEecccccccccCccccc---ccCCC-CCcceEE-EcCcc
Q 048438            6 LFLCATIGTTAITAVDP---LKPLCDVAKQ-----FGIWVHVDAAYAGSACIFPEFRH---FIDGV-EGADSFS-LNAHK   72 (239)
Q Consensus         6 ~~vv~t~gtt~~G~i~p---l~~i~~i~~~-----~gi~lhvD~A~~~~~~~~~~~~~---~~~~~-~~~Ds~~-~~~hK   72 (239)
                      .+++.+.-+|.||.+.+   +++|+++|++     |++++++|.++.-....-.....   ...+. +.+-++. .++.|
T Consensus       148 ~~~~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK  227 (388)
T PRK08637        148 VIVILNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDSYKESLFAALANLHSNILAVKLDGATK  227 (388)
T ss_pred             EEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecccchhcccCCccchhhHHHhhcccccceEEEeccccc
Confidence            44555666899998766   5666676665     89999999998643221111100   01111 1232332 38999


Q ss_pred             cCCCc-ccceEEEee
Q 048438           73 WFFAT-LDCCCLWAT   86 (239)
Q Consensus        73 ~l~~P-~g~g~l~~~   86 (239)
                      .++.| .=+|.+++.
T Consensus       228 ~~~~pGlRlG~~~~~  242 (388)
T PRK08637        228 EEFVWGFRVGFITFG  242 (388)
T ss_pred             cCCCcccceEEEEEc
Confidence            75555 337777753

>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional

Probab=97.24  E-value=0.012  Score=52.33  Aligned_cols=78  Identities=12%  Similarity=-0.021  Sum_probs=45.8

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLW   84 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~   84 (239)
                      +.+|++-....+.+...++++|.++|++||+.+++|.+|.+... .........++. .|.++  .-|.+++-...|.+.
T Consensus       188 ~aavi~Epv~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~-~~~g~~~~~gv~-PDi~t--~gK~lggG~p~~av~  263 (431)
T PRK06209        188 IACVILEPATADEPQDGFLHEVRRLCHENGALFILDEMITGFRW-HMRGAQKLYGIV-PDLSC--FGKALGNGFAVSALA  263 (431)
T ss_pred             EEEEEEccccCCCCCHHHHHHHHHHHHHcCCEEEEEcccccCCc-CcchhhHHhCCC-cceee--ehhhhcCCcccEEEE
Confidence            33444433333333344499999999999999999999865422 110000012443 78755  579987633355566


Q ss_pred             ee
Q 048438           85 AT   86 (239)
Q Consensus        85 ~~   86 (239)
                      .+
T Consensus       264 ~~  265 (431)
T PRK06209        264 GK  265 (431)
T ss_pred             EH
Confidence            54

>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

Probab=97.24  E-value=0.013  Score=52.48  Aligned_cols=199  Identities=14%  Similarity=0.080  Sum_probs=106.0

Q ss_pred             cEEEEEecCCCCcccccCh---hHHHHHHHHhCCEEEEecccccccccCcccccccCCC--CCcceEEEcCcccCCCccc
Q 048438            5 PLFLCATIGTTAITAVDPL---KPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGV--EGADSFSLNAHKWFFATLD   79 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl---~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~--~~~Ds~~~~~hK~l~~P~g   79 (239)
                      -++.+.....|.||...++   ++|.++|++|++|++=|..++-....-..... +..+  .+==++..++.|.+..-..
T Consensus       228 k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~-l~~ld~~~rViy~gSFSK~l~PglR  306 (459)
T COG1167         228 KAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPP-LKALDAPGRVIYLGSFSKTLAPGLR  306 (459)
T ss_pred             cEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCC-hHhhCCCCCEEEEeeehhhcccccc
Confidence            3566666778999999887   56999999999999999988754432211110 1111  1234678899999886677


Q ss_pred             ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHHhCCCC-e
Q 048438           80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYG--MENLRHFLRSHVNMARLFERLVSGDKR-F  156 (239)
Q Consensus        80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g--~~g~~~~~~~~~~la~~l~~~l~~~~g-~  156 (239)
                      +|.+... +.++....... ...+      ..+..+....+...+. -|  ..-+++..+...+..+.+.+.|++..+ .
T Consensus       307 lG~vv~p-~~~~~~~~~~k-~~~~------~~~s~~~Q~~la~~l~-~G~~~~hl~~lR~~y~~rr~~l~~~L~~~~~~~  377 (459)
T COG1167         307 LGYVVAP-PELIEKLLRLK-QAAD------LGPSSLSQAALAAFLL-SGHYDRHLRRLRREYARRRDALLEALAEYLPEL  377 (459)
T ss_pred             eeeeeCC-HHHHHHHHHHH-HHhc------CCCChHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            7777763 23332221100 0000      0011111122222233 22  122333333344455666677766532 2


Q ss_pred             EEEcCCCee-EEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEE-EEEEC----CEeEEEEEe
Q 048438          157 EVVFPCHFA-VVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMT-NVVLG----GIYAIRFAT  230 (239)
Q Consensus       157 ~~~~~~~~~-iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~-~~~~~----g~~~lR~~~  230 (239)
                      ..+..|..+ -+..++++.-                     +  ...+.++..++|..+.. .....    ....+|+++
T Consensus       378 ~~~~~p~gG~flwl~l~~~~---------------------~--~~~l~~~a~~~gv~i~~~g~~f~~~~~~~~~~Rl~~  434 (459)
T COG1167         378 ATWTRPEGGLFLWLELPEGI---------------------D--ARELLAAALEKGVVVTPLGSAFSADGDPRNGLRLSF  434 (459)
T ss_pred             eeeecCCceEEEEEEcCCCC---------------------C--HHHHHHHHHHCCCEEEcCCccccCCCCCCCeEEEEc
Confidence            233344444 3444554421                     1  12566667777777665 33321    346899998


Q ss_pred             cCCCCC
Q 048438          231 GATLTE  236 (239)
Q Consensus       231 ~~~~t~  236 (239)
                      .++..+
T Consensus       435 s~~~~e  440 (459)
T COG1167         435 SSPSEE  440 (459)
T ss_pred             CCCCHH
Confidence            877643

>PRK09257 aromatic amino acid aminotransferase; Provisional

Probab=97.20  E-value=0.0078  Score=52.68  Aligned_cols=80  Identities=16%  Similarity=0.005  Sum_probs=50.8

Q ss_pred             EEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcc-ccc--ccCCCCCcceEEEcCcccCCC-cc
Q 048438            6 LFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPE-FRH--FIDGVEGADSFSLNAHKWFFA-TL   78 (239)
Q Consensus         6 ~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~-~~~--~~~~~~~~Ds~~~~~hK~l~~-P~   78 (239)
                      .+++.+..+|.||.+.+   +++|+++|++|+++++.|.++......... ...  .+.+...-=+++.|+.|.++. -.
T Consensus       174 ~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~Gl  253 (396)
T PRK09257        174 VVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAAGLELLVASSFSKNFGLYGE  253 (396)
T ss_pred             EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHhcCCcEEEEEEcCCcCccccc
Confidence            56666778899999766   577888899999999999998653211000 000  011111012567899999764 24


Q ss_pred             cceEEEe
Q 048438           79 DCCCLWA   85 (239)
Q Consensus        79 g~g~l~~   85 (239)
                      -+|++++
T Consensus       254 RiG~~~~  260 (396)
T PRK09257        254 RVGALSV  260 (396)
T ss_pred             cceeEEE
Confidence            4677663

>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]

Probab=97.19  E-value=0.028  Score=48.14  Aligned_cols=210  Identities=11%  Similarity=0.050  Sum_probs=114.1

Q ss_pred             ccEEEEEecCCCCcccc---cChhHHHHHHHHhCCEEEEecccccccccCcccc--cccCCCCCcceEEE-cCcccCCCc
Q 048438            4 IPLFLCATIGTTAITAV---DPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFR--HFIDGVEGADSFSL-NAHKWFFAT   77 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i---~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~--~~~~~~~~~Ds~~~-~~hK~l~~P   77 (239)
                      ..+++++.--+|..|.+   +-|++|+++|+++|+.++-|..++=.......+-  ..+..  .+-+++. +..|....|
T Consensus       199 NT~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fss--iVPVitlggisKrW~VP  276 (447)
T KOG0259|consen  199 NTVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSS--IVPVITLGGISKRWIVP  276 (447)
T ss_pred             CeeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchhhccc--cCceEeecccccccccC
Confidence            35677777778888885   5599999999999999999998753322111111  01222  2555654 567766666


Q ss_pred             -ccceEEEeeCccc-ccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 048438           78 -LDCCCLWATNPEY-LKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKR  155 (239)
Q Consensus        78 -~g~g~l~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g  155 (239)
                       .-.|.+.+.++.- +.....-. +..++.+......+ +-..++-..|..--.+=+.....-....++...+.|+++|+
T Consensus       277 GWRlGWi~~hD~~gvf~~~~~~q-~~~~~~~~~~~p~T-iiQ~AlP~IL~kTp~efF~k~~~~lk~na~l~y~~Lk~IP~  354 (447)
T KOG0259|consen  277 GWRLGWIALHDPRGVFRDTKVVQ-GIKNFLDIIPGPAT-IIQGALPDILEKTPEEFFDKKLSFLKSNADLCYSRLKDIPC  354 (447)
T ss_pred             CceeeeEEEecccccccchHHHH-HHHHHHhccCCccH-hHHHHhHHHHHhChHHHHHHHHHHHHhhHHHHHHHHhcCCC
Confidence             3367777655421 11110000 00000000000000 11122223344444566677777788899999999999999


Q ss_pred             eEEEcCCCeeEEE-EEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhc-CcEEEEEEEECCEeEEEEEecCC
Q 048438          156 FEVVFPCHFAVVC-FRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINAS-GKAYMTNVVLGGIYAIRFATGAT  233 (239)
Q Consensus       156 ~~~~~~~~~~iv~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~g~~~lR~~~~~~  233 (239)
                      +.....|+..+-. +.+.-. ..         ++..++        ..++.+|.++ ..+.++.+.+.-++|+|+++.-+
T Consensus       355 l~cp~kPeg~mylmv~l~~s-~~---------~~~~dD--------~dFc~kL~~Eesv~~LPG~af~~~nw~Ri~i~~~  416 (447)
T KOG0259|consen  355 LTCPVKPEGCMYLMVKLNLS-LF---------PDIEDD--------VDFCQKLAREESVICLPGQAFGLKNWLRIVITVE  416 (447)
T ss_pred             cccCcCCCcceEEEeccchh-hh---------cccccc--------HHHHHHHhhhcceEEeccccccCCCeEEEEEccC
Confidence            9865555543321 111100 00         000111        1455555444 44566667776789999998765


Q ss_pred             CC
Q 048438          234 LT  235 (239)
Q Consensus       234 ~t  235 (239)
                      ..
T Consensus       417 ~~  418 (447)
T KOG0259|consen  417 EE  418 (447)
T ss_pred             hH
Confidence            43

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=97.13  E-value=0.024  Score=54.17  Aligned_cols=81  Identities=17%  Similarity=0.005  Sum_probs=51.3

Q ss_pred             ccEEEEEecC-CCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-
Q 048438            4 IPLFLCATIG-TTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-   77 (239)
Q Consensus         4 ~p~~vv~t~g-tt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-   77 (239)
                      ...+|++--. ...-|.+.|    +++|.++|++||+.+++|..+.+..-....+.....++. .|.++++  |.|.+- 
T Consensus       584 ~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~~fa~e~~gv~-PDIi~~g--KgLtgG~  660 (817)
T PLN02974        584 HIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVESAWELLGCK-PDIACYA--KLLTGGL  660 (817)
T ss_pred             CEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccchhhHHhcCCC-CCEEeec--ccccCCC
Confidence            3445555442 233466655    799999999999999999998765332222211133443 8988864  887654 


Q ss_pred             ccceEEEeeC
Q 048438           78 LDCCCLWATN   87 (239)
Q Consensus        78 ~g~g~l~~~~   87 (239)
                      ...|.+++++
T Consensus       661 ~Plaa~l~~~  670 (817)
T PLN02974        661 VPLAATLATE  670 (817)
T ss_pred             CccEEEEEcH
Confidence            2467777754

>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]

Probab=97.12  E-value=0.0042  Score=56.44  Aligned_cols=146  Identities=20%  Similarity=0.247  Sum_probs=87.9

Q ss_pred             EEEEecCCCCcccccC-hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc-----
Q 048438            7 FLCATIGTTAITAVDP-LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC-----   80 (239)
Q Consensus         7 ~vv~t~gtt~~G~i~p-l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~-----   80 (239)
                      ++.+|.-+| .|.+.| |++++++.|+||--+.+|||-.-.++-+..     .|--++|+--.+.||.++.|-|.     
T Consensus       683 a~MvTYPST-~GvfE~~i~d~cd~iHehGGQVYlDGANMNAqVGlc~-----pGd~GaDV~HLNLHKTFcIPHGGGGPg~  756 (1001)
T KOG2040|consen  683 ALMVTYPST-HGVFEEGIDDICDIIHEHGGQVYLDGANMNAQVGLCR-----PGDIGADVCHLNLHKTFCIPHGGGGPGM  756 (1001)
T ss_pred             eeEEecccc-cccccccHHHHHHHHHhcCCEEEecCCCccceecccC-----CccccccceeecccceeeecCCCCCCCC
Confidence            444555555 677765 999999999999999999974332221211     11124999999999999888553     


Q ss_pred             eEEEeeC--cccccccccCCCC-ccCCCCceecCCCCCCh---HH-HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC
Q 048438           81 CCLWATN--PEYLKNKATESKP-VVDYKDWQITLSRSFRS---LK-LWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD  153 (239)
Q Consensus        81 g~l~~~~--~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~-~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~  153 (239)
                      |-+-|++  ..||..-..-... .-+.....--.+-++++   ++ .|+.++.+|..|+...-+-..-+++|+.++|++.
T Consensus       757 gPIgVK~HLapfLP~HpVvs~~~~~~~~~~gsVsaaP~Gsa~ILpISwaYikmMG~~GL~~as~~AiLNaNYMakRLe~h  836 (1001)
T KOG2040|consen  757 GPIGVKKHLAPFLPSHPVVSPGRPEDTSPVGSVSAAPWGSALILPISWAYIKMMGSGGLKDASKIAILNANYMAKRLESH  836 (1001)
T ss_pred             CccchhhhccccCCCCCccCCCCCCCCCCccceeccCCCcceeehhHHHHHHHhcccccchhhHHHhhhhHHHHHHHhhc
Confidence            4444432  1222211100000 00000011111122222   22 4778999999999888888888999999999874


Q ss_pred             CCeEEEc
Q 048438          154 KRFEVVF  160 (239)
Q Consensus       154 ~g~~~~~  160 (239)
                        .+++.
T Consensus       837 --Ykil~  841 (1001)
T KOG2040|consen  837 --YKILF  841 (1001)
T ss_pred             --cceeE
Confidence              45443

>KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis]

Probab=97.09  E-value=0.00015  Score=58.78  Aligned_cols=121  Identities=15%  Similarity=0.154  Sum_probs=79.0

Q ss_pred             ccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEEeeCcccccccccCCC
Q 048438           20 VDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWATNPEYLKNKATESK   99 (239)
Q Consensus        20 i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~l~~~~~~~~   99 (239)
                      -|.+++|+.||..|+++-+|.-|+|.-.-.+-..-.......++|.++-+.-|.+..|.|.+++..-+..++.....   
T Consensus       173 pd~leaiaaica~~diphivnnayglqsee~i~~iaa~~~~grida~vqsldknf~vpvggaiia~fk~n~iq~iak---  249 (432)
T KOG3843|consen  173 PDNLEAIAAICAAHDIPHIVNNAYGLQSEECIHKIAAAAECGRIDAFVQSLDKNFMVPVGGAIIAAFKDNFIQEIAK---  249 (432)
T ss_pred             CchHHHHHHHHHccCchhhhccccccchHHHHHHHHHHhhhccHHHHHHHhhhcceeecchhHhhHhHHHHHHHHHH---
Confidence            68899999999999999999999986432211000001223469999999999999999876654333344443321   


Q ss_pred             CccCCCCceecCCCC--CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhC
Q 048438          100 PVVDYKDWQITLSRS--FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSG  152 (239)
Q Consensus       100 ~~~~~~~~~~~~~~~--~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~  152 (239)
                               ...||.  ..++-+...+-.+|..++.+......++--+++..+.+
T Consensus       250 ---------~ypgrasa~ps~dllitll~~gqn~f~e~~~eqkemf~~l~~ki~~  295 (432)
T KOG3843|consen  250 ---------MYPGRASASPSLDLLITLLSLGQNAFKELFGEQKEMFLKLRNKIIK  295 (432)
T ss_pred             ---------hCCCccccCccHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHH
Confidence                     112332  23355666677788888888777766766666666644

>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

Probab=96.76  E-value=0.029  Score=49.53  Aligned_cols=177  Identities=10%  Similarity=0.061  Sum_probs=86.4

Q ss_pred             cccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCC-cccceEEEeeCcccc
Q 048438           17 ITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFA-TLDCCCLWATNPEYL   91 (239)
Q Consensus        17 ~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~-P~g~g~l~~~~~~~l   91 (239)
                      .|.+.|    ++++.++|++|||.|+.|..-.++--...-+.....++. .|.+++  -|.|.+ -...|.+++++. ..
T Consensus       228 gG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGRTG~~FA~e~~gi~-PDi~~~--aKGLT~GY~Pl~a~l~~~~-I~  303 (449)
T COG0161         228 GGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTGKMFACEHAGIV-PDILCL--AKGLTGGYLPLSAVLTSDR-IY  303 (449)
T ss_pred             CCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCcCchhhhhhhcCCC-CCeeee--cccccccchhhHhHhhhHH-HH
Confidence            566665    799999999999999999964432111111111123443 888876  477643 122344555432 11


Q ss_pred             cccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhC-CCCeEEEcCCC-ee-EEE
Q 048438           92 KNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSG-DKRFEVVFPCH-FA-VVC  168 (239)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~-~~g~~~~~~~~-~~-iv~  168 (239)
                      ..........+. +.+++. +.+..+....+.|+.+-.++   .+++..++..+|.+.|++ +.+...+.+.+ .+ |..
T Consensus       304 ~~~~~~~~~~f~-HG~TYs-ghPlacAaAla~L~i~e~e~---l~~~~~~~~~~l~~~L~~~l~~~p~VgdVR~~Gli~~  378 (449)
T COG0161         304 EAFSDGDAGAFM-HGHTYS-GNPLACAAALANLDILEEED---LLERVAEIGAYLQAGLQAALADHPLVGDVRGLGLIGA  378 (449)
T ss_pred             HHHhcccCCeec-cCCccc-cCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHhcccCCcEEEeeccceEEE
Confidence            111111001110 112211 22222222223344444444   444555899999999987 44333444432 23 444


Q ss_pred             EEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEE
Q 048438          169 FRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMT  216 (239)
Q Consensus       169 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~  216 (239)
                      +.+..+...            ..+  .-.+...++.+...++|.+..+
T Consensus       379 iElv~d~~t------------~~~--f~~~~~~~~~~~~~e~Gl~iRp  412 (449)
T COG0161         379 IELVADKAT------------KTP--FEARVGARVRAAALERGLLIRP  412 (449)
T ss_pred             EEEeccccc------------ccc--hhhhHHHHHHHHHHHCCeEEee
Confidence            455432110            000  0134445677777778777654

>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]

Probab=96.72  E-value=0.0076  Score=52.01  Aligned_cols=161  Identities=10%  Similarity=0.001  Sum_probs=89.2

Q ss_pred             ccEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCccccc--ccCCCCCcceEEEcCcccCCCc-
Q 048438            4 IPLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRH--FIDGVEGADSFSLNAHKWFFAT-   77 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~--~~~~~~~~Ds~~~~~hK~l~~P-   77 (239)
                      ++-+|+++.-+|.+|.+.+   |++|+++|++||++++.|.++.-....-.++-.  .+.++-..-.=+.|+.|.++.. 
T Consensus       172 kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~aslPgm~ertitvgS~gKtf~~TG  251 (420)
T KOG0257|consen  172 KTKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASLPGMYERTITVGSFGKTFGVTG  251 (420)
T ss_pred             CccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecCCchhheEEEeccccceeeeee
Confidence            3567888999999999876   889999999999999999998644332221110  0122222334466888986542 


Q ss_pred             ccceEEEeeCcccccccccCCCCccCCCCceecCCCCCCh---HHHHHHH--HHhCH-HHHHHHHHHHHHHHHHHHHHHh
Q 048438           78 LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRS---LKLWFVI--RNYGM-ENLRHFLRSHVNMARLFERLVS  151 (239)
Q Consensus        78 ~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l--~~~g~-~g~~~~~~~~~~la~~l~~~l~  151 (239)
                      .=.|.++. .+..+.....-      ..+..+.+.+.+..   .++...+  ...+. .-+++..+...+..+.+.+.|.
T Consensus       252 WrlGW~ig-p~~L~~~~~~v------h~~~~~~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~krdil~k~L~  324 (420)
T KOG0257|consen  252 WRLGWAIG-PKHLYSALFPV------HQNFVFTCPTPIQEASAAAFALELACLQPGGSYFITELVKEYKEKRDILAKALE  324 (420)
T ss_pred             eeeeeeec-hHHhhhhHHHH------hhccccccCcHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence            11344443 22222221110      00112222333211   1111111  11121 2334477778888999999999


Q ss_pred             CCCCeEEEcCCCeeEEEEEEc
Q 048438          152 GDKRFEVVFPCHFAVVCFRVS  172 (239)
Q Consensus       152 ~~~g~~~~~~~~~~iv~f~~~  172 (239)
                      ++ |+++..+...--+...++
T Consensus       325 ~l-g~~v~~p~gayyl~adfs  344 (420)
T KOG0257|consen  325 EL-GLKVTGPEGAYYLWADFS  344 (420)
T ss_pred             hc-CCccccCCCceEEEEecc
Confidence            98 999887765443333443

>KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism]

Probab=96.52  E-value=0.029  Score=47.27  Aligned_cols=126  Identities=10%  Similarity=0.080  Sum_probs=69.9

Q ss_pred             CCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCC-cccceEEEeeCcc
Q 048438           15 TAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFA-TLDCCCLWATNPE   89 (239)
Q Consensus        15 t~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~-P~g~g~l~~~~~~   89 (239)
                      -+-|.+-|    +++..++|++|+++++.|..|.+-.-...-+....+.+ ..|.+.+.  |.|.+ -+..+.++..+ +
T Consensus       218 GEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk~la~d~env-~PDivilg--KalSGG~~Pvsavl~~~-~  293 (427)
T KOG1402|consen  218 GEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGKLLACDYENV-RPDIVILG--KALSGGVYPVSAVLADD-D  293 (427)
T ss_pred             cccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCcEEEeehhhc-CCCeEEEe--ccccCCeeeeEEEEecH-H
Confidence            35666665    78999999999999999999887543322111112333 37887764  55533 22233344433 2


Q ss_pred             cccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 048438           90 YLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK  154 (239)
Q Consensus        90 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~  154 (239)
                      ......+..       ..+..++.+..+.-..++|..+-+   ++..+++..|...|+++|.+++
T Consensus       294 im~~~~pge-------HgsTyggNpLg~~vaiAalevi~e---ekL~era~~lG~~l~~~L~~l~  348 (427)
T KOG1402|consen  294 IMLNIKPGE-------HGSTYGGNPLGCAVAIAALEVIVE---EKLVERAAKLGEILRDQLNKLQ  348 (427)
T ss_pred             HHhccCCCc-------cccccCCChHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcc
Confidence            222222111       011122333333333344554444   4566667799999999998863

>KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism]

Probab=96.33  E-value=0.051  Score=44.88  Aligned_cols=153  Identities=14%  Similarity=0.070  Sum_probs=82.5

Q ss_pred             EEEecCCCCccc-ccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEEee
Q 048438            8 LCATIGTTAITA-VDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWAT   86 (239)
Q Consensus         8 vv~t~gtt~~G~-i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~   86 (239)
                      |-.....|..|. ++++.    +-.-+|..++.|-+--.-.-++|     +.   ..+.+..+++|.. +|.|..++++|
T Consensus       152 vyyCaNETVHGVEf~~~P----~~~~~~~vlVaDmSSnflSrpvD-----vs---k~gvi~aGAQKN~-G~aG~Tvvivr  218 (370)
T KOG2790|consen  152 VYYCANETVHGVEFDFIP----VNDPKGAVLVADMSSNFLSRPVD-----VS---KFGVIFAGAQKNV-GPAGVTVVIVR  218 (370)
T ss_pred             EEEecCceeeceecCCCC----CCCCCCceEEEecccchhcCCcc-----ch---hcceEEecccccc-CccccEEEEEe
Confidence            444555677776 33333    11235777777876543333333     22   4788999999996 48898888887


Q ss_pred             CcccccccccCCCCccCCC----CceecCCCC-CChHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHhCCCCeEEE-
Q 048438           87 NPEYLKNKATESKPVVDYK----DWQITLSRS-FRSLKLWFVIRNYGM-ENLRHFLRSHVNMARLFERLVSGDKRFEVV-  159 (239)
Q Consensus        87 ~~~~l~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~l~~~g~-~g~~~~~~~~~~la~~l~~~l~~~~g~~~~-  159 (239)
                      + +.+.......+..+++.    .-++..+-+ |...-+-..++.+-. .|+++..+...+-++.+++.|.+..||-.. 
T Consensus       219 ~-dllg~~~~~tP~v~dyk~~~~NnSlyNTpP~f~iy~~~Lv~~~il~~GGl~a~e~~n~~KskllYd~iD~s~gfy~cp  297 (370)
T KOG2790|consen  219 K-DLLGNALDITPSVLDYKIMDKNNSLYNTPPCFGIYVMGLVFEWILEKGGLAAMEKLNQEKSKLLYDAIDNSNGFYRCP  297 (370)
T ss_pred             h-hhhcccccCCccccceeeeccccccccCCCeeeeeehhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCCeEEcc
Confidence            5 44443332222222221    011111111 222122223333321 255555556668889999999987787543 


Q ss_pred             cCC---CeeEEEEEEcCC
Q 048438          160 FPC---HFAVVCFRVSPL  174 (239)
Q Consensus       160 ~~~---~~~iv~f~~~~~  174 (239)
                      .++   .--.|+||+.+.
T Consensus       298 Ve~~~RS~MNV~Fri~~d  315 (370)
T KOG2790|consen  298 VEPSVRSRMNVPFRIEKD  315 (370)
T ss_pred             cchhhhhhcccceeecch
Confidence            122   123588999863

>KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism]

Probab=95.97  E-value=0.13  Score=43.79  Aligned_cols=56  Identities=20%  Similarity=0.244  Sum_probs=38.5

Q ss_pred             cccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCC-CCcceEEEcCccc
Q 048438           17 ITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGV-EGADSFSLNAHKW   73 (239)
Q Consensus        17 ~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~-~~~Ds~~~~~hK~   73 (239)
                      .+.-+=++.|.+||++||+.++||..|.++-....-|.+..-++ .-+|.++|| -|+
T Consensus       288 haSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~~PpD~vTFS-KK~  344 (484)
T KOG1405|consen  288 HASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLDSPPDVVTFS-KKF  344 (484)
T ss_pred             cCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCCCCCccceehh-hhh
Confidence            33345578999999999999999999988766554444322222 248888875 344

>KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism]

Probab=95.80  E-value=1.2  Score=39.08  Aligned_cols=204  Identities=10%  Similarity=0.129  Sum_probs=102.0

Q ss_pred             EEEEEecCCCCcccccCh---hHHHHHHHHhCCEEEEecccccccccC-------c--ccc--ccc-------CCCC-Cc
Q 048438            6 LFLCATIGTTAITAVDPL---KPLCDVAKQFGIWVHVDAAYAGSACIF-------P--EFR--HFI-------DGVE-GA   63 (239)
Q Consensus         6 ~~vv~t~gtt~~G~i~pl---~~i~~i~~~~gi~lhvD~A~~~~~~~~-------~--~~~--~~~-------~~~~-~~   63 (239)
                      ++-.+-.|.|.||...++   ++|.++||+|++.++-|--+..-....       +  .+.  .+.       -+++ .-
T Consensus       206 vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIVeDdpYy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdG  285 (472)
T KOG0634|consen  206 VLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIVEDDPYYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDG  285 (472)
T ss_pred             EEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEecCccceeeccccCCCccccCccccHHHHHHhhcCCcccccccc
Confidence            345566778999998776   679999999999999999886544431       0  000  000       0110 01


Q ss_pred             ceE-EEcCcccCCCc-ccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHH
Q 048438           64 DSF-SLNAHKWFFAT-LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVN  141 (239)
Q Consensus        64 Ds~-~~~~hK~l~~P-~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~  141 (239)
                      -++ .-++.|-+. | .-.|.+-. .+.++.+...       ..+...++...+...-+++.++..|++|+.+.+.+...
T Consensus       286 rVIr~dSFSKiia-PGlRlG~it~-~~~~l~ril~-------~ae~~t~~pSg~sq~iv~a~l~~wgqeG~~~wi~~l~~  356 (472)
T KOG0634|consen  286 RVIRNDSFSKIIA-PGLRLGWITG-NSLFLKRILD-------LAEVATSGPSGFSQGIVYAMLKRWGQEGFLRWIQHLRS  356 (472)
T ss_pred             cEEeccchhhhhc-CcceeEEeec-CHHHHHHHhh-------hcceeecCcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            112 225667543 3 22333322 2223333221       11112222122444556677888888887776654322


Q ss_pred             ----HHHHHHHHHhC-CCCe-EEEcCCCeeE-EEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEE
Q 048438          142 ----MARLFERLVSG-DKRF-EVVFPCHFAV-VCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAY  214 (239)
Q Consensus       142 ----la~~l~~~l~~-~~g~-~~~~~~~~~i-v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~  214 (239)
                          .+..+...|.+ +|.- -.+.+|..++ +.++++-...              ......++.-+.+...+.+.|..+
T Consensus       357 ~Yt~Rrn~~l~Al~kylp~~~~~~~~P~aGmFiwv~i~~~~~--------------~~~~~i~q~~e~i~~~~vk~gV~~  422 (472)
T KOG0634|consen  357 SYTERRNALLSALDKYLPKSVCEYHPPKAGMFIWVEIPYINF--------------DTKKSINQIEEIIFIKAVKNGVKL  422 (472)
T ss_pred             HHHHHHHHHHHHHHHhCCCCeeEEecCCcceEEEEEeccccc--------------ccccchHHHHHHHHHHHHHCCeEE
Confidence                23333344433 3332 3334565554 3444431110              111223444455666666777765


Q ss_pred             EEEEEE--C-----CEeEEEEEecC
Q 048438          215 MTNVVL--G-----GIYAIRFATGA  232 (239)
Q Consensus       215 ~~~~~~--~-----g~~~lR~~~~~  232 (239)
                      +-++..  .     ++.++|+++..
T Consensus       423 v~G~~F~v~p~~s~~kiffRls~a~  447 (472)
T KOG0634|consen  423 VCGSWFMVDPESSWSKIFFRLSIAF  447 (472)
T ss_pred             ecCceeEEcCccCCCcceEEEEeec
Confidence            554332  1     34599999653

>KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism]

Probab=95.22  E-value=1  Score=37.07  Aligned_cols=191  Identities=9%  Similarity=-0.042  Sum_probs=100.8

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHh-CCEEEEecccccccccCcccccccCCCCCcceE-EEcCcccCCCcccc-
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQF-GIWVHVDAAYAGSACIFPEFRHFIDGVEGADSF-SLNAHKWFFATLDC-   80 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~-gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~-~~~~hK~l~~P~g~-   80 (239)
                      .|-.+.+|.-.|.+|.+...+.|-++.+-- +..++||.|+--+.-... ...++...  -..+ .-.+.|.++ -.|. 
T Consensus       160 ~iK~~F~tSPgNPtg~~ik~~di~KiLe~p~nglVVvDEAYidFsg~~S-~~~lV~kY--pNLivlqTlSKsfG-LAGiR  235 (375)
T KOG0633|consen  160 KIKCIFLTSPGNPTGSIIKEDDILKILEMPDNGLVVVDEAYIDFSGVES-RMKLVKKY--PNLIVLQTLSKSFG-LAGIR  235 (375)
T ss_pred             cceEEEEcCCCCCCcccccHHHHHHHHhCCCCcEEEEeeeeEeeccccc-cchHhHhC--CceeehhhhhhhcC-cceeE
Confidence            456778888889999998888888887643 789999999742211000 01112211  2222 235566543 2121 


Q ss_pred             -eEEEeeC--cccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhC---HHHHHHHHHHHHHHHHHHHHHHhCCC
Q 048438           81 -CCLWATN--PEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYG---MENLRHFLRSHVNMARLFERLVSGDK  154 (239)
Q Consensus        81 -g~l~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g---~~g~~~~~~~~~~la~~l~~~l~~~~  154 (239)
                       |+-+...  ..++.....         +|.+.      .+.--.+|..+.   .+.++...+...+-..++...|.+++
T Consensus       236 vG~~~~~~~ia~iln~~Ka---------PYNiS------~~~s~~AL~Als~~n~kkme~~rdaiv~er~RL~keLt~v~  300 (375)
T KOG0633|consen  236 VGYGAFPLSIAEILNRAKA---------PYNIS------VAGSVAALAALSDSNGKKMEDVRDAIVRERERLFKELTEVP  300 (375)
T ss_pred             eecccccHHHHHHHHhccC---------Ccccc------chhHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHhhcCc
Confidence             1111100  122222110         11111      111122233332   23344444444455667778888887


Q ss_pred             CeE-EEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEE--ECCEeEEEEEec
Q 048438          155 RFE-VVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVV--LGGIYAIRFATG  231 (239)
Q Consensus       155 g~~-~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~--~~g~~~lR~~~~  231 (239)
                      ++. ..++...|.+..++.+.+                     |.....++.++..+..+++-+..  ..-+.++|++++
T Consensus       301 ~~~~~~gg~daNFiLi~v~~~~---------------------n~~akkly~q~at~~gVvVRfrgse~~c~G~lRitvG  359 (375)
T KOG0633|consen  301 FLNDYPGGSDANFILIEVTGGD---------------------NGMAKKLYKQDATKMGVVVRFRGSEEGCKGYLRITVG  359 (375)
T ss_pred             cccCCCCcccccEEEEEEcCCC---------------------cHHHHHHHHHHHHhcceEEEEcCCccccceeEEEEcC
Confidence            654 334567888888887643                     45556777777666555554322  223689999988


Q ss_pred             CCC
Q 048438          232 ATL  234 (239)
Q Consensus       232 ~~~  234 (239)
                      .+-
T Consensus       360 t~E  362 (375)
T KOG0633|consen  360 TPE  362 (375)
T ss_pred             Ccc
Confidence            653

>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase

Probab=94.56  E-value=0.094  Score=47.67  Aligned_cols=79  Identities=13%  Similarity=0.085  Sum_probs=51.5

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHh--CCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-c
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQF--GIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-L   78 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~--gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~   78 (239)
                      +-+|+++.-+|.||.+.+   +++|+++|++|  +++++.|.+++-..-   .+.........--.++.|+.|.++.| .
T Consensus       241 ~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~---~~~sl~~~~~~~vI~v~SfSK~fg~~G~  317 (521)
T TIGR03801       241 IKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVD---DFRSLFAELPYNTIGVYSFSKYFGATGW  317 (521)
T ss_pred             CcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcc---cccchhhhCCCCEEEEEcchhhccCchh
Confidence            445666677899999888   67778889987  999999999974321   11111111111235677999997644 3


Q ss_pred             cceEEEee
Q 048438           79 DCCCLWAT   86 (239)
Q Consensus        79 g~g~l~~~   86 (239)
                      =+|+++..
T Consensus       318 RlG~i~~~  325 (521)
T TIGR03801       318 RLGTIALH  325 (521)
T ss_pred             hhhhhhcC
Confidence            36666653

This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).

>PRK09275 aspartate aminotransferase; Provisional

Probab=93.64  E-value=0.16  Score=46.26  Aligned_cols=79  Identities=14%  Similarity=0.120  Sum_probs=51.1

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHH--hCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-c
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQ--FGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-L   78 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~--~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~   78 (239)
                      +-+|+++.-+|.||.+.+   +++|+++|++  +++|++.|.+|+-..-   .+......+..--.++.|+.|.++.| .
T Consensus       242 tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~---~~~s~~~~~~~~~I~v~SfSK~f~mtG~  318 (527)
T PRK09275        242 IKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVD---DFRSLFAVLPYNTILVYSFSKYFGATGW  318 (527)
T ss_pred             CCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhcc---cccCHHHhCCCCEEEEeehhhhccCcHh
Confidence            456777788999999888   7778888865  4999999999875321   11111111111235677899997654 2


Q ss_pred             cceEEEee
Q 048438           79 DCCCLWAT   86 (239)
Q Consensus        79 g~g~l~~~   86 (239)
                      =.|++...
T Consensus       319 RlG~i~~~  326 (527)
T PRK09275        319 RLGVIALH  326 (527)
T ss_pred             HHhhhhcC
Confidence            25666543

>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=91.87  E-value=2  Score=37.21  Aligned_cols=159  Identities=14%  Similarity=0.134  Sum_probs=77.4

Q ss_pred             EEEecCCCCccc---ccChhHHHHHHHHhCCEEEEecccccccccCcc--c--ccccCCCCCcceEEEcCcccCCCccc-
Q 048438            8 LCATIGTTAITA---VDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPE--F--RHFIDGVEGADSFSLNAHKWFFATLD-   79 (239)
Q Consensus         8 vv~t~gtt~~G~---i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~--~--~~~~~~~~~~Ds~~~~~hK~l~~P~g-   79 (239)
                      +.=.++.|.||.   .+...+|.++.++.|..-++|-|+=+..--+++  +  |.+..... -=+++.|+.|.++ -+| 
T Consensus       176 LLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~GleeDa~~lR~~a~~~~-~~lva~S~SKnfg-LYgE  253 (396)
T COG1448         176 LLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADGLEEDAYALRLFAEVGP-ELLVASSFSKNFG-LYGE  253 (396)
T ss_pred             EEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhhccchHHHHHHHHHHHHhCC-cEEEEehhhhhhh-hhhh
Confidence            333444688887   445788999999999999999995443222221  1  11222211 2467889999964 443 


Q ss_pred             -ceEEEe--eCcccccccccCCCCccCCCCceecCCCCCChHHHHH---HHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC
Q 048438           80 -CCCLWA--TNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWF---VIRNYGMENLRHFLRSHVNMARLFERLVSGD  153 (239)
Q Consensus        80 -~g~l~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~  153 (239)
                       .|.+.+  .+.+......+.-.... -..|+-+..--...++...   .|+..-...+..+..+..++++.|.+.|++.
T Consensus       254 RVGa~~vva~~~~~a~~v~sqlk~~i-R~~ySnPP~~Ga~vva~IL~~p~Lra~W~~El~~Mr~Ri~~mR~~lv~~L~~~  332 (396)
T COG1448         254 RVGALSVVAEDAEEADRVLSQLKAII-RTNYSNPPAHGAAVVATILNNPELRAEWEQELEEMRQRILEMRQALVDALKAL  332 (396)
T ss_pred             ccceeEEEeCCHHHHHHHHHHHHHHH-HhccCCCchhhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence             344433  22111111100000000 0001111000001111111   2333323445556666779999999999873


Q ss_pred             -C--CeEEEcCCCeeEEEEE
Q 048438          154 -K--RFEVVFPCHFAVVCFR  170 (239)
Q Consensus       154 -~--g~~~~~~~~~~iv~f~  170 (239)
                       +  .|..+ ..+.+|.+|.
T Consensus       333 ~~~~~f~~i-~~Q~GMFsy~  351 (396)
T COG1448         333 GAPRNFDFI-ISQRGMFSYT  351 (396)
T ss_pred             CCCcccchH-hhcCceeecC
Confidence             1  24443 3456675555

>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria []

Probab=91.10  E-value=8.7  Score=33.34  Aligned_cols=70  Identities=14%  Similarity=0.089  Sum_probs=44.3

Q ss_pred             cccChhHHHHHHHHh--CCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-ccceEEEeeCccccccc
Q 048438           19 AVDPLKPLCDVAKQF--GIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-LDCCCLWATNPEYLKNK   94 (239)
Q Consensus        19 ~i~pl~~i~~i~~~~--gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~g~l~~~~~~~l~~~   94 (239)
                      .++.|+++.+..|+.  ++++.||-|+|=+.-..   .+..-   +||.+..|+=|..++- ..+|..++.+.+++...
T Consensus       173 ~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE~~---EP~~v---GADl~aGSLIKNpGGgiAptGGYIaGr~~lVe~~  245 (403)
T PF06838_consen  173 TIEEIKEIIKFVKEINPDVIIFVDNCYGEFVETQ---EPTEV---GADLMAGSLIKNPGGGIAPTGGYIAGRKDLVERA  245 (403)
T ss_dssp             -HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTSSS----GGGG---T-SEEEEETTSGGGTTT-SS-EEEEESHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhCCCeEEEEeCCcceecccc---Ccccc---chhheeccceeCCCCCccCcCCEEechHHHHHHH
Confidence            367788888888875  78999999997442211   11111   4999999999997652 33566677666665543

; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.

>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=89.66  E-value=14  Score=32.52  Aligned_cols=79  Identities=16%  Similarity=0.037  Sum_probs=50.4

Q ss_pred             EEEEEecCCCCcccc--cC--hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccce
Q 048438            6 LFLCATIGTTAITAV--DP--LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCC   81 (239)
Q Consensus         6 ~~vv~t~gtt~~G~i--~p--l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g   81 (239)
                      .+|++--+.-.-|.+  +|  +..|.++|+++|+.++.|..+.+..-....+....-++ ..|..++  -|.|++-...|
T Consensus       208 aAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~~~a~e~~~~-~PDI~t~--aK~L~gGlPig  284 (433)
T KOG1401|consen  208 AAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGYGWAQEYFGV-TPDITTV--AKPLGGGLPIG  284 (433)
T ss_pred             EEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccchHHHHHHhCc-CCcceee--hhhccCCceeE
Confidence            345555555444443  33  67899999999999999999886433333332222233 3787765  57777666677


Q ss_pred             EEEeeC
Q 048438           82 CLWATN   87 (239)
Q Consensus        82 ~l~~~~   87 (239)
                      +..+++
T Consensus       285 A~~v~~  290 (433)
T KOG1401|consen  285 ATGVRD  290 (433)
T ss_pred             EEeehH
Confidence            788764

>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)

Probab=87.12  E-value=1.2  Score=35.03  Aligned_cols=36  Identities=11%  Similarity=0.056  Sum_probs=32.1

Q ss_pred             EEEEEecCCCCcccccChhHHHHHHHHhCCEEEEec
Q 048438            6 LFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDA   41 (239)
Q Consensus         6 ~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~   41 (239)
                      ++|+.|-|++..|.++|++.-+++++++|+.+|.=|
T Consensus       114 vvILLTDG~n~~~~i~P~~aAa~lA~~~gV~iytIg  149 (191)
T cd01455         114 IVIVLSDANLERYGIQPKKLADALAREPNVNAFVIF  149 (191)
T ss_pred             EEEEEeCCCcCCCCCChHHHHHHHHHhCCCEEEEEE
Confidence            788999999999999999888899999999987655

Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	239
3rbf_A	480	Crystal Structure Of Human Aromatic L-Amino Acid De		3e-47
3rch_A	480	Crystal Structure Of Human Aromatic L-Amino Acid De		1e-46
1js3_A	486	Crystal Structure Of Dopa Decarboxylase In Complex		4e-46
3k40_A	475	Crystal Structure Of Drosophila 3,4-Dihydroxyphenyl		6e-44
4e1o_A	481	Human Histidine Decarboxylase Complex With Histidin		2e-41
2jis_A	515	Human Cysteine Sulfinic Acid Decarboxylase (Csad) I		5e-22
2qma_A	497	Crystal Structure Of Glutamate Decarboxylase Domain		2e-15
3vp6_A	511	Structural Characterization Of Glutamic Acid Decarb		5e-15
2okj_A	504	The X-Ray Crystal Structure Of The 67kda Isoform Of		1e-14
2okk_A	497	The X-Ray Crystal Structure Of The 65kda Isoform Of		1e-14
3f9t_A	397	Crystal Structure Of L-tyrosine Decarboxylase Mfna		4e-05

>pdb|3RBF|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid Decarboxylase (Aadc) In The Apo Form Length = 480

Iteration: 1
 Score =  184 bits (468), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 97/250 (38%), Positives = 134/250 (53%), Gaps = 33/250 (13%)
Query: 1   AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGV 60
           AGLIP F+ AT+GTT   + D L  +  +  +  IW+HVDAAYAGSA I PEFRH ++GV
Sbjct: 232 AGLIPFFMVATLGTTTCCSFDNLLEVGPICNKEDIWLHVDAAYAGSAFICPEFRHLLNGV 291
Query: 61  EGADSFSLNAHKWFFATLDCCCLWAT-----------NPEYLKNKATESKPVVDYKDWQI 109
           E ADSF+ N HKW     DC  +W             +P YLK+   +S  + DY+ WQI
Sbjct: 292 EFADSFNFNPHKWLLVNFDCSAMWVKKRTDLTGAFRLDPTYLKHSHQDSGLITDYRHWQI 351
Query: 110 TLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCF 169
            L R FRSLK+WFV R YG++ L+ ++R HV ++  FE LV  D RFE+       +VCF
Sbjct: 352 PLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFESLVRQDPRFEICVEVILGLVCF 411
Query: 170 RVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFA 229
           R+                      +  N+ N  LL+ IN++ K ++    L   + +RFA
Sbjct: 412 RL----------------------KGSNKVNEALLQRINSAKKIHLVPCHLRDKFVLRFA 449
Query: 230 TGATLTEERH 239
             +   E  H
Sbjct: 450 ICSRTVESAH 459

>pdb|3RCH|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid Decarboxylase (Aadc) In The Open Conformation With Llp And Plp Bound To Chain-A And Chain- B Respectively Length = 480

Iteration: 1
 Score =  182 bits (462), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 96/250 (38%), Positives = 133/250 (53%), Gaps = 33/250 (13%)
Query: 1   AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGV 60
           AGLIP F+ AT+GTT   + D L  +  +  +  IW+HVDAAYAGSA I PEFRH ++GV
Sbjct: 232 AGLIPFFMVATLGTTTCCSFDNLLEVGPICNKEDIWLHVDAAYAGSAFICPEFRHLLNGV 291
Query: 61  EGADSFSLNAHKWFFATLDCCCLWAT-----------NPEYLKNKATESKPVVDYKDWQI 109
           E ADSF+ N H W     DC  +W             +P YLK+   +S  + DY+ WQI
Sbjct: 292 EFADSFNFNPHXWLLVNFDCSAMWVKKRTDLTGAFRLDPTYLKHSHQDSGLITDYRHWQI 351
Query: 110 TLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCF 169
            L R FRSLK+WFV R YG++ L+ ++R HV ++  FE LV  D RFE+       +VCF
Sbjct: 352 PLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFESLVRQDPRFEICVEVILGLVCF 411
Query: 170 RVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFA 229
           R+                      +  N+ N  LL+ IN++ K ++    L   + +RFA
Sbjct: 412 RL----------------------KGSNKVNEALLQRINSAKKIHLVPCHLRDKFVLRFA 449
Query: 230 TGATLTEERH 239
             +   E  H
Sbjct: 450 ICSRTVESAH 459

>pdb|1JS3|A Chain A, Crystal Structure Of Dopa Decarboxylase In Complex With The Inhibitor Carbidopa Length = 486

Iteration: 1
 Score =  181 bits (458), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 97/250 (38%), Positives = 133/250 (53%), Gaps = 33/250 (13%)
Query: 1   AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGV 60
           AGLIP F+ AT+GTT+  + D L  +  +  +  IW+HVDAAYAGSA I PEFRH ++GV
Sbjct: 232 AGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGV 291
Query: 61  EGADSFSLNAHKWFFATLDCCCLWAT-----------NPEYLKNKATESKPVVDYKDWQI 109
           E ADSF+ N HKW     DC  +W             +P YLK+    S  + DY+ WQ+
Sbjct: 292 EFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQL 351
Query: 110 TLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCF 169
            L R FRSLK+WFV R YG++ L+ ++R HV ++  FE  V  D RFEV       +VCF
Sbjct: 352 PLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCF 411
Query: 170 RVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFA 229
           R+                      +  +  N  LLE IN++ K ++    L G + +RFA
Sbjct: 412 RL----------------------KGSDGLNEALLERINSARKIHLVPCRLRGQFVLRFA 449
Query: 230 TGATLTEERH 239
             +   E  H
Sbjct: 450 ICSRKVESGH 459

>pdb|3K40|A Chain A, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine Decarboxylase Length = 475

Iteration: 1
 Score =  173 bits (439), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 93/246 (37%), Positives = 125/246 (50%), Gaps = 35/246 (14%)
Query: 2   GLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVE 61
           GLIP +   T+GTT   A D L     V  +  +W+HVDAAYAGSA I PE+RH + G+E
Sbjct: 232 GLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIE 291
Query: 62  GADSFSLNAHKWFFATLDCCCLWATNPE-----------YLKNKATESKPVVDYKDWQIT 110
            ADSF+ N H W     DC  +W  +P            YLK+    S P  DY+ WQI 
Sbjct: 292 SADSFNFNPHXWMLVNFDCSAMWLKDPSWVVNAFNVDPLYLKHDMQGSAP--DYRHWQIP 349
Query: 111 LSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCFR 170
           L R FR+LKLWFV+R YG+ENL+  +R H N A+ F  L   D RFE+    +  +VCFR
Sbjct: 350 LGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINMGLVCFR 409
Query: 171 VSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFAT 230
           +                      +  NE N  LL+ IN  G  ++    +  +Y +R A 
Sbjct: 410 L----------------------KGSNERNEALLKRINGRGHIHLVPAKIKDVYFLRMAI 447
Query: 231 GATLTE 236
            +  T+
Sbjct: 448 CSRFTQ 453

>pdb|4E1O|A Chain A, Human Histidine Decarboxylase Complex With Histidine Methyl Ester (Hme) Length = 481

Iteration: 1
 Score =  165 bits (418), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 88/245 (35%), Positives = 127/245 (51%), Gaps = 35/245 (14%)
Query: 2   GLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVE 61
           GL+P+F+CAT+GTT + A D L  L  +  + G+W+H+DAAYAG+A + PEFR F+ G+E
Sbjct: 239 GLVPVFVCATLGTTGVCAFDXLSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIE 298
Query: 62  GADSFSLNAHKWFFATLDCCCLW-----------ATNPEYLKNKATESKPVVDYKDWQIT 110
            ADSF+ N  KW     DC   W           + NP YL++    S    D+  WQI 
Sbjct: 299 YADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRH--ANSGVATDFMHWQIP 356
Query: 111 LSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCFR 170
           LSR FRS+KLWFVIR++G++NL+  +R    MA+ FE LV  D  FE+    H  +V FR
Sbjct: 357 LSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKRHLGLVVFR 416
Query: 171 VSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFAT 230
           +                      +  N     +L+ I  +G+ ++    +     IRF  
Sbjct: 417 L----------------------KGPNSLTENVLKEIAKAGRLFLIPATIQDKLIIRFTV 454
Query: 231 GATLT 235
            +  T
Sbjct: 455 TSQFT 459

>pdb|2JIS|A Chain A, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In Complex With Plp. Length = 515

Iteration: 1
 Score =  100 bits (250), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 90/194 (46%), Gaps = 13/194 (6%)
Query: 2   GLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVE 61
           G +P  + AT GTT + A DPL+ + DV ++ G+W+HVDAA+ GS  +    RH +DG++
Sbjct: 257 GAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLDGIQ 316
Query: 62  GADSFSLNAHKWFFATLDCCCLWATNPEYLKNKATESKP------------VVDYKDWQI 109
            ADS + N HK   A L C  L   +   L  +   S+              +D  D  +
Sbjct: 317 RADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVV 376
Query: 110 TLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCF 169
              R    LKLW + +  G + L   +     +AR     +   + FE+V    F  VCF
Sbjct: 377 QCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFVNVCF 436
Query: 170 RVSPLPVLMDKLKT 183
              P P L  K ++
Sbjct: 437 WFVP-PSLRGKQES 449

>pdb|2QMA|A Chain A, Crystal Structure Of Glutamate Decarboxylase Domain Of Diaminobutyrate-Pyruvate Transaminase And L-2,4-Diaminobutyrate Decarboxylase From Vibrio Parahaemolyticus Length = 497

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 101/241 (41%), Gaps = 40/241 (16%)
Query: 2   GLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVE 61
           GLIP  +  T GTT   A+D L  + D A +   W HVD AY G A I    +  + GVE
Sbjct: 256 GLIPFAIVGTAGTTDHGAIDDLDFIADXAVKHDXWXHVDGAYGG-ALILSSHKSRLKGVE 314
Query: 62  GADSFSLNAHKWFFATLDCCCLWATN----------PEYLKNKATESKPVVDYKDWQITL 111
            A S S++ HK F+ T+ C  L   +           +YL  +  E   +VD     I  
Sbjct: 315 RAHSISVDFHKLFYQTISCGALLVNDKSNFKFLLHHADYLNREHDELPNLVDK---SIAT 371
Query: 112 SRSFRSLKLWFVIRNYGMENL----RHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVV 167
           ++ F +LK++   +N G + L     H L   + +A      +  + +FE++     + V
Sbjct: 372 TKRFDALKVFXTXQNVGPKALGDXYDHLLAQTLEVA----DXIRTNDQFELLAEPSLSTV 427
Query: 168 CFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIR 227
            FR +                   E   ++E N+ L       G A +   ++ G  A++
Sbjct: 428 LFRAT------------------HETADLDELNKALRLEALTRGIAVLGETIVDGKTALK 469
Query: 228 F 228
           F
Sbjct: 470 F 470

>pdb|3VP6|A Chain A, Structural Characterization Of Glutamic Acid Decarboxylase; Insights Into The Mechanism Of Autoinactivation Length = 511

Iteration: 1
 Score = 77.8 bits (190), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 80/186 (43%), Gaps = 15/186 (8%)
Query: 2   GLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVE 61
           G +P ++ AT GTT   A DP++ + D+ +++ +W+HVDAA+ G   +  + RH ++G+E
Sbjct: 246 GYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIE 305
Query: 62  GADSFSLNAHKWFFATLDCCCLWAT-----------NPEYLKNKATESKPVVDYKDWQIT 110
            A+S + N H      L C  +              +  YL  +        D  D  I 
Sbjct: 306 RANSVTWNPHXMMGVLLQCSAILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTGDKAIQ 365
Query: 111 LSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF---PCHFAVV 167
             R     K W + +  G     + +   + +A      +   + FE+VF   P H   V
Sbjct: 366 CGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEH-TNV 424
Query: 168 CFRVSP 173
           CF   P
Sbjct: 425 CFWYIP 430

>pdb|2OKJ|A Chain A, The X-Ray Crystal Structure Of The 67kda Isoform Of Glutamic Acid Decarboxylase (Gad67) Length = 504

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 79/186 (42%), Gaps = 15/186 (8%)
Query: 2   GLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVE 61
           G +P ++ AT GTT   A DP++ + D+ +++ +W+HVDAA+ G   +  + RH ++G+E
Sbjct: 243 GYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIE 302
Query: 62  GADSFSLNAHKWFFATLDCCCLWATNP-----------EYLKNKATESKPVVDYKDWQIT 110
            A+S + N H      L C  +                 YL     +     D  D  I 
Sbjct: 303 RANSVTWNPHXMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQ 362
Query: 111 LSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF---PCHFAVV 167
             R     K W + +  G     + +   + +A      +   + FE+VF   P H   V
Sbjct: 363 CGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEH-TNV 421
Query: 168 CFRVSP 173
           CF   P
Sbjct: 422 CFWYIP 427

>pdb|2OKK|A Chain A, The X-Ray Crystal Structure Of The 65kda Isoform Of Glutamic Acid Decarboxylase (Gad65) Length = 497

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 77/186 (41%), Gaps = 14/186 (7%)
Query: 2   GLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVE 61
           G +P  + AT GTT   A DPL  + D+ K++ IW+HVDAA+ G   +  + +  + GVE
Sbjct: 239 GFVPFLVSATAGTTVYGAFDPLLAVADICKKYKIWMHVDAAWGGGLLMSRKHKWKLSGVE 298
Query: 62  GADSFSLNAHKWFFATLDCCCLWA-----------TNPEYLKNKATESKPVVDYKDWQIT 110
            A+S + N H      L C  L              +  YL  +        D  D  + 
Sbjct: 299 RANSVTWNPHXMMGVPLQCSALLVREEGLMQNCNQMHASYLFQQDKHYDLSYDTGDKALQ 358
Query: 111 LSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF---PCHFAVV 167
             R     KLW + R  G       +   + +A     ++   + +E+VF   P H  V 
Sbjct: 359 CGRHVDVFKLWLMWRAKGTTGFEAHVDKCLELAEYLYNIIKNREGYEMVFDGKPQHTNVC 418
Query: 168 CFRVSP 173
            + + P
Sbjct: 419 FWYIPP 424

>pdb|3F9T|A Chain A, Crystal Structure Of L-tyrosine Decarboxylase Mfna (ec 4.1.1.25) (np_247014.1) From Methanococcus Jannaschii At 2.11 A Resolution Length = 397

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 8   LCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVE------ 61
           +    GTT +  +D ++ L  +AK+  I++HVDAA+ G    F + ++   GV       
Sbjct: 175 IIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFS 234
Query: 62  -GADSFSLNAHK 72
            G DS +++ HK
Sbjct: 235 LGVDSITIDPHK 246

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	239
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	1e-102
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	1e-101
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	1e-101
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	1e-99
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	9e-99
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	3e-97
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	9e-25
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	1e-24
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	4e-23
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	2e-22
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	3e-19
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	1e-14
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	6e-07
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	8e-07

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* Length = 486

 Score =  304 bits (781), Expect = e-102
 Identities = 97/250 (38%), Positives = 132/250 (52%), Gaps = 33/250 (13%)

Query: 1   AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGV 60
           AGLIP F+ AT+GTT+  + D L  +  +  +  IW+HVDAAYAGSA I PEFRH ++GV
Sbjct: 232 AGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGV 291

Query: 61  EGADSFSLNAHKWFFATLDCCCLW-----------ATNPEYLKNKATESKPVVDYKDWQI 109
           E ADSF+ N HKW     DC  +W             +P YLK+    S  + DY+ WQ+
Sbjct: 292 EFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQL 351

Query: 110 TLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCF 169
            L R FRSLK+WFV R YG++ L+ ++R HV ++  FE  V  D RFEV       +VCF
Sbjct: 352 PLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCF 411

Query: 170 RVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFA 229
           R+                         +  N  LLE IN++ K ++    L G + +RFA
Sbjct: 412 RLKG----------------------SDGLNEALLERINSARKIHLVPCRLRGQFVLRFA 449

Query: 230 TGATLTEERH 239
             +   E  H
Sbjct: 450 ICSRKVESGH 459

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} Length = 475

 Score =  301 bits (772), Expect = e-101
 Identities = 93/250 (37%), Positives = 124/250 (49%), Gaps = 35/250 (14%)

Query: 1   AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGV 60
            GLIP +   T+GTT   A D L     V  +  +W+HVDAAYAGSA I PE+RH + G+
Sbjct: 231 EGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGI 290

Query: 61  EGADSFSLNAHKWFFATLDCCCLW-----------ATNPEYLKNKATESKPVVDYKDWQI 109
           E ADSF+ N HKW     DC  +W             +P YLK+    S    DY+ WQI
Sbjct: 291 ESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLYLKHDMQGS--APDYRHWQI 348

Query: 110 TLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCF 169
            L R FR+LKLWFV+R YG+ENL+  +R H N A+ F  L   D RFE+    +  +VCF
Sbjct: 349 PLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINMGLVCF 408

Query: 170 RVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFA 229
           R+                         NE N  LL+ IN  G  ++    +  +Y +R A
Sbjct: 409 RLKGS----------------------NERNEALLKRINGRGHIHLVPAKIKDVYFLRMA 446

Query: 230 TGATLTEERH 239
             +  T+   
Sbjct: 447 ICSRFTQSED 456

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} Length = 481

 Score =  300 bits (770), Expect = e-101
 Identities = 88/250 (35%), Positives = 126/250 (50%), Gaps = 35/250 (14%)

Query: 1   AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGV 60
            GL+P+F+CAT+GTT + A D L  L  +  + G+W+H+DAAYAG+A + PEFR F+ G+
Sbjct: 238 RGLVPVFVCATLGTTGVCAFDCLSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGI 297

Query: 61  EGADSFSLNAHKWFFATLDCCCLW-----------ATNPEYLKNKATESKPVVDYKDWQI 109
           E ADSF+ N  KW     DC   W           + NP YL++    S    D+  WQI
Sbjct: 298 EYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRHA--NSGVATDFMHWQI 355

Query: 110 TLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCF 169
            LSR FRS+KLWFVIR++G++NL+  +R    MA+ FE LV  D  FE+    H  +V F
Sbjct: 356 PLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKRHLGLVVF 415

Query: 170 RVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFA 229
           R+                         N     +L+ I  +G+ ++    +     IRF 
Sbjct: 416 RLKGP----------------------NSLTENVLKEIAKAGRLFLIPATIQDKLIIRFT 453

Query: 230 TGATLTEERH 239
             +  T    
Sbjct: 454 VTSQFTTRDD 463

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} Length = 515

 Score =  298 bits (765), Expect = 1e-99
 Identities = 64/252 (25%), Positives = 100/252 (39%), Gaps = 20/252 (7%)

Query: 1   AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGV 60
            G +P  + AT GTT + A DPL+ + DV ++ G+W+HVDAA+ GS  +    RH +DG+
Sbjct: 256 EGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLDGI 315

Query: 61  EGADSFSLNAHKWFFATLDCCCLW------------ATNPEYLKNKATESKPVVDYKDWQ 108
           + ADS + N HK   A L C  L              +   YL  +       +D  D  
Sbjct: 316 QRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKV 375

Query: 109 ITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVC 168
           +   R    LKLW + +  G + L   +     +AR     +   + FE+V    F  VC
Sbjct: 376 VQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFVNVC 435

Query: 169 FRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGG-IYAIR 227
           F   P  +   +    Y        E++++    L E +   G   +     G      R
Sbjct: 436 FWFVPPSLRGKQESPDY-------HERLSKVAPVLKERMVKEGSMMIGYQPHGTRGNFFR 488

Query: 228 FATGATLTEERH 239
                +      
Sbjct: 489 VVVANSALTCAD 500

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* Length = 504

 Score =  295 bits (758), Expect = 9e-99
 Identities = 51/253 (20%), Positives = 93/253 (36%), Gaps = 21/253 (8%)

Query: 1   AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGV 60
            G +P ++ AT GTT   A DP++ + D+ +++ +W+HVDAA+ G   +  + RH ++G+
Sbjct: 242 KGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGI 301

Query: 61  EGADSFSLNAHKWFFATLDCCCLW-----------ATNPEYLKNKATESKPVVDYKDWQI 109
           E A+S + N HK     L C  +                 YL     +     D  D  I
Sbjct: 302 ERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAI 361

Query: 110 TLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF--PCHFAVV 167
              R     K W + +  G     + +   + +A      +   + FE+VF        V
Sbjct: 362 QCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNV 421

Query: 168 CFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTN-VVLGGIYAI 226
           CF   P  +       +         E++++   ++   +  SG   +            
Sbjct: 422 CFWYIPQSL-------RGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFF 474

Query: 227 RFATGATLTEERH 239
           R         +  
Sbjct: 475 RMVISNPAATQSD 487

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} Length = 497

 Score =  291 bits (748), Expect = 3e-97
 Identities = 59/249 (23%), Positives = 102/249 (40%), Gaps = 32/249 (12%)

Query: 1   AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGV 60
            GLIP  +  T GTT   A+D L  + D+A +  +W+HVD AY G A I    +  + GV
Sbjct: 255 EGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAYGG-ALILSSHKSRLKGV 313

Query: 61  EGADSFSLNAHKWFFATLDCCCLW----------ATNPEYLKNKATESKPVVDYKDWQIT 110
           E A S S++ HK F+ T+ C  L             + +YL  +  E   + +  D  I 
Sbjct: 314 ERAHSISVDFHKLFYQTISCGALLVNDKSNFKFLLHHADYLNREHDE---LPNLVDKSIA 370

Query: 111 LSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCFR 170
            ++ F +LK++  ++N G + L       +        ++  + +FE++     + V FR
Sbjct: 371 TTKRFDALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTNDQFELLAEPSLSTVLFR 430

Query: 171 VSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFAT 230
            +                   E   ++E N+ L       G A +   ++ G  A++F  
Sbjct: 431 ATH------------------ETADLDELNKALRLEALTRGIAVLGETIVDGKTALKFTI 472

Query: 231 GATLTEERH 239
                    
Sbjct: 473 LNPCLTTSD 481

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} Length = 497

 Score =  100 bits (251), Expect = 9e-25
 Identities = 33/192 (17%), Positives = 64/192 (33%), Gaps = 12/192 (6%)

Query: 5   PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIF------PEFRHFID 58
            + L  +         D ++ L  +A+++ + +HVD+        F              
Sbjct: 207 TVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDF 266

Query: 59  GVEGADSFSLNAHKWFFATLDCCCLWATNPEYLKNKATESKPVVDYKDWQITL--SRS-F 115
            V G  S S + HK+ FA      +   N +   ++   +           TL  SR   
Sbjct: 267 RVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYVNPAWTGGLYGSPTLAGSRPGA 326

Query: 116 RSLKLWFVIRNYGMENLRHFLRSHVNMAR-LFERLVSGDKRFEVVFPCHFAVVCFRVSPL 174
             +  W  + N G        +  V  A    + +       +++    ++V+ F    L
Sbjct: 327 IVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNPRYSVISFSSKTL 386

Query: 175 PV--LMDKLKTK 184
            +  L D+L  K
Sbjct: 387 NIHELSDRLSKK 398

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 Length = 456

 Score =  100 bits (250), Expect = 1e-24
 Identities = 19/153 (12%), Positives = 55/153 (35%), Gaps = 16/153 (10%)

Query: 1   AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGV 60
            G  P  + +T+        D +  +  + + + I   ++ AY   A     +   +   
Sbjct: 229 LGNRPC-VLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAY---AIQNNYYLEKLKKA 284

Query: 61  --EGADSFSLNAHKWFFATLDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSL 118
                D+   ++ K     +    +++T+ E++K  +           +    S +   +
Sbjct: 285 FKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISL---------SYPGRASAT-PVV 334

Query: 119 KLWFVIRNYGMENLRHFLRSHVNMARLFERLVS 151
                + + G +N    +++  N  +L + L++
Sbjct: 335 NTLVSLLSMGSKNYLELVKNQKNSKKLLDELLN 367

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* Length = 514

 Score = 96.1 bits (239), Expect = 4e-23
 Identities = 34/190 (17%), Positives = 65/190 (34%), Gaps = 11/190 (5%)

Query: 5   PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPE-----FRHFIDG 59
            + +  +        VDP+  +  +A + GI  HVDA   G    + E        F   
Sbjct: 240 TVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFR 299

Query: 60  VEGADSFSLNAHKWFFATLDCCCLWATNPEYLKNKATESKPVVDYKDWQITL--SRS-FR 116
           +EG  S S + HK+ +       +    P+ L  +   +        +  T   SR    
Sbjct: 300 LEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGAL 359

Query: 117 SLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCFRVSPLPV 176
           S   W  + + G E      R  +  A   +  V      +++      V+      L +
Sbjct: 360 SATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKILGD-PLWVIAVASDELNI 418

Query: 177 --LMDKLKTK 184
             +M+++  +
Sbjct: 419 YQVMEEMAGR 428

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} Length = 397

 Score = 93.2 bits (232), Expect = 2e-22
 Identities = 37/189 (19%), Positives = 75/189 (39%), Gaps = 11/189 (5%)

Query: 5   PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVE--- 61
              +    GTT +  +D ++ L  +AK+  I++HVDAA+ G    F + ++   GV    
Sbjct: 172 VDGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKF 231

Query: 62  ----GADSFSLNAHKWFFATLDC-CCLWATNPEYLKNKATESKPVVDYKDWQITLSRS-F 115
               G DS +++ HK     +     L+  +  Y +    ++  + + +   I  +R  F
Sbjct: 232 DFSLGVDSITIDPHKMGHCPIPSGGILFK-DIGYKRYLDVDAPYLTETRQATILGTRVGF 290

Query: 116 RSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCFRVSPLP 175
                + V+R  G E  R  +   +       + +  +    V+ P    +V        
Sbjct: 291 GGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKENNFKPVIEP-ILNIVAIEDEDYK 349

Query: 176 VLMDKLKTK 184
            +  KL+ +
Sbjct: 350 EVCKKLRDR 358

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} Length = 502

 Score = 85.1 bits (210), Expect = 3e-19
 Identities = 33/196 (16%), Positives = 67/196 (34%), Gaps = 16/196 (8%)

Query: 5   PLFLCATIGTTAITAVDPLKPLCDVAKQFG------IWVHVDAAYAGSACIFPEFRHFID 58
            + + A +G+T     + +K L D+  +          +HVDAA  G    F       D
Sbjct: 203 TICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWD 262

Query: 59  -GVEGADSFSLNAHKWFFATLDCCCLWATNPEYLKNKATESKPVVDYKDWQITL--SRS- 114
             +    S +++ HK+         +   N E L  +       +       TL  S+  
Sbjct: 263 FRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGS 322

Query: 115 FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF-PCHFAVVCFRVSP 173
            + +  ++ +   G E  R+ + +      +    +   +RF +V       +V F +  
Sbjct: 323 SQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVSKDEGVPLVAFSLKD 382

Query: 174 -----LPVLMDKLKTK 184
                   + D L+  
Sbjct: 383 SSCHTEFEISDMLRRY 398

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* Length = 452

 Score = 71.9 bits (176), Expect = 1e-14
 Identities = 36/201 (17%), Positives = 69/201 (34%), Gaps = 21/201 (10%)

Query: 5   PLFLCATIGTTAITAVDPLKPLCDVAKQF------GIWVHVDAAYAGSACIFPEFRHFID 58
            + +  T G T     +  +PL D   +F       I +H+DAA  G    F       D
Sbjct: 188 TIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWD 247

Query: 59  -GVEGADSFSLNAHKWFFATLDCCCLWATNPEYLKNKATESKPVVDYKDWQITL--SRS- 114
             +    S S + HK+  A L C  +   + E L  +   +   +  +     +  SR  
Sbjct: 248 FRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPA 307

Query: 115 FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFA----VVCFR 170
            + +  ++     G E       +   +A      ++    +E +           VCF+
Sbjct: 308 GQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFK 367

Query: 171 VSP-------LPVLMDKLKTK 184
           +         L  L ++L+ +
Sbjct: 368 LKDGEDPGYTLYDLSERLRLR 388

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} Length = 501

 Score = 48.6 bits (115), Expect = 6e-07
 Identities = 24/146 (16%), Positives = 46/146 (31%), Gaps = 10/146 (6%)

Query: 6   LFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADS 65
           L + +T    A    D L+ L  +   + I   V+ AY   +            V   D+
Sbjct: 218 LCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDA 277

Query: 66  FSLNAHKWFFATLDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIR 125
           F  +  K F   +    +   N  +++  +         K +    S S  SL +   + 
Sbjct: 278 FVQSLDKNFMVPVGGAIIAGFNDSFIQEIS---------KMYPGRASAS-PSLDVLITLL 327

Query: 126 NYGMENLRHFLRSHVNMARLFERLVS 151
           + G    +  L+    M       + 
Sbjct: 328 SLGSNGYKKLLKERKEMFSYLSNQIK 353

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* Length = 450

 Score = 48.5 bits (115), Expect = 8e-07
 Identities = 26/146 (17%), Positives = 47/146 (32%), Gaps = 10/146 (6%)

Query: 6   LFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADS 65
           L L +T    A    D L+ L  +   + I   V+ AY   +            V   D+
Sbjct: 200 LCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDA 259

Query: 66  FSLNAHKWFFATLDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIR 125
           F  +  K F   +    +   N  ++++ +         K +    S S  SL +   + 
Sbjct: 260 FVQSLDKNFMVPVGGAIIAGFNEPFIQDIS---------KMYPGRASAS-PSLDVLITLL 309

Query: 126 NYGMENLRHFLRSHVNMARLFERLVS 151
           + G    R  L+    M       + 
Sbjct: 310 SLGCSGYRKLLKERKEMFVYLSTQLK 335

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	239
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	100.0
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	100.0
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	100.0
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	100.0
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	100.0
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	100.0
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	100.0
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	99.96
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	99.95
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.88
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.87
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.87
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	99.84
3e77_A	377	Phosphoserine aminotransferase; SERC, PLP, structu	99.84
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	99.83
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	99.83
3qm2_A	386	Phosphoserine aminotransferase; structural genomic	99.81
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	99.8
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	99.79
3m5u_A	361	Phosphoserine aminotransferase; alpha-beta half sa	99.79
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	99.79
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	99.78
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	99.78
1iug_A	352	Putative aspartate aminotransferase; wild type, py	99.77
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	99.77
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	99.77
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	99.76
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	99.76
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	99.76
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	99.76
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	99.75
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	99.75
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	99.75
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	99.75
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	99.74
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	99.74
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	99.74
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.73
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	99.72
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	99.72
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	99.72
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	99.71
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	99.7
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	99.69
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	99.69
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	99.68
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	99.68
2fyf_A	398	PSAT, phosphoserine aminotransferase; PLP-dependen	99.67
2c0r_A	362	PSAT, phosphoserine aminotransferase; pyridoxal-5'	99.67
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	99.66
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	99.65
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	99.62
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	99.61
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	99.61
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	99.61
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	99.6
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	99.6
1svv_A	359	Threonine aldolase; structural genomics, structura	99.6
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	99.58
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	99.57
2fnu_A	375	Aminotransferase; protein-product complex, structu	99.56
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	99.55
1w23_A	360	Phosphoserine aminotransferase; pyridoxal-5'-phosp	99.53
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	99.53
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	99.53
3pj0_A	359	LMO0305 protein; structural genomics, joint center	99.53
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	99.53
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	99.52
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	99.52
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	99.51
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	99.51
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	99.5
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	99.5
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	99.5
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	99.49
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	99.49
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	99.49
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	99.49
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	99.49
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	99.48
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	99.47
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	99.47
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	99.46
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	99.46
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	99.46
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	99.45
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	99.45
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	99.45
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	99.43
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	99.43
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	99.42
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	99.42
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	99.41
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	99.41
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	99.41
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	99.4
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	99.4
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	99.4
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	99.4
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	99.4
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	99.4
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	99.39
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	99.39
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	99.39
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	99.39
3nra_A	407	Aspartate aminotransferase; structural genomics, j	99.38
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	99.38
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	99.38
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	99.37
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	99.37
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	99.37
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	99.37
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	99.36
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	99.36
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	99.34
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	99.34
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	99.34
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	99.34
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	99.34
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	99.33
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	99.33
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	99.33
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	99.32
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	99.32
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	99.31
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	99.31
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	99.3
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	99.3
1o69_A	394	Aminotransferase; structural genomics, unknown fun	99.3
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	99.3
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	99.3
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	99.3
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	99.3
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	99.3
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	99.29
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	99.29
1vp4_A	425	Aminotransferase, putative; structural genomics, j	99.29
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	99.28
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	99.28
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	99.27
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	99.27
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	99.26
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	99.25
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	99.25
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	99.25
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	99.25
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	99.25
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	99.23
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	99.23
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	99.22
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	99.22
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	99.21
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	99.21
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	99.21
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.21
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	99.2
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	99.2
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	99.2
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	99.19
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	99.19
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	99.19
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	99.17
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	99.17
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	99.17
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	99.16
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	99.16
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	99.15
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	99.15
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	99.14
1z7d_A	433	Ornithine aminotransferase; structural genomics co	99.14
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	99.14
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	99.13
3ele_A	398	Amino transferase; RER070207001803, structural gen	99.12
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	99.12
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	99.12
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	99.11
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	99.11
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	99.1
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	99.1
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	99.1
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	99.1
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	99.09
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	99.08
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	99.08
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	99.08
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.06
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	99.06
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	99.05
3ou5_A	490	Serine hydroxymethyltransferase, mitochondrial; st	99.05
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	99.03
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	99.03
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	99.03
3hmu_A	472	Aminotransferase, class III; structural genomics,	99.02
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	98.57
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	99.0
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	99.0
3n75_A	715	LDC, lysine decarboxylase, inducible; pyridoxal-5'	99.0
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	98.99
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	98.99
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	98.97
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	98.96
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	98.95
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	98.92
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	98.91
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	98.87
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	98.86
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	98.85
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	98.83
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	98.82
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	98.82
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	98.81
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	98.78
3rq1_A	418	Aminotransferase class I and II; structural genomi	98.76
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	98.76
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	98.73
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	98.71
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	98.69
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	98.65
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	98.63
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	98.61
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	98.6
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	98.59
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	98.57
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	98.56
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	98.52
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	98.49
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	98.47
4atq_A	456	4-aminobutyrate transaminase; transferase; HET: PL	98.31
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	97.5
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	98.0
4e3q_A	473	Pyruvate transaminase; aminotransferase, transfera	97.86
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	97.66
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	97.55
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	97.14
3k7y_A	405	Aspartate aminotransferase; aminotrans pyridoxal p	91.59
4h51_A	420	Aspartate aminotransferase; ssgcid, structural gen	90.53

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=100.00  E-value=3.7e-39  Score=286.01  Aligned_cols=217  Identities=41%  Similarity=0.802  Sum_probs=181.3

Q ss_pred             CCCccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438            1 AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC   80 (239)
Q Consensus         1 ~g~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~   80 (239)
                      +|..|++|++++++|.+|.++|+++|+++|++||+|+||||||+++.+..++++..+.+++.+|++++++|||+++|.|+
T Consensus       231 ~~~~~~~v~~~~~~t~~G~~~~l~~I~~la~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~  310 (475)
T 3k40_A          231 EGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDC  310 (475)
T ss_dssp             TTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSC
T ss_pred             CCCccEEEEEEecCCCCcCcCCHHHHHHHHHHhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCCce
Confidence            36679999999999999999999999999999999999999999988877777766677767999999999999999999


Q ss_pred             eEEEeeCcccccccccC---------CCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHh
Q 048438           81 CCLWATNPEYLKNKATE---------SKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVS  151 (239)
Q Consensus        81 g~l~~~~~~~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~  151 (239)
                      |+++++++..+......         .+...++.+++++++|++.++++|.+++.+|.+++++++++..++++++.+.|+
T Consensus       311 g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~  390 (475)
T 3k40_A          311 SAMWLKDPSWVVNAFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCV  390 (475)
T ss_dssp             EEEEESSGGGC---------------------------CCCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEeCHHHHHHHhcCCccccCCCcCCCCCCcccccccCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999876554322110         011244567888999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEec
Q 048438          152 GDKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATG  231 (239)
Q Consensus       152 ~~~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~  231 (239)
                      +++|++++.++.+++|+|++++.                      +..+..+.++|+++|.++++++.+.|..++|++++
T Consensus       391 ~~~g~~l~~~~~~~iv~f~~~~~----------------------~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~  448 (475)
T 3k40_A          391 ADSRFELAAEINMGLVCFRLKGS----------------------NERNEALLKRINGRGHIHLVPAKIKDVYFLRMAIC  448 (475)
T ss_dssp             HSTTEEESSCCBTTEEEEEESSC----------------------HHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECC
T ss_pred             cCCCEEEecCCceEEEEEEeCCc----------------------hHHHHHHHHHHHhCCcEEEEeeEECCEEEEEEEeC
Confidence            99999999888999999999763                      34567889999999999999999999999999999


Q ss_pred             CCCCCcCC
Q 048438          232 ATLTEERH  239 (239)
Q Consensus       232 ~~~t~~~~  239 (239)
                      +++|+++|
T Consensus       449 ~~~tt~~d  456 (475)
T 3k40_A          449 SRFTQSED  456 (475)
T ss_dssp             CTTCCHHH
T ss_pred             CCCCCHHH
Confidence            99987654

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=100.00  E-value=4.7e-39  Score=285.75  Aligned_cols=217  Identities=39%  Similarity=0.768  Sum_probs=187.9

Q ss_pred             CCCccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438            1 AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC   80 (239)
Q Consensus         1 ~g~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~   80 (239)
                      +|..|++|++++|+|.+|.++||++|+++|++||+|+||||||+++++..++++....+++.+||+++++|||+++|.||
T Consensus       238 ~g~~~~~vv~~~~~t~~G~id~l~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~  317 (481)
T 4e1o_A          238 RGLVPVFVCATLGTTGVCAFDCLSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDC  317 (481)
T ss_dssp             TTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSC
T ss_pred             CCCCcEEEEEecCCCCCcCcCCHHHHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCCce
Confidence            36779999999999999999999999999999999999999999998878777776777777899999999999999999


Q ss_pred             eEEEeeCcccccccccC---------CCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHh
Q 048438           81 CCLWATNPEYLKNKATE---------SKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVS  151 (239)
Q Consensus        81 g~l~~~~~~~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~  151 (239)
                      |+++++++..+......         .....++.+|+++.+|++.++++|.+++.+|.+++++++++..++++++.+.|+
T Consensus       318 g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~  397 (481)
T 4e1o_A          318 TGFWVKDKYKLQQTFSVNPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVR  397 (481)
T ss_dssp             EEEEESBHHHHHTTTCCCCGGGCCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEeCHHHHHHHhcCCchhccCcccCCCCCcccccccCCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999876443221100         012234556788899999999999999999999999999999999999999999


Q ss_pred             CCCCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEec
Q 048438          152 GDKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATG  231 (239)
Q Consensus       152 ~~~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~  231 (239)
                      +++|++++.++.+++|+|++++.                      +..+..+.++|.++|.++++++.+.|..++|++++
T Consensus       398 ~~~g~~~~~~~~~~~v~f~~~~~----------------------~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~  455 (481)
T 4e1o_A          398 NDPSFEIPAKRHLGLVVFRLKGP----------------------NSLTENVLKEIAKAGRLFLIPATIQDKLIIRFTVT  455 (481)
T ss_dssp             TCTTEECCSCCCSSEEEEEESSC----------------------HHHHHHHHHHHHHHCSSBCEEEEETTEEEEEEECC
T ss_pred             cCCCeEEecCCceeEEEEEeCCc----------------------hHHHHHHHHHHHhCCeEEEEeeEECCEEEEEEEeC
Confidence            99999999888999999999763                      35567889999999998889999999999999999


Q ss_pred             CCCCCcCC
Q 048438          232 ATLTEERH  239 (239)
Q Consensus       232 ~~~t~~~~  239 (239)
                      +++|+++|
T Consensus       456 ~~~tt~~d  463 (481)
T 4e1o_A          456 SQFTTRDD  463 (481)
T ss_dssp             CTTCCHHH
T ss_pred             CCCCCHHH
Confidence            99987654

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=100.00  E-value=2.4e-36  Score=270.15  Aligned_cols=232  Identities=22%  Similarity=0.400  Sum_probs=189.3

Q ss_pred             CCCccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438            1 AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC   80 (239)
Q Consensus         1 ~g~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~   80 (239)
                      +|..|++|++++++|.+|.++||++|+++|++||+|+|||+||+++.+..++++..+.+++++|++++++|||+++|.||
T Consensus       245 ~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~  324 (511)
T 3vp6_A          245 KGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQC  324 (511)
T ss_dssp             TTCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCC
T ss_pred             cCCCcEEEEEecCCCCCcccccHHHHHHHHHHcCCEEEEEccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcCe
Confidence            36779999999999999999999999999999999999999999999988887777777777999999999999999999


Q ss_pred             eEEEeeCcccccccc-----------cCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Q 048438           81 CCLWATNPEYLKNKA-----------TESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERL  149 (239)
Q Consensus        81 g~l~~~~~~~l~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~  149 (239)
                      |+++++++..+....           .......++..++++++|++.++++|.+++.+|.+++++++++..++++++.+.
T Consensus       325 g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~  404 (511)
T 3vp6_A          325 SAILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAK  404 (511)
T ss_dssp             EEEEESSTTHHHHHHCCCCTTTCCSSCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEeCHHHHHHHhccCCccccCcccccccccCccCCCCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            999998764332211           001112334567888999999999999999999999999999999999999999


Q ss_pred             HhCCCCeEEEc--CCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCE-eEE
Q 048438          150 VSGDKRFEVVF--PCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGI-YAI  226 (239)
Q Consensus       150 l~~~~g~~~~~--~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~-~~l  226 (239)
                      |+++||++++.  ++..++|+|++.+...+.       ..+...+....+..+..+.++|.++|.+++.++...+. .++
T Consensus       405 L~~~pg~~l~~~~~p~~~~v~f~~~p~~~~~-------~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~l  477 (511)
T 3vp6_A          405 IKNREEFEMVFNGEPEHTNVCFWYIPQSLRG-------VPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFF  477 (511)
T ss_dssp             HHSCTTEEESSSSCCSSSCEEEEECCGGGSS-------CCCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEEEETTEEEEE
T ss_pred             HhcCCCEEEEecCCCCeEEEEEEEeCccccc-------cccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEeCCceEEE
Confidence            99999999998  588999999997643210       00011122345667778999999999988887666654 689


Q ss_pred             EEEecCCCCCcCC
Q 048438          227 RFATGATLTEERH  239 (239)
Q Consensus       227 R~~~~~~~t~~~~  239 (239)
                      |++++++.|+++|
T Consensus       478 Ri~~~~~~~t~~d  490 (511)
T 3vp6_A          478 RMVISNPAATQSD  490 (511)
T ss_dssp             EECCCCTTCCHHH
T ss_pred             EEEecCCCCCHHH
Confidence            9999999988764

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=100.00  E-value=2.4e-35  Score=262.04  Aligned_cols=216  Identities=43%  Similarity=0.792  Sum_probs=181.5

Q ss_pred             CCCccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438            1 AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC   80 (239)
Q Consensus         1 ~g~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~   80 (239)
                      +|..|++|++++++|.+|.++|+++|+++|++||+|+|||+||+++.+..++++..+.+++++|++++++|||+++|.+|
T Consensus       232 ~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p~~~  311 (486)
T 1js3_A          232 AGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDC  311 (486)
T ss_dssp             TTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSC
T ss_pred             CCCCceEEEEeCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCCcce
Confidence            36789999999999999999999999999999999999999999998877766665566667999999999999999999


Q ss_pred             eEEEeeCcccccccc---cC---C-----CCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Q 048438           81 CCLWATNPEYLKNKA---TE---S-----KPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERL  149 (239)
Q Consensus        81 g~l~~~~~~~l~~~~---~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~  149 (239)
                      |+++++++..+....   ..   .     ....++..++++.+|++.++++|.+++.+|.+++++++++..++++++.+.
T Consensus       312 G~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~  391 (486)
T 1js3_A          312 SAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAF  391 (486)
T ss_dssp             EEEEESCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEeCHHHHHHHhcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            999998764321111   00   0     012333456778899999999999999999999999999999999999999


Q ss_pred             HhCCCCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEE
Q 048438          150 VSGDKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFA  229 (239)
Q Consensus       150 l~~~~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~  229 (239)
                      |+++++++++.++..++++|++++.                      +.++..+.++|.++|.++++++.+.+..++|++
T Consensus       392 L~~~~~~~~~~~~~~~~v~f~~~~~----------------------~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~  449 (486)
T 1js3_A          392 VLQDPRFEVCAEVTLGLVCFRLKGS----------------------DGLNEALLERINSARKIHLVPCRLRGQFVLRFA  449 (486)
T ss_dssp             HHHCTTEEECSCCCSSEEEEEESSC----------------------HHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEE
T ss_pred             HhcCCCeEEeCCCceeEEEEEecCh----------------------HHHHHHHHHHHHhcCCEEEEEEEECCEEEEEEE
Confidence            9999999998888899999998752                      345568888898889888888888899999999


Q ss_pred             ecCCCCCcC
Q 048438          230 TGATLTEER  238 (239)
Q Consensus       230 ~~~~~t~~~  238 (239)
                      ++++.++++
T Consensus       450 ~~~~~~t~~  458 (486)
T 1js3_A          450 ICSRKVESG  458 (486)
T ss_dssp             CCCTTCCHH
T ss_pred             eCCCCCCHH
Confidence            999887654

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=100.00  E-value=1.6e-34  Score=257.57  Aligned_cols=219  Identities=25%  Similarity=0.430  Sum_probs=177.8

Q ss_pred             CCccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccce
Q 048438            2 GLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCC   81 (239)
Q Consensus         2 g~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g   81 (239)
                      |..|++|++++++|.+|.++|+++|+++|++||+|+|||+||+++..+.+ ++..+.+++.+|++++++|||+++|.++|
T Consensus       256 ~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~~l~vD~a~~~~~~~~~-~~~~~~gi~~~D~i~~s~hK~l~~p~~~G  334 (497)
T 2qma_A          256 GLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAYGGALILSS-HKSRLKGVERAHSISVDFHKLFYQTISCG  334 (497)
T ss_dssp             TCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGST-TGGGGTTGGGCSEEEEETTTTTCCCSSCE
T ss_pred             CCcceEEEEcCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhhHHHHhCc-chHhhcCcccCCEEEEcchhccCCCcceE
Confidence            55688999999999999999999999999999999999999999988776 55555666569999999999999999999


Q ss_pred             EEEeeCcccccccccCCC-------CccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 048438           82 CLWATNPEYLKNKATESK-------PVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK  154 (239)
Q Consensus        82 ~l~~~~~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~  154 (239)
                      +++++++..+........       ...++..++++++|++.++++|.+++.+|.+++++++++..++++++.+.|++++
T Consensus       335 ~l~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~  414 (497)
T 2qma_A          335 ALLVNDKSNFKFLLHHADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTND  414 (497)
T ss_dssp             EEEESCGGGGGGGCC--------------------CCSCCCTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             EEEEeCHHHHHHhcCCchhcCCccccCCCccccCCCCCCchhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            999987654432211100       0123345667788999999999999999999999999999999999999999999


Q ss_pred             CeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCC
Q 048438          155 RFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATL  234 (239)
Q Consensus       155 g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~  234 (239)
                      +++++.+++.++|+|++.+...                  ..++++..+.+.|.++|..+.+++.+.|..++|++++++.
T Consensus       415 ~~~~~~~~~~~~v~f~~~~~~~------------------~~~~l~~~l~~~l~~~G~~~~~~~~~~g~~~lRis~~~~~  476 (497)
T 2qma_A          415 QFELLAEPSLSTVLFRATHETA------------------DLDELNKALRLEALTRGIAVLGETIVDGKTALKFTILNPC  476 (497)
T ss_dssp             TEEECSCCSSSEEEEEECCSSS------------------CHHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTT
T ss_pred             CeEEEcCCCceEEEEEEcCCcc------------------CHHHHHHHHHHHHHhCCCEEEEeeEECCEEEEEEEecCCC
Confidence            9999888889999999976321                  1245667888889999999888888889999999998888


Q ss_pred             CCcCC
Q 048438          235 TEERH  239 (239)
Q Consensus       235 t~~~~  239 (239)
                      ++++|
T Consensus       477 ~t~ed  481 (497)
T 2qma_A          477 LTTSD  481 (497)
T ss_dssp             CCHHH
T ss_pred             CCHHH
Confidence            77654

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=100.00  E-value=4.6e-34  Score=254.90  Aligned_cols=231  Identities=22%  Similarity=0.404  Sum_probs=181.9

Q ss_pred             CCccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccce
Q 048438            2 GLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCC   81 (239)
Q Consensus         2 g~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g   81 (239)
                      |..|.+|++++++|.+|.++|+++|+++|++||+|+|||+||+++.+..++++..+.+++++|++++++|||+++|.+||
T Consensus       243 g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g~~lhvD~a~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p~~~g  322 (504)
T 2okj_A          243 GYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCS  322 (504)
T ss_dssp             TCEEEEEEECBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCE
T ss_pred             CCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEehhhhhHHHhCHhhHhhcCCcccCCEEEECchhhcCCCcceE
Confidence            66799999999999999999999999999999999999999999988776665556666579999999999999999999


Q ss_pred             EEEeeCccccccc---ccC---C-----CCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Q 048438           82 CLWATNPEYLKNK---ATE---S-----KPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLV  150 (239)
Q Consensus        82 ~l~~~~~~~l~~~---~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l  150 (239)
                      +++++++..+...   ...   .     ...+++..++++.+||+.++++|++++.+|.+++++++++..++++++.+.|
T Consensus       323 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L  402 (504)
T 2okj_A          323 AILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKI  402 (504)
T ss_dssp             EEEESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCGGGSSCSSCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECHHHHHHHhcCCCccccCCcccccCcCCcccCCCCCCCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999875443211   000   0     0113344567788999999999999999999999999999999999999999


Q ss_pred             hCCCCeEEEc--CCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCE-eEEE
Q 048438          151 SGDKRFEVVF--PCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGI-YAIR  227 (239)
Q Consensus       151 ~~~~g~~~~~--~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~-~~lR  227 (239)
                      +++++++++.  ++..++++|++.+......       .....-.+..++.+..+.++|.++|.+++.++.+.|. .++|
T Consensus       403 ~~~~~~~~~~~~~p~~~~v~f~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lR  475 (504)
T 2okj_A          403 KNREEFEMVFNGEPEHTNVCFWYIPQSLRGV-------PDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFR  475 (504)
T ss_dssp             TTCTTEEESSSSCCSSSCEEEEECCGGGSSC-------CCCHHHHHHHTTHHHHHHHHHHHHTSCEEEEEEETTEEEEEE
T ss_pred             hcCCCEEEEecCCCCeEEEEEEEeCcccccc-------ccchhhHHHHHHHHHHHHHHHHhCCcEEEEeeEECCceEEEE
Confidence            9999999987  5788899999865310000       0000011223345678889999999988887777775 7999


Q ss_pred             EEecCCCCCcCC
Q 048438          228 FATGATLTEERH  239 (239)
Q Consensus       228 ~~~~~~~t~~~~  239 (239)
                      ++++++.|+++|
T Consensus       476 is~~~~~~t~ed  487 (504)
T 2okj_A          476 MVISNPAATQSD  487 (504)
T ss_dssp             ECCCCTTCCHHH
T ss_pred             EEeCCCCCCHHH
Confidence            999988887764

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=100.00  E-value=1.4e-33  Score=252.43  Aligned_cols=231  Identities=28%  Similarity=0.448  Sum_probs=181.7

Q ss_pred             CCccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccce
Q 048438            2 GLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCC   81 (239)
Q Consensus         2 g~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g   81 (239)
                      |..|.+|++++++|.+|.++|+++|+++|++||+|+|||+||+++.++.++++..+.+++++|++++++|||+++|.|||
T Consensus       257 g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~~l~vD~a~~~~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p~g~G  336 (515)
T 2jis_A          257 GAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCS  336 (515)
T ss_dssp             TCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCE
T ss_pred             CCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEehhhhhHHHhChhhHhhcCCCccCCEEEECcccccCCCCCee
Confidence            56799999999999999999999999999999999999999999999887766656676679999999999999999999


Q ss_pred             EEEeeCc-ccccccc---cC---C-----CCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Q 048438           82 CLWATNP-EYLKNKA---TE---S-----KPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERL  149 (239)
Q Consensus        82 ~l~~~~~-~~l~~~~---~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~  149 (239)
                      +++++++ .++....   ..   .     ...+++..++++.+||++++++|++++.+|.+++++++++..++++++.+.
T Consensus       337 ~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~  416 (515)
T 2jis_A          337 ALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEE  416 (515)
T ss_dssp             EEEESCCSCHHHHHHCC---------CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeChHHHHHHHhcCCchhccCCcccccccCCCCCCCCCCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999876 4433210   00   0     011234446678899999999999999999999999999999999999999


Q ss_pred             HhCCCCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECC-EeEEEE
Q 048438          150 VSGDKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGG-IYAIRF  228 (239)
Q Consensus       150 l~~~~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g-~~~lR~  228 (239)
                      |+++++++++.++..++|+|++.+.....     .  .+...-.+..++++..+.+.|.++|.++++++.+.+ ..++|+
T Consensus       417 L~~~~g~~~~~~~~~~~v~f~~~p~~~~~-----~--~~~~~~~~~l~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~lRi  489 (515)
T 2jis_A          417 MKKREGFELVMEPEFVNVCFWFVPPSLRG-----K--QESPDYHERLSKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRV  489 (515)
T ss_dssp             HHTSTTEEESSCCSSSEEEEEECCGGGTT-----C--TTSTTHHHHHHTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEE
T ss_pred             HhcCCCEEEeCCCCeeEEEEEEeCccccc-----c--ccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEECCceEEEEE
Confidence            99999999998888889999985421100     0  000011233445566788889999998887777666 479999


Q ss_pred             EecCCCCCcCC
Q 048438          229 ATGATLTEERH  239 (239)
Q Consensus       229 ~~~~~~t~~~~  239 (239)
                      +++++.++++|
T Consensus       490 s~~~~~~t~ed  500 (515)
T 2jis_A          490 VVANSALTCAD  500 (515)
T ss_dssp             ECCCTTCCHHH
T ss_pred             EeCCCCCCHHH
Confidence            99778777653

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=99.96  E-value=5.7e-28  Score=212.72  Aligned_cols=213  Identities=18%  Similarity=0.253  Sum_probs=157.8

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHh------CCEEEEecccccccccC--cccccccCCCCCcceEEEcCcccCC
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQF------GIWVHVDAAYAGSACIF--PEFRHFIDGVEGADSFSLNAHKWFF   75 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~------gi~lhvD~A~~~~~~~~--~~~~~~~~~~~~~Ds~~~~~hK~l~   75 (239)
                      .|.+|++++++|.+|.++|+++|+++|+++      |+|+|||+||+++..++  +..+..+ .+.++|++++++|||++
T Consensus       187 ~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~hK~~~  265 (452)
T 2dgk_A          187 NTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDF-RLPRVKSISASGHKFGL  265 (452)
T ss_dssp             TEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCST-TSTTEEEEEEETTTTTC
T ss_pred             CCEEEEEEcCCcCCcccCCHHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhc-CCCCCcEEEECcccccC
Confidence            478999999999999999999999999996      99999999999876532  2211112 24569999999999999


Q ss_pred             CcccceEEEeeCcccccccccCCCCccC--CCCceecCCCCC-ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhC
Q 048438           76 ATLDCCCLWATNPEYLKNKATESKPVVD--YKDWQITLSRSF-RSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSG  152 (239)
Q Consensus        76 ~P~g~g~l~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~  152 (239)
                      +|.++|+++++++..+.........+..  ...+++.++|++ .++++|.+++.+|.+++++++++..++++++.+.|++
T Consensus       266 ~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~  345 (452)
T 2dgk_A          266 APLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAK  345 (452)
T ss_dssp             CCSSCEEEEESSGGGSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCeEEEEEcCHHHHHHHhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999776444221100001110  112334556666 6788999999999999999999999999999999999


Q ss_pred             CCCeEEEcC----CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHH-HHHHHHHHhcCcE---EEEEEEECCEe
Q 048438          153 DKRFEVVFP----CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFN-RELLESINASGKA---YMTNVVLGGIY  224 (239)
Q Consensus       153 ~~g~~~~~~----~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~g~~---~~~~~~~~g~~  224 (239)
                      +++++++.+    +..++++|++++...                    +.++ ..+.++|.++|..   +..+..+.+..
T Consensus       346 ~~~~~~~~~~~~~~~~~~v~f~~~~~~~--------------------~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~  405 (452)
T 2dgk_A          346 LGPYEFICTGRPDEGIPAVCFKLKDGED--------------------PGYTLYDLSERLRLRGWQVPAFTLGGEATDIV  405 (452)
T ss_dssp             TSSEEEEEECCTTTBSSEEEEEECTTCC--------------------CSCCHHHHHHHHHHTTCBCCEEECSTTCTTCE
T ss_pred             CCCeEEecCCCCCCCeEEEEEEecCccc--------------------ccCCHHHHHHHHHhcCCeeeeeeCCcccCCeE
Confidence            988999865    578999999975310                    0011 3677778878874   33223344677


Q ss_pred             EEEEEecCCCCCc
Q 048438          225 AIRFATGATLTEE  237 (239)
Q Consensus       225 ~lR~~~~~~~t~~  237 (239)
                      ++|+++++++|.+
T Consensus       406 ~lRis~~~~~t~e  418 (452)
T 2dgk_A          406 VMRIMCRRGFEMD  418 (452)
T ss_dssp             EEEEECCTTCCHH
T ss_pred             EEEEEecCCCCHH
Confidence            9999999998854

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=99.95  E-value=1.8e-27  Score=212.33  Aligned_cols=212  Identities=16%  Similarity=0.199  Sum_probs=160.0

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHh------CCEEEEeccccccccc--CcccccccCCCCCcceEEEcCcccCC
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQF------GIWVHVDAAYAGSACI--FPEFRHFIDGVEGADSFSLNAHKWFF   75 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~------gi~lhvD~A~~~~~~~--~~~~~~~~~~~~~~Ds~~~~~hK~l~   75 (239)
                      .|.+|++++++|.+|.++|+++|+++|+++      |+|+|||+||+++..+  .+..+..+. +.++|++++++|||++
T Consensus       202 ~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~-~~~~D~v~~s~hK~l~  280 (502)
T 3hbx_A          202 NTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFR-LPLVKSINVSGHKYGL  280 (502)
T ss_dssp             TEEEEEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTT-STTEEEEEEETTTTTC
T ss_pred             CCEEEEEecCCCCCCcccCHHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccccC-CCCceEEEECcccccC
Confidence            478999999999999999999999999999      9999999999977643  232222222 3569999999999999


Q ss_pred             CcccceEEEeeCcccccccccCCCCccC--CCCceecCCCCC-ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhC
Q 048438           76 ATLDCCCLWATNPEYLKNKATESKPVVD--YKDWQITLSRSF-RSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSG  152 (239)
Q Consensus        76 ~P~g~g~l~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~  152 (239)
                      +|.|+|+++++++..+.........+..  ...+.+..+|+. .++++|.+++.++.+++++++++..++++++.+.|++
T Consensus       281 ~p~g~G~~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~  360 (502)
T 3hbx_A          281 VYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEK  360 (502)
T ss_dssp             CCSSCEEEEESSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCeEEEEEeCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999876554322110000110  012333445554 6788999999999999999999999999999999999


Q ss_pred             CCCeEEEcC-CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEE---ECCEeEEEE
Q 048438          153 DKRFEVVFP-CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVV---LGGIYAIRF  228 (239)
Q Consensus       153 ~~g~~~~~~-~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~---~~g~~~lR~  228 (239)
                      +++++++.+ +..++|+|++++...              .     +  ...+.++|.++|.++.....   ..+..++|+
T Consensus       361 ~~~~~~~~~~~~~~~v~f~~~~~~~--------------~-----~--~~~l~~~L~~~Gi~v~~~~~p~~~~~~~~lRi  419 (502)
T 3hbx_A          361 TERFNIVSKDEGVPLVAFSLKDSSC--------------H-----T--EFEISDMLRRYGWIVPAYTMPPNAQHITVLRV  419 (502)
T ss_dssp             TTCEEECSCSSSSSEEEEEESSCSS--------------C-----C--HHHHHHHHHTTTCBCCEEECCTTCTTCEEEEE
T ss_pred             CCCEEEEeCCCCceEEEEEecCCCc--------------C-----C--HHHHHHHHHhCCcEEeeccCCcccCCceEEEE
Confidence            988999887 789999999976310              0     0  12677888888887543332   346789999


Q ss_pred             EecCCCCCc
Q 048438          229 ATGATLTEE  237 (239)
Q Consensus       229 ~~~~~~t~~  237 (239)
                      +++..+|.+
T Consensus       420 sv~~~~t~e  428 (502)
T 3hbx_A          420 VIREDFSRT  428 (502)
T ss_dssp             ECCTTCCHH
T ss_pred             EeCCCCCHH
Confidence            999877764

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=99.88  E-value=1e-21  Score=174.59  Aligned_cols=205  Identities=17%  Similarity=0.210  Sum_probs=145.8

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcc------cccccCCCCCcceEEEcCcccCCCc
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPE------FRHFIDGVEGADSFSLNAHKWFFAT   77 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~------~~~~~~~~~~~Ds~~~~~hK~l~~P   77 (239)
                      .|.+|+++.++|.+|.++|+++|+++|++||+|+|||+||+++..++.+      .........++|++++++|||+++|
T Consensus       206 ~~~~v~~~~p~nptG~~~~l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~d~~~~s~~K~l~~~  285 (497)
T 3mc6_A          206 NTVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAP  285 (497)
T ss_dssp             SEEEEEEETTCTTTCCCCSCTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTCCEEEEETTTTTCCC
T ss_pred             CCEEEEEECCCCCCCcCCCHHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCCCcEEEECchhhcCCC
Confidence            4789999999999999999999999999999999999999977654211      0000111235999999999999999


Q ss_pred             ccceEEEeeCcccccccccCCCCcc--CCCCceecCCCCCC--hHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhC-
Q 048438           78 LDCCCLWATNPEYLKNKATESKPVV--DYKDWQITLSRSFR--SLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSG-  152 (239)
Q Consensus        78 ~g~g~l~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~-  152 (239)
                      .++|+++++++............+.  .+....+ .+++..  .+++|.+++.++.++++++.++..++++++.+.|++ 
T Consensus       286 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~  364 (497)
T 3mc6_A          286 KGSSVIMYRNSDLRMHQYYVNPAWTGGLYGSPTL-AGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQEN  364 (497)
T ss_dssp             SSCEEEECSSHHHHTTTSCCBTTCTTSCBCCSSS-CSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             CCceeEEecCHHHHhhhhcccccccCCCcCCcCc-ccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999876533221110000000  0111122 234433  456888999999999999999999999999999999 


Q ss_pred             CCCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecC
Q 048438          153 DKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGA  232 (239)
Q Consensus       153 ~~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~  232 (239)
                      ++|++++.++..++++|+.++..                        ...+.+.|.++|..+..   ......+|++++ 
T Consensus       365 ~~g~~~~~~~~~~~v~~~~~~~~------------------------~~~l~~~L~~~Gi~v~~---~~~~~~~ri~~~-  416 (497)
T 3mc6_A          365 IPDLDIMGNPRYSVISFSSKTLN------------------------IHELSDRLSKKGWHFNA---LQKPVALHMAFT-  416 (497)
T ss_dssp             CTTCEECSCCCSSEEEEECTTTT------------------------HHHHHHHHHTTTCBCEE---CCSSCCEEEECC-
T ss_pred             CCCEEEecCCCeeEEEEeCCCCC------------------------HHHHHHHHHhCCEEEec---CCCCCeEEEEEe-
Confidence            79999998888999999865421                        12567778888865432   122346799987 


Q ss_pred             CCCCc
Q 048438          233 TLTEE  237 (239)
Q Consensus       233 ~~t~~  237 (239)
                      ..|.+
T Consensus       417 ~~t~e  421 (497)
T 3mc6_A          417 RLSAH  421 (497)
T ss_dssp             TTTTC
T ss_pred             CCCHH
Confidence            44443

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=99.87  E-value=1.8e-21  Score=173.87  Aligned_cols=204  Identities=20%  Similarity=0.196  Sum_probs=146.2

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccC--------cccccccCCCCCcceEEEcCcccCC
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIF--------PEFRHFIDGVEGADSFSLNAHKWFF   75 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~--------~~~~~~~~~~~~~Ds~~~~~hK~l~   75 (239)
                      .+.+|+++..+|.+|.++|+++|+++|++||+|+|||+||+++.++.        +.+.   ....++|++++++|||++
T Consensus       239 ~~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~---~~~~g~d~~~~s~~K~l~  315 (514)
T 3mad_A          239 NTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFD---FRLEGVTSVSADTHKYGY  315 (514)
T ss_dssp             TEEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCS---TTSTTCCEEEECTTTTTC
T ss_pred             CCEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCccc---ccCCCCcEEEECchhccC
Confidence            46788999999999999999999999999999999999999876531        1111   122359999999999999


Q ss_pred             CcccceEEEeeCcccccccccCCCCcc--CCCCceecCCCCC-ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhC
Q 048438           76 ATLDCCCLWATNPEYLKNKATESKPVV--DYKDWQITLSRSF-RSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSG  152 (239)
Q Consensus        76 ~P~g~g~l~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~  152 (239)
                      +|.++|+++++++............+.  .+......+++.. ..+++|.+++.++.+++++++++..++++++.+.|++
T Consensus       316 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~  395 (514)
T 3mad_A          316 GAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRA  395 (514)
T ss_dssp             CCSSCEEEEESSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCeEEEEEeCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999976543322110000000  0011122233332 2478889999899999999999999999999999999


Q ss_pred             CCCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecC
Q 048438          153 DKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGA  232 (239)
Q Consensus       153 ~~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~  232 (239)
                      +++++++.++ .+++.|...+..                        ...+.++|.++|..+ ..  ......+|+++++
T Consensus       396 ~~g~~~~~~~-~~~~~~~~~~~~------------------------~~~l~~~L~~~Gi~v-~g--~~~~~~~Ri~~~~  447 (514)
T 3mad_A          396 IPSLKILGDP-LWVIAVASDELN------------------------IYQVMEEMAGRGWRL-NG--LHRPPAFHVALTL  447 (514)
T ss_dssp             STTCEESSCC-SSEEEEECSSSC------------------------HHHHHHHHHTTTCBC-EE--ETTTTEEEEECCG
T ss_pred             CCCeEEeCCC-eEEEEEeCCCCC------------------------HHHHHHHHHhcCCEe-cc--CCCCCeEEEEEec
Confidence            9999988665 557777654321                        125677788887654 22  2334579999998


Q ss_pred             CCCCcC
Q 048438          233 TLTEER  238 (239)
Q Consensus       233 ~~t~~~  238 (239)
                      ++++++
T Consensus       448 ~~~~~e  453 (514)
T 3mad_A          448 RHTEPG  453 (514)
T ss_dssp             GGGSTT
T ss_pred             CCCCHH
Confidence            888754

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9

Probab=99.87  E-value=2.1e-22  Score=177.44  Aligned_cols=154  Identities=12%  Similarity=0.174  Sum_probs=117.6

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEeccccccccc-CcccccccCCCCCcceEEEcCcccCCCcccceE
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACI-FPEFRHFIDGVEGADSFSLNAHKWFFATLDCCC   82 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~-~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~   82 (239)
                      .+++|+.+.++|.+|.++|+++|+++|+++|+|+|||+||+..... .+.......+  ++|++++++|||+++|.|+|+
T Consensus       231 ~~~~vv~~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~~~g~~~~~~~~~~~--~~D~~~~s~hK~~~~p~g~G~  308 (456)
T 2z67_A          231 NRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKY--RVDAVVSSSDKNLLTPIGGGL  308 (456)
T ss_dssp             CCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTS--CCSEEEEEHHHHHCCCSSCEE
T ss_pred             CeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCcEEEECcchHHHHHhhHHHHHhhCC--CCCEEEEcCCCCcCCCCCeEE
Confidence            5778889999999999999999999999999999999988755441 1211111222  499999999999999999999


Q ss_pred             EEeeCcccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC---CeEE
Q 048438           83 LWATNPEYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK---RFEV  158 (239)
Q Consensus        83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~---g~~~  158 (239)
                      +++++++.+......      +.     +.+. ..++.+|.++..++.++++++.++..++++++.+.|++++   |+.+
T Consensus       309 l~~~~~~~~~~l~~~------~~-----g~~~~~~~~~~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~v  377 (456)
T 2z67_A          309 VYSTDAEFIKEISLS------YP-----GRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKF  377 (456)
T ss_dssp             EEESCHHHHHHHHTT------SC-----SCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCB
T ss_pred             EEEcCHHHHhhcCcC------CC-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCEe
Confidence            999765544333211      00     1111 1267788888888889999999999999999999999876   7766


Q ss_pred             EcCCCeeEEEEEEc
Q 048438          159 VFPCHFAVVCFRVS  172 (239)
Q Consensus       159 ~~~~~~~iv~f~~~  172 (239)
                      +. ++ ++++|++.
T Consensus       378 ~~-~~-~~v~~~~~  389 (456)
T 2z67_A          378 LD-VE-SPIASCIS  389 (456)
T ss_dssp             CC-CC-CSSEEEEE
T ss_pred             cC-CC-CeEEEEEe
Confidence            54 44 89999883

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=99.84  E-value=3.5e-20  Score=158.85  Aligned_cols=202  Identities=18%  Similarity=0.252  Sum_probs=142.3

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCccc---------ccccCCCCCcceEEEcCcccC
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEF---------RHFIDGVEGADSFSLNAHKWF   74 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~---------~~~~~~~~~~Ds~~~~~hK~l   74 (239)
                      .+.+|+++..+|.+|.+.|+++|.++|++||+++|+|+||+++.++....         ......  ++|++++++||++
T Consensus       171 ~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~K~~  248 (397)
T 3f9t_A          171 DVDGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL--GVDSITIDPHKMG  248 (397)
T ss_dssp             CCCEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG--TCSEEECCTTTTT
T ss_pred             CCeEEEEECCCCCCCCCCCHHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccc--cCCeEEEcccccc
Confidence            45678888899999999999999999999999999999999876543211         000111  4899999999999


Q ss_pred             CCcccceEEEeeCcccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC
Q 048438           75 FATLDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD  153 (239)
Q Consensus        75 ~~P~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~  153 (239)
                      ++|.++|+++++++......................+++. ...+..+.+++.++.++++++.++..++++++.+.|++.
T Consensus       249 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  328 (397)
T 3f9t_A          249 HCPIPSGGILFKDIGYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKEN  328 (397)
T ss_dssp             CCCSSCEEEEESSGGGGGGTCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCceEEEEeCHHHHHhhccCCccccCCCccccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            9999999999876544432211000000000011112222 244677777887778888999999999999999999998


Q ss_pred             CCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCC
Q 048438          154 KRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGAT  233 (239)
Q Consensus       154 ~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~  233 (239)
                       |++++.++..++++|.+++                          ...+.+.|.++|......   ....++|++++..
T Consensus       329 -g~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~l~~~gi~v~~~---~~~~~~Ri~~~~~  378 (397)
T 3f9t_A          329 -NFKPVIEPILNIVAIEDED--------------------------YKEVCKKLRDRGIYVSVC---NCVKALRIVVMPH  378 (397)
T ss_dssp             -TCCBSSCCSSSEEEEECTT--------------------------HHHHHHHHHHTTCBCEEC---SSSSEEEEECCTT
T ss_pred             -CCEEEcCCCccEEEEEeCC--------------------------HHHHHHHHHhCCeEEecc---CCCCEEEEEEcCC
Confidence             8888878888999888653                          125667777777553331   1247899998866


Q ss_pred             CCCc
Q 048438          234 LTEE  237 (239)
Q Consensus       234 ~t~~  237 (239)
                      +|.+
T Consensus       379 ~~~e  382 (397)
T 3f9t_A          379 IKRE  382 (397)
T ss_dssp             CCHH
T ss_pred             CCHH
Confidence            6544

>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}

Probab=99.84  E-value=7.9e-21  Score=163.17  Aligned_cols=198  Identities=11%  Similarity=0.048  Sum_probs=134.7

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLW   84 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~   84 (239)
                      +.+|.+++.+|.+|+++|+     +|+++|+++|||++|+++.++++     ++.   .|.+++++|||+ +|.|+|++|
T Consensus       153 t~lV~~~h~et~tG~~~pi-----i~~~~~~~~~vD~~q~~g~~~id-----~~~---~~~~~~s~~K~~-gp~G~g~l~  218 (377)
T 3e77_A          153 ASYVYYCANETVHGVEFDF-----IPDVKGAVLVCDMSSNFLSKPVD-----VSK---FGVIFAGAQKNV-GSAGVTVVI  218 (377)
T ss_dssp             CSCEEEESEETTTTEECSS-----CCCCTTCCEEEECTTTTTSSCCC-----GGG---CSEEEEEGGGTT-SCTTCEEEE
T ss_pred             ccEEEEeCccCchheEchh-----hhccCCCEEEEEcccccCCCCCc-----hhh---cCEEEEeccccc-CCCccEEEE
Confidence            4578899999999999999     47889999999999999999987     444   456899999999 699999999


Q ss_pred             eeCcccccccccCCCCccCCCCcee---cCCCC--CChHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 048438           85 ATNPEYLKNKATESKPVVDYKDWQI---TLSRS--FRSLKLWFVIRNYGME-NLRHFLRSHVNMARLFERLVSGDKRFEV  158 (239)
Q Consensus        85 ~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~l~~~g~~-g~~~~~~~~~~la~~l~~~l~~~~g~~~  158 (239)
                      +++. .+....+..+.++++....-   ..+++  ...+.+..+++.+-.+ |++++.++..++++++++.|++++|+.+
T Consensus       219 ~~~~-~l~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~  297 (377)
T 3e77_A          219 VRDD-LLGFALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYV  297 (377)
T ss_dssp             EETT-SCSCCCTTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEE
T ss_pred             EcHH-HHhhccCCCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCcee
Confidence            9753 33322211111222110000   01122  1234555677777667 8999999999999999999999989986


Q ss_pred             Ec-C--CCee-EEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCC
Q 048438          159 VF-P--CHFA-VVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATL  234 (239)
Q Consensus       159 ~~-~--~~~~-iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~  234 (239)
                      .. +  .+++ +++|.+++...               +    ..+...+.+.+.++|......  ......+|+|+++++
T Consensus       298 ~~~~~~~rs~~ivsf~~~~~~~---------------~----~~~~~~~l~~l~~~Gi~~~~g--~~~~g~iRiS~~~~~  356 (377)
T 3e77_A          298 CPVEPQNRSKMNIPFRIGNAKG---------------D----DALEKRFLDKALELNMLSLKG--HRSVGGIRASLYNAV  356 (377)
T ss_dssp             CCSCGGGBCSSEEEEEESSTTC---------------C----HHHHHHHHHHHHHTTEESCBC--CTTTCSEEEECCTTS
T ss_pred             cCCCHHHcCCcEEEEEcCCCCC---------------c----hhHHHHHHHHHHHCCcEEeCC--CCcCCEEEEECCCCC
Confidence            43 1  2344 69999986321               0    122234556666666654332  122245999999988


Q ss_pred             CCcC
Q 048438          235 TEER  238 (239)
Q Consensus       235 t~~~  238 (239)
                      |.+|
T Consensus       357 t~ed  360 (377)
T 3e77_A          357 TIED  360 (377)
T ss_dssp             CHHH
T ss_pred             CHHH
Confidence            8764

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=99.83  E-value=6.1e-20  Score=161.84  Aligned_cols=197  Identities=10%  Similarity=0.030  Sum_probs=136.4

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCC-CcccceE
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFF-ATLDCCC   82 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~-~P~g~g~   82 (239)
                      .+.+|++++.+|.+|.+.|+++|.++|++||+++++|+||+.+..+++     +..+ ++|++++++||++. +|.|+|+
T Consensus       214 ~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g~~~~~-----~~~~-~~D~~~~s~~K~l~~gp~~~g~  287 (465)
T 3e9k_A          214 SIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNVELY-----LHDW-GVDFACWCSYKYLNAGAGGIAG  287 (465)
T ss_dssp             GEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCC-----HHHH-TCCEEEECSSSTTCCCTTCCCE
T ss_pred             CeEEEEEeCcccCcceeecHHHHHHHHHHcCCEEEEEhhhhcCCcCCc-----hhhc-CCCEEEECcccccccCCCceEE
Confidence            567889999999999999999999999999999999999999988765     3322 39999999999994 8888999


Q ss_pred             EEeeCcccccccccCCCCc--------cC--------CCCceecCCCC--CChHHHHHHHHHhCHHHHHHHHHHHHHHHH
Q 048438           83 LWATNPEYLKNKATESKPV--------VD--------YKDWQITLSRS--FRSLKLWFVIRNYGMENLRHFLRSHVNMAR  144 (239)
Q Consensus        83 l~~~~~~~l~~~~~~~~~~--------~~--------~~~~~~~~~~~--~~~~~~~~~l~~~g~~g~~~~~~~~~~la~  144 (239)
                      +++++ ..+........+.        +.        .....++.++.  ...+++..+++.+...++++..++..++++
T Consensus       288 l~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~  366 (465)
T 3e9k_A          288 AFIHE-KHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRKKSVLLTG  366 (465)
T ss_dssp             EEECG-GGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             EEEcH-HHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence            99854 3322211100000        00        00011112222  123555666666655567888888999999


Q ss_pred             HHHHHHhCC----------CCeEEEcCC----CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhc
Q 048438          145 LFERLVSGD----------KRFEVVFPC----HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINAS  210 (239)
Q Consensus       145 ~l~~~l~~~----------~g~~~~~~~----~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  210 (239)
                      ++.+.|+++          +|++++.+.    ..++++|+++...                         ..+.+.|.++
T Consensus       367 ~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~~~~-------------------------~~l~~~L~~~  421 (465)
T 3e9k_A          367 YLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFSVPN-------------------------KDVFQELEKR  421 (465)
T ss_dssp             HHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEECCTT-------------------------CCHHHHHHTT
T ss_pred             HHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEecCCH-------------------------HHHHHHHHHC
Confidence            999999885          799998764    2678999987311                         1566677777


Q ss_pred             CcEEEEEEEECCEeEEEEEec-CCCCC
Q 048438          211 GKAYMTNVVLGGIYAIRFATG-ATLTE  236 (239)
Q Consensus       211 g~~~~~~~~~~g~~~lR~~~~-~~~t~  236 (239)
                      |.+..    ..+..++|+++. .++|.
T Consensus       422 Gi~v~----~~~~~~iRis~~~~~~t~  444 (465)
T 3e9k_A          422 GVVCD----KRNPNGIRVAPVPLYNSF  444 (465)
T ss_dssp             TEECE----EETTTEEEEBCCTTTCCH
T ss_pred             CEEEe----cCCCCEEEEeCcccCCCH
Confidence            65533    334579999984 44443

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*

Probab=99.83  E-value=2e-21  Score=169.25  Aligned_cols=149  Identities=16%  Similarity=0.158  Sum_probs=115.4

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccc-cccCCCCCcceEEEcCcccCCCcccceE
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFR-HFIDGVEGADSFSLNAHKWFFATLDCCC   82 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~-~~~~~~~~~Ds~~~~~hK~l~~P~g~g~   82 (239)
                      .|++|+++.+++.+|.+|||++|+++||+||+|+|||+|||+......+.. ...+. +++|+++.|+|||+++|.++++
T Consensus       198 ~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~A~G~~~~~~~~l~~~a~~~-~~AD~~v~S~HK~l~a~~~~~~  276 (450)
T 3bc8_A          198 HILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARV-GRIDAFVQSLDKNFMVPVGGAI  276 (450)
T ss_dssp             GEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHHH-SCCCEEEEEHHHHHSCCSSCEE
T ss_pred             CEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEECCCchhhhhhHhHHHHHhcc-cCCCEEEECCccCCCchhccEE
Confidence            578888888888888999999999999999999999999998655432211 11110 3599999999999999999999


Q ss_pred             EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC---CeEEE
Q 048438           83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK---RFEVV  159 (239)
Q Consensus        83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~---g~~~~  159 (239)
                      +++++++.+......      +...    .....++.+|..+..+|.+++++.+++..++++++++.|++++   |..++
T Consensus       277 l~~rd~~~~~~~~~~------~~g~----~s~SpsL~l~~~l~~~G~~g~~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l  346 (450)
T 3bc8_A          277 IAGFNEPFIQDISKM------YPGR----ASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLL  346 (450)
T ss_dssp             EEESCHHHHHHHHHH------SCSC----BCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBC
T ss_pred             EEecCHHHHHHHHHH------hhcC----CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCceec
Confidence            999877665443211      0000    0012358999998888999999999999999999999999888   88887


Q ss_pred             cCCC
Q 048438          160 FPCH  163 (239)
Q Consensus       160 ~~~~  163 (239)
                      ..+.
T Consensus       347 ~~~~  350 (450)
T 3bc8_A          347 QTPH  350 (450)
T ss_dssp             CCTT
T ss_pred             CCcc
Confidence            6543

>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*

Probab=99.81  E-value=3.2e-20  Score=160.07  Aligned_cols=192  Identities=12%  Similarity=0.067  Sum_probs=129.7

Q ss_pred             cEEEEEecCCCCcccc-cChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438            5 PLFLCATIGTTAITAV-DPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL   83 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i-~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l   83 (239)
                      +.+|.+++.+|.+|++ +||++|+     +|+++||||+|+.|.++++     ++.   .|.+++++|||+ +|.|+|++
T Consensus       167 t~lV~~~h~et~tG~~i~pi~~i~-----~g~~~~vDa~qs~g~~pid-----v~~---~~~~~~s~hK~l-GP~G~g~l  232 (386)
T 3qm2_A          167 AAYLHYCPNETIDGIAIDETPDFG-----PEVVVTADFSSTILSAPLD-----VSR---YGVIYAGAQKNI-GPAGLTLV  232 (386)
T ss_dssp             CSCEEECSEETTTTEECCCCCCCC-----TTCCEEEECTTTTTSSCCC-----GGG---CSEEEEETTTTT-CCTTEEEE
T ss_pred             CcEEEEECCcCCcCEecCchhhhc-----CCCEEEEEcccccCCCCCC-----ccc---cCEEEEeccccc-CCCccEEE
Confidence            4568899999999995 9999996     7999999999999999998     554   456789999999 59999999


Q ss_pred             EeeCcccccccccCCCCccCCCCceecCC----CC--CChHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHhCCCCe
Q 048438           84 WATNPEYLKNKATESKPVVDYKDWQITLS----RS--FRSLKLWFVIRNYGME-NLRHFLRSHVNMARLFERLVSGDKRF  156 (239)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~l~~~g~~-g~~~~~~~~~~la~~l~~~l~~~~g~  156 (239)
                      |+++ ..+....+..+..+++.. ..+.+    ++  ...+.+..+++.+... |++++.++..++++++++.|+++ ++
T Consensus       233 ~v~~-~~~~~~~~~~p~~~~~~~-~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~-~~  309 (386)
T 3qm2_A          233 IVRE-DLLGKAHESCPSILDYTV-LNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDNS-DF  309 (386)
T ss_dssp             EEEG-GGCSCCCTTSCGGGCHHH-HHHC-------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTC-SS
T ss_pred             EECH-HHHhhhcccCCcHHHHHH-HhhcCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC-CC
Confidence            9975 333322211111111110 01111    21  2345666778777677 89999999999999999999987 65


Q ss_pred             -EEEcCC--Ce-eEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecC
Q 048438          157 -EVVFPC--HF-AVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGA  232 (239)
Q Consensus       157 -~~~~~~--~~-~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~  232 (239)
                       ....++  ++ ++++|.+++.+.                    +   ..+.+.|.++|......  ......+|+|+++
T Consensus       310 ~~~~~~~~~rs~~iv~f~~~~~~~--------------------~---~~~~~~L~~~gI~~~~g--~~~~~~iRiS~~~  364 (386)
T 3qm2_A          310 YRNDVAQANRSRMNVPFQLADNTL--------------------D---KVFLEESFAAGLHALKG--HRVVGGMRASIYN  364 (386)
T ss_dssp             EECCBCGGGBCSSEEEEEESSGGG--------------------H---HHHHHHHHHTTEECCBC--CTTTCSEEEECCT
T ss_pred             cccCCCHHHcCceEEEEECCCccc--------------------c---HHHHHHHHHCCCEEeCC--CCCcCeEEEEcCC
Confidence             322222  33 589999975321                    1   24555566666553322  1112349999999


Q ss_pred             CCCCcC
Q 048438          233 TLTEER  238 (239)
Q Consensus       233 ~~t~~~  238 (239)
                      ++|.+|
T Consensus       365 ~~t~ed  370 (386)
T 3qm2_A          365 AMPIEG  370 (386)
T ss_dssp             TSCHHH
T ss_pred             CCCHHH
Confidence            988764

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}

Probab=99.80  E-value=1.6e-19  Score=153.14  Aligned_cols=200  Identities=13%  Similarity=0.030  Sum_probs=136.6

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHh-CCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceE
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQF-GIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCC   82 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~-gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~   82 (239)
                      .+-+|++++.+|.+|.+.|+++|+++|++| |+++|+|++|+.+..+.+     ..   .+|++++++|||+++|.|+|+
T Consensus       130 ~~~~v~~~~~~nptG~~~~l~~i~~la~~~p~~~li~D~a~~~~~~~~~-----~~---~~d~~~~s~~K~~~~~~G~g~  201 (362)
T 3ffr_A          130 DAEIICLTHNETSSGVSMPVEDINTFRDKNKDALIFVDAVSSLPYPKFD-----WT---KIDSVFFSVQKCFGLPAGLGV  201 (362)
T ss_dssp             TCCEEEEESEETTTTEECCHHHHTTSGGGSTTSEEEEECTTTTTSSCCC-----TT---SCSEEEEETTSTTCCCSCCEE
T ss_pred             CccEEEEEcCCCCcceeCCHHHHHHHHHhCCCCEEEEecccccCCcccC-----hh---HCcEEEEecccccCCCCceEE
Confidence            466788889999999999999999999999 999999999988766543     22   289999999999998999999


Q ss_pred             EEeeCcccccccc---cC---CCCccCCCC-------ceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Q 048438           83 LWATNPEYLKNKA---TE---SKPVVDYKD-------WQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFER  148 (239)
Q Consensus        83 l~~~~~~~l~~~~---~~---~~~~~~~~~-------~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~  148 (239)
                      +++++ +.+....   ..   ...+.+...       .....+.. .....+..+++.+..++++++.++..++++++.+
T Consensus       202 ~~~~~-~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~  280 (362)
T 3ffr_A          202 WILND-RVIEKSKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINT  280 (362)
T ss_dssp             EEEEH-HHHHHHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             EEECH-HHHHHhhhccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence            88754 3221111   00   001111000       00011111 1223444555555455678888999999999999


Q ss_pred             HHhCCCCeEEEcCC----CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEe
Q 048438          149 LVSGDKRFEVVFPC----HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIY  224 (239)
Q Consensus       149 ~l~~~~g~~~~~~~----~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~  224 (239)
                      .|+++||++++.+.    ...+++|.+++ .                        ...+.+.|.++|..........+..
T Consensus       281 ~L~~~~g~~~~~~~~~~~~~~~~~~~~~~-~------------------------~~~~~~~l~~~gi~~~~g~~~~~~~  335 (362)
T 3ffr_A          281 YIESSKVFSFGVEDAKLRSMTTIVANTTM-L------------------------PGEINKILEPFDMAVGAGYGSKKET  335 (362)
T ss_dssp             HHHHCSSEEESSSCGGGBCSSEEEEEESS-C------------------------HHHHHHHHGGGTEEEEECSGGGTTT
T ss_pred             HHHHccCceeccCChhhcCCceEEEecCC-C------------------------HHHHHHHHHHCCeEEecCccccCCC
Confidence            99999999987632    35678888764 2                        1267778887866555433223457


Q ss_pred             EEEEEecCCCCCc
Q 048438          225 AIRFATGATLTEE  237 (239)
Q Consensus       225 ~lR~~~~~~~t~~  237 (239)
                      ++|++++..+|.+
T Consensus       336 ~iRis~~~~~~~e  348 (362)
T 3ffr_A          336 QIRIANFPAHSLE  348 (362)
T ss_dssp             EEEEECCTTSCHH
T ss_pred             EEEEECCCCCCHH
Confidence            8999998877654

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=99.79  E-value=2e-19  Score=155.35  Aligned_cols=204  Identities=13%  Similarity=0.013  Sum_probs=133.6

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL   83 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l   83 (239)
                      .+.+|++++.+|.+|.+.|+++|+++|++||+++|+|++|+.+..+.+     .... ++|++++++|||+++|.|+|++
T Consensus       138 ~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~-----~~~~-~~d~~~~s~~K~l~~~~g~g~~  211 (411)
T 3nnk_A          138 RPRLLLTVQGDTSTTMLQPLAELGEICRRYDALFYTDATASLGGNPLE-----TDVW-GLDAVSAGMQKCLGGPSGTSPI  211 (411)
T ss_dssp             CCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTBTTBCCC-----TTTT-TCSEEECCSTTTTCCCSSEEEE
T ss_pred             CCeEEEEeCCCCCcceeccHHHHHHHHHHcCCEEEEECCcccCCcccc-----hhcc-CCcEEEecCccccCCCCceEEE
Confidence            356788889999999999999999999999999999999998776554     2222 4999999999999999999999


Q ss_pred             EeeCcccccccccC--------------------CCCccCCC-------CceecCCC-C-CChHHHHHHHHHhCHHHHHH
Q 048438           84 WATNPEYLKNKATE--------------------SKPVVDYK-------DWQITLSR-S-FRSLKLWFVIRNYGMENLRH  134 (239)
Q Consensus        84 ~~~~~~~l~~~~~~--------------------~~~~~~~~-------~~~~~~~~-~-~~~~~~~~~l~~~g~~g~~~  134 (239)
                      ++++ +.+......                    ...+.+..       ......+. . .....+..+++.+..+++++
T Consensus       212 ~~~~-~~~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~  290 (411)
T 3nnk_A          212 TLSA-RMEEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDY  290 (411)
T ss_dssp             EECH-HHHHHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHH
T ss_pred             EECH-HHHHHHhhcccccccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHH
Confidence            9854 222111000                    00000000       00001111 1 11233445565555556788


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCeEEEcCCC---eeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhc-
Q 048438          135 FLRSHVNMARLFERLVSGDKRFEVVFPCH---FAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINAS-  210 (239)
Q Consensus       135 ~~~~~~~la~~l~~~l~~~~g~~~~~~~~---~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-  210 (239)
                      +.++..++++++.+.|++. |++++.++.   .++++|.++...                +       ...+.+.|.++ 
T Consensus       291 ~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~----------------~-------~~~l~~~l~~~~  346 (411)
T 3nnk_A          291 GIARHKLHGDALVKGIQAM-GLETFGDLKHKMNNVLGVVIPQGI----------------N-------GDQARKLMLEDF  346 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHT-TCCBCSCGGGBCSSEEEEECCTTC----------------C-------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHc-CCEeCCCcccccccEEEEECCCCC----------------C-------HHHHHHHHHHhc
Confidence            8889999999999999986 888775542   578888885321                0       12556667666 


Q ss_pred             CcEEEEEEEECCEeEEEEEecCCCCCcC
Q 048438          211 GKAYMTNVVLGGIYAIRFATGATLTEER  238 (239)
Q Consensus       211 g~~~~~~~~~~g~~~lR~~~~~~~t~~~  238 (239)
                      |..........+..++|++++.+.+++|
T Consensus       347 gi~v~~g~~~~~~~~iRi~~~~~~~~~~  374 (411)
T 3nnk_A          347 GIEIGTSFGPLHGKVWRIGTMGYNARKD  374 (411)
T ss_dssp             SEEEEECCGGGTTTEEEEECCGGGCSHH
T ss_pred             CeEEeCccCCCCCCEEEEeCccCcCCHH
Confidence            5554432222234689999867665443

>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.79  E-value=7.1e-20  Score=156.55  Aligned_cols=193  Identities=10%  Similarity=0.046  Sum_probs=127.6

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLW   84 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~   84 (239)
                      +.+|.+++.+|.+|++.|.     +++ +|+++|||++|+.+.++++     ++   .+|++++++|||+ +|.|+|++|
T Consensus       141 t~lv~~~~~e~~tG~~~~~-----i~~-~~~~~~vD~~q~~g~~~id-----~~---~~d~~~~s~~K~~-gp~G~g~l~  205 (361)
T 3m5u_A          141 ADYAYICSNNTIYGTQYQN-----YPK-TKTPLIVDASSDFFSRKVD-----FS---NIALFYGGVQKNA-GISGLSCIF  205 (361)
T ss_dssp             SSEEEEESEETTTTEECSS-----CCC-CSSCEEEECGGGTTSSCCC-----CT---TEEEEEEETTTTS-SCTTCEEEE
T ss_pred             CCEEEEeCCCCCcceeCCc-----ccc-cCCEEEEEcccccCCCCCC-----cc---cCCEEEEechhcc-CCCccEEEE
Confidence            4578889999999998662     334 4999999999999999987     44   3899999999999 599999999


Q ss_pred             eeCccccccccc-CCCCccCCCCceecC---CCC--CChHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHhCCCCe-
Q 048438           85 ATNPEYLKNKAT-ESKPVVDYKDWQITL---SRS--FRSLKLWFVIRNYGME-NLRHFLRSHVNMARLFERLVSGDKRF-  156 (239)
Q Consensus        85 ~~~~~~l~~~~~-~~~~~~~~~~~~~~~---~~~--~~~~~~~~~l~~~g~~-g~~~~~~~~~~la~~l~~~l~~~~g~-  156 (239)
                      +++. .+....+ ..+.+.++....-..   +++  ...+.+..+++.+... |++++.++..++++++++.|++++|+ 
T Consensus       206 ~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~~  284 (361)
T 3m5u_A          206 IRKD-MLERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLSNGFY  284 (361)
T ss_dssp             EEHH-HHHHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTSTTSE
T ss_pred             EcHH-HHhhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCee
Confidence            9753 3221111 011122111000011   121  1234555667766555 78888899999999999999998776 


Q ss_pred             EEEcCC--C-eeEEEEEEcC-CCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecC
Q 048438          157 EVVFPC--H-FAVVCFRVSP-LPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGA  232 (239)
Q Consensus       157 ~~~~~~--~-~~iv~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~  232 (239)
                      +++.++  + .++++|.+++ .+.                    +   ..+...|.++|......  ......+|+++++
T Consensus       285 ~~~~~~~~rs~~ivsf~~~~~~~~--------------------~---~~~~~~L~~~gI~~~~g--~~~~g~iRiS~~~  339 (361)
T 3m5u_A          285 KGHADKKDRSLMNVSFNIAKNKDL--------------------E---PLFVKEAEEAGMIGLKG--HRILGGIRASIYN  339 (361)
T ss_dssp             EESSCGGGBCSSEEEEEESSCTTH--------------------H---HHHHHHHHHTTEECCBC--CTTTCSEEEECCT
T ss_pred             eccCCHHHcCCeEEEEECCCchhh--------------------h---HHHHHHHHHCCCEEecC--CCccCeEEEEccC
Confidence            665432  2 3589999986 221                    1   24555666666553321  1112459999999


Q ss_pred             CCCCcC
Q 048438          233 TLTEER  238 (239)
Q Consensus       233 ~~t~~~  238 (239)
                      ++|.+|
T Consensus       340 ~~t~ed  345 (361)
T 3m5u_A          340 ALNLDQ  345 (361)
T ss_dssp             TSCHHH
T ss_pred             CCCHHH
Confidence            988764

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=99.79  E-value=2.5e-19  Score=155.00  Aligned_cols=203  Identities=13%  Similarity=0.061  Sum_probs=135.5

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLW   84 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~   84 (239)
                      +.+|++++.+|.+|.+.|+++|.++|++||+++|+|++|+.+..+.+     .... ++|++++++|||+++|.|+|+++
T Consensus       137 ~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~-----~~~~-~~d~~~~s~~K~l~g~~g~g~~~  210 (416)
T 3isl_A          137 PKIVAMVHGETSTGRIHPLKAIGEACRTEDALFIVDAVATIGGCEVK-----VDEW-KIDAAIGGTQKCLSVPSGMAPIT  210 (416)
T ss_dssp             CSEEEEESEETTTTEECCCHHHHHHHHHTTCEEEEECTTTTTTSCCC-----TTTT-TCSEEECCSSSTTCCCSSEEEEE
T ss_pred             CcEEEEEccCCCCceecCHHHHHHHHHHcCCEEEEECCccccCCCcc-----hhhc-CCCEEEecCccccCCCCCeEEEE
Confidence            56788899999999999999999999999999999999998776554     2222 49999999999999999999998


Q ss_pred             eeCccccccccc----------------------CCCCccCCC-------CceecCCCC--CChHHHHHHHHHhCHHHHH
Q 048438           85 ATNPEYLKNKAT----------------------ESKPVVDYK-------DWQITLSRS--FRSLKLWFVIRNYGMENLR  133 (239)
Q Consensus        85 ~~~~~~l~~~~~----------------------~~~~~~~~~-------~~~~~~~~~--~~~~~~~~~l~~~g~~g~~  133 (239)
                      +++ +.+.....                      ....+.+..       ......+..  .....+..+++.+...+++
T Consensus       211 ~~~-~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~  289 (416)
T 3isl_A          211 YNE-RVADVIAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLE  289 (416)
T ss_dssp             ECH-HHHHHHHTC------------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHH
T ss_pred             ECH-HHHHHhhccccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHH
Confidence            854 22211110                      000000000       001111111  1123444556555555678


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCeEEEcCCC---eeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhc
Q 048438          134 HFLRSHVNMARLFERLVSGDKRFEVVFPCH---FAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINAS  210 (239)
Q Consensus       134 ~~~~~~~~la~~l~~~l~~~~g~~~~~~~~---~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  210 (239)
                      +..++..++++++.+.|++. |++++.++.   .++++|.++...                +       ...+.+.|.++
T Consensus       290 ~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~----------------~-------~~~l~~~L~~~  345 (416)
T 3isl_A          290 TRFERHRHHEAALAAGIKAM-GLRLFGDDSCKMPVVTCVEIPGGI----------------D-------GESVRDMLLAQ  345 (416)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT-TCCBCSCGGGBCTTEEEEECCTTC----------------C-------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHc-CCEeccCccccCCcEEEEeCCCCC----------------C-------HHHHHHHHHHh
Confidence            88899999999999999985 888776543   468889885321                0       12566667666


Q ss_pred             -CcEEEEEEEECCEeEEEEEecCCCCCcC
Q 048438          211 -GKAYMTNVVLGGIYAIRFATGATLTEER  238 (239)
Q Consensus       211 -g~~~~~~~~~~g~~~lR~~~~~~~t~~~  238 (239)
                       |..........+..++|++++.++|++|
T Consensus       346 ~gi~v~~g~~~~~~~~iRi~~~~~~~~~e  374 (416)
T 3isl_A          346 FGIEIASSFGPLAGKIWRIGTMGYSCRKE  374 (416)
T ss_dssp             HCEECBCCCSTTTTTEEEEECCGGGCSHH
T ss_pred             CCEEEecCCCCCCCCEEEEecccCCCcHH
Confidence             5443322222345689999988887765

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=99.78  E-value=3.8e-19  Score=150.23  Aligned_cols=204  Identities=14%  Similarity=0.041  Sum_probs=132.9

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL   83 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l   83 (239)
                      .|.+|++++.+|.+|.+.|+++|.++|++||+++|+|++|+.+..+.+     +..+ ++|++++++|||+++|.|+|++
T Consensus       124 ~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~D~a~~~~~~~~~-----~~~~-~~d~~~~s~~K~~~~~~g~G~~  197 (353)
T 2yrr_A          124 RYRMVALVHGETSTGVLNPAEAIGALAKEAGALFFLDAVTTLGMLPFS-----MRAM-GVDYAFTGSQKCLSAPPGLAPI  197 (353)
T ss_dssp             CCSEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCC-----HHHH-TCSEEECCTTSTTCCCSSCEEE
T ss_pred             CCCEEEEEccCCCcceecCHHHHHHHHHHcCCeEEEEcCccccccccc-----cccc-CceEEEecCcccccCCCceEEE
Confidence            356788899999999999999999999999999999999987655432     2222 3899999999999999999999


Q ss_pred             EeeCcccccccccCCCCccCCC-------CceecCCCCC-ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 048438           84 WATNPEYLKNKATESKPVVDYK-------DWQITLSRSF-RSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKR  155 (239)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~~~-------~~~~~~~~~~-~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g  155 (239)
                      ++++ +.+.........+.+..       .....++... ....+..+++.+...+++++.++..++++++.+.|++. |
T Consensus       198 ~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g  275 (353)
T 2yrr_A          198 AASL-EARKAFTGKRGWYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKAR-G  275 (353)
T ss_dssp             EECH-HHHHHCCCCSCSTTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             EECH-HHHHHhccCCCccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC-C
Confidence            8854 33322110000000000       0001111111 11333445555544557788888999999999999987 9


Q ss_pred             eEEEcCC--CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCC
Q 048438          156 FEVVFPC--HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGAT  233 (239)
Q Consensus       156 ~~~~~~~--~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~  233 (239)
                      ++++.++  ...+++|+++...                +       ...+.+.|.++|..+.......+..++|++++..
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~----------------~-------~~~~~~~l~~~gi~v~~g~~~~~~~~iRi~~~~~  332 (353)
T 2yrr_A          276 FRPYPKASPLPTVLVVRPPEGV----------------D-------ADRLVRALYAEGVAVAGGIGPTRGQVLRLGLMGE  332 (353)
T ss_dssp             CEESCSSSBCTTEEEEECCTTC----------------C-------HHHHHHHHHHTTEECEECCGGGTTTCEEEECSGG
T ss_pred             CccccCccCCCeEEEEECCCCC----------------C-------HHHHHHHHHHCCEEEeCCccccCCCeEEEecCcc
Confidence            9887654  3457778875211                0       1256667777765544332222346899998777


Q ss_pred             CCCcC
Q 048438          234 LTEER  238 (239)
Q Consensus       234 ~t~~~  238 (239)
                      .|++|
T Consensus       333 ~~~~~  337 (353)
T 2yrr_A          333 GARRE  337 (353)
T ss_dssp             GSCHH
T ss_pred             CCHHH
Confidence            77654

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=99.78  E-value=5e-18  Score=145.44  Aligned_cols=201  Identities=13%  Similarity=0.118  Sum_probs=133.8

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHH----HhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAK----QFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD   79 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~----~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g   79 (239)
                      .+.+|+++..+|.+|.+.|+++|.++|+    ++|+++++|++|+.+..+.+     +... .+|+++.++|||+++|.|
T Consensus       154 ~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~li~Dea~~~g~~~~~-----~~~~-~~d~~~~s~~K~~~~~~g  227 (390)
T 1elu_A          154 KTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLD-----FSRL-EVDYYAFTGHKWFAGPAG  227 (390)
T ss_dssp             TEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCC-----TTTS-CCSEEEEESSSTTCCCTT
T ss_pred             CceEEEEeccccCCceecCHHHHHHHHhhhhhhcCcEEEEEcccccCCcCCC-----hhhc-CCCEEEccccccccCCCc
Confidence            3567888999999999999999999999    99999999999997765443     2222 489999999999999999


Q ss_pred             ceEEEeeCcccccccccCC--CCc----cCCCCc-------eecCCCC--CChHHHHHHHHHhCHHH-HHHHHHHHHHHH
Q 048438           80 CCCLWATNPEYLKNKATES--KPV----VDYKDW-------QITLSRS--FRSLKLWFVIRNYGMEN-LRHFLRSHVNMA  143 (239)
Q Consensus        80 ~g~l~~~~~~~l~~~~~~~--~~~----~~~~~~-------~~~~~~~--~~~~~~~~~l~~~g~~g-~~~~~~~~~~la  143 (239)
                      +|++++++ +.+.......  ...    ++...+       .+..+..  .....+..+++.+...+ ++++.++..+++
T Consensus       228 ~G~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~  306 (390)
T 1elu_A          228 VGGLYIHG-DCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRS  306 (390)
T ss_dssp             CEEEEECT-TTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred             eEEEEECH-HhHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999864 3333221100  000    000001       1111111  11123334555543444 777888888999


Q ss_pred             HHHHHHHhCCCCeEEEcC--CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEEC
Q 048438          144 RLFERLVSGDKRFEVVFP--CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLG  221 (239)
Q Consensus       144 ~~l~~~l~~~~g~~~~~~--~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~  221 (239)
                      +++.+.|++++|++++.+  ...++++|.++...                +       ...+.+.|.++|.......   
T Consensus       307 ~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~----------------~-------~~~~~~~l~~~gi~v~~~~---  360 (390)
T 1elu_A          307 EFLWRGLNQLPHVHCLATSAPQAGLVSFTVDSPL----------------G-------HRAIVQKLEEQRIYLRTIA---  360 (390)
T ss_dssp             HHHHHHHHHSTTEEESCSSCCSSSEEEEEECSSS----------------C-------HHHHHHHHHHTTEECEEET---
T ss_pred             HHHHHHHHhcCCcEEecCccccccEEEEEcCCCC----------------C-------HHHHHHHHHHCCEEEEecC---
Confidence            999999999889998764  36789999885311                0       1256667766665544322   


Q ss_pred             CEeEEEEEecCCCCCc
Q 048438          222 GIYAIRFATGATLTEE  237 (239)
Q Consensus       222 g~~~lR~~~~~~~t~~  237 (239)
                      +..++|++++...|.+
T Consensus       361 ~~~~iRis~~~~~~~~  376 (390)
T 1elu_A          361 DPDCIRACCHYITDEE  376 (390)
T ss_dssp             TTTEEEEECCTTCCHH
T ss_pred             CCCeEEEecccCCCHH
Confidence            4468999986666554

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.77  E-value=8.5e-19  Score=148.28  Aligned_cols=200  Identities=13%  Similarity=-0.004  Sum_probs=131.3

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHh--CCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQF--GIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCC   82 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~--gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~   82 (239)
                      +.+|+.++.+|.+|.+.|+++|.++|++|  |+++|+|++|+.+..+++     .... ++|++++++|||+++|.|+|+
T Consensus       122 ~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~-----~~~~-~~d~~~~s~~K~~~~~~g~G~  195 (352)
T 1iug_A          122 YAGLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVGEVA-----LEAM-GVDAAASGSQKGLMCPPGLGF  195 (352)
T ss_dssp             CSEEEEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTTBCCC-----SGGG-TCSEEEEESSSTTCCCSCEEE
T ss_pred             CcEEEEEEecCCcceecCHHHHHHHHHhhCCCCEEEEECCccccCccee-----cccc-CeeEEEecCcccccCCCceeE
Confidence            45788889999999999999999999999  999999999987765443     2222 389999999999999999999


Q ss_pred             EEeeCcccccccccCCCCccCCC-------CceecCCCCC-ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 048438           83 LWATNPEYLKNKATESKPVVDYK-------DWQITLSRSF-RSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK  154 (239)
Q Consensus        83 l~~~~~~~l~~~~~~~~~~~~~~-------~~~~~~~~~~-~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~  154 (239)
                      +++++ +.+..... ...+.+..       ......+... ....+..+++.+... ++++.++..++++++.+.|+++ 
T Consensus       196 ~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~l~~~L~~~-  271 (352)
T 1iug_A          196 VALSP-RALERLKP-RGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPR-LEEHLALKAWQNALLYGVGEEG-  271 (352)
T ss_dssp             EEECH-HHHHTCCC-CSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGG-HHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             EEECH-HHHHHhhC-CCceeeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHC-
Confidence            99854 33322110 00011100       0000011111 112333455544333 6778888889999999999987 


Q ss_pred             CeEEEcCC-CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCC
Q 048438          155 RFEVVFPC-HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGAT  233 (239)
Q Consensus       155 g~~~~~~~-~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~  233 (239)
                      |++++.+. ..+++.|++++..                +       ...+.++|.++|..........+..++|++++..
T Consensus       272 g~~~~~~~~~~~~~~~~~~~~~----------------~-------~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~  328 (352)
T 1iug_A          272 GLRPVPKRFSPAVAAFYLPEGV----------------P-------YARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMGA  328 (352)
T ss_dssp             TCEESCSSBCTTCEEEECCTTC----------------C-------HHHHHHHHHTTTEECEECCGGGTTTEEEECCCSS
T ss_pred             CCcccccccCCeEEEEEcCCCC----------------C-------HHHHHHHHHHCCEEEEeCCCccCCCEEEEEcccc
Confidence            89887654 5678888886311                0       1256677777765444332112346899998876


Q ss_pred             CCCc
Q 048438          234 LTEE  237 (239)
Q Consensus       234 ~t~~  237 (239)
                      +|.+
T Consensus       329 ~~~~  332 (352)
T 1iug_A          329 YDRY  332 (352)
T ss_dssp             CCHH
T ss_pred             CCHH
Confidence            6654

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=99.77  E-value=5.3e-19  Score=152.01  Aligned_cols=200  Identities=11%  Similarity=0.069  Sum_probs=129.7

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccce
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCC   81 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g   81 (239)
                      +-+|++++.+|.+|.+.|   +++|+++|++||+++|+|++|+ |..+++     ...+ ++|++++++|||+++|.|+|
T Consensus       136 ~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~-g~~~~~-----~~~~-~~d~~~~s~~K~l~~~~g~g  208 (379)
T 3ke3_A          136 SAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS-GCVWLD-----MKEL-GIDVLISAPQKGWSSTPCAG  208 (379)
T ss_dssp             CSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC-TTCCCC-----HHHH-TCSEEEECTTTTTCSCCCEE
T ss_pred             CcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEeccc-CCcccc-----cccc-CCCEEEecchhhcCCCCceE
Confidence            457888999999999999   9999999999999999999998 655554     2222 39999999999999999999


Q ss_pred             EEEeeCccccccccc--CCCCccCCCCc-----eec-CCCCC-------ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Q 048438           82 CLWATNPEYLKNKAT--ESKPVVDYKDW-----QIT-LSRSF-------RSLKLWFVIRNYGMENLRHFLRSHVNMARLF  146 (239)
Q Consensus        82 ~l~~~~~~~l~~~~~--~~~~~~~~~~~-----~~~-~~~~~-------~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l  146 (239)
                      ++++++ +.+.....  ..+.+.+...|     .++ +++.+       ...++..+++.+..++++++.++..++++++
T Consensus       209 ~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l  287 (379)
T 3ke3_A          209 LVMLSA-AAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRV  287 (379)
T ss_dssp             EEEECH-HHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             EEEECH-HHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Confidence            999854 33221111  01111111001     011 11111       1133445566665667888889999999999


Q ss_pred             HHHHhCCCCeEEEcCC--CeeEEE-EEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEE----
Q 048438          147 ERLVSGDKRFEVVFPC--HFAVVC-FRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVV----  219 (239)
Q Consensus       147 ~~~l~~~~g~~~~~~~--~~~iv~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~----  219 (239)
                      ++.|+++ |++++.++  .++++. |..++.                       ..  ...+.|.++|....+...    
T Consensus       288 ~~~l~~~-g~~~~~~~~~~~~~i~~~~~~~~-----------------------~~--~~~~~L~~~Gi~v~~g~~~~~~  341 (379)
T 3ke3_A          288 RKVLTDK-GIESVAAEGFEAPGVVVSYTERD-----------------------DM--HKGSAFAEAGLQIAAGVPLKVG  341 (379)
T ss_dssp             HHHHHHT-TCCBSBCTTCBCSSEEEEECSCH-----------------------HH--HSSHHHHHTTCCCEECCCCSSC
T ss_pred             HHHHHHc-CCEecCCccccCceEEEEccCCc-----------------------ch--HHHHHHHHCCeEEeCCcccccc
Confidence            9999987 88877654  245443 333221                       11  123456667765443221    


Q ss_pred             -ECCEeEEEEEecCCCCCcC
Q 048438          220 -LGGIYAIRFATGATLTEER  238 (239)
Q Consensus       220 -~~g~~~lR~~~~~~~t~~~  238 (239)
                       ..+...+|++++..+|.+|
T Consensus       342 ~~~~~~~lRis~~~~~t~~d  361 (379)
T 3ke3_A          342 EPDNFKTFRLGLFGLDKLTD  361 (379)
T ss_dssp             CCTTCCEEEEECCSHHHHTC
T ss_pred             ccCcCCEEEEeCCcCCCHHH
Confidence             1125689999988776654

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=99.77  E-value=6.9e-18  Score=145.21  Aligned_cols=203  Identities=15%  Similarity=0.145  Sum_probs=132.9

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL   83 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l   83 (239)
                      .+.+|+++..+|.+|.+.|+++|.++|++||+++++|++|+.+..+++     ...+ ++|+++.++||++ +|.|+|++
T Consensus       164 ~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~g~~~~~-----~~~~-~~d~~~~s~~K~~-g~~G~G~~  236 (406)
T 1kmj_A          164 KTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVD-----VQAL-DCDFYVFSGHKLY-GPTGIGIL  236 (406)
T ss_dssp             TEEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCC-----HHHH-TCSEEEEEGGGTT-SCTTCEEE
T ss_pred             CCeEEEEeCCCccccCcCCHHHHHHHHHHcCCEEEEEchhhcCCCCCc-----cccc-CCCEEEEEchhcc-CCCCcEEE
Confidence            467888899999999999999999999999999999999998765443     2222 3899999999987 78889999


Q ss_pred             EeeCcccccccccC--CCCccC-----------CCCceecCCCC-CC-hHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Q 048438           84 WATNPEYLKNKATE--SKPVVD-----------YKDWQITLSRS-FR-SLKLWFVIRNYGMENLRHFLRSHVNMARLFER  148 (239)
Q Consensus        84 ~~~~~~~l~~~~~~--~~~~~~-----------~~~~~~~~~~~-~~-~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~  148 (239)
                      +++ ++.+......  .+...+           ...+.+..+.. .. .+++..+++.+...++++..++..++++++.+
T Consensus       237 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~  315 (406)
T 1kmj_A          237 YVK-EALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALS  315 (406)
T ss_dssp             EEC-HHHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             EEe-HHHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence            985 3333222110  000000           00011111221 11 12232445555444666777888899999999


Q ss_pred             HHhCCCCeEEEcCC-CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEE--------
Q 048438          149 LVSGDKRFEVVFPC-HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVV--------  219 (239)
Q Consensus       149 ~l~~~~g~~~~~~~-~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~--------  219 (239)
                      .|++++|++++.+. ..++++|.+++..                        ...+.+.|.++|........        
T Consensus       316 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~l~~~gi~v~~g~~~~~~~~~~  371 (406)
T 1kmj_A          316 QLESVPDLTLYGPQNRLGVIAFNLGKHH------------------------AYDVGSFLDNYGIAVRTGHHCAMPLMAY  371 (406)
T ss_dssp             HHTTSTTEEEESCTTCCSEEEEEETTCC------------------------HHHHHHHHHHTTEECEEECTTCHHHHHH
T ss_pred             HHhcCCCeEEecCCCcCCEEEEEECCCC------------------------HHHHHHHHhhCCcEEEeccccchHHHHh
Confidence            99998899988653 6789999875321                        11455667667665443321        


Q ss_pred             ECCEeEEEEEecCCCCCcC
Q 048438          220 LGGIYAIRFATGATLTEER  238 (239)
Q Consensus       220 ~~g~~~lR~~~~~~~t~~~  238 (239)
                      .....++|++++..+|.+|
T Consensus       372 ~g~~~~iRis~~~~~t~~~  390 (406)
T 1kmj_A          372 YNVPAMCRASLAMYNTHEE  390 (406)
T ss_dssp             TTCSCEEEEECCTTCCHHH
T ss_pred             cCCCCeEEEEeecCCCHHH
Confidence            1124789999887766553

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=99.76  E-value=4.1e-18  Score=145.61  Aligned_cols=201  Identities=14%  Similarity=0.101  Sum_probs=135.4

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL   83 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l   83 (239)
                      .+.+|+++..+|.+|.+.|+++|.++|++||+++++|++|+.+..+.+     .... ++|++++++||++++|.|+|++
T Consensus       127 ~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~-----~~~~-~~d~~~~s~~K~~~~~~g~g~~  200 (384)
T 3zrp_A          127 EYKLVALTHVETSTGVREPVKDVINKIRKYVELIVVDGVSSVGAEEVK-----AEEW-NVDVYLTASQKALGSAAGLGLL  200 (384)
T ss_dssp             CEEEEEEESEETTTTEECCHHHHHHHHGGGEEEEEEECTTTTTTSCCC-----TTTT-TCSEEEEETTSTTCCCSSEEEE
T ss_pred             CCcEEEEeCCCCCCceECcHHHHHHHHHhcCCEEEEECcccccCcccc-----cccc-CCCEEEecCcccccCCCceEEE
Confidence            367888899999999999999999999999999999999998776544     2222 4899999999999999999999


Q ss_pred             EeeCccccccc-cc--CCCCccCCCCce-----ec--CCCCC------ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Q 048438           84 WATNPEYLKNK-AT--ESKPVVDYKDWQ-----IT--LSRSF------RSLKLWFVIRNYGMENLRHFLRSHVNMARLFE  147 (239)
Q Consensus        84 ~~~~~~~l~~~-~~--~~~~~~~~~~~~-----~~--~~~~~------~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~  147 (239)
                      ++++ +.+... ..  ....+.+...+.     ++  ...++      ....+..+++.+...+++++.++..++++++.
T Consensus       201 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~  279 (384)
T 3zrp_A          201 LLSP-KALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIR  279 (384)
T ss_dssp             EECH-HHHHHHHHCCCSCCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             EECH-HHHHHhcCCCCCCcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            8854 332222 10  000111100000     00  11111      22334455665555567888888999999999


Q ss_pred             HHHhCCCCeEEEcCC----CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCE
Q 048438          148 RLVSGDKRFEVVFPC----HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGI  223 (239)
Q Consensus       148 ~~l~~~~g~~~~~~~----~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~  223 (239)
                      +.|+++ |++++.++    ..++++|.+++..                        ...+.+.|.++|........ ...
T Consensus       280 ~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~l~~~gi~v~~g~~-~~~  333 (384)
T 3zrp_A          280 AGLEAL-GLEIVARRPESYSNTVTGVILKVAD------------------------PQKVLAGTVNEGVEFAPGVH-PAF  333 (384)
T ss_dssp             HHHHHT-TCCBSCSSGGGBCSSEEEEECSSSC------------------------HHHHHHHHHTTTCCCEECCC-TTC
T ss_pred             HHHHHC-CCeEccCcccccCccEEEEECCCCC------------------------HHHHHHHHHHCCEEEecCCC-CCc
Confidence            999998 88877654    3567888886521                        12566777777655443211 111


Q ss_pred             eEEEEEecCCCCCc
Q 048438          224 YAIRFATGATLTEE  237 (239)
Q Consensus       224 ~~lR~~~~~~~t~~  237 (239)
                      .++|+++...+|.+
T Consensus       334 ~~iRi~~~~~~~~e  347 (384)
T 3zrp_A          334 KYFRIGHMGWVTPN  347 (384)
T ss_dssp             CEEEEECCSSCCHH
T ss_pred             CEEEEeccccCCHH
Confidence            78999988876654

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=99.76  E-value=6.8e-18  Score=146.13  Aligned_cols=192  Identities=12%  Similarity=0.119  Sum_probs=128.6

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc-eE
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC-CC   82 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~-g~   82 (239)
                      .+.+|++++.+|.+|.+.|+++|.++|++||+++|+|+||+.+..+.+     +..+ ++|++++++||+++++.++ |+
T Consensus       165 ~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~-----~~~~-~~d~~~~s~~K~l~~g~~~~g~  238 (416)
T 1qz9_A          165 DTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVD-----LHQA-GADYAIGCTYKYLNGGPGSQAF  238 (416)
T ss_dssp             TEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCC-----HHHH-TCSEEEECSSSTTCCCTTCCCE
T ss_pred             CceEEEEeccccCcccccCHHHHHHHHHHcCCEEEEEccccccCcCCC-----hhhc-CCCEEEecCcccCCCCCCCeEE
Confidence            467889999999999999999999999999999999999997765443     2222 3899999999999877787 99


Q ss_pred             EEeeCcccccccccCCCC---c---cCCC-Cc-------eecCCCC-C-ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Q 048438           83 LWATNPEYLKNKATESKP---V---VDYK-DW-------QITLSRS-F-RSLKLWFVIRNYGMENLRHFLRSHVNMARLF  146 (239)
Q Consensus        83 l~~~~~~~l~~~~~~~~~---~---~~~~-~~-------~~~~~~~-~-~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l  146 (239)
                      +++++ +++........+   .   ++.. .+       ....+.. . ..+.+..+++.+..+++++..++..++++++
T Consensus       239 l~~~~-~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l  317 (416)
T 1qz9_A          239 VWVSP-QLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLF  317 (416)
T ss_dssp             EEECT-TTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred             EEECH-HHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            98864 332222110000   0   0000 01       1111111 1 1233445666655456778888888999999


Q ss_pred             HHHHhCC-C--CeEEEcCC----CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEE
Q 048438          147 ERLVSGD-K--RFEVVFPC----HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVV  219 (239)
Q Consensus       147 ~~~l~~~-~--g~~~~~~~----~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~  219 (239)
                      .+.|++. +  |++++.+.    ..++++|.+++                          ...+.+.|.++|.. +.   
T Consensus       318 ~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~l~~~l~~~gi~-~~---  367 (416)
T 1qz9_A          318 IELVEQRCAAHELTLVTPREHAKRGSHVSFEHPE--------------------------GYAVIQALIDRGVI-GD---  367 (416)
T ss_dssp             HHHHHHHHTTSCCEECSCSSGGGBCSEEEEECTT--------------------------HHHHHHHHHTTTEE-CE---
T ss_pred             HHHHHhhccCCCeEEeCCCCHHHcCCEEEEecCC--------------------------HHHHHHHHHhCCcE-ec---
Confidence            9999885 6  89887653    36788887642                          12566677777644 32   


Q ss_pred             ECCEeEEEEEecC
Q 048438          220 LGGIYAIRFATGA  232 (239)
Q Consensus       220 ~~g~~~lR~~~~~  232 (239)
                      ..+..++|+++..
T Consensus       368 ~~~~~~lRis~~~  380 (416)
T 1qz9_A          368 YREPRIMRFGFTP  380 (416)
T ss_dssp             EETTTEEEEECCT
T ss_pred             cCCCCeEEEeCcc
Confidence            2355689999875

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=99.76  E-value=2.1e-18  Score=147.56  Aligned_cols=203  Identities=15%  Similarity=0.069  Sum_probs=133.1

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL   83 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l   83 (239)
                      .+.+|++++.+|.+|.+.|+++|.++|++||+++++|++|+.+..+.+     +... ++|++++++||++++|.|+|++
T Consensus       146 ~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~-----~~~~-~~di~~~s~sK~~~~~~g~G~~  219 (386)
T 2dr1_A          146 DVEAVTITYNETSTGVLNPLPELAKVAKEHDKLVFVDAVSAMGGADIK-----FDKW-GLDVVFSSSQKAFGVPPGLAIG  219 (386)
T ss_dssp             TCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTBTTBCCC-----TTTT-TCSEEEEETTSTTCCCSSCEEE
T ss_pred             CCcEEEEEeecCCcchhCCHHHHHHHHHHcCCeEEEEccccccCcccc-----cccc-CCcEEEEeccccccCCCceEEE
Confidence            466788888899999999999999999999999999999998765443     2222 4899999999999999889999


Q ss_pred             EeeCccccccccc--CCCCccCCC----Cc---ee-cCCCC-CChHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHh
Q 048438           84 WATNPEYLKNKAT--ESKPVVDYK----DW---QI-TLSRS-FRSLKLWFVIRNYGME-NLRHFLRSHVNMARLFERLVS  151 (239)
Q Consensus        84 ~~~~~~~l~~~~~--~~~~~~~~~----~~---~~-~~~~~-~~~~~~~~~l~~~g~~-g~~~~~~~~~~la~~l~~~l~  151 (239)
                      ++++ +.+.....  ..+.+.+..    ..   .. ..+.. .....+..+++.+... +++++.++..++++++.+.|+
T Consensus       220 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~  298 (386)
T 2dr1_A          220 AFSE-RFLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVR  298 (386)
T ss_dssp             EECH-HHHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EECH-HHHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence            9854 33322210  000111100    00   00 11111 1123344455554333 567788888899999999999


Q ss_pred             CCCCeEEEcCC---CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEE
Q 048438          152 GDKRFEVVFPC---HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRF  228 (239)
Q Consensus       152 ~~~g~~~~~~~---~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~  228 (239)
                      +. |+++..+.   ..++++|.++...                +       ...+.++|.++|..........+..++|+
T Consensus       299 ~~-g~~~~~~~~~~~~~~~~~~~~~~~----------------~-------~~~~~~~l~~~gi~v~~~~~~~~~~~iRi  354 (386)
T 2dr1_A          299 EI-GLDILAEPGHESPTITAVLTPPGI----------------K-------GDEVYEAMRKRGFELAKGYGSVKEKTFRI  354 (386)
T ss_dssp             HT-TCCBSSCTTCBCSSEEEEECCTTC----------------C-------HHHHHHHHHHTTEECEECCGGGTTTEEEE
T ss_pred             Hc-CCeeCcCccccCCceEEEEcCCCC----------------C-------HHHHHHHHHHCCeEEecCccccCCCEEEE
Confidence            87 88876543   3678888886321                0       12566777777654443222223468999


Q ss_pred             EecCCCCCc
Q 048438          229 ATGATLTEE  237 (239)
Q Consensus       229 ~~~~~~t~~  237 (239)
                      +++..+|.+
T Consensus       355 ~~~~~~~~~  363 (386)
T 2dr1_A          355 GHMGYMKFE  363 (386)
T ss_dssp             ECCSSCCHH
T ss_pred             ECCCCCCHH
Confidence            988766654

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=99.76  E-value=1.8e-18  Score=148.33  Aligned_cols=202  Identities=10%  Similarity=0.058  Sum_probs=130.0

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL   83 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l   83 (239)
                      .+.+|+++..+|.+|.+.|+++|.++|++||+++++|++|+.+..+.+     .... ++|++++++||++++|.|+|++
T Consensus       148 ~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~-----~~~~-~~d~~~~s~sK~~~~~~g~g~~  221 (393)
T 3kgw_A          148 KPVLLFLVHGESSTGVVQPLDGFGELCHRYQCLLLVDSVASLGGVPIY-----MDQQ-GIDIMYSSSQKVLNAPPGISLI  221 (393)
T ss_dssp             CCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTTTTSCCC-----TTTT-TCCEEEEESSSTTCCCSSCEEE
T ss_pred             CCcEEEEeccCCcchhhccHHHHHHHHHHcCCEEEEECCccccCcccc-----hhhc-CCCEEEecCcccccCCCceeEE
Confidence            355778888899999999999999999999999999999987655543     2222 4899999999999999999999


Q ss_pred             EeeCccccccccc---CC-CCccCCC---------C-ceecCCC-C-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Q 048438           84 WATNPEYLKNKAT---ES-KPVVDYK---------D-WQITLSR-S-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFE  147 (239)
Q Consensus        84 ~~~~~~~l~~~~~---~~-~~~~~~~---------~-~~~~~~~-~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~  147 (239)
                      ++++ +.+.....   .. ..+.+..         . .....+. . .....+..+++.+..+++++..++..++++++.
T Consensus       222 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~  300 (393)
T 3kgw_A          222 SFND-KAKYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLH  300 (393)
T ss_dssp             EECH-HHHHHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             EECH-HHHHHHhccCCCCCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            9853 32221111   00 0000000         0 0000111 1 112334445555555567888889999999999


Q ss_pred             HHHhCCCCeEEEcCC---C-eeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhc-CcEEEEEEEECC
Q 048438          148 RLVSGDKRFEVVFPC---H-FAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINAS-GKAYMTNVVLGG  222 (239)
Q Consensus       148 ~~l~~~~g~~~~~~~---~-~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~g  222 (239)
                      +.|+++ |++++.+.   . ..+++|.++...                +       ...+.+.|.++ |..+.......+
T Consensus       301 ~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~----------------~-------~~~~~~~l~~~~gi~v~~g~~~~~  356 (393)
T 3kgw_A          301 KHLQEM-GLKFFVKDPEIRLPTITTVTVPAGY----------------N-------WRDIVSYVLDHFSIEISGGLGPTE  356 (393)
T ss_dssp             HHHHHT-TCCBSSSSGGGBCSSEEEEECCTTB----------------C-------HHHHHHHHHHHHCEECBCCCGGGT
T ss_pred             HHHHHc-CCeeccCChhhcCCeEEEEeCCCCC----------------C-------HHHHHHHHHHhCCEEEeCCcccCC
Confidence            999998 88876432   2 356678775321                0       12566677666 554443222224


Q ss_pred             EeEEEEEecCCCCC
Q 048438          223 IYAIRFATGATLTE  236 (239)
Q Consensus       223 ~~~lR~~~~~~~t~  236 (239)
                      ..++|++++.+.++
T Consensus       357 ~~~iRi~~~~~~~~  370 (393)
T 3kgw_A          357 ERVLRIGLLGYNAT  370 (393)
T ss_dssp             TTEEEEECCGGGCC
T ss_pred             CCEEEEEecccCCC
Confidence            56899998666543

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=99.75  E-value=2.6e-18  Score=147.54  Aligned_cols=202  Identities=12%  Similarity=0.067  Sum_probs=130.9

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL   83 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l   83 (239)
                      .|.+|++++.+|.+|.+.|+++|.++|++||+++|+|++|+.+..+.+     +..+ ++|++++++|||+++|.|+|++
T Consensus       134 ~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~-----~~~~-~~d~~~~s~sK~~~~~~g~G~l  207 (392)
T 2z9v_A          134 EITVVSVCHHDTPSGTINPIDAIGALVSAHGAYLIVDAVSSFGGMKTH-----PEDC-KADIYVTGPNKCLGAPPGLTMM  207 (392)
T ss_dssp             TCCEEEEESEEGGGTEECCHHHHHHHHHHTTCEEEEECTTTBTTBSCC-----GGGG-TCSEEEECSSSTTCCCSCCEEE
T ss_pred             CCcEEEEeccCCCCceeccHHHHHHHHHHcCCeEEEEcccccCCcccc-----cccc-cceEEEecCcccccCCCceeEE
Confidence            456788899999999999999999999999999999999997766543     2222 3899999999999999999999


Q ss_pred             EeeCcccccccccC---CC-CccCC----CCc---eecCCC-CC-ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Q 048438           84 WATNPEYLKNKATE---SK-PVVDY----KDW---QITLSR-SF-RSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLV  150 (239)
Q Consensus        84 ~~~~~~~l~~~~~~---~~-~~~~~----~~~---~~~~~~-~~-~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l  150 (239)
                      ++++ +.+......   .+ ...+.    ..+   ....+. .. ..+.+..+++.+...++++..++..++++++.+.|
T Consensus       208 ~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L  286 (392)
T 2z9v_A          208 GVSE-RAWAKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGV  286 (392)
T ss_dssp             EECH-HHHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred             EECH-HHHHHhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            9854 332211100   00 01110    000   011111 11 11233445555444457778888889999999999


Q ss_pred             hCCCCeEEEcCC----CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhc-CcEEEEEEEECCEeE
Q 048438          151 SGDKRFEVVFPC----HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINAS-GKAYMTNVVLGGIYA  225 (239)
Q Consensus       151 ~~~~g~~~~~~~----~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~g~~~  225 (239)
                      +++ |++++.++    ..++++|+++...                +       ...+.+.|.++ |..........+..+
T Consensus       287 ~~~-g~~~~~~~~~~~~~~~~~~~~~~~~----------------~-------~~~l~~~L~~~~gi~v~~g~~~~~~~~  342 (392)
T 2z9v_A          287 TAM-GLSVWAASDSIASPTTTAVRTPDGV----------------D-------EKALRQAARARYGVVFSSGRGETLGKL  342 (392)
T ss_dssp             HHT-TCCBSSSSGGGBCTTEEEEECCTTC----------------C-------HHHHHHHHHHHHCEECEECCGGGTTTE
T ss_pred             HHc-CCeeccCCccccCCceEEEECCCCC----------------C-------HHHHHHHHHhcCCEEEecCCCCCCCCe
Confidence            987 88877633    3578888885311                0       12566677766 655443322224568


Q ss_pred             EEEEecC-CCCC
Q 048438          226 IRFATGA-TLTE  236 (239)
Q Consensus       226 lR~~~~~-~~t~  236 (239)
                      +|++++. .+|.
T Consensus       343 lRi~~~~~~~~~  354 (392)
T 2z9v_A          343 TRIGHMGPTAQP  354 (392)
T ss_dssp             EEEECCGGGCSH
T ss_pred             EEEeCcccccCH
Confidence            9999766 4443

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=99.75  E-value=1.5e-18  Score=149.17  Aligned_cols=203  Identities=13%  Similarity=0.016  Sum_probs=128.9

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLW   84 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~   84 (239)
                      +.+|++++.+|.+|.+.|+++|.++|++||+++|+|++|+.+..+.+     +... ++|++++++|||+++|.|+|+++
T Consensus       145 ~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~-----~~~~-~~d~~~~s~sK~l~g~~G~G~~~  218 (393)
T 2huf_A          145 PSVLFLTQGDSSTGVLQGLEGVGALCHQHNCLLIVDTVASLGGAPMF-----MDRW-EIDAMYTGSQKVLGAPPGITPVS  218 (393)
T ss_dssp             CSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCC-----TTTT-TCSEEECCSSSTTCCCSSCEEEE
T ss_pred             CcEEEEEccCCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCCcc-----hhhc-CccEEEECCCcccccCCCeEEEE
Confidence            45778889999999999999999999999999999999987765443     2222 38999999999999999999998


Q ss_pred             eeCcccccccccC----CCCccC-------CCC---ceecCCC-CC-ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Q 048438           85 ATNPEYLKNKATE----SKPVVD-------YKD---WQITLSR-SF-RSLKLWFVIRNYGMENLRHFLRSHVNMARLFER  148 (239)
Q Consensus        85 ~~~~~~l~~~~~~----~~~~~~-------~~~---~~~~~~~-~~-~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~  148 (239)
                      ++ ++.+......    .+...+       +..   .....+. .. ....+..+++.+..+++++..++..++++++.+
T Consensus       219 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~  297 (393)
T 2huf_A          219 FS-HRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYR  297 (393)
T ss_dssp             EC-HHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             EC-HHHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence            85 3333221110    000000       000   0001111 11 112233355554444577788888899999999


Q ss_pred             HHhCCCCeEEEcCC--Cee-EEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhc-CcEEEEEEEECCEe
Q 048438          149 LVSGDKRFEVVFPC--HFA-VVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINAS-GKAYMTNVVLGGIY  224 (239)
Q Consensus       149 ~l~~~~g~~~~~~~--~~~-iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~g~~  224 (239)
                      .|+++ |++++.++  ..+ +++|+++...                +       ...+.++|.++ |..........+..
T Consensus       298 ~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~----------------~-------~~~~~~~L~~~~gi~v~~g~~~~~~~  353 (393)
T 2huf_A          298 GLQDA-GFELYADPKDRLSTVTTIKVPQGV----------------D-------WLKAAQYAMKTYLVEISGGLGPTAGQ  353 (393)
T ss_dssp             HHHHT-TCCBSSCGGGBCTTEEEEECCTTC----------------C-------HHHHHHHHHHHHCEECBCCCGGGTTT
T ss_pred             HHHHc-CCeeccCccccCCcEEEEEcCCCC----------------C-------HHHHHHHHHHhCCEEEecCcccccCC
Confidence            99987 88876543  234 8888875311                0       12456666654 54433221112356


Q ss_pred             EEEEEecCCCCCcC
Q 048438          225 AIRFATGATLTEER  238 (239)
Q Consensus       225 ~lR~~~~~~~t~~~  238 (239)
                      ++|++++.+++++|
T Consensus       354 ~~Ri~~~~~~~~~e  367 (393)
T 2huf_A          354 VFRIGLMGQNATTE  367 (393)
T ss_dssp             EEEEECCGGGCSHH
T ss_pred             EEEEEcccCcCCHH
Confidence            89999877765443

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=99.75  E-value=1.9e-17  Score=140.41  Aligned_cols=202  Identities=12%  Similarity=0.098  Sum_probs=130.6

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLW   84 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~   84 (239)
                      +.+|+.+..+|.+|.+.|+++|.++|++||+++++|++|+.+..+.+     +... ++|++++++|||+++|.|+|+++
T Consensus       132 ~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~-----~~~~-~~di~~~s~~K~~~~~~g~G~~~  205 (366)
T 1m32_A          132 ISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMD-----IAAL-HIDYLISSANKCIQGVPGFAFVI  205 (366)
T ss_dssp             CCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCC-----TTTT-TCSEEEEESSSTTCCCSSEEEEE
T ss_pred             eEEEEEecccCCcceecCHHHHHHHHHHcCCEEEEECCccccCcCcc-----cccc-CccEEEecCcccccCCCceEEEE
Confidence            55677888889999999999999999999999999999987765443     2222 38999999999998999999999


Q ss_pred             eeCcccccccccC-CCCccCCC-Cce---ec-CCCCC--C---hHHHHHHHHHhCHHH-HHHHHHHHHHHHHHHHHHHhC
Q 048438           85 ATNPEYLKNKATE-SKPVVDYK-DWQ---IT-LSRSF--R---SLKLWFVIRNYGMEN-LRHFLRSHVNMARLFERLVSG  152 (239)
Q Consensus        85 ~~~~~~l~~~~~~-~~~~~~~~-~~~---~~-~~~~~--~---~~~~~~~l~~~g~~g-~~~~~~~~~~la~~l~~~l~~  152 (239)
                      +++ +.+...... .....+.. .+.   .. ..+++  .   ...+..+++.+...+ +++..++..++++++.+.|++
T Consensus       206 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~  284 (366)
T 1m32_A          206 ARE-QKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRA  284 (366)
T ss_dssp             EEH-HHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ECH-HHHHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHH
Confidence            864 333222110 00011000 000   00 11111  1   123344555544444 677888889999999999998


Q ss_pred             CCCeEEEcCC--Cee-EEEEEEcCC-CcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEE
Q 048438          153 DKRFEVVFPC--HFA-VVCFRVSPL-PVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRF  228 (239)
Q Consensus       153 ~~g~~~~~~~--~~~-iv~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~  228 (239)
                      . |++++.++  ..+ ++.|.+++. +.               +       ...+.+.|.++|.. +.+....+..++|+
T Consensus       285 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~-------~~~~~~~l~~~gi~-v~~~~~~~~~~iRi  340 (366)
T 1m32_A          285 L-GFNTLLDDELHSPIITAFYSPEDPQY---------------R-------FSEFYRRLKEQGFV-IYPGKVSQSDCFRI  340 (366)
T ss_dssp             T-TCCBSSCGGGBCSSEEEEECCCCTTC---------------C-------HHHHHHHHHHTTEE-CEECCCSSSCEEEE
T ss_pred             C-CCeeccCchhcCceEEEEEcCccCCC---------------C-------HHHHHHHHHHCCEE-EECCcCCCCCEEEE
Confidence            7 88776542  344 888887631 11               0       12566677777644 33322224578999


Q ss_pred             EecCCCCCc
Q 048438          229 ATGATLTEE  237 (239)
Q Consensus       229 ~~~~~~t~~  237 (239)
                      +++..+|.+
T Consensus       341 ~~~~~~~~~  349 (366)
T 1m32_A          341 GNIGEVYAA  349 (366)
T ss_dssp             ECCSSCCHH
T ss_pred             ecCCCCCHH
Confidence            988776654

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=99.75  E-value=2.2e-17  Score=142.73  Aligned_cols=202  Identities=15%  Similarity=0.137  Sum_probs=131.4

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL   83 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l   83 (239)
                      .+.+|++++.+|.+|.+.|+++|.++|++||+++++|++|+.+..+.+     ...+ ++|++++++|| +++|.|+|++
T Consensus       169 ~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~-----~~~~-~~di~~~s~sK-~~~~~g~G~~  241 (420)
T 1t3i_A          169 KTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLD-----VQLI-DCDWLVASGHK-MCAPTGIGFL  241 (420)
T ss_dssp             TEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCC-----HHHH-TCSEEEEEGGG-TTSCTTCEEE
T ss_pred             CceEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEEhhhccCCccCc-----hhhc-CCCEEEEehhh-hcCCCceEEE
Confidence            367888899999999999999999999999999999999998765432     1222 38999999999 5678889988


Q ss_pred             EeeCcccccccccC--CCCcc-----C-----CCCceecCCCC-C-ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Q 048438           84 WATNPEYLKNKATE--SKPVV-----D-----YKDWQITLSRS-F-RSLKLWFVIRNYGMENLRHFLRSHVNMARLFERL  149 (239)
Q Consensus        84 ~~~~~~~l~~~~~~--~~~~~-----~-----~~~~~~~~~~~-~-~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~  149 (239)
                      +++ ++.+......  .+...     .     ...+.+..+.. . ..+.+..+++.+...+++++.++..++++++.+.
T Consensus       242 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~  320 (420)
T 1t3i_A          242 YGK-EEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQG  320 (420)
T ss_dssp             EEC-HHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             EEc-hHHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            875 3332222110  00000     0     00011111221 1 1123333555554445677888888999999999


Q ss_pred             HhCCCCeEEEcCC-----CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEE------
Q 048438          150 VSGDKRFEVVFPC-----HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNV------  218 (239)
Q Consensus       150 l~~~~g~~~~~~~-----~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~------  218 (239)
                      |++++|++++.+.     ..++++|.+++..                        ...+.+.|.++|.......      
T Consensus       321 L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~l~~~gi~v~~~~~~~~~~  376 (420)
T 1t3i_A          321 LGQIPQLRLYGPNPKHGDRAALASFNVAGLH------------------------ASDVATMVDQDGIAIRSGHHCTQPL  376 (420)
T ss_dssp             HHTCTTEEEESCCGGGSCBCSEEEEEETTBC------------------------HHHHHHHHHTTTEECBCSCTTCHHH
T ss_pred             HHhCCCeEEeCCCccccccCCEEEEEECCCC------------------------HHHHHHHHHHCCeEEeeccccchHH
Confidence            9998899988764     3789999875311                        1145566766665433221      


Q ss_pred             -EECC-EeEEEEEecCCCCCc
Q 048438          219 -VLGG-IYAIRFATGATLTEE  237 (239)
Q Consensus       219 -~~~g-~~~lR~~~~~~~t~~  237 (239)
                       ...| ..++|++++..+|.+
T Consensus       377 ~~~~g~~~~iRis~~~~~~~~  397 (420)
T 1t3i_A          377 HRLFDASGSARASLYFYNTKE  397 (420)
T ss_dssp             HHHTTCCCCEEEECCTTCCHH
T ss_pred             HHhcCCCCeEEEecCCCCCHH
Confidence             0113 578999988666654

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=99.74  E-value=1.6e-17  Score=141.58  Aligned_cols=196  Identities=12%  Similarity=0.105  Sum_probs=130.1

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL   83 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l   83 (239)
                      .+.+|+++..+|.+|.+.|+++|.++|++||+ +|+|++|+.+..+.+     .... ++|++++++||+ ++|.|+|++
T Consensus       138 ~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~-li~D~a~~~~~~~~~-----~~~~-~~d~~~~s~~K~-~g~~g~g~~  209 (382)
T 4hvk_A          138 DTILVSVQHANNEIGTIQPVEEISEVLAGKAA-LHIDATASVGQIEVD-----VEKI-GADMLTISSNDI-YGPKGVGAL  209 (382)
T ss_dssp             TEEEEECCSBCTTTCBBCCHHHHHHHHSSSSE-EEEECTTTBTTBCCC-----HHHH-TCSEEEEESGGG-TSCTTCEEE
T ss_pred             CceEEEEECCCCCceeeCCHHHHHHHHHHcCE-EEEEhHHhcCCCCCC-----chhc-CCCEEEEeHHHh-cCCCceEEE
Confidence            46788889999999999999999999999999 999999998766554     2211 389999999997 568899999


Q ss_pred             EeeCcccccccccCCCCccCCCCceecCCCC--CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcC
Q 048438           84 WATNPEYLKNKATESKPVVDYKDWQITLSRS--FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFP  161 (239)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~  161 (239)
                      ++++...+.+..... .    .......+..  .....+..+++. ..++++++.++..++++++.+.|++++++++..+
T Consensus       210 ~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~al~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~  283 (382)
T 4hvk_A          210 WIRKEAKLQPVILGG-G----QENGLRSGSENVPSIVGFGKAAEI-TAMEWREEAERLRRLRDRIIDNVLKIEESYLNGH  283 (382)
T ss_dssp             EEETTCCCCCSSCSS-C----TGGGTSCSCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSC
T ss_pred             EEcCccCcCcccccC-C----CcCccccCCcCHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHhcCCCeEEeCC
Confidence            987643222211000 0    0001111111  111223333442 2457788889999999999999999899998765


Q ss_pred             CC---eeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEE--C-----------C---
Q 048438          162 CH---FAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVL--G-----------G---  222 (239)
Q Consensus       162 ~~---~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~--~-----------g---  222 (239)
                      +.   .++++|.+++..                        ...+.+.|.++|.........  .           |   
T Consensus       284 ~~~~~~~~~~~~~~~~~------------------------~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~  339 (382)
T 4hvk_A          284 PEKRLPNNVNVRFSYIE------------------------GESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKH  339 (382)
T ss_dssp             SSSBCTTEEEEEETTCC------------------------HHHHHHHHHHTTCBCBCC--------CCCHHHHHTTCCH
T ss_pred             ccccCCCEEEEEECCCC------------------------HHHHHHHHHHCCEEEeeCCccCCCCCcchHHHHHcCCCh
Confidence            42   368899886532                        114556666666553322110  0           1   


Q ss_pred             ---EeEEEEEecCCCCCc
Q 048438          223 ---IYAIRFATGATLTEE  237 (239)
Q Consensus       223 ---~~~lR~~~~~~~t~~  237 (239)
                         ..++|++++..+|.+
T Consensus       340 ~~~~~~iRl~~~~~~t~e  357 (382)
T 4hvk_A          340 EEAHGTLLLTLGRYNTDE  357 (382)
T ss_dssp             HHHHTEEEEECCTTCCHH
T ss_pred             hhcCCeEEEEcCCCCCHH
Confidence               468999988777654

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=99.74  E-value=5e-18  Score=145.93  Aligned_cols=203  Identities=10%  Similarity=0.035  Sum_probs=132.4

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLW   84 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~   84 (239)
                      +.+|+++..+|.+|.+.|+++|.++|+++|+++++|++|+.+..+.+     +... ++|+++.++||++++|.++|+++
T Consensus       160 ~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~-----~~~~-~~di~~~s~sK~l~~~~~~G~l~  233 (393)
T 1vjo_A          160 PAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIF-----LDAW-GVDLAYSCSQKGLGCSPGASPFT  233 (393)
T ss_dssp             CSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTTSCCC-----TTTT-TCSEEECCSSSTTCSCSSCEEEE
T ss_pred             ceEEEEeccCCCcceeccHHHHHHHHHHcCCEEEEECCccccCcCCc-----cccc-CccEEEEcCcccccCCCceEEEE
Confidence            45778888899999999999999999999999999999997655443     2333 48999999999999999999999


Q ss_pred             eeCcccccccccC----CCCccCC-------CCceecC-CCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHh
Q 048438           85 ATNPEYLKNKATE----SKPVVDY-------KDWQITL-SRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVS  151 (239)
Q Consensus        85 ~~~~~~l~~~~~~----~~~~~~~-------~~~~~~~-~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~  151 (239)
                      +++ +.+......    .+...+.       ....... +.. .....+..+++.+..+++++..++..++++++.+.|+
T Consensus       234 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~  312 (393)
T 1vjo_A          234 MSS-RAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLE  312 (393)
T ss_dssp             ECH-HHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ECH-HHHHHHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHH
Confidence            854 333221100    0000000       0001111 111 1223344556554444567788888899999999999


Q ss_pred             CCCCeEEEcCCC---eeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhc-CcEEEEEEEECCEeEEE
Q 048438          152 GDKRFEVVFPCH---FAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINAS-GKAYMTNVVLGGIYAIR  227 (239)
Q Consensus       152 ~~~g~~~~~~~~---~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~g~~~lR  227 (239)
                      +. |++++.+..   .++++|+++...                +       ...+.+.|.++ |..........+..++|
T Consensus       313 ~~-g~~~~~~~~~~~~~~~~~~~~~~~----------------~-------~~~~~~~l~~~~gi~v~~g~~~~~~~~iR  368 (393)
T 1vjo_A          313 DI-GLSLHVEKEYRLPTLTTVCIPDGV----------------D-------GKAVARRLLNEHNIEVGGGLGELAGKVWR  368 (393)
T ss_dssp             HT-TCCBSSCGGGBCSSEEEEECCTTC----------------C-------HHHHHHHHHHHHCEECEECCGGGTTTEEE
T ss_pred             Hc-CCcccCCccccCCcEEEEEcCCCC----------------C-------HHHHHHHHHhhCCEEEecCccccCCCEEE
Confidence            87 888765432   468888875311                0       12566777776 66554433222456899


Q ss_pred             EEecCCCCCcC
Q 048438          228 FATGATLTEER  238 (239)
Q Consensus       228 ~~~~~~~t~~~  238 (239)
                      +++..+.+++|
T Consensus       369 is~~~~~~~~~  379 (393)
T 1vjo_A          369 VGLMGFNSRKE  379 (393)
T ss_dssp             EECCGGGCSHH
T ss_pred             EeCCccCChHH
Confidence            99777666553

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=99.74  E-value=8.1e-18  Score=143.70  Aligned_cols=203  Identities=13%  Similarity=0.023  Sum_probs=130.7

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL   83 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l   83 (239)
                      .+.+|+++..+|.+|.+.|+++|+++|++||+++++|++|+.+..+.+     .... ++|++++++||++++|.|+|++
T Consensus       144 ~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~-----~~~~-~~d~~~~s~~K~l~~~~G~g~~  217 (376)
T 3f0h_A          144 NFTGLLVNVDETSTAVLYDTMMIGEFCKKNNMFFVCDCVSAFLADPFN-----MNEC-GADVMITGSQKVLACPPGISVI  217 (376)
T ss_dssp             CCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSCCC-----HHHH-TCSEEEEETTTTTCCCSSCEEE
T ss_pred             CceEEEEecccCCcceecCHHHHHHHHHHcCCEEEEEcCccccCcccc-----cccc-CccEEEecCcccccCCCceEEE
Confidence            456788888899999999999999999999999999999998766543     2211 3899999999999989999998


Q ss_pred             EeeCccccccccc--CCCCccCCCCce---ecCCCC--CCh---HHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHhC
Q 048438           84 WATNPEYLKNKAT--ESKPVVDYKDWQ---ITLSRS--FRS---LKLWFVIRNYGME-NLRHFLRSHVNMARLFERLVSG  152 (239)
Q Consensus        84 ~~~~~~~l~~~~~--~~~~~~~~~~~~---~~~~~~--~~~---~~~~~~l~~~g~~-g~~~~~~~~~~la~~l~~~l~~  152 (239)
                      ++++ +.+.....  ..+.+.+...+.   ...+..  ...   .++..+++.+..+ +++++.++..++++++.+.|++
T Consensus       218 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  296 (376)
T 3f0h_A          218 VLAP-RGVERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKD  296 (376)
T ss_dssp             EECH-HHHHHHHTCCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             EECH-HHHHHhhcCCCCceeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            8753 33222111  000011100000   001111  111   3344556655555 6788888899999999999998


Q ss_pred             CCCeEEEcCCCee-EEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhc-CcEEEEEEEECCEeEEEEEe
Q 048438          153 DKRFEVVFPCHFA-VVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINAS-GKAYMTNVVLGGIYAIRFAT  230 (239)
Q Consensus       153 ~~g~~~~~~~~~~-iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~g~~~lR~~~  230 (239)
                      + ++++..+...+ ++.+...+..                        ...+.+.|.++ |..+.......+..++|+++
T Consensus       297 ~-~~~~~~~~~~~~~~~~~~~~~~------------------------~~~l~~~l~~~~gi~v~~g~~~~~~~~lRis~  351 (376)
T 3f0h_A          297 L-PFELVSESPANGVTSVHPTTAN------------------------AYDIFLKLKDEYGIWICPNGGEMKDTIFRVGH  351 (376)
T ss_dssp             S-SEEECCSSBBTTEEEEEESSSC------------------------HHHHHHHHHHHSSEECEECCGGGTTTCEEEEC
T ss_pred             c-CCccCccccCceEEEEeCCCCC------------------------HHHHHHHHHHhCCEEEecCccccCCCEEEEec
Confidence            7 78877554333 4444432211                        12566777777 55444332222456899998


Q ss_pred             cCCCCCcC
Q 048438          231 GATLTEER  238 (239)
Q Consensus       231 ~~~~t~~~  238 (239)
                      +...|.+|
T Consensus       352 ~~~~t~e~  359 (376)
T 3f0h_A          352 IGALTHED  359 (376)
T ss_dssp             CSSCCHHH
T ss_pred             CCCCCHHH
Confidence            87766543

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}

Probab=99.73  E-value=2.2e-18  Score=149.11  Aligned_cols=145  Identities=13%  Similarity=0.145  Sum_probs=108.8

Q ss_pred             cEEEEEecCCCC-cccccChhHHHHHHHHhCCEEEEecccccccccCcccc-cccCCCCCcceEEEcCcccCCCcccceE
Q 048438            5 PLFLCATIGTTA-ITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFR-HFIDGVEGADSFSLNAHKWFFATLDCCC   82 (239)
Q Consensus         5 p~~vv~t~gtt~-~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~-~~~~~~~~~Ds~~~~~hK~l~~P~g~g~   82 (239)
                      .+++|++.-++. .+..+||++|+++||+||+++|||.|||+...++++.. ..++ +.++|+++.|+||++.+|.|+++
T Consensus       216 ~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~-~GrAD~vVqS~HK~llvpIGG~i  294 (501)
T 3hl2_A          216 CILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGAR-VGRIDAFVQSLDKNFMVPVGGAI  294 (501)
T ss_dssp             GEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHH-HSCCCEEEEEHHHHHCCCSSCEE
T ss_pred             cEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHh-cCCCcEEEecccccceeecCceE
Confidence            455555544444 45779999999999999999999999998764443211 1111 22499999999999999999988


Q ss_pred             EEeeCcccccccccCCCCccCCCCceecCCCC--CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC---CeE
Q 048438           83 LWATNPEYLKNKATESKPVVDYKDWQITLSRS--FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK---RFE  157 (239)
Q Consensus        83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~---g~~  157 (239)
                      +++++++++......            ..+|+  +.++.+|.++..+|.+|+++.+++..+++++|+++|+++.   |-+
T Consensus       295 i~~~d~e~l~~~~~~------------yPGr~S~Spsldl~~tLL~lGr~Gy~~ll~e~~ela~~L~~~L~~la~~~ge~  362 (501)
T 3hl2_A          295 IAGFNDSFIQEISKM------------YPGRASASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYNER  362 (501)
T ss_dssp             EEESCHHHHHHHHHT------------SCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred             EEeCCHHHHHHHHHh------------CCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence            888887766554321            11333  5568899999999999999999999999999999998752   455


Q ss_pred             EEcCC
Q 048438          158 VVFPC  162 (239)
Q Consensus       158 ~~~~~  162 (239)
                      ++..+
T Consensus       363 ll~~~  367 (501)
T 3hl2_A          363 LLHTP  367 (501)
T ss_dssp             BCCCT
T ss_pred             hcCCC
Confidence            55433

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=99.72  E-value=5.8e-17  Score=139.83  Aligned_cols=200  Identities=14%  Similarity=0.126  Sum_probs=127.0

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccce-E
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCC-C   82 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g-~   82 (239)
                      .+.+|++++.+|.+|.+.|+++|.++|+++|+++|+|+||+.+..+.+     +..+ ++|++++++||++ +|. +| +
T Consensus       165 ~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~-----~~~~-~~d~~~~s~~K~~-g~~-~G~~  236 (406)
T 3cai_A          165 STRLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPYRLLD-----IRET-DADVVTVNAHAWG-GPP-IGAM  236 (406)
T ss_dssp             TEEEEEEESBCTTTCBBCCCHHHHHHHHHTTCEEEEECTTTTTTCCCC-----HHHH-CCSEEEEEGGGGT-SCS-CEEE
T ss_pred             CceEEEEeCCcCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCCCC-----chhc-CCCEEEeehhhhc-CCC-cCeE
Confidence            367888899999999999999999999999999999999997766543     1112 3899999999986 475 78 7


Q ss_pred             EEeeCcccccccccCCCCccCC-CCceecCCCC-CCh-HHHHHHHHHhCH--------------HHHHHHHHHHHHHHHH
Q 048438           83 LWATNPEYLKNKATESKPVVDY-KDWQITLSRS-FRS-LKLWFVIRNYGM--------------ENLRHFLRSHVNMARL  145 (239)
Q Consensus        83 l~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~-~~~-~~~~~~l~~~g~--------------~g~~~~~~~~~~la~~  145 (239)
                      +++++ +.+....... ..+.. ....+..+.. ..+ ..+..+++.+..              +.+++..++..+++++
T Consensus       237 ~~~~~-~~~~~l~~~~-~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (406)
T 3cai_A          237 VFRDP-SVMNSFGSVS-TNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDY  314 (406)
T ss_dssp             EESCH-HHHHTSCCCC-SCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeh-HHHhhcCCcc-cCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence            77643 3332221100 00000 0001111111 111 122233443211              1367778888899999


Q ss_pred             HHHHHhCCCCeEEEcCC--CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEE-----
Q 048438          146 FERLVSGDKRFEVVFPC--HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNV-----  218 (239)
Q Consensus       146 l~~~l~~~~g~~~~~~~--~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-----  218 (239)
                      +.+.|+++++++++.+.  ..++++|.+++..                        ...+.+.|.++|.......     
T Consensus       315 l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~L~~~gi~v~~g~~~~~~  370 (406)
T 3cai_A          315 LMVSLRSLPLVMLIGRPEAQIPVVSFAVHKVP------------------------ADRVVQRLADNGILAIANTGSRVL  370 (406)
T ss_dssp             HHHHHHTCTTEEECCCCSSBCSEEEEEETTBC------------------------HHHHHHHHHHTTEECEECCSCHHH
T ss_pred             HHHHHhcCCCeEEcCCccccCCEEEEEECCcC------------------------HHHHHHHHHHCCcEEecCChHHHH
Confidence            99999998899887653  4678889886421                        1245666666665443322     


Q ss_pred             -EE---CCEeEEEEEecCCCCCc
Q 048438          219 -VL---GGIYAIRFATGATLTEE  237 (239)
Q Consensus       219 -~~---~g~~~lR~~~~~~~t~~  237 (239)
                       ..   .+..++|++++..+|.+
T Consensus       371 ~~~g~~~~~~~iRis~~~~~t~e  393 (406)
T 3cai_A          371 DVLGVNDVGGAVTVGLAHYSTMA  393 (406)
T ss_dssp             HHHTTTTTTCCEEEECCTTCCHH
T ss_pred             HHcCCCCCCCeEEEEeecCCCHH
Confidence             00   13468999988776654

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=99.72  E-value=3.4e-16  Score=135.70  Aligned_cols=159  Identities=9%  Similarity=0.045  Sum_probs=108.2

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL   83 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l   83 (239)
                      .+.+|+++..+|.+|.+.|+++|.++|++||+++++|+||+.+..+.+     .... ++|++++++||+ ++|.|+|++
T Consensus       163 ~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~-----~~~~-~~di~~~s~sK~-~g~~g~G~~  235 (423)
T 3lvm_A          163 DTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPID-----LSQL-KVDLMSFSGHKI-YGPKGIGAL  235 (423)
T ss_dssp             TEEEEECCSBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCC-----TTTS-CCSEEEEESTTT-TSCSSCEEE
T ss_pred             CcEEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEEhhhhcCCCCcC-----hhhc-CCCEEEechHHh-cCCCCeEEE
Confidence            467888888899999999999999999999999999999998766544     2233 389999999995 678889999


Q ss_pred             EeeCcccccccccCCCCccCCCCceecCCC-C-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcC
Q 048438           84 WATNPEYLKNKATESKPVVDYKDWQITLSR-S-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFP  161 (239)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~  161 (239)
                      ++++. .............  .......+. . .....+..+++.+. +.+++..++..++++++.+.|+++++++++.+
T Consensus       236 ~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~  311 (423)
T 3lvm_A          236 YVRRK-PRVRIEAQMHGGG--HERGMRSGTLPVHQIVGMGEAYRIAK-EEMATEMERLRGLRNRLWNGIKDIEEVYLNGD  311 (423)
T ss_dssp             EECBT-TBCCCCCSSCSSC--TTTTTCCSCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTSTTEEEESC
T ss_pred             EEecc-ccCCCCccccCCc--ccccccCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCC
Confidence            98642 2222111000000  000001111 1 11122333444332 23678888889999999999999999998866


Q ss_pred             CC---eeEEEEEEcC
Q 048438          162 CH---FAVVCFRVSP  173 (239)
Q Consensus       162 ~~---~~iv~f~~~~  173 (239)
                      +.   .++++|.+++
T Consensus       312 ~~~~~~~~~~~~~~~  326 (423)
T 3lvm_A          312 LEHGAPNILNVSFNY  326 (423)
T ss_dssp             STTBCTTEEEEEETT
T ss_pred             ccccCCCeEEEEeCC
Confidence            43   4688898854

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*

Probab=99.72  E-value=1.1e-16  Score=140.18  Aligned_cols=199  Identities=16%  Similarity=0.113  Sum_probs=128.9

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecc-cccccccCcccccccCCCCCcceEEEcCcc-----cCCCc
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAA-YAGSACIFPEFRHFIDGVEGADSFSLNAHK-----WFFAT   77 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A-~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK-----~l~~P   77 (239)
                      .+.+|++++. |.+|.++|+++|+++||++|+|+|||+. ++.+.+..+.      .+ ++|++++++||     |+++|
T Consensus       196 ~t~~v~i~~p-n~tG~~~~l~~i~~la~~~g~~vivd~d~~a~g~~~~~~------~~-g~D~~~~s~kk~~~~~~~~Gp  267 (438)
T 1wyu_A          196 EVGAVVVQNP-NFLGALEDLGPFAEAAHGAGALFVAVADPLSLGVLKPPG------AY-GADIAVGDGQSLGLPMGFGGP  267 (438)
T ss_dssp             TEEEEEEESS-CTTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTBCCHH------HH-TCSEEEEECTTTTCCCGGGCS
T ss_pred             CeEEEEEECC-CCCeEEecHHHHHHHHHHcCCEEEEEechhhccCcCCCc------cC-CCCEEEECCcccCCCccCCCC
Confidence            4677888886 9999999999999999999999998765 5555443331      11 39999999888     78889


Q ss_pred             ccceEEEeeCcccccccccCC-CCccCC---CCcee-----------cCCCC-C---Ch-HHHHHH--HHHhCHHHHHHH
Q 048438           78 LDCCCLWATNPEYLKNKATES-KPVVDY---KDWQI-----------TLSRS-F---RS-LKLWFV--IRNYGMENLRHF  135 (239)
Q Consensus        78 ~g~g~l~~~~~~~l~~~~~~~-~~~~~~---~~~~~-----------~~~~~-~---~~-~~~~~~--l~~~g~~g~~~~  135 (239)
                       ++|++++++ ++........ +...+.   ..+.+           +.+.. .   .+ ..++++  +..++.++++++
T Consensus       268 -~~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~~~~g~~~~  345 (438)
T 1wyu_A          268 -HFGFLATKK-AFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREV  345 (438)
T ss_dssp             -CCEEEEECG-GGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CeeEEEEcH-HHHHhCCCceeccccccCCCcceeeeccccccccchhcccCCccchHHHHHHHHHHHHHHhCHHHHHHH
Confidence             899999864 3333221100 000000   00111           11111 1   11 233333  677788889999


Q ss_pred             HHHHHHHHHHHHHHHhCCCCeEEEcC-CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEE
Q 048438          136 LRSHVNMARLFERLVSGDKRFEVVFP-CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAY  214 (239)
Q Consensus       136 ~~~~~~la~~l~~~l~~~~g~~~~~~-~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~  214 (239)
                      .++..++++++.+.|++++|++++.+ +..+++.|+.+. .                        ...+.++|.++|...
T Consensus       346 ~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~-~------------------------~~~~~~~L~~~gi~v  400 (438)
T 1wyu_A          346 ALKSVEMAHKLHALLLEVPGVRPFTPKPFFNEFALALPK-D------------------------PEAVRRALAERGFHG  400 (438)
T ss_dssp             HHHHHHHHHHHHHHHTTSTTCEECSCSSBCSEEEEECSS-C------------------------HHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHhcCCCeEECCCCCeEEEEEEeCCC-C------------------------HHHHHHHHHHCCcee
Confidence            99999999999999999889998865 345566676531 1                        125666777776654


Q ss_pred             -EEEEEECCEeEEEEEecCCCCCc
Q 048438          215 -MTNVVLGGIYAIRFATGATLTEE  237 (239)
Q Consensus       215 -~~~~~~~g~~~lR~~~~~~~t~~  237 (239)
                       +......+..++|++++..+|.+
T Consensus       401 ~~~~~~~~~~~~lRis~~~~~t~e  424 (438)
T 1wyu_A          401 ATPVPREYGENLALFAATELHEEE  424 (438)
T ss_dssp             CEECCTTSCSSEEEEECCTTCCHH
T ss_pred             ccccccccCCCeEEEEecccCCHH
Confidence             12222223568999988666554

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=99.71  E-value=4.6e-17  Score=139.06  Aligned_cols=156  Identities=11%  Similarity=0.063  Sum_probs=107.0

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL   83 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l   83 (239)
                      .+.+|++++.+|.+|.+.|+++|.++|++||++ |+|++|+.+..+.+     +..+ ++|++++++||+ ++|.|+|++
T Consensus       138 ~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~-i~D~a~~~g~~~~~-----~~~~-~~di~~~s~sK~-~g~~g~G~~  209 (382)
T 4eb5_A          138 DTILVSVQHANNEIGTIQPVEEISEVLAGKAAL-HIDATASVGQIEVD-----VEKI-GADMLTISSNDI-YGPKGVGAL  209 (382)
T ss_dssp             TEEEEECCSBCTTTCBBCCHHHHHHHHTTSSEE-EEECTTTBTTBCCC-----HHHH-TCSEEEEETGGG-TCCSSCEEE
T ss_pred             CCeEEEEeccCCCccccCCHHHHHHHHHHCCCE-EEEcchhcCCcccC-----cccc-CCCEEEeehHHh-cCCCceEEE
Confidence            356788899999999999999999999999999 99999997655433     2212 389999999998 668889999


Q ss_pred             EeeCcccccccccCCCCccCCCCceecCCCC--CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcC
Q 048438           84 WATNPEYLKNKATESKPVVDYKDWQITLSRS--FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFP  161 (239)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~  161 (239)
                      ++++...+.+..... ..    ......+..  .....+..+++.+ .++++++.++..++++++.+.|++++++++..+
T Consensus       210 ~~~~~~~l~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~al~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~  283 (382)
T 4eb5_A          210 WIRKEAKLQPVILGG-GQ----ENGLRSGSENVPSIVGFGKAAEIT-AMEWREEAERLRRLRDRIIDNVLKIEESYLNGH  283 (382)
T ss_dssp             EEETTCCCCCSSCSS-CT----GGGTSCSCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSC
T ss_pred             EEccccccCceecCC-Cc----cccccCCCccHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHhhCCCeEEeCC
Confidence            986542122211000 00    001111111  1112333445443 346788888899999999999999889988755


Q ss_pred             CC---eeEEEEEEcC
Q 048438          162 CH---FAVVCFRVSP  173 (239)
Q Consensus       162 ~~---~~iv~f~~~~  173 (239)
                      +.   .++++|++++
T Consensus       284 ~~~~~~~~~~~~~~~  298 (382)
T 4eb5_A          284 PEKRLPNNVNVRFSY  298 (382)
T ss_dssp             SSSBCTTEEEEEETT
T ss_pred             cccCCCCEEEEEeCC
Confidence            32   5688888864

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.70  E-value=6e-17  Score=138.51  Aligned_cols=191  Identities=15%  Similarity=0.116  Sum_probs=124.2

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHh--CCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQF--GIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCC   82 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~--gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~   82 (239)
                      +.+|++++.+|.+|.+.|+++|.++|++|  |+++|+|++|+.+..+++     +..+ ++|++++++|||+++|.|+|+
T Consensus       138 ~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~~~li~D~a~~~~~~~~~-----~~~~-~~d~~~~s~~K~~~~~~G~G~  211 (385)
T 2bkw_A          138 YGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFE-----FDEW-GVDFALTASQKAIGAPAGLSI  211 (385)
T ss_dssp             CSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCC-----TTTT-TCSEEEEESSSTTCCCSCEEE
T ss_pred             CCEEEEEccCCCcCeEcCHHHHHHHHHhhCCCCEEEEECccccCCcccc-----cccc-CceEEEecCccccccCCcceE
Confidence            55778889999999999999999999999  999999999987765543     2333 389999999999999999999


Q ss_pred             EEeeCccccc-ccc-----cCCCCccCCCCc-----eecCC-------CC-CChHHHHHHHHHhCHHHHHHHHHHHHHHH
Q 048438           83 LWATNPEYLK-NKA-----TESKPVVDYKDW-----QITLS-------RS-FRSLKLWFVIRNYGMENLRHFLRSHVNMA  143 (239)
Q Consensus        83 l~~~~~~~l~-~~~-----~~~~~~~~~~~~-----~~~~~-------~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la  143 (239)
                      +++++ +.+. ...     .......+...+     ....+       .. ...+.+..+++.+...+++++.++..+++
T Consensus       212 ~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~  290 (385)
T 2bkw_A          212 SLCSS-RFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMS  290 (385)
T ss_dssp             EEECH-HHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             EEEcH-HHHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence            98854 3332 110     000000000000     01111       11 11133344555544445777888888999


Q ss_pred             HHHHHHH-hCCCCeEEEcCC-----CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEE
Q 048438          144 RLFERLV-SGDKRFEVVFPC-----HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTN  217 (239)
Q Consensus       144 ~~l~~~l-~~~~g~~~~~~~-----~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~  217 (239)
                      +++.+.| +++ |++++.+.     ..++++|.+++                          ...+.++|.++|......
T Consensus       291 ~~l~~~L~~~~-g~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~l~~~gi~v~~g  343 (385)
T 2bkw_A          291 DWFKDSLVNGL-QLTSVSRYPSNMSAHGLTAVYVAD--------------------------PPDVIAFLKSHGVVIAGG  343 (385)
T ss_dssp             HHHHHHHHTTT-CCEESSCSSSTTBCSSCEEEECSC--------------------------HHHHHHHHHHTTEECBCC
T ss_pred             HHHHHHHHHhc-CceecccCcccccCCceEEEecCC--------------------------HHHHHHHHHHCCeEEeCC
Confidence            9999999 887 88887532     36788888743                          125666676666543322


Q ss_pred             EEE-CCEeEEEEE
Q 048438          218 VVL-GGIYAIRFA  229 (239)
Q Consensus       218 ~~~-~g~~~lR~~  229 (239)
                      ... .+..++|++
T Consensus       344 ~~~~~~~~~iRis  356 (385)
T 2bkw_A          344 IHKDIGPKYIRIG  356 (385)
T ss_dssp             CCTTTGGGEEEEC
T ss_pred             CCcccCCCEEEEE
Confidence            111 135689999

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=99.69  E-value=2e-17  Score=142.24  Aligned_cols=203  Identities=12%  Similarity=0.016  Sum_probs=127.6

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLW   84 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~   84 (239)
                      +.+|+++..+|.+|.+.|+++|.++|+++|+++++|+||+.+..+.+     +..+ ++|++++++||++++|.|+|+++
T Consensus       144 ~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~Dea~~~g~~~~~-----~~~~-~~d~~~~s~~K~~~~~~g~g~~~  217 (396)
T 2ch1_A          144 PKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFY-----MDKW-EIDAVYTGAQKVLGAPPGITPIS  217 (396)
T ss_dssp             CSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCC-----TTTT-TCCEEECCCC-CCCCCSSCEEEE
T ss_pred             CCEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEEccccccCCccc-----hhhc-CcCEEEEcCCccccCCCCeEEEE
Confidence            45777888899999999999999999999999999999997755443     3333 38999999999999999999888


Q ss_pred             eeCcccccccccC----CCCccC-------CCC---ceecCCC-CC-ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Q 048438           85 ATNPEYLKNKATE----SKPVVD-------YKD---WQITLSR-SF-RSLKLWFVIRNYGMENLRHFLRSHVNMARLFER  148 (239)
Q Consensus        85 ~~~~~~l~~~~~~----~~~~~~-------~~~---~~~~~~~-~~-~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~  148 (239)
                      +++ ..+......    .....+       +..   .....+. .. ....+..+++.+..++++++.++..++++++.+
T Consensus       218 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~  296 (396)
T 2ch1_A          218 ISP-KALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYE  296 (396)
T ss_dssp             ECH-HHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             ECH-HHHHhhhhccCcccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            854 332211100    000000       000   0001111 11 113333455554445677888888899999999


Q ss_pred             HHhCCCCeEEEcCCC----eeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhc-CcEEEEEEEECCE
Q 048438          149 LVSGDKRFEVVFPCH----FAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINAS-GKAYMTNVVLGGI  223 (239)
Q Consensus       149 ~l~~~~g~~~~~~~~----~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~g~  223 (239)
                      .|++. |++++.+..    .+++.|+++...                +       ...+.++|.++ |..........+.
T Consensus       297 ~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~----------------~-------~~~~~~~L~~~~gi~v~~g~~~~~~  352 (396)
T 2ch1_A          297 GLGKM-GLDIFVKDPRHRLPTVTGIMIPKGV----------------D-------WWKVSQYAMNNFSLEVQGGLGPTFG  352 (396)
T ss_dssp             HHHHH-TCCBSSCSGGGBCTTEEEEECCTTC----------------C-------HHHHHHHHHHHHCBCCBCCCGGGTT
T ss_pred             HHHHC-CCeeccCCccccCCceEEEEcCCCC----------------C-------HHHHHHHHHHhCCEEEecCccccCC
Confidence            99987 888765432    137888875211                0       12456666654 6544322211234


Q ss_pred             eEEEEEecCCCCCcC
Q 048438          224 YAIRFATGATLTEER  238 (239)
Q Consensus       224 ~~lR~~~~~~~t~~~  238 (239)
                      .++|++++.+++++|
T Consensus       353 ~~iRi~~~~~~~~~e  367 (396)
T 2ch1_A          353 KAWRVGIMGECSTVQ  367 (396)
T ss_dssp             TEEEEECCGGGCSHH
T ss_pred             CEEEEECCCCcCCHH
Confidence            689999877665443

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=99.69  E-value=1.5e-15  Score=129.58  Aligned_cols=157  Identities=10%  Similarity=0.103  Sum_probs=104.6

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhC--CEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccce
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFG--IWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCC   81 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~g--i~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g   81 (239)
                      .+.+|+++..+|.+|.+.|+++|.++|++||  +++++|++|+.+..+.+     +..+ .+|++++++||+ ++|.|+|
T Consensus       139 ~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~li~Dea~~~~~~~~~-----~~~~-~~di~~~s~sK~-~g~~G~G  211 (384)
T 1eg5_A          139 DTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIPFS-----LEKL-EVDYASFSAHKF-HGPKGVG  211 (384)
T ss_dssp             TEEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTSCCC-----CTTT-CCSEEEEEGGGG-TSCTTCE
T ss_pred             CCeEEEEECCCCCcccccCHHHHHHHHHhcCCceEEEEEhhhhcCCcccC-----chhc-CCCEEEecHHHh-cCCCceE
Confidence            3567888899999999999999999999999  99999999986654332     2333 489999999998 5677889


Q ss_pred             EEEeeCcccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc
Q 048438           82 CLWATNPEYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF  160 (239)
Q Consensus        82 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~  160 (239)
                      ++++++...+....... .. . ... ...+.. .....+..+++.+ .+.+++..++..++++++.+.|++ +|++++.
T Consensus       212 ~~~~~~~~~~~~~~~~~-~~-~-~~~-~~~~~~~~~~~a~~~al~~~-~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~  285 (384)
T 1eg5_A          212 ITYIRKGVPIRPLIHGG-GQ-E-RGL-RSGTQNVPGIVGAARAMEIA-VEELSEAAKHMEKLRSKLVSGLMN-LGAHIIT  285 (384)
T ss_dssp             EEEECTTSCCCCSBCSS-CT-T-TTT-BCSCCCHHHHHHHHHHHHHH-HHTHHHHHHHHHHHHHHHHHHHHT-TTCEECS
T ss_pred             EEEEcCCCccccccccC-cc-c-ccc-cCCCCChHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHhCC-CCeEEeC
Confidence            98886431012111000 00 0 000 011111 1112333444432 345677888888999999999998 6998876


Q ss_pred             CC---CeeEEEEEEcC
Q 048438          161 PC---HFAVVCFRVSP  173 (239)
Q Consensus       161 ~~---~~~iv~f~~~~  173 (239)
                      ++   ..+++.|.+++
T Consensus       286 ~~~~~~~~~~~~~~~~  301 (384)
T 1eg5_A          286 PLEISLPNTLSVSFPN  301 (384)
T ss_dssp             CTTSBCTTEEEEECTT
T ss_pred             CcccCCCCEEEEEeCC
Confidence            53   24678888764

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=99.68  E-value=1.7e-15  Score=130.24  Aligned_cols=160  Identities=11%  Similarity=0.058  Sum_probs=107.4

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL   83 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l   83 (239)
                      .+.+|+++..+|.+|.+.|+++|.++|++||+++++|++|+.+..+.+     +..+  +|++++++||+ ++|.|+|++
T Consensus       159 ~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~-----~~~~--~d~~~~s~~K~-~g~~g~g~~  230 (400)
T 3vax_A          159 DTLLVSLMHVNNETGVIQPVAELAQQLRATPTYLHVDAAQGYGKVPGD-----LTTP--IDMISISGHKI-GAPKGVGAL  230 (400)
T ss_dssp             TEEEEECCSBCTTTCBBCCHHHHHHHHTTSSCEEEEECTTTTTTSGGG-----GGSC--CSEEEEETGGG-TSCSSCEEE
T ss_pred             CceEEEEECCCCCceeeCcHHHHHHHHHhcCCEEEEEhhhhcCCCCcC-----hhhc--CcEEEEeHHHh-CCCCceEEE
Confidence            467888889999999999999999999999999999999998766544     3343  89999999995 678899999


Q ss_pred             E-eeCcccccccccCCCCccC-CCCceecCCCC-C-ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Q 048438           84 W-ATNPEYLKNKATESKPVVD-YKDWQITLSRS-F-RSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVV  159 (239)
Q Consensus        84 ~-~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~  159 (239)
                      + +++..+......-...... ........+.. . ....+..+++.+ .++++++.++..++++++.+.|+ .+++++.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~-~~~~~~~~~~~~~~~~~l~~~L~-~~~~~~~  308 (400)
T 3vax_A          231 VTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIF-EAEHAQWQVAAQDLRSRLLAGLA-STSFQVN  308 (400)
T ss_dssp             EECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHH-HHSHHHHHHHHHHHHHHHHHHHT-TTTCEEC
T ss_pred             EEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHhhC-CCCEEEe
Confidence            9 8763222100000000000 00001111111 1 112222334432 34567888888899999999999 7899988


Q ss_pred             cCCC---eeEEEEEEcC
Q 048438          160 FPCH---FAVVCFRVSP  173 (239)
Q Consensus       160 ~~~~---~~iv~f~~~~  173 (239)
                      .++.   .+++.|.+++
T Consensus       309 ~~~~~~~~~~~~~~~~~  325 (400)
T 3vax_A          309 GDQDHVVPHILNLSFED  325 (400)
T ss_dssp             SCTTSBCTTEEEEECTT
T ss_pred             CCcccCCCCEEEEEeCC
Confidence            6653   3688888765

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=99.68  E-value=1.7e-16  Score=134.21  Aligned_cols=192  Identities=16%  Similarity=0.107  Sum_probs=121.6

Q ss_pred             ccEEEEEecCCCCccc---ccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCC-CCcceEEEcCcccCCCccc
Q 048438            4 IPLFLCATIGTTAITA---VDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGV-EGADSFSLNAHKWFFATLD   79 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~---i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~-~~~Ds~~~~~hK~l~~P~g   79 (239)
                      .|.+|+++.. +++|.   .+++++|.++|++||+++|+|++|+.+............++ ..+|++++++||+ ++|.|
T Consensus       141 ~~~~v~~~~~-~~tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~-g~~~G  218 (356)
T 1v72_A          141 QPACVSITQA-TEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKN-GVLAA  218 (356)
T ss_dssp             EEEEEEEESS-CTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGG-TCSSC
T ss_pred             CceEEEEEcC-CCCCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHhhhhhcCCEEEEecccC-CCcCc
Confidence            5677777774 45999   77799999999999999999999975432111000001111 1489999999999 67988


Q ss_pred             ceEEEeeCcccccccccCCCCccCCCCceecCCCCC-ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 048438           80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSF-RSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEV  158 (239)
Q Consensus        80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~  158 (239)
                      +|+++. +++.+......    .     ...+.... ........++.+..+.+.++.++..++++++.+.|++++|+++
T Consensus       219 ~g~~~~-~~~~~~~~~~~----~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~  288 (356)
T 1v72_A          219 EAIVLF-NTSLATEMSYR----R-----KRAGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEV  288 (356)
T ss_dssp             EEEEES-SGGGHHHHHHH----H-----HHTTCCCSSTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEEE
T ss_pred             cEEEEE-CHHHHhhHHHH----h-----hccCchhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCCcEE
Confidence            888876 44443322100    0     00000011 1222333445554445666777888999999999998889998


Q ss_pred             EcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCCc
Q 048438          159 VFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTEE  237 (239)
Q Consensus       159 ~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~  237 (239)
                      ..++..+++.+.++.                            .+.++|.++|..+.+.. + +..++|++++...|.+
T Consensus       289 ~~~~~~~~~~~~~~~----------------------------~~~~~l~~~gi~v~~g~-~-~~~~iRi~~~~~~~~~  337 (356)
T 1v72_A          289 LGGTEANILFCRLDS----------------------------AMIDALLKAGFGFYHDR-W-GPNVVRFVTSFATTAE  337 (356)
T ss_dssp             ESCCCSSEEEEEECH----------------------------HHHHHHHHTTCBCBCSS-S-STTEEEEECCTTCCHH
T ss_pred             ccCCCccEEEEEcCH----------------------------HHHHHHHhcCeEEeccc-c-CCCeEEEEecCCCCHH
Confidence            877777888777631                            45666766776544222 2 2468999966555543

>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*

Probab=99.67  E-value=4.1e-17  Score=140.85  Aligned_cols=200  Identities=10%  Similarity=-0.043  Sum_probs=128.5

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL   83 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l   83 (239)
                      .|.+|++++.+|.+|.+.|+++|.++   +|+++|+|+||+.+..+.+     +.   .+|++++++||+++.|.|+|++
T Consensus       165 ~~~~v~~~~~~nptG~~~~~~~i~~~---~~~~vivD~a~~~~~~~~~-----~~---~~di~~~s~sK~~~~~gg~g~l  233 (398)
T 2fyf_A          165 SVDVIAWAHNETSTGVAVAVRRPEGS---DDALVVIDATSGAGGLPVD-----IA---ETDAYYFAPQKNFASDGGLWLA  233 (398)
T ss_dssp             TCSEEEEESEETTTTEECCCCCCTTC---C-CEEEEECTTTTTTSCCC-----GG---GCSEEEECTTSTTCSCSSEEEE
T ss_pred             CCCEEEEeCcCCCcceecchHHhhhh---cCCeEEEEeccccCCcccC-----cc---cCcEEEEecCcccCCCCceEEE
Confidence            35678888899999999999999887   8999999999998766543     22   3899999999999887678888


Q ss_pred             EeeCccccccccc-----C-CCCccCCCC------ceec-CCCC-CChHHHHHHHHHhCHHH-HHHHHHHHHHHHHHHHH
Q 048438           84 WATNPEYLKNKAT-----E-SKPVVDYKD------WQIT-LSRS-FRSLKLWFVIRNYGMEN-LRHFLRSHVNMARLFER  148 (239)
Q Consensus        84 ~~~~~~~l~~~~~-----~-~~~~~~~~~------~~~~-~~~~-~~~~~~~~~l~~~g~~g-~~~~~~~~~~la~~l~~  148 (239)
                      ++++ +.+.....     . ...+.+...      .... .+.. .....+..+++.+...+ ++++.++..++++++.+
T Consensus       234 ~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~  312 (398)
T 2fyf_A          234 IMSP-AALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYS  312 (398)
T ss_dssp             EECH-HHHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred             EECH-HHHHHhhcccccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            8753 33322100     0 000000000      0000 1111 11234445565554444 78888889999999999


Q ss_pred             HHhCCCCeEEEc-CC--Cee-EEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEe
Q 048438          149 LVSGDKRFEVVF-PC--HFA-VVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIY  224 (239)
Q Consensus       149 ~l~~~~g~~~~~-~~--~~~-iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~  224 (239)
                      .|++++|++++. ++  ..+ +++|+++.. .               +       ...+.+.|.++|..+.......+..
T Consensus       313 ~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~---------------~-------~~~l~~~L~~~gI~v~~g~~~~~~~  369 (398)
T 2fyf_A          313 WAQERPYTTPFVTDPGLRSQVVGTIDFVDD-V---------------D-------AGTVAKILRANGIVDTEPYRKLGRN  369 (398)
T ss_dssp             HHHHSTTEEESCCSGGGBCSSEEEEEECTT-S---------------C-------HHHHHHHHHHTTCBCCSCCTTTCSS
T ss_pred             HHHHcCCceeccCChhhcCCcEEEEECCCC-C---------------C-------HHHHHHHHHHCCcEEecCcccCCCC
Confidence            999988999874 23  466 899998531 1               0       1256667777766543321112346


Q ss_pred             EEEEEecCCCCCcC
Q 048438          225 AIRFATGATLTEER  238 (239)
Q Consensus       225 ~lR~~~~~~~t~~~  238 (239)
                      ++|++++..+|.+|
T Consensus       370 ~iRis~~~~~t~e~  383 (398)
T 2fyf_A          370 QLRVAMFPAVEPDD  383 (398)
T ss_dssp             EEEEECCTTSCHHH
T ss_pred             EEEEEecCCCCHHH
Confidence            89999988766543

>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*

Probab=99.67  E-value=3.4e-16  Score=133.24  Aligned_cols=193  Identities=11%  Similarity=0.079  Sum_probs=123.4

Q ss_pred             ccEEEEEecCCCCcccc-cChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceE
Q 048438            4 IPLFLCATIGTTAITAV-DPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCC   82 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i-~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~   82 (239)
                      .+-+|++++.+|.||.+ .|+++|      +|+++|||+||+.+..+.+     +..   .|++++++|||++ |.|+|+
T Consensus       142 ~t~~v~~~~~~n~tG~~~~~l~~i------~~~~vivD~a~~~~~~~~~-----~~~---~d~~~~s~~K~~g-~~G~G~  206 (362)
T 2c0r_A          142 NAAYLHLTSNETIEGAQFKAFPDT------GSVPLIGDMSSDILSRPFD-----LNQ---FGLVYAGAQKNLG-PSGVTV  206 (362)
T ss_dssp             TEEEEEEESEETTTTEECSSCCCC------TTSCEEEECTTTTTSSCCC-----GGG---CSEEEEETTTTTC-CSSCEE
T ss_pred             CcCEEEEeCCcCccceeccccccc------CCCEEEEEChhhccCCccc-----hhH---CcEEEEecccccc-CcCcEE
Confidence            46778889999999994 899988      8999999999998866543     332   5999999999985 889999


Q ss_pred             EEeeCcccccccccCCCCccCCCCc----eecCCCC-CChHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHhCCCCe
Q 048438           83 LWATNPEYLKNKATESKPVVDYKDW----QITLSRS-FRSLKLWFVIRNYGME-NLRHFLRSHVNMARLFERLVSGDKRF  156 (239)
Q Consensus        83 l~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~l~~~g~~-g~~~~~~~~~~la~~l~~~l~~~~g~  156 (239)
                      +++++ +.+...........++...    ....+-. +....+..+++.+... +++++.++..++++++.+.|++++++
T Consensus       207 l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  285 (362)
T 2c0r_A          207 VIVRE-DLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGF  285 (362)
T ss_dssp             EEEEG-GGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTS
T ss_pred             EEEcH-HHHhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            99854 3433221100011110000    0001111 1223444556554443 68888999999999999999998546


Q ss_pred             -EEEcCC---CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecC
Q 048438          157 -EVVFPC---HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGA  232 (239)
Q Consensus       157 -~~~~~~---~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~  232 (239)
                       ++..++   ..++++|.+++.                       .....+.+.|.++|......  ......+|+++++
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~L~~~gi~~~~g--~~~~~~iRis~~~  340 (362)
T 2c0r_A          286 YRGCVDVDSRSDMNITFRLASE-----------------------ELEKEFVKASEQEGFVGLKG--HRSVGGLRASIYN  340 (362)
T ss_dssp             SEESSCGGGBCSSEEEEECSCH-----------------------HHHHHHHHHHHHTTEESCBC--CTTTCSEEEECCT
T ss_pred             cccCCChHHcCCcEEEEEcCCc-----------------------chHHHHHHHHHHCCCeeccC--CCCCCEEEEECCC
Confidence             775432   345778887531                       11235666777777643321  1112469999988


Q ss_pred             CCCCc
Q 048438          233 TLTEE  237 (239)
Q Consensus       233 ~~t~~  237 (239)
                      ++|.+
T Consensus       341 ~~~~e  345 (362)
T 2c0r_A          341 AVPYE  345 (362)
T ss_dssp             TSCHH
T ss_pred             CCCHH
Confidence            77754

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=99.66  E-value=1.4e-15  Score=130.67  Aligned_cols=200  Identities=15%  Similarity=0.094  Sum_probs=128.9

Q ss_pred             CCccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCccccc--ccCCC-CCcceEEEcCcccCCCcc
Q 048438            2 GLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRH--FIDGV-EGADSFSLNAHKWFFATL   78 (239)
Q Consensus         2 g~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~--~~~~~-~~~Ds~~~~~hK~l~~P~   78 (239)
                      |..+.+|+.+..+|.+|.+.|+++|.++|++||+++++|++|+.+....+ ...  ...++ ...|+++.++||+++++.
T Consensus       173 ~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~~di~~~s~sK~~~g~~  251 (399)
T 3tqx_A          173 GARFKLIATDGVFSMDGIIADLKSICDLADKYNALVMVDDSHAVGFIGEN-GRGTPEYCGVADRVDILTGTLGKALGGAS  251 (399)
T ss_dssp             TCSSEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTT-SCCHHHHHTCTTCCSEEEEESSSSSCSSC
T ss_pred             CCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCC-CCchHHhhCCCCCCcEEEecchHhcccCc
Confidence            34688899999999999999999999999999999999999975543221 111  01121 248999999999998676


Q ss_pred             cceEEEeeCcccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438           79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE  157 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~  157 (239)
                      | |+++.+ ++.+.......      ..+....+.. .....+..+++.+. +..++..++..++.+++.+.|++. |++
T Consensus       252 g-G~~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~-g~~  321 (399)
T 3tqx_A          252 G-GYTSGH-KEIIEWLRNRS------RPYLFSNTVAPVIVATSLKVLELLK-TEGPQLRKQLQENSRYFRAGMEKL-GFQ  321 (399)
T ss_dssp             C-EEEEEC-HHHHHHHHHHC------HHHHSSCCCCHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHHH-TCC
T ss_pred             e-EEEEcC-HHHHHHHHHhC------cceeccCCCcHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHHHc-CCC
Confidence            6 776653 33333221100      0011111111 11122333344332 446777788889999999999887 777


Q ss_pred             EEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEE----ECCEeEEEEEecCC
Q 048438          158 VVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVV----LGGIYAIRFATGAT  233 (239)
Q Consensus       158 ~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~----~~g~~~lR~~~~~~  233 (239)
                      +. ++..+++.+.++..                       .....+.++|.++|.... +..    ..+..++|++++..
T Consensus       322 ~~-~~~~~~~~~~~~~~-----------------------~~~~~~~~~l~~~gi~v~-~~~~~~~~~~~~~iRi~~~~~  376 (399)
T 3tqx_A          322 LV-PGNHPIIPVMLGDA-----------------------QLATNMADHLLQEGIYVV-GFSYPVVPMGKARIRVQMSAV  376 (399)
T ss_dssp             BC-CCSSSEEEEEEECH-----------------------HHHHHHHHHHHHTTEECC-EECTTTSCTTCEEEEEECCTT
T ss_pred             cC-CCCCCEEEEEeCCH-----------------------HHHHHHHHHHHHCCCEEe-eeCCCCCCCCCceEEEEeecC
Confidence            66 66778888887641                       223467777877765544 322    23567999998766


Q ss_pred             CCCc
Q 048438          234 LTEE  237 (239)
Q Consensus       234 ~t~~  237 (239)
                      .|.+
T Consensus       377 ~~~~  380 (399)
T 3tqx_A          377 HTQQ  380 (399)
T ss_dssp             CCHH
T ss_pred             CCHH
Confidence            5544

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=99.65  E-value=6.2e-15  Score=128.49  Aligned_cols=199  Identities=16%  Similarity=0.048  Sum_probs=128.8

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCccccccc--CCC-CCcceEEEcCcccCCCcccc
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFI--DGV-EGADSFSLNAHKWFFATLDC   80 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~--~~~-~~~Ds~~~~~hK~l~~P~g~   80 (239)
                      .+.+|+++...+++|.+.|+++|.++|++||+++++|.+|+.+.+.- ..+...  .++ ..+|+++.++||+++ +.| 
T Consensus       194 ~~~~v~~~~~~n~tG~~~~l~~l~~l~~~~g~~li~Dea~~~~~~~~-~g~~~~~~~~~~~~~di~~~s~sK~~g-~~g-  270 (427)
T 2w8t_A          194 PAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGP-NGRGVYEAQGLEGQIDFVVGTFSKSVG-TVG-  270 (427)
T ss_dssp             SCEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSST-TSCCHHHHTTCTTCCSEEEEESSSTTC-SCC-
T ss_pred             CCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCC-CCCchHhhcCCCcCCcEEEecchhhhc-cCC-
Confidence            46778888888999999999999999999999999999999876531 111111  121 248999999999987 555 


Q ss_pred             eEEEeeCcccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Q 048438           81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVV  159 (239)
Q Consensus        81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~  159 (239)
                      |+++.+ ++.+.......      ..+....+.. .....+..+++.+.  .++++.++..++++++.+.|++. |+++.
T Consensus       271 G~v~~~-~~l~~~l~~~~------~~~~~~~~~~~~~~aa~~~al~~~~--~~~~~~~~~~~~~~~l~~~L~~~-g~~~~  340 (427)
T 2w8t_A          271 GFVVSN-HPKFEAVRLAC------RPYIFTASLPPSVVATATTSIRKLM--TAHEKRERLWSNARALHGGLKAM-GFRLG  340 (427)
T ss_dssp             EEEEEC-CTTGGGGGGTC------HHHHSSCCCCHHHHHHHHHHHHHHT--SCHHHHHHHHHHHHHHHHHHHHH-TCEES
T ss_pred             CEEEeC-HHHHHHHHHhc------ccccccCCCCHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHc-CCccc
Confidence            777764 34443322100      0011111111 11222234455432  23567777889999999999987 88887


Q ss_pred             cCC-CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEE---ECCEeEEEEEecCCCC
Q 048438          160 FPC-HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVV---LGGIYAIRFATGATLT  235 (239)
Q Consensus       160 ~~~-~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~---~~g~~~lR~~~~~~~t  235 (239)
                      .++ ..+++.+.+++                       ......+.+.|.++|........   ..+..++|++++..+|
T Consensus       341 ~~~~~~~~~~~~~~~-----------------------~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRi~~~~~~t  397 (427)
T 2w8t_A          341 TETCDSAIVAVMLED-----------------------QEQAAMMWQALLDGGLYVNMARPPATPAGTFLLRCSICAEHT  397 (427)
T ss_dssp             CSSCCSSEEEEEESS-----------------------HHHHHHHHHHHHHTTEECEEECTTTSCTTCEEEEEECCTTCC
T ss_pred             CCCCCCCEEEEEECC-----------------------HHHHHHHHHHHHHCCeEEeeeCCCCCCCCCeEEEEEeCCCCC
Confidence            555 67888888854                       12234677788777655443221   1345799999887776


Q ss_pred             CcC
Q 048438          236 EER  238 (239)
Q Consensus       236 ~~~  238 (239)
                      .+|
T Consensus       398 ~e~  400 (427)
T 2w8t_A          398 PAQ  400 (427)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            553

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=99.62  E-value=9e-17  Score=136.83  Aligned_cols=155  Identities=15%  Similarity=0.092  Sum_probs=104.8

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL   83 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l   83 (239)
                      .+.+|+++..+|.+|.+.|+++|.++|++||+++++|++|+.+..+.+     ...+ ++|++++++||++++|.++|++
T Consensus       147 ~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~-----~~~~-~~di~~~s~sK~~~~~~~~G~~  220 (371)
T 2e7j_A          147 EVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVS-----LKEI-GADFIVGSGHKSMAASGPIGVM  220 (371)
T ss_dssp             CEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBCCC-----HHHH-TCSEEEEEHHHHSSCCSSCEEE
T ss_pred             CeEEEEEECCCCCCcccCCHHHHHHHHHHcCCeEEEECccccCCCCCC-----hhhc-CCCEEEecCCcCCCCCCCcEEE
Confidence            567889999999999999999999999999999999999998765433     1112 3899999999999999999999


Q ss_pred             EeeCcccccc-cccCCCCccCCCCceecCCC-CCC-hHHHHHHHHHhCHHHHHHHHHHH--HHHHHHHHHHHhCCCCeEE
Q 048438           84 WATNPEYLKN-KATESKPVVDYKDWQITLSR-SFR-SLKLWFVIRNYGMENLRHFLRSH--VNMARLFERLVSGDKRFEV  158 (239)
Q Consensus        84 ~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~l~~~g~~g~~~~~~~~--~~la~~l~~~l~~~~g~~~  158 (239)
                      ++++ +.+.. .........  ....+..+. ... ...+..+++.+..    +..++.  .++++++.+.|++. ++++
T Consensus       221 ~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~~-~~~~  292 (371)
T 2e7j_A          221 GMKE-EWAEIVLRRSEKYKN--KEVELLGCTARGATIITLMASFPHVRE----RIKRWDEEVEKARRFAAEMEKL-GIKQ  292 (371)
T ss_dssp             EECT-TTTTTTTCBCSSCTT--SBGGGTTCCCCSHHHHHHHHHHHHHHH----HGGGHHHHHHHHHHHHHHHHHT-TCEE
T ss_pred             EEec-hhhhhhccccccCcc--cccccccCCcCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHc-CcEE
Confidence            9864 33333 221100000  000011111 111 1223334443322    455556  78899999999987 9998


Q ss_pred             EcCC--CeeEEEEEEc
Q 048438          159 VFPC--HFAVVCFRVS  172 (239)
Q Consensus       159 ~~~~--~~~iv~f~~~  172 (239)
                      +.++  ..++++|.++
T Consensus       293 ~~~~~~~~~~~~~~~~  308 (371)
T 2e7j_A          293 LGDNPHNHDLMFFHAE  308 (371)
T ss_dssp             ESSSSCCSSEEEEECH
T ss_pred             ecCCCccCceEEEECC
Confidence            8654  4778888764

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=99.61  E-value=1.2e-14  Score=126.15  Aligned_cols=160  Identities=11%  Similarity=0.136  Sum_probs=104.2

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc-ceE
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD-CCC   82 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g-~g~   82 (239)
                      .+.+|+++..+|.+|.+.|+++|+++|++||+++|+|++|+.+......    . .. ++|++++++||++++|.+ .|.
T Consensus       140 ~~~~v~~~~~~n~~G~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~----~-~~-~~di~~~S~~K~~~~~~~~~G~  213 (412)
T 2cb1_A          140 KTRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAGALCRP----L-AW-GAHVVVESLTKWASGHGSVLGG  213 (412)
T ss_dssp             TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGTTTTSCCG----G-GG-TCSEEEEETTTTTTCSSCCCCE
T ss_pred             CCeEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCCccccccCCc----c-cc-CCeEEEECCcccccCCCCcEEE
Confidence            3567888999999999999999999999999999999999877222211    1 11 399999999999999877 777


Q ss_pred             EEeeCccccc----ccccC--CC----------CccC-CCCce-ecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHH
Q 048438           83 LWATNPEYLK----NKATE--SK----------PVVD-YKDWQ-ITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMAR  144 (239)
Q Consensus        83 l~~~~~~~l~----~~~~~--~~----------~~~~-~~~~~-~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~  144 (239)
                      +++.++....    .....  .+          ...+ ...+. ...+....+...+..+..  .+.+.+++++..++++
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~--l~~l~~~~~~~~~~~~  291 (412)
T 2cb1_A          214 AVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVRTLGLSLCGMALSPFNAYLLFQG--LETVALRVARMSETAR  291 (412)
T ss_dssp             EEEECCCSGGGGSGGGGCC-------HHHHGGGHHHHHHHHHHTTTTCCCCCHHHHHHHHHH--GGGHHHHHHHHHHHHH
T ss_pred             EEEeccccccccccccccccccccchhhccchHHHHHHHHHHHHHhcCCCCChHHhHHHHcC--CchHHHHHHHHHHHHH
Confidence            7775532100    00000  00          0000 00000 001222334444444433  3455677777889999


Q ss_pred             HHHHHHhCCCCeEEEc-C----------------CCeeEEEEEE
Q 048438          145 LFERLVSGDKRFEVVF-P----------------CHFAVVCFRV  171 (239)
Q Consensus       145 ~l~~~l~~~~g~~~~~-~----------------~~~~iv~f~~  171 (239)
                      ++.+.|.+.++++++. |                ...++++|.+
T Consensus       292 ~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~  335 (412)
T 2cb1_A          292 FLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPILTLDL  335 (412)
T ss_dssp             HHHHHHHTCTTCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEEC
T ss_pred             HHHHHHHcCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEe
Confidence            9999999988988552 2                1357999999

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}

Probab=99.61  E-value=3.2e-15  Score=131.23  Aligned_cols=189  Identities=12%  Similarity=0.008  Sum_probs=116.9

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLW   84 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~   84 (239)
                      +.+|+++. +|.+|.+.|+++|+++|++||+++|+|+||++ .+.+.........+ ++|+++.|+||++++|.|+|+++
T Consensus       147 ~~~v~~~~-~n~~G~~~~l~~I~~l~~~~~~~livDea~~~-~~~f~~~~~~~~~~-g~Di~~~S~~K~l~~~~g~g~l~  223 (446)
T 2x3l_A          147 HKLVVLTY-PNYYGETFNVEEVIKSLHQLNIPVLIDEAHGA-HFGLQGFPDSTLNY-QADYVVQSFHKTLPALTMGSVLY  223 (446)
T ss_dssp             CCEEEEES-SCTTSCCCCHHHHHHHHHHTTCCEEEECTTCT-TTTSTTSCCCGGGG-TCSEEEECHHHHSSSCTTCEEEE
T ss_pred             ceEEEEEC-CCCCeEecCHHHHHHHHHhcCCeEEEcchhhh-hhccCCCCCChHHc-CCCEEEECCccccccccccEEEE
Confidence            45677777 67799999999999999999999999999987 34222110001112 38999999999999999999999


Q ss_pred             eeCccccc--ccccCCCCccCCCCceecCCCC-CCh-HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc
Q 048438           85 ATNPEYLK--NKATESKPVVDYKDWQITLSRS-FRS-LKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF  160 (239)
Q Consensus        85 ~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~  160 (239)
                      +++. .+.  .....        ......+.. ... ..+..+++.+...+.++..++..++++++++.     |++++.
T Consensus       224 ~~~~-~i~~~~~~~~--------~~~~~~~s~~~~~~aal~~a~~~l~~~g~~~~~~~~~~l~~~l~~~-----g~~~~~  289 (446)
T 2x3l_A          224 IHKN-APYRENIIEY--------LSYFQTSSPSYLIMASLESAAQFYKTYDSTLFFAKRAQLIECLENK-----GFEMLQ  289 (446)
T ss_dssp             EETT-CTTHHHHHHH--------HHHHSCSSCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-----TCEEEE
T ss_pred             EcCC-cCCHHHHHHH--------HHHHcCCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHc-----CCEECc
Confidence            8653 322  11000        000111111 111 23333444443333344666777888888777     788776


Q ss_pred             CCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCCcC
Q 048438          161 PCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTEER  238 (239)
Q Consensus       161 ~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~  238 (239)
                      +...+.+.|.+++..                        ...+.+.|.++|.. +.   ..|...+|++++..+|.+|
T Consensus       290 ~~~~~~l~i~~~~~~------------------------~~~l~~~L~~~GI~-v~---~~g~~~iRi~~~~~~t~e~  339 (446)
T 2x3l_A          290 VDDPLKLLIKYEGFT------------------------GHDIQNWFMNAHIY-LE---LADDYQALAILPLWHHDDT  339 (446)
T ss_dssp             CSSTTEEEEECTTSC------------------------HHHHHHHHHHTTEE-ES---EECSSCEEEECCCCCTTCC
T ss_pred             CCCCeEEEEEeCCcC------------------------HHHHHHHHHHCCCE-EE---ecCCCEEEEEeecCCCHHH
Confidence            543345677765321                        11466677777544 32   1245689999887666654

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=99.61  E-value=1.5e-15  Score=134.26  Aligned_cols=201  Identities=16%  Similarity=0.129  Sum_probs=122.9

Q ss_pred             cEEEEEecCCCCcccc-cChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcc-----
Q 048438            5 PLFLCATIGTTAITAV-DPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATL-----   78 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i-~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~-----   78 (239)
                      +.+|+++.. |.+|.+ +|+++|+++|++||+++|+|++|+.+.+..  .+  ...+ ++|++++++||++++|.     
T Consensus       204 t~~v~~~~p-n~~G~~~~~l~~i~~l~~~~g~~li~Dea~~~~~~g~--~~--~~~~-g~di~~~s~~K~~~~p~g~gG~  277 (474)
T 1wyu_B          204 VAALMLTNP-NTLGLFERRILEISRLCKEAGVQLYYDGANLNAIMGW--AR--PGDM-GFDVVHLNLHKTFTVPHGGGGP  277 (474)
T ss_dssp             EEEEEECSS-CTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTTTT--CC--HHHH-TCSEEECCTTTTTCCCCTTSCC
T ss_pred             ceEEEEECC-CCCcccCCCHHHHHHHHHHcCCEEEEeCchhhhhccC--CC--cccC-CCcEEEEeCccccccCCCCCCC
Confidence            456677775 569998 899999999999999999999997665411  11  1111 39999999999999996     


Q ss_pred             cceEEEeeCccccccccc-----CC-CCccCCC------CceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Q 048438           79 DCCCLWATNPEYLKNKAT-----ES-KPVVDYK------DWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLF  146 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~-----~~-~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l  146 (239)
                      ++|++++++ ..+.....     .. ....++.      ......+........|..++.+|.+++++..++..++++++
T Consensus       278 ~~G~~~~~~-~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l  356 (474)
T 1wyu_B          278 GSGPVGVKA-HLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYL  356 (474)
T ss_dssp             CCCCEEECG-GGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEEcH-HHHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            589999865 33322210     00 0000000      00000000011244455566677888989899999999999


Q ss_pred             HHHHhCCCCeEEEcCC-CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEEC--CE
Q 048438          147 ERLVSGDKRFEVVFPC-HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLG--GI  223 (239)
Q Consensus       147 ~~~l~~~~g~~~~~~~-~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~--g~  223 (239)
                      .+.|++. |+++..+. ..+...+.++ .+.                      ....+.++|.++|... ......  ..
T Consensus       357 ~~~L~~~-g~~~~~~~~~~~~~~~~~~-~~~----------------------~~~~l~~~L~~~Gi~~-~~~~~~~~~~  411 (474)
T 1wyu_B          357 KELLKEK-GYRVPYDGPSMHEFVAQPP-EGF----------------------RALDLAKGLLELGFHP-PTVYFPLIVK  411 (474)
T ss_dssp             HHHHHHT-TCBCSSCSSCCSCEEEBCS-TTC----------------------CHHHHHHHHHHTTCCC-CEESCSTTST
T ss_pred             HHHHhhc-CcEecCCCCcceEEEEEcC-CCC----------------------CHHHHHHHHHHCCccc-cccccccccC
Confidence            9999987 88874332 2321223332 111                      0125666777777653 211111  24


Q ss_pred             eEEEEEecCCCCCc
Q 048438          224 YAIRFATGATLTEE  237 (239)
Q Consensus       224 ~~lR~~~~~~~t~~  237 (239)
                      .++|+++...+|.+
T Consensus       412 ~~lRis~~~~~t~e  425 (474)
T 1wyu_B          412 EALMVEPTETEAKE  425 (474)
T ss_dssp             TCEEECCCTTSCHH
T ss_pred             CEEEEEeecCCCHH
Confidence            68999988766654

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*

Probab=99.60  E-value=1.9e-15  Score=133.93  Aligned_cols=159  Identities=8%  Similarity=0.046  Sum_probs=102.0

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLW   84 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~   84 (239)
                      |-+|++ +.++.+ .+.|+++|+++|+++|+++++|+||+.+.+..+.....+.   .+|++++++||+|.+|.| |+++
T Consensus       194 tklIi~-~~sn~~-~~~dl~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~---~~div~~s~~K~l~Gprg-G~i~  267 (483)
T 1rv3_A          194 PKLIIA-GTSCYS-RNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE---HCHVVTTTTHKTLRGCRA-GMIF  267 (483)
T ss_dssp             CSEEEE-CCSSCC-SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG---TCSEEEEESSGGGCCCSC-EEEE
T ss_pred             CcEEEE-eCCcCC-CcCCHHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCC---CCcEEEecCcccCCCCCc-eEEE
Confidence            556666 556666 8999999999999999999999999877664432211121   489999999999999998 9999


Q ss_pred             eeCcccccccccCCCC--ccCCC---Cce-ec--CCCC-C-ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 048438           85 ATNPEYLKNKATESKP--VVDYK---DWQ-IT--LSRS-F-RSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK  154 (239)
Q Consensus        85 ~~~~~~l~~~~~~~~~--~~~~~---~~~-~~--~~~~-~-~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~  154 (239)
                      +++. ... .....+.  ..+..   ... ..  .+.. . ...++..+++.+...+++++.++..++++++.+.|.+. 
T Consensus       268 ~~~~-~~~-~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-  344 (483)
T 1rv3_A          268 YRRG-VRS-VDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVEL-  344 (483)
T ss_dssp             EECS-BCC--------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             Ecch-hhh-hccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhc-
Confidence            8753 211 0000000  00000   000 00  1111 1 12344456666555678888999999999999999987 


Q ss_pred             CeEEEcCC-CeeEEEEEEc
Q 048438          155 RFEVVFPC-HFAVVCFRVS  172 (239)
Q Consensus       155 g~~~~~~~-~~~iv~f~~~  172 (239)
                      |++++.+. ....+.+.+.
T Consensus       345 g~~~~~~~~~~~~~~v~~~  363 (483)
T 1rv3_A          345 GYKIVTGGSDNHLILVDLR  363 (483)
T ss_dssp             TCEEGGGSCSSSEEEEEGG
T ss_pred             CCEeccCCCCCceEEEecc
Confidence            99987653 2234445554

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=99.60  E-value=8.1e-15  Score=126.24  Aligned_cols=199  Identities=16%  Similarity=0.052  Sum_probs=124.3

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccc-cCcccccccCCC-CCcceEEEcCcccCCCcccce
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSAC-IFPEFRHFIDGV-EGADSFSLNAHKWFFATLDCC   81 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~-~~~~~~~~~~~~-~~~Ds~~~~~hK~l~~P~g~g   81 (239)
                      .+.+|+++..+|.+|.+.|+++|.++|++||+++++|++|+.+.. .....-....++ ..+|+++.++||+++++.| |
T Consensus       177 ~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~di~~~s~sK~~~~~~g-G  255 (401)
T 1fc4_A          177 RHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGASG-G  255 (401)
T ss_dssp             SSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSSC-E
T ss_pred             CceEEEEeCCcCCCCCCCCHHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCCCcCCcEEEecchhhccCCCC-E
Confidence            577888888899999999999999999999999999999975543 111000001121 2479999999999966666 7


Q ss_pred             EEEeeCcccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc
Q 048438           82 CLWATNPEYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF  160 (239)
Q Consensus        82 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~  160 (239)
                      +++. +++.+.......      ..+....+.. .....+..+++.+.  ..++..++..++++++.+.|++. |++++ 
T Consensus       256 ~~~~-~~~~~~~l~~~~------~~~~~~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-  324 (401)
T 1fc4_A          256 YTAA-RKEVVEWLRQRS------RPYLFSNSLAPAIVAASIKVLEMVE--AGSELRDRLWANARQFREQMSAA-GFTLA-  324 (401)
T ss_dssp             EEEE-CHHHHHHHHHHC------HHHHHSCCCCHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHHHT-TCCBC-
T ss_pred             EEEc-CHHHHHHHHHhC------cCceeCCCCCHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHc-CCccc-
Confidence            7776 344433221100      0011111111 11122223344321  13566777889999999999987 78766 


Q ss_pred             CCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEE---ECCEeEEEEEecCCCCCc
Q 048438          161 PCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVV---LGGIYAIRFATGATLTEE  237 (239)
Q Consensus       161 ~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~---~~g~~~lR~~~~~~~t~~  237 (239)
                      ++..+++.+.+++.                       .....+.+.|.++|........   ..+..++|+++....|.+
T Consensus       325 ~~~~~~~~~~~~~~-----------------------~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~  381 (401)
T 1fc4_A          325 GADHAIIPVMLGDA-----------------------VVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPE  381 (401)
T ss_dssp             CSSSSEEEEEEECH-----------------------HHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEECCTTCCHH
T ss_pred             CCCCCEEEEEcCCh-----------------------HHHHHHHHHHHHCCcEEeeecCCCCCCCCceEEEEeCCCCCHH
Confidence            56778888887531                       1223567777777655433221   123578999987666654

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=99.60  E-value=9.1e-15  Score=123.64  Aligned_cols=192  Identities=11%  Similarity=0.080  Sum_probs=119.3

Q ss_pred             CccEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEeccccc---ccccCcccccccCCCCCcceEEEcCcccCCC
Q 048438            3 LIPLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAG---SACIFPEFRHFIDGVEGADSFSLNAHKWFFA   76 (239)
Q Consensus         3 ~~p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~---~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~   76 (239)
                      ..|.+|+++.. |.+|.+.|   +++|.++|++||+++|+|++|..   +....+. ....-. ..+|++++++||+ ++
T Consensus       144 ~~~~~v~~~~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~-~~~~~~-~~~d~~~~s~~K~-g~  219 (359)
T 1svv_A          144 VIPKLVYISNT-TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDL-TLADIA-RLTDMFYIGATKA-GG  219 (359)
T ss_dssp             CEEEEEEEESS-CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCC-CHHHHH-HHCSEEEEECTTT-TC
T ss_pred             CCceEEEEEcC-CCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcch-hhhhhh-hcCCEEEEecccC-CC
Confidence            34677777776 67999998   99999999999999999999933   3322210 100000 1389999999998 56


Q ss_pred             cccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCe
Q 048438           77 TLDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRF  156 (239)
Q Consensus        77 P~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~  156 (239)
                      |.|+|+++++ ++.+......    .....+....+.+ ....   ....+..+++++..++..++++++.+.| +.+|+
T Consensus       220 ~~~~g~l~~~-~~~~~~~~~~----~~~~~~~~~~~~~-~~~~---~~~~l~~~~~~~~~~~~~~~~~~l~~~L-~~~~~  289 (359)
T 1svv_A          220 MFGEALIILN-DALKPNARHL----IKQRGALMAKGWL-LGIQ---FEVLMKDNLFFELGAHSNKMAAILKAGL-EACGI  289 (359)
T ss_dssp             SSCEEEEECS-GGGCTTHHHH----HHHTTCCCTTTHH-HHHH---HHHHTSTTHHHHHHHHHHHHHHHHHHHH-HHTTC
T ss_pred             CCceEEEEEc-ccHHHHHHHH----HhcCCcccccchh-hHHH---HHHHHhhhhHHHHHHHHHHHHHHHHHHh-ccCCe
Confidence            8888988874 3443322110    0000000000000 0111   1223444567778888899999999999 55788


Q ss_pred             EEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhc-CcEEEEEEEECCEeEEEEEecCCCC
Q 048438          157 EVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINAS-GKAYMTNVVLGGIYAIRFATGATLT  235 (239)
Q Consensus       157 ~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~g~~~lR~~~~~~~t  235 (239)
                      +++.+...+++.+.++.                            .+.++|.++ |.... .....+..++|++++...|
T Consensus       290 ~~~~~~~~~~~~~~~~~----------------------------~~~~~l~~~~gi~v~-~~~~~~~~~iRi~~~~~~~  340 (359)
T 1svv_A          290 RLAWPSASNQLFPILEN----------------------------TMIAELNNDFDMYTV-EPLKDGTCIMRLCTSWATE  340 (359)
T ss_dssp             CBSSCCSSSEECBEEEH----------------------------HHHHHHTTTEECEEE-EEETTTEEEEEEECCTTCC
T ss_pred             EEccCCccceEEEEcCH----------------------------HHHHHHHHhcCEEEE-ecccCCCceEEEEccCcCC
Confidence            87766666666655431                            566778777 66552 2222467899999665555


Q ss_pred             Cc
Q 048438          236 EE  237 (239)
Q Consensus       236 ~~  237 (239)
                      .+
T Consensus       341 ~~  342 (359)
T 1svv_A          341 EK  342 (359)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=99.58  E-value=8.1e-15  Score=136.17  Aligned_cols=152  Identities=13%  Similarity=0.063  Sum_probs=100.8

Q ss_pred             CCccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCC--cce------EEEcCccc
Q 048438            2 GLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEG--ADS------FSLNAHKW   73 (239)
Q Consensus         2 g~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~--~Ds------~~~~~hK~   73 (239)
                      |..|.+|+++.. |.+|.+.|+++|+++|++||+++|||+||+++....+.++. ...+.+  +|+      ++.|+||+
T Consensus       310 ~~~~klvil~~p-n~~G~v~dl~~I~~ia~~~~~~livDeA~~~~~~~~~~~~~-~~~~~g~~aD~~~~~~iv~~S~hK~  387 (755)
T 2vyc_A          310 GQKPSYCVVTNC-TYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYAD-HYAMRGEPGDHNGPTVFATHSTHKL  387 (755)
T ss_dssp             TCCCSCEEEESS-CTTSEEECHHHHHHHHTTTCSEEEEECTTCTTGGGCGGGTT-SSSSCSCCCCCSSBEEEEEEETTTS
T ss_pred             cCCCeEEEEECC-CCCceecCHHHHHHHHHHcCCEEEEECcCchhcccCcccCC-cchhcCCcCCccCCCeEEEECcccc
Confidence            456667777775 68999999999999999999999999999865433332211 011123  677      99999999


Q ss_pred             CCCcccceEEEeeCcc-cccccccCCCCccCCCCceecCCCCC--ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Q 048438           74 FFATLDCCCLWATNPE-YLKNKATESKPVVDYKDWQITLSRSF--RSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLV  150 (239)
Q Consensus        74 l~~P~g~g~l~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l  150 (239)
                      +++|.++|++++++.. ++......  ...    ...+.+.+.  ...++-.+++.+..++.++++++..++++++++.|
T Consensus       388 L~g~~~g~~i~~~~~~~~i~~~~~~--~~~----~~~~s~sp~~~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L  461 (755)
T 2vyc_A          388 LNALSQASYIHVREGRGAINFSRFN--QAY----MMHATTSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAM  461 (755)
T ss_dssp             SSCCTTCEEEEEECCBTCCCHHHHH--HHH----HHTSCSSCCHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCcCCeeeeeecCcccccCHHHHH--HHH----HHhCCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999886541 22100000  000    011111221  12334445666655655778899999999999999


Q ss_pred             hCCCC---------eEEEcC
Q 048438          151 SGDKR---------FEVVFP  161 (239)
Q Consensus       151 ~~~~g---------~~~~~~  161 (239)
                      +++++         ++++.+
T Consensus       462 ~~l~~~~~~~~~~~~~~~~~  481 (755)
T 2vyc_A          462 ARLYKEFTADGSWFFKPWNK  481 (755)
T ss_dssp             HHHHHHHHTTTCCCCEESSC
T ss_pred             HhccccccccccceeeccCc
Confidence            98877         877765

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=99.57  E-value=1.2e-14  Score=125.24  Aligned_cols=192  Identities=15%  Similarity=0.084  Sum_probs=120.5

Q ss_pred             EEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEEe
Q 048438            6 LFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWA   85 (239)
Q Consensus         6 ~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~   85 (239)
                      -+|++  .++..|.+.|+++|.++|++||+++++|++|+.|........   ..++.+|+++.++||++.+|.+ |++++
T Consensus       165 ~~v~~--~~p~~~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~---~~~~~~di~~~s~sK~l~g~~~-G~~~~  238 (407)
T 2dkj_A          165 KVIVA--GASAYPRFWDFKAFREIADEVGAYLVVDMAHFAGLVAAGLHP---NPLPYAHVVTSTTHKTLRGPRG-GLILS  238 (407)
T ss_dssp             SEEEE--CCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSC---CCTTTCSEEEEESSGGGCCCSC-EEEEE
T ss_pred             eEEEE--eccccCCCCCHHHHHHHHHHcCCEEEEEccccccccccCccC---CccccccEEEEeccccCCCCCc-eEEEE
Confidence            34444  333446889999999999999999999999988655433211   1122489999999999998887 88887


Q ss_pred             eCcccccccccCCCCccCCCCceecCCCCC-ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcC-CC
Q 048438           86 TNPEYLKNKATESKPVVDYKDWQITLSRSF-RSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFP-CH  163 (239)
Q Consensus        86 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~-~~  163 (239)
                      ++++.........      ..+.. .+... ....+..+++.+..+++++..++..++++++.+.|++. |++++.+ ..
T Consensus       239 ~~~~~~~~l~~~~------~~~~~-~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~  310 (407)
T 2dkj_A          239 NDPELGKRIDKLI------FPGIQ-GGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARR-GYRIVTGGTD  310 (407)
T ss_dssp             SCHHHHHHHHHHH------TTTTC-SSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCS
T ss_pred             CCHHHHHHHHhhh------ccccc-CCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhC-CceeecCCCC
Confidence            6444433221100      00100 01111 11233445554433577888888999999999999987 8988764 46


Q ss_pred             eeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEE------ECCEeEEEEEecCC
Q 048438          164 FAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVV------LGGIYAIRFATGAT  233 (239)
Q Consensus       164 ~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~------~~g~~~lR~~~~~~  233 (239)
                      .+++++.++..+.               +       ...+.+.|.++|........      .....++|+++..+
T Consensus       311 ~~~~~~~~~~~~~---------------~-------~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~  364 (407)
T 2dkj_A          311 NHLFLVDLRPKGL---------------T-------GKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAI  364 (407)
T ss_dssp             SSEEEEECGGGTC---------------C-------HHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHH
T ss_pred             ceEEEEECcccCC---------------C-------HHHHHHHHHHcCceecCCcCccccccccCCCceeeecccc
Confidence            7788888864211               0       12456667666655443221      11245799998654

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=99.56  E-value=1.2e-14  Score=123.79  Aligned_cols=149  Identities=13%  Similarity=0.110  Sum_probs=90.4

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLW   84 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~   84 (239)
                      +.+|+.++.   +|.+.|+++|.++|++||+++++|++|+.+.....  + .+..+..+++.++++||++ +| |.|.++
T Consensus       122 ~~~v~~~~~---tG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~--~-~~~~~~~i~~~s~s~~K~~-~~-g~g~~~  193 (375)
T 2fnu_A          122 TKAIVSVDY---AGKSVEVESVQKLCKKHSLSFLSDSSHALGSEYQN--K-KVGGFALASVFSFHAIKPI-TT-AEGGAV  193 (375)
T ss_dssp             EEEEEEECG---GGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETT--E-ETTSSSSEEEEECCTTSSS-CC-SSCEEE
T ss_pred             ceEEEEeCC---cCCccCHHHHHHHHHHcCCEEEEECccccCCeECC--e-eccccCCeEEEeCCCCCCc-cc-cCceEE
Confidence            344555544   89999999999999999999999999988765422  1 1222223777788888997 56 889888


Q ss_pred             ee-Cccccccccc-CCCCccCCCCceec---CCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Q 048438           85 AT-NPEYLKNKAT-ESKPVVDYKDWQIT---LSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVV  159 (239)
Q Consensus        85 ~~-~~~~l~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~  159 (239)
                      +. +++....... ......+...+.++   .+.++....+..++.....+.++++.++..++++++.+.|++++++++.
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~  273 (375)
T 2fnu_A          194 VTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLKKAPFLMQKREEAALTYDRIFKDNPYFTPL  273 (375)
T ss_dssp             EESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCSSEEES
T ss_pred             EeCCHHHHHHHHHHHhcCCccccccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Confidence            84 3433221110 00000000011111   1111122222222222224566788888899999999999998899887


Q ss_pred             cC
Q 048438          160 FP  161 (239)
Q Consensus       160 ~~  161 (239)
                      .+
T Consensus       274 ~~  275 (375)
T 2fnu_A          274 HP  275 (375)
T ss_dssp             GG
T ss_pred             CC
Confidence            54

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A

Probab=99.55  E-value=5.1e-14  Score=124.75  Aligned_cols=156  Identities=10%  Similarity=0.043  Sum_probs=97.5

Q ss_pred             CCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEEeeCccccc
Q 048438           13 GTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWATNPEYLK   92 (239)
Q Consensus        13 gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~l~   92 (239)
                      +.+..|...|+++|+++|++||+++|+|+||+.+.+........+.   .+|++++++||+|++|.| |+++.++. ...
T Consensus       210 ~~s~~~~~~dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~---~aDiv~~S~hK~l~Gp~G-G~i~~~~~-~~~  284 (490)
T 2a7v_A          210 GTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK---HADIVTTTTHKTLRGARS-GLIFYRKG-VKA  284 (490)
T ss_dssp             CCSSCCSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG---TCSEEEEESSGGGCSCSC-EEEEEECS-EEE
T ss_pred             cCCCCCCcccHHHHHHHHHHcCCEEEEccccccccccCCcCCCCCC---CCCEEEECCcccCccccc-hheeeccc-hhc
Confidence            4455678889999999999999999999999876543221111122   499999999999999987 77777653 110


Q ss_pred             --c-----cccCCCCccCCC-CceecCCCCCC-hHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcC-C
Q 048438           93 --N-----KATESKPVVDYK-DWQITLSRSFR-SLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFP-C  162 (239)
Q Consensus        93 --~-----~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~-~  162 (239)
                        .     ........++.. ....+++.... ..++..+++..-.+.++++.++..++++++.+.|.+. |++++.+ .
T Consensus       285 ~~~~~~~~~~~~l~~~i~~~~~~g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~~-G~~v~~~~t  363 (490)
T 2a7v_A          285 VDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER-GYSLVSGGT  363 (490)
T ss_dssp             EETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSC
T ss_pred             ccccccchhhHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHc-CcEEecCCC
Confidence              0     000000000000 00011111111 2233334444323456778888999999999999986 9998753 4


Q ss_pred             CeeEEEEEEcCC
Q 048438          163 HFAVVCFRVSPL  174 (239)
Q Consensus       163 ~~~iv~f~~~~~  174 (239)
                      +++++.+.+.+.
T Consensus       364 ~t~lv~vdl~~~  375 (490)
T 2a7v_A          364 DNHLVLVDLRPK  375 (490)
T ss_dssp             SSSEEEEECTTT
T ss_pred             CCeEEEEEeCCC
Confidence            577888887654

>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*

Probab=99.53  E-value=1.5e-14  Score=122.63  Aligned_cols=194  Identities=11%  Similarity=0.040  Sum_probs=118.9

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL   83 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l   83 (239)
                      .+-+|+.++.+|.+|.+.|  +|   +++||+++++|++|+.+..+.+     +..   .|++++++||+++ |.|+|++
T Consensus       141 ~~k~v~~~~~~nptG~~~~--~i---~~~~~~~li~D~a~~~~~~~~~-----~~~---~di~~~s~sK~~~-~~G~G~~  206 (360)
T 1w23_A          141 NDAYLHITSNNTIYGTQYQ--NF---PEINHAPLIADMSSDILSRPLK-----VNQ---FGMIYAGAQKNLG-PSGVTVV  206 (360)
T ss_dssp             TEEEEEEESEETTTTEECS--SC---CCCCSSCEEEECTTTTTSSCCC-----GGG---CSEEEEETTTTTS-CTTCEEE
T ss_pred             CCCEEEEeCCCCCcceecc--cc---cccCCceEEEechhhcCCCCcC-----ccc---CCEEEEEcccccC-CCCcEEE
Confidence            3667888888999999865  33   3389999999999998766543     222   4899999999875 7799999


Q ss_pred             EeeCcccccccccCCCCccCCCC---ceecCCCC--CChHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHhCCCCe-
Q 048438           84 WATNPEYLKNKATESKPVVDYKD---WQITLSRS--FRSLKLWFVIRNYGME-NLRHFLRSHVNMARLFERLVSGDKRF-  156 (239)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~l~~~g~~-g~~~~~~~~~~la~~l~~~l~~~~g~-  156 (239)
                      ++++ +.+.......+...+...   .....+..  ...+.+..+++.+... +++++.++..++++++.+.|++++++ 
T Consensus       207 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~  285 (360)
T 1w23_A          207 IVKK-DLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFY  285 (360)
T ss_dssp             EEEH-HHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSS
T ss_pred             EEcH-HHHhhcccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHccCcc
Confidence            9864 333322111001110000   00001111  1113344455554334 67888889999999999999998665 


Q ss_pred             EEEcCC--Cee-EEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCC
Q 048438          157 EVVFPC--HFA-VVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGAT  233 (239)
Q Consensus       157 ~~~~~~--~~~-iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~  233 (239)
                      ....++  ..+ ++.|.+++.                       .....+.+.|.++|.......  ....++|++++..
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~l~~~gi~~~~~~--~~~~~iRis~~~~  340 (360)
T 1w23_A          286 VGHAEKGSRSLMNVTFNLRNE-----------------------ELNQQFLAKAKEQGFVGLNGH--RSVGGCRASIYNA  340 (360)
T ss_dssp             EESSCGGGBCSSEEEEECSSH-----------------------HHHHHHHHHHHHTTEESCBCC--TTTCSEEEECCTT
T ss_pred             cccCCchhccCcEEEEEcCCC-----------------------ccHHHHHHHHHHCCeeeecCC--CCCCeEEEEecCC
Confidence            554222  345 888887531                       112356666776665543211  1135799999877


Q ss_pred             CCCc
Q 048438          234 LTEE  237 (239)
Q Consensus       234 ~t~~  237 (239)
                      +|.+
T Consensus       341 ~~~~  344 (360)
T 1w23_A          341 VPID  344 (360)
T ss_dssp             SCHH
T ss_pred             CCHH
Confidence            6654

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=99.53  E-value=4.5e-14  Score=121.54  Aligned_cols=185  Identities=12%  Similarity=0.082  Sum_probs=116.2

Q ss_pred             CCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEEeeCcccccc
Q 048438           14 TTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWATNPEYLKN   93 (239)
Q Consensus        14 tt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~l~~   93 (239)
                      .+..|...|+++|.++|++||+++++|++|+.+....+...   ..+..+|+++.++||++++|.| |+++++ ++....
T Consensus       171 ~~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~---~~~~~~di~~~s~sK~~~g~~g-G~~~~~-~~~~~~  245 (405)
T 2vi8_A          171 AAAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHP---NPVPYAHFVTTTTHKTLRGPRG-GMILCQ-EQFAKQ  245 (405)
T ss_dssp             CSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSC---CSTTTCSEEEEESSSTTCCCSC-EEEEEC-HHHHHH
T ss_pred             CCCCCccCCHHHHHHHHHHcCCEEEEEccccccccccCcCC---CccccCCEEEEeccccCCCCCC-eEEEEc-HHHHHH
Confidence            35568888999999999999999999999986654332111   1122489999999999988888 888875 443322


Q ss_pred             cccCCCCccCCCCceecCCCCC-ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcC-CCeeEEEEEE
Q 048438           94 KATESKPVVDYKDWQITLSRSF-RSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFP-CHFAVVCFRV  171 (239)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~-~~~~iv~f~~  171 (239)
                      .....      ..+.. ++... ....+..+++.+..+++++..++..++++++.+.|++. |++++.+ ...+++.+.+
T Consensus       246 l~~~~------~~~~~-~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~  317 (405)
T 2vi8_A          246 IDKAI------FPGIQ-GGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE-GFTLVSGGTDNHLLLVDL  317 (405)
T ss_dssp             HHHHH------TTTTC-SSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEEC
T ss_pred             HHhhh------ccccc-CCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC-CCeEecCCCCceEEEEEc
Confidence            11100      00110 11111 12233344554333567888888999999999999987 8998765 3577888887


Q ss_pred             cCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEE------EECCEeEEEEEecCC
Q 048438          172 SPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNV------VLGGIYAIRFATGAT  233 (239)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~------~~~g~~~lR~~~~~~  233 (239)
                      +..+.               +       ...+.+.|.++|.......      ...+...+|+++..+
T Consensus       318 ~~~~~---------------~-------~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~~  363 (405)
T 2vi8_A          318 RPQQL---------------T-------GKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAV  363 (405)
T ss_dssp             GGGTC---------------C-------HHHHHHHHHHHTEECEEECCTTCSSCTTTCSEEEEECHHH
T ss_pred             cCCCC---------------C-------HHHHHHHHHHcCceeccCcCccccCCCCCCCceEEeeeee
Confidence            64211               0       1245556666665544322      011235799998763

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=99.53  E-value=1e-13  Score=118.63  Aligned_cols=195  Identities=13%  Similarity=0.042  Sum_probs=122.3

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCccccc--ccCCCCCcceEEEcCcccCCCcccceE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRH--FIDGVEGADSFSLNAHKWFFATLDCCC   82 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~--~~~~~~~~Ds~~~~~hK~l~~P~g~g~   82 (239)
                      +.+|+....++.+|.+.|+++|.++|++||+++++|++|+.+...- ....  ...+. ..|+++.++||+++ |.| |+
T Consensus       169 ~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~-~~di~~~s~sK~~~-~~G-G~  244 (384)
T 1bs0_A          169 QQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGE-QGRGSCWLQKV-KPELLVVTFGKGFG-VSG-AA  244 (384)
T ss_dssp             CEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSG-GGCCHHHHTTC-CCSEEEEESSSTTS-SCC-EE
T ss_pred             CeEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCcccceecC-CCCchHHhcCC-CCcEEEeeccchhh-ccC-cE
Confidence            5677777788999999999999999999999999999998664320 0000  01122 48999999999986 666 87


Q ss_pred             EEeeCcccccccccCCCCccCCCCceecCCCCCChH---HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Q 048438           83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSL---KLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVV  159 (239)
Q Consensus        83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~  159 (239)
                      ++.+ ++.+.......      ..+.  .+.....+   .+..+++.+.....++..++..++++++.+.|++. ++++.
T Consensus       245 ~~~~-~~~~~~l~~~~------~~~~--~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~  314 (384)
T 1bs0_A          245 VLCS-STVADYLLQFA------RHLI--YSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDL-PFTLA  314 (384)
T ss_dssp             EEEC-HHHHHHHHHHC------HHHH--SSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTS-SCEEC
T ss_pred             EEeC-HHHHHHHHHhc------hhhh--cCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhc-CCccc
Confidence            7774 44433221100      0011  11111222   22334444321144577788889999999999987 78875


Q ss_pred             cCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEE---ECCEeEEEEEecCCCCC
Q 048438          160 FPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVV---LGGIYAIRFATGATLTE  236 (239)
Q Consensus       160 ~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~---~~g~~~lR~~~~~~~t~  236 (239)
                       ++..+++.+.++..                       .....+.+.|.++|........   ..+..++|++++..+|.
T Consensus       315 -~~~~~~~~~~~~~~-----------------------~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~Ri~~~~~~~~  370 (384)
T 1bs0_A          315 -DSCSAIQPLIVGDN-----------------------SRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEM  370 (384)
T ss_dssp             -SCCSSBCCEEEESH-----------------------HHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCCTTCCH
T ss_pred             -CCCCCEEEEEeCCH-----------------------HHHHHHHHHHHHCCcEEEeecCCCCCCCCceEEEEEcCCCCH
Confidence             45567777777531                       1223667777777654433221   12457899998866555


Q ss_pred             c
Q 048438          237 E  237 (239)
Q Consensus       237 ~  237 (239)
                      +
T Consensus       371 ~  371 (384)
T 1bs0_A          371 Q  371 (384)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=99.53  E-value=1.7e-13  Score=116.23  Aligned_cols=195  Identities=11%  Similarity=0.008  Sum_probs=115.4

Q ss_pred             cEEEEEecCCCCc-ccccChhHH---HHHHHHhCCEEEEecccccccccCc--ccccccCCCCCcceEEEcCcccCCCcc
Q 048438            5 PLFLCATIGTTAI-TAVDPLKPL---CDVAKQFGIWVHVDAAYAGSACIFP--EFRHFIDGVEGADSFSLNAHKWFFATL   78 (239)
Q Consensus         5 p~~vv~t~gtt~~-G~i~pl~~i---~~i~~~~gi~lhvD~A~~~~~~~~~--~~~~~~~~~~~~Ds~~~~~hK~l~~P~   78 (239)
                      +-+|+++..++.+ |.+.|++++   +++|++||+++|+|+||..+.....  ......   ..+|++++++||++++|.
T Consensus       138 ~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~---~~~d~~~~s~sK~~~~~~  214 (359)
T 3pj0_A          138 VSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEIC---ALFDSVYVSFYKGIGGIA  214 (359)
T ss_dssp             CSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHHHHH---TTCSEEEEESSSTTCCSS
T ss_pred             ceEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHHHhh---ccCCEEEEeccccCCCcc
Confidence            3455555555555 788776665   9999999999999999865542111  111112   248999999999999886


Q ss_pred             cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 048438           79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEV  158 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~  158 (239)
                      | |+++. +++++....... .......+.    ....+.....+++.     ..+++++..++++++.+.|++++|+++
T Consensus       215 g-g~~~~-~~~l~~~~~~~~-~~~~~~~~~----~~~~~~a~~~~l~~-----~~~~~~~~~~~~~~l~~~L~~~~g~~~  282 (359)
T 3pj0_A          215 G-AILAG-NDDFVQEAKIWK-RRYGGDLIS----LYPYILSADYYFEK-----RIGKMAEYFEAAKGLAERFNSCSGVKT  282 (359)
T ss_dssp             C-EEEEE-CHHHHHHHHHHH-HHTTCCCSC----CHHHHHHHHHHHHH-----HGGGHHHHHHHHHHHHHHHHTSTTEEE
T ss_pred             e-EEEEC-CHHHHHHHHHHH-HHhCCCcch----hHHHHHHHHHHHHH-----HHHHhHHHHHHHHHHHHHHhhCCCcee
Confidence            6 55544 444433221000 000000000    00001111122222     124555667888999999999999998


Q ss_pred             E-cCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEE--EECCEeEEEEEecCCCC
Q 048438          159 V-FPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNV--VLGGIYAIRFATGATLT  235 (239)
Q Consensus       159 ~-~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~--~~~g~~~lR~~~~~~~t  235 (239)
                      . .++..+.+.++++...                     ......+.+.|.++|..+....  ...+..++|+++....+
T Consensus       283 ~~~~~~~~~~~~~~~~~~---------------------~~~~~~l~~~l~~~GV~v~~g~~~~~~~~~~~r~~i~~~~~  341 (359)
T 3pj0_A          283 VPEVPVSNMFHVYFENSA---------------------DEIGAILTKIQDETGVGISGYLQEKSADVCAFEVSVGDAFA  341 (359)
T ss_dssp             ESSSCSSSEEEEEESSCH---------------------HHHHHHHHHHHHHHCEECCSCCEEEETTEEEEEEECCTTGG
T ss_pred             eccCCcceEEEEEecCcc---------------------chhHHHHHHHHHhcCcEecCCccccCCCceEEEEEecCccc
Confidence            6 5677888888886531                     1122366677777776644332  23578899999875543

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=99.53  E-value=1.1e-13  Score=117.29  Aligned_cols=190  Identities=9%  Similarity=0.045  Sum_probs=114.9

Q ss_pred             EEEEecCCCCc-ccccC---hhHHHHHHHHhCCEEEEecccccccccC--cccccccCCCCCcceEEEcCcccCCCcccc
Q 048438            7 FLCATIGTTAI-TAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIF--PEFRHFIDGVEGADSFSLNAHKWFFATLDC   80 (239)
Q Consensus         7 ~vv~t~gtt~~-G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~--~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~   80 (239)
                      +|+++..++.+ |.+.|   +++|+++|++||+++|+|+||+.+....  .......   ..+|+++.++||++++|.| 
T Consensus       138 ~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~---~~~d~~~~s~sK~~~~~~g-  213 (357)
T 3lws_A          138 CLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIA---GLFDSIYISFYKGLGGIAG-  213 (357)
T ss_dssp             EEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHH---TTSSEEEEESSSTTCCSSC-
T ss_pred             eEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHH---hcCCEEEEeccccCCCCce-
Confidence            45556666665 88776   8999999999999999999986322111  1111111   2489999999999988987 


Q ss_pred             eEEEeeCcccccccccCCCCccCCCCceecCCCC-CCh--HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438           81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRS-FRS--LKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE  157 (239)
Q Consensus        81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~  157 (239)
                      |+++. +++++.......        .....+.. ...  .....+++.     ..+++++..+.++++.+.|++++|++
T Consensus       214 g~~~~-~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~l~~~L~~~~g~~  279 (357)
T 3lws_A          214 AILAG-PAAFCQTARIWK--------RRYGGDLISLYPYIVSADYYYEL-----RKDRMGQYYEQAKQLAEQFNALPGVH  279 (357)
T ss_dssp             EEEEE-CHHHHHHHHHHH--------HHTTCCCSCCHHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHTSTTEE
T ss_pred             EEEEc-CHHHHHHHHHHH--------HHhcCCcccchHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhCCCCe
Confidence            66654 444443321000        00000001 111  111122222     33444556778889999999999999


Q ss_pred             EE-cCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEE-ECCEeEEEEEecCCCC
Q 048438          158 VV-FPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVV-LGGIYAIRFATGATLT  235 (239)
Q Consensus       158 ~~-~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~-~~g~~~lR~~~~~~~t  235 (239)
                      +. .++..+++.++++...                     ......+.+.|.++|..+..... ..+..++|+++...++
T Consensus       280 ~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~l~~~Gi~v~~g~~~~~~~~~~r~~i~~~~~  338 (357)
T 3lws_A          280 TTPEVPVSNMFHLHFDGQA---------------------ADISPKLEQVQEETGLGFVGYLVDKDGYCSTEISVGDAYG  338 (357)
T ss_dssp             EESSSCSSSEEEEEEESCH---------------------HHHHHHHHHHHHHHCEESCSCCEECSSEEEEEEEBCTTGG
T ss_pred             eccCCCcceEEEEEecCCh---------------------HHHHHHHHHHHHhcCeEEecccccCCCceEEEEEecchhh
Confidence            85 5678899999887531                     11123566677777765443211 1477899999886653

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=99.52  E-value=6.3e-14  Score=121.06  Aligned_cols=151  Identities=13%  Similarity=0.163  Sum_probs=99.3

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ce
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CC   81 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g   81 (239)
                      .+.+|+++..+|.+|.+.|+++|+++|+++|+++|+|++|+.+....+     +. . ++|+++.++||++++|.+  .|
T Consensus       150 ~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~-----~~-~-~~d~~~~S~sK~~~~~~~~~~G  222 (398)
T 1gc0_A          150 ATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRP-----LE-L-GADLVVHSATKYLSGHGDITAG  222 (398)
T ss_dssp             TEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTTTHHHHCCG-----GG-G-TCSEEEEETTTTTTCSSSCCCE
T ss_pred             CCeEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCCcccccCCc-----hh-h-CceEEEECCccccCCCCCCeEE
Confidence            356788889999999999999999999999999999999997765332     11 1 399999999999998876  68


Q ss_pred             EEEeeCcccccccccCCCCccCCCCceec-CCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE---
Q 048438           82 CLWATNPEYLKNKATESKPVVDYKDWQIT-LSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE---  157 (239)
Q Consensus        82 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~---  157 (239)
                      +++.++ +.+......         .... .+.....+..|.+++.+  +.+..+.++..+.++++.+.|++.++++   
T Consensus       223 ~l~~~~-~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~l~~~L~~~~~v~~v~  290 (398)
T 1gc0_A          223 IVVGSQ-ALVDRIRLQ---------GLKDMTGAVLSPHDAALLMRGI--KTLNLRMDRHCANAQVLAEFLARQPQVELIH  290 (398)
T ss_dssp             EEEECH-HHHHHHHHT---------HHHHHTCCCCCHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHTCTTEEEEE
T ss_pred             EEEECh-HHHHHHHHH---------HhhccCCCCCCHHHHHHHHhcc--chHHHHHHHHHHHHHHHHHHHhcCCCeeEEE
Confidence            877653 333211100         0000 11112234445444433  2345566667777888888887765543   


Q ss_pred             -----------EEcC---CCeeEEEEEEcC
Q 048438          158 -----------VVFP---CHFAVVCFRVSP  173 (239)
Q Consensus       158 -----------~~~~---~~~~iv~f~~~~  173 (239)
                                 +..+   ...++++|.+++
T Consensus       291 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~  320 (398)
T 1gc0_A          291 YPGLASFPQYTLARQQMSQPGGMIAFELKG  320 (398)
T ss_dssp             EC----------------CCTTEEEEEETT
T ss_pred             CCCCCCCcCHHHHHhhCCCCceEEEEEECC
Confidence                       2221   246799998864

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=99.52  E-value=4.9e-14  Score=121.44  Aligned_cols=199  Identities=13%  Similarity=0.082  Sum_probs=125.7

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccc--cCCC-CCcceEEEcCcccCCCcccc
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--IDGV-EGADSFSLNAHKWFFATLDC   80 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~~~~-~~~Ds~~~~~hK~l~~P~g~   80 (239)
                      .+.+|++++.+|.+|.+.|+++|.++|++||+++++|++|+.+.+- +.....  ..++ +..|.+..+++|+++.|.  
T Consensus       178 ~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~-~~g~~~~~~~~~~~~~~i~~~s~sK~~~~~G--  254 (401)
T 2bwn_A          178 APKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYG-PRGAGVAERDGLMHRIDIFNGTLAKAYGVFG--  254 (401)
T ss_dssp             SCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSS-TTSCCHHHHHTCGGGCSEEEEESSSTTCSCC--
T ss_pred             CceEEEEecCcCCCCCcCCHHHHHHHHHHcCCEEEEeccccccccC-CCCceeeeccCccccCcEEEeechhhccCCC--
Confidence            4678899999999999999999999999999999999999965331 111111  1121 236889999999988653  


Q ss_pred             eEEEeeCcccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Q 048438           81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVV  159 (239)
Q Consensus        81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~  159 (239)
                      |++.. ++++........      ..+....+.. .....+..+++.+...++++..++..++++++.+.|++. |++++
T Consensus       255 G~~~~-~~~~~~~l~~~~------~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~  326 (401)
T 2bwn_A          255 GYIAA-SARMVDAVRSYA------PGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL-GMPII  326 (401)
T ss_dssp             EEEEE-CHHHHHHHHHHC------HHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH-TCCBC
T ss_pred             CEEec-CHHHHHHHHHhC------cCceecCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHC-CCccc
Confidence            65554 333322111000      0011111111 222344456666655566788888899999999999987 88776


Q ss_pred             cCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHH-hcCcEEEEEEE---ECCEeEEEEEecCCCC
Q 048438          160 FPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESIN-ASGKAYMTNVV---LGGIYAIRFATGATLT  235 (239)
Q Consensus       160 ~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~---~~g~~~lR~~~~~~~t  235 (239)
                      . ++.++++|.++..                       .....+.+.|. +.|........   ..|..++|++++..+|
T Consensus       327 ~-~~~~~~~~~~~~~-----------------------~~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t  382 (401)
T 2bwn_A          327 D-HGSHIVPVVIGDP-----------------------VHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHD  382 (401)
T ss_dssp             C-CSSSCEEEECCCH-----------------------HHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSC
T ss_pred             C-CCCCeEEEEeCCh-----------------------HHHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCC
Confidence            4 4567888887531                       11235666775 45654432221   1244689999987766


Q ss_pred             Cc
Q 048438          236 EE  237 (239)
Q Consensus       236 ~~  237 (239)
                      .+
T Consensus       383 ~~  384 (401)
T 2bwn_A          383 LK  384 (401)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=99.51  E-value=8.3e-14  Score=119.85  Aligned_cols=197  Identities=14%  Similarity=0.042  Sum_probs=122.4

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccc--cCCC-CCcceEEEcCcccCCCcccc
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--IDGV-EGADSFSLNAHKWFFATLDC   80 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~~~~-~~~Ds~~~~~hK~l~~P~g~   80 (239)
                      .+.+|+.+...|.+|.+.|+++|.++|++||+++++|++|+.+...- .....  ..++ +.+|+++.++||+++ |.| 
T Consensus       173 ~~~~v~~~~~~nptG~~~~~~~l~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~di~~~s~sK~~~-~~G-  249 (398)
T 3a2b_A          173 SAKLICTDGIFSMEGDIVNLPELTSIANEFDAAVMVDDAHSLGVIGH-KGAGTASHFGLNDDVDLIMGTFSKSLA-SLG-  249 (398)
T ss_dssp             SCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSG-GGCCHHHHHTCGGGCSEEEEESSSTTC-SSC-
T ss_pred             CceEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCCcccccCC-CCCchHhhcCCCcCCeEEEeccccccc-CCC-
Confidence            46677788888999999999999999999999999999998664311 00111  1122 137999999999986 767 


Q ss_pred             eEEEeeCcccccccccCCCCccCCCCceecCCCCCChH-HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Q 048438           81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSL-KLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVV  159 (239)
Q Consensus        81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~  159 (239)
                      |+++.+ ++.+.......      ..+........... ....+++.+  +.+++..++..++.+++.+.|++. |++++
T Consensus       250 G~~~~~-~~~~~~l~~~~------~~~~~~~~~~~~~~a~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~  319 (398)
T 3a2b_A          250 GFVAGD-ADVIDFLKHNA------RSVMFSASMTPASVASTLKALEII--QNEPEHIEKLWKNTDYAKAQLLDH-GFDLG  319 (398)
T ss_dssp             EEEEEC-HHHHHHHHHHC------HHHHSSBCCCHHHHHHHHHHHHHH--HHCTHHHHHHHHHHHHHHHHHHHT-TCCBC
T ss_pred             cEEEeC-HHHHHHHHHhc------ccceecCCCCHHHHHHHHHHHHHH--hhCHHHHHHHHHHHHHHHHHHHhc-CCCcC
Confidence            887764 44333221100      00000011111111 223344442  234566777888999999999987 88765


Q ss_pred             cCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEE---CCEeEEEEEecCCCCC
Q 048438          160 FPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVL---GGIYAIRFATGATLTE  236 (239)
Q Consensus       160 ~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~---~g~~~lR~~~~~~~t~  236 (239)
                       ++..+++.+.++.                       ......+.+.|.++|.........   .+..++|+++...+|.
T Consensus       320 -~~~g~~~~~~~~~-----------------------~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRis~~~~~~~  375 (398)
T 3a2b_A          320 -ATESPILPIFIRS-----------------------NEKTFWVTKMLQDDGVFVNPVVSPAVPAEESLIRFSLMATHTY  375 (398)
T ss_dssp             -SCCSSEEEEECCC-----------------------HHHHHHHHHHHHHTTEECEEECTTTSCGGGCEEEEECCTTCCH
T ss_pred             -CCCCCEEEEEcCC-----------------------HHHHHHHHHHHHHCCcEEEeeCCCCCCCCCceEEEEEeCCCCH
Confidence             4456788777743                       112336777787776554433221   1357899998876665


Q ss_pred             c
Q 048438          237 E  237 (239)
Q Consensus       237 ~  237 (239)
                      +
T Consensus       376 e  376 (398)
T 3a2b_A          376 D  376 (398)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*

Probab=99.51  E-value=6.9e-14  Score=129.18  Aligned_cols=149  Identities=14%  Similarity=0.124  Sum_probs=97.3

Q ss_pred             EEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccc---cc-cCCCCCcc----eEEEcCcccCCCc
Q 048438            6 LFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFR---HF-IDGVEGAD----SFSLNAHKWFFAT   77 (239)
Q Consensus         6 ~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~---~~-~~~~~~~D----s~~~~~hK~l~~P   77 (239)
                      -+|+++.. |.+|.+.|+++|+++|+++|+++|||+||+++....+..+   .. ...+ ++|    +++.|+||++++|
T Consensus       283 klviv~~p-n~~G~v~dl~~I~~la~~~g~~livDeAh~~~~~f~~~~~g~~~l~~~~~-g~D~~~~iv~~S~hK~L~g~  360 (730)
T 1c4k_A          283 RLAVIQLG-TYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDL-GPEDPGIIVVQSVHKQQAGF  360 (730)
T ss_dssp             SEEEEESB-CTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGGSSGGGGGGCTTSCCCC-CTTSCEEEEEECHHHHSSCC
T ss_pred             eEEEEECC-CCCCeecCHHHHHHHHHHcCCeEEEEcccccccccCcccCCcCccccccc-CCCCCCEEEEECCCCCCCCC
Confidence            46666665 5799999999999999999999999999986533222221   01 1111 377    9999999999999


Q ss_pred             ccceEEEeeCcccccccccCCCCccCCCC-----ceecCCCCC--ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Q 048438           78 LDCCCLWATNPEYLKNKATESKPVVDYKD-----WQITLSRSF--RSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLV  150 (239)
Q Consensus        78 ~g~g~l~~~~~~~l~~~~~~~~~~~~~~~-----~~~~~~~~~--~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l  150 (239)
                      .++|+++++++. +....    ...+...     ...+.+.+.  ...++-.+++.+..++.++++++..++++++++.|
T Consensus       361 ~~gg~I~v~~~~-l~g~~----~~i~~~~~~~~~~~~~stsp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L  435 (730)
T 1c4k_A          361 SQTSQIHKKDSH-IKGQL----RYCDHKHFNNSFNLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKL  435 (730)
T ss_dssp             TTCEEEEEECGG-GTTST----TCCCHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEecchh-hcCcc----cccCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence            999999887643 21100    0111000     011111221  11233345555555444677888999999999999


Q ss_pred             hC-CCCeEEEcC
Q 048438          151 SG-DKRFEVVFP  161 (239)
Q Consensus       151 ~~-~~g~~~~~~  161 (239)
                      ++ ++|++++.+
T Consensus       436 ~~~i~g~~v~~p  447 (730)
T 1c4k_A          436 IKAGSMFRPFVP  447 (730)
T ss_dssp             HHTTCSSEESSC
T ss_pred             hhhCCCeEEccc
Confidence            98 789998754

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=99.50  E-value=1.2e-13  Score=118.21  Aligned_cols=198  Identities=11%  Similarity=0.061  Sum_probs=121.5

Q ss_pred             ccEEEEEecCCCCcccc---cChhHHHHHHHHhCCEEEEecccccccccCcccccccCCC--CCcc--eEEEcCcccCC-
Q 048438            4 IPLFLCATIGTTAITAV---DPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGV--EGAD--SFSLNAHKWFF-   75 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i---~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~--~~~D--s~~~~~hK~l~-   75 (239)
                      .+-+|+++..+|.+|.+   +++++|+++|++||+++++|++|+.+......... +..+  ...|  +++.++||+++ 
T Consensus       160 ~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~-~~~~~~~~~d~~i~~~s~sK~~g~  238 (391)
T 3dzz_A          160 SVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITP-AFTVDWDAKNWVVSLISPSKTFNL  238 (391)
T ss_dssp             TEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCC-GGGSCTTTGGGEEEEECSHHHHTC
T ss_pred             CceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCcee-hhhcCccccCcEEEEEeChhhccc
Confidence            46677788889999999   88999999999999999999999865432211111 1111  1256  88999999985 


Q ss_pred             CcccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhC-CC
Q 048438           76 ATLDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSG-DK  154 (239)
Q Consensus        76 ~P~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~-~~  154 (239)
                      ....+|+++..+++.........      ...............+..+++. +.+.++++.++..++++++.+.|++ ++
T Consensus       239 ~G~r~G~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~  311 (391)
T 3dzz_A          239 AALHAACAIIPNPDLRARAEESF------FLAGIGEPNLLAIPAAIAAYEE-GHDWLRELKQVLRDNFAYAREFLAKEVP  311 (391)
T ss_dssp             TTTCCEEEECCSHHHHHHHHHHH------HHHTCSSCCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             cchhheEEEECCHHHHHHHHHHH------HhhccCCCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            33457888776454433221100      0000001111222333344443 4555778888888999999999998 88


Q ss_pred             CeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHH-hcCcEEEEEEEE--CCEeEEEEEec
Q 048438          155 RFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESIN-ASGKAYMTNVVL--GGIYAIRFATG  231 (239)
Q Consensus       155 g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~--~g~~~lR~~~~  231 (239)
                      +++++.+.....+.+.++..+.               +       ...+.+.|. +.|....+....  .+..++|++++
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~---------------~-------~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~  369 (391)
T 3dzz_A          312 EVKVLDSNASYLAWVDISALGM---------------N-------AEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLA  369 (391)
T ss_dssp             TSEECCCCBSSEEEEECGGGCS---------------C-------HHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECC
T ss_pred             CcEEeccCceEEEEEehhhcCC---------------C-------HHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEec
Confidence            9988754433344566653211               0       125666674 556554433222  23578999987

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=99.50  E-value=4.7e-13  Score=115.67  Aligned_cols=195  Identities=13%  Similarity=0.087  Sum_probs=120.9

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccc--cCCC-CCcceEEEcCcccCCCcccce
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--IDGV-EGADSFSLNAHKWFFATLDCC   81 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~~~~-~~~Ds~~~~~hK~l~~P~g~g   81 (239)
                      +.+|+++...+.+|.+.|+++|.++|++||+++++|.+|+.+.+... ....  ..++ ..+|+++.+++|+++++  .|
T Consensus       187 ~~~vi~~~~~nptG~~~~l~~l~~la~~~~~~li~De~~~~g~~g~~-g~~~~~~~~~~~~~di~~~s~sK~~~~~--gg  263 (409)
T 3kki_A          187 PGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLGTHGPN-GAGLLAELGLTREVHFMTASLAKTFAYR--AG  263 (409)
T ss_dssp             SCEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGG-GCCHHHHHTCGGGCSEEEEESSSTTCSS--CE
T ss_pred             CeEEEECCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCC-CCcchhhcCCCCCCCEEEeecchhhCCC--ce
Confidence            46788888889999999999999999999999999999987654211 1100  1111 24899999999998766  36


Q ss_pred             EEEeeCcccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc
Q 048438           82 CLWATNPEYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF  160 (239)
Q Consensus        82 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~  160 (239)
                      +++. +++.........      ..+....+.. .....+..+++.+.  ..++..++..++.+++.+.|++. ++++. 
T Consensus       264 ~v~~-~~~~~~~~~~~~------~~~~~~~~~~~~~~aa~~aal~~~~--~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-  332 (409)
T 3kki_A          264 AIWC-NNEVNRCVPFIS------YPAIFSSTLLPYEAAGLETTLEIIE--SADNRRQHLDRMARKLRIGLSQL-GLTIR-  332 (409)
T ss_dssp             EEEE-SSSGGGTHHHHC------HHHHHSBCCCHHHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHTT-TCCCC-
T ss_pred             EEEE-CHHHHHHHHHhC------cCccccCCCcHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHc-CCccC-
Confidence            6555 333333221100      0011111111 11122333444332  22456667778999999999987 77655 


Q ss_pred             CCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEE---EECCEeEEEEEecCCCCCc
Q 048438          161 PCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNV---VLGGIYAIRFATGATLTEE  237 (239)
Q Consensus       161 ~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~---~~~g~~~lR~~~~~~~t~~  237 (239)
                       ...+++.+.++..                       .....+.+.|.++|.+.....   ...+..++|+++...+|++
T Consensus       333 -~~~~~~~~~~~~~-----------------------~~~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e  388 (409)
T 3kki_A          333 -SESQIIGLETGDE-----------------------RNTEKVRDYLESNGVFGSVFCRPATSKNKNIIRLSLNSDVNDE  388 (409)
T ss_dssp             -CSSSEEEEEEESH-----------------------HHHHHHHHHHHHTTEECEEECTTSSCTTCEEEEEECCTTCCHH
T ss_pred             -CCCCEEEEEeCCH-----------------------HHHHHHHHHHHHCCceEeeeCCCCcCCCCcEEEEEccCCCCHH
Confidence             4567888887642                       122356777877765533221   1345789999988766654

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.50  E-value=2.7e-13  Score=116.44  Aligned_cols=150  Identities=16%  Similarity=0.275  Sum_probs=99.7

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc--eE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC--CC   82 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~--g~   82 (239)
                      +.+|+++..++.+|.+.|+++|.++|++||+++++|++|+.+....+     .. . ++|+++.++||++++|.+.  |+
T Consensus       138 ~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~-----~~-~-~~di~~~s~sK~~~~~~~~~~G~  210 (386)
T 1cs1_A          138 PKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQNP-----LA-L-GADLVLHSCTKYLNGHSDVVAGV  210 (386)
T ss_dssp             CSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCG-----GG-G-TCSEEEEETTTTTTCSSCCCCEE
T ss_pred             CcEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCCc-----cc-c-CceEEEEcCcccccCCCCceeEE
Confidence            45777888999999999999999999999999999999988765432     11 2 3899999999999989874  88


Q ss_pred             EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE-cC
Q 048438           83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVV-FP  161 (239)
Q Consensus        83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~-~~  161 (239)
                      +++++++.......          +....+.....+..+.+++.+  +.+.++.++..+.++++.+.|++.+.+.-+ .+
T Consensus       211 ~~~~~~~l~~~l~~----------~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~  278 (386)
T 1cs1_A          211 VIAKDPDVVTELAW----------WANNIGVTGGAFDSYLLLRGL--RTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHP  278 (386)
T ss_dssp             EEESSHHHHHHHHH----------HHHHHTCBCCHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECT
T ss_pred             EEeCcHHHHHHHHH----------HHHhcCCCCCHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECC
Confidence            88765333322210          000001111223333333322  234455666677888888888887666433 22


Q ss_pred             ----------------CCeeEEEEEEcC
Q 048438          162 ----------------CHFAVVCFRVSP  173 (239)
Q Consensus       162 ----------------~~~~iv~f~~~~  173 (239)
                                      ...++++|.+++
T Consensus       279 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (386)
T 1cs1_A          279 SLPENQGHEIAARQQKGFGAMLSFELDG  306 (386)
T ss_dssp             TSTTSTTHHHHHHHCSSCCSEEEEEESS
T ss_pred             CCCCCccHHHHHHhcCCCceEEEEEECC
Confidence                            126789998864

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=99.49  E-value=5.7e-13  Score=114.98  Aligned_cols=151  Identities=15%  Similarity=0.165  Sum_probs=105.4

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ce
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CC   81 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g   81 (239)
                      .+.+|++...+|.+|.+.|+++|+++|++||+++|+|++|+.+...-+     . .+ ++|+++.|+||+++++.+  +|
T Consensus       151 ~~~~v~~~~~~nptG~~~~l~~i~~la~~~g~~li~D~~~~~~~~~~~-----~-~~-~~di~~~S~sK~lg~~g~~~~G  223 (392)
T 3qhx_A          151 TTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPALQQP-----L-SL-GADVVLHSTTKYIGGHSDVVGG  223 (392)
T ss_dssp             TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTTCCG-----G-GG-TCSEEEEETTTTTTCSSCCCCE
T ss_pred             CCeEEEEECCCCCCcEEecHHHHHHHHHHcCCEEEEECCCcccccCCh-----H-Hh-CCcEEEEcCccccCCCCCceEE
Confidence            356778888999999999999999999999999999999986533211     1 12 399999999999887643  67


Q ss_pred             EEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcC
Q 048438           82 CLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFP  161 (239)
Q Consensus        82 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~  161 (239)
                      +++.+++.+......          .....+.....+..|.+++.+  +.+..++++..++++++.+.|++.+++.-+..
T Consensus       224 ~v~~~~~~~~~~l~~----------~~~~~g~~~~~~~~~~~~~~l--~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~  291 (392)
T 3qhx_A          224 ALVTNDEELDQSFAF----------LQNGAGAVPGPFDAYLTMRGL--KTLVLRMQRHSENAAAVAEFLAEHPAISTVLY  291 (392)
T ss_dssp             EEEESCHHHHHHHHH----------HHHHHCCCCCHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEC
T ss_pred             EEEECcHHHHHHHHH----------HHHhcCCCCCHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHhcCCCcceEEC
Confidence            777654443322210          011122333445566655543  34567778888999999999999888764432


Q ss_pred             CC-----------------eeEEEEEEcC
Q 048438          162 CH-----------------FAVVCFRVSP  173 (239)
Q Consensus       162 ~~-----------------~~iv~f~~~~  173 (239)
                      |.                 .++++|.+++
T Consensus       292 p~l~~~~~~~~~~~~~~g~g~~~~~~l~~  320 (392)
T 3qhx_A          292 PGLPSHPGHAVAARQMRGFGGMVSVRMRA  320 (392)
T ss_dssp             TTSTTSTTHHHHHHHCSSCCSEEEEEETT
T ss_pred             CCCCCCCCHHHHHHhCCCCceEEEEEeCC
Confidence            21                 4689999976

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.49  E-value=4.6e-13  Score=116.59  Aligned_cols=161  Identities=16%  Similarity=0.176  Sum_probs=105.6

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEeccc-ccccccCcccccccCCCCCcceEEEcCcccCCCccc-ce
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAY-AGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD-CC   81 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~-~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g-~g   81 (239)
                      .+.+|+++..+|.+|.+.|+++|+++|+++|+++++|++| +.+.. ..   . . +. ++|++++++||++++|.+ .|
T Consensus       144 ~~~~v~~~~~~n~~G~~~~l~~i~~~a~~~g~~livD~~~~~~g~~-~~---~-~-~~-~~Di~~~s~~K~l~~~g~~~G  216 (421)
T 2ctz_A          144 KTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYL-LR---P-L-AW-GAALVTHSLTKWVGGHGAVIA  216 (421)
T ss_dssp             TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTS-CC---G-G-GG-TCSEEEEETTTTTTCSSCCCC
T ss_pred             CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCccccccc-CC---c-c-cc-CCeEEEECCcccccCCCCcEE
Confidence            3567888999999999999999999999999999999999 76632 11   1 1 12 399999999999998764 67


Q ss_pred             EEEeeC--ccc-------ccccccCCCCcc---CCCCc--e--------ecCCCCCChHHHHHHHHHhCHHHHHHHHHHH
Q 048438           82 CLWATN--PEY-------LKNKATESKPVV---DYKDW--Q--------ITLSRSFRSLKLWFVIRNYGMENLRHFLRSH  139 (239)
Q Consensus        82 ~l~~~~--~~~-------l~~~~~~~~~~~---~~~~~--~--------~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~  139 (239)
                      .+++.+  +++       +.+.........   +....  .        ...+.....+..|..++  +.+.+..++++.
T Consensus       217 ~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~--~l~~l~~r~~~~  294 (421)
T 2ctz_A          217 GAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLL--GMETLSLRAERH  294 (421)
T ss_dssp             EEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHH--HHTTHHHHHHHH
T ss_pred             EEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHHc--CcchHHHHHHHH
Confidence            777752  222       111100000000   00000  0        00122334444454444  334456677788


Q ss_pred             HHHHHHHHHHHhCCCCeEEEc-C-----------------CCeeEEEEEEcC
Q 048438          140 VNMARLFERLVSGDKRFEVVF-P-----------------CHFAVVCFRVSP  173 (239)
Q Consensus       140 ~~la~~l~~~l~~~~g~~~~~-~-----------------~~~~iv~f~~~~  173 (239)
                      .++++++.+.|++.|+++.+. |                 ...+|++|.+++
T Consensus       295 ~~~a~~l~~~L~~~p~v~~v~~p~~~~~~~~~~~~~~~~~~~g~ivsf~l~~  346 (421)
T 2ctz_A          295 VENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLKG  346 (421)
T ss_dssp             HHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHHTTCCCSEEEEEETT
T ss_pred             HHhHHHHHHHHHhCCCeeEEECCCCCCCCCHHHHHHhccCCCceEEEEEeCC
Confidence            899999999999999998874 2                 236799999975

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.49  E-value=4.4e-13  Score=115.96  Aligned_cols=154  Identities=12%  Similarity=0.053  Sum_probs=98.1

Q ss_pred             cEEEEEecCCCCccccc---ChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--
Q 048438            5 PLFLCATIGTTAITAVD---PLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--   79 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~---pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--   79 (239)
                      +.+|+++..+|.+|.+.   ++++|+++|++||+++++|++|+.+.... .....+.++...|+++.++||+++. .|  
T Consensus       175 ~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~-~~~~~~~~~~~~~i~~~s~sK~~g~-~G~r  252 (409)
T 2gb3_A          175 TKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRG-EFASALSIESDKVVVIDSVSKKFSA-CGAR  252 (409)
T ss_dssp             EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSS-CCCCGGGSCCTTEEEEEESTTTTTC-GGGC
T ss_pred             CeEEEECCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCC-CCCCccccCCCCEEEEecchhccCC-ccce
Confidence            56677788889999985   48999999999999999999998765422 1111123333489999999999853 44  


Q ss_pred             ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438           80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNY--GMENLRHFLRSHVNMARLFERLVSGDKRFE  157 (239)
Q Consensus        80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--g~~g~~~~~~~~~~la~~l~~~l~~~~g~~  157 (239)
                      +|++++++++.+......    .  ..+.     ....+..+.+...+  +.+.+++..++..++.+++.+.|++. |++
T Consensus       253 ~G~~~~~~~~l~~~l~~~----~--~~~~-----~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~  320 (409)
T 2gb3_A          253 VGCLITRNEELISHAMKL----A--QGRL-----APPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEH-GLK  320 (409)
T ss_dssp             CEEEECSCHHHHHHHHHH----H--HHSC-----CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred             EEEEEECcHHHHHHHHHH----H--hccC-----CCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHc-Cce
Confidence            788887552333222100    0  0000     11122222222233  45667778888889999999999987 887


Q ss_pred             E-EcCCCeeEEEEEEc
Q 048438          158 V-VFPCHFAVVCFRVS  172 (239)
Q Consensus       158 ~-~~~~~~~iv~f~~~  172 (239)
                      + ..+.....+.+.++
T Consensus       321 ~~~~~~~~~~~~~~~~  336 (409)
T 2gb3_A          321 RFTKPSGAFYITAELP  336 (409)
T ss_dssp             CBCCCSBSSEEEEECS
T ss_pred             eeeCCCeeEEEEEEeC
Confidence            7 43333334444654

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=99.49  E-value=5e-14  Score=121.06  Aligned_cols=199  Identities=15%  Similarity=0.140  Sum_probs=117.5

Q ss_pred             CCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEEeeCccccc
Q 048438           13 GTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWATNPEYLK   92 (239)
Q Consensus        13 gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~l~   92 (239)
                      .++.+|.+.|+++|.++|+++|+++++|+||+.+....+..   ...+..+++++++.||+++++. .|+++..++....
T Consensus       150 ~~n~tG~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~---~~~~~di~~~S~s~~K~l~~g~-gg~~~~~~~~~~~  225 (391)
T 3dr4_A          150 PVHLYGQICDMDPILEVARRHNLLVIEDAAEAVGATYRGKK---SGSLGDCATFSFFGNAIITTGE-GGMITTNDDDLAA  225 (391)
T ss_dssp             CBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEE---TTSSSSEEEEECBTTSSSCCBS-CEEEEESCHHHHH
T ss_pred             EECCCCChhhHHHHHHHHHHcCCEEEEECcccccceECCee---ecccCCEEEEECCCCCcCCcCC-eEEEEECCHHHHH
Confidence            35789999999999999999999999999998776543321   1112236667777899997643 5566555443321


Q ss_pred             ccc--cCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcC--C-----C
Q 048438           93 NKA--TESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFP--C-----H  163 (239)
Q Consensus        93 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~--~-----~  163 (239)
                      ...  ...+...+...+....+..+....+..++.....++++++.++..++++++.+.|+++ ++++..+  +     .
T Consensus       226 ~~~~~~~~g~~~~~~~~~~~~g~~~~~~~l~aa~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~  304 (391)
T 3dr4_A          226 KMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQAAIGLAQLERVDEHLAARERVVGWYEQKLARL-GNRVTKPHVALTGRHV  304 (391)
T ss_dssp             HHHHHHBTTCCTTSTTCCSSCCCBCBCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHGGG-TTSEECCCCCTTSCCC
T ss_pred             HHHHHHhcCCCCCCcccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CccccCcCCCCCCcce
Confidence            111  0000000000011112223333344444443344667788888889999999999998 8887655  2     1


Q ss_pred             eeEEEEEEcCC-CcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEE--------------------CC
Q 048438          164 FAVVCFRVSPL-PVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVL--------------------GG  222 (239)
Q Consensus       164 ~~iv~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~--------------------~g  222 (239)
                      ..++.+.++.. +.               +       ...+.+.|.++|.........                    ..
T Consensus       305 ~~~~~i~~~~~~~~---------------~-------~~~l~~~L~~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~  362 (391)
T 3dr4_A          305 FWMYTVRLGEGLST---------------T-------RDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEACG  362 (391)
T ss_dssp             CSSEEEEECSSCSS---------------C-------HHHHHHHHHHTTCCCEECCCCGGGSGGGGGGCCTTCHHHHHHH
T ss_pred             eEEEEEEECCccch---------------h-------HHHHHHHHHHCCCceeecCCccccChhhhhcCcCCChHHHHHH
Confidence            22456666541 10               0       125677777777654432100                    01


Q ss_pred             EeEEEEEecCCCCCcC
Q 048438          223 IYAIRFATGATLTEER  238 (239)
Q Consensus       223 ~~~lR~~~~~~~t~~~  238 (239)
                      ...+|++++..+|.+|
T Consensus       363 ~~~lrl~~~~~~t~ed  378 (391)
T 3dr4_A          363 VDGLNLPTHAGLTEAD  378 (391)
T ss_dssp             HHEEEECCCTTCCHHH
T ss_pred             hCeEEccCCCCCCHHH
Confidence            3689999877777653

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=99.49  E-value=2.6e-13  Score=116.38  Aligned_cols=155  Identities=12%  Similarity=0.073  Sum_probs=95.8

Q ss_pred             CCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEEeeCccc--
Q 048438           13 GTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWATNPEY--   90 (239)
Q Consensus        13 gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~--   90 (239)
                      .++.+|.+.|+++|.++|++||+++|+|++|+.+......  . +..+..+++++++.||++.++. .|+++.+++..  
T Consensus       132 ~~n~tG~~~~l~~i~~la~~~~~~li~D~a~~~g~~~~~~--~-~~~~~~i~~~S~s~~K~l~g~~-~G~~~~~~~~~~~  207 (388)
T 1b9h_A          132 PVHMAGLMADMDALAKISADTGVPLLQDAAHAHGARWQGK--R-VGELDSIATFSFQNGKLMTAGE-GGAVVFPDGETEK  207 (388)
T ss_dssp             CBCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTE--E-GGGSSSCEEEECCTTSSSCSSS-CEEEEECTTCHHH
T ss_pred             EeCCccCcCCHHHHHHHHHHcCCEEEEecchhcCCccCCe--e-cccccceEEEEccCCCcccCCC-eEEEEECCHHHHH
Confidence            6788999999999999999999999999999876543111  0 1122238888888999997764 57776654323  


Q ss_pred             ccccc--cCCCCccCCCCce-ecCCC--CCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcC----
Q 048438           91 LKNKA--TESKPVVDYKDWQ-ITLSR--SFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFP----  161 (239)
Q Consensus        91 l~~~~--~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~----  161 (239)
                      +....  ...+.......+. ...+.  +...+..+..+..  .+.+++..++..++++++.+.|++++++++..+    
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~--~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~  285 (388)
T 1b9h_A          208 YETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQ--LARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRA  285 (388)
T ss_dssp             HHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTC
T ss_pred             HHHHHHHHhCCCCccCccceeecccccCCcCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhccCCCccccCCCcCC
Confidence            22221  0000000000010 01111  2233333333332  234566777778899999999999889988753    


Q ss_pred             --CCeeEEEEEEcC
Q 048438          162 --CHFAVVCFRVSP  173 (239)
Q Consensus       162 --~~~~iv~f~~~~  173 (239)
                        ...++++|++++
T Consensus       286 ~~~~~~~~~~~~~~  299 (388)
T 1b9h_A          286 DRNSHYMAMFRIPG  299 (388)
T ss_dssp             CBCCCSEEEEECTT
T ss_pred             CccceEEEEEEeCC
Confidence              225688888865

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=99.48  E-value=1.2e-13  Score=120.09  Aligned_cols=158  Identities=12%  Similarity=0.114  Sum_probs=103.2

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhC----------CEEEEecccccccccCcccccccCCCCCcceEEEcCccc
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFG----------IWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKW   73 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~g----------i~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~   73 (239)
                      .+.+|++++.+|.+|.+.|+++|.++|+++|          +++|+|+||+.+..+.+     +..+ ++|++++++|||
T Consensus       175 ~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~~~~-----~~~~-~~d~~~~s~~K~  248 (432)
T 3a9z_A          175 TTCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKRRVD-----VEDL-GVDFLTIVGHKF  248 (432)
T ss_dssp             TEEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTSCCC-----HHHH-CCSEEEEEGGGT
T ss_pred             CceEEEEECcccCcccccCHHHHHHHHHhcCcccccccCCceEEEEEchhhhCCcccC-----hhhc-CCCEEEEehhHh
Confidence            3678888999999999999999999999999          99999999988755433     2112 389999999998


Q ss_pred             CCCcccceEEEeeCcccccccccCCCCccCCC-CceecCCC-CC-ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Q 048438           74 FFATLDCCCLWATNPEYLKNKATESKPVVDYK-DWQITLSR-SF-RSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLV  150 (239)
Q Consensus        74 l~~P~g~g~l~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~-~~-~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l  150 (239)
                      + +|. +|++++++.........   ...+.. ......+. .. ....+..+++.+ .+++++..++..++++++.+.|
T Consensus       249 ~-g~~-~G~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~-~~~~~~~~~~~~~~~~~l~~~L  322 (432)
T 3a9z_A          249 Y-GPR-IGALYVRGVGKLTPLYP---MLFGGGQERNFRPGTENTPMIAGLGKAADLV-SENCETYEAHMRDIRDYLEERL  322 (432)
T ss_dssp             T-CCS-CEEEEETTBTTTBCCCC---SCCSSCGGGGTSCSCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             c-CCc-ceEEEEccccccCCcCc---eeecCCccccccCCCcCHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHH
Confidence            6 577 99999865321211111   000000 00111111 11 112233345443 3467888888999999999999


Q ss_pred             hCCCCeEEE--cC----CC-eeEEEEEEcC
Q 048438          151 SGDKRFEVV--FP----CH-FAVVCFRVSP  173 (239)
Q Consensus       151 ~~~~g~~~~--~~----~~-~~iv~f~~~~  173 (239)
                      ++++|+++.  .+    .. .++++|.+++
T Consensus       323 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  352 (432)
T 3a9z_A          323 EAEFGKRIHLNSRFPGVERLPNTCNFSIQG  352 (432)
T ss_dssp             HHHHGGGEEESSCCTTCCBCTTEEEEEECS
T ss_pred             HhccCCcEEEeCCCCcccCCCCEEEEEeCC
Confidence            886565443  33    12 3488899875

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=99.47  E-value=9.3e-14  Score=116.67  Aligned_cols=80  Identities=18%  Similarity=0.177  Sum_probs=65.8

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHH-hCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ce
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQ-FGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CC   81 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~-~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g   81 (239)
                      +-+|++++.+|.+|.+.|+++|.++|++ +|+++++|++|+.+....+     .. . ++|++++++||++++|.+  +|
T Consensus        84 ~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~~~~~~-----~~-~-~~d~~~~s~~K~~~~~~~r~~G  156 (331)
T 1pff_A           84 TRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNP-----LD-L-GVDIVVHSATKYINGHTDVVAG  156 (331)
T ss_dssp             EEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCCG-----GG-G-TCSEEEEETTTTTSSSSSCCCE
T ss_pred             CeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCcccccCCh-----hh-c-CCcEEEEECccccCCCCCceEE
Confidence            5678889999999999999999999999 9999999999998765433     11 1 389999999999999987  78


Q ss_pred             EEEeeCcccc
Q 048438           82 CLWATNPEYL   91 (239)
Q Consensus        82 ~l~~~~~~~l   91 (239)
                      +++.++++.+
T Consensus       157 ~~~~~~~~~~  166 (331)
T 1pff_A          157 LVCSRADIIA  166 (331)
T ss_dssp             EEEECHHHHH
T ss_pred             EEEeCcHHHH
Confidence            8877542443

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=99.47  E-value=1.6e-13  Score=116.98  Aligned_cols=142  Identities=15%  Similarity=0.114  Sum_probs=88.0

Q ss_pred             CCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCc--ccCCCcccceEEEeeCccc
Q 048438           13 GTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAH--KWFFATLDCCCLWATNPEY   90 (239)
Q Consensus        13 gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~h--K~l~~P~g~g~l~~~~~~~   90 (239)
                      .++.+|.+.|+++|.++|++||+++++|++|+.+.....  +  ..+ ..+|++++++|  |+++++...|+++.+++..
T Consensus       131 ~~n~~G~~~~~~~i~~~~~~~~~~li~D~~~~~g~~~~~--~--~~~-~~~d~~~~s~~~~K~l~~~g~~g~~~~~~~~~  205 (374)
T 3uwc_A          131 PVHYTGNIADMPALAKIAKKHNLHIVEDACQTILGRIND--K--FVG-SWGQFACFSLHPLKNLNVWSDAGVIITHSDEY  205 (374)
T ss_dssp             CBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETT--E--ETT-SSSSEEEEECSSSSSSCCSSCCEEEEESCHHH
T ss_pred             EeCCcCCcCCHHHHHHHHHHcCCEEEEeCCCccCceeCC--e--ecc-ccccEEEEeCCCCCcCCccceeEEEEeCCHHH
Confidence            667899999999999999999999999999987654211  1  111 12799999988  9987644466666655433


Q ss_pred             ccccccC-CCCccCCCCcee-cCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCC-eEEEcC
Q 048438           91 LKNKATE-SKPVVDYKDWQI-TLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKR-FEVVFP  161 (239)
Q Consensus        91 l~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g-~~~~~~  161 (239)
                      ....... ..+..  ..+.. ..+..+....+..++.....++++++.++..++++++.+.|+++++ +++...
T Consensus       206 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~  277 (374)
T 3uwc_A          206 AEKLRLYRNHGLI--NRDVCVEYGINCRMDTIQAVIANRLMNQLETITEKRRGIAHLYDQSFVDLSEFIDVPVR  277 (374)
T ss_dssp             HHHHHHHTBTTEE--ETTEESSCCCBCBCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHTGGGTTTEECCCC
T ss_pred             HHHHHHHHhcCcc--ccCccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeEEeccC
Confidence            2211100 00000  00111 1112222233333333333456677888888999999999999877 887543

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=99.46  E-value=2.4e-12  Score=109.48  Aligned_cols=189  Identities=11%  Similarity=0.000  Sum_probs=118.8

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-ccc
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-LDC   80 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~   80 (239)
                      +-+|+++..+|.+|.+.|   +++|+++|++||+++++|.+|+.+............. ...|+++.++||+++.| ..+
T Consensus       147 ~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~G~r~  225 (364)
T 1lc5_A          147 LDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKD-NPHIWVLRSLTKFYAIPGLRL  225 (364)
T ss_dssp             CCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTT-CTTEEEEEESTTTTTCTTTCC
T ss_pred             CCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHhcc-CCCEEEEEECchhhcCCccce
Confidence            445666777899999998   9999999999999999999998654311000111111 23788999999998644 236


Q ss_pred             eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Q 048438           81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYG-MENLRHFLRSHVNMARLFERLVSGDKRFEVV  159 (239)
Q Consensus        81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~  159 (239)
                      |++++.+++.+.......      ..+      ....+..+.+...+. .+.+++..++..++.+++.+.|++.+++++.
T Consensus       226 G~~~~~~~~~~~~l~~~~------~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~  293 (364)
T 1lc5_A          226 GYLVNSDDAAMARMRRQQ------MPW------SVNALAALAGEVALQDSAWQQATWHWLREEGARFYQALCQLPLLTVY  293 (364)
T ss_dssp             EEEECCCHHHHHHHHHHS------CTT------CSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEC
T ss_pred             EEEEECCHHHHHHHHHhC------CCC------CCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcCCCCEEC
Confidence            888733444433221100      001      112333344433332 2456677777888899999999988899875


Q ss_pred             cCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEE--CCEeEEEEEecC
Q 048438          160 FPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVL--GGIYAIRFATGA  232 (239)
Q Consensus       160 ~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~--~g~~~lR~~~~~  232 (239)
                       ++..+.+.+.++...                         ..+.+.|.++|..+......  .+..++|+++..
T Consensus       294 -~~~g~~~~~~~~~~~-------------------------~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~~  342 (364)
T 1lc5_A          294 -PGRANYLLLRCERED-------------------------IDLQRRLLTQRILIRSCANYPGLDSRYYRVAIRS  342 (364)
T ss_dssp             -CCSSSEEEEEESCTT-------------------------CCHHHHHHTTTEECEECTTSTTCCTTEEEEECCC
T ss_pred             -CCCCeEEEEECCCcH-------------------------HHHHHHHHHCCcEEeeCcccCCCCCCEEEEEeCC
Confidence             566677777775311                         14566777776554432222  134689999753

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*

Probab=99.46  E-value=1.5e-12  Score=114.12  Aligned_cols=148  Identities=14%  Similarity=0.207  Sum_probs=102.7

Q ss_pred             EEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcc--cceEE
Q 048438            6 LFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATL--DCCCL   83 (239)
Q Consensus         6 ~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~--g~g~l   83 (239)
                      .+|++...+|.+|.+.|+++|+++||++|++++||++|+.+....+     . .+ ++|+++.++||+++++.  ..|++
T Consensus       202 ~lV~le~p~NptG~v~dl~~I~~la~~~g~~livD~a~~~~~~~~~-----~-~~-g~Div~~S~sK~~gg~gd~~~G~l  274 (445)
T 1qgn_A          202 NLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKA-----L-AL-GADLVLHSATKFLGGHNDVLAGCI  274 (445)
T ss_dssp             EEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCT-----T-TT-TCSEEEECTTTTTTCSSSCCCEEE
T ss_pred             CEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCCc-----c-cc-CCEEEEECCcccccccccceEEEE
Confidence            6788889999999999999999999999999999999987644222     1 22 49999999999987543  27887


Q ss_pred             EeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCe-EEEcCC
Q 048438           84 WATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRF-EVVFPC  162 (239)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~-~~~~~~  162 (239)
                      +.+ ++++.....          +....+.....+..|..++.+  +.+..++++..+.++++.+.|++.|++ ++..|.
T Consensus       275 ~~~-~~l~~~l~~----------~~~~~g~~~~~~~a~~~~~~l--~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~  341 (445)
T 1qgn_A          275 SGP-LKLVSEIRN----------LHHILGGALNPNAAYLIIRGM--KTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPG  341 (445)
T ss_dssp             EEC-HHHHHHHHH----------HHHHHCCCCCHHHHHHHHHHG--GGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTT
T ss_pred             EEC-HHHHHHHHH----------HHHHhCCCCCHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHhcCCCceEEECCC
Confidence            774 333332210          000111122334445444433  445667777778899999999999888 455441


Q ss_pred             ----------------CeeEEEEEEcC
Q 048438          163 ----------------HFAVVCFRVSP  173 (239)
Q Consensus       163 ----------------~~~iv~f~~~~  173 (239)
                                      ..++++|.+++
T Consensus       342 l~~~p~~~~~~~~~~g~g~ivsf~l~~  368 (445)
T 1qgn_A          342 LQSHPEHHIAKKQMTGFGGAVSFEVDG  368 (445)
T ss_dssp             SSSSTTHHHHHHHCSCCCSEEEEEESS
T ss_pred             CCCCchHHHHHHhccCCCcEEEEEECC
Confidence                            46899999975

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=99.46  E-value=2.3e-13  Score=116.16  Aligned_cols=139  Identities=12%  Similarity=0.063  Sum_probs=84.2

Q ss_pred             CCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEc--CcccCCCcccceEEEeeCccc
Q 048438           13 GTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLN--AHKWFFATLDCCCLWATNPEY   90 (239)
Q Consensus        13 gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~--~hK~l~~P~g~g~l~~~~~~~   90 (239)
                      .++.+|.+.|+++|.++|+++|+++|+|+||+.|.. .+. +  ..+ ..+|+++++  .||+++++...|+++.+++..
T Consensus       130 ~~n~~G~~~~l~~i~~l~~~~~~~li~D~a~~~g~~-~~~-~--~~~-~~~d~~~~S~~~~K~l~~~g~gg~~~~~~~~~  204 (373)
T 3frk_A          130 AVHLYGQPADMDEIKRIAKKYNLKLIEDAAQAHGSL-YKG-M--KVG-SLGDAAGFSFYPAKNLGSLGDGGAVVTNDKDL  204 (373)
T ss_dssp             EECCTTCCCCHHHHHHHHHHHTCEEEEECTTCTTCE-ETT-E--ETT-SSSSEEEEECCTTSSSCCSSSCEEEEESCHHH
T ss_pred             EECCCcCcccHHHHHHHHHHcCCEEEEECCcccCCE-ECC-E--ecc-ccccEEEEeCcCCCccCccceeEEEEeCCHHH
Confidence            456899999999999999999999999999997765 221 1  111 126787777  669987634456666554433


Q ss_pred             ccccc--cCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Q 048438           91 LKNKA--TESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVV  159 (239)
Q Consensus        91 l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~  159 (239)
                      .....  ...+....+  .....+..+....+..++.....++++++.++..++++++.+.|++++ +++.
T Consensus       205 ~~~~~~~~~~g~~~~~--~~~~~g~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~  272 (373)
T 3frk_A          205 AEKIKALSNYGSEKKY--HHIYKGFNSRLDELQAGFLRVKLKYLDKWNEERRKIAQKYIAGINNPN-VIIP  272 (373)
T ss_dssp             HHHHHHHHBTTCSBTT--BCCSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCCTT-EECC
T ss_pred             HHHHHHHHhcCcccCC--ccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-eEec
Confidence            21111  000000000  011112222223333333333345667788888899999999999875 6654

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=99.45  E-value=2.8e-13  Score=116.86  Aligned_cols=150  Identities=14%  Similarity=0.242  Sum_probs=97.7

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ce
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CC   81 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g   81 (239)
                      .+.+|+++..+|.+|.+.|+++|+++|++||+++|+|++|+.+....+     . .+ ++|+++.++||++++|.+  +|
T Consensus       149 ~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~-----~-~~-~~di~~~s~sK~~~~~g~~~~G  221 (398)
T 2rfv_A          149 ETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQP-----L-QL-GADIVVHSVTKYINGHGDVIGG  221 (398)
T ss_dssp             TEEEEEEESSBTTTTBCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCG-----G-GG-TCSEEEEETTTTTTCSSCCCCE
T ss_pred             CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCCc-----h-hh-CCcEEEEeCcccccCCCCceEE
Confidence            356788889999999999999999999999999999999987755322     1 12 389999999999988877  68


Q ss_pred             EEEeeCccccc-ccccCCCCccCCCCceecC-CCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE--
Q 048438           82 CLWATNPEYLK-NKATESKPVVDYKDWQITL-SRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE--  157 (239)
Q Consensus        82 ~l~~~~~~~l~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~--  157 (239)
                      +++.++ +.+. ....          +.... +.....+..+.++..+.  .+..++++..+.++++.+.|++.+.+.  
T Consensus       222 ~~~~~~-~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~l~~~l~~~~~v~~~  288 (398)
T 2rfv_A          222 IIVGKQ-EFIDQARFV----------GLKDITGGCMSPFNAWLTLRGVK--TLGIRMERHCENALKIARFLEGHPSITRV  288 (398)
T ss_dssp             EEEECH-HHHHHHHHT----------HHHHTTCCCCCHHHHHHHHHHHT--THHHHHHHHHHHHHHHHHHHHTCTTEEEE
T ss_pred             EEEECH-HHHHHHHHH----------HHHhCCCCCCCHHHHHHHHhhhh--hHHHHHHHHHHHHHHHHHHHHcCCCeeEE
Confidence            887753 3332 1110          00001 11122344444444332  234455556667777777777654332  


Q ss_pred             ------------EEcC---CCeeEEEEEEcC
Q 048438          158 ------------VVFP---CHFAVVCFRVSP  173 (239)
Q Consensus       158 ------------~~~~---~~~~iv~f~~~~  173 (239)
                                  +..+   ...++++|.+++
T Consensus       289 ~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~  319 (398)
T 2rfv_A          289 YYPGLSSHPQYELGQRQMSLPGGIISFEIAG  319 (398)
T ss_dssp             ECTTSTTSTTHHHHHHHCSSCCSEEEEEETT
T ss_pred             ECCCCCCCccHHHHHhhCCCCceEEEEEEcC
Confidence                        2211   247899998864

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=99.45  E-value=1.7e-13  Score=118.41  Aligned_cols=155  Identities=12%  Similarity=0.099  Sum_probs=98.0

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLW   84 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~   84 (239)
                      |.+|+++..+  .|...|+++|.++|++||+++++|++|+.+......+..   .+..+|+++.++||++++|.| |+++
T Consensus       170 ~~~v~~~~~~--~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~---~~~~~di~~~s~sK~~~g~~g-g~~~  243 (420)
T 3gbx_A          170 PKMIIGGFSA--YSGVVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPN---PVPHAHVVTTTTHKTLAGPRG-GLIL  243 (420)
T ss_dssp             CSEEEECCTT--CCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCC---STTTSSEEEEESSGGGCSCSC-EEEE
T ss_pred             CeEEEEecCc--cCCccCHHHHHHHHHHcCCEEEEECCcchhceecccCCc---ccccCCEEEeecccCCCCCCc-eEEE
Confidence            4455555433  467899999999999999999999999766553221111   122489999999999988886 7766


Q ss_pred             eeC--cccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcC
Q 048438           85 ATN--PEYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFP  161 (239)
Q Consensus        85 ~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~  161 (239)
                      ..+  ..+.......   .   ..+. .++.. ....++..++..+..+.++++.++..++++++.+.|.+ .|++++.+
T Consensus       244 ~~~~~~~~~~~~~~~---~---~~~~-~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~  315 (420)
T 3gbx_A          244 AKGGDEELYKKLNSA---V---FPSA-QGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLN-RGYKVVSG  315 (420)
T ss_dssp             ESSCCHHHHHHHHHH---H---C-----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH-TTCEEGGG
T ss_pred             EcCCcHHHHHHhhhh---c---CCCC-CCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh-cCCeeccC
Confidence            644  1222211100   0   0000 00111 11223333444444466778888889999999999988 58988754


Q ss_pred             -CCeeEEEEEEcC
Q 048438          162 -CHFAVVCFRVSP  173 (239)
Q Consensus       162 -~~~~iv~f~~~~  173 (239)
                       ...+++.+.+++
T Consensus       316 ~~~~~~~~~~~~~  328 (420)
T 3gbx_A          316 GTENHLFLLDLVD  328 (420)
T ss_dssp             SCSSSEEEEECGG
T ss_pred             CCCCeEEEEEcCC
Confidence             456777777754

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=99.45  E-value=1.3e-12  Score=112.62  Aligned_cols=150  Identities=14%  Similarity=0.167  Sum_probs=100.2

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ceE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCC   82 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~   82 (239)
                      +-+|++...+|.+|.+.|+++|+++|+++|+++++|++|+.+....+     +. + ++|+++.++||++++|.+  +|+
T Consensus       145 ~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~livD~~~~~~~~~~~-----~~-~-~~di~~~S~sK~~~~~~~~~~G~  217 (389)
T 3acz_A          145 TKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLKP-----LE-L-GADIALHSVSKYINGHGDVIGGV  217 (389)
T ss_dssp             EEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTTCCG-----GG-T-TCSEEEEETTTTTTCSSCCCCEE
T ss_pred             CeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccccCc-----cc-c-CCeEEEECChhhccCCCCceeEE
Confidence            56788888999999999999999999999999999999987653211     11 2 499999999999999987  688


Q ss_pred             EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc-C
Q 048438           83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF-P  161 (239)
Q Consensus        83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~-~  161 (239)
                      ++.++++.+......          ....+........|.+++.+  +.+..++++..+.++++.+.|++.+.++-+. +
T Consensus       218 v~~~~~~~~~~l~~~----------~~~~g~~~~~~~~~~~~~~l--~~l~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~  285 (389)
T 3acz_A          218 SSAKTAEDIATIKFY----------RKDAGSLMAPMDAFLCARGM--KTLPIRMQIHMENGLKVAKFLEQHEKIVKVNHP  285 (389)
T ss_dssp             EEESSHHHHHHHHHH----------HHHHCCCCCHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHHCTTEEEEECT
T ss_pred             EEECcHHHHHHHHHH----------HHhcCCCCCHHHHHHHHcCc--cHHHHHHHHHHHHHHHHHHHHHcCCCeeEEECC
Confidence            887652443322110          00011112334455554443  3345566667777888888887765544221 1


Q ss_pred             ----------------CCeeEEEEEEcC
Q 048438          162 ----------------CHFAVVCFRVSP  173 (239)
Q Consensus       162 ----------------~~~~iv~f~~~~  173 (239)
                                      ...++++|.+++
T Consensus       286 ~L~~~~~~~~~~~~~~g~g~~~~~~l~~  313 (389)
T 3acz_A          286 GLESFPGHDIAKKQMTGYGSTFLFEMKS  313 (389)
T ss_dssp             TSTTSTTHHHHHHHCSSCCSEEEEEESS
T ss_pred             CCCCCccHHHHHhhCCCCCeEEEEEECC
Confidence                            125789998864

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=99.43  E-value=4.3e-12  Score=110.36  Aligned_cols=206  Identities=15%  Similarity=0.091  Sum_probs=118.1

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccc-------cccCCCCCcceEEEcCcccC
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFR-------HFIDGVEGADSFSLNAHKWF   74 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~-------~~~~~~~~~Ds~~~~~hK~l   74 (239)
                      +-+|+++..+|.+|.+.|   +++|+++|++||+++++|++|+.....-...-       ..+.+....++++.++||++
T Consensus       183 ~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~  262 (437)
T 3g0t_A          183 FCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAF  262 (437)
T ss_dssp             CCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTT
T ss_pred             ceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhccCCCCCcEEEEEcCccCC
Confidence            456667778999999987   77789999999999999999986433210000       01112124778999999998


Q ss_pred             C-CcccceEEEeeCccccc-ccc---cC-CCCccC---CCCceecCCCCCChHHHHHHHHHhCHHH-----HHHHHHHHH
Q 048438           75 F-ATLDCCCLWATNPEYLK-NKA---TE-SKPVVD---YKDWQITLSRSFRSLKLWFVIRNYGMEN-----LRHFLRSHV  140 (239)
Q Consensus        75 ~-~P~g~g~l~~~~~~~l~-~~~---~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~g~~g-----~~~~~~~~~  140 (239)
                      + ....+|+++.. ++.+. ...   .. ......   .........-....+....+...+....     ++++.++..
T Consensus       263 ~~~G~r~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~  341 (437)
T 3g0t_A          263 SYAGQRIGVLMIS-GKLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAMLKACNDGEYNFRDSVIEYG  341 (437)
T ss_dssp             SCGGGCCEEEEEC-HHHHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHHHHHHHHHHHTTSCCHHHHHHHHH
T ss_pred             CCccceeEEEEEC-HHHhhhhhhcccccccccchhHHHHHHHHhhhcCCCCHHHHHHHHHHHhCcHhHHHHHHHHHHHHH
Confidence            6 33447888774 33333 200   00 000000   0000000000111233333322222222     677788888


Q ss_pred             HHHHHHHHHHhCCCCeEEE------cC-CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcE
Q 048438          141 NMARLFERLVSGDKRFEVV------FP-CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKA  213 (239)
Q Consensus       141 ~la~~l~~~l~~~~g~~~~------~~-~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~  213 (239)
                      ++.+++.+.|++. |++++      .+ ...+.+.+.+++..                        ...+.+.|.++|..
T Consensus       342 ~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~l~~~L~~~gi~  396 (437)
T 3g0t_A          342 RKARIMKKMFLDN-GFNIVYDKDGNEPLADGFYFTVGYKGMD------------------------SSKLIEKFVRYGMC  396 (437)
T ss_dssp             HHHHHHHHHHHTT-TEEESSCEETTEECCSSSEEEEEETTCC------------------------HHHHHHHHHHTTEE
T ss_pred             HHHHHHHHHHHHc-CCEEeccccCCCCCceeEEEEEecCCCC------------------------HHHHHHHHHHcCeE
Confidence            9999999999998 99987      35 55667777876321                        12566777777665


Q ss_pred             EEEEEEEC-C-EeEEEEEecCCCCCc
Q 048438          214 YMTNVVLG-G-IYAIRFATGATLTEE  237 (239)
Q Consensus       214 ~~~~~~~~-g-~~~lR~~~~~~~t~~  237 (239)
                      ..+..... . ..++|++++.. |.+
T Consensus       397 v~~~~~~~~~~~~~iRis~~~~-~~e  421 (437)
T 3g0t_A          397 AITLKTTGSKRNEAMRICTSLL-PES  421 (437)
T ss_dssp             CEESTTTTCCCTTCEEEECSSS-CGG
T ss_pred             EeeccccCCCCCCEEEEEEecC-CHH
Confidence            44322111 1 16799998743 443

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=99.43  E-value=8e-13  Score=113.21  Aligned_cols=191  Identities=13%  Similarity=0.112  Sum_probs=113.0

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCC----CCcceEEEcCcccCCCc
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGV----EGADSFSLNAHKWFFAT   77 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~----~~~Ds~~~~~hK~l~~P   77 (239)
                      +-+|+++..+|.+|.+.|   +++|+++|++||+++++|++|+.+......... +..+    ...|+++.++||+++ +
T Consensus       164 ~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~sK~~~-~  241 (388)
T 1j32_A          164 TKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLS-IGAASPEAYERSVVCSGFAKTYA-M  241 (388)
T ss_dssp             EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCC-GGGSCHHHHHTEEEEEESTTTTT-C
T ss_pred             ceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCC-HHHccccccCCEEEEeechhccC-C
Confidence            556777888899999854   999999999999999999999875432111100 1111    137899999999974 4


Q ss_pred             cc--ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHhCC
Q 048438           78 LD--CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNY--GMENLRHFLRSHVNMARLFERLVSGD  153 (239)
Q Consensus        78 ~g--~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--g~~g~~~~~~~~~~la~~l~~~l~~~  153 (239)
                      .|  +|+++.+ ++.+......          .....-....+..+.++..+  +.+.+++..++..++.+++.+.|+++
T Consensus       242 ~G~r~G~~~~~-~~~~~~l~~~----------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~  310 (388)
T 1j32_A          242 TGWRVGFLAGP-VPLVKAATKI----------QGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAM  310 (388)
T ss_dssp             TTTCCEEEECC-HHHHHHHHHH----------HHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             cccceEEEEeC-HHHHHHHHHH----------HhhcccCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            46  8888864 3332221100          00000011123333222222  34556777888889999999999998


Q ss_pred             CCeEEEcCCCeeE-EEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHh-cCcEEEEEEEECCEeEEEEEec
Q 048438          154 KRFEVVFPCHFAV-VCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINA-SGKAYMTNVVLGGIYAIRFATG  231 (239)
Q Consensus       154 ~g~~~~~~~~~~i-v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~~g~~~lR~~~~  231 (239)
                      +|++++.+ ..+. +.+.++..+.               +       ...+.+.|.+ .|..+..........++|+++.
T Consensus       311 ~g~~~~~~-~~~~~~~~~~~~~~~---------------~-------~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~  367 (388)
T 1j32_A          311 PGLECPKP-DGAFYMFPSIAKTGR---------------S-------SLDFCSELLDQHQVATVPGAAFGADDCIRLSYA  367 (388)
T ss_dssp             TTCBCCCC-CBTTEECCBCGGGTC---------------C-------HHHHHHHHHHHHCEECEEGGGGTCTTBEEEECC
T ss_pred             CCCcccCC-CeeEEEEEecCCCCC---------------C-------HHHHHHHHHHhCCEEEeChhhhCCCCcEEEEec
Confidence            88887644 3333 3333331000               0       1256666765 4655443222222467999986

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=99.42  E-value=3.8e-12  Score=108.44  Aligned_cols=186  Identities=11%  Similarity=0.021  Sum_probs=111.3

Q ss_pred             ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEeccccc-ccccCcccccccCCCCCcceEEEcCcccCCCcc
Q 048438            4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAG-SACIFPEFRHFIDGVEGADSFSLNAHKWFFATL   78 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~-~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~   78 (239)
                      .+.+|+++..++.+|.+.|    +++|.++|++||+++++|++|+. +... ........+. .+|++++|  |+++++.
T Consensus       172 ~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~-~~d~~s~S--K~~~~g~  247 (375)
T 2eh6_A          172 ETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTG-EFYAYQHFNL-KPDVIALA--KGLGGGV  247 (375)
T ss_dssp             TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTS-SSSGGGGGTC-CCSEEEEC--GGGGTTS
T ss_pred             CeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCC-cchhhhhcCC-CCCEEEEc--ccccCCC
Confidence            3567777888899999988    99999999999999999999983 2211 0010001122 38888777  9888888


Q ss_pred             cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 048438           79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEV  158 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~  158 (239)
                      ++|++++++ +.+.......        .....+.  ..+....++..+..  +++..++..++++++.+.|++++... 
T Consensus       248 ~~G~~~~~~-~~~~~~~~~~--------~~~~~~~--~~~~~~~~~~~l~~--~~~~~~~~~~~~~~l~~~L~~~~~~~-  313 (375)
T 2eh6_A          248 PIGAILARE-EVAQSFTPGS--------HGSTFGG--NPLACRAGTVVVDE--VEKLLPHVREVGNYFKEKLKELGKGK-  313 (375)
T ss_dssp             CCEEEEEEH-HHHTTCCTTS--------CCCSSTT--CHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTTSSE-
T ss_pred             CeEEEEEcH-HHHhhhcCCC--------CCCCCCC--CHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhcCC-
Confidence            899998864 3333221100        0000111  22333222222211  12566777788999999998864322 


Q ss_pred             EcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCCc
Q 048438          159 VFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTEE  237 (239)
Q Consensus       159 ~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~  237 (239)
                      + ++..+++.+.++...                     .    .+.+.|.++|......    +..++|++++...|.+
T Consensus       314 ~-~~~g~~~~~~~~~~~---------------------~----~~~~~l~~~gi~~~~~----~~~~iRi~~~~~~~~~  362 (375)
T 2eh6_A          314 V-KGRGLMLGLELEREC---------------------K----DYVLKALEKGLLINCT----AGKVLRFLPPLIIQKE  362 (375)
T ss_dssp             E-EEETTEEEEECSSCC---------------------H----HHHHHHHHTTEECEEE----TTTEEEECCCTTCCHH
T ss_pred             c-eEEEEEEEEEEcCcH---------------------H----HHHHHHHHCCCEEecC----CCCEEEEECCCCCCHH
Confidence            2 334567777765321                     1    4566666666554322    4568999976545443

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=99.42  E-value=1.8e-13  Score=118.53  Aligned_cols=150  Identities=15%  Similarity=0.162  Sum_probs=96.9

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhC-CEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ce
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFG-IWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CC   81 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~g-i~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g   81 (239)
                      +-+|++...+|.+|.+.|+++|+++|+++| ++++||.+|+.+....+     +. + ++|+++.++||++++|.+  +|
T Consensus       152 t~~v~~~~p~nptG~~~~l~~i~~la~~~g~~~livD~~~~~~~~~~~-----~~-~-~~div~~S~sK~~~g~~~~~~G  224 (403)
T 3cog_A          152 TKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQRP-----LA-L-GADISMYSATKYMNGHSDVVMG  224 (403)
T ss_dssp             EEEEEEESSCTTTCCCCCHHHHHHHHTSSSCCEEEEECTTTCTTTCCT-----TT-T-TCSEEEEETTTTTTCSSCCCCE
T ss_pred             CeEEEEECCCCCCCeeeCHHHHHHHHHHcCCCEEEEECCCcccccCCc-----cc-c-CCeEEEEcChhhccCCCCCeEE
Confidence            567788889999999999999999999999 99999999988754222     11 2 499999999999999987  48


Q ss_pred             EEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCe-----
Q 048438           82 CLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRF-----  156 (239)
Q Consensus        82 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~-----  156 (239)
                      +++.+++........          +....+.....+..|.+++.+  +.+..++++..+.+..+.+.|++.+.+     
T Consensus       225 ~v~~~~~~l~~~l~~----------~~~~~g~~~~~~~~~~~~~~l--~~l~~r~~~~~~n~~~l~~~l~~~~~v~~~~~  292 (403)
T 3cog_A          225 LVSVNCESLHNRLRF----------LQNSLGAVPSPIDCYLCNRGL--KTLHVRMEKHFKNGMAVAQFLESNPWVEKVIY  292 (403)
T ss_dssp             EEEECCHHHHHHHHH----------HHHHHCCCCCHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEC
T ss_pred             EEEECcHHHHHHHHH----------HHHhcCCCCCHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEC
Confidence            888765544332210          000011112234445544433  233445555566666666666655433     


Q ss_pred             ---------EEEcC---CCeeEEEEEEcC
Q 048438          157 ---------EVVFP---CHFAVVCFRVSP  173 (239)
Q Consensus       157 ---------~~~~~---~~~~iv~f~~~~  173 (239)
                               ++..+   ...++++|.+++
T Consensus       293 ~~L~~~p~~~~~~~~~~~~g~~~~~~l~~  321 (403)
T 3cog_A          293 PGLPSHPQHELVKRQCTGCTGMVTFYIKG  321 (403)
T ss_dssp             TTSTTSTTHHHHHHHCSCCCSEEEEEESS
T ss_pred             CCCCCCCcHHHHHhcCCCCceEEEEEecC
Confidence                     22211   126789998864

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.41  E-value=9.1e-13  Score=113.76  Aligned_cols=149  Identities=17%  Similarity=0.209  Sum_probs=99.2

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHh----CCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc-
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQF----GIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD-   79 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~----gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g-   79 (239)
                      +.+|++...+|.+|.+.|+++|+++|+++    |+++|+|++|+.+... +     ...+ ++|+++.++||+++ |.| 
T Consensus       139 t~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~~~~livD~a~~~~~~~-~-----~~~~-~~di~~~S~sK~~g-~~G~  210 (393)
T 1n8p_A          139 TKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYIS-N-----PLNF-GADIVVHSATKYIN-GHSD  210 (393)
T ss_dssp             EEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHC-C-----GGGG-TCSEEEEETTTTTT-CSSC
T ss_pred             ceEEEEECCCCCcceecCHHHHHHHHHHhCCCCCCEEEEeCCccccccC-C-----HHHc-CCeEEEEECccccc-CCCC
Confidence            56788888999999999999999999999    9999999999987653 1     1122 39999999999976 545 


Q ss_pred             -c-eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCC-e
Q 048438           80 -C-CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKR-F  156 (239)
Q Consensus        80 -~-g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g-~  156 (239)
                       . |+++.++++.+.....          .....+........+.+++.+  +.+..++++..+.++++.+.|++.+. +
T Consensus       211 rigG~~~~~~~~~~~~l~~----------~~~~~g~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~l~~~L~~~~~~l  278 (393)
T 1n8p_A          211 VVLGVLATNNKPLYERLQF----------LQNAIGAIPSPFDAWLTHRGL--KTLHLRVRQAALSANKIAEFLAADKENV  278 (393)
T ss_dssp             CCCEEEEESCHHHHHHHHH----------HHHHHCCCCCHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHTSCTTTE
T ss_pred             ceeEEEEeCCHHHHHHHHH----------HHHhcCCCCCHHHHHHHHhcc--chHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence             5 7776654444333211          000111222334444433332  33456667777788888888888765 5


Q ss_pred             EEE-cC-----C------------C-eeEEEEEEcC
Q 048438          157 EVV-FP-----C------------H-FAVVCFRVSP  173 (239)
Q Consensus       157 ~~~-~~-----~------------~-~~iv~f~~~~  173 (239)
                      .-+ .|     +            . .++++|.+++
T Consensus       279 ~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~  314 (393)
T 1n8p_A          279 VAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKG  314 (393)
T ss_dssp             EEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESS
T ss_pred             eEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCC
Confidence            422 22     1            2 6799999975

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=99.41  E-value=3.6e-12  Score=109.48  Aligned_cols=188  Identities=10%  Similarity=0.030  Sum_probs=111.0

Q ss_pred             cEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438            5 PLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC   80 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~   80 (239)
                      +.+|+++...+.+|.+.|    +++|+++|++||+++++|++|++.............++ .+|++  ++||+++++.++
T Consensus       186 ~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~-~~d~~--s~sK~~~~g~~~  262 (395)
T 1vef_A          186 TAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGI-VPDIL--TLAKALGGGVPL  262 (395)
T ss_dssp             EEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTC-CCSEE--EECGGGGTTSSC
T ss_pred             EEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchhHhhhcCC-CCCEE--EEcccccCCCce
Confidence            567777777778999888    99999999999999999999983211111000012232 37877  459999988889


Q ss_pred             eEEEeeCcccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCC--eE
Q 048438           81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKR--FE  157 (239)
Q Consensus        81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g--~~  157 (239)
                      |++++++ +.+......        ......+.. ........+++.+..   ++..++..++++++.+.|++++.  +.
T Consensus       263 G~~~~~~-~~~~~l~~~--------~~~~~~~~~~~~~~a~~~al~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~  330 (395)
T 1vef_A          263 GVAVMRE-EVARSMPKG--------GHGTTFGGNPLAMAAGVAAIRYLER---TRLWERAAELGPWFMEKLRAIPSPKIR  330 (395)
T ss_dssp             EEEEEEH-HHHHTSCTT--------SSCCSSTTCHHHHHHHHHHHHHHHH---HTTHHHHHHHHHHHHHHHHTSCCTTEE
T ss_pred             EEEEehH-HHHhhhccC--------CcCCCcCCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHhhcCceE
Confidence            9999864 333322110        000000001 112223334444322   34566777899999999988632  11


Q ss_pred             EEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHH-hcCcEEEEEEEECCEeEEEEEecCCCCC
Q 048438          158 VVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESIN-ASGKAYMTNVVLGGIYAIRFATGATLTE  236 (239)
Q Consensus       158 ~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~g~~~lR~~~~~~~t~  236 (239)
                      . .++..+++.|.++...                     .    .+.+.|. ++|..+..    .+..++|++++...|.
T Consensus       331 ~-~~~~g~~~~~~~~~~~---------------------~----~l~~~l~~~~gi~v~~----~~~~~iRi~~~~~~~~  380 (395)
T 1vef_A          331 E-VRGMGLMVGLELKEKA---------------------A----PYIARLEKEHRVLALQ----AGPTVIRFLPPLVIEK  380 (395)
T ss_dssp             E-EEEETTEEEEEESSCS---------------------H----HHHHHHHHHHCEECEE----SSTTEEEECCCTTCCH
T ss_pred             E-EEEEEEEEEEEEcChH---------------------H----HHHHHHHHHCCeEEec----CCCCEEEEeCCCCCCH
Confidence            1 1234467888875421                     2    4566666 56654432    2467899997654444


Q ss_pred             c
Q 048438          237 E  237 (239)
Q Consensus       237 ~  237 (239)
                      +
T Consensus       381 ~  381 (395)
T 1vef_A          381 E  381 (395)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*

Probab=99.41  E-value=1.6e-11  Score=106.35  Aligned_cols=150  Identities=15%  Similarity=0.255  Sum_probs=100.0

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHH-hCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ce
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQ-FGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CC   81 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~-~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g   81 (239)
                      +-+|+++..+|.+|.+.|+++|+++|++ +|+++++|++|+.+....+     .. + ++|+++.++||++++|.+  +|
T Consensus       148 t~~v~l~~p~NptG~v~~l~~i~~la~~~~~~~li~De~~~~~~~~~~-----~~-~-~~di~~~S~sK~~~~~g~ri~G  220 (404)
T 1e5e_A          148 TKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMITNP-----VD-F-GVDVVVHSATKYINGHTDVVAG  220 (404)
T ss_dssp             EEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTTCCG-----GG-G-TCSEEEEETTTTTTCSSCCCCE
T ss_pred             CcEEEEECCCCCCCcccCHHHHHHHHHhhcCCEEEEECCCchhhhCCc-----cc-c-CCEEEEEcCccccCCCCCCeEE
Confidence            5678888899999999999999999999 9999999999997764322     11 2 399999999999999877  68


Q ss_pred             EEEeeCccccc-ccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE-EE
Q 048438           82 CLWATNPEYLK-NKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE-VV  159 (239)
Q Consensus        82 ~l~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~-~~  159 (239)
                      ++++++ +.+. ......      ..+   .+.....+..|.++..+.  .+..+.++..++++++.+.|++.+.+. ++
T Consensus       221 ~~~~~~-~~~~~~l~~~~------~~~---~g~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~  288 (404)
T 1e5e_A          221 LICGKA-DLLQQIRMVGI------KDI---TGSVISPHDAWLITRGLS--TLNIRMKAESENAMKVAEYLKSHPAVEKVY  288 (404)
T ss_dssp             EEEECH-HHHHHHHHTCC------CCC---CCCCCCHHHHHHHHHHHT--THHHHHHHHHHHHHHHHHHHHTCTTEEEEE
T ss_pred             EEEECH-HHHHHHHHHHH------HhC---CCCCCCHHHHHHHHHhHh--HHHHHHHHHHHHHHHHHHHHHhCCCeeEEE
Confidence            888753 3333 221100      001   011122344455544432  245566666778888888888765553 22


Q ss_pred             cC------------C----CeeEEEEEEcC
Q 048438          160 FP------------C----HFAVVCFRVSP  173 (239)
Q Consensus       160 ~~------------~----~~~iv~f~~~~  173 (239)
                      .+            +    ..++++|.+++
T Consensus       289 ~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~  318 (404)
T 1e5e_A          289 YPGFEDHEGHDIAKKQMRMYGSMITFILKS  318 (404)
T ss_dssp             CTTCSSSTTHHHHHHHCSSCCSEEEEEETT
T ss_pred             CCCCCCCccHHHHHhhCCCCceEEEEEeCC
Confidence            21            1    27889998753

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*

Probab=99.40  E-value=7.3e-12  Score=108.90  Aligned_cols=149  Identities=11%  Similarity=0.128  Sum_probs=101.7

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHH--hCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--c
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQ--FGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--C   80 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~--~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~   80 (239)
                      +.+|++...+|.+|.+.|+++|+++|++  +|+++|||++|+.+....+     +. + ++|++++++||+++++.+  .
T Consensus       168 tklV~~e~~~NptG~v~dl~~I~~la~~~~~g~~livD~a~a~~~~~~p-----~~-~-g~Div~~S~sK~lg~~g~~~~  240 (415)
T 2fq6_A          168 TKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKA-----LD-F-GIDVSIQAATKYLVGHSDAMI  240 (415)
T ss_dssp             EEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSSCG-----GG-G-TCSEEEEETTTTTTCSSSCCC
T ss_pred             CcEEEEECCCCCCCEeecHHHHHHHHHhhcCCCEEEEECCCcccccCCc-----cc-c-CCeEEEEeCccccCCCCCceE
Confidence            5677788889999999999999999999  9999999999986533212     11 1 499999999999887654  5


Q ss_pred             eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE-
Q 048438           81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVV-  159 (239)
Q Consensus        81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~-  159 (239)
                      |+++.++ +.+.....          +....+........|..++.  .+.+..++++..++++++.+.|++.|.++-+ 
T Consensus       241 G~l~~~~-~~~~~l~~----------~~~~~G~~~~~~~a~~~~~~--l~~l~~r~~~~~~n~~~l~~~L~~~~~v~~v~  307 (415)
T 2fq6_A          241 GTAVCNA-RCWEQLRE----------NAYLMGQMVDADTAYITSRG--LRTLGVRLRQHHESSLKVAEWLAEHPQVARVN  307 (415)
T ss_dssp             EEEEECT-TTHHHHHH----------HHHHTTCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTCTTEEEEE
T ss_pred             EEEEeCH-HHHHHHHH----------HHHhcCCCCCHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHcCCCeeEEE
Confidence            7777654 33322210          00001122223344444432  3456677788888899999999888776532 


Q ss_pred             cC----------------CCeeEEEEEEcC
Q 048438          160 FP----------------CHFAVVCFRVSP  173 (239)
Q Consensus       160 ~~----------------~~~~iv~f~~~~  173 (239)
                      .|                ...++++|.+++
T Consensus       308 ~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g  337 (415)
T 2fq6_A          308 HPALPGSKGHEFWKRDFTGSSGLFSFVLKK  337 (415)
T ss_dssp             CTTSTTSTTHHHHHHHCSCCCSEEEEEESS
T ss_pred             CCCCCCCccHHHHHhhCCCCceEEEEEECC
Confidence            22                136799999975

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*

Probab=99.40  E-value=2e-13  Score=115.14  Aligned_cols=189  Identities=18%  Similarity=0.201  Sum_probs=107.2

Q ss_pred             ccEEEEEecCCCCc-ccccCh---hHHHHHHHHhCCEEEEecccccccccCc--ccccccCCCCCcceEEEcCcccCCCc
Q 048438            4 IPLFLCATIGTTAI-TAVDPL---KPLCDVAKQFGIWVHVDAAYAGSACIFP--EFRHFIDGVEGADSFSLNAHKWFFAT   77 (239)
Q Consensus         4 ~p~~vv~t~gtt~~-G~i~pl---~~i~~i~~~~gi~lhvD~A~~~~~~~~~--~~~~~~~~~~~~Ds~~~~~hK~l~~P   77 (239)
                      .+.+|+.+..+|.+ |.+.|+   ++|+++|++||+++++|+||..+.....  .......   .+|++++++||++++|
T Consensus       132 ~~~~v~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~~---~~d~~~~s~sK~l~~~  208 (347)
T 1jg8_A          132 RTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAG---YADSVMFCLSKGLCAP  208 (347)
T ss_dssp             CEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHH---TCSEEEEESSSTTCCS
T ss_pred             CceEEEEeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHhcc---cccEEEEecccccCCC
Confidence            46677788888888 998764   6889999999999999999854322110  0111111   3899999999999887


Q ss_pred             ccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHH---HHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 048438           78 LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLW---FVIRNYGMENLRHFLRSHVNMARLFERLVSGDK  154 (239)
Q Consensus        78 ~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~  154 (239)
                      .  |.+++.+++++......       . .....+.+..++...   .+++.+     .+.+++..+.++++.+.|++. 
T Consensus       209 ~--G~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~l~~~L~~~-  272 (347)
T 1jg8_A          209 V--GSVVVGDRDFIERARKA-------R-KMLGGGMRQAGVLAAAGIIALTKM-----VDRLKEDHENARFLALKLKEI-  272 (347)
T ss_dssp             S--CEEEEECHHHHHHHHHH-------H-HHHTCCCSSTHHHHHHHHHHHHHS-----STTHHHHHHHHHHHHHHHHHH-
T ss_pred             c--eEEEEcCHHHHHHHHHH-------H-HHcCCchhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhc-
Confidence            4  43444444443322100       0 000001111112111   123221     122333445677888888876 


Q ss_pred             CeEEE-cCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCC
Q 048438          155 RFEVV-FPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGAT  233 (239)
Q Consensus       155 g~~~~-~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~  233 (239)
                      |+++. .++..+++.+.++..+.               +       ...+.++|.++|......    +...+|++++..
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~---------------~-------~~~~~~~l~~~gi~v~~~----~~~~iRl~~~~~  326 (347)
T 1jg8_A          273 GYSVNPEDVKTNMVILRTDNLKV---------------N-------AHGFIEALRNSGVLANAV----SDTEIRLVTHKD  326 (347)
T ss_dssp             TCBCCGGGCCSSEEEEECTTSSS---------------C-------HHHHHHHHHHHTEECEEE----ETTEEEEECCTT
T ss_pred             CceeccCCCcceEEEEEcccccC---------------C-------HHHHHHHHHHCCCEEecC----CCCeEEEEeCCC
Confidence            77653 34567888888863111               0       125666666666554432    235799998766


Q ss_pred             CCCc
Q 048438          234 LTEE  237 (239)
Q Consensus       234 ~t~~  237 (239)
                      .|.+
T Consensus       327 ~~~e  330 (347)
T 1jg8_A          327 VSRN  330 (347)
T ss_dssp             SCHH
T ss_pred             CCHH
Confidence            5554

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=99.40  E-value=1.1e-12  Score=112.22  Aligned_cols=191  Identities=10%  Similarity=0.006  Sum_probs=115.4

Q ss_pred             ccEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc-
Q 048438            4 IPLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD-   79 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g-   79 (239)
                      .+.+|+++..+|.+|.+.|   +++|+++|++||+++++|++|+.+.. .........-....|+++.++||+++.| | 
T Consensus       152 ~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~-g~~~~~~~~~~~~~~~~~~s~sK~~~~~-G~  229 (381)
T 1v2d_A          152 RTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYY-GERPRRLREFAPERTFTVGSAGKRLEAT-GY  229 (381)
T ss_dssp             TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBS-SSCCCCHHHHCTTTEEEEEEHHHHTTCG-GG
T ss_pred             CCEEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCcccccc-CCCCCCHHHhcCCCEEEEeechhhcCCc-cc
Confidence            3567777888999999876   89999999999999999999986543 1111111100124899999999997534 5 


Q ss_pred             -ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438           80 -CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYG-MENLRHFLRSHVNMARLFERLVSGDKRFE  157 (239)
Q Consensus        80 -~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~g~~~~~~~~~~la~~l~~~l~~~~g~~  157 (239)
                       +|+++++ ++.+......    .....++   ........+..+++... .+.+++..++..++++++.+.|++. |++
T Consensus       230 r~G~~~~~-~~~~~~~~~~----~~~~~~~---~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~  300 (381)
T 1v2d_A          230 RVGWIVGP-KEFMPRLAGM----RQWTSFS---APTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM-GLR  300 (381)
T ss_dssp             CCEEEECC-TTTHHHHHHH----HHHHTSS---CCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred             ceEEEEeC-HHHHHHHHHH----HhhcccC---CCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHC-CCE
Confidence             7888874 3333222100    0000011   00011122223343221 3456777888889999999999984 888


Q ss_pred             EEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEE----CCEeEEEEEecC
Q 048438          158 VVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVL----GGIYAIRFATGA  232 (239)
Q Consensus       158 ~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~----~g~~~lR~~~~~  232 (239)
                      ++.+.....+.+.+++.                      +     +.+.+.++|..+......    .+..++|+++..
T Consensus       301 ~~~~~~~~~~~~~~~~~----------------------~-----~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~  352 (381)
T 1v2d_A          301 VYVPEGTYFLMAELPGW----------------------D-----AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCK  352 (381)
T ss_dssp             EECCSBSSEEEEECTTC----------------------C-----HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCS
T ss_pred             ecCCCcceEEEEecChH----------------------h-----HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCC
Confidence            87654445666666431                      1     333455566554433222    135689999876

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=99.40  E-value=3.7e-12  Score=111.26  Aligned_cols=161  Identities=14%  Similarity=0.081  Sum_probs=105.3

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcc--cce
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATL--DCC   81 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~--g~g   81 (239)
                      .+-+|++...+|.+|.+.|+++|+++|+++|++++||++|+.+.+.-+    ...   ++|+++.|++|++++|.  -.|
T Consensus       167 ~t~~v~~e~p~NptG~~~dl~~i~~la~~~g~~livD~a~~~~~~~~~----~~~---g~div~~S~sK~l~g~g~~~gG  239 (430)
T 3ri6_A          167 TTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMTPPYLLEA----KRL---GVDIEVLSSTKFISGGGTSVGG  239 (430)
T ss_dssp             TEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTSCTTTCCG----GGG---TCSEEEEECCCEEETTEEECCE
T ss_pred             CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccCCh----HHc---CCEEEEECCcccccCCCCceEE
Confidence            356788888999999999999999999999999999999987765222    111   38999999999998762  345


Q ss_pred             EEEeeCc-ccccccc-cC------CCCccC--CCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHh
Q 048438           82 CLWATNP-EYLKNKA-TE------SKPVVD--YKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVS  151 (239)
Q Consensus        82 ~l~~~~~-~~l~~~~-~~------~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~  151 (239)
                      +++.+.. .+..... ..      ......  ...+....+.....+..|..++  +.+.+..++++..++++++.+.|+
T Consensus       240 ~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~~~~g~~~~~~~a~l~l~--~l~~l~~r~~~~~~na~~la~~L~  317 (430)
T 3ri6_A          240 VLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNLGPSLSPHNAYLQSL--GLETMALRIERSCQNAQELAHWLL  317 (430)
T ss_dssp             EEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHh
Confidence            5443322 2210000 00      000000  0000011122334455555554  456778888999999999999999


Q ss_pred             CCCCeEEEcCCC----------------ee-EEEEEEcC
Q 048438          152 GDKRFEVVFPCH----------------FA-VVCFRVSP  173 (239)
Q Consensus       152 ~~~g~~~~~~~~----------------~~-iv~f~~~~  173 (239)
                      +.|+++-+..|.                .+ +++|.+++
T Consensus       318 ~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~~  356 (430)
T 3ri6_A          318 SIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELES  356 (430)
T ss_dssp             TCTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECSS
T ss_pred             CCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECC
Confidence            999988554332                34 99999973

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=99.40  E-value=7.1e-13  Score=114.62  Aligned_cols=155  Identities=12%  Similarity=0.082  Sum_probs=98.5

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLW   84 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~   84 (239)
                      |-+|+++.  +..|...++++|.++|++||+++++|++|+.+...........   ..+|+++.++||++.+|.+ |+++
T Consensus       173 ~~~v~~~~--~~~~~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~---~~~di~~~s~sK~l~g~~~-g~~~  246 (425)
T 3ecd_A          173 PSLIIAGF--SAYPRKLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPV---EHAHVVTSTTHKTLRGPRG-GFVL  246 (425)
T ss_dssp             CSEEEEEC--SCCCSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGG---GTCSEEEEESSGGGCCCSC-EEEE
T ss_pred             CcEEEEcc--ccCCCcCCHHHHHHHHHHcCCEEEEECcChHhhhhcccccCch---hcCcEEEecCCcccCCCCc-EEEE
Confidence            34555543  3348999999999999999999999999877655332221112   2389999999999988874 7777


Q ss_pred             eeCcccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcC-C
Q 048438           85 ATNPEYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFP-C  162 (239)
Q Consensus        85 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~-~  162 (239)
                      ..++.........    .  . ....++.. ....++..++..+..+++++..++..++++++.+.|.+. |++++.+ .
T Consensus       247 ~~~~~~~~~~~~~----~--~-~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~  318 (425)
T 3ecd_A          247 TNDEEIAKKINSA----V--F-PGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAG-GVDLVTGGT  318 (425)
T ss_dssp             ESCHHHHHHHHHH----H--C------CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSC
T ss_pred             eCCHHHHHHHHhh----h--C-ccccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhC-CCeeccCCC
Confidence            6544332221100    0  0 00000111 112333444444444667788888889999999999984 8888754 3


Q ss_pred             CeeEEEEEEcC
Q 048438          163 HFAVVCFRVSP  173 (239)
Q Consensus       163 ~~~iv~f~~~~  173 (239)
                      ..+++.+.+++
T Consensus       319 ~~~~~~~~~~~  329 (425)
T 3ecd_A          319 DNHLLLVDLRP  329 (425)
T ss_dssp             SSSEEEEECGG
T ss_pred             CceEEEEEeCC
Confidence            56777777754

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=99.40  E-value=3e-12  Score=111.28  Aligned_cols=197  Identities=13%  Similarity=0.023  Sum_probs=117.1

Q ss_pred             ccEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCccc---ccccC-----CCCCcc--eEEEcC
Q 048438            4 IPLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEF---RHFID-----GVEGAD--SFSLNA   70 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~---~~~~~-----~~~~~D--s~~~~~   70 (239)
                      .+-+|+++..+|.+|.+.|   +++|+++|+++|+++++|.+|+.+.......   .....     ++ ..|  +++.++
T Consensus       188 ~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~viv~~s~  266 (428)
T 1iay_A          188 KVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYC-NKDLVHIVYSL  266 (428)
T ss_dssp             CEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTS-CTTSEEEEEES
T ss_pred             ceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhccccccccC-CCCcEEEEecc
Confidence            4667777888899999999   9999999999999999999998743321111   11111     11 167  788999


Q ss_pred             cccCCCc-ccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCH-----HHHHHHHHHHHHHHH
Q 048438           71 HKWFFAT-LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGM-----ENLRHFLRSHVNMAR  144 (239)
Q Consensus        71 hK~l~~P-~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-----~g~~~~~~~~~~la~  144 (239)
                      ||+++.| ..+|+++..++..+......    .  ..++      ...+....+...+..     +.+++..++..++.+
T Consensus       267 sK~~g~~Glr~G~~~~~~~~~~~~~~~~----~--~~~~------~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~  334 (428)
T 1iay_A          267 SKDMGLPGFRVGIIYSFNDDVVNCARKM----S--SFGL------VSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHK  334 (428)
T ss_dssp             TTTSSCGGGCEEEEEESCHHHHHHHHHH----H--TTSC------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcCCCCceEEEEEeCCHHHHHHHHHH----H--hccc------CCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence            9998644 22588877544433322110    0  0010      112222333333321     245667777788899


Q ss_pred             HHHHHHhCCCCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhc-CcEEEEEEEEC--
Q 048438          145 LFERLVSGDKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINAS-GKAYMTNVVLG--  221 (239)
Q Consensus       145 ~l~~~l~~~~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~--  221 (239)
                      ++.+.|++. |++++.+...+++.++++....             ..+    ......+.+.|.++ |..+.......  
T Consensus       335 ~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~~-------------~~~----~~~~~~l~~~l~~~~gi~v~~~~~~~~~  396 (428)
T 1iay_A          335 HFTNGLEVV-GIKCLKNNAGLFCWMDLRPLLR-------------EST----FDSEMSLWRVIINDVKLNVSPGSSFECQ  396 (428)
T ss_dssp             HHHHHHHHT-TCCBCCCSSSSEEEEECGGGCS-------------SSS----HHHHHHHHHHHHHTSCEECEEGGGGTCS
T ss_pred             HHHHHHHhc-CCcccCCCeeEEEEEechhhcC-------------CCc----hhHHHHHHHHHHHhCCEEEeCchhhCCC
Confidence            999999987 8876544356677788754210             000    01223577778776 55544322221  


Q ss_pred             CEeEEEEEec
Q 048438          222 GIYAIRFATG  231 (239)
Q Consensus       222 g~~~lR~~~~  231 (239)
                      +..++|+++.
T Consensus       397 ~~~~iRis~~  406 (428)
T 1iay_A          397 EPGWFRVCFA  406 (428)
T ss_dssp             SSSEEEEECS
T ss_pred             CCCEEEEEEe
Confidence            2468999987

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.39  E-value=2.9e-12  Score=110.56  Aligned_cols=155  Identities=11%  Similarity=0.073  Sum_probs=99.4

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLW   84 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~   84 (239)
                      |-+|+.+..+  .|.+.|+++|.++|++||+++++|++|+.+.........   .+..+|++++++||++.+|.| |+++
T Consensus       165 ~~~v~~~~~~--~G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~---~~~~~di~~~s~sK~l~g~~~-G~~~  238 (417)
T 3n0l_A          165 PKLIVCGASA--YARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPS---PFPYAHVVSSTTHKTLRGPRG-GIIM  238 (417)
T ss_dssp             CSEEEECCSS--CCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCC---CTTTCSEEEEESSTTTCSCSC-EEEE
T ss_pred             CeEEEECCcc--cCccCCHHHHHHHHHHcCCEEEEECccchhhhhcccCCC---ccccceEEEeeCccccCCCCe-eEEE
Confidence            4455555544  499999999999999999999999998766553221111   112489999999999988875 7777


Q ss_pred             eeCcccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcC-C
Q 048438           85 ATNPEYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFP-C  162 (239)
Q Consensus        85 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~-~  162 (239)
                      ..++..........      .... .++.. ....++..++.....+.++++.++..++++++.+.|.+ .|++++.+ .
T Consensus       239 ~~~~~~~~~~~~~~------~~~~-~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~  310 (417)
T 3n0l_A          239 TNDEELAKKINSAI------FPGI-QGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMD-RKFKLVSDGT  310 (417)
T ss_dssp             ESCHHHHHHHHHHH------TTTT-CSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH-TTCEEGGGSC
T ss_pred             ECCHHHHHHHhhhh------CCcc-cCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-CCceeccCCC
Confidence            75444332221100      0000 01111 11223344454444456778888888999999999998 58887753 3


Q ss_pred             CeeEEEEEEcC
Q 048438          163 HFAVVCFRVSP  173 (239)
Q Consensus       163 ~~~iv~f~~~~  173 (239)
                      ..+++.+.+.+
T Consensus       311 ~~~~~~~~~~~  321 (417)
T 3n0l_A          311 DNHLVLMSFLD  321 (417)
T ss_dssp             SSSEEEEECTT
T ss_pred             CceEEEEEccc
Confidence            45677777654

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=99.39  E-value=2.4e-11  Score=102.83  Aligned_cols=189  Identities=11%  Similarity=-0.004  Sum_probs=118.0

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCccccc-ccCCCCCcceEEEcCcccCCCc-cc
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRH-FIDGVEGADSFSLNAHKWFFAT-LD   79 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~-~~~~~~~~Ds~~~~~hK~l~~P-~g   79 (239)
                      +-+|+++..+|.+|.+.|   +++|+++|++||+++++|++|+.+... ..... ...+....+.++.+++|.++.| ..
T Consensus       145 ~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~-~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r  223 (361)
T 3ftb_A          145 VDSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGD-PSSSFVGEIKNYSCLFIIRAMTKFFAMPGIR  223 (361)
T ss_dssp             CSEEEEETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCC-TTSSSGGGTTTCSSEEEEEESSSTTSCGGGC
T ss_pred             CCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCC-cccchhHhcccCCCEEEEeeChhhcCCCCcc
Confidence            446778888999999876   666778888999999999999865542 11000 0111112447788999998633 45


Q ss_pred             ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHhCCCCeE-
Q 048438           80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYG-MENLRHFLRSHVNMARLFERLVSGDKRFE-  157 (239)
Q Consensus        80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~g~~~~~~~~~~la~~l~~~l~~~~g~~-  157 (239)
                      +|++++.+++.........      ..+      ....+....+...+. .+.++++.++..++.+++.+.|+++++++ 
T Consensus       224 ~g~~~~~~~~~~~~~~~~~------~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  291 (361)
T 3ftb_A          224 FGYGITNNKEIAAKIKAKQ------NPW------NINCFAEMAAINCLKDTNYIEESLLWIKKERKRFIEELNKIGFIKR  291 (361)
T ss_dssp             CEEEEESCHHHHHHHHTTS------CTT------CSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHSSSEEE
T ss_pred             eeEEEeCCHHHHHHHHhhC------CCC------CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCCce
Confidence            6777645554443332110      001      112233333333332 45667788888899999999999988998 


Q ss_pred             EEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEE--CCEeEEEEEec
Q 048438          158 VVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVL--GGIYAIRFATG  231 (239)
Q Consensus       158 ~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~--~g~~~lR~~~~  231 (239)
                      +. ++..+++.+.++...                        ...+.+.|.++|....+....  .+..++|+++.
T Consensus       292 ~~-~~~~~~~~~~~~~~~------------------------~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~  342 (361)
T 3ftb_A          292 VF-SPHANFVLCRLENIS------------------------GEKLYDSLLKEDIVIRRCCNFIGLDDSFVRFAIK  342 (361)
T ss_dssp             EE-CCSSSEEEEEESSSC------------------------HHHHHHHHHTTTEECEECTTSTTCCTTEEEEECC
T ss_pred             ec-CCCCeEEEEEcCCCC------------------------HHHHHHHHHHCCeEEeeCccCCCCCCCEEEEEcC
Confidence            55 566778888886521                        125667777776554433222  23578999976

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.39  E-value=1.4e-12  Score=112.04  Aligned_cols=188  Identities=9%  Similarity=0.025  Sum_probs=113.9

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCc--ccccccCCCCCcceEEEcCcccCCCccc
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFP--EFRHFIDGVEGADSFSLNAHKWFFATLD   79 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~--~~~~~~~~~~~~Ds~~~~~hK~l~~P~g   79 (239)
                      +-+|+++..+|.+|.+.|   +++|+++|+++|+++++|++|+.+....+  .... +.+....|+++.++||+++ +.|
T Consensus       175 ~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~-~~~~~~~~i~~~s~sK~~~-~~G  252 (389)
T 1o4s_A          175 TKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILD-VSEGFDRIVYINGFSKSHS-MTG  252 (389)
T ss_dssp             EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHH-HCSSSTTEEEEEESTTTTT-CGG
T ss_pred             ceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhh-cCCCCCcEEEEeechhhcC-Ccc
Confidence            456777888899999977   99999999999999999999987654211  1111 2222348999999999985 445


Q ss_pred             --ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438           80 --CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE  157 (239)
Q Consensus        80 --~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~  157 (239)
                        +|+++++ ++.+......          .....-....+..+.+...+.. ++++..++..++.+++.+.|++. |++
T Consensus       253 ~r~G~l~~~-~~~~~~l~~~----------~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~l~~~L~~~-g~~  319 (389)
T 1o4s_A          253 WRVGYLISS-EKVATAVSKI----------QSHTTSCINTVAQYAALKALEV-DNSYMVQTFKERKNFVVERLKKM-GVK  319 (389)
T ss_dssp             GCCEEEECC-HHHHHHHHHH----------HHHHTCSCCHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred             cceEEEEeC-HHHHHHHHHH----------hhhcccCCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHhc-CCe
Confidence              7888874 3333222100          0000001122333334444432 25666777788999999999887 887


Q ss_pred             EEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHH-hcCcEEEEEEEECCEeEEEEEecC
Q 048438          158 VVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESIN-ASGKAYMTNVVLGGIYAIRFATGA  232 (239)
Q Consensus       158 ~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~g~~~lR~~~~~  232 (239)
                      ++.+....++.+.++ ..                        ...+.+.|. ++|..+..........++|+++.+
T Consensus       320 ~~~~~~~~~~~~~~~-~~------------------------~~~l~~~l~~~~gi~v~~g~~f~~~~~~Ris~~~  370 (389)
T 1o4s_A          320 FVEPEGAFYLFFKVR-GD------------------------DVKFCERLLEEKKVALVPGSAFLKPGFVRLSFAT  370 (389)
T ss_dssp             CCCCSBSSEEEEECS-SC------------------------HHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCS
T ss_pred             eecCCcceEEEEeCC-CC------------------------HHHHHHHHHHHCCEEEeCchhcCCCCeEEEEEeC
Confidence            664433334555654 11                        125666665 556554433222212489999874

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=99.39  E-value=4.1e-12  Score=109.99  Aligned_cols=151  Identities=16%  Similarity=0.193  Sum_probs=104.9

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcc-c-ce
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATL-D-CC   81 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~-g-~g   81 (239)
                      .+.+|++...+|.+|.+.|+++|+++|++||++++||.+|+.+....+     .. + ++|+++.++||++++|. . .|
T Consensus       152 ~~~~v~~e~~~np~G~~~~l~~i~~la~~~g~~livDe~~~~~~~~~~-----~~-~-g~div~~S~sK~l~g~g~~~gG  224 (400)
T 3nmy_A          152 DTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFASPMLQRP-----LS-L-GADLVVHSATKYLNGHSDMVGG  224 (400)
T ss_dssp             TEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCCG-----GG-G-TCSEEEEETTTTTTCSSSCCCE
T ss_pred             CCCEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccccCCh-----hh-c-CCcEEEecCccccCCCCCccee
Confidence            356788888999999999999999999999999999999986544222     11 1 49999999999999873 2 34


Q ss_pred             -EEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc
Q 048438           82 -CLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF  160 (239)
Q Consensus        82 -~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~  160 (239)
                       ++++.++++......          +....+.....+..|.+++.  .+.+..++++..++++++.+.|++.|.++-+.
T Consensus       225 ~~vv~~~~~~~~~l~~----------~~~~~g~~~~~~~a~~~l~~--l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~V~  292 (400)
T 3nmy_A          225 IAVVGDNAELAEQMAF----------LQNSIGGVQGPFDSFLALRG--LKTLPLRMRAHCENALALAQWLETHPAIEKVI  292 (400)
T ss_dssp             EEEECSCHHHHHHHHH----------HHHHHCCBCCHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEE
T ss_pred             EEEEeCCHHHHHHHHH----------HHHhcCCCCCHHHHHHHHHh--HhHHHHHHHHHHHHHHHHHHHHHcCCCEeEEE
Confidence             444444433322210          00011222344556666554  34567788888999999999999988887553


Q ss_pred             CC-----------------CeeEEEEEEcC
Q 048438          161 PC-----------------HFAVVCFRVSP  173 (239)
Q Consensus       161 ~~-----------------~~~iv~f~~~~  173 (239)
                      .|                 ..++++|.+++
T Consensus       293 ~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~  322 (400)
T 3nmy_A          293 YPGLASHPQHVLAKRQMSGFGGIVSIVLKG  322 (400)
T ss_dssp             CTTSTTSTTHHHHHHHCSSCCSEEEEEETT
T ss_pred             CCCCCCCcCHHHHHHhCCCCCceEEEEeCC
Confidence            22                 13699999975

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=99.38  E-value=3.5e-13  Score=116.01  Aligned_cols=195  Identities=9%  Similarity=0.029  Sum_probs=116.1

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccc--cC-CCCCcceEEEcCcccCCCc-
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--ID-GVEGADSFSLNAHKWFFAT-   77 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~~-~~~~~Ds~~~~~hK~l~~P-   77 (239)
                      +.+|+++..+|.+|.+.|   +++|+++|++||+++++|.+|+.+..........  +. .....+.++.++||+++.| 
T Consensus       180 ~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G  259 (407)
T 3nra_A          180 ARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSG  259 (407)
T ss_dssp             CCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGG
T ss_pred             CcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCcccccCCCe
Confidence            456677888999999999   9999999999999999999998754321111110  11 1123668899999998733 


Q ss_pred             ccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 048438           78 LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNY--GMENLRHFLRSHVNMARLFERLVSGDKR  155 (239)
Q Consensus        78 ~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--g~~g~~~~~~~~~~la~~l~~~l~~~~g  155 (239)
                      ..+|+++. +++.+.......      ..+.  .  ....+....+...+  +.+.++++.++..++.+++.+.|+++++
T Consensus       260 ~r~G~~~~-~~~~~~~l~~~~------~~~~--~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~  328 (407)
T 3nra_A          260 YRLGVAFG-SRAIIARMEKLQ------AIVS--L--RAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEG  328 (407)
T ss_dssp             GCCEEEEE-CHHHHHHHHHHH------HHHT--S--SSCHHHHGGGGGTTCCCTTHHHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred             eeEEEEEc-CHHHHHHHHHHH------hhhc--c--CCChHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            45677765 333332211000      0000  0  00112222222222  2245677778888999999999999889


Q ss_pred             eEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhc-CcEEEEEEEE--CCEeEEEEEecC
Q 048438          156 FEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINAS-GKAYMTNVVL--GGIYAIRFATGA  232 (239)
Q Consensus       156 ~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~--~g~~~lR~~~~~  232 (239)
                      ++++.+...+.+.+.++....               +       ...+.+.|.++ |....+....  .+..++|+++..
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~---------------~-------~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~  386 (407)
T 3nra_A          329 VFARTPQAGSYLFPRLPKLAV---------------A-------PAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQ  386 (407)
T ss_dssp             CBCCCCSBSSEECCBCCCBSS---------------C-------HHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEECCS
T ss_pred             ceeccCCeeEEEEEeCCCCCC---------------C-------HHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEeCC
Confidence            887655544566555543211               0       12455666554 5544432222  246789999875

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=99.38  E-value=6.9e-12  Score=109.89  Aligned_cols=155  Identities=14%  Similarity=0.040  Sum_probs=97.1

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLW   84 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~   84 (239)
                      |-+|+++..++.++  .|+++|.++|++||+++|+|++|+.+.........   -++.+|+++.++||++++|.| |+++
T Consensus       186 ~~~i~~~~~~~~~~--~~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~---~~~~~di~~~s~sK~l~G~~g-G~i~  259 (447)
T 3h7f_A          186 PKVIIAGWSAYPRV--LDFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPS---PVPHADVVSTTVHKTLGGGRS-GLIV  259 (447)
T ss_dssp             CSEEEEECSSCCSC--CCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCC---STTTCSEEEEESSGGGCCCSC-EEEE
T ss_pred             CeEEEEcCCCCCCc--cCHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCC---CCCCCcEEEecCCcCCCCCCe-EEEE
Confidence            44555544444444  39999999999999999999998766443221111   113489999999999988987 7776


Q ss_pred             eeCcccccccccCCCCccCCCCceecCCCCC--ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC----CCeEE
Q 048438           85 ATNPEYLKNKATESKPVVDYKDWQITLSRSF--RSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD----KRFEV  158 (239)
Q Consensus        85 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~----~g~~~  158 (239)
                      .+ +++........      ..+.  .+...  ...++..++..+..+.++++.++..++++++.+.|++.    +|+++
T Consensus       260 ~~-~~~~~~l~~~~------~~~~--~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~  330 (447)
T 3h7f_A          260 GK-QQYAKAINSAV------FPGQ--QGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSV  330 (447)
T ss_dssp             EC-GGGHHHHHHHH------TTTT--CSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEE
T ss_pred             EC-HHHHHHHhhhc------CCcc--cCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEE
Confidence            64 33322211000      0000  11111  12333444554444567788888889999999999875    58888


Q ss_pred             EcC-CCeeEEEEEEcCC
Q 048438          159 VFP-CHFAVVCFRVSPL  174 (239)
Q Consensus       159 ~~~-~~~~iv~f~~~~~  174 (239)
                      +.+ ...+++.+.+.+.
T Consensus       331 ~~~~~~~~~~~~~~~~~  347 (447)
T 3h7f_A          331 VSGGTDVHLVLVDLRDS  347 (447)
T ss_dssp             GGGSCSSSEEEEECTTS
T ss_pred             ecCCCCCCEEEEEcCCC
Confidence            753 3566777776543

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=99.38  E-value=4.1e-12  Score=109.65  Aligned_cols=191  Identities=9%  Similarity=0.010  Sum_probs=113.9

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCC-CCc-ceEEEcCcccCCCccc
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGV-EGA-DSFSLNAHKWFFATLD   79 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~-~~~-Ds~~~~~hK~l~~P~g   79 (239)
                      +-+|+++..+|.+|.+.|   +++|+++|++||+++++|++|+.+.. ...... +..+ ... |+++.++||+++ +.|
T Consensus       175 ~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~-~~~~~~-~~~~~~~~~~i~~~s~sK~~~-~~G  251 (406)
T 1xi9_A          175 TKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTY-EGEHIS-PGSLTKDVPVIVMNGLSKVYF-ATG  251 (406)
T ss_dssp             EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBS-SSCCCC-HHHHCSSSCEEEEEESTTTTC-CGG
T ss_pred             ceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCcccccc-CCCCCC-HHHcCCCceEEEEeccccccC-CCc
Confidence            556777788899999876   99999999999999999999987654 111100 1111 235 889999999986 445


Q ss_pred             --ceEEEe-eCc----ccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHh
Q 048438           80 --CCCLWA-TNP----EYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVS  151 (239)
Q Consensus        80 --~g~l~~-~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~  151 (239)
                        +|++++ .++    +.+......       ....  .+.. +....+..+++. +.+.+++..++..++.+++.+.|+
T Consensus       252 ~r~G~~~~~~~~~~~~~l~~~l~~~-------~~~~--~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~  321 (406)
T 1xi9_A          252 WRLGYMYFVDPENKLSEVREAIDRL-------ARIR--LCPNTPAQFAAIAGLTG-PMDYLKEYMKKLKERRDYIYKRLN  321 (406)
T ss_dssp             GCCEEEEEECTTCTTHHHHHHHHHH-------HHHT--CCSCSHHHHHHHHHHHS-CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEEEEecCchhHHHHHHHHHHH-------HHhh--cCCCHHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHHHHHHH
Confidence              788873 233    333222110       0000  1111 111222233432 344567777888899999999999


Q ss_pred             CCCCeEEEcCCCeeEEE-EEEcCC-CcchhhhhhhhcccccccHHHHHHHHHHHHHHHH-hcCcEEEEEEEE--CCEeEE
Q 048438          152 GDKRFEVVFPCHFAVVC-FRVSPL-PVLMDKLKTKYENCLLSEEEQINEFNRELLESIN-ASGKAYMTNVVL--GGIYAI  226 (239)
Q Consensus       152 ~~~g~~~~~~~~~~iv~-f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~--~g~~~l  226 (239)
                      +++++++.. +..+++. +.++.. +.               +       ...+.+.|. +.|..+......  .+..++
T Consensus       322 ~~~~~~~~~-~~~~~~~~~~~~~~~~~---------------~-------~~~l~~~l~~~~gi~v~~g~~f~~~~~~~l  378 (406)
T 1xi9_A          322 EIPGISTTK-PQGAFYIFPKIEVGPWK---------------N-------DKEFVLDVLHNAHVLFVHGSGFGEYGAGHF  378 (406)
T ss_dssp             TSTTEECCC-CCBSSEECCEECSCSCS---------------S-------HHHHHHHHHHHHCEECEEGGGGCGGGTTBE
T ss_pred             hCCCCeeec-CCeeEEEEEecCccCCC---------------C-------HHHHHHHHHHhCCEEEeCchhcCCCCCCEE
Confidence            988988764 4444443 355431 10               0       125566665 556554433222  125689


Q ss_pred             EEEec
Q 048438          227 RFATG  231 (239)
Q Consensus       227 R~~~~  231 (239)
                      |+++.
T Consensus       379 Ris~~  383 (406)
T 1xi9_A          379 RAVFL  383 (406)
T ss_dssp             EEECC
T ss_pred             EEEec
Confidence            99986

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=99.37  E-value=4.4e-12  Score=110.36  Aligned_cols=200  Identities=11%  Similarity=-0.008  Sum_probs=120.0

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCC-Ccc-eEEEcCcccCCCc-c
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVE-GAD-SFSLNAHKWFFAT-L   78 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~-~~D-s~~~~~hK~l~~P-~   78 (239)
                      +.+|+++..+|.+|.+.|   +++|+++|+++|+++++|.+|+........... ...+. ..+ +++.++||.++.| .
T Consensus       192 ~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~-~~~~~~~~~vi~~~S~sK~~~~~G~  270 (427)
T 3dyd_A          192 TACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEP-LATLSTDVPILSCGGLAKRWLVPGW  270 (427)
T ss_dssp             EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCC-GGGGCSSCCEEEEEESTTTSSCGGG
T ss_pred             CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCcc-HHHhCCCCcEEEEeeccccCCCcCc
Confidence            556778888999999999   999999999999999999999875432211111 11111 122 4567999985544 3


Q ss_pred             cceEEEeeCc------ccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhC
Q 048438           79 DCCCLWATNP------EYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSG  152 (239)
Q Consensus        79 g~g~l~~~~~------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~  152 (239)
                      .+|++++.++      .........       .. .......+....+..+++....+.++++.++..++++++.+.|++
T Consensus       271 riG~~~~~~~~~~~~~~i~~~l~~~-------~~-~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~  342 (427)
T 3dyd_A          271 RLGWILIHDRRDIFGNEIRDGLVKL-------SQ-RILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAA  342 (427)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHH-------HH-HHCCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEecCcchhhHHHHHHHHHHH-------Hh-ccCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3788887643      111111000       00 000001112233334455445667788888889999999999999


Q ss_pred             CCCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHH-hcCcEEEEEEEECCEeEEEEEec
Q 048438          153 DKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESIN-ASGKAYMTNVVLGGIYAIRFATG  231 (239)
Q Consensus       153 ~~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~g~~~lR~~~~  231 (239)
                      +||++++.+...+.+.+.++.....          +. .+       ...+.++|. +.|.++.+........++|+++.
T Consensus       343 ~~g~~~~~p~~g~~~~~~l~~~~~~----------~~-~~-------~~~~~~~l~~~~gV~v~~g~~~~~~~~iRis~~  404 (427)
T 3dyd_A          343 IPGLRPVRPSGAMYLMVGIEMEHFP----------EF-EN-------DVEFTERLVAEQSVHCLPATCFEYPNFIRVVIT  404 (427)
T ss_dssp             STTEEEECCSBTTEEEEEECGGGCT----------TC-SS-------HHHHHHHHHHHHCEECEEGGGGTCTTEEEEESC
T ss_pred             CCCceecCCCeeEEEEEecCHhhcC----------CC-CC-------HHHHHHHHHHHCCEEEECCcccCCCCeEEEEEC
Confidence            8999987666666666677521100          00 00       124555664 45655554333444578999975

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=99.37  E-value=1.7e-12  Score=111.81  Aligned_cols=197  Identities=13%  Similarity=0.083  Sum_probs=114.0

Q ss_pred             ccEEE-EEecCCCCcccccChh---HHHHHHHHhCCEEEEecccccccccCcccccccCCC--CCcceEEEcCcccCCCc
Q 048438            4 IPLFL-CATIGTTAITAVDPLK---PLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGV--EGADSFSLNAHKWFFAT   77 (239)
Q Consensus         4 ~p~~v-v~t~gtt~~G~i~pl~---~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~--~~~Ds~~~~~hK~l~~P   77 (239)
                      .+-+| +....+|.+|.+.|++   +|+++|++||+++++|++|+.+......... +..+  ...+.++.+++|+++ |
T Consensus       174 ~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~-~~~~~~~~~~i~~~s~sK~~~-~  251 (407)
T 2zc0_A          174 KVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVP-LKALDNEGRVIVAGTLSKVLG-T  251 (407)
T ss_dssp             CEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCC-GGGGCSSCCEEEEEESTTTTC-T
T ss_pred             CceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCC-hhhcCCCCCEEEEcccccccC-C
Confidence            34454 4567789999999987   9999999999999999999876442211100 1111  124567889999988 5


Q ss_pred             -ccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhC-H-HHHHHHHHHHHHHHHHHHHHHhC-C
Q 048438           78 -LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYG-M-ENLRHFLRSHVNMARLFERLVSG-D  153 (239)
Q Consensus        78 -~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~-~g~~~~~~~~~~la~~l~~~l~~-~  153 (239)
                       ..+|+++++ ++.........      ..+.... .......+..+++... . +.+++..++..++.+++.+.|++ .
T Consensus       252 G~r~G~~~~~-~~~~~~~~~~~------~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  323 (407)
T 2zc0_A          252 GFRIGWIIAE-GEILKKVLMQK------QPIDFCA-PAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHL  323 (407)
T ss_dssp             TSCCEEEECC-HHHHHHHHHHH------TTTTSSS-CHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHC
T ss_pred             CcceEEEecC-HHHHHHHHHHH------HhhcCCC-CHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence             247888874 44333221100      0001000 0011112222333211 1 33455666677888899999976 5


Q ss_pred             CCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhc-CcEEEEEEEE----CCEeEEEE
Q 048438          154 KRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINAS-GKAYMTNVVL----GGIYAIRF  228 (239)
Q Consensus       154 ~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~----~g~~~lR~  228 (239)
                      ++++++.+...+++.+.++...                +       ...+.+.|.++ |..+......    .+..++|+
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~----------------~-------~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRi  380 (407)
T 2zc0_A          324 PNAEFTKPIAGMFVMFFLPEGA----------------D-------GISFANELMEREGVVVVPGKPFYTDESGKNAIRL  380 (407)
T ss_dssp             TTSCBCCCSBSSEEEEECSTTC----------------C-------HHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEE
T ss_pred             CCCEEecCCCcEEEEEEcCCCC----------------C-------HHHHHHHHHHhCCeEEECchhccCCCCCCCeEEE
Confidence            7777665555567778875311                0       12566677777 5544332211    13468999


Q ss_pred             EecCC
Q 048438          229 ATGAT  233 (239)
Q Consensus       229 ~~~~~  233 (239)
                      ++..+
T Consensus       381 s~~~~  385 (407)
T 2zc0_A          381 NFSRP  385 (407)
T ss_dssp             ECSSS
T ss_pred             EeCCC
Confidence            98876

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.37  E-value=1.8e-11  Score=104.95  Aligned_cols=190  Identities=14%  Similarity=0.045  Sum_probs=112.2

Q ss_pred             ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-c
Q 048438            4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-L   78 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~   78 (239)
                      .+.+|+++..++.+|.+.|    +++|.++|++||+++|+|.+|++.............++ ..|.++++  |++.+. .
T Consensus       182 ~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~-~~d~~~~S--K~l~gG~~  258 (392)
T 3ruy_A          182 NTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWDNV-TPDMYILG--KALGGGVF  258 (392)
T ss_dssp             TEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSSGGGGGTC-CCSEEEEC--GGGGTTTS
T ss_pred             CeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccchhhhccCC-CCCEEEEc--hhhhCChh
Confidence            3567888888999999999    99999999999999999999963211111111112233 37888775  987652 3


Q ss_pred             cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC--CCe
Q 048438           79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD--KRF  156 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~--~g~  156 (239)
                      ..|+++.+ ++.........    ....+   ............+++.+..   ++..++..++++++.+.|+++  +.+
T Consensus       259 ~~G~~~~~-~~~~~~~~~~~----~~~~~---~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~  327 (392)
T 3ruy_A          259 PISCAAAN-RDILGVFEPGS----HGSTF---GGNPLACAVSIAALEVLEE---EKLTERSLQLGEKLVGQLKEIDNPMI  327 (392)
T ss_dssp             CCEEEEEC-HHHHTTCCTTS----SCCSS---TTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHTTCCCTTE
T ss_pred             hhEEEEEC-HHHHhhhccCC----cCCCC---CCCHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            47777764 34433221100    00001   0011112222333443322   556677789999999999886  234


Q ss_pred             EEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCC
Q 048438          157 EVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTE  236 (239)
Q Consensus       157 ~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~  236 (239)
                      ... ++..+++.+.+++..                     .    .+.+.|.++|....+    .+..++|++++...|.
T Consensus       328 ~~~-~~~g~~~~~~~~~~~---------------------~----~l~~~l~~~gi~v~~----~~~~~iRi~~~~~~~~  377 (392)
T 3ruy_A          328 TEV-RGKGLFIGIELNEPA---------------------R----PYCEQLKAAGLLCKE----THENVIRIAPPLVISE  377 (392)
T ss_dssp             EEE-EEETTEEEEEESSCS---------------------H----HHHHHHHTTTEECCC----BTTTEEEECCCTTCCH
T ss_pred             eEE-EeeeeEEEEEEcchH---------------------H----HHHHHHHHCCcEEec----CCCCEEEEECCCCCCH
Confidence            433 334667778775411                     1    566677766654332    2357899997665554


Q ss_pred             c
Q 048438          237 E  237 (239)
Q Consensus       237 ~  237 (239)
                      +
T Consensus       378 ~  378 (392)
T 3ruy_A          378 E  378 (392)
T ss_dssp             H
T ss_pred             H
Confidence            4

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=99.37  E-value=1.8e-12  Score=110.87  Aligned_cols=197  Identities=14%  Similarity=0.086  Sum_probs=116.4

Q ss_pred             cEEEEEecCCCCcccc---cChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCC----CcceEEEcCcccCCCc
Q 048438            5 PLFLCATIGTTAITAV---DPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVE----GADSFSLNAHKWFFAT   77 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i---~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~----~~Ds~~~~~hK~l~~P   77 (239)
                      +.+|+++..+|.+|.+   +++++|+++|++||+++++|++|+.+......... +..+.    ...+++.++||+++.|
T Consensus       165 ~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~-~~~~~~~~~~~~i~~~s~sK~~g~~  243 (391)
T 4dq6_A          165 VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIP-MASISKEFEKNTITCMAPTKTFNIA  243 (391)
T ss_dssp             EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCC-GGGSCHHHHHTEEEEECSHHHHTCG
T ss_pred             CCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccC-HHHcCccccCcEEEEEechhhccCc
Confidence            5577788889999999   77899999999999999999999875432111110 11111    1337889999998633


Q ss_pred             -ccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhC-CCC
Q 048438           78 -LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSG-DKR  155 (239)
Q Consensus        78 -~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~-~~g  155 (239)
                       ..+|+++..++.........    .  ..+...............+++. ..+.++++.++..++.+++.+.|++ +|+
T Consensus       244 G~r~G~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  316 (391)
T 4dq6_A          244 GLQSSYVVLPDEKDYKLLDDA----F--TRIDIKRNNCFSLVATEASYNN-GESWLESFLEYLESNIDFAIKYINENMPK  316 (391)
T ss_dssp             GGCCEEEECCSHHHHHHHHHH----H--HHTTCCCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             ccceEEEEeCCHHHHHHHHHH----H--HhhcCCCCCHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence             45777776553333222100    0  0000000001111222333433 3445677788888999999999987 789


Q ss_pred             eEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhc-CcEEEEEEEE--CCEeEEEEEec
Q 048438          156 FEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINAS-GKAYMTNVVL--GGIYAIRFATG  231 (239)
Q Consensus       156 ~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~--~g~~~lR~~~~  231 (239)
                      ++++.+....++.+.++..+.               +       ...+.+.|.++ |....+....  .+..++|++++
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~~---------------~-------~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~  373 (391)
T 4dq6_A          317 LKVRKPEGTYLLWVDFSALGL---------------S-------DEELESILVQKGKVALNQGNSFGIGGSGYQRINLA  373 (391)
T ss_dssp             SEECCCSBSSEEEEECGGGCC---------------C-------HHHHHHHHHHTTCEECEEGGGGCTTCTTEEEEECC
T ss_pred             CEecCCCccEEEEEEhhhcCC---------------C-------HHHHHHHHHHhCCEEeeCchhhCCCCCCeEEEEEc
Confidence            988754333333466653111               0       12566777777 5544332222  23578999987

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=99.36  E-value=2.2e-12  Score=109.60  Aligned_cols=184  Identities=12%  Similarity=0.059  Sum_probs=114.2

Q ss_pred             cEEEEEecCCCCccccc---ChhHHHHHHHHh--CCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc
Q 048438            5 PLFLCATIGTTAITAVD---PLKPLCDVAKQF--GIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD   79 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~---pl~~i~~i~~~~--gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g   79 (239)
                      +-+|+++..+|.+|.+.   ++++|+++|++|  |+++++|++|+....  ......... ...+.++.++||++.....
T Consensus       158 ~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~--~~~~~~~~~-~~~~i~~~s~sK~~~~G~r  234 (367)
T 3euc_A          158 PAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQ--ESWMSRLTD-FGNLLVMRTVSKLGLAGIR  234 (367)
T ss_dssp             CSEEEEESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSS--CCSGGGGGT-CTTEEEEEECCCTTSCSCC
T ss_pred             CCEEEEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcc--cchHHHHhh-CCCEEEEecchhhcccccC
Confidence            45667778899999985   577888889999  999999999985321  111111222 2366888999999443345


Q ss_pred             ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 048438           80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYG-MENLRHFLRSHVNMARLFERLVSGDKRFEV  158 (239)
Q Consensus        80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~g~~~~~~~~~~la~~l~~~l~~~~g~~~  158 (239)
                      +|+++. +++.+.......      ..+.      ...+....+...+. .+.++++.++..++.+++.+.|+++||+++
T Consensus       235 ~G~~~~-~~~~~~~~~~~~------~~~~------~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~  301 (367)
T 3euc_A          235 LGYVAG-DPQWLEQLDKVR------PPYN------VNVLTEATALFALEHVAVLDEQAAQLRAERSRVAEGMAAHGGVTV  301 (367)
T ss_dssp             EEEEEE-CHHHHHHHGGGC------CSSC------CCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTSTTCEE
T ss_pred             ceeeee-CHHHHHHHHHhC------CCCC------CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCcEE
Confidence            677776 334333221100      0011      12233333322222 445678888889999999999999889985


Q ss_pred             EcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEE--CCEeEEEEEec
Q 048438          159 VFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVL--GGIYAIRFATG  231 (239)
Q Consensus       159 ~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~--~g~~~lR~~~~  231 (239)
                       .++..+.+.+.++  .                        ...+.+.|.++|..+......  .+..++|+++.
T Consensus       302 -~~~~~~~~~~~~~--~------------------------~~~l~~~l~~~gi~v~~~~~~~~~~~~~iRis~~  349 (367)
T 3euc_A          302 -FPSAANFLLARVP--D------------------------AAQTFDRLLARKVLIKNVSKMHPLLANCLRVTVS  349 (367)
T ss_dssp             -CCCSSSEEEEECS--C------------------------HHHHHHHHHTTTEECEECGGGCGGGTTEEEEECC
T ss_pred             -CCCCCeEEEEECC--C------------------------HHHHHHHHHHCCeEEEECCccCCCCCCEEEEecC
Confidence             4666677777765  1                        115666777676654432221  13468999976

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=99.36  E-value=2.2e-12  Score=111.96  Aligned_cols=200  Identities=13%  Similarity=0.075  Sum_probs=119.0

Q ss_pred             ccEEEEEecCCCCcccc---cChhHHHHHHHHhCCEEEEecccccccccCcccccc--c-CCCCCcceEEEcCcccCC-C
Q 048438            4 IPLFLCATIGTTAITAV---DPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--I-DGVEGADSFSLNAHKWFF-A   76 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i---~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~-~~~~~~Ds~~~~~hK~l~-~   76 (239)
                      .+.+|++....+.+|.+   +++++|+++|++||+++++|++|+............  + .+....+.++.+++|+++ .
T Consensus       194 ~~~~vil~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~  273 (421)
T 3l8a_A          194 NVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIA  273 (421)
T ss_dssp             TEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCG
T ss_pred             CCeEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhccCc
Confidence            35677778889999998   789999999999999999999998654322111110  1 111135588899999986 3


Q ss_pred             cccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCe
Q 048438           77 TLDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRF  156 (239)
Q Consensus        77 P~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~  156 (239)
                      ...+|++++++++.........      ..+....+..+.......+++. +.+.+++..++..++.+++.+.|++.+++
T Consensus       274 G~~~G~~~~~~~~l~~~~~~~~------~~~~~~~~n~~~~~a~~aal~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~i  346 (421)
T 3l8a_A          274 GTKNSFAIIQNESLRRKFQYRQ------LANNQHEVPTVGMIATQAAFQY-GKPWLEELKTVIEGNIKLVIKELEAKTKI  346 (421)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHH------HHTTCSCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred             hhheEeEEcCCHHHHHHHHHHH------HhcccCCCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            3456888876444332221000      0001101111222333334443 45567788888889999999999887899


Q ss_pred             EEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEE-EEE--CCEeEEEEEecC
Q 048438          157 EVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTN-VVL--GGIYAIRFATGA  232 (239)
Q Consensus       157 ~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~-~~~--~g~~~lR~~~~~  232 (239)
                      +++.+....++.+.++..+..                      ...+.+.|.++..+.+.+ ...  .+..++|+++..
T Consensus       347 ~~~~~~~~~~~~v~~~~~~~~----------------------~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~  403 (421)
T 3l8a_A          347 KVMEPEGTYLVWLDFSAYAIA----------------------QPQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVAT  403 (421)
T ss_dssp             EEECCSBSSEEEEECGGGTCC----------------------TTHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCS
T ss_pred             eEeCCCeeEEEEEeccccCCC----------------------HHHHHHHHHHhCCEEEECchhhCCCCCCEEEEEecC
Confidence            887554333333666531110                      115566676553444433 212  245789999773

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=99.34  E-value=8.8e-12  Score=107.10  Aligned_cols=199  Identities=10%  Similarity=0.003  Sum_probs=118.9

Q ss_pred             ccEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCC----CCcceEEEcCcccCCC
Q 048438            4 IPLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGV----EGADSFSLNAHKWFFA   76 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~----~~~Ds~~~~~hK~l~~   76 (239)
                      .+-+|+++..+|.+|.+.|   +++|+++|++||+++++|.+|+.+......... +..+    ...+.++.+++|+++.
T Consensus       164 ~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~-~~~~~~~~~~~~i~~~s~sK~~~~  242 (399)
T 1c7n_A          164 NNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTV-FQSIDEQLADKTITFTAPSKTFNI  242 (399)
T ss_dssp             TEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCC-GGGSCHHHHTTEEEEECSHHHHTC
T ss_pred             CCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCccc-HHHcCccccCcEEEEEeChhhccc
Confidence            3556777888999999999   999999999999999999999875432111101 1111    1256788999999864


Q ss_pred             c-ccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhC-CC
Q 048438           77 T-LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSG-DK  154 (239)
Q Consensus        77 P-~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~-~~  154 (239)
                      | ..+|++++++++.+.......      ..++...........+..+++. +.+.+++..++..++.+++.+.|++ +|
T Consensus       243 ~G~r~G~~~~~~~~~~~~l~~~~------~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~  315 (399)
T 1c7n_A          243 AGMGMSNIIIKNPDIRERFTKSR------DATSGMPFTTLGYKACEICYKE-CGKWLDGCIKVIDKNQRIVKDFFEVNHP  315 (399)
T ss_dssp             GGGCCEEEECCCHHHHHHHHHHH------HHTTCCCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             cchheEEEEECCHHHHHHHHHHH------hhcccCCCCHHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            4 236888876543433221100      0000000001111222223332 3456777778888999999999988 78


Q ss_pred             CeEEEcCCCeeEE-EEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHH-hcCcEEEEEEEEC--CEeEEEEEe
Q 048438          155 RFEVVFPCHFAVV-CFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESIN-ASGKAYMTNVVLG--GIYAIRFAT  230 (239)
Q Consensus       155 g~~~~~~~~~~iv-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~--g~~~lR~~~  230 (239)
                      +++++ ++..+++ .+.++..+.               +       ...+.+.|. +.|..+.+.....  +..++|+++
T Consensus       316 ~~~~~-~~~~~~~~~~~~~~~~~---------------~-------~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~  372 (399)
T 1c7n_A          316 EIKAP-LIEGTYLQWIDFRALKM---------------D-------HKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINL  372 (399)
T ss_dssp             TSBCC-CCSBSSEEEEECGGGCC---------------C-------HHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEEC
T ss_pred             CCeEe-cCCceEEEEEEcccCCC---------------C-------HHHHHHHHHHhCCEEEeCccccCCCCCCeEEEEe
Confidence            88765 3445544 466653110               0       125667776 5566554432221  346899998


Q ss_pred             cCC
Q 048438          231 GAT  233 (239)
Q Consensus       231 ~~~  233 (239)
                      ..+
T Consensus       373 ~~~  375 (399)
T 1c7n_A          373 AAP  375 (399)
T ss_dssp             CSC
T ss_pred             ccC
Confidence            764

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=99.34  E-value=7.2e-12  Score=108.58  Aligned_cols=153  Identities=12%  Similarity=0.119  Sum_probs=89.5

Q ss_pred             CCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEEeeCcccccc
Q 048438           14 TTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWATNPEYLKN   93 (239)
Q Consensus        14 tt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~l~~   93 (239)
                      ++.+|...|+++|.++|+++|+++|+|++|+.+... +. +. ...+..++++++++||+++. ...|+++.++++....
T Consensus       137 ~~~~G~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~-~~-~~-~~~~~~~~~~s~s~~K~~~~-g~~g~~~~~~~~l~~~  212 (418)
T 2c81_A          137 VHLFGSMANMDEINEIAQEHNLFVIEDCAQSHGSVW-NN-QR-AGTIGDIGAFSCQQGKVLTA-GEGGIIVTKNPRLFEL  212 (418)
T ss_dssp             BCCTTCCCCHHHHHHHHHHTTCEEEEECTTCTTCEE-TT-EE-TTSSSSEEEEECCTTSSSCS-SSCEEEEESCHHHHHH
T ss_pred             eCCcCCcccHHHHHHHHHHCCCEEEEECcccccCcc-CC-Ee-cccccceEEEeccCCcccCC-CCeEEEEECCHHHHHH
Confidence            457899999999999999999999999999987631 11 11 11122366777777999876 3556666544433221


Q ss_pred             cc---cCCCCccC-----CCCce--e----c--CCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438           94 KA---TESKPVVD-----YKDWQ--I----T--LSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE  157 (239)
Q Consensus        94 ~~---~~~~~~~~-----~~~~~--~----~--~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~  157 (239)
                      ..   ........     ...+.  .    .  ...+...+.....+.  ..+.++++.++..++++++.+.|+++++++
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~--~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~  290 (418)
T 2c81_A          213 IQQLRADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILLD--QLQELDDKNAIREKNAMFLNDALSKIDGIK  290 (418)
T ss_dssp             HHHHHBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHTTSTTEE
T ss_pred             HHHHHHhCccccccccccccchhhccccccccCcCCCcCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhccCCCcc
Confidence            11   00000000     00011  0    0  011122222222222  234566777888889999999999988999


Q ss_pred             EEcCCCe------eEEEEEEc
Q 048438          158 VVFPCHF------AVVCFRVS  172 (239)
Q Consensus       158 ~~~~~~~------~iv~f~~~  172 (239)
                      +..++..      .++++.++
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~  311 (418)
T 2c81_A          291 VMKRPPQVSRQTYYGYVFRFD  311 (418)
T ss_dssp             ECCCCTTEEECCCSEEEEEEC
T ss_pred             cCCCCCCCcccccEEEEEEEc
Confidence            8754432      36667775

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=99.34  E-value=1.2e-12  Score=112.07  Aligned_cols=197  Identities=11%  Similarity=0.012  Sum_probs=117.6

Q ss_pred             ccEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccc--cCCCCCcceEEEcCcccCCCcc
Q 048438            4 IPLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--IDGVEGADSFSLNAHKWFFATL   78 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~~~~~~~Ds~~~~~hK~l~~P~   78 (239)
                      .+-+|+++..+|.+|.+.|   +++|+++|++||+++++|++|+............  +.+....|+++.++||+++ +.
T Consensus       163 ~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~  241 (386)
T 1u08_A          163 RTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYH-MT  241 (386)
T ss_dssp             TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTT-CG
T ss_pred             cCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcC-Cc
Confidence            3566777788899999876   6899999999999999999998643321111000  1001148999999999976 44


Q ss_pred             c--ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCe
Q 048438           79 D--CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRF  156 (239)
Q Consensus        79 g--~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~  156 (239)
                      |  +|+++++ ++.+......    .....++   ........+..+++.. .+.+++..++..++.+++.+.|++. |+
T Consensus       242 G~r~G~~~~~-~~~~~~l~~~----~~~~~~~---~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-g~  311 (386)
T 1u08_A          242 GWKVGYCVAP-APISAEIRKV----HQYLTFS---VNTPAQLALADMLRAE-PEHYLALPDFYRQKRDILVNALNES-RL  311 (386)
T ss_dssp             GGCCEEEECC-HHHHHHHHHH----HHHHTSS---CCHHHHHHHHHHHHHC-THHHHTHHHHHHHHHHHHHHHTTSS-SC
T ss_pred             ccceEEEEcC-HHHHHHHHHH----HHhhccC---CChHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHHHHHC-CC
Confidence            5  7888874 3333222100    0000010   0001112233344432 4556777788889999999999987 88


Q ss_pred             EEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHH-hcCcEEEEEEEE----CCEeEEEEEec
Q 048438          157 EVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESIN-ASGKAYMTNVVL----GGIYAIRFATG  231 (239)
Q Consensus       157 ~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~----~g~~~lR~~~~  231 (239)
                      ++..+....++.+.++....              .+       ...+.+.|. +.|..+......    .+..++|+++.
T Consensus       312 ~~~~~~~g~~~~~~~~~~~~--------------~~-------~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~  370 (386)
T 1u08_A          312 EILPCEGTYFLLVDYSAVST--------------LD-------DVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFA  370 (386)
T ss_dssp             EECCCCBSSEEEEECTTTCC--------------SC-------HHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECC
T ss_pred             eecCCCceEEEEEecCCCCC--------------CC-------HHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEc
Confidence            87655445577787754200              00       125566665 346554433222    24578999987


Q ss_pred             C
Q 048438          232 A  232 (239)
Q Consensus       232 ~  232 (239)
                      +
T Consensus       371 ~  371 (386)
T 1u08_A          371 K  371 (386)
T ss_dssp             S
T ss_pred             C
Confidence            4

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=99.34  E-value=6.7e-12  Score=108.50  Aligned_cols=202  Identities=12%  Similarity=0.046  Sum_probs=119.8

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCc----ccccccCCCC--CcceEEEcCcccCC
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFP----EFRHFIDGVE--GADSFSLNAHKWFF   75 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~----~~~~~~~~~~--~~Ds~~~~~hK~l~   75 (239)
                      +.+|+++..+|.+|.+.|   +++|+++|++||+++++|++|+.......    .... +..+.  ..+.++.+++|+++
T Consensus       178 ~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~-~~~~~~~~~~i~~~s~sK~~~  256 (416)
T 1bw0_A          178 TKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTS-VADFETTVPRVILGGTAKNLV  256 (416)
T ss_dssp             EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCC-TTSSCCSCCEEEEEESTTTTS
T ss_pred             CeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccC-HHHccCCCcEEEEecchhhCC
Confidence            456677778899999999   99999999999999999999987432111    1111 12221  12466789999976


Q ss_pred             Cc-ccceEEEeeCc-ccccccccCCCCccCCCCce-ecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHh
Q 048438           76 AT-LDCCCLWATNP-EYLKNKATESKPVVDYKDWQ-ITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVS  151 (239)
Q Consensus        76 ~P-~g~g~l~~~~~-~~l~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~  151 (239)
                      .| ..+|++++.++ +.+......      ..... ...+.. .....+..+++....+.+++..++..++.+++.+.|+
T Consensus       257 ~~Glr~G~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~  330 (416)
T 1bw0_A          257 VPGWRLGWLLYVDPHGNGPSFLEG------LKRVGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIG  330 (416)
T ss_dssp             CGGGCCEEEEEECTTCSCHHHHHH------HHHHHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCceEEEEEeeCchhhHHHHHHH------HHHHhccccCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            65 23788887654 232211100      00000 001111 1122333345544466778888889999999999999


Q ss_pred             CCCCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHH-hcCcEEEEEEEECCEeEEEEEe
Q 048438          152 GDKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESIN-ASGKAYMTNVVLGGIYAIRFAT  230 (239)
Q Consensus       152 ~~~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~g~~~lR~~~  230 (239)
                      +++|++++.+...+.+.+.++.....          . ..+       ...+.++|. ++|..+..........++|+++
T Consensus       331 ~~~g~~~~~~~~~~~~~~~~~~~~~~----------~-~~~-------~~~~~~~l~~~~gi~v~~g~~f~~~~~iRis~  392 (416)
T 1bw0_A          331 ECIGLAPTMPRGAMYLMSRIDLEKYR----------D-IKT-------DVEFFEKLLEEENVQVLPGTIFHAPGFTRLTT  392 (416)
T ss_dssp             TSTTEEECCCCBTTEEEEEECGGGBS----------S-CCS-------HHHHHHHHHHHHCEECEEGGGGTCTTEEEEEC
T ss_pred             hCCCCcccCCCeeEEEEEeCCHHHcC----------C-CCC-------HHHHHHHHHHHCCEEEecccccCCCCeEEEEe
Confidence            88899877555566677777531000          0 000       124555664 5566554433332345899998


Q ss_pred             c
Q 048438          231 G  231 (239)
Q Consensus       231 ~  231 (239)
                      .
T Consensus       393 ~  393 (416)
T 1bw0_A          393 T  393 (416)
T ss_dssp             C
T ss_pred             c
Confidence            5

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=99.34  E-value=2.6e-11  Score=102.88  Aligned_cols=187  Identities=11%  Similarity=0.061  Sum_probs=117.1

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHh--CCEEEEecccccccccCcccccc--cCCCCCcceEEEcCcccCCCc-c
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQF--GIWVHVDAAYAGSACIFPEFRHF--IDGVEGADSFSLNAHKWFFAT-L   78 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~--gi~lhvD~A~~~~~~~~~~~~~~--~~~~~~~Ds~~~~~hK~l~~P-~   78 (239)
                      .+-+|+++..+|.+|.+.|+++|.++++.+  |+++++|++|+.+.. . .....  ......-++++.+++|+++.| .
T Consensus       155 ~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~-~-~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~  232 (363)
T 3ffh_A          155 KTTIVWICNPNNPTGNYIELADIQAFLDRVPSDVLVVLDEAYIEYVT-P-QPEKHEKLVRTYKNLIITRTFSKIYGLASA  232 (363)
T ss_dssp             TEEEEEEESSCTTTCCCCCHHHHHHHHTTSCTTSEEEEECTTGGGCS-S-CCCCCGGGGGTCTTEEEEEESSSTTCCSSC
T ss_pred             CCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCcEEEEeCchHhhcC-c-cccCHHHHhhcCCCEEEEeechhhhcCchh
Confidence            356777888899999999999999999888  999999999985443 1 11000  111122457788999997532 2


Q ss_pred             cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438           79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNY-GMENLRHFLRSHVNMARLFERLVSGDKRFE  157 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~g~~~~~~~~~~la~~l~~~l~~~~g~~  157 (239)
                      .+|++++ +++.........      ..+.      ...+..+.+...+ ..+.+++..++..++.+++.+.|++.+|++
T Consensus       233 r~G~~~~-~~~~~~~l~~~~------~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~  299 (363)
T 3ffh_A          233 RVGYGIA-DKEIIRQLNIVR------PPFN------TTSIGQKLAIEAIKDQAFIGECRTSNANGIKQYEAFAKRFEKVK  299 (363)
T ss_dssp             CCEEEEE-CHHHHHHHHHTC------CSCC------CBHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCTTCE
T ss_pred             ceeeeec-CHHHHHHHHHhC------CCCC------CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhCCCce
Confidence            3488887 444433222110      0011      1122222222222 235667788888899999999999877998


Q ss_pred             EEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEec
Q 048438          158 VVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATG  231 (239)
Q Consensus       158 ~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~  231 (239)
                      ++ ++..+.+.+.++..                         ...+.+.|.++|.............++|+++.
T Consensus       300 ~~-~~~~~~~~~~~~~~-------------------------~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~  347 (363)
T 3ffh_A          300 LY-PANGNFVLIDLGIE-------------------------AGTIFSYLEKNGYITRSGAALGFPTAVRITIG  347 (363)
T ss_dssp             EC-CCCSSEEEEECSSC-------------------------HHHHHHHHHHTTEECEETTTTTCTTEEEEECC
T ss_pred             EC-CCCCeEEEEECCCC-------------------------HHHHHHHHHHCCeEEEeCccCCCCCeEEEECC
Confidence            76 55667777777531                         12566677777655443222222468999976

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=99.33  E-value=9.7e-12  Score=106.48  Aligned_cols=193  Identities=11%  Similarity=0.027  Sum_probs=114.4

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccc--cCCCCCcceEEEcCcccCCCccc
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--IDGVEGADSFSLNAHKWFFATLD   79 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~~~~~~~Ds~~~~~hK~l~~P~g   79 (239)
                      +-+|+++..+|.+|.+.|   +++|+++|++||+++++|++|+.+..........  +.+....|+++.++||+++ +.|
T Consensus       161 ~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G  239 (389)
T 1gd9_A          161 TRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFA-MTG  239 (389)
T ss_dssp             EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTT-CGG
T ss_pred             ceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcC-Ccc
Confidence            556777888899999875   9999999999999999999998765421101111  1122247999999999975 334


Q ss_pred             --ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHh--CHH--HHHHHHHHHHHHHHHHHHHHhCC
Q 048438           80 --CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNY--GME--NLRHFLRSHVNMARLFERLVSGD  153 (239)
Q Consensus        80 --~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--g~~--g~~~~~~~~~~la~~l~~~l~~~  153 (239)
                        +|+++++ ++.+.......    ....++      ...+....+...+  +.+  .+++..++..++++++.+.|++.
T Consensus       240 ~r~G~~~~~-~~~~~~l~~~~----~~~~~~------~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  308 (389)
T 1gd9_A          240 WRLGFVAAP-SWIIERMVKFQ----MYNATC------PVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEM  308 (389)
T ss_dssp             GCCEEEECC-HHHHHHHHHHH----TTTTCS------CCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cceEEEEEC-HHHHHHHHHHH----hhhccC------CCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHc
Confidence              6888874 33332221100    000000      1122222222222  223  56777788889999999999987


Q ss_pred             CCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHH-hcCcEEEEEEEE--CCEeEEEEEe
Q 048438          154 KRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESIN-ASGKAYMTNVVL--GGIYAIRFAT  230 (239)
Q Consensus       154 ~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~--~g~~~lR~~~  230 (239)
                       |+++..+.....+.+.++..+.               +       ...+.+.|. +.|..+......  .+..++|+++
T Consensus       309 -g~~~~~~~~~~~~~~~~~~~~~---------------~-------~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~  365 (389)
T 1gd9_A          309 -GLPTVKPKGAFYIFPRIRDTGL---------------T-------SKKFSELMLKEARVAVVPGSAFGKAGEGYVRISY  365 (389)
T ss_dssp             -TCCCCCCCBTTEECCBCGGGTC---------------C-------HHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEEC
T ss_pred             -CCeecCCCeeeEEEEeccCCCC---------------C-------HHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEe
Confidence             8876643322345555542110               0       125666776 556554433222  1356899998


Q ss_pred             cC
Q 048438          231 GA  232 (239)
Q Consensus       231 ~~  232 (239)
                      ..
T Consensus       366 ~~  367 (389)
T 1gd9_A          366 AT  367 (389)
T ss_dssp             CS
T ss_pred             cC
Confidence            75

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=99.33  E-value=2.9e-12  Score=109.07  Aligned_cols=186  Identities=14%  Similarity=0.088  Sum_probs=112.7

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccc--cCCCCCcceEEEcCcccCCCccc--c
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--IDGVEGADSFSLNAHKWFFATLD--C   80 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~~~~~~~Ds~~~~~hK~l~~P~g--~   80 (239)
                      +-+|+++..+|.+|.+.|++ |.++|++||+++++|.+|+.+..... ....  +.+....|+++.++||+++ +.|  +
T Consensus       155 ~~~v~~~~p~nptG~~~~~~-l~~~~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~  231 (370)
T 2z61_A          155 TKAIIINSPSNPLGEVIDRE-IYEFAYENIPYIISDEIYNGLVYEGK-CYSAIEFDENLEKTILINGFSKLYA-MTGWRI  231 (370)
T ss_dssp             EEEEEEESSCTTTCCCCCHH-HHHHHHHHCSEEEEECTTTTCBSSSC-CCCGGGTCTTCSSEEEEEESTTTTT-CGGGCC
T ss_pred             ceEEEEcCCCCCcCcccCHH-HHHHHHHcCCEEEEEcchhhcccCCC-CcCHHHccCCCCcEEEEecChhccC-CccceE
Confidence            45677788889999999999 99999999999999999987654211 1111  1112348999999999975 445  7


Q ss_pred             eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHh---CHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438           81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNY---GMENLRHFLRSHVNMARLFERLVSGDKRFE  157 (239)
Q Consensus        81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---g~~g~~~~~~~~~~la~~l~~~l~~~~g~~  157 (239)
                      |+++.++ +........          ..........+..+.+...+   +.+.+++..++..++.+++.+.|++. |++
T Consensus       232 G~~~~~~-~~~~~~~~~----------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~  299 (370)
T 2z61_A          232 GYVISND-EIIEAILKL----------QQNLFISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDF-GWE  299 (370)
T ss_dssp             EEEECCH-HHHHHHHHH----------HHHHTSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCB
T ss_pred             EEEEECH-HHHHHHHHH----------HhhcccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHc-CCe
Confidence            8877643 333222100          00000011123333333333   34456777778889999999999887 877


Q ss_pred             EEcCCCee-EEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHH-hcCcEEEEEEEEC--CEeEEEEEec
Q 048438          158 VVFPCHFA-VVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESIN-ASGKAYMTNVVLG--GIYAIRFATG  231 (239)
Q Consensus       158 ~~~~~~~~-iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~--g~~~lR~~~~  231 (239)
                      +..+ +.+ .+.+.++. .                        ...+.+.|. ++|..........  +..++|+++.
T Consensus       300 ~~~~-~~~~~~~~~~~~-~------------------------~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~  351 (370)
T 2z61_A          300 VNNP-IGAYYVFPNIGE-D------------------------GREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYA  351 (370)
T ss_dssp             CCCC-CBTTEECCBCSS-C------------------------HHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECC
T ss_pred             ecCC-CcceEEEEecCC-C------------------------HHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEe
Confidence            6543 333 33344432 1                        125566665 4565544322221  3568999988

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=99.33  E-value=5.2e-12  Score=109.17  Aligned_cols=159  Identities=13%  Similarity=0.042  Sum_probs=100.2

Q ss_pred             ccEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccc--cCCCCCcceEEEcCcccCCCcc
Q 048438            4 IPLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--IDGVEGADSFSLNAHKWFFATL   78 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~~~~~~~Ds~~~~~hK~l~~P~   78 (239)
                      .+-+|+++..+|.+|.+.|   +++|+++|++||+++++|++|+.+..........  +......|+++.++||+++ +.
T Consensus       160 ~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~  238 (411)
T 2o0r_A          160 RTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFN-CT  238 (411)
T ss_dssp             TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTT-CT
T ss_pred             CceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcC-Cc
Confidence            3567777888899999877   5899999999999999999998764321110000  1111248999999999876 44


Q ss_pred             c--ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCe
Q 048438           79 D--CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRF  156 (239)
Q Consensus        79 g--~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~  156 (239)
                      |  +|+++++ ++.+......    .....++   ........+..+++. +.+.+++..++..++.+++.+.|++. |+
T Consensus       239 G~r~G~~~~~-~~~~~~l~~~----~~~~~~~---~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~  308 (411)
T 2o0r_A          239 GWKIGWACGP-AELIAGVRAA----KQYLSYV---GGAPFQPAVALALDT-EDAWVAALRNSLRARRDRLAAGLTEI-GF  308 (411)
T ss_dssp             TTCEEEEECC-HHHHHHHHHH----HHHHTSC---CCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHH-TC
T ss_pred             cceEEEEeeC-HHHHHHHHHH----HhhccCC---CChHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHHc-CC
Confidence            5  7888874 4433222100    0000011   111222333344543 35567778888889999999999886 88


Q ss_pred             EEEcCCCeeEEEEEEcC
Q 048438          157 EVVFPCHFAVVCFRVSP  173 (239)
Q Consensus       157 ~~~~~~~~~iv~f~~~~  173 (239)
                      ++..+....++.+.++.
T Consensus       309 ~~~~~~~g~~~~~~~~~  325 (411)
T 2o0r_A          309 AVHDSYGTYFLCADPRP  325 (411)
T ss_dssp             EECCCCBSSEEEEECGG
T ss_pred             EecCCCeeEEEEEecCC
Confidence            87644333367777754

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=99.32  E-value=9.5e-12  Score=108.37  Aligned_cols=204  Identities=11%  Similarity=-0.017  Sum_probs=115.9

Q ss_pred             CccEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCccccc---ccCCC--------CCcceEEE
Q 048438            3 LIPLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRH---FIDGV--------EGADSFSL   68 (239)
Q Consensus         3 ~~p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~---~~~~~--------~~~Ds~~~   68 (239)
                      ..+.+|+++..+|.+|.+.|   +++|+++|++||+++++|.+|+.+.........   .....        ....+++.
T Consensus       190 ~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~  269 (435)
T 3piu_A          190 LRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVY  269 (435)
T ss_dssp             CCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHHHC-------CGGGGEEEEE
T ss_pred             CCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcCHHHhccccccccccCCCCCEEEEE
Confidence            35677888888999999866   588888899999999999999875432211110   01110        01237889


Q ss_pred             cCcccCCCc-ccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhC--HHHHHHHHHHHHHHHHH
Q 048438           69 NAHKWFFAT-LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYG--MENLRHFLRSHVNMARL  145 (239)
Q Consensus        69 ~~hK~l~~P-~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g--~~g~~~~~~~~~~la~~  145 (239)
                      ++||+++.| ..+|+++..++.........       .  ............+...+....  .+.+++..++..++.++
T Consensus       270 s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~-------~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  340 (435)
T 3piu_A          270 SLSKDLGLPGFRVGAIYSNDDMVVAAATKM-------S--SFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKK  340 (435)
T ss_dssp             ESSSSSCCGGGCEEEEEESCHHHHHHHHHH-------G--GGSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeecccCCCceeEEEEEeCCHHHHHHHHHH-------h--hcCCCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH
Confidence            999998633 45788877544332211100       0  000000111111222232211  22445666777888899


Q ss_pred             HHHHHhCCCCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhc-CcEEEEEEEE--CC
Q 048438          146 FERLVSGDKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINAS-GKAYMTNVVL--GG  222 (239)
Q Consensus       146 l~~~l~~~~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~--~g  222 (239)
                      +.+.|++. |++++.+....++.+.++.....             ...    .....+.++|.++ |..+.+....  .+
T Consensus       341 l~~~L~~~-g~~~~~~~~g~~~~~~l~~~~~~-------------~~~----~~~~~~~~~l~~~~gi~v~~g~~~~~~~  402 (435)
T 3piu_A          341 LVSGLQKS-GISCLNGNAGLFCWVDMRHLLRS-------------NTF----EAEMELWKKIVYEVHLNISPGSSCHCTE  402 (435)
T ss_dssp             HHHHHHTT-TCEECCCCSSSEEEEECGGGSSS-------------SSH----HHHHHHHHHHHHTSCEECEEGGGGTCSS
T ss_pred             HHHHHHhc-CCcccCCCeeEEEEEEccccccc-------------CCc----hhHHHHHHHHHHHCCEEEeCCcccCCCC
Confidence            99999986 88877544446777777642100             000    1123566777666 5544332221  35


Q ss_pred             EeEEEEEecCC
Q 048438          223 IYAIRFATGAT  233 (239)
Q Consensus       223 ~~~lR~~~~~~  233 (239)
                      ..++|+++...
T Consensus       403 ~~~iRi~~~~~  413 (435)
T 3piu_A          403 PGWFRVCFANL  413 (435)
T ss_dssp             TTEEEEECSSS
T ss_pred             CCEEEEEeeCC
Confidence            67899997543

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=99.32  E-value=2.9e-11  Score=103.00  Aligned_cols=194  Identities=12%  Similarity=0.121  Sum_probs=114.7

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-ccc
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-LDC   80 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~   80 (239)
                      +-+|+++..+|.+|.+.|   +++|.++|++||+++++|++|+..... + ...... ....+.++.+++|+++.| ..+
T Consensus       155 ~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~~-~-~~~~~~-~~~~~i~~~s~sK~~~~~G~r~  231 (375)
T 3op7_A          155 TKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSEL-D-VPSIIE-VYDKGIAVNSLSKTYSLPGIRI  231 (375)
T ss_dssp             CCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSSS-C-CCCHHH-HCTTEEEEEESSSSSSCGGGCC
T ss_pred             CeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccc-C-CCchhh-hcCCEEEEeEChhhcCCcccce
Confidence            456777788899999999   999999999999999999999875432 1 010011 113568889999998644 345


Q ss_pred             eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc
Q 048438           81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF  160 (239)
Q Consensus        81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~  160 (239)
                      |+++. +++.........    ..  +.. ............+++. ..+.+++..++..++++++.+.|++.++++++.
T Consensus       232 G~v~~-~~~l~~~~~~~~----~~--~~~-~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  302 (375)
T 3op7_A          232 GWVAA-NHQVTDILRDYR----DY--TMI-CAGVFDDLVAQLALAH-YQEILERNRHILEENLAILDQWIEEEPLVSYIR  302 (375)
T ss_dssp             EEEEC-CHHHHHHHTTTG----GG--TTS-CCCHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECC
T ss_pred             EEEEe-CHHHHHHHHHHH----hh--hcc-CCCcHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHhhCCCceEec
Confidence            77776 444433221100    00  000 0001111222223332 123445566666788899999999888998775


Q ss_pred             CCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHH-HhcCcEEEEEEEECCEeEEEEEecCC
Q 048438          161 PCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESI-NASGKAYMTNVVLGGIYAIRFATGAT  233 (239)
Q Consensus       161 ~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~g~~~~~~~~~~g~~~lR~~~~~~  233 (239)
                      +.....+.+.++...                +       ...+.+++ .+.|..+.+........++|+++...
T Consensus       303 ~~~~~~~~~~~~~~~----------------~-------~~~~~~~ll~~~gi~v~~g~~~~~~~~iRi~~~~~  353 (375)
T 3op7_A          303 PAVVSTSFVKIAVDM----------------P-------MEDFCLQLLQEHGVLLVPGNRFERDGYVRLGFACE  353 (375)
T ss_dssp             CSSSSCEEEEECCSS----------------C-------HHHHHHHHHHHHCEECEEGGGGTCTTEEEECCCSC
T ss_pred             CCCeEEEeEEcCCCC----------------C-------HHHHHHHHHHhCCEEEeChhhhCCCCeEEEEecCC
Confidence            554445555554321                0       12455555 35566655443333357899997654

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=99.31  E-value=1e-11  Score=106.95  Aligned_cols=142  Identities=13%  Similarity=0.083  Sum_probs=85.4

Q ss_pred             CCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCc--ccCCCcccceEEEeeCcccc
Q 048438           14 TTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAH--KWFFATLDCCCLWATNPEYL   91 (239)
Q Consensus        14 tt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~h--K~l~~P~g~g~l~~~~~~~l   91 (239)
                      ++.+|.+.|+++|.++|+++|+++++|++|+.+... + ... ...  ..|++++++|  |+++.|...|+++..+++..
T Consensus       158 ~n~tG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~-~-~~~-~~~--~~di~~~S~~~sK~~~~~G~~g~~~~~~~~~~  232 (399)
T 2oga_A          158 VHLYGHPADMDALRELADRHGLHIVEDAAQAHGARY-R-GRR-IGA--GSSVAAFSFYPGKNLGCFGDGGAVVTGDPELA  232 (399)
T ss_dssp             BCGGGCCCCHHHHHHHHHHHTCEECEECTTCTTCEE-T-TEE-TTC--TTCEEEEECCTTSSSCCSSCCEEEEESCHHHH
T ss_pred             eCCcCCccCHHHHHHHHHHcCCEEEEECcccccCcc-C-Cee-ccc--ccCEEEEeCCCCccCCcCCceEEEEeCCHHHH
Confidence            578999999999999999999999999999876442 2 111 111  2699999985  99875434555555444432


Q ss_pred             ccccc--CCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcCC
Q 048438           92 KNKAT--ESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPC  162 (239)
Q Consensus        92 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~~  162 (239)
                      .....  ..+....+.........+...+..+.++..+  +.+++..++..++++++.+.|++++++++...+
T Consensus       233 ~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l--~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~  303 (399)
T 2oga_A          233 ERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRL--AHLDSWNGRRSALAAEYLSGLAGLPGIGLPVTA  303 (399)
T ss_dssp             HHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHH--HTHHHHHHHHHHHHHHHHHHTTTCTTCBCCCCC
T ss_pred             HHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhccCCCccccCCC
Confidence            21110  0000001100000111133444444443322  334556677778999999999998888765433

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}

Probab=99.31  E-value=3.2e-11  Score=102.34  Aligned_cols=185  Identities=11%  Similarity=0.077  Sum_probs=115.0

Q ss_pred             EEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-ccceEEE
Q 048438            6 LFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-LDCCCLW   84 (239)
Q Consensus         6 ~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~g~l~   84 (239)
                      -+|+++..+|.+|.+.|+++|.++|+++|+++++|++|+...-  ......... ...+.++.++||+++.| ..+|+++
T Consensus       151 ~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~--~~~~~~~~~-~~~~i~~~s~sK~~g~~G~r~G~~~  227 (360)
T 3hdo_A          151 KVFFLTTPNAPLGPSFPLEYIDELARRCAGMLVLDETYAEFAE--SNALELVRR-HENVVVTRTLSKSYSLAGMRIGLAI  227 (360)
T ss_dssp             SEEEEESSCTTTCCCCCHHHHHHHHHHBSSEEEEECTTGGGSS--CCCTHHHHH-CSSEEEEEESTTTTSCTTSCCEEEE
T ss_pred             CEEEEeCCCCCCCCCcCHHHHHHHHHHCCCEEEEECChHhhCC--cchhHHhcc-CCCEEEEecchHhhcCCccceeeEe
Confidence            3677788899999999999999999999999999999985311  111011111 12567888999998633 4567777


Q ss_pred             eeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcCCCe
Q 048438           85 ATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHF  164 (239)
Q Consensus        85 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~~~~  164 (239)
                      . +++.........      ..+.   ........+..+++.  .+.++++.++..++.+++.+.|++. ++++. ++..
T Consensus       228 ~-~~~~~~~~~~~~------~~~~---~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~-~~~~  293 (360)
T 3hdo_A          228 A-RPEVIAALDKIR------DHYN---LDRLAQAACVAALRD--QAYLSECCRRIRETREWFTTELRSI-GYDVI-PSQG  293 (360)
T ss_dssp             C-CHHHHHHHHHHS------CSCC---SCHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHT-TCEEC-CCSS
T ss_pred             e-CHHHHHHHHHhC------CCCC---CCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHC-CCEEc-CCCc
Confidence            6 343332221100      0011   001111222233442  3456788888889999999999987 88875 5666


Q ss_pred             eEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEec
Q 048438          165 AVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATG  231 (239)
Q Consensus       165 ~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~  231 (239)
                      +.+.+.+++..                        ...+.+.|.++|..........+..++|+++.
T Consensus       294 ~~~~~~~~~~~------------------------~~~l~~~l~~~gi~v~~~~~~~~~~~iRis~~  336 (360)
T 3hdo_A          294 NYLFATPPDRD------------------------GKRVYDGLYARKVLVRHFSDPLLAHGMRISIG  336 (360)
T ss_dssp             SEEEEECTTCC------------------------HHHHHHHHHHTTEECBCCCSTTTTTSEEEECC
T ss_pred             cEEEEECCCCC------------------------HHHHHHHHHHCCEEEEECCCCCCCCEEEEEcC
Confidence            77777765321                        12556667777755433222223578999976

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*

Probab=99.30  E-value=1.6e-11  Score=107.03  Aligned_cols=152  Identities=16%  Similarity=0.127  Sum_probs=98.8

Q ss_pred             ccEEEEEec----CCCCcccccChhHHHHHHHH--hCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCC-
Q 048438            4 IPLFLCATI----GTTAITAVDPLKPLCDVAKQ--FGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFA-   76 (239)
Q Consensus         4 ~p~~vv~t~----gtt~~G~i~pl~~i~~i~~~--~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~-   76 (239)
                      .+-+|++..    .++.+|.+.|+++|+++||+  +|++++||.+|+.+......    .. . ++|+++.++||++++ 
T Consensus       176 ~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~~livD~a~~~~~~~~~p----~~-~-gaDiv~~S~sK~lgg~  249 (427)
T 3i16_A          176 SITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNCYGEFMDTKEP----TD-V-GADLIAGSLIKNIGGG  249 (427)
T ss_dssp             TEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTSEEEEECTTTTTSSSSCG----GG-G-TCSEEEEETTSGGGTT
T ss_pred             CCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCCEEEEECCCccccccCCc----cc-c-CCeEEEecCcccCCCC
Confidence            456777766    78999999999999999999  99999999999876532211    11 1 499999999999887 


Q ss_pred             --cccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 048438           77 --TLDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK  154 (239)
Q Consensus        77 --P~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~  154 (239)
                        |. .|+++. +++++......    ..........+-.+.+  .|.+++  |......++++..+.+.++.+.|++. 
T Consensus       250 g~~~-gG~i~~-~~~li~~l~~~----~~~~~~g~~~~~~~~~--a~~~l~--gl~~~~~r~~~~~~~a~~la~~L~~~-  318 (427)
T 3i16_A          250 IAPT-GGYLAG-TKDCIEKTSYR----LTVPGIGGECGSTFGV--VRSMYQ--GLFLAPHISMEALKGAILCSRIMELA-  318 (427)
T ss_dssp             TCCS-CEEEEE-CHHHHHHHHHH----HSCTTTGGGCCCCTTC--HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             CCce-EEEEEE-CHHHHHHHHHh----cccCccCccCCccHHH--HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhC-
Confidence              43 366665 44444332210    0000011111111221  233333  23455678888999999999999987 


Q ss_pred             CeEEEcCCCee-----EEEEEEcC
Q 048438          155 RFEVVFPCHFA-----VVCFRVSP  173 (239)
Q Consensus       155 g~~~~~~~~~~-----iv~f~~~~  173 (239)
                      |+++. |...+     |++|.+.+
T Consensus       319 g~~V~-p~~~~~~~~~i~~i~l~~  341 (427)
T 3i16_A          319 GFEVM-PKYDEKRSDIIQSIKFND  341 (427)
T ss_dssp             TCEEE-SCTTSCCSSSCEEEECSS
T ss_pred             CCeec-CCCCCCCccEEEEEEECC
Confidence            67874 43444     88898863

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=99.30  E-value=1.2e-10  Score=98.79  Aligned_cols=186  Identities=11%  Similarity=0.038  Sum_probs=112.5

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHH--hCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-ccce
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQ--FGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-LDCC   81 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~--~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~g   81 (239)
                      +-+|+++..+|.+|.+.|.++|.++++.  +|+++++|.+|+.+.- ........... ..+.+..+++|+++.| ..+|
T Consensus       147 ~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~-~~~~~~~~~~~-~~~i~~~s~sK~~g~~G~r~G  224 (356)
T 1fg7_A          147 VKVVYVCSPNNPTGQLINPQDFRTLLELTRGKAIVVADEAYIEFCP-QASLAGWLAEY-PHLAILRTLSKAFALAGLRCG  224 (356)
T ss_dssp             EEEEEEESSCTTTCCCCCHHHHHHHHHHHTTTCEEEEECTTGGGSG-GGCSGGGTTTC-TTEEEEEESSSTTCCGGGCCE
T ss_pred             CCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCCEEEEEccchhhcC-CCcHHHHHhhC-CCEEEEecchHhhcCchhhhE
Confidence            4567778888999999886665555443  8999999999986541 11111111221 3678899999997533 2368


Q ss_pred             EEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHH---HHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 048438           82 CLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMEN---LRHFLRSHVNMARLFERLVSGDKRFEV  158 (239)
Q Consensus        82 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g---~~~~~~~~~~la~~l~~~l~~~~g~~~  158 (239)
                      ++++ +++.+.......      ..|      ....+....+...+...+   +++..++..++.+++.+.|++++++..
T Consensus       225 ~~~~-~~~~~~~l~~~~------~~~------~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~  291 (356)
T 1fg7_A          225 FTLA-NEEVINLLMKVI------APY------PLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQ  291 (356)
T ss_dssp             EEEE-CHHHHHHHHHHS------CSS------CSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEE
T ss_pred             EEEe-CHHHHHHHHHhc------CCC------CCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhCCCceE
Confidence            8887 444433221100      011      122344444555555444   677777888899999999998866544


Q ss_pred             EcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEE-EEEECCEeEEEEEec
Q 048438          159 VFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMT-NVVLGGIYAIRFATG  231 (239)
Q Consensus       159 ~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~-~~~~~g~~~lR~~~~  231 (239)
                      +.++..+.+.+++++                          ...+.++|.++|..... ........++|+++.
T Consensus       292 ~~~~~~~~~~~~~~~--------------------------~~~l~~~L~~~gI~v~~~g~~~~~~~~iRis~~  339 (356)
T 1fg7_A          292 VFDSETNYILARFKA--------------------------SSAVFKSLWDQGIILRDQNKQPSLSGCLRITVG  339 (356)
T ss_dssp             ECCCSSSEEEEEETT--------------------------HHHHHHHHHHTTEECEECTTSTTCTTEEEEECC
T ss_pred             ECCCCCeEEEEECCC--------------------------HHHHHHHHHHCCEEEEECCCCCCCCCeEEEEeC
Confidence            456667778777751                          01566677666655443 211111248999986

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=99.30  E-value=2.3e-11  Score=104.70  Aligned_cols=158  Identities=13%  Similarity=0.095  Sum_probs=95.5

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLW   84 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~   84 (239)
                      +-+|+++.   .+|...|+++|.++|+++|+++++|+||+.+.......   ...+..+|+++++.||+++ |.++|+++
T Consensus       123 ~~~v~~~~---~~G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~---~~~~~~~~~~s~s~~K~l~-~~~~G~~~  195 (394)
T 1o69_A          123 PKALILTH---LYGNAAKMDEIVEICKENDIVLIEDAAEALGSFYKNKA---LGTFGEFGVYSYNGNKIIT-TSGGGMLI  195 (394)
T ss_dssp             CCEEEEEC---GGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEE---TTSSSSEEEEECCTTSSSC-CSSCEEEE
T ss_pred             ceEEEEEC---CCCChhhHHHHHHHHHHcCCEEEEECcCcccceeCCcc---cccccCcEEEEEeCCccCC-CCCceEEE
Confidence            44555553   78999999999999999999999999998654432210   1112248999999999865 67899998


Q ss_pred             eeCcccccccccC-CCCccCCCCce-ecCCCCCCh--HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc
Q 048438           85 ATNPEYLKNKATE-SKPVVDYKDWQ-ITLSRSFRS--LKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF  160 (239)
Q Consensus        85 ~~~~~~l~~~~~~-~~~~~~~~~~~-~~~~~~~~~--~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~  160 (239)
                      +++++.+...... .........++ .+.+.+++.  +....++..  .+.+++++++..++++++.+.|++.  +++..
T Consensus       196 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~--l~~l~~~~~~~~~~~~~l~~~L~~~--~~~~~  271 (394)
T 1o69_A          196 GKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQ--MEVLEQRVLKKREIYEWYKEFLGEY--FSFLD  271 (394)
T ss_dssp             ESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHHHHTTT--EECCC
T ss_pred             ECCHHHHHHHHHHHHhccccCccccccccCcccCcCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhccc--ccccC
Confidence            8654433221100 00000000011 112222222  222222222  2345677888889999999999886  66654


Q ss_pred             CCC---ee--EEEEEEcC
Q 048438          161 PCH---FA--VVCFRVSP  173 (239)
Q Consensus       161 ~~~---~~--iv~f~~~~  173 (239)
                      ++.   .+  +++|.+++
T Consensus       272 ~~~~~~~~~~~~~i~~~~  289 (394)
T 1o69_A          272 ELENSRSNRWLSTALINF  289 (394)
T ss_dssp             CCTTEECCCSSEEEEESC
T ss_pred             CCCCCcceeEEEEEEecc
Confidence            321   23  67888763

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*

Probab=99.30  E-value=2.9e-11  Score=104.86  Aligned_cols=150  Identities=15%  Similarity=0.046  Sum_probs=96.8

Q ss_pred             cEEEEEec----CCCCcccccChhHHHHHHHH--hCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcc
Q 048438            5 PLFLCATI----GTTAITAVDPLKPLCDVAKQ--FGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATL   78 (239)
Q Consensus         5 p~~vv~t~----gtt~~G~i~pl~~i~~i~~~--~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~   78 (239)
                      +-+|++..    .++.+|.+.|+++|+++||+  +|+++|||.+|+.+......    . .. ++|+++.++||+++++.
T Consensus       160 tklV~i~~s~g~p~nptg~v~~l~~I~~la~~~~~~~~livD~a~~~~~~~~~p----~-~~-g~Div~~S~sK~lgg~~  233 (409)
T 3jzl_A          160 TKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGEFVEYQEP----P-EV-GADIIAGSLIKNPGGGL  233 (409)
T ss_dssp             EEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTTSSCCS----G-GG-TCSEEEEETTSGGGTTT
T ss_pred             CeEEEEECCCCCCCCCcCccccHHHHHHHHHhhCCCCEEEEeCCcccccccCCc----c-cc-CCeEEEECccccCCccC
Confidence            56677777    78999999999999999999  99999999999876532211    1 11 49999999999988753


Q ss_pred             --cceEEEeeCccccccccc--CCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 048438           79 --DCCCLWATNPEYLKNKAT--ESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK  154 (239)
Q Consensus        79 --g~g~l~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~  154 (239)
                        ..|+++. +++++.....  ....      .....+.....  .+.+++  +......++++..+.++++.+.|++. 
T Consensus       234 ~~~GG~v~~-~~~li~~l~~~~~~~~------~g~~~g~~~~~--~~~~l~--gl~~~~~r~~~~~~~a~~la~~L~~~-  301 (409)
T 3jzl_A          234 AKTGGYIAG-KEALVDLCGYRLTTPG------IGREAGASLYS--LLEMYQ--GFFLAPHVTAQAIKGARFTAAMLAEF-  301 (409)
T ss_dssp             CSSCEEEEE-CHHHHHHHHHHHSCTT------TGGGCCCCTTC--HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             CceEEEEEe-CHHHHHHHHHHhcccc------ccccccccHHH--HHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHhC-
Confidence              1355554 4544433221  0000      00111111111  122333  23445678888899999999999997 


Q ss_pred             CeEEEcCCCee-----EEEEEEcC
Q 048438          155 RFEVVFPCHFA-----VVCFRVSP  173 (239)
Q Consensus       155 g~~~~~~~~~~-----iv~f~~~~  173 (239)
                      |+++. |....     |++|.+.+
T Consensus       302 g~~v~-p~~~~~~~~~i~~i~l~~  324 (409)
T 3jzl_A          302 GVEAD-PVWDAPRTDLIQSVSFHN  324 (409)
T ss_dssp             TCEEE-SCTTSCCSSSCCEEECSC
T ss_pred             CCccc-CCCCCCCccEEEEEEeCC
Confidence            77874 43333     88888853

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3

Probab=99.30  E-value=1.2e-11  Score=108.93  Aligned_cols=79  Identities=18%  Similarity=0.234  Sum_probs=64.9

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc--eE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC--CC   82 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~--g~   82 (239)
                      +-+|+++..+|.+|.+.|+++|+++|++||+++++|++|+.+....+     .. + ++|+++.++||++++|.|+  |+
T Consensus       218 tk~v~l~~p~NptG~v~~l~~i~~la~~~gi~livDea~~~g~~~~~-----~~-~-~~div~~S~sK~~~g~~Gl~~G~  290 (464)
T 1ibj_A          218 TKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRP-----LE-L-GADIVMHSATKFIAGHSDVMAGV  290 (464)
T ss_dssp             EEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTTCCG-----GG-T-TCSEEEEETTTTTTCSSCCCCEE
T ss_pred             ceEEEEeCCCCCCCEeecHHHHHHHHHHcCCEEEEECCCcccccCCh-----hh-c-CCEEEEECCcccccCCCCCcEEE
Confidence            56788889999999999999999999999999999999987644212     11 2 3999999999999998876  88


Q ss_pred             EEeeCccc
Q 048438           83 LWATNPEY   90 (239)
Q Consensus        83 l~~~~~~~   90 (239)
                      ++++++..
T Consensus       291 l~~~~~~l  298 (464)
T 1ibj_A          291 LAVKGEKL  298 (464)
T ss_dssp             EEECSHHH
T ss_pred             EEEChHHH
Confidence            88765433

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}

Probab=99.30  E-value=2.5e-11  Score=105.54  Aligned_cols=150  Identities=13%  Similarity=0.162  Sum_probs=103.5

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ceE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCC   82 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~   82 (239)
                      +-+|++...+|.+|.+.|+++|+++|+++|+++++|.+|+.+....+     .. . ++|+++.+++|+++++..  .|+
T Consensus       167 t~~v~le~p~NptG~~~~l~~i~~la~~~g~~livDe~~~~~~~~~~-----~~-~-g~div~~S~sK~l~~~G~~~~G~  239 (414)
T 3ndn_A          167 TQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLLQQG-----FP-L-GVDVVVYSGTKHIDGQGRVLGGA  239 (414)
T ss_dssp             CSEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCCC-----GG-G-TCSEEEEETTTTTTCSSCCCCEE
T ss_pred             CeEEEEECCCCCCCccccHHHHHHHHHHcCCEEEEECCCcccccCCc-----hh-c-CCCeEeccCCccccCCCCceEEE
Confidence            45677788999999999999999999999999999999986654322     11 1 389999999999876542  677


Q ss_pred             EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcCC
Q 048438           83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPC  162 (239)
Q Consensus        83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~~  162 (239)
                      ++.+ ++.+......         .....+........|.+++.  .+.+..++++..+.++++.+.|++.|++..+..|
T Consensus       240 vv~~-~~~~~~~l~~---------~~~~~g~~~~~~~a~~~~~~--l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p  307 (414)
T 3ndn_A          240 ILGD-REYIDGPVQK---------LMRHTGPAMSAFNAWVLLKG--LETLAIRVQHSNASAQRIAEFLNGHPSVRWVRYP  307 (414)
T ss_dssp             EEEC-HHHHTTHHHH---------HHHHHCCCCCHHHHHHHHHH--GGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECT
T ss_pred             EEEC-HHHHHHHHHH---------HHHHcCCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhcCCCEeEEECC
Confidence            7664 3333211100         00011222344555655553  3456778888889999999999998888654322


Q ss_pred             -----------------CeeEEEEEEcC
Q 048438          163 -----------------HFAVVCFRVSP  173 (239)
Q Consensus       163 -----------------~~~iv~f~~~~  173 (239)
                                       ..++++|.+++
T Consensus       308 ~l~~~p~~~~~~~~~~g~G~~l~~~l~~  335 (414)
T 3ndn_A          308 YLPSHPQYDLAKRQMSGGGTVVTFALDC  335 (414)
T ss_dssp             TSTTSTTHHHHHHHCSSCCSEEEEEECS
T ss_pred             CCCCCcCHHHHHHhCCCCceEEEEEEcC
Confidence                             24689999975

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.30  E-value=2.4e-11  Score=104.17  Aligned_cols=199  Identities=11%  Similarity=0.014  Sum_probs=115.9

Q ss_pred             ccEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCC-C-cceEEEcCcccCCCc-
Q 048438            4 IPLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVE-G-ADSFSLNAHKWFFAT-   77 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~-~-~Ds~~~~~hK~l~~P-   77 (239)
                      .|-+|+++..+|.+|.+.|   +++|+++|++||+++++|.+|+.+......... +..+. . .|. +.++||+++.| 
T Consensus       162 ~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~-~~~~~~~~~d~-~~s~sK~~~~~G  239 (390)
T 1d2f_A          162 ECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIP-WSNVARGDWAL-LTSGSKSFNIPA  239 (390)
T ss_dssp             TEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCC-GGGTCCSSEEE-EECSHHHHTCGG
T ss_pred             CCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcC-HHHcchhhHhh-ccCccHhhcccC
Confidence            4566777788899999988   889999999999999999999875432111111 11221 1 266 99999998633 


Q ss_pred             ccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhC-CCCe
Q 048438           78 LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSG-DKRF  156 (239)
Q Consensus        78 ~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~-~~g~  156 (239)
                      ..+|++++.+++.........    . ....+.............+++. +.+.+++..++..++.+++.+.|++ +|++
T Consensus       240 ~r~G~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~  313 (390)
T 1d2f_A          240 LTGAYGIIENSSSRDAYLSAL----K-GRDGLSSPSVLALTAHIAAYQQ-GAPWLDALRIYLKDNLTYIADKMNAAFPEL  313 (390)
T ss_dssp             GCCEEEEECSHHHHHHHHHHH----H-TTSCCCSCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred             hhheEEEECCHHHHHHHHHHH----h-hhcccCCCCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence            236888875544332221100    0 0000000001111222233432 3455677777888999999999988 7888


Q ss_pred             EEEcCCCeeEE-EEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHH-hcCcEEEEEEEE--CCEeEEEEEecC
Q 048438          157 EVVFPCHFAVV-CFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESIN-ASGKAYMTNVVL--GGIYAIRFATGA  232 (239)
Q Consensus       157 ~~~~~~~~~iv-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~--~g~~~lR~~~~~  232 (239)
                      +++ ++..+++ .+.++..+.               +       ...+.+.|. +.|..+.+....  .+..++|+++..
T Consensus       314 ~~~-~~~~~~~~~~~~~~~~~---------------~-------~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris~~~  370 (390)
T 1d2f_A          314 NWQ-IPQSTYLAWLDLRPLNI---------------D-------DNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGC  370 (390)
T ss_dssp             CCC-CCSBCSEEEEECGGGCC---------------C-------HHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCS
T ss_pred             EEe-cCCccEEEEEEccccCC---------------C-------HHHHHHHHHHHcCEEeeCccccCCCCCCeEEEEecC
Confidence            765 4445544 466653110               0       125667777 456554433222  134689999886


Q ss_pred             C
Q 048438          233 T  233 (239)
Q Consensus       233 ~  233 (239)
                      +
T Consensus       371 ~  371 (390)
T 1d2f_A          371 P  371 (390)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=99.29  E-value=9.9e-12  Score=106.48  Aligned_cols=149  Identities=17%  Similarity=0.185  Sum_probs=89.4

Q ss_pred             CCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCc--ccCCCcccceEEEeeCcccc
Q 048438           14 TTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAH--KWFFATLDCCCLWATNPEYL   91 (239)
Q Consensus        14 tt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~h--K~l~~P~g~g~l~~~~~~~l   91 (239)
                      ++.+|.+.|+++|.++|+++|+++++|++|+.+.....  +. + +.  .|++++++|  |+++++ ..|+++..+++..
T Consensus       134 ~~~~G~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~--~~-~-~~--~d~~~~S~~k~K~l~~~-~~g~~~~~~~~~~  206 (393)
T 1mdo_A          134 VHYAGAPADLDAIYALGERYGIPVIEDAAHATGTSYKG--RH-I-GA--RGTAIFSFHAIKNITCA-EGGIVVTDNPQFA  206 (393)
T ss_dssp             BCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETT--EE-T-TS--SSEEEEECCTTSSSCSS-SCEEEEESCHHHH
T ss_pred             eCCCCCcCCHHHHHHHHHHcCCeEEEECccccCCeECC--ee-c-CC--CCeEEEeCCCCCccccc-cceEEEeCCHHHH
Confidence            35799999999999999999999999999987644321  11 1 11  799999999  998765 3566665444332


Q ss_pred             ccccc--CCCCccC-------CCCceec---CCC--CCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438           92 KNKAT--ESKPVVD-------YKDWQIT---LSR--SFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE  157 (239)
Q Consensus        92 ~~~~~--~~~~~~~-------~~~~~~~---~~~--~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~  157 (239)
                      .....  ..+...+       ...+.+.   .+.  +...+....++..  .+.+++..++..++++++.+.|++++ ++
T Consensus       207 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~--l~~~~~~~~~~~~~~~~l~~~L~~~~-~~  283 (393)
T 1mdo_A          207 DKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQ--LQKLDALNARRAAIAAQYHQAMADLP-FQ  283 (393)
T ss_dssp             HHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHH--HHTHHHHHHHHHHHHHHHHHHHHTSS-CE
T ss_pred             HHHHHHHhcCCcccchhhhcccccccccccccCccCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhcCC-cc
Confidence            21110  0000000       0011111   111  2233333332222  34566777888899999999999875 88


Q ss_pred             EEcCC------CeeEEEEEEc
Q 048438          158 VVFPC------HFAVVCFRVS  172 (239)
Q Consensus       158 ~~~~~------~~~iv~f~~~  172 (239)
                      +...+      ...++.++++
T Consensus       284 ~~~~~~~~~~~~~~~~~v~~~  304 (393)
T 1mdo_A          284 PLSLPSWEHIHAWHLFIIRVD  304 (393)
T ss_dssp             ECCCCSSCEECCCSCEEEECC
T ss_pred             cccCCCCCCCceeEEEEEEec
Confidence            76432      2236777775

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=99.29  E-value=6.7e-12  Score=107.93  Aligned_cols=189  Identities=15%  Similarity=0.094  Sum_probs=113.5

Q ss_pred             EEecCCCCcccccChh---HHHHHHHHhCCEEEEecccccccccCcccccccCCCC-----CcceEEEcCcccCCCc-cc
Q 048438            9 CATIGTTAITAVDPLK---PLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVE-----GADSFSLNAHKWFFAT-LD   79 (239)
Q Consensus         9 v~t~gtt~~G~i~pl~---~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~-----~~Ds~~~~~hK~l~~P-~g   79 (239)
                      +.+..+|.+|.+.|.+   +|+++|++||+++++|.+|+.+......... +..+.     ...+++.++||+++ | ..
T Consensus       168 ~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~-~~~~~~~~~~~~~i~~~s~sK~~~-~G~r  245 (397)
T 2zyj_A          168 LIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPS-LFELAREAGYPGVIYLGSFSKVLS-PGLR  245 (397)
T ss_dssp             ECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCC-HHHHHHHHTCCCEEEEEESTTTTC-GGGC
T ss_pred             ECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCc-hhhhCcccCCCeEEEEeccccccc-ccce
Confidence            4567789999988855   8999999999999999999875432111000 11111     13378899999988 5 45


Q ss_pred             ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHh--CH-HHHHHHHHHHHHHHHHHHHHHhC-CC-
Q 048438           80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNY--GM-ENLRHFLRSHVNMARLFERLVSG-DK-  154 (239)
Q Consensus        80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--g~-~g~~~~~~~~~~la~~l~~~l~~-~~-  154 (239)
                      +|+++++ ++.+.......      ..+.  .+.  ..+....+...+  +. +.+++..++..++.+++.+.|++ .| 
T Consensus       246 ~G~~~~~-~~~~~~l~~~~------~~~~--~~~--~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  314 (397)
T 2zyj_A          246 VAFAVAH-PEALQKLVQAK------QGAD--LHT--PMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDREVPK  314 (397)
T ss_dssp             CEEEECC-HHHHHHHHHHH------HHHH--SSC--CHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred             eEEEecC-HHHHHHHHHHH------Hhhc--CCC--CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            7888874 33332221000      0000  111  122222222222  21 34666677777888899999986 56 


Q ss_pred             CeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEE----CCEeEEEEEe
Q 048438          155 RFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVL----GGIYAIRFAT  230 (239)
Q Consensus       155 g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~----~g~~~lR~~~  230 (239)
                      |+++..+...+.+.+.++...                +       ...+.+.|.++|..+......    .+..++|+++
T Consensus       315 g~~~~~~~~g~~~~~~~~~~~----------------~-------~~~~~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~  371 (397)
T 2zyj_A          315 EVRYTRPKGGMFVWMELPKGL----------------S-------AEGLFRRALEENVAFVPGGPFFANGGGENTLRLSY  371 (397)
T ss_dssp             TSEECCCSBSSEEEEECSTTC----------------C-------HHHHHHHHHHTTEEEEESGGGCTTSCCTTEEEEEC
T ss_pred             CeEEccCCccEEEEEEcCCCC----------------C-------HHHHHHHHHHCCCEEechHHhcCCCCCCCeEEEEc
Confidence            688776656677778875311                0       125667777776555443222    1356899998


Q ss_pred             cCC
Q 048438          231 GAT  233 (239)
Q Consensus       231 ~~~  233 (239)
                      ..+
T Consensus       372 ~~~  374 (397)
T 2zyj_A          372 ATL  374 (397)
T ss_dssp             SSS
T ss_pred             CCC
Confidence            875

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.29  E-value=1.5e-11  Score=106.89  Aligned_cols=194  Identities=11%  Similarity=0.092  Sum_probs=115.1

Q ss_pred             ccEEE-EEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccc--cCCCCCcceEEEcCcccCCCc
Q 048438            4 IPLFL-CATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--IDGVEGADSFSLNAHKWFFAT   77 (239)
Q Consensus         4 ~p~~v-v~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~~~~~~~Ds~~~~~hK~l~~P   77 (239)
                      .+-+| +.+..+|.+|.+.|   +++|+++|++||+++++|.+|+.+..........  +.. ...++++.+++|+++ |
T Consensus       187 ~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~-~~~~i~~~s~sK~~~-~  264 (425)
T 1vp4_A          187 QVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGG-PERVVLLNTFSKVLA-P  264 (425)
T ss_dssp             GEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHC-TTTEEEEEESTTTTC-G
T ss_pred             CceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCC-CCCEEEEeccccccc-c
Confidence            45565 56778899999877   5788999999999999999998754321110000  111 136788999999987 4


Q ss_pred             -ccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHH---HHHHhC-HHHHHHHHHHHHHHHHHHHHHHhC
Q 048438           78 -LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWF---VIRNYG-MENLRHFLRSHVNMARLFERLVSG  152 (239)
Q Consensus        78 -~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~g-~~g~~~~~~~~~~la~~l~~~l~~  152 (239)
                       ..+|+++++ ++.+......    .  ..+.  .+.  ..+..+.   +++... .+.+++..++..++.+++.+.|++
T Consensus       265 G~r~G~~~~~-~~~~~~l~~~----~--~~~~--~~~--~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  333 (425)
T 1vp4_A          265 GLRIGMVAGS-KEFIRKIVQA----K--QSAD--LCS--PAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEE  333 (425)
T ss_dssp             GGCEEEEECC-HHHHHHHHHH----H--HHHH--SSC--CHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccceEEEeeC-HHHHHHHHHH----h--hhhc--CCC--CHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             236888874 4433222100    0  0000  011  1222333   333321 234566666777888899999876


Q ss_pred             C-C---CeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEE----CCEe
Q 048438          153 D-K---RFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVL----GGIY  224 (239)
Q Consensus       153 ~-~---g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~----~g~~  224 (239)
                      . +   |++++.+...+++.+.++....                       ...+.+.|.++|..+......    .+..
T Consensus       334 ~~~~~~g~~~~~~~~g~~~~~~~~~~~~-----------------------~~~l~~~l~~~gi~v~~g~~f~~~~~~~~  390 (425)
T 1vp4_A          334 YFSDIPGVKWVKSEGGLFIWLTLPEGFD-----------------------TWEMFEYAKRKKVFYVPGRVFKVYDEPSP  390 (425)
T ss_dssp             HSTTSTTCEECCCSBSSEEEEECCTTCC-----------------------TTTTHHHHHHHTEECEEGGGGCTTCCCCS
T ss_pred             hCCCCCceEEecCCccEEEEEEcCCCCC-----------------------HHHHHHHHHHCCCEEECchhhcCCCCCCC
Confidence            3 5   6887756556688888763110                       014566676676554433222    2457


Q ss_pred             EEEEEecCC
Q 048438          225 AIRFATGAT  233 (239)
Q Consensus       225 ~lR~~~~~~  233 (239)
                      ++|+++..+
T Consensus       391 ~iRis~~~~  399 (425)
T 1vp4_A          391 SMRLSFCLP  399 (425)
T ss_dssp             EEEEECSSS
T ss_pred             eEEEEeCCC
Confidence            899998764

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=99.28  E-value=4.2e-11  Score=101.99  Aligned_cols=183  Identities=14%  Similarity=0.026  Sum_probs=115.0

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-ccceEE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-LDCCCL   83 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~g~l   83 (239)
                      |-+|+++..+|.+|.+.|++++.++|+.+++++++|++|+.+....+ ........+..++++.++||+++.| ..+|++
T Consensus       165 ~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~  243 (369)
T 3cq5_A          165 PDIVFVTTPNNPTGDVTSLDDVERIINVAPGIVIVDEAYAEFSPSPS-ATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYF  243 (369)
T ss_dssp             CSEEEEESSCTTTCCCCCHHHHHHHHHHCSSEEEEECTTGGGCCSCC-GGGGTTTCTTTEEEEEESSSTTSCGGGCCEEE
T ss_pred             CCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEECCchhhcCCcc-hHHHHhhCCCCEEEEEechHhcCCcccceEEE
Confidence            44666788899999999999999999999999999999987653211 1111122111568899999998644 236888


Q ss_pred             EeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcCC
Q 048438           84 WATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNY-GMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPC  162 (239)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~~  162 (239)
                      ++++ +.+.......      ..++      ...+..+.+...+ ..+.+++..++..++.+++.+.|++ .|+++. ++
T Consensus       244 ~~~~-~~~~~l~~~~------~~~~------~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~-~~  308 (369)
T 3cq5_A          244 VANP-AFIDAVMLVR------LPYH------LSALSQAAAIVALRHSADTLGTVEKLSVERVRVAARLEE-LGYAVV-PS  308 (369)
T ss_dssp             EECT-HHHHHHHTTS------CTTC------SCHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHH-HTCEEE-CC
T ss_pred             EeCH-HHHHHHHHcC------CCCC------CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHh-CCCEEC-CC
Confidence            8753 3333221100      0011      1223333322222 1345667777888999999999988 488876 55


Q ss_pred             CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEec
Q 048438          163 HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATG  231 (239)
Q Consensus       163 ~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~  231 (239)
                      ..+++.+.++. .                        ...+.+.|.++|......   ....++|+++.
T Consensus       309 ~~~~~~~~~~~-~------------------------~~~l~~~l~~~gi~v~~~---~~~~~iRis~~  349 (369)
T 3cq5_A          309 ESNFVFFGDFS-D------------------------QHAAWQAFLDRGVLIRDV---GIAGHLRTTIG  349 (369)
T ss_dssp             SSSEEEEECCS-S------------------------HHHHHHHHHHTTEECBCC---SCTTEEEEECC
T ss_pred             CCeEEEEECCC-C------------------------HHHHHHHHHHCCEEEEEC---CCCCeEEEEeC
Confidence            66788887651 1                        114566666666554332   22468999986

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=99.28  E-value=4.2e-12  Score=110.28  Aligned_cols=160  Identities=9%  Similarity=-0.015  Sum_probs=99.9

Q ss_pred             ccEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccc--cCCCCCcceEEEcCcccCCCcc
Q 048438            4 IPLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--IDGVEGADSFSLNAHKWFFATL   78 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~~~~~~~Ds~~~~~hK~l~~P~   78 (239)
                      .+.+|+++..+|.+|.+.|   +++|+++|++||+++++|++|+............  +.+....|+++.++||+++ +.
T Consensus       182 ~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~-~~  260 (429)
T 1yiz_A          182 KTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFS-LT  260 (429)
T ss_dssp             TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHT-CG
T ss_pred             CceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhccC-CC
Confidence            3566777888899999986   9999999999999999999998643311111111  1112248999999999875 44


Q ss_pred             c--ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHh----C--HHHHHHHHHHHHHHHHHHHHHH
Q 048438           79 D--CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNY----G--MENLRHFLRSHVNMARLFERLV  150 (239)
Q Consensus        79 g--~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----g--~~g~~~~~~~~~~la~~l~~~l  150 (239)
                      |  +|+++++ ++.+......    .....++   ........+..+++..    +  .+.+++..++..++.+++.+.|
T Consensus       261 G~r~G~~~~~-~~~~~~l~~~----~~~~~~~---~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L  332 (429)
T 1yiz_A          261 GWKIGWAYGP-EALLKNLQMV----HQNCVYT---CATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFL  332 (429)
T ss_dssp             GGCCEEEESC-HHHHHHHHHH----HHTTTCC---CCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcceEEEEeC-HHHHHHHHHH----HhhcccC---CChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            6  7888874 3333322110    0000011   0011112233344431    3  3456677777888999999999


Q ss_pred             hCCCCeEEEcCCCeeEEEEEEcC
Q 048438          151 SGDKRFEVVFPCHFAVVCFRVSP  173 (239)
Q Consensus       151 ~~~~g~~~~~~~~~~iv~f~~~~  173 (239)
                      ++. |+++..+....++.+.++.
T Consensus       333 ~~~-g~~~~~~~~g~~~~~~~~~  354 (429)
T 1yiz_A          333 AEV-GMNPTVPQGGYFMVADWSS  354 (429)
T ss_dssp             HHH-TCEEEECSBSSEEEEECCS
T ss_pred             HhC-CCcccCCCcceEEEEEccc
Confidence            886 8887755445578888764

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=99.27  E-value=4.1e-11  Score=101.17  Aligned_cols=187  Identities=10%  Similarity=-0.011  Sum_probs=116.3

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHH--hCCEEEEecccccccccCc--ccccccCCCCCcceEEEcCcccCC-Ccc
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQ--FGIWVHVDAAYAGSACIFP--EFRHFIDGVEGADSFSLNAHKWFF-ATL   78 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~--~gi~lhvD~A~~~~~~~~~--~~~~~~~~~~~~Ds~~~~~hK~l~-~P~   78 (239)
                      .+-+|+++..+|.+|.+.|++++.++++.  +|+++++|++|+.......  ............++++.++||+++ ...
T Consensus       141 ~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~  220 (354)
T 3ly1_A          141 GPSIVYLVNPNNPTGTITPADVIEPWIASKPANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGM  220 (354)
T ss_dssp             SCEEEEEESSCTTTCCCCCHHHHHHHHHTCCTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGGG
T ss_pred             CCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhccChhh
Confidence            46677788889999999999999999888  9999999999986543211  000111111136688999999986 344


Q ss_pred             cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438           79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYG-MENLRHFLRSHVNMARLFERLVSGDKRFE  157 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~g~~~~~~~~~~la~~l~~~l~~~~g~~  157 (239)
                      .+|+++. +++.........      ..+      ....+....+...+. .+.++++.++..++.+++.+.|++. +++
T Consensus       221 r~G~~~~-~~~~~~~~~~~~------~~~------~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~  286 (354)
T 3ly1_A          221 RVGYAVA-HPTVIALMGRYV------AGE------KINFSGVDAALASMNDSAFITYSKKSNDVSRQILLKALEDL-KLP  286 (354)
T ss_dssp             CCEEEEC-CHHHHHHHGGGT------TCS------CCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH-TCC
T ss_pred             hheeeec-CHHHHHHHHHhc------CCC------CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCe
Confidence            5787776 334333222100      001      111233333333332 2556777888889999999999886 777


Q ss_pred             EEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEec
Q 048438          158 VVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATG  231 (239)
Q Consensus       158 ~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~  231 (239)
                      ++ ++..+++.+.++..                         ...+.+.|.++|.. +......+..++|+++.
T Consensus       287 ~~-~~~~~~~~~~~~~~-------------------------~~~~~~~l~~~gi~-v~g~~~~~~~~iRis~~  333 (354)
T 3ly1_A          287 YL-PSEGNFVFHQLVVP-------------------------LKDYQTHMADAGVL-IGRAFPPADNWCRISLG  333 (354)
T ss_dssp             BC-CCCSSEEEEECSSC-------------------------HHHHHHHHHHTTEE-CCCCCTTCTTEEEEECC
T ss_pred             EC-CCCceEEEEECCCC-------------------------HHHHHHHHHHCCEE-EeecCCCCCCEEEEEcC
Confidence            65 55667777777541                         12556667666654 33211124578999976

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=99.27  E-value=3.1e-11  Score=102.70  Aligned_cols=196  Identities=13%  Similarity=-0.001  Sum_probs=113.1

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccC-cccccccCCC--CCcceEEEcCcccCCCc-
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIF-PEFRHFIDGV--EGADSFSLNAHKWFFAT-   77 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~-~~~~~~~~~~--~~~Ds~~~~~hK~l~~P-   77 (239)
                      +.+|+++..+|.+|.+.|   +++|+++|++||+++++|.+|+...... ..... +..+  ...+.++.+++|+++.| 
T Consensus       151 ~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~-~~~~~~~~~~i~~~s~sK~~g~~G  229 (377)
T 3fdb_A          151 ARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAA-GVSDTAASVCITITAPSKAWNIAG  229 (377)
T ss_dssp             CCEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGG-GSCHHHHHHEEEEECSTTTTTCGG
T ss_pred             CCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCccc-HHHccCCCcEEEEEeChHhccCcc
Confidence            446777788999999876   6667777999999999999998754322 11111 1111  12457889999998533 


Q ss_pred             ccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhC-CCCe
Q 048438           78 LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSG-DKRF  156 (239)
Q Consensus        78 ~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~-~~g~  156 (239)
                      ..+|++++.++.........       ..+...............+++. +.+.++++.++..++.+++.+.|++ +|++
T Consensus       230 ~r~G~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~  301 (377)
T 3fdb_A          230 LKCAQIIFSNPSDAEHWQQL-------SPVIKDGASTLGLIAAEAAYRY-GTDFLNQEVAYLKNNHDFLLHEIPKRIPGA  301 (377)
T ss_dssp             GCCEEEECCSHHHHHHHHHS-------CHHHHCCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred             hhheEEEeCCHHHHHHHHHH-------HHhhcCCCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHhhCCCc
Confidence            34676666554433322110       0000000011111222233332 3455678888888999999999988 7899


Q ss_pred             EEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhc-CcEEEEEEEEC--CEeEEEEEecC
Q 048438          157 EVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINAS-GKAYMTNVVLG--GIYAIRFATGA  232 (239)
Q Consensus       157 ~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~--g~~~lR~~~~~  232 (239)
                      +++.+....++.+.++..+.               +        ..+.+.|.++ |..+.+.....  +..++|+++..
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~---------------~--------~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~~  357 (377)
T 3fdb_A          302 KITPMQATYLMWIDFRDTTI---------------E--------GSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFAT  357 (377)
T ss_dssp             EECCCSBCSEEEEECTTSCC---------------C--------SCHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS
T ss_pred             eEecCCeeEEEEEECcccCC---------------C--------HHHHHHHHHhCCEEecCChhccCCCCCEEEEEeCC
Confidence            98754433344566654221               0        1344555555 55443322221  35789999874

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=99.26  E-value=8.1e-11  Score=99.86  Aligned_cols=186  Identities=13%  Similarity=0.100  Sum_probs=116.9

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHH--HhCCEEEEecccccccc--c----CcccccccCCCCCcceEEEcCcccCC
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAK--QFGIWVHVDAAYAGSAC--I----FPEFRHFIDGVEGADSFSLNAHKWFF   75 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~--~~gi~lhvD~A~~~~~~--~----~~~~~~~~~~~~~~Ds~~~~~hK~l~   75 (239)
                      .+-+|+++..+|.+|.+.|++++.++++  ++|+++++|++|+.+..  .    .+... .... ...++++.++||+++
T Consensus       153 ~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~-~~~~-~~~~i~~~s~sK~~~  230 (365)
T 3get_A          153 EIKLIFLCLPNNPLGECLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCE-LIKE-FDNVLYLGTFSKLYG  230 (365)
T ss_dssp             TEEEEEEESSCTTTCCCCCHHHHHHHHHTSCTTSEEEEECTTHHHHHHHCGGGCCCHHH-HHHH-CTTEEEEEESSSTTS
T ss_pred             CCCEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCccHHHhcccCCcccccHhH-Hhcc-CCCEEEEeecchHhc
Confidence            3567777888999999999999999988  67999999999985442  1    11000 0111 136788999999986


Q ss_pred             Cc-ccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHHhCC
Q 048438           76 AT-LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNY-GMENLRHFLRSHVNMARLFERLVSGD  153 (239)
Q Consensus        76 ~P-~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~g~~~~~~~~~~la~~l~~~l~~~  153 (239)
                      .| ..+|+++. +++.........      ..+.      ...+..+.+...+ ..+.+++..++..++.+++.+.|++.
T Consensus       231 ~~G~r~G~~~~-~~~~~~~~~~~~------~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~  297 (365)
T 3get_A          231 LGGLRIGYGIA-NANIISAFYKLR------APFN------VSNLALKAAVAAMDDDEFTEKTLENNFSQMELYKEFAKKH  297 (365)
T ss_dssp             CTTTCCEEEEE-CHHHHHHHHHHS------CTTC------SCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CcchheEEEEc-CHHHHHHHHHhc------CCCC------cCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            33 45788777 444433221100      0011      1122222222222 23567788888889999999999987


Q ss_pred             CCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEec
Q 048438          154 KRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATG  231 (239)
Q Consensus       154 ~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~  231 (239)
                       |+++. ++..+.+.+.++...                        ...+.+.|.++|....+..... ..++|+++.
T Consensus       298 -g~~~~-~~~~~~~~~~~~~~~------------------------~~~~~~~l~~~gi~v~~g~~~~-~~~iRis~~  348 (365)
T 3get_A          298 -NIKII-DSYTNFITYFFDEKN------------------------STDLSEKLLKKGIIIRNLKSYG-LNAIRITIG  348 (365)
T ss_dssp             -TCEEC-CCSSSEEEEECSSSC------------------------HHHHHHHHHTTTEECEECGGGT-CSEEEEECC
T ss_pred             -CCEEC-CCCCeEEEEECCCCC------------------------HHHHHHHHHHCCEEEEECccCC-CCEEEEEcC
Confidence             88865 556677777775421                        1256667777765544322222 578999976

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}

Probab=99.25  E-value=1.3e-10  Score=101.21  Aligned_cols=152  Identities=16%  Similarity=0.125  Sum_probs=98.0

Q ss_pred             ccEEEEEec----CCCCcccccChhHHHHHHHH--hCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCC-
Q 048438            4 IPLFLCATI----GTTAITAVDPLKPLCDVAKQ--FGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFA-   76 (239)
Q Consensus         4 ~p~~vv~t~----gtt~~G~i~pl~~i~~i~~~--~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~-   76 (239)
                      .|-+|++..    .++.+|.+.|+++|+++|++  +|++++||.||+.+......    .. . ++|+++.++||++++ 
T Consensus       176 ~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~~livD~a~~~~~~~~~p----~~-~-gaDiv~~S~sK~lgg~  249 (427)
T 3hvy_A          176 SIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCYGEFVEEKEP----TD-V-GADIIAGSLIKNIGGG  249 (427)
T ss_dssp             TEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEECTTCTTTSSSCG----GG-G-TCSEEEEETTSGGGTT
T ss_pred             CCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCCEEEEECCccccccCCCC----cc-c-CCeEEEECCccccccc
Confidence            456777777    78999999999999999999  89999999999877532211    11 1 389999999999887 


Q ss_pred             --cccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 048438           77 --TLDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK  154 (239)
Q Consensus        77 --P~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~  154 (239)
                        |.| |+++. +++++......    ..........+-.+..  .+.+++  |......++++..+.+.++.+.|++. 
T Consensus       250 g~~~G-G~i~~-~~~li~~l~~~----~~~~~~g~~~~~~~~~--a~~~~~--gl~~~~~r~~~~~~~a~~la~~L~~~-  318 (427)
T 3hvy_A          250 IATTG-GYIAG-KEEYVTQATFR----VTVPGIGGECGSTFGV--MRSLYE--GLFMAPHVTIEAVKGAVFCARIMELA-  318 (427)
T ss_dssp             TCCSC-EEEEE-CHHHHHHHHHH----HSCTTTGGGCCCCTTC--HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             ccceE-EEEEE-CHHHHHHHHHH----hhcCCcccccCCCHHH--HHHHHH--hHhHHHHHHHHHHHHHHHHHHHHHhC-
Confidence              443 66655 44444332210    0000011111111221  233333  22344678888899999999999987 


Q ss_pred             CeEEEcCCCee-----EEEEEEcC
Q 048438          155 RFEVVFPCHFA-----VVCFRVSP  173 (239)
Q Consensus       155 g~~~~~~~~~~-----iv~f~~~~  173 (239)
                      |+++. |....     |++|.+.+
T Consensus       319 g~~V~-p~~~~~~~~li~~~~l~~  341 (427)
T 3hvy_A          319 GFDVL-PKYNDKRTDIIQAIKFND  341 (427)
T ss_dssp             TCEEE-SCTTSCCSSSEEEEECSS
T ss_pred             CCeec-CCCCCCCceEEEEEeCCC
Confidence            77874 43333     88888853

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=99.25  E-value=5.5e-12  Score=110.70  Aligned_cols=160  Identities=14%  Similarity=0.115  Sum_probs=87.5

Q ss_pred             ccEEEEEecCCCCc-ccc---cChhHHHHHHHHhCCEEEEeccccc-ccc-------cC-c-cccccc-CCCCCcceEEE
Q 048438            4 IPLFLCATIGTTAI-TAV---DPLKPLCDVAKQFGIWVHVDAAYAG-SAC-------IF-P-EFRHFI-DGVEGADSFSL   68 (239)
Q Consensus         4 ~p~~vv~t~gtt~~-G~i---~pl~~i~~i~~~~gi~lhvD~A~~~-~~~-------~~-~-~~~~~~-~~~~~~Ds~~~   68 (239)
                      .+.+|+++..++.+ |.+   +++++|+++|++||+++|+|+||+. +..       .. . ...... .....+|++++
T Consensus       183 ~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~  262 (467)
T 2oqx_A          183 NVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAM  262 (467)
T ss_dssp             GCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEE
T ss_pred             ceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhhccCCeEEE
Confidence            35567777777776 664   5688999999999999999999876 332       01 0 000000 00023788999


Q ss_pred             cCcccCCCcccceEEEeeCc---ccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHH-HHHHHHHHHHHH
Q 048438           69 NAHKWFFATLDCCCLWATNP---EYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENL-RHFLRSHVNMAR  144 (239)
Q Consensus        69 ~~hK~l~~P~g~g~l~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~-~~~~~~~~~la~  144 (239)
                      ++||+++.|.| |+++.++.   +.+.......  ... .... ..+. ..+..+. ++...-.+.+ ++.+++..++++
T Consensus       263 s~sK~~g~~~G-g~~~~~~~~~~~~~~~~~~~~--~~~-~~~~-~~~~-~~~~~~~-al~~~l~~~~~~~~~~~~~~~~~  335 (467)
T 2oqx_A          263 SAKKDAMVPMG-GLLCMKDDSFFDVYTECRTLC--VVQ-EGFP-TYGG-LEGGAME-RLAVGLYDGMNLDWLAYRIAQVQ  335 (467)
T ss_dssp             ESSSTTCCSSC-EEEEECSGGGHHHHHHHHHHH--HHT-TSSC-CCCC-CCHHHHH-HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ecccccCCCCc-eEEEecChhHHHHHHHHHHhh--hcc-CCcc-cccc-hhhhHHH-HHHHhhHhhhhHHHHHHHHHHHH
Confidence            99999988855 55555443   1222111000  000 0000 0111 1111111 2211001111 134455567888


Q ss_pred             HHHHHHhCCCCeEEEcCCCeeEEEEEEc
Q 048438          145 LFERLVSGDKRFEVVFPCHFAVVCFRVS  172 (239)
Q Consensus       145 ~l~~~l~~~~g~~~~~~~~~~iv~f~~~  172 (239)
                      ++.+.|++. ++++. +....++.+.++
T Consensus       336 ~l~~~L~~~-~~~~~-~~~~~~~~~~~~  361 (467)
T 2oqx_A          336 YLVDGLEEI-GVVCQ-QAGGHAAFVDAG  361 (467)
T ss_dssp             HHHHHHHHT-TCCEE-EECSSCEEEEHH
T ss_pred             HHHHHHHHC-CCeee-cCCceEEEEech
Confidence            999999887 88877 656667777764

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=99.25  E-value=3.8e-12  Score=111.75  Aligned_cols=159  Identities=14%  Similarity=0.161  Sum_probs=86.7

Q ss_pred             ccEEEEEecCCCCc-ccc---cChhHHHHHHHHhCCEEEEeccccc-ccccCc----cccc-ccCCC-----CCcceEEE
Q 048438            4 IPLFLCATIGTTAI-TAV---DPLKPLCDVAKQFGIWVHVDAAYAG-SACIFP----EFRH-FIDGV-----EGADSFSL   68 (239)
Q Consensus         4 ~p~~vv~t~gtt~~-G~i---~pl~~i~~i~~~~gi~lhvD~A~~~-~~~~~~----~~~~-~~~~~-----~~~Ds~~~   68 (239)
                      .+.+|+++..++.+ |.+   +++++|+++|++||+++|+|++|+. +.....    .+.. ....+     ..+|++++
T Consensus       183 ~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  262 (467)
T 1ax4_A          183 NIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTM  262 (467)
T ss_dssp             GEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEE
T ss_pred             CeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCchhhhhhhhccccceEEE
Confidence            35677777778888 775   5678999999999999999999765 221000    0000 00000     13789999


Q ss_pred             cCcccCCCcccceEEEeeCc-ccccccccCCCCccCCCCceecCCCCCCh-HHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Q 048438           69 NAHKWFFATLDCCCLWATNP-EYLKNKATESKPVVDYKDWQITLSRSFRS-LKLWFVIRNYGMENLRHFLRSHVNMARLF  146 (239)
Q Consensus        69 ~~hK~l~~P~g~g~l~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~g~~g~~~~~~~~~~la~~l  146 (239)
                      ++||+++.|.| |+++.+++ +++....... ...  ......++..... ..+..+++.+-.   ++.+++..++++++
T Consensus       263 s~sK~~g~~~G-g~~~~~d~~~l~~~~~~~~-~~~--~~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l  335 (467)
T 1ax4_A          263 SAKKDPLLNIG-GLVAIRDNEEIFTLARQRC-VPM--EGFVTYGGLAGRDMAAMVQGLEEGTE---EEYLHYRIGQVKYL  335 (467)
T ss_dssp             ETTSTTCCSSC-EEEEESSCHHHHHHHHHHH-HHH--TCSTTTTTCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH
T ss_pred             eccccCCCCcc-eEEEeCCHHHHHHHHHhhc-ccc--ccccccCCccchHHHHHHHHHHHhhh---hhHHHHHHHHHHHH
Confidence            99999887755 55555434 4432211000 000  0000001111111 112223333211   12444445677888


Q ss_pred             HHHHhCCCCeEEEcCCCeeEEEEE
Q 048438          147 ERLVSGDKRFEVVFPCHFAVVCFR  170 (239)
Q Consensus       147 ~~~l~~~~g~~~~~~~~~~iv~f~  170 (239)
                      .+.|++ ++++++.+.....+.+.
T Consensus       336 ~~~L~~-~~~~~~~~~~~~~~~~~  358 (467)
T 1ax4_A          336 GDRLRE-AGIPIQYPTGGHAVFVD  358 (467)
T ss_dssp             HHHHHH-TTCCBCSSCCSSEEEEE
T ss_pred             HHHHHh-CCCCcccCCCceEEEEe
Confidence            888887 58887666666666666

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=99.25  E-value=6.2e-11  Score=101.58  Aligned_cols=192  Identities=13%  Similarity=0.035  Sum_probs=113.0

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCC-Ccccc
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFF-ATLDC   80 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~-~P~g~   80 (239)
                      +.+|+++..+|.+|.+.|   +++|+++|++||+++++|.+|+....... ... ...+...++++.+++|+++ ....+
T Consensus       162 ~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~-~~~-~~~~~~~~i~~~s~sK~~g~~G~r~  239 (391)
T 3h14_A          162 LAGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAK-AVT-ALELTDECYVINSFSKYFSMTGWRV  239 (391)
T ss_dssp             CSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSC-CCC-GGGTCSSSEEEEESSSTTCCTTSCC
T ss_pred             CeEEEECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCC-CcC-hhhcCCCEEEEEechhccCCcccee
Confidence            456777788999999988   88899999999999999999986543211 111 1112236678889999985 33456


Q ss_pred             eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Q 048438           81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNY-GMENLRHFLRSHVNMARLFERLVSGDKRFEVV  159 (239)
Q Consensus        81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~  159 (239)
                      |+++..+ +........          ....+-....+....++..+ ..+.+++..++..++.+++.+.|++. ++...
T Consensus       240 G~~~~~~-~~~~~~~~~----------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~  307 (391)
T 3h14_A          240 GWMVVPE-DQVRVVERI----------AQNMFICAPHASQVAALAALDCDAELQANLDVYKANRKLMLERLPKA-GFTRI  307 (391)
T ss_dssp             EEEECCG-GGHHHHHHH----------HHHTTCCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH-TCCCB
T ss_pred             EEEEeCH-HHHHHHHHH----------HhhhccCCCHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHc-CCCcc
Confidence            7776633 332221100          00000011122222222222 55677888888889999999999886 55443


Q ss_pred             cCCCe-eEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhc-CcEEEEEEEE---CCEeEEEEEecC
Q 048438          160 FPCHF-AVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINAS-GKAYMTNVVL---GGIYAIRFATGA  232 (239)
Q Consensus       160 ~~~~~-~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~---~g~~~lR~~~~~  232 (239)
                      .++.. ..+.+.++....               +       ...+.+.|.++ |....+....   .+..++|+++..
T Consensus       308 ~~~~~~~~~~~~~~~~~~---------------~-------~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~  363 (391)
T 3h14_A          308 APPDGAFYVYADVSDLTD---------------D-------SRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYAR  363 (391)
T ss_dssp             CCCCBTTEEEEECTTTCS---------------C-------HHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCS
T ss_pred             cCCCeeEEEEEecCccCC---------------C-------HHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecC
Confidence            34443 345555653211               0       12455666655 6554432222   235799999876

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=99.25  E-value=1.3e-10  Score=99.70  Aligned_cols=191  Identities=9%  Similarity=-0.018  Sum_probs=106.8

Q ss_pred             cEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438            5 PLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC   80 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~   80 (239)
                      +.+|++....+++|.+.|    +++|.++|++||+++|+|.+|++.......+.....++ ..|.++++  |.++++.++
T Consensus       180 ~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~-~~d~~t~s--K~~~~G~~~  256 (395)
T 3nx3_A          180 TCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQI-LPDIMTSA--KALGCGLSV  256 (395)
T ss_dssp             EEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTC-CCSEEEEC--GGGTTTSCC
T ss_pred             eEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcchhHHhcCC-CCCEEEec--ccccCCCce
Confidence            466777777788999988    99999999999999999999874311111111012233 27877765  888776778


Q ss_pred             eEEEeeCccc-ccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhC----CCC
Q 048438           81 CCLWATNPEY-LKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSG----DKR  155 (239)
Q Consensus        81 g~l~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~----~~g  155 (239)
                      |+++.++ +. ........      ...+. ....+.......+++.+..   ++..++..++.+++++.|.+    .+.
T Consensus       257 G~~~~~~-~~~~~~~~~~~------~~~~~-~~~~~~~~aa~aal~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~  325 (395)
T 3nx3_A          257 GAFVINQ-KVASNSLEAGD------HGSTY-GGNPLVCAGVNAVFEIFKE---EKILENVNKLTPYLEQSLDELINEFDF  325 (395)
T ss_dssp             EEEEECH-HHHHHHSCTTC------CSSCB-SCCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             EEEEEch-hhhhhhcCCcc------cCCCC-CCCHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            8887754 33 22221100      00010 0111111222233433322   23344445566666665543    444


Q ss_pred             eEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCC
Q 048438          156 FEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLT  235 (239)
Q Consensus       156 ~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t  235 (239)
                      +..+ ++..+++.|.++...                +       ...+.+.|.++|..+...    +..++|+++....|
T Consensus       326 ~~~~-~~~g~~~~~~~~~~~----------------~-------~~~~~~~l~~~Gi~v~~~----~~~~iRi~~~~~~t  377 (395)
T 3nx3_A          326 CKKR-KGLGFMQGLSLDKSV----------------K-------VAKVIQKCQENALLLISC----GENDLRFLPPLILQ  377 (395)
T ss_dssp             EEEE-EEETTEEEEEECTTS----------------C-------HHHHHHHHHHTTEECEEE----TTTEEEECCCTTCC
T ss_pred             eEEE-EeEEEEEEEEeCCcc----------------h-------HHHHHHHHHHCCCEEecC----CCCEEEEECCCCCC
Confidence            4433 334567778876521                0       125666777777665432    46789999766555


Q ss_pred             Cc
Q 048438          236 EE  237 (239)
Q Consensus       236 ~~  237 (239)
                      .+
T Consensus       378 ~e  379 (395)
T 3nx3_A          378 KE  379 (395)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=99.23  E-value=4.9e-10  Score=96.96  Aligned_cols=201  Identities=10%  Similarity=0.013  Sum_probs=106.6

Q ss_pred             ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCccc-ccccCCCCCcceEEEcCcccCCCcc
Q 048438            4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEF-RHFIDGVEGADSFSLNAHKWFFATL   78 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~-~~~~~~~~~~Ds~~~~~hK~l~~P~   78 (239)
                      .+.+|+++...+++|.+.|    +++|.++|++||+++++|.+|++. ...... .....++ .+|++  +++|++++..
T Consensus       199 ~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~-~~~g~~~~~~~~~~-~~di~--s~sK~~~~Gl  274 (426)
T 1sff_A          199 DIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGA-GRTGTLFAMEQMGV-APDLT--TFAKSIAGGF  274 (426)
T ss_dssp             GEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTT-TTTSSSSGGGGTTS-CCSEE--EECGGGGTSS
T ss_pred             ceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhcc-CcccchhhhhhcCC-CCCEE--EEcccccCCC
Confidence            4556666555445998888    999999999999999999999842 111111 0011222 27776  5569987422


Q ss_pred             cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhC----CC
Q 048438           79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSG----DK  154 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~----~~  154 (239)
                      .+|++++++ +.+......   . ..  .+. .........+..+++.+..+   +..++..++.+++.+.|++    .+
T Consensus       275 riG~~~~~~-~~~~~l~~~---~-~~--~~~-~~~~~~~~a~~aal~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~  343 (426)
T 1sff_A          275 PLAGVTGRA-EVMDAVAPG---G-LG--GTY-AGNPIACVAALEVLKVFEQE---NLLQKANDLGQKLKDGLLAIAEKHP  343 (426)
T ss_dssp             CCEEEEEEH-HHHTTSCTT---S-BC--CSS-SSCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             ceEEEEEcH-HHHhhhccC---C-cC--cCC-CCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            268888753 333322110   0 00  000 00111223333344544332   3445556777777777765    34


Q ss_pred             CeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCC
Q 048438          155 RFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATL  234 (239)
Q Consensus       155 g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~  234 (239)
                      .+..+ ++..+++.+.+.+...            ...+.   ......+.+.|.++|..+.....  ...++|+++....
T Consensus       344 ~~~~~-~~~g~~~~~~~~~~~~------------~~~~~---~~~~~~l~~~l~~~gi~v~~~~~--~~~~iRi~~~~~~  405 (426)
T 1sff_A          344 EIGDV-RGLGAMIAIELFEDGD------------HNKPD---AKLTAEIVARARDKGLILLSCGP--YYNVLRILVPLTI  405 (426)
T ss_dssp             TEEEE-EEETTEEEEEEBGGGC------------TTSBC---HHHHHHHHHHHHHTTEECEEEST--TSCEEEECCCTTC
T ss_pred             CeEEE-EEEEEEEEEEEecCcc------------ccCCC---hHHHHHHHHHHHHCCcEEecCCC--CCCEEEEECCccC
Confidence            33332 2346788888853100            00000   11223567777777655443221  2468999976555


Q ss_pred             CCc
Q 048438          235 TEE  237 (239)
Q Consensus       235 t~~  237 (239)
                      |.+
T Consensus       406 ~~~  408 (426)
T 1sff_A          406 EDA  408 (426)
T ss_dssp             CHH
T ss_pred             CHH
Confidence            443

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=99.23  E-value=2e-10  Score=96.21  Aligned_cols=181  Identities=12%  Similarity=0.046  Sum_probs=111.7

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCC-CcccceEE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFF-ATLDCCCL   83 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~-~P~g~g~l   83 (239)
                      +.+|+++..+|.+|.+.|+++|.++|+++++ +++|.+|+........    .......++++.++||+++ ....+|++
T Consensus       136 ~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~-~ivDea~~~~~~~~~~----~~~~~~~~i~~~S~sK~~g~~G~r~G~~  210 (337)
T 3p1t_A          136 DDCVVLANPSNPTGQALSAGELDQLRQRAGK-LLIDETYVDYSSFRAR----GLAYGENELVFRSFSKSYGLAGLRLGAL  210 (337)
T ss_dssp             TEEEEEESSCTTTCCCCCHHHHHHHHHHCSE-EEEECTTGGGSSCSSS----CCCCBTTEEEEEESSSTTCCTTTCCEEE
T ss_pred             CCEEEEeCCCCCCCCCCCHHHHHHHHHhCCc-EEEECCChhhcccccc----ccccCCCEEEEeeCchhccCcchheEEE
Confidence            5678888889999999999999999999997 6679999743211110    1112247889999999986 33456777


Q ss_pred             EeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcCC
Q 048438           84 WATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYG-MENLRHFLRSHVNMARLFERLVSGDKRFEVVFPC  162 (239)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~~  162 (239)
                      +. +++.+.......      ..+      ....+....+...+. .+.++++.++..++.+++.+.|++. |+++. ++
T Consensus       211 ~~-~~~~~~~l~~~~------~~~------~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~  275 (337)
T 3p1t_A          211 FG-PSELIAAMKRKQ------WFC------NVGTLDLHALEAALDNDRAREAHIAKTLAQRRRVADALRGL-GYRVA-SS  275 (337)
T ss_dssp             EC-CHHHHHHHHTTS------CTT------CSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT-TCCBC-CC
T ss_pred             Ee-CHHHHHHHHhhc------CCC------CCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-cCEEC-CC
Confidence            65 333333221100      000      011222222222232 2346677777888889999999887 77764 55


Q ss_pred             CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEec
Q 048438          163 HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATG  231 (239)
Q Consensus       163 ~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~  231 (239)
                      ..+++.|..+..                      .    .+.+.|.++|.............++|++++
T Consensus       276 ~~~~~~~~~~~~----------------------~----~~~~~l~~~gi~v~~g~~~~~~~~iRis~~  318 (337)
T 3p1t_A          276 EANFVLVENAAG----------------------E----RTLRFLRERGIQVKDAGQFGLHHHIRISIG  318 (337)
T ss_dssp             SSSEEEEECTTT----------------------H----HHHHHHHHTTEECEEGGGGTCCSEEEEECC
T ss_pred             CCeEEEEEcCCH----------------------H----HHHHHHHHCCeEEEECccCCCCCeEEEecC
Confidence            667777765431                      1    344566666655444333322468999976

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=99.22  E-value=5.9e-11  Score=101.19  Aligned_cols=192  Identities=14%  Similarity=0.063  Sum_probs=112.7

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccC--CCCCcceEEEcCcccCCCc-c
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFID--GVEGADSFSLNAHKWFFAT-L   78 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~--~~~~~Ds~~~~~hK~l~~P-~   78 (239)
                      |-+|+++..+|.+|.+.|   +++|+++|++||+++++|.+|+.+.... .......  +....+.++.++||+++.| .
T Consensus       159 ~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~  237 (376)
T 2dou_A          159 AKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEG-EAPSPLALPGAKERVVELFSLSKSYNLAGF  237 (376)
T ss_dssp             EEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSS-CCCCGGGSTTGGGTEEEEEEHHHHHTCGGG
T ss_pred             ceEEEECCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCC-CCCChhhcCCCCCcEEEEecchhhcCChhh
Confidence            556777777899999877   6788999999999999999998754321 1101111  1113678889999998644 2


Q ss_pred             cceEEEeeCcccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438           79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE  157 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~  157 (239)
                      .+|+++. +++.+.......      ..+.  .+.. .....+..+++. +.+.+++..++..++.+++.+.|++.  ++
T Consensus       238 r~G~~~~-~~~~~~~l~~~~------~~~~--~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~--~~  305 (376)
T 2dou_A          238 RLGFALG-SEEALARLERVK------GVID--FNQYAGVLRMGVEALKT-PKEVVRGYARVYRERALGMAEALKGV--LS  305 (376)
T ss_dssp             CCEEEEE-CHHHHHHHHHHH------HHHC--CCSCHHHHHHHHHHHTS-CHHHHHHHHHHHHHHHHHHHHHHTTT--SE
T ss_pred             eeEEEec-CHHHHHHHHHHH------Hhcc--cCCCHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHh--cC
Confidence            3688775 333332221000      0000  0111 111222223332 24566777778889999999999886  67


Q ss_pred             EEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEEC--CEeEEEEEecC
Q 048438          158 VVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLG--GIYAIRFATGA  232 (239)
Q Consensus       158 ~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~--g~~~lR~~~~~  232 (239)
                      +..+.....+.+.++...                +       ...+.+.|.++|..........  +..++|+++..
T Consensus       306 ~~~~~~~~~~~~~~~~~~----------------~-------~~~~~~~l~~~gi~v~~g~~f~~~~~~~~Ris~~~  359 (376)
T 2dou_A          306 LLPPRATMYLWGRLPEGV----------------D-------DLEFGLRLVERGVALAPGRGFGPGGKGFVRIALVR  359 (376)
T ss_dssp             ECCCCBSSEEEEECCTTC----------------C-------HHHHHHHHHHTTEECEEGGGGCGGGTTEEEEECCS
T ss_pred             ccCCCeeEEEEEECCCCC----------------C-------HHHHHHHHHHCCEEEcCchhhCCCCCCeEEEEecC
Confidence            654333335667775321                0       1256677777765544322221  34689999864

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=99.22  E-value=1.7e-10  Score=98.79  Aligned_cols=190  Identities=16%  Similarity=0.105  Sum_probs=110.1

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCC-CcceEEEcCcccCCCccc-
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVE-GADSFSLNAHKWFFATLD-   79 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~-~~Ds~~~~~hK~l~~P~g-   79 (239)
                      +-+|+.+..+|.||.+.|   +++|+++|++||+++++|.+|+...... .... +..+. ..++++.+++|+++.| | 
T Consensus       165 ~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~~~~-~~~~~~~~~i~~~s~SK~~~~~-G~  241 (385)
T 1b5p_A          165 TKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEG-EHFS-PGRVAPEHTLTVNGAAKAFAMT-GW  241 (385)
T ss_dssp             EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSS-CCCC-GGGTCTTTEEEEEESTTTTTCG-GG
T ss_pred             CEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCC-CCCC-HHHcCCCCEEEEEechhhcCCc-cc
Confidence            556777788999999866   8999999999999999999998654311 1000 11111 3678899999997644 5 


Q ss_pred             -ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHh-----CHHHHHHHHHHHHHHHHHHHHHHhCC
Q 048438           80 -CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNY-----GMENLRHFLRSHVNMARLFERLVSGD  153 (239)
Q Consensus        80 -~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----g~~g~~~~~~~~~~la~~l~~~l~~~  153 (239)
                       +|+++.. ++.+......          ..........+..+.+...+     +.+.+++..++..+..+++.+.|++.
T Consensus       242 RiG~~~~~-~~~~~~l~~~----------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  310 (385)
T 1b5p_A          242 RIGYACGP-KEVIKAMASV----------SRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL  310 (385)
T ss_dssp             CCEEEECC-HHHHHHHHHH----------HHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEeC-HHHHHHHHHH----------HhhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHC
Confidence             7888763 3333222100          00000011122222222222     23446667777788888999999887


Q ss_pred             CCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEec
Q 048438          154 KRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATG  231 (239)
Q Consensus       154 ~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~  231 (239)
                       |+++..+.....+...++..+.               +       ...+.+.|.++|..+..........++|+++.
T Consensus       311 -g~~~~~~~~~~~~~~~~~~~~~---------------~-------~~~l~~~l~~~gv~v~~g~~f~~~~~iRis~~  365 (385)
T 1b5p_A          311 -GLKAVRPSGAFYVLMDTSPIAP---------------D-------EVRAAERLLEAGVAVVPGTDFAAFGHVRLSYA  365 (385)
T ss_dssp             -TCCBCCCSBTTEEEEECTTTCS---------------S-------HHHHHHHHHHTTEECEESGGGTCTTEEEEECC
T ss_pred             -CCeecCCCeeEEEEEecCCCCC---------------C-------HHHHHHHHHHCCeEEecccccCCCCeEEEEec
Confidence             8776543332334445532111               0       12566677766665544332221358999976

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=99.21  E-value=5.4e-11  Score=102.71  Aligned_cols=192  Identities=8%  Similarity=0.003  Sum_probs=112.6

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccC--CCCCcceEEEcCcccCCCc-c
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFID--GVEGADSFSLNAHKWFFAT-L   78 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~--~~~~~Ds~~~~~hK~l~~P-~   78 (239)
                      +-+|+++..+|.+|.+.|   +++|+++|+++|+++++|.+|+.+.... .......  +....|+++.++||+++.| .
T Consensus       182 ~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~  260 (404)
T 2o1b_A          182 TKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDA-KNPSILASENGKDVAIEIYSLSKGYNMSGF  260 (404)
T ss_dssp             EEEEEECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSS-CCCCGGGSTTHHHHEEEEEESTTTTTCGGG
T ss_pred             ceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCC-CCCChhhcCCCCCCEEEEEecchhccCchh
Confidence            456667777888999876   7889999999999999999998754311 1111111  1113678899999998644 2


Q ss_pred             cceEEEeeCcccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438           79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE  157 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~  157 (239)
                      .+|+++. +++.+.......      ..+.  .+.. .....+..+++. +.+.+++..++..++.+++.+.|++. |++
T Consensus       261 r~G~~~~-~~~~~~~l~~~~------~~~~--~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~  329 (404)
T 2o1b_A          261 RVGFAVG-NKDMIQALKKYQ------THTN--AGMFGALQDAAIYALNH-YDDFLEEQSNVFKTRRDRFEAMLAKA-DLP  329 (404)
T ss_dssp             CCEEEEE-CHHHHHHHHHHH------HHHC--CCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred             heEeEec-CHHHHHHHHHHH------hhcc--CCCCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHhc-CCe
Confidence            4688776 344333221100      0000  0111 111222223333 34566777777888999999999987 887


Q ss_pred             EEcCCCee-EEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHh-cCcEEEEEEEEC--CEeEEEEEecC
Q 048438          158 VVFPCHFA-VVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINA-SGKAYMTNVVLG--GIYAIRFATGA  232 (239)
Q Consensus       158 ~~~~~~~~-iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~~--g~~~lR~~~~~  232 (239)
                      +.. ++.+ .+.+.++.. .               +       ...+.++|.+ .|..+.......  +..++|+++..
T Consensus       330 ~~~-~~~g~~~~~~~~~~-~---------------~-------~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~  384 (404)
T 2o1b_A          330 FVH-AKGGIYVWLETPPG-Y---------------D-------SEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLAL  384 (404)
T ss_dssp             EEC-CCBSSEEEEECCTT-C---------------C-------HHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCS
T ss_pred             ecC-CCcceEEEEeCCCC-C---------------C-------HHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcC
Confidence            764 4445 466676531 1               0       1245566653 465544322221  34689999875

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}

Probab=99.21  E-value=5.2e-11  Score=104.04  Aligned_cols=199  Identities=12%  Similarity=0.020  Sum_probs=116.3

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccc--cCCCCCcceEEEcCcccCC-Ccc
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--IDGVEGADSFSLNAHKWFF-ATL   78 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~~~~~~~Ds~~~~~hK~l~-~P~   78 (239)
                      +-+|+++..+|.+|.+.|   +++|+++|++||+++++|.+|+.....-......  +......++++.+++|+++ ...
T Consensus       210 ~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~  289 (449)
T 3qgu_A          210 TDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFTGV  289 (449)
T ss_dssp             CSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTCTTC
T ss_pred             CCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCCccc
Confidence            345666678899999876   7888888999999999999998754321100000  1111236788999999986 334


Q ss_pred             cceEEEeeCcccccccccCCCCccC-CCCceecCCCCCChHHHHHHHHHhC---HHHHHHHHHHHHHHHHHHHHHHhCCC
Q 048438           79 DCCCLWATNPEYLKNKATESKPVVD-YKDWQITLSRSFRSLKLWFVIRNYG---MENLRHFLRSHVNMARLFERLVSGDK  154 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g---~~g~~~~~~~~~~la~~l~~~l~~~~  154 (239)
                      .+|+++..+ +.+.....   .... ..............+...++...+.   .+.+++..++..++.+++.+.|++. 
T Consensus       290 r~G~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-  364 (449)
T 3qgu_A          290 RLGWTVVPK-ALKYANGE---PVHADWNRVMTTCFNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEM-  364 (449)
T ss_dssp             CCEEEECCT-TCBCTTSC---BHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             eeEEEecCH-HHHhhhhh---hHHHHHHHHhhcccCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHC-
Confidence            578877643 33321000   0000 0000000000112233333333333   3456777888889999999999987 


Q ss_pred             CeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhc-CcEEEEEEE--ECCEeEEEEEec
Q 048438          155 RFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINAS-GKAYMTNVV--LGGIYAIRFATG  231 (239)
Q Consensus       155 g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~--~~g~~~lR~~~~  231 (239)
                      |+++..+...+.+.+.+++..                        ...+.+.|.++ |.++.+...  ..+..++|+++.
T Consensus       365 g~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis~~  420 (449)
T 3qgu_A          365 GFSVYGGDDAPYIWVGFPGKP------------------------SWDVFAEILERCNIVTTPGSGYGPAGEGFVRASAF  420 (449)
T ss_dssp             TCCEEESSSSSEEEEECTTSC------------------------HHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECC
T ss_pred             CCeeeCCCCeeEEEEECCCCC------------------------HHHHHHHHHHHCCEEEecchHhCCCCCCeEEEEec
Confidence            888876655777777776211                        12455566665 554443222  124578999964


Q ss_pred             C
Q 048438          232 A  232 (239)
Q Consensus       232 ~  232 (239)
                      .
T Consensus       421 ~  421 (449)
T 3qgu_A          421 G  421 (449)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=99.21  E-value=4.6e-11  Score=103.20  Aligned_cols=197  Identities=13%  Similarity=0.089  Sum_probs=112.0

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccc--cCCCCCcceEEEcCcccCCCc-c
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--IDGVEGADSFSLNAHKWFFAT-L   78 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~~~~~~~Ds~~~~~hK~l~~P-~   78 (239)
                      +-+|+++..+|.+|.+.|   +++|+++|++||+++++|.+|+.+..........  +.+....|+++.++||+++.| .
T Consensus       173 ~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~  252 (412)
T 2x5d_A          173 PRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAGW  252 (412)
T ss_dssp             CSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCSCTTS
T ss_pred             ceEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccCCccc
Confidence            345566777889999876   6889999999999999999998765421111110  111124789999999998633 2


Q ss_pred             cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 048438           79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEV  158 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~  158 (239)
                      .+|+++++ ++.+......    .....++   ........+..+++. +.+.+++..++..++.+++.+.|++. |+++
T Consensus       253 r~G~~~~~-~~~~~~l~~~----~~~~~~~---~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~  322 (412)
T 2x5d_A          253 RIGFMVGN-PELVSALARI----KSYHDYG---TFTPLQVAAIAALEG-DQQCVRDIARQYQQRRDVLVKGLREA-GWMV  322 (412)
T ss_dssp             CCEEEEEC-HHHHHHHHHH----HHHHCCC---CCHHHHHHHHHHHHS-CSHHHHHHHHHHHHHHHHHHHHHHHH-TCCC
T ss_pred             ceEEEEcC-HHHHHHHHHH----HhhhccC---CCHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHHC-CCEe
Confidence            36888873 3433222110    0000000   001111222223332 23456777778888999999999886 7776


Q ss_pred             EcCCCee-EEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHh-cCcEEEEEEEE--CCEeEEEEEecC
Q 048438          159 VFPCHFA-VVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINA-SGKAYMTNVVL--GGIYAIRFATGA  232 (239)
Q Consensus       159 ~~~~~~~-iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~--~g~~~lR~~~~~  232 (239)
                      + ++..+ ++.+.++.. .              ..     .-...+.+.|.+ .|..+......  .+..++|+++..
T Consensus       323 ~-~~~~g~~~~~~~~~~-~--------------~~-----~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~  379 (412)
T 2x5d_A          323 E-NPKASMYVWAKIPEP-Y--------------AH-----LGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIE  379 (412)
T ss_dssp             C-CCSBSSEEEEECCTT-T--------------GG-----GCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS
T ss_pred             c-CCCeeeEEEEEcCCc-c--------------CC-----CCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEecC
Confidence            5 44444 566676431 0              00     001256666654 46554433222  134689999875

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=99.21  E-value=2.6e-10  Score=99.04  Aligned_cols=193  Identities=10%  Similarity=-0.039  Sum_probs=108.8

Q ss_pred             ccEEEEEecC-CCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-
Q 048438            4 IPLFLCATIG-TTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-   77 (239)
Q Consensus         4 ~p~~vv~t~g-tt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-   77 (239)
                      .+.+|+++.. ++.+|.+.|    +++|.++|++||+++|+|.+|++.......+.....++ ..|+++++  |+++++ 
T Consensus       204 ~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~~~~~~~~~~-~~d~~t~s--K~l~~G~  280 (429)
T 1s0a_A          204 EIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEI-APDILCLG--KALTGGT  280 (429)
T ss_dssp             TEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTC-CCSEEEEC--GGGGTSS
T ss_pred             CEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccchHHHhhhcCC-CCCEEEec--ccccCCC
Confidence            3456767766 788998887    99999999999999999999974211110000001233 37887665  998877 


Q ss_pred             ccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHH---HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC-
Q 048438           78 LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLK---LWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD-  153 (239)
Q Consensus        78 ~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~-  153 (239)
                      .++|++++++ +.+.........     .+.....-....+.   ...+++.+..+   +..++..++.+++.+.|+++ 
T Consensus       281 ~~iG~~~~~~-~~~~~l~~~~~~-----~~~~~~t~~~n~~~~~a~~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l~  351 (429)
T 1s0a_A          281 MTLSATLTTR-EVAETISNGEAG-----CFMHGPTFMGNPLACAAANASLAILESG---DWQQQVADIEVQLREQLAPAR  351 (429)
T ss_dssp             SCCEEEEECH-HHHHHHHTSTTS-----SCSCCCTTTTCHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHGGGG
T ss_pred             ccceEEEeCH-HHHHHhhcCCCc-----ccccCCCCCCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHh
Confidence            7889988753 433322110000     00000000112222   23344433222   34556668888999998774 


Q ss_pred             --CCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEec
Q 048438          154 --KRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATG  231 (239)
Q Consensus       154 --~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~  231 (239)
                        +++..+ ++..+++.+.++...                +       ...+.+.|.++|.... +  . + .++|++++
T Consensus       352 ~~~~~~~~-~~~g~~~~~~~~~~~----------------~-------~~~l~~~l~~~Gi~v~-~--~-~-~~iRis~~  402 (429)
T 1s0a_A          352 DAEMVADV-RVLGAIGVVETTHPV----------------N-------MAALQKFFVEQGVWIR-P--F-G-KLIYLMPP  402 (429)
T ss_dssp             GCTTEEEE-EEETTEEEEEESSCB----------------C-------HHHHHHHHHHTTEECC-C--B-T-TEEEECCC
T ss_pred             cCCCEEEE-EEeeEEEEEEECCcc----------------c-------HHHHHHHHHHCCCEEe-c--c-C-CEEEEECC
Confidence              565433 233457777775421                0       1245666766665433 2  1 2 58999976


Q ss_pred             CCCCCc
Q 048438          232 ATLTEE  237 (239)
Q Consensus       232 ~~~t~~  237 (239)
                      ...|++
T Consensus       403 ~~~t~e  408 (429)
T 1s0a_A          403 YIILPQ  408 (429)
T ss_dssp             TTCCHH
T ss_pred             CCCCHH
Confidence            666554

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=99.20  E-value=1.5e-10  Score=101.01  Aligned_cols=151  Identities=15%  Similarity=0.054  Sum_probs=94.3

Q ss_pred             ccEEEEEec----CCCCcccccChhHHHHHHHH--hCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCC-
Q 048438            4 IPLFLCATI----GTTAITAVDPLKPLCDVAKQ--FGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFA-   76 (239)
Q Consensus         4 ~p~~vv~t~----gtt~~G~i~pl~~i~~i~~~--~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~-   76 (239)
                      .+-+|++..    .++.+|.+.|+++|+++|++  +|++++||.+|+.+......     ..+ ++|+++.++||++++ 
T Consensus       165 ~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~~-----~~~-g~Di~~~S~sK~lgg~  238 (431)
T 3ht4_A          165 NTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEP-----CHV-GADLMAGSLIKNPGGG  238 (431)
T ss_dssp             TEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCCG-----GGT-TCSEEEEETTSGGGTT
T ss_pred             CCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCCc-----ccc-CCeEEEcCccccCCCC
Confidence            356677776    67889999999999999999  99999999999887543221     112 389999999999766 


Q ss_pred             --cccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 048438           77 --TLDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK  154 (239)
Q Consensus        77 --P~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~  154 (239)
                        |.| |+++.+ ++.+....... ..   .......+..+...  +.+++  +......++++..++++++.+.|++. 
T Consensus       239 ~~~~G-G~v~~~-~~li~~l~~~~-~~---~~~g~~~~~~~~~~--~~~~~--~l~~~~~~~~~~~~~a~~l~~~L~~~-  307 (431)
T 3ht4_A          239 IVKTG-GYIVGK-EQYVEACAYRL-TS---PGIGAEAGASLYSL--QEMYQ--GFFLAPHVAGQALKGAIFTAAFLEKL-  307 (431)
T ss_dssp             TCSSC-EEEEEC-HHHHHHHHHHH-SC---TTTTTSCSCCCSCS--HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             CCCce-EEEEec-HHHHHHHHHHh-cc---CCcccccCccHHHH--HHHHh--HhhhHHHHHHHHHHHHHHHHHHHHhC-
Confidence              666 777664 44332221100 00   00000111111111  11222  22344667788889999999999886 


Q ss_pred             CeEEEcCCCee-----EEEEEEc
Q 048438          155 RFEVVFPCHFA-----VVCFRVS  172 (239)
Q Consensus       155 g~~~~~~~~~~-----iv~f~~~  172 (239)
                      |+++. |....     |++|.++
T Consensus       308 g~~v~-p~~~~~~~~li~~i~l~  329 (431)
T 3ht4_A          308 GMNTS-PAWNAPRTDLIQSVQFD  329 (431)
T ss_dssp             TCCEE-SCTTSCCSSSCCEEECC
T ss_pred             cCEec-CCCCCCCccEEEEEEeC
Confidence            67764 32333     7778775

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=99.20  E-value=7.4e-11  Score=101.36  Aligned_cols=189  Identities=11%  Similarity=-0.045  Sum_probs=108.5

Q ss_pred             ccEEEEEecCCCCccc----ccChhHHHHHHHHhCCEEEEecccccccccCccccc-ccCCCCCcceEEEcCcccCCCcc
Q 048438            4 IPLFLCATIGTTAITA----VDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRH-FIDGVEGADSFSLNAHKWFFATL   78 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~----i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~-~~~~~~~~Ds~~~~~hK~l~~P~   78 (239)
                      .+.+|+++..++.+|.    .+++++|+++|++||+++++|++|++. ......-. ...+. .+|++++  +|+++++.
T Consensus       183 ~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~-~~~g~~~~~~~~~~-~~d~~s~--sK~~~~G~  258 (397)
T 2ord_A          183 DVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGM-GRTGKLFAYQKYGV-VPDVLTT--AKGLGGGV  258 (397)
T ss_dssp             TEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTT-TTTSSSSHHHHHTC-CCSEEEE--CGGGGTTS
T ss_pred             CeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCC-ccCccchhhhhhCC-CCCeeee--ccccCCCc
Confidence            3567888888899999    478999999999999999999999732 21111100 01122 2787755  79998766


Q ss_pred             cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC----C
Q 048438           79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD----K  154 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~----~  154 (239)
                      .+|++++++. .. .....    ...  .+. ............+++.+..   ++..++..++++++.+.|++.    +
T Consensus       259 r~G~~~~~~~-~~-~l~~~----~~~--~~~-~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~  326 (397)
T 2ord_A          259 PIGAVIVNER-AN-VLEPG----DHG--TTF-GGNPLACRAGVTVIKELTK---EGFLEEVEEKGNYLMKKLQEMKEEYD  326 (397)
T ss_dssp             CCEEEEECST-TC-CCCTT----SSC--CSS-TTCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             CeEEEEEchH-hc-ccCCC----CcC--CCC-CCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            7899887543 33 22110    000  000 0011112223334444433   345556667888888888653    2


Q ss_pred             CeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCC
Q 048438          155 RFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATL  234 (239)
Q Consensus       155 g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~  234 (239)
                      .+... ++..+++.|.++...                       ....+.+.|.++|......    +..++|+++....
T Consensus       327 ~~~~~-~~~g~~~~~~~~~~~-----------------------~~~~l~~~l~~~gi~v~~~----~~~~iRis~~~~~  378 (397)
T 2ord_A          327 VVADV-RGMGLMIGIQFREEV-----------------------SNREVATKCFENKLLVVPA----GNNTIRFLPPLTV  378 (397)
T ss_dssp             TEEEE-EEETTEEEEEECTTS-----------------------CHHHHHHHHHHTTEECEEE----TTTEEEECCCTTC
T ss_pred             ceEEE-EEEeEEEEEEECChH-----------------------HHHHHHHHHHHCCCEEccC----CCCEEEEECCcCC
Confidence            22211 334567888876421                       0125666776666554432    3568999975444


Q ss_pred             CC
Q 048438          235 TE  236 (239)
Q Consensus       235 t~  236 (239)
                      |.
T Consensus       379 ~~  380 (397)
T 2ord_A          379 EY  380 (397)
T ss_dssp             CH
T ss_pred             CH
Confidence            43

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=99.20  E-value=4.6e-10  Score=97.48  Aligned_cols=193  Identities=10%  Similarity=-0.011  Sum_probs=112.0

Q ss_pred             ccEEEEEecCCCCcccccC---hhHHHHHHHH-----hCCEEEEecccccccccCccccc---ccCCCCCc---ceEEEc
Q 048438            4 IPLFLCATIGTTAITAVDP---LKPLCDVAKQ-----FGIWVHVDAAYAGSACIFPEFRH---FIDGVEGA---DSFSLN   69 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p---l~~i~~i~~~-----~gi~lhvD~A~~~~~~~~~~~~~---~~~~~~~~---Ds~~~~   69 (239)
                      .+.+|+++..+|.+|.+.|   +++|+++|++     ||+++++|.+|+...........   .+.+....   ++++.+
T Consensus       189 ~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s  268 (430)
T 2x5f_A          189 DKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDG  268 (430)
T ss_dssp             SEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEE
T ss_pred             CCEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEEe
Confidence            5667777888999999999   8999999999     99999999999865432110111   12121224   677899


Q ss_pred             CcccCCCc-ccceEEEe--eCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhC-----HHHHHHHHHHHHH
Q 048438           70 AHKWFFAT-LDCCCLWA--TNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYG-----MENLRHFLRSHVN  141 (239)
Q Consensus        70 ~hK~l~~P-~g~g~l~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-----~~g~~~~~~~~~~  141 (239)
                      +||+++.| ..+|++++  .+++.+.......    ..  ......-....+..+.+...+.     .+.+++..++..+
T Consensus       269 ~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~----~~--~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~  342 (430)
T 2x5f_A          269 ATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKV----KG--LIRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKE  342 (430)
T ss_dssp             HHHHTTCGGGCCEEEEEBCCCHHHHHHHHHHH----HH--HHHTTTSSCCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             cccCCCCCCCCeEEEEEecCCHHHHHHHHHHH----hh--hhhcccCCCChHHHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence            99998644 22688887  2333332221000    00  0000000011222222222221     1233446677778


Q ss_pred             HHHHHHHHHh----CCCCeEEEcCCCee-EEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHh-cCcEEE
Q 048438          142 MARLFERLVS----GDKRFEVVFPCHFA-VVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINA-SGKAYM  215 (239)
Q Consensus       142 la~~l~~~l~----~~~g~~~~~~~~~~-iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~  215 (239)
                      +.+++.+.|+    +. |+++.. +..+ .+.+.+++..                        ...+.+.|.+ +|..+.
T Consensus       343 ~~~~l~~~L~~~~~~~-g~~~~~-~~~g~~~~~~~~~~~------------------------~~~~~~~l~~~~gi~v~  396 (430)
T 2x5f_A          343 RYEVTKEVVYADQYHS-HWQAYD-FNSGYFMAIKVHDVD------------------------PEALRKHLIDKYSIGVI  396 (430)
T ss_dssp             HHHHHHHHHTCGGGTT-TEEECC-CCBSSEEEEEESSSC------------------------HHHHHHHHHHHHCEECE
T ss_pred             HHHHHHHHHHhhCCCC-CceeeC-CCceEEEEeCCCCCC------------------------HHHHHHHHHHhCCEEEe
Confidence            8899999998    54 788764 4444 4777776211                        1256667776 565544


Q ss_pred             EEEEECCEeEEEEEecC
Q 048438          216 TNVVLGGIYAIRFATGA  232 (239)
Q Consensus       216 ~~~~~~g~~~lR~~~~~  232 (239)
                      ..    +..++|+++..
T Consensus       397 ~g----~~~~iRis~~~  409 (430)
T 2x5f_A          397 AL----NATDIRIAFSC  409 (430)
T ss_dssp             EC----SSSEEEEEGGG
T ss_pred             cC----CCCeEEEEEec
Confidence            32    45689999884

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=99.19  E-value=8.2e-11  Score=102.97  Aligned_cols=158  Identities=13%  Similarity=0.090  Sum_probs=88.3

Q ss_pred             EEEEEecCCC-CcccccC---hhHHHHHHHHhCCEEEEeccccccc--------ccCccccc--c--cCCCCCcceEEEc
Q 048438            6 LFLCATIGTT-AITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSA--------CIFPEFRH--F--IDGVEGADSFSLN   69 (239)
Q Consensus         6 ~~vv~t~gtt-~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~--------~~~~~~~~--~--~~~~~~~Ds~~~~   69 (239)
                      .+|+++..++ .+|.+.|   +++|+++|++||+++|+|++|+.|.        ........  .  ..+ ...|+++++
T Consensus       176 ~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~-~~~d~~~~S  254 (456)
T 2ez2_A          176 AYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMF-SYADGCTMS  254 (456)
T ss_dssp             EEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHH-TTCSEEEEE
T ss_pred             eEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhc-ccCCEEEEe
Confidence            5566665555 8998877   9999999999999999999998751        11111000  0  001 137999999


Q ss_pred             CcccCCCcccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHH-HHHHHHHHHHHHHHHH
Q 048438           70 AHKWFFATLDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENL-RHFLRSHVNMARLFER  148 (239)
Q Consensus        70 ~hK~l~~P~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~-~~~~~~~~~la~~l~~  148 (239)
                      +||+++.| ..|+++.++++..............   +....+.....+.. .++..+  +.+ ++..++..++.+++.+
T Consensus       255 ~kk~~~~~-~gG~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~a-~a~~~~--~~~~~~~~~~~~~~~~~l~~  327 (456)
T 2ez2_A          255 GKKDCLVN-IGGFLCMNDDEMFSSAKELVVVYEG---MPSYGGLAGRDMEA-MAIGLR--EAMQYEYIEHRVKQVRYLGD  327 (456)
T ss_dssp             TTTTTCCS-SCEEEEESCHHHHHHHHHHHHHHTC---CTTTTTCCHHHHHH-HHHHHH--HHTCHHHHHHHHHHHHHHHH
T ss_pred             CcccCCCC-ceeEEEECCHHHHHHHHHHHhhccC---cccccCcchhHHHH-HHHHHH--HHhHHHHHHHHHHHHHHHHH
Confidence            99997755 3576666444433221100000000   00011111111111 011111  222 3556666788899999


Q ss_pred             HHhCCCCeEEEcCCCeeEEEEEEc
Q 048438          149 LVSGDKRFEVVFPCHFAVVCFRVS  172 (239)
Q Consensus       149 ~l~~~~g~~~~~~~~~~iv~f~~~  172 (239)
                      .|++. |++++.+...+.+.+.+.
T Consensus       328 ~L~~~-g~~~~~p~~~~~~~~~~~  350 (456)
T 2ez2_A          328 KLKAA-GVPIVEPVGGHAVFLDAR  350 (456)
T ss_dssp             HHHHT-TCCBCSSCCSSEEEEEHH
T ss_pred             HHhcC-CCccccCCCceEEEEEhH
Confidence            99885 887766655666666653

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=99.19  E-value=1.6e-10  Score=101.20  Aligned_cols=196  Identities=10%  Similarity=0.056  Sum_probs=114.9

Q ss_pred             ccEEE-EEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCC--CCcceEEEcCcccCCCc
Q 048438            4 IPLFL-CATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGV--EGADSFSLNAHKWFFAT   77 (239)
Q Consensus         4 ~p~~v-v~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~--~~~Ds~~~~~hK~l~~P   77 (239)
                      .|-+| +....+|.+|.+.|   +++|.++|++||+++++|.+|+.+......... +..+  ...+.+..+++|+++ |
T Consensus       216 ~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~-~~~~~~~~~vi~~~S~SK~~~-~  293 (448)
T 3aow_A          216 KVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKK-IKALDNEGRVIYLGTFSKILA-P  293 (448)
T ss_dssp             CEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCC-TGGGCTTSCEEEEEESTTTTC-G
T ss_pred             CCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcC-HHhcCCCCCEEEEccchhhcc-c
Confidence            45555 55677899999877   568999999999999999999876432111100 1111  135678899999987 4


Q ss_pred             cc--ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHhC-C
Q 048438           78 LD--CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYG-MENLRHFLRSHVNMARLFERLVSG-D  153 (239)
Q Consensus        78 ~g--~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~g~~~~~~~~~~la~~l~~~l~~-~  153 (239)
                       |  +|+++.. ++.+.......      ..+.. +...+....+..+++..+ .+.+++..++..++.+++.+.|++ .
T Consensus       294 -GlriG~v~~~-~~l~~~l~~~~------~~~~~-~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  364 (448)
T 3aow_A          294 -GFRIGWMVGD-PGIIRKMEIAK------QSTDL-CTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFM  364 (448)
T ss_dssp             -GGCCEEEEEC-HHHHHHHHHHH------HHHHS-SCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             -cccEEEEEeC-HHHHHHHHHHH------HHhcC-CCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence             4  7888874 33333221000      00000 010111122222333211 234555666666888889999986 5


Q ss_pred             C-CeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEE----CCEeEEEE
Q 048438          154 K-RFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVL----GGIYAIRF  228 (239)
Q Consensus       154 ~-g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~----~g~~~lR~  228 (239)
                      | ++++..+...+.+.++++...                +       ...+.++|.++|..+......    .+..++|+
T Consensus       365 ~~g~~~~~p~~g~~~~v~~~~~~----------------~-------~~~l~~~l~~~gV~v~pg~~f~~~~~~~~~iRl  421 (448)
T 3aow_A          365 PEGVKWTKPEGGMFIWVTLPDGI----------------D-------SKKMLERAIKKGVAYVPGEAFYAHRDVKNTMRL  421 (448)
T ss_dssp             CTTCEECCCSBSSEEEEECSTTC----------------C-------HHHHHHHHHHTTEECEEGGGGSTTCCCCSEEEE
T ss_pred             CCCeEEeCCCccEEEEEEcCCCC----------------C-------HHHHHHHHHHCCcEEEcchhhcCCCCCCCEEEE
Confidence            6 688765555567777775311                0       125667777776655543322    24578999


Q ss_pred             EecCC
Q 048438          229 ATGAT  233 (239)
Q Consensus       229 ~~~~~  233 (239)
                      ++...
T Consensus       422 s~~~~  426 (448)
T 3aow_A          422 NFTYV  426 (448)
T ss_dssp             ECSSS
T ss_pred             EeCCC
Confidence            98764

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=99.19  E-value=8.3e-11  Score=99.31  Aligned_cols=188  Identities=12%  Similarity=-0.006  Sum_probs=113.7

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhC-CEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-ccceE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFG-IWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-LDCCC   82 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~g-i~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~g~   82 (239)
                      +-+|+++..+|.+|.+.|+++|.++++.++ .++++|.+|+............... ...++++.+++|+++.| ..+|+
T Consensus       130 ~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~-~~~~i~~~S~sK~~~~~G~r~G~  208 (350)
T 3fkd_A          130 MDFCWLCNPNNPDGRLLQRTEILRLLNDHPDTTFVLDQSYVSFTTEEVIRPADIKG-RKNLVMVYSFSHAYGIPGLRIGY  208 (350)
T ss_dssp             CSEEEEESSCTTTCCCCCHHHHHHHHHHCTTSEEEEECTTTTSCSSCCCCGGGGTT-CSSEEEEEESHHHHSCGGGCCEE
T ss_pred             CCEEEEeCCCCCcCCCCCHHHHHHHHHhCCCCEEEEECchhhhccCcchhhHHhhc-CCCEEEEecCchhccCcchheEe
Confidence            446667888999999999999999999876 7999999997543321111111211 23568889999998733 55787


Q ss_pred             EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcC
Q 048438           83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGM-ENLRHFLRSHVNMARLFERLVSGDKRFEVVFP  161 (239)
Q Consensus        83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~  161 (239)
                      ++. +++.........      ..+      ....+..+.+...+.. +.+.+++++..++.+++.+.|++++++++. +
T Consensus       209 ~~~-~~~~~~~~~~~~------~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~  274 (350)
T 3fkd_A          209 IVA-NKDFMKRVAAFS------TPW------AVNALAIEAAKFILIHPAQFTLPIRKWQRNTVDFITALNRLDGVEVH-P  274 (350)
T ss_dssp             EEC-CHHHHHHHHTTC------CTT------CSCHHHHHHHHHHHHCTTTTCCCHHHHHHHHHHHHHHHHHSTTEEEC-C
T ss_pred             EEe-CHHHHHHHHHhC------CCC------CCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEC-C
Confidence            776 444433322110      001      1112333332222211 113334444458888999999888899874 5


Q ss_pred             CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHh-cCcEEEEEEEE--CCEeEEEEEec
Q 048438          162 CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINA-SGKAYMTNVVL--GGIYAIRFATG  231 (239)
Q Consensus       162 ~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~--~g~~~lR~~~~  231 (239)
                      +..+.+.++++...                        ...+.+.|.+ .|.........  .+..++|+++.
T Consensus       275 ~~~~~~~~~~~~~~------------------------~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~~  323 (350)
T 3fkd_A          275 SGTTFFLLRLKKGT------------------------AAELKKYMLEEYNMLIRDASNFRGLDESYVRITTQ  323 (350)
T ss_dssp             CSSSEEEEEESSSC------------------------HHHHHHHHHHTTCEECEECTTSTTCCTTEEEEECC
T ss_pred             CCCcEEEEECCCCC------------------------HHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEcC
Confidence            66777778886521                        1256677777 55554433222  23578999976

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=99.17  E-value=4.3e-10  Score=96.39  Aligned_cols=157  Identities=8%  Similarity=0.025  Sum_probs=91.8

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEE--cCcccCCCcccceE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSL--NAHKWFFATLDCCC   82 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~--~~hK~l~~P~g~g~   82 (239)
                      +.+|+++   +.+|...|+++|.++|+++|+++|+|+||+.+... + .+  ..+. ..|..++  .+.|.+.+|.| |+
T Consensus       129 ~~~v~~~---~~~g~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~-~-~~--~~g~-~~~~~~~s~~~~k~~~~g~g-G~  199 (390)
T 3b8x_A          129 TKAILTV---NLLGNPNNFDEINKIIGGRDIILLEDNCESMGATF-N-NK--CAGT-FGLMGTFSSFYSNHIATMEG-GC  199 (390)
T ss_dssp             EEEEEEE---CGGGCCCCHHHHHHHHTTSCCEEEEECTTCTTCEE-T-TE--ETTS-SSSEEEEECCTTSSSCSSSC-EE
T ss_pred             CeEEEEE---CCccChhhHHHHHHHHHHcCCEEEEECcCcccCEE-C-Cc--cccc-ccceEEEEccCCCCCccCCc-eE
Confidence            4455554   36899999999999999999999999999977654 2 11  1121 1344443  34455566666 77


Q ss_pred             EEeeCcccc---cccccCCC-Cc-------------cCC-CCcee-cCCCC--CChHHHHHHHHHhCHHHHHHHHHHHHH
Q 048438           83 LWATNPEYL---KNKATESK-PV-------------VDY-KDWQI-TLSRS--FRSLKLWFVIRNYGMENLRHFLRSHVN  141 (239)
Q Consensus        83 l~~~~~~~l---~~~~~~~~-~~-------------~~~-~~~~~-~~~~~--~~~~~~~~~l~~~g~~g~~~~~~~~~~  141 (239)
                      ++.+++...   ........ ..             ..+ ..+.. ..+.+  ...+..+.++..  .+.++++.++..+
T Consensus       200 ~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~--l~~l~~~~~~~~~  277 (390)
T 3b8x_A          200 IVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQ--LKKLPRFISVRRK  277 (390)
T ss_dssp             EEESCHHHHHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred             EEeCCHHHHHHHHHHHhcCCCccccccccccccccccccccccceeccccccCcCHHHHHHHHHH--HHHHHHHHHHHHH
Confidence            777653321   11110000 00             000 01111 12222  334554544444  3567788888999


Q ss_pred             HHHHHHHHHhCCCCeEEEcCC-CeeE--EEEEEc
Q 048438          142 MARLFERLVSGDKRFEVVFPC-HFAV--VCFRVS  172 (239)
Q Consensus       142 la~~l~~~l~~~~g~~~~~~~-~~~i--v~f~~~  172 (239)
                      +++++.+.|++++++++..++ ..+.  +.+.++
T Consensus       278 ~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~i~~~  311 (390)
T 3b8x_A          278 NAEYFLDKFKDHPYLDVQQETGESSWFGFSFIIK  311 (390)
T ss_dssp             HHHHHHHHHTTCSSEEECCCCSBCCCCEEEEEEC
T ss_pred             HHHHHHHHhcCCCCcccCCCCCCcccEEEEEEec
Confidence            999999999998899886543 3443  444554

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=99.17  E-value=1.4e-09  Score=94.70  Aligned_cols=199  Identities=13%  Similarity=-0.026  Sum_probs=107.8

Q ss_pred             CccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcc
Q 048438            3 LIPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATL   78 (239)
Q Consensus         3 ~~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~   78 (239)
                      ..+.+|++....+++|.+.|    +++|.++|++||+++++|.+|++.............++ ..|.+  ++.|.+++..
T Consensus       200 ~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~~~~~~~~-~~di~--s~sK~~~~G~  276 (439)
T 3dxv_A          200 GSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHEGF-VPDIL--VLGKGLGGGL  276 (439)
T ss_dssp             TCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSSGGGGTTC-CCSEE--EECGGGGTTS
T ss_pred             CCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhcCC-CCCEE--EEcchhcCCc
Confidence            34667777777888999999    99999999999999999999974211111011012233 27777  4569987544


Q ss_pred             cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHH---HHHHhCHHHHHHHHHHHHHHHHHHHHHHhC---
Q 048438           79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWF---VIRNYGMENLRHFLRSHVNMARLFERLVSG---  152 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~g~~g~~~~~~~~~~la~~l~~~l~~---  152 (239)
                      ..|+++.+ ++.+......          ....+- ...+...+   +++.+..   ++..++..++.+++++.|.+   
T Consensus       277 riG~~~~~-~~~~~~~~~~----------~~~~t~-~~~~~~~aa~aal~~~~~---~~~~~~~~~~~~~~~~~l~~~~~  341 (439)
T 3dxv_A          277 PLSAVIAP-AEILDCASAF----------AMQTLH-GNPISAAAGLAVLETIDR---DDLPAMAERKGRLLRDGLSELAK  341 (439)
T ss_dssp             CCEEEEEE-HHHHTSCSSS----------SCCTTT-TCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEC-HHHHhhhcCC----------CcCCCc-ccHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHH
Confidence            56877764 3333322210          000011 12233333   3333222   33445555666666666654   


Q ss_pred             -CCCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEec
Q 048438          153 -DKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATG  231 (239)
Q Consensus       153 -~~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~  231 (239)
                       .+.+..+ ++..+++.+.+......           ...+    ......+.+.|.++|.++... . ....++|++++
T Consensus       342 ~~~~~~~~-~~~g~~~~~~~~~~~~~-----------~~~~----~~~~~~~~~~l~~~Gv~v~~~-~-~~~~~iRi~~~  403 (439)
T 3dxv_A          342 RHPLIGDI-RGRGLACGMELVCDRQS-----------REPA----RAETAKLIYRAYQLGLVVYYV-G-MNGNVLEFTPP  403 (439)
T ss_dssp             HCTTEEEE-EEETTEEEEEEEEETTT-----------TEEC----HHHHHHHHHHHHHHTEECEEE-S-TTSCEEEECCC
T ss_pred             hCCCeEEE-EEEEEEEEEEEecCccc-----------cCCC----HHHHHHHHHHHHHCCcEEeec-C-CCCCEEEEECC
Confidence             3444433 33455666666321000           0001    122345667777777665443 1 22378999976


Q ss_pred             CCCCCc
Q 048438          232 ATLTEE  237 (239)
Q Consensus       232 ~~~t~~  237 (239)
                      ...|.+
T Consensus       404 ~~~t~e  409 (439)
T 3dxv_A          404 LTITET  409 (439)
T ss_dssp             TTCCHH
T ss_pred             CCCCHH
Confidence            655543

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*

Probab=99.17  E-value=1.8e-10  Score=98.56  Aligned_cols=78  Identities=17%  Similarity=0.143  Sum_probs=58.4

Q ss_pred             cEE-EEEecCCCCcc-cccChhHHHHHHHHhCCEEEEecccccccc-cCcccccccCCCCCcceEEEcCcccCCCcccce
Q 048438            5 PLF-LCATIGTTAIT-AVDPLKPLCDVAKQFGIWVHVDAAYAGSAC-IFPEFRHFIDGVEGADSFSLNAHKWFFATLDCC   81 (239)
Q Consensus         5 p~~-vv~t~gtt~~G-~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~-~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g   81 (239)
                      +-+ |+.+..++.+| ...|+++|.++|++||+++++|++|+.+.. +...... .. + ++|+++.++||++++| +.|
T Consensus       141 ~~~~v~~~~p~nptG~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~-~~-~-~~di~~~S~sK~l~g~-~~G  216 (374)
T 2aeu_A          141 DTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPA-LK-L-GADLVVTSTDKLMEGP-RGG  216 (374)
T ss_dssp             TEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCH-HH-H-TCSEEEEETTSSSSSC-SCE
T ss_pred             ccEEEEEccCCCCCCCCcccHHHHHHHHHHcCCEEEEECCcccccccccccCCc-cc-c-CCcEEEecCcccccCc-ceE
Confidence            445 66777788899 899999999999999999999999987631 1111000 11 1 3799999999998775 778


Q ss_pred             EEEee
Q 048438           82 CLWAT   86 (239)
Q Consensus        82 ~l~~~   86 (239)
                      +++.+
T Consensus       217 ~~~~~  221 (374)
T 2aeu_A          217 LLAGK  221 (374)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            87764

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=99.16  E-value=3.6e-10  Score=98.45  Aligned_cols=81  Identities=15%  Similarity=0.114  Sum_probs=57.2

Q ss_pred             ccEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438            4 IPLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC   80 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~   80 (239)
                      .+.+|+++..+|.+|.+.|   +++|+++|++||+++|+|.+|+.+..... +..........++++.++||++....++
T Consensus       206 ~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~i~~~S~sK~~~~G~r~  284 (444)
T 3if2_A          206 RIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNII-YSDAHLNWDNNTILCFSLSKIGLPGMRT  284 (444)
T ss_dssp             CEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCB-CSCCCCCCCTTEEEEEESTTTTCGGGCC
T ss_pred             CceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCcccccc-cccccccCCCCEEEEechhhccCCCCce
Confidence            3567777888899999999   88999999999999999999975321111 0000111224789999999985444567


Q ss_pred             eEEEe
Q 048438           81 CCLWA   85 (239)
Q Consensus        81 g~l~~   85 (239)
                      |+++.
T Consensus       285 G~~~~  289 (444)
T 3if2_A          285 GIIVA  289 (444)
T ss_dssp             EEEEC
T ss_pred             EEEEE
Confidence            76655

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}

Probab=99.16  E-value=3.8e-10  Score=97.34  Aligned_cols=197  Identities=14%  Similarity=0.078  Sum_probs=107.2

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccce
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCC   81 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g   81 (239)
                      +.+|+.+..+|.+|.+.|   +++|+++|++||+++++|.+|+....... +..........++++.+++|++.....+|
T Consensus       181 ~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~~~G~r~G  259 (417)
T 3g7q_A          181 TGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGII-FSEARPLWNPNIILCMSLSKLGLPGSRCG  259 (417)
T ss_dssp             EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCB-CSCCCCCCCTTEEEEEESGGGTCTTSCCE
T ss_pred             ceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCcccccccc-ccccccCCCCCEEEEEechhccCCCcceE
Confidence            567788888999999998   89999999999999999999975321111 10001112247888999999754444577


Q ss_pred             EEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHH-HHH-HHHHHHHHHHHHHHHHhC-CC--Ce
Q 048438           82 CLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMEN-LRH-FLRSHVNMARLFERLVSG-DK--RF  156 (239)
Q Consensus        82 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g-~~~-~~~~~~~la~~l~~~l~~-~~--g~  156 (239)
                      +++. +++.........      ..+.. .........+...++...... ..+ ..++..++.+++.+.|.+ ++  ++
T Consensus       260 ~~~~-~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  331 (417)
T 3g7q_A          260 IIIA-NDKTITAIANMN------GIISL-APGGMGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTIAIIRRYLSEERC  331 (417)
T ss_dssp             EEEC-CHHHHHHHHHHH------HHHCC-CCCSHHHHHHHHHHHTTCHHHHHHHTHHHHHHHHHHHHHHHHHHHCCTTTC
T ss_pred             EEEe-CHHHHHHHHHhh------cceee-CCCcHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCc
Confidence            6665 333332221000      00000 011111222222333222211 112 333444556666666654 34  57


Q ss_pred             EEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEE-CC--------EeEEE
Q 048438          157 EVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVL-GG--------IYAIR  227 (239)
Q Consensus       157 ~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~-~g--------~~~lR  227 (239)
                      ++..+.....+.+.++..+.               +       ...+.+.|.++|..+.+.... .+        ..++|
T Consensus       332 ~~~~~~~g~~~~~~~~~~~~---------------~-------~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~~~~~~iR  389 (417)
T 3g7q_A          332 LIHKPEGAIFLWLWFKDLPI---------------T-------TELLYQRLKARGVLMVPGHYFFPGLDKPWPHTHQCMR  389 (417)
T ss_dssp             EEECCCBSSEEEEECTTCSS---------------C-------HHHHHHHHHHTTEECEEGGGGCTTBSSCCGGGGGEEE
T ss_pred             eeeCCCcceEEEEEcCCCCC---------------C-------HHHHHHHHHHCCEEEECchhhCCCCccccccCCCeEE
Confidence            77766556667777764221               0       125566676676655443221 11        46899


Q ss_pred             EEecC
Q 048438          228 FATGA  232 (239)
Q Consensus       228 ~~~~~  232 (239)
                      +++..
T Consensus       390 is~~~  394 (417)
T 3g7q_A          390 MNYVP  394 (417)
T ss_dssp             EESCS
T ss_pred             EEecC
Confidence            99864

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=99.15  E-value=1.2e-09  Score=95.70  Aligned_cols=193  Identities=9%  Similarity=0.004  Sum_probs=107.0

Q ss_pred             ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc
Q 048438            4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD   79 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g   79 (239)
                      .+.+|++....+++|.+.|    +++|.++|++||+++++|.+|++.......+.....++ ..|+++++  |++  |  
T Consensus       231 ~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~-~~di~t~s--K~l--~--  303 (449)
T 2cjg_A          231 DIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAWAYQQLDV-APDIVAFG--KKT--Q--  303 (449)
T ss_dssp             TEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSTHHHHTC-CCSEEEEC--GGG--S--
T ss_pred             ceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCCccCcceeecccCC-CceEEEec--Ccc--c--
Confidence            4567777776778998888    99999999999999999999984211111011001233 37887665  997  5  


Q ss_pred             ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhC----CCC
Q 048438           80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSG----DKR  155 (239)
Q Consensus        80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~----~~g  155 (239)
                      +|++++++ +........... ......+. .+..+...+...+++.+..   ++..++..++.+++.+.|++    .+.
T Consensus       304 iG~~~~~~-~~~~~l~~~~~~-~~~~~~t~-~~n~~~~~aa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~  377 (449)
T 2cjg_A          304 VCGVMAGR-RVDEVADNVFAV-PSRLNSTW-GGNLTDMVRARRILEVIEA---EGLFERAVQHGKYLRARLDELAADFPA  377 (449)
T ss_dssp             SEEEEECG-GGGGSTTCTTTS-TTSSCCSS-SSCHHHHHHHHHHHHHHHH---HTHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred             EEEEEECH-HHhhhhhhcccC-CcccccCC-CCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence            67777753 444321100000 00000010 1111122223334443322   23455666888888888875    344


Q ss_pred             -eEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCC
Q 048438          156 -FEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATL  234 (239)
Q Consensus       156 -~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~  234 (239)
                       +..+ ++..+++.|.++..                       .....+.+.|.++|.+....    |..++|+++....
T Consensus       378 ~~~~~-~~~g~~~~~~~~~~-----------------------~~~~~~~~~l~~~Gv~v~~~----g~~~iRi~~~~~~  429 (449)
T 2cjg_A          378 VVLDP-RGRGLMCAFSLPTT-----------------------ADRDELIRQLWQRAVIVLPA----GADTVRFRPPLTV  429 (449)
T ss_dssp             TSEEE-EEETTEEEEECSSH-----------------------HHHHHHHHHHHHTTEECEEE----TTTEEEECCCTTC
T ss_pred             ceeeE-eeccEEEEEEECCh-----------------------HHHHHHHHHHHHCCeEEecC----CCCEEEEECCCCC
Confidence             4433 23456777766431                       11235677777766554432    4578999876555


Q ss_pred             CCc
Q 048438          235 TEE  237 (239)
Q Consensus       235 t~~  237 (239)
                      |++
T Consensus       430 t~e  432 (449)
T 2cjg_A          430 STA  432 (449)
T ss_dssp             CHH
T ss_pred             CHH
Confidence            544

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=99.15  E-value=3.5e-10  Score=97.77  Aligned_cols=160  Identities=11%  Similarity=0.013  Sum_probs=96.8

Q ss_pred             ccEEEEEecCCCCccccc---ChhHHHHHHHHhCCEEEEecccccccccCcccccc--cCCCCCcceEEEcCcccCCCc-
Q 048438            4 IPLFLCATIGTTAITAVD---PLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--IDGVEGADSFSLNAHKWFFAT-   77 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~---pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~~~~~~~Ds~~~~~hK~l~~P-   77 (239)
                      .+-+|+++..+|.+|.+.   ++++|+++|++||+++++|.+|+............  .......++++.+++|.++.| 
T Consensus       174 ~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G  253 (422)
T 3fvs_A          174 RTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATG  253 (422)
T ss_dssp             TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHTCGG
T ss_pred             CceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhccCCcc
Confidence            356777788899999998   59999999999999999999998643321111000  111112568888999998633 


Q ss_pred             ccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHH------hCHHHHHHHHHHHHHHHHHHHHHHh
Q 048438           78 LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRN------YGMENLRHFLRSHVNMARLFERLVS  151 (239)
Q Consensus        78 ~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~g~~g~~~~~~~~~~la~~l~~~l~  151 (239)
                      ..+|+++.. ++.+......    .....+.   ........+..+++.      ...+.+++..++..++.+++.+.|+
T Consensus       254 ~r~G~~~~~-~~~~~~~~~~----~~~~~~~---~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~  325 (422)
T 3fvs_A          254 WKVGWVLGP-DHIMKHLRTV----HQNSVFH---CPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQ  325 (422)
T ss_dssp             GCCEEEECC-HHHHHHHHHH----HHTTTCC---CCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEeC-HHHHHHHHHH----HhhccCC---CCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457777763 3333221100    0000010   001111222233332      1234567777888899999999999


Q ss_pred             CCCCeEEEcCCCeeEEEEEEc
Q 048438          152 GDKRFEVVFPCHFAVVCFRVS  172 (239)
Q Consensus       152 ~~~g~~~~~~~~~~iv~f~~~  172 (239)
                      +. |++++.+.....+.+.++
T Consensus       326 ~~-g~~~~~~~~~~~~~~~~~  345 (422)
T 3fvs_A          326 SV-GLKPIIPQGSYFLITDIS  345 (422)
T ss_dssp             TT-TCEEEBCSBSSEEEEECH
T ss_pred             Hc-CCeecCCCeeeEEEEech
Confidence            87 898876666666666654

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=99.14  E-value=1.1e-09  Score=95.09  Aligned_cols=155  Identities=10%  Similarity=0.001  Sum_probs=94.2

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCc--ccCCCcccceE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAH--KWFFATLDCCC   82 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~h--K~l~~P~g~g~   82 (239)
                      +-+|+++   +.+|...|+++|.++|+++|+++++|++|+.+... +. +. +..  ..|++++++|  |++.+ ...|+
T Consensus       139 ~~~v~~~---~~tG~~~~l~~i~~la~~~~~~li~Dea~~~g~~~-~~-~~-~~~--~~di~~~S~sk~K~l~~-~~~G~  209 (424)
T 2po3_A          139 TSAVVGV---HLWGRPCAADQLRKVADEHGLRLYFDAAHALGCAV-DG-RP-AGS--LGDAEVFSFHATKAVNA-FEGGA  209 (424)
T ss_dssp             EEEEEEE---CGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEE-TT-EE-TTS--SSSEEEEECCTTSSSCC-SSCEE
T ss_pred             CcEEEEE---CCCCCcCCHHHHHHHHHHcCCEEEEECccccCCeE-CC-ee-ccc--ccCEEEEeCCCCCCccC-CCCeE
Confidence            4455554   37899999999999999999999999999855432 11 11 111  2577777776  98765 45676


Q ss_pred             EEeeCcccccccc---cC-CCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 048438           83 LWATNPEYLKNKA---TE-SKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEV  158 (239)
Q Consensus        83 l~~~~~~~l~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~  158 (239)
                      ++.++++.+....   .. .....+..  ......++..+..+.++..  .+.++++.++..++++++.+.|++++++++
T Consensus       210 ~v~~~~~l~~~l~~~~~~~~~~~~~~~--~~g~~~~~~~~~aa~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~  285 (424)
T 2po3_A          210 VVTDDADLAARIRALHNFGFDLPGGSP--AGGTNAKMSEAAAAMGLTS--LDAFPEVIDRNRRNHAAYREHLADLPGVLV  285 (424)
T ss_dssp             EEESCHHHHHHHHHHHBTTTTCTTCCT--TCCCBCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTCSCTTEEE
T ss_pred             EEeCCHHHHHHHHHHHhcCcccccccc--ccCcCCCcCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhccCCCccc
Confidence            6665344332211   10 00001000  1111123344444444432  356677888888999999999999889998


Q ss_pred             EcCCC-----eeEEEEEEc
Q 048438          159 VFPCH-----FAVVCFRVS  172 (239)
Q Consensus       159 ~~~~~-----~~iv~f~~~  172 (239)
                      ..++.     ..++.+.++
T Consensus       286 ~~~~~~~~~~~~~~~i~~~  304 (424)
T 2po3_A          286 ADHDRHGLNNHQYVIVEID  304 (424)
T ss_dssp             CCGGGGSCCCCCCEEEEEC
T ss_pred             cCCCCCCccccEEEEEEEC
Confidence            76332     246667765

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=99.14  E-value=8.5e-10  Score=96.20  Aligned_cols=193  Identities=10%  Similarity=-0.025  Sum_probs=107.5

Q ss_pred             ccEEEEEecCCCCccccc----ChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-c
Q 048438            4 IPLFLCATIGTTAITAVD----PLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-L   78 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~----pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~   78 (239)
                      .+.+|++....+++|.+.    ++++|.++|++||+++++|.+|++.......+.....++ ..|+++  +.|++++. .
T Consensus       212 ~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~~~~~~~~~-~~di~t--~sK~l~~G~~  288 (433)
T 1z7d_A          212 NVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNV-KPDVIL--LGKALSGGHY  288 (433)
T ss_dssp             TEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTC-CCSEEE--ECGGGGTTSS
T ss_pred             CEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcchhhHhcCC-CCCEEE--ECccccCCCC
Confidence            356677776666789876    799999999999999999999974211111010011233 378775  56998854 3


Q ss_pred             cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC----C
Q 048438           79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD----K  154 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~----~  154 (239)
                      ..|+++.++ +........      ....++ .+..........+++.+..+   +..++..++.+++.+.|+++    +
T Consensus       289 ~~G~v~~~~-~~~~~l~~~------~~~~t~-~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~  357 (433)
T 1z7d_A          289 PISAVLAND-DIMLVIKPG------EHGSTY-GGNPLAASICVEALNVLINE---KLCENAEKLGGPFLENLKRELKDSK  357 (433)
T ss_dssp             CCEEEEECH-HHHTTCCTT------CCCCTT-TTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred             CeEEEEECH-HHHhhhccc------cccccC-CCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            488888753 433322110      000111 11111222233344443222   34556667888888888653    3


Q ss_pred             CeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCC
Q 048438          155 RFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATL  234 (239)
Q Consensus       155 g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~  234 (239)
                      .+..+ ++..+++.+.+++...                      ....+.+.|.++|.++...    +..++|+++....
T Consensus       358 ~~~~~-~~~g~~~~i~~~~~~~----------------------~~~~~~~~l~~~Gv~v~~~----~~~~iRi~~~~~~  410 (433)
T 1z7d_A          358 IVRDV-RGKGLLCAIEFKNELV----------------------NVLDICLKLKENGLITRDV----HDKTIRLTPPLCI  410 (433)
T ss_dssp             TEEEE-EEETTEEEEEECTTTC----------------------CHHHHHHHHHHTTEECCEE----TTTEEEECCCTTC
T ss_pred             CeEEE-EeeeeEEEEEEccChh----------------------HHHHHHHHHHHCCeEEecC----CCCEEEEECCcCC
Confidence            32222 2345677787764200                      0125667777776554331    4568999876555


Q ss_pred             CCc
Q 048438          235 TEE  237 (239)
Q Consensus       235 t~~  237 (239)
                      |++
T Consensus       411 t~e  413 (433)
T 1z7d_A          411 TKE  413 (433)
T ss_dssp             CHH
T ss_pred             CHH
Confidence            543

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=99.14  E-value=1.4e-09  Score=95.99  Aligned_cols=186  Identities=15%  Similarity=0.134  Sum_probs=102.4

Q ss_pred             ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEeccccc-ccccCcccccccCCCC-CcceEEEcCccc-CCC
Q 048438            4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAG-SACIFPEFRHFIDGVE-GADSFSLNAHKW-FFA   76 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~-~~~~~~~~~~~~~~~~-~~Ds~~~~~hK~-l~~   76 (239)
                      .+.+|++....+++|.+.|    +++|.++|++||+++|+|.+|++ +... ..+.....++. .+|+++++  |+ +++
T Consensus       258 ~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g-~~~~~~~~gv~~~~Di~t~s--K~~l~G  334 (472)
T 1ohv_A          258 TVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTG-KFWAHEHWGLDDPADVMTFS--KKMMTG  334 (472)
T ss_dssp             CEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTS-SSSGGGGGCCSSCCSEEEEC--GGGSSE
T ss_pred             CEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCC-CchhccccCCCCCCCEEEEc--cccccC
Confidence            4567777777788999888    99999999999999999999974 2110 00000011221 27888766  98 441


Q ss_pred             cccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC---
Q 048438           77 TLDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD---  153 (239)
Q Consensus        77 P~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~---  153 (239)
                          |++ + ++.. .....    .   .......+......+...+++.+..+   +..++..++.+++.+.|+++   
T Consensus       335 ----G~~-~-~~~~-~~~~~----~---~~~~T~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~  397 (472)
T 1ohv_A          335 ----GFF-H-KEEF-RPNAP----Y---RIFNTWLGDPSKNLLLAEVINIIKRE---DLLSNAAHAGKVLLTGLLDLQAR  397 (472)
T ss_dssp             ----EEE-E-CGGG-SCSSS----S---SSCCSSSSCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----Ccc-C-chhh-ccccc----c---cccCccCccHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHhh
Confidence                444 3 3332 21110    0   00000011111222233444443222   34556668888888888653   


Q ss_pred             -CC-eEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEec
Q 048438          154 -KR-FEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATG  231 (239)
Q Consensus       154 -~g-~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~  231 (239)
                       ++ +.-+ .+...++.|.++.                       ......+.+.|.++|.....    .|..+||+++.
T Consensus       398 ~~~~v~~~-~~~g~~~~~~~~~-----------------------~~~~~~~~~~l~~~Gv~~~~----~g~~~iRi~~~  449 (472)
T 1ohv_A          398 YPQFISRV-RGRGTFCSFDTPD-----------------------ESIRNKLISIARNKGVMLGG----CGDKSIRFRPT  449 (472)
T ss_dssp             CTTTCEEE-EEETTEEEEECSS-----------------------HHHHHHHHHHHHHTTEECEE----ETTTEEEECCC
T ss_pred             CCCcEEee-cCCceEEEEEeCC-----------------------hhHHHHHHHHHHHCCeEEec----CCCCEEEEECC
Confidence             32 3322 2234566665532                       11233677777777765443    14568999977


Q ss_pred             CCCCCc
Q 048438          232 ATLTEE  237 (239)
Q Consensus       232 ~~~t~~  237 (239)
                      ..+|++
T Consensus       450 ~~~t~e  455 (472)
T 1ohv_A          450 LVFRDH  455 (472)
T ss_dssp             TTCCHH
T ss_pred             CCCCHH
Confidence            666654

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=99.13  E-value=2.3e-10  Score=98.15  Aligned_cols=135  Identities=15%  Similarity=0.085  Sum_probs=81.8

Q ss_pred             CCCCcccccChhHHHHHHHHhCCEEEEecccccccccCccccccc-CCCCCcceEEEcCcccCCCcccceEEEeeCcccc
Q 048438           13 GTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFI-DGVEGADSFSLNAHKWFFATLDCCCLWATNPEYL   91 (239)
Q Consensus        13 gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~-~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~l   91 (239)
                      .++.+|...|+++|.++|+ +|+++|+|+||+.+...-.  +. . .....++.+++++||+++++ ..|+++.++++..
T Consensus       135 ~~~~~G~~~~~~~i~~la~-~~~~vi~D~a~a~g~~~~~--~~-~g~~~~d~~~~S~~~~K~l~~g-~gG~~~~~~~~l~  209 (377)
T 3ju7_A          135 PYATFGSWMNLEEYEELEK-KGVPVVVDAAPGFGLMNGG--MH-YGQDFSGMIIYSFHATKPFGIG-EGGLIYSKNEEDI  209 (377)
T ss_dssp             CBCGGGBCCCCHHHHHHHH-TTCCBEEECTTCTTCEETT--EE-TTTTCSSEEEEECBTTSSSCCB-SCEEEEESCHHHH
T ss_pred             EECCCCCccCHHHHHHHHh-cCCEEEEECCCccCCeECC--Ee-ccCCCCcEEEEECCCCCcCCCC-CcEEEEECCHHHH
Confidence            4567899999999999999 9999999999987754211  11 1 11123677777789999863 4566666554332


Q ss_pred             ccccc--CCCCccCCCCceecCCCC--CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCe
Q 048438           92 KNKAT--ESKPVVDYKDWQITLSRS--FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRF  156 (239)
Q Consensus        92 ~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~  156 (239)
                      .....  ..+....+  .....+.+  ...+..+..+.  +.+.++++.++..++++++.+.|++++++
T Consensus       210 ~~~~~~~~~g~~~~~--~~~~~g~~~~~~~~~aa~~~~--~l~~l~~~~~~~~~~~~~~~~~L~~~~~~  274 (377)
T 3ju7_A          210 QRIKRMGNFGFDTNR--ECTMMGFNCKMSEYAAAIGIA--TMKKWDDKLKERTRISEWYKQLLQSNGLM  274 (377)
T ss_dssp             HHHHHHTBTTBCTTS--CBCSSCCBCCCCHHHHHHHHH--HHHTHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHhcCCCCCC--ceeeccccCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            21110  00000000  01112222  33343333333  23566788888889999999999987654

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=99.12  E-value=3.6e-10  Score=96.95  Aligned_cols=193  Identities=9%  Similarity=-0.026  Sum_probs=106.9

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHH------hCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCC
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQ------FGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFF   75 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~------~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~   75 (239)
                      +-+|+++..+|.+|.+.|   +++|+++|++      ||+++++|.+|+........... .......+.++.++||+++
T Consensus       173 ~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~-~~~~~~~~i~~~s~sK~~~  251 (398)
T 3ele_A          173 TRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPF-VTKYYDNTLVCYSYSKSLS  251 (398)
T ss_dssp             EEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCC-GGGTCSSEEEEEESTTTSS
T ss_pred             CCEEEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCC-hHhhcCCeEEEEehhhcCC
Confidence            556777788999999988   6777789999      99999999999864332111111 1111236788999999986


Q ss_pred             -CcccceEEEeeCcccccccccCCCCccCCCCceecC-CCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC
Q 048438           76 -ATLDCCCLWATNPEYLKNKATESKPVVDYKDWQITL-SRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD  153 (239)
Q Consensus        76 -~P~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~  153 (239)
                       ....+|++++.+. ........  ...  ....... ......+....+...+....   ..++..++.+++.+.|++.
T Consensus       252 ~~G~r~G~~~~~~~-~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~a~~~~l~~~~---~~~~~~~~~~~l~~~L~~~  323 (398)
T 3ele_A          252 LPGERIGYVLVPDE-VYDKAELY--AAV--CGAGRALGYVCAPSLFQKMIVKCQGATG---DINAYKENRDLLYEGLTRI  323 (398)
T ss_dssp             CTTTCCEEEECCTT-STTHHHHH--HHH--HHHHHHTTCCCSCHHHHHHHTTCTTCCC---CHHHHHHHHHHHHHHHHHH
T ss_pred             CccceeEEEEEcch-hhhHHHHH--HHH--HHHhhhccccCCCHHHHHHHHHHhcCHH---HHHHHHHHHHHHHHHHHHc
Confidence             4455788887542 22100000  000  0000000 00111122222222221111   2344557778888888876


Q ss_pred             CCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEec
Q 048438          154 KRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATG  231 (239)
Q Consensus       154 ~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~  231 (239)
                       |++++.+.....+.+.++...                        ...+.+.|.++|..+.+........++|+++.
T Consensus       324 -g~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~  376 (398)
T 3ele_A          324 -GYHCFKPDGAFYMFVKALEDD------------------------SNAFCEKAKEEDVLIVAADGFGCPGWVRISYC  376 (398)
T ss_dssp             -TCCEECCSBSSEEEEECSSSC------------------------HHHHHHHHHTTTEECEESGGGTCTTEEEEECC
T ss_pred             -CCeecCCCeeEEEEEEcCCCC------------------------HHHHHHHHHHCCEEEeCccccCCCCeEEEEec
Confidence             777765433333666665321                        12556667767765554333333468999985

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=99.12  E-value=1.9e-10  Score=100.55  Aligned_cols=194  Identities=9%  Similarity=-0.055  Sum_probs=109.7

Q ss_pred             ccEEEEEecCCCCccccc----ChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-c
Q 048438            4 IPLFLCATIGTTAITAVD----PLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-L   78 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~----pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~   78 (239)
                      .+.+|++....+++|.+.    ++++|.++|++||+++++|.+|.+.......+.....++ ..|.+  +++|++++. .
T Consensus       223 ~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~~~~~~~~~-~~Di~--t~sK~l~~G~~  299 (439)
T 2oat_A          223 NVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENV-RPDIV--LLGKALSGGLY  299 (439)
T ss_dssp             TEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTC-CCSEE--EECGGGGTTSS
T ss_pred             CEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcchhHHHhCC-CCcEE--EecccccCCCC
Confidence            356677766666789876    799999999999999999999964211111010012233 37877  556998764 3


Q ss_pred             cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 048438           79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEV  158 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~  158 (239)
                      ..|+++.++ +.........      ...++ .+..........+++.+..+   +..++..++.+++.+.|+++ ++.+
T Consensus       300 ~~G~v~~~~-~~~~~l~~~~------~~~t~-~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l-~~~~  367 (439)
T 2oat_A          300 PVSAVLCDD-DIMLTIKPGE------HGSTY-GGNPLGCRVAIAALEVLEEE---NLAENADKLGIILRNELMKL-PSDV  367 (439)
T ss_dssp             CCEEEEECH-HHHTTSCTTS------SCCSS-TTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHTTS-CTTT
T ss_pred             CeEEEEECH-HHHhccCCCC------cccCC-CcCHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHh-cCCC
Confidence            488888753 4333221100      00111 11112222333445544322   45566778999999999886 4332


Q ss_pred             Ec--CCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCC
Q 048438          159 VF--PCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTE  236 (239)
Q Consensus       159 ~~--~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~  236 (239)
                      +.  ++..+++.+.++....                     .....+.+.|.++|.....    .+..++|+++....|+
T Consensus       368 ~~~~~~~g~~~~v~l~~~~~---------------------~~~~~l~~~l~~~Gv~v~~----~~~~~iRi~~~~~~t~  422 (439)
T 2oat_A          368 VTAVRGKGLLNAIVIKETKD---------------------WDAWKVCLRLRDNGLLAKP----THGDIIRFAPPLVIKE  422 (439)
T ss_dssp             EEEEEEETTEEEEEECCCSS---------------------CCHHHHHHHHHHTTEECCB----SSSSEEEECCCTTCCH
T ss_pred             cEEEEeeeeEEEEEEecCcc---------------------HHHHHHHHHHHHCCeEEec----CCCCEEEEECccCCCH
Confidence            21  2344677777754210                     0012566777777655432    3467899997655554


Q ss_pred             c
Q 048438          237 E  237 (239)
Q Consensus       237 ~  237 (239)
                      +
T Consensus       423 e  423 (439)
T 2oat_A          423 D  423 (439)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=99.12  E-value=1.8e-10  Score=98.01  Aligned_cols=139  Identities=10%  Similarity=0.051  Sum_probs=81.4

Q ss_pred             CCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEc--CcccCCCcccceEEEeeCccc
Q 048438           13 GTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLN--AHKWFFATLDCCCLWATNPEY   90 (239)
Q Consensus        13 gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~--~hK~l~~P~g~g~l~~~~~~~   90 (239)
                      .++.+|...|+++|.++|+++|+++|+|++|+.|...-.  +  ..+. ..|++++|  +||+++++...|+++.+++..
T Consensus       129 ~~~~~G~~~~~~~i~~la~~~~~~li~D~a~~~g~~~~~--~--~~~~-~~di~~~Sf~~~K~l~~~g~gg~~~~~~~~l  203 (367)
T 3nyt_A          129 PVSLYGQCADFDAINAIASKYGIPVIEDAAQSFGASYKG--K--RSCN-LSTVACTSFFPSAPLGCYGDGGAIFTNDDEL  203 (367)
T ss_dssp             CBCGGGCCCCHHHHHHHHHHTTCCBEEECTTTTTCEETT--E--ETTS-SSSEEEEECCTTSSSCCSSCCEEEEESCHHH
T ss_pred             eeCCccChhhHHHHHHHHHHcCCEEEEECccccCCeECC--e--eccC-CCCEEEEECCCCCcCCCcCceeEEEeCCHHH
Confidence            567899999999999999999999999999987654211  1  1111 12788887  599987644456666555433


Q ss_pred             cccccc--CCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Q 048438           91 LKNKAT--ESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVV  159 (239)
Q Consensus        91 l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~  159 (239)
                      ......  ..+....+.........+...+..+.++..  .+.+++..++..++++++.+.|++. ++++.
T Consensus       204 ~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~--l~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~  271 (367)
T 3nyt_A          204 ATAIRQIARHGQDRRYHHIRVGVNSRLDTLQAAILLPK--LEIFEEEIALRQKVAAEYDLSLKQV-GIGTP  271 (367)
T ss_dssp             HHHHHHHTBTTEEETTEECSCCCBCCCCHHHHHHHHHH--HHTHHHHHHHHHHHHHHHHHHHHHT-TCCCC
T ss_pred             HHHHHHHHhcCCCcCceeeccCcCCCccHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhccC-Ceecc
Confidence            221110  000000000000001122333444333333  2345667777889999999999987 55543

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=99.11  E-value=4.2e-10  Score=96.69  Aligned_cols=193  Identities=12%  Similarity=0.052  Sum_probs=104.2

Q ss_pred             cEEEEEecCCCCccc-----ccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc
Q 048438            5 PLFLCATIGTTAITA-----VDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD   79 (239)
Q Consensus         5 p~~vv~t~gtt~~G~-----i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g   79 (239)
                      +.+|+++ ..+.+|.     .+++++|.++|++||+++|+|.+|++.............++ ..|++++  +|++++...
T Consensus       184 ~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~-~~d~~t~--sK~~~~G~r  259 (406)
T 4adb_A          184 TCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGV-TPDLLTT--AKALGGGFP  259 (406)
T ss_dssp             EEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTC-CCSEEEE--CGGGGTTSC
T ss_pred             eEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhHHHHhcCC-CCCEEEe--chhhcCCCC
Confidence            4566666 4555664     35799999999999999999999973211111111011233 2788865  999884445


Q ss_pred             ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCC-eEE
Q 048438           80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKR-FEV  158 (239)
Q Consensus        80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g-~~~  158 (239)
                      +|+++.+ ++.........      ...+. ............+++.+..   ++..++..++++++.+.|++... +.+
T Consensus       260 ~G~~~~~-~~~~~~~~~~~------~~~~~-~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~  328 (406)
T 4adb_A          260 VGALLAT-EECARVMTVGT------HGTTY-GGNPLASAVAGKVLELINT---PEMLNGVKQRHDWFVERLNTINHRYGL  328 (406)
T ss_dssp             CEEEEEC-HHHHHTCCTTS------SCCSS-TTCHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             eEEEEEc-HHHHhhhccCC------cCCCC-CCCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            8887764 33332221100      00000 0111112223334444332   45556666888888888876411 111


Q ss_pred             Ec--CCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCC
Q 048438          159 VF--PCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTE  236 (239)
Q Consensus       159 ~~--~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~  236 (239)
                      ..  +...+++.|.++....                     .....+.+.|.++|..+..    .+..++|+++....|.
T Consensus       329 ~~~~~~~g~~~~~~~~~~~~---------------------~~~~~~~~~l~~~gi~v~~----~~~~~iRi~~~~~~~~  383 (406)
T 4adb_A          329 FSEVRGLGLLIGCVLNADYA---------------------GQAKQISQEAAKAGVMVLI----AGGNVVRFAPALNVSE  383 (406)
T ss_dssp             EEEEEEETTEEEEEECTTTT---------------------TCHHHHHHHHHHTTEECEE----SSTTEEEECCCTTCCH
T ss_pred             ceEEEEEEEEEEEEEeCCcH---------------------HHHHHHHHHHHHCCcEEee----cCCCeEEEECCCCCCH
Confidence            11  1234577787765210                     0122566777777655443    3467899986655554


Q ss_pred             c
Q 048438          237 E  237 (239)
Q Consensus       237 ~  237 (239)
                      +
T Consensus       384 e  384 (406)
T 4adb_A          384 E  384 (406)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=99.11  E-value=1.4e-09  Score=94.25  Aligned_cols=186  Identities=15%  Similarity=0.013  Sum_probs=105.3

Q ss_pred             ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-c
Q 048438            4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-L   78 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~   78 (239)
                      .+.+|+++...+++|.+.|    +++|.++|++||+++|+|.+|+........+.....++ ..|.++  +.|.++++ .
T Consensus       212 ~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~-~~d~~t--~sK~~~~G~~  288 (419)
T 2eo5_A          212 EVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNT-VPDVIT--LAKALGGGIM  288 (419)
T ss_dssp             GEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTC-CCSEEE--ECGGGGTTTS
T ss_pred             CEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcchhhHHhcCC-CCCEEE--ecccccCCcc
Confidence            3456666666667898777    99999999999999999999974211111000001232 378775  45988866 7


Q ss_pred             cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 048438           79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEV  158 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~  158 (239)
                      .+|+++.++ +.+ .. ..      ....+. ....+...+...+++.+     ++..++..++.+++.+.|+++  +..
T Consensus       289 riG~~~~~~-~~~-~~-~~------~~~~t~-~~n~~~~~aa~aal~~~-----~~~~~~~~~~~~~l~~~L~~~--~~~  351 (419)
T 2eo5_A          289 PIGATIFRK-DLD-FK-PG------MHSNTF-GGNALACAIGSKVIDIV-----KDLLPHVNEIGKIFAEELQGL--ADD  351 (419)
T ss_dssp             CCEEEEEEG-GGC-CC-------------CC-CCCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHTTS--SSE
T ss_pred             ceEEEEEch-Hhh-cC-Cc------ccCCCC-CCCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHh--hhh
Confidence            788888754 333 22 10      000000 01111112222334322     225666778899999999875  222


Q ss_pred             EcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCCc
Q 048438          159 VFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTEE  237 (239)
Q Consensus       159 ~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~  237 (239)
                      + ++..+++.+.+.+.                      ..... +.+.|.++|..+...    +..++|+++....|++
T Consensus       352 ~-~~~g~~~~i~~~~~----------------------~~~~~-~~~~l~~~Gv~v~~~----~~~~lRis~~~~~t~e  402 (419)
T 2eo5_A          352 V-RGIGLAWGLEYNEK----------------------KVRDR-IIGESFKRGLLLLPA----GRSAIRVIPPLVISEE  402 (419)
T ss_dssp             E-EEETTEEEEECSCH----------------------HHHHH-HHHHHHHTTEECEEE----TTTEEEECCCTTCCHH
T ss_pred             e-EeeeEEEEEEEecC----------------------ccHHH-HHHHHHHCCCEEecC----CCCEEEEECCCCCCHH
Confidence            2 23456777766321                      11234 667777666654432    3468999865555543

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=99.10  E-value=3.2e-10  Score=98.42  Aligned_cols=192  Identities=13%  Similarity=0.043  Sum_probs=107.2

Q ss_pred             cEEEEEecCCCCccc----ccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438            5 PLFLCATIGTTAITA----VDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC   80 (239)
Q Consensus         5 p~~vv~t~gtt~~G~----i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~   80 (239)
                      +.+|+++...+..|.    .+++++|.++|++||+++++|.+|++.......+.....++ ..|++++  +|++++...+
T Consensus       202 ~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~~~~~~~~-~~diit~--sK~l~~G~~i  278 (420)
T 2pb2_A          202 TCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGV-TPDILTS--AKALGGGFPV  278 (420)
T ss_dssp             EEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTC-CCSEEEE--CGGGGTTSCC
T ss_pred             ceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHHHHHhcCC-CCCeEEe--cccccCCCce
Confidence            556666666666675    47799999999999999999999964211111010001233 3788754  7999866668


Q ss_pred             eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC----CCe
Q 048438           81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD----KRF  156 (239)
Q Consensus        81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~----~g~  156 (239)
                      |++++++ +........      ....++ .+..........+++.+..+   +..++..++.+++.+.|+++    +.+
T Consensus       279 G~~~~~~-~l~~~l~~~------~~~~t~-~~~~~~~aa~~a~L~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~  347 (420)
T 2pb2_A          279 SAMLTTQ-EIASAFHVG------SHGSTY-GGNPLACAVAGAAFDIINTP---EVLQGIHTKRQQFVQHLQAIDEQFDIF  347 (420)
T ss_dssp             EEEEECH-HHHTTCC----------CCEE-CCCHHHHHHHHHHHHHHSSH---HHHHHHHHHHHHHHHHHHHHHHHHCCE
T ss_pred             EEEEEhH-HHHHhhcCC------CcCccc-CcCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence            9888754 333322110      000111 11112223333445554433   45556668888888888764    333


Q ss_pred             EEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCC
Q 048438          157 EVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTE  236 (239)
Q Consensus       157 ~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~  236 (239)
                      ..+ ++..+++.|.++....                     .....+.+.|.++|.+...    .+..++|+++....|.
T Consensus       348 ~~~-~~~g~~~~v~~~~~~~---------------------~~~~~l~~~l~~~Gi~v~~----~~~~~iRl~~~~~~t~  401 (420)
T 2pb2_A          348 SDI-RGMGLLIGAELKPKYK---------------------GRARDFLYAGAEAGVMVLN----AGADVMRFAPSLVVEE  401 (420)
T ss_dssp             EEE-EEETTEEEEEECGGGT---------------------TCHHHHHHHHHHTTEECEE----SSTTEEEECCCTTCCH
T ss_pred             EEE-EecceEEEEEECCCch---------------------HHHHHHHHHHHHCCCEEEe----CCCCEEEEECCCCCCH
Confidence            322 2345677777753200                     0122566677776655433    2356899997544443

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=99.10  E-value=2.4e-10  Score=98.41  Aligned_cols=161  Identities=11%  Similarity=-0.022  Sum_probs=96.6

Q ss_pred             ccEEEEEecCCCCcccc---cChhHHHHHHHHhCCEEEEecccccccccCcccccc--cCCCCCcceEEEcCcccCCCc-
Q 048438            4 IPLFLCATIGTTAITAV---DPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--IDGVEGADSFSLNAHKWFFAT-   77 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i---~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~~~~~~~Ds~~~~~hK~l~~P-   77 (239)
                      .+-+|+++..+|.+|.+   +++++|+++|++||+++++|.+|+............  .......+.++.+++|.++.| 
T Consensus       167 ~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G  246 (410)
T 3e2y_A          167 KTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVTG  246 (410)
T ss_dssp             TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCGG
T ss_pred             CceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCCCC
Confidence            35677778889999998   679999999999999999999998644321111000  111112457888999998633 


Q ss_pred             ccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHH------hCHHHHHHHHHHHHHHHHHHHHHHh
Q 048438           78 LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRN------YGMENLRHFLRSHVNMARLFERLVS  151 (239)
Q Consensus        78 ~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~g~~g~~~~~~~~~~la~~l~~~l~  151 (239)
                      ..+|+++.. ++.+......    .....+.   ........+..+++.      ...+.+++..++..++.+++.+.|+
T Consensus       247 ~r~G~~~~~-~~~~~~~~~~----~~~~~~~---~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~  318 (410)
T 3e2y_A          247 WKLGWSIGP-AHLIKHLQTV----QQNSFYT---CATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLN  318 (410)
T ss_dssp             GCCEEEECC-HHHHHHHHHH----HHTTTCC---CCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEEC-HHHHHHHHHH----HHhhccC---CChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            447777653 3333222100    0000000   001111222233331      1234567777788899999999999


Q ss_pred             CCCCeEEEcCCCeeEEEEEEcC
Q 048438          152 GDKRFEVVFPCHFAVVCFRVSP  173 (239)
Q Consensus       152 ~~~g~~~~~~~~~~iv~f~~~~  173 (239)
                      +. |+++..+.....+.+.+..
T Consensus       319 ~~-g~~~~~~~~~~~~~~~~~~  339 (410)
T 3e2y_A          319 SV-GLKPIVPDGGYFIIADVSS  339 (410)
T ss_dssp             TT-TCEEEBCSBSSEEEEECGG
T ss_pred             HC-CCeecCCCccEEEEEEchh
Confidence            87 8988766555666666653

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=99.10  E-value=2.5e-10  Score=99.15  Aligned_cols=191  Identities=13%  Similarity=0.024  Sum_probs=113.6

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccc--cCCCCCcceEEEcCcccCCC-cc
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--IDGVEGADSFSLNAHKWFFA-TL   78 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~~~~~~~Ds~~~~~hK~l~~-P~   78 (239)
                      +-+|+++..+|.+|.+.|   +++|+++|++||+++++|.+|+.+...-. ....  ..+....++++.+++|.++. ..
T Consensus       199 ~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~-~~~~~~~~~~~~~~i~~~S~SK~~g~~G~  277 (432)
T 3ei9_A          199 TDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDN-PRSIFEIPGAEEVAMETASFSNYAGFTGV  277 (432)
T ss_dssp             CSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSC-CSSGGGSTTGGGTEEEEEESHHHHCTTTT
T ss_pred             CCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCC-CCChhhcCCCCCeEEEEecchhccCCccc
Confidence            345666678899999865   66777779999999999999986543211 1111  11112367889999999863 33


Q ss_pred             cceEEEeeCcccc--------cccccCCCCccCCCCceecCCCCCChHHHHHHHHHhC---HHHHHHHHHHHHHHHHHHH
Q 048438           79 DCCCLWATNPEYL--------KNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYG---MENLRHFLRSHVNMARLFE  147 (239)
Q Consensus        79 g~g~l~~~~~~~l--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g---~~g~~~~~~~~~~la~~l~  147 (239)
                      .+|++++.+ +.+        .....          ...........+...+++..+.   .+.+++..++..++.+++.
T Consensus       278 r~G~~~~~~-~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~  346 (432)
T 3ei9_A          278 RLGWTVIPK-KLLYSDGFPVAKDFNR----------IICTCFNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIII  346 (432)
T ss_dssp             CCEEEECCT-TCBCTTSCBHHHHHHH----------HHHHSCCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEECh-HHhhcchHHHHHHHHH----------HhccccCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            478777644 221        11100          0000000112233333333332   2446677788889999999


Q ss_pred             HHHhCCCCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhc-CcEEEEEEEE--CCEe
Q 048438          148 RLVSGDKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINAS-GKAYMTNVVL--GGIY  224 (239)
Q Consensus       148 ~~l~~~~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~--~g~~  224 (239)
                      +.|++. |+++..+...+.+.+.+++..                        ...+.+.|.++ |..+.+....  .|..
T Consensus       347 ~~L~~~-g~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~ll~~~gv~v~~g~~f~~~~~~  401 (432)
T 3ei9_A          347 DTFTSL-GYDVYGGKNAPYVWVHFPNQS------------------------SWDVFAEILEKTHVVTTPGSGFGPGGEG  401 (432)
T ss_dssp             HHHHHT-TCCEEECSSSSEEEEECTTSC------------------------HHHHHHHHHHHHCEECEEGGGGCGGGTT
T ss_pred             HHHHHC-CceecCCCcceEEEEECCCCC------------------------HHHHHHHHHHHCCEEEeCchHhCCCCCC
Confidence            999987 888876666777877776321                        11445555555 5544433222  2467


Q ss_pred             EEEEEecC
Q 048438          225 AIRFATGA  232 (239)
Q Consensus       225 ~lR~~~~~  232 (239)
                      ++|+++.+
T Consensus       402 ~iRis~~~  409 (432)
T 3ei9_A          402 FVRVSAFG  409 (432)
T ss_dssp             EEEEECCS
T ss_pred             EEEEEecC
Confidence            89999754

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=99.10  E-value=4.9e-09  Score=91.82  Aligned_cols=198  Identities=12%  Similarity=0.079  Sum_probs=107.0

Q ss_pred             ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc
Q 048438            4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD   79 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g   79 (239)
                      .+.+|++.-..++.|.+.|    +++|.++|++||+++++|.+|.+.......+.....++ ..|.+++  .|.+++...
T Consensus       227 ~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~-~pdi~t~--sK~l~~G~~  303 (451)
T 3oks_A          227 NLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEGI-DPDLIVT--AKGIAGGLP  303 (451)
T ss_dssp             GEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTC-CCSEEEE--CGGGGTTSS
T ss_pred             CEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCccccchhhhhcCC-CCCeeee--hhhhhCCcc
Confidence            4567777777777888877    99999999999999999999974322111111112233 3787765  499877566


Q ss_pred             ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHH---HHHHHhCHHHHHHHHHHHHHHHHHHHHHHhC----
Q 048438           80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLW---FVIRNYGMENLRHFLRSHVNMARLFERLVSG----  152 (239)
Q Consensus        80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~----  152 (239)
                      .|.++.+ ++........          ....+-....+...   .+++.+..+   +..++..++.+++++.|.+    
T Consensus       304 iG~v~~~-~~~~~~~~~~----------~~~~t~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~  369 (451)
T 3oks_A          304 LSAVTGR-AEIMDSPHVS----------GLGGTYGGNPIACAAALATIETIESE---GLVARAQQIEKIMKDRLGRLQAE  369 (451)
T ss_dssp             CEEEEEE-HHHHTCSCTT----------SBCCSSSSCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEC-HHHHhhhcCC----------CcCCCCCCCHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHhh
Confidence            7877664 3433322110          00000011223333   334433222   3344445666666665543    


Q ss_pred             CCCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecC
Q 048438          153 DKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGA  232 (239)
Q Consensus       153 ~~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~  232 (239)
                      .+.+..+ +....++.+.+......            ..+    ......+.+.|.++|.++.+..  ....++|+++..
T Consensus       370 ~~~~~~~-~~~G~~~~~~~~~~~~~------------~~~----~~~~~~~~~~l~~~Gv~v~~~~--~~~~~iRi~~~~  430 (451)
T 3oks_A          370 DDRIGDV-RGRGAMIAMELVKAGTT------------EPD----ADLTKALCAGAHAAGVIVLSCG--TYGNVVRFLPPL  430 (451)
T ss_dssp             CTTEEEE-EEETTEEEEEEBSTTSC------------CBC----HHHHHHHHHHHHHTTEECEEEC--TTSCEEEECCCT
T ss_pred             CCCeEEE-EEeeEEEEEEEecCccC------------CCC----HHHHHHHHHHHHhCCcEEecCC--CCCCEEEEECCC
Confidence            4444433 22344667776431100            001    1233467777888886655421  123689998766


Q ss_pred             CCCCc
Q 048438          233 TLTEE  237 (239)
Q Consensus       233 ~~t~~  237 (239)
                      ..|++
T Consensus       431 ~~t~e  435 (451)
T 3oks_A          431 SIGDD  435 (451)
T ss_dssp             TCCHH
T ss_pred             CCCHH
Confidence            65544

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*

Probab=99.09  E-value=2.5e-09  Score=89.72  Aligned_cols=181  Identities=10%  Similarity=0.036  Sum_probs=110.2

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-ccceEE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-LDCCCL   83 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~g~l   83 (239)
                      +-+|+++..+|.+|.+.|.+++.++++..| ++++|.+|+.....  ........ ...++++.+++|+++.| ..+|++
T Consensus       139 ~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~li~De~~~~~~~~--~~~~~~~~-~~~~i~~~s~sK~~g~~G~r~G~~  214 (335)
T 1uu1_A          139 GDVVFIPNPNNPTGHVFEREEIERILKTGA-FVALDEAYYEFHGE--SYVDFLKK-YENLAVIRTFSKAFSLAAQRVGYV  214 (335)
T ss_dssp             TEEEEEESSCTTTCCCCCHHHHHHHHHTTC-EEEEECTTHHHHCC--CCGGGGGT-CSSEEEEEESTTTTTCGGGCCEEE
T ss_pred             CCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-EEEEECcchhhcch--hHHHHhhh-CCCEEEEecchhhcCCcccCeEEE
Confidence            456666778899999999999999999989 99999999853211  10111121 13678899999997633 236888


Q ss_pred             EeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcCCC
Q 048438           84 WATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCH  163 (239)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~~~  163 (239)
                      ++ +++.+.......      ..++   ........+..+++.  .+.++++.++..++.+++.+.|++. |+++. ++.
T Consensus       215 ~~-~~~~~~~l~~~~------~~~~---~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~  280 (335)
T 1uu1_A          215 VA-SEKFIDAYNRVR------LPFN---VSYVSQMFAKVALDH--REIFEERTKFIVEERERMKSALREM-GYRIT-DSR  280 (335)
T ss_dssp             EE-CHHHHHHHHHHS------CTTC---SCHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHHHH-TCCBC-CCC
T ss_pred             Ee-CHHHHHHHHHhc------CCCC---cCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHC-CcEEc-CCC
Confidence            87 444433221100      0010   000111222223332  2356777788889999999999886 77653 555


Q ss_pred             eeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecC
Q 048438          164 FAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGA  232 (239)
Q Consensus       164 ~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~  232 (239)
                      .+.+.+.++.  .                    +  ...+.+.|.++|.....     +..++|+++..
T Consensus       281 ~~~~~~~~~~--~--------------------~--~~~~~~~l~~~gi~v~~-----~~~~iRis~~~  320 (335)
T 1uu1_A          281 GNFVFVFMEK--E--------------------E--KERLLEHLRTKNVAVRS-----FREGVRITIGK  320 (335)
T ss_dssp             SSEEEEECCT--H--------------------H--HHHHHHHHHHHTEEEEE-----ETTEEEEECCC
T ss_pred             CeEEEEECCC--C--------------------C--HHHHHHHHHHCCEEEEE-----CCCeEEEEeCC
Confidence            6677776643  0                    1  12556667666655443     33579999753

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=99.08  E-value=5.4e-10  Score=97.12  Aligned_cols=206  Identities=13%  Similarity=-0.003  Sum_probs=106.8

Q ss_pred             ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc
Q 048438            4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD   79 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g   79 (239)
                      .+.+|++....+++|.+.|    +++|.++|++||+++++|.+|++.......+.....++ ..|.+++  .|++++...
T Consensus       203 ~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~~~~~~~~~~-~~di~s~--sK~~~~G~~  279 (433)
T 1zod_A          203 NLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGV-TPDILTL--SKTLGAGLP  279 (433)
T ss_dssp             CEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTC-CCSEEEE--CHHHHTTSS
T ss_pred             CeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCchHhHHhhcCC-CCCEEEe--cccccCCCC
Confidence            4456666555567898777    99999999999999999999984221111010001233 2677655  599887666


Q ss_pred             ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC----CC
Q 048438           80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD----KR  155 (239)
Q Consensus        80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~----~g  155 (239)
                      +|+++.++ +.........  ..  ...+. .+..+.......+++.+..+   +..++..++.+++.+.|+++    +.
T Consensus       280 ig~~~~~~-~~~~~~~~~~--~~--~~~t~-~~~~~~~~a~~aal~~~~~~---~~~~~~~~~~~~l~~~l~~l~~~~~~  350 (433)
T 1zod_A          280 LAAIVTSA-AIEERAHELG--YL--FYTTH-VSDPLPAAVGLRVLDVVQRD---GLVARANVMGDRLRRGLLDLMERFDC  350 (433)
T ss_dssp             CEEEEECH-HHHHHHHHTT--CC--CCCTT-TTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             eeEEEEhH-HHHHhhccCC--CC--CCCCC-CcCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            88888753 3332221100  00  00000 01111122223344433222   34455567777777777653    44


Q ss_pred             eEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCC
Q 048438          156 FEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLT  235 (239)
Q Consensus       156 ~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t  235 (239)
                      +..+ ++..+++.+.++.....           ...+    ......+.+.|.++|.++.......+..++|+++....|
T Consensus       351 ~~~~-~~~g~~~~i~~~~~~~~-----------~~~~----~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~lRi~~~~~~t  414 (433)
T 1zod_A          351 IGDV-RGRGLLLGVEIVKDRRT-----------KEPA----DGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVS  414 (433)
T ss_dssp             EEEE-EEETTEEEEEEEEETTT-----------TEEC----TTHHHHHHHHHHHTTEECCEECCTTSCCEEEECCCTTCC
T ss_pred             eEEE-EEEEEEEEEEEecCccc-----------cCCC----hHHHHHHHHHHHHCCCeEeccCCCCCCCEEEEECCcCCC
Confidence            4332 33456677776531000           0000    011235667777777654433222223789998665555


Q ss_pred             Cc
Q 048438          236 EE  237 (239)
Q Consensus       236 ~~  237 (239)
                      ++
T Consensus       415 ~~  416 (433)
T 1zod_A          415 ED  416 (433)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=99.08  E-value=3.6e-09  Score=93.96  Aligned_cols=156  Identities=12%  Similarity=0.036  Sum_probs=88.6

Q ss_pred             CCccEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCc-cccc---ccCCC----CCcc-eEEEc
Q 048438            2 GLIPLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFP-EFRH---FIDGV----EGAD-SFSLN   69 (239)
Q Consensus         2 g~~p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~-~~~~---~~~~~----~~~D-s~~~~   69 (239)
                      |..|-+|+++..+|.||.+.+   +++|+++|++||+++++|.+|+.....-. ....   ....+    +..+ ++..|
T Consensus       235 ~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S  314 (500)
T 3tcm_A          235 GINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQS  314 (500)
T ss_dssp             TCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEE
T ss_pred             CCCceEEEEECCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEec
Confidence            446777888888999999866   66777779999999999999986543211 0110   00111    1233 44569


Q ss_pred             CcccCCCccc--ceEEEee--CcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhC------------HHHHH
Q 048438           70 AHKWFFATLD--CCCLWAT--NPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYG------------MENLR  133 (239)
Q Consensus        70 ~hK~l~~P~g--~g~l~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g------------~~g~~  133 (239)
                      ++|.++++.|  +|++.+.  +++.+......         .....+  ........+...+.            .+...
T Consensus       315 ~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~---------~~~~~~--~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~  383 (500)
T 3tcm_A          315 VSKGYYGECGKRGGYFEITGFSAPVREQIYKI---------ASVNLC--SNITGQILASLVMNPPKASDESYASYKAEKD  383 (500)
T ss_dssp             SSSTTTCCGGGCCEEEEEESCCTTHHHHHHHH---------HHTTCC--CCHHHHHHHHHHHSCCCSSSTHHHHHHHHHH
T ss_pred             CCccCCCCCccceEEEEEeCCCHHHHHHHHHH---------HhcccC--CCHHHHHHHHHHhcCccccchhHHHHHHHHH
Confidence            9999844444  5666652  33333222100         000000  01111111111111            12345


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCeEEEcCCCeeEEEE
Q 048438          134 HFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCF  169 (239)
Q Consensus       134 ~~~~~~~~la~~l~~~l~~~~g~~~~~~~~~~iv~f  169 (239)
                      ++.++..++++++.+.|++++|+++. +++.++..|
T Consensus       384 ~~~~~l~~~~~~l~~~L~~~~g~~~~-~~~g~~~~~  418 (500)
T 3tcm_A          384 GILASLARRAKALEHAFNKLEGITCN-EAEGAMYVF  418 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSTTEECC-CCCBTTEEC
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCcEEe-cCCeEEEEe
Confidence            56667778899999999998899876 555555544

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=99.08  E-value=5.3e-10  Score=95.07  Aligned_cols=186  Identities=11%  Similarity=-0.005  Sum_probs=107.2

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCC-------CCCcceEEEcCcccC
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDG-------VEGADSFSLNAHKWF   74 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~-------~~~~Ds~~~~~hK~l   74 (239)
                      +-+|+++..+|.+|.+.|   +++|+++|++||+++++|.+|+....... .......       ....+.++.++||++
T Consensus       155 ~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~s~sK~~  233 (376)
T 3ezs_A          155 VDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTP-PPSLLEACMLAGNEAFKNVLVIHSLSKRS  233 (376)
T ss_dssp             CSEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSC-CCCHHHHHHHTTCTTCTTEEEEEESTTTT
T ss_pred             CCEEEEcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCC-CCCHHHccccccccccCcEEEEecchhcc
Confidence            345666778899999877   66777779999999999999987544221 1111100       124788999999998


Q ss_pred             C-CcccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC
Q 048438           75 F-ATLDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD  153 (239)
Q Consensus        75 ~-~P~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~  153 (239)
                      + ....+|+++. +++........    .....++   ........+..+++.  .+.+++..++..++.+++.+.|+  
T Consensus       234 g~~G~r~G~~~~-~~~~~~~~~~~----~~~~~~~---~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~--  301 (376)
T 3ezs_A          234 SAPGLRSGFIAG-DSRLLEKYKAF----RAYLGYT---SANAIQKASEAAWLD--DRHAEFFRNIYANNLKLARKIFK--  301 (376)
T ss_dssp             TCGGGCCEEEEE-CHHHHHHHHHH----HTTTCCC---CCHHHHHHHHHHHHC--SHHHHHHHHHHHHHHHHHHHHST--
T ss_pred             CCccceeEEEee-CHHHHHHHHHH----HhhhcCC---CChHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHhc--
Confidence            5 3345677665 33333222110    0000000   001111222233332  23466777777888888888886  


Q ss_pred             CCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHh-cCcEEEEEEEE----CCEeEEEE
Q 048438          154 KRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINA-SGKAYMTNVVL----GGIYAIRF  228 (239)
Q Consensus       154 ~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~----~g~~~lR~  228 (239)
                       ++.  .+...+.+.+.++.                          ...+.+.|.+ .|..+.+....    .+..++|+
T Consensus       302 -~~~--~~~~~~~~~~~~~~--------------------------~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRi  352 (376)
T 3ezs_A          302 -NTL--IYPYSFYVYLPVQN--------------------------GENFAKTLYQNEGIITLPALYLGRNRIGADYVRL  352 (376)
T ss_dssp             -TCC--CCSBSSEEEEECSC--------------------------HHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEE
T ss_pred             -CCC--CCCcceEEEEECCC--------------------------HHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEE
Confidence             544  34445566666641                          1155666666 56665443222    24578999


Q ss_pred             EecC
Q 048438          229 ATGA  232 (239)
Q Consensus       229 ~~~~  232 (239)
                      ++..
T Consensus       353 s~~~  356 (376)
T 3ezs_A          353 ALVY  356 (376)
T ss_dssp             ECCS
T ss_pred             EEcC
Confidence            9764

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=99.06  E-value=2.5e-09  Score=93.58  Aligned_cols=207  Identities=11%  Similarity=0.011  Sum_probs=105.3

Q ss_pred             ccEEEEEecC-CCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-
Q 048438            4 IPLFLCATIG-TTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-   77 (239)
Q Consensus         4 ~p~~vv~t~g-tt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-   77 (239)
                      .+.+|++... .+ +|.+.|    +++|.++|++||+++++|.+|.+.......+.....++ ..|.++++  |.+++. 
T Consensus       215 ~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~~~~~~~~-~~di~t~s--K~l~~G~  290 (452)
T 3n5m_A          215 TIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGKAFGFMNYDV-KPDIITMA--KGITSAY  290 (452)
T ss_dssp             GEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTC-CCSEEEEC--GGGGTTS
T ss_pred             CEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcccccchhhhcCC-CCCEEeec--ccccCCC
Confidence            4566777766 68 999887    99999999999999999999874321111111112233 27877754  887665 


Q ss_pred             ccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHH---HHHHHhCHHHHHHHHHHHHHHHHHHHHHHh---
Q 048438           78 LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLW---FVIRNYGMENLRHFLRSHVNMARLFERLVS---  151 (239)
Q Consensus        78 ~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~g~~g~~~~~~~~~~la~~l~~~l~---  151 (239)
                      ...|+++.++ +.........    ....+....+-....+...   .+++.+..+   +..++..++.+++++.|.   
T Consensus       291 ~~ig~~~~~~-~i~~~~~~~~----~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~~~  362 (452)
T 3n5m_A          291 LPLSATAVKR-EIYEAFKGKG----EYEFFRHINTFGGNPAACALALKNLEIIENE---NLIERSAQMGSLLLEQLKEEI  362 (452)
T ss_dssp             SCCEEEEEEH-HHHGGGCSSS----TTCSCCCCCSSTTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEECH-HHHHHHhhcc----CCCCccccCCCCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHH
Confidence            5678777643 3333221100    0000000001111223333   334433222   334444556666666554   


Q ss_pred             -CCCCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEE--ECCEeEEEE
Q 048438          152 -GDKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVV--LGGIYAIRF  228 (239)
Q Consensus       152 -~~~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~--~~g~~~lR~  228 (239)
                       +.+.+..+ ++...++.+.+......          ...-+    ......+.+.|.++|.++.....  ..+..++|+
T Consensus       363 ~~~~~~~~~-~~~g~~~~i~~~~~~~~----------~~~~~----~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~~~iRi  427 (452)
T 3n5m_A          363 GEHPLVGDI-RGKGLLVGIELVNDKET----------KEPID----NDKIASVVNACKEKGLIIGRNGMTTAGYNNILTL  427 (452)
T ss_dssp             TTCTTEEEE-EESSSCEEEEEEEETTT----------TEECC----HHHHHHHHHHHHHTTEECEECTTSSTTCCCEEEE
T ss_pred             hcCCCeEEE-EEEEEEEEEEEecCCcc----------cCCCC----HHHHHHHHHHHHHCCcEEeecCcccCCCCCEEEE
Confidence             44555433 23334555555321100          00001    11223567777778766544211  112578999


Q ss_pred             EecCCCCCc
Q 048438          229 ATGATLTEE  237 (239)
Q Consensus       229 ~~~~~~t~~  237 (239)
                      ++....|++
T Consensus       428 ~~~~~~t~e  436 (452)
T 3n5m_A          428 APPLVISSE  436 (452)
T ss_dssp             CCCTTCCHH
T ss_pred             ECCCCCCHH
Confidence            877666554

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=99.06  E-value=1.6e-10  Score=101.19  Aligned_cols=162  Identities=14%  Similarity=0.026  Sum_probs=96.9

Q ss_pred             ccEEEEEecCCCCccccc---ChhHHHHHHHHhCCEEEEecccccccccCc--ccccccCCCCCcceEEEcCcccCCCc-
Q 048438            4 IPLFLCATIGTTAITAVD---PLKPLCDVAKQFGIWVHVDAAYAGSACIFP--EFRHFIDGVEGADSFSLNAHKWFFAT-   77 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~---pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~--~~~~~~~~~~~~Ds~~~~~hK~l~~P-   77 (239)
                      .+-+|+++..+|.+|.+.   ++++|+++|++||+++++|.+|+......+  .......+....|+++.++||+++.| 
T Consensus       201 ~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G  280 (447)
T 3b46_A          201 KTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFAATG  280 (447)
T ss_dssp             TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHTTCTT
T ss_pred             CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEecCchhcCCcc
Confidence            356677788889999984   699999999999999999999986433111  00000001113899999999997633 


Q ss_pred             ccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHhCCCCe
Q 048438           78 LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYG-MENLRHFLRSHVNMARLFERLVSGDKRF  156 (239)
Q Consensus        78 ~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~g~~~~~~~~~~la~~l~~~l~~~~g~  156 (239)
                      .-+|+++..+++.+......    .....++   ........+..+++... .+.+++..++..++.+++.+.|++. |+
T Consensus       281 ~riG~~~~~~~~l~~~l~~~----~~~~~~~---~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~  352 (447)
T 3b46_A          281 WRIGWVLSLNAELLSYAAKA----HTRICFA---SPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDEL-GL  352 (447)
T ss_dssp             SCCEEEECSCHHHHHHHHHH----HHHHTSS---CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH-TC
T ss_pred             hhhEEEEeCCHHHHHHHHHH----HhhccCC---CChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHC-CC
Confidence            22788876344443322100    0000000   00111122223343321 2345667777888999999999886 88


Q ss_pred             EEEcCCCeeEEEEEEcC
Q 048438          157 EVVFPCHFAVVCFRVSP  173 (239)
Q Consensus       157 ~~~~~~~~~iv~f~~~~  173 (239)
                      ++..+.....+.+.++.
T Consensus       353 ~~~~~~~g~~~~~~~~~  369 (447)
T 3b46_A          353 PYTAPEGTYFVLVDFSK  369 (447)
T ss_dssp             CEECCSBSSEEEEECTT
T ss_pred             eecCCCeeEEEEEeccc
Confidence            87755445566777754

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=99.05  E-value=2.5e-09  Score=93.36  Aligned_cols=202  Identities=14%  Similarity=0.060  Sum_probs=107.0

Q ss_pred             ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccc-cccccCcccccccCCCCCcceEEEcCcccCCCc-
Q 048438            4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYA-GSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-   77 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~-~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-   77 (239)
                      .+.+|+++...+++|.+.|    +++|.++|++||+++++|.+|+ .+... ..+.....++ ..|++++  +|++++- 
T Consensus       219 ~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g-~~~~~~~~~~-~~di~s~--sK~l~~G~  294 (449)
T 3a8u_X          219 NIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTG-SMFGADSFGV-TPDLMCI--AKQVTNGA  294 (449)
T ss_dssp             GEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTS-SSSHHHHHTC-CCSEEEE--CGGGGTTS
T ss_pred             CEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccC-cchhhhhcCC-CCCEEEE--cccccCCC
Confidence            4567777766677999888    9999999999999999999995 33211 1000001233 2787755  5998741 


Q ss_pred             ccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHH---HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 048438           78 LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLK---LWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK  154 (239)
Q Consensus        78 ~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~  154 (239)
                      ...|++++++ +.+......... .....+....+-....+.   ...+++.+..+   +..++..++.+++++.|++++
T Consensus       295 ~~~G~~~~~~-~~~~~l~~~~~~-~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l~  369 (449)
T 3a8u_X          295 IPMGAVIAST-EIYQTFMNQPTP-EYAVEFPHGYTYSAHPVACAAGLAALCLLQKE---NLVQSVAEVAPHFEKALHGIK  369 (449)
T ss_dssp             SCCEEEEEEH-HHHHHHHTCSSC-TTSCSSCCCCTTTTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHTTT
T ss_pred             CceEEEEECH-HHHHHhhccCcc-cccccccccCCCcccHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHh
Confidence            2278887753 333222110000 000000000000112222   23344433222   455667788889999998743


Q ss_pred             CeEEEc--CCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecC
Q 048438          155 RFEVVF--PCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGA  232 (239)
Q Consensus       155 g~~~~~--~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~  232 (239)
                      ++.++.  ++..+++.+.++....               .. ..  -...+.+.|.++|.++...    | .++|+++..
T Consensus       370 ~~~~~~~~~~~g~~~~i~~~~~~~---------------~~-~~--~~~~~~~~l~~~Gv~v~~~----g-~~iRis~~~  426 (449)
T 3a8u_X          370 GAKNVIDIRNFGLAGAIQIAPRDG---------------DA-IV--RPFEAGMALWKAGFYVRFG----G-DTLQFGPTF  426 (449)
T ss_dssp             TSTTEEEEEEETTEEEEEECCBTT---------------BS-SH--HHHHHHHHHHHHTEECEEE----T-TEEEECCCT
T ss_pred             cCCCeEEEeeeEEEEEEEEecCcc---------------cc-cc--cHHHHHHHHHHCCcEEecC----C-CEEEEECCC
Confidence            332211  2345678888764210               00 00  0114666676666554432    3 689999765


Q ss_pred             CCCCc
Q 048438          233 TLTEE  237 (239)
Q Consensus       233 ~~t~~  237 (239)
                      ..|++
T Consensus       427 ~~t~~  431 (449)
T 3a8u_X          427 NSKPQ  431 (449)
T ss_dssp             TCCHH
T ss_pred             cCCHH
Confidence            55543

>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}

Probab=99.05  E-value=1.2e-09  Score=94.54  Aligned_cols=164  Identities=11%  Similarity=0.073  Sum_probs=102.7

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL   83 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l   83 (239)
                      +|-+|  .+|.+..-...|++++.+||++.|++|++|.||-+|.+....+..-+.   .||+++.+.||.|.+|.| |++
T Consensus       203 kPklI--i~G~SaY~r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~~---~ADvVTtTTHKTLrGPrG-G~I  276 (490)
T 3ou5_A          203 RPRLI--IAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK---HADIVTTTTHKTLRGARS-GLI  276 (490)
T ss_dssp             CCSEE--EECCSSCCSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGG---TCSEEEEESSSTTCSCSC-EEE
T ss_pred             CCCeE--EECCccCccccCHHHHHHHHhhcccEEEechhhhhhhhcccccCCccc---cceEEeccccccccCCCc-eEE
Confidence            34444  356667777889999999999999999999999888765543332233   499999999999999996 566


Q ss_pred             EeeCcc-cccccccCCCCccCCC---C----ceecCCCCCC-hHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 048438           84 WATNPE-YLKNKATESKPVVDYK---D----WQITLSRSFR-SLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK  154 (239)
Q Consensus        84 ~~~~~~-~l~~~~~~~~~~~~~~---~----~~~~~~~~~~-~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~  154 (239)
                      ++++.. ....... .....++.   +    -..+++--.. ..+...+++..-...++++.++..++|+.|.+.|.+. 
T Consensus       277 l~~~~~~~~~~k~~-~~~~~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~-  354 (490)
T 3ou5_A          277 FYRKGVKAVDPKTG-REIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER-  354 (490)
T ss_dssp             EEECSEEEECC--C-CEEECCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             Eecccccccccccc-chhHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhC-
Confidence            665421 0000000 00000000   0    0112222211 2233333433223456788888999999999999986 


Q ss_pred             CeEEEcC-CCeeEEEEEEcCCC
Q 048438          155 RFEVVFP-CHFAVVCFRVSPLP  175 (239)
Q Consensus       155 g~~~~~~-~~~~iv~f~~~~~~  175 (239)
                      |++++.. .+..++.+.+.+.+
T Consensus       355 G~~vvsGgTdnHlvLvDl~~~g  376 (490)
T 3ou5_A          355 GYSLVSGGTDNHLVLVDLRPKG  376 (490)
T ss_dssp             TCEEGGGSCSSSEEEEECGGGT
T ss_pred             CCeeecCCCCceEEEEeccccC
Confidence            9999863 45667777776543

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=99.03  E-value=6.2e-09  Score=90.30  Aligned_cols=194  Identities=11%  Similarity=0.087  Sum_probs=108.1

Q ss_pred             cEEEEE-ecCCCCcccccChh---HHHHHHHHhCCEEEEecccccccccCc---ccccccCCCCCcceEEEcCcccCCCc
Q 048438            5 PLFLCA-TIGTTAITAVDPLK---PLCDVAKQFGIWVHVDAAYAGSACIFP---EFRHFIDGVEGADSFSLNAHKWFFAT   77 (239)
Q Consensus         5 p~~vv~-t~gtt~~G~i~pl~---~i~~i~~~~gi~lhvD~A~~~~~~~~~---~~~~~~~~~~~~Ds~~~~~hK~l~~P   77 (239)
                      +-+|++ ...+|.||.+.|.+   +|+++|++||+++++|.+|+.......   .... +.. ...++++.+++|+++ |
T Consensus       191 ~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~De~~~~~~~~g~~~~~~~~-~~~-~~~~i~~~s~SK~~~-~  267 (425)
T 2r2n_A          191 PKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYYFLQFNKFRVPTFLS-MDV-DGRVIRADSFSKIIS-S  267 (425)
T ss_dssp             CSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSSCCCCTGG-GCT-TSCEEEEEESTTTTC-S
T ss_pred             ceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCcccccCCCCCCCCccc-cCC-CCCEEEEccchhhcc-C
Confidence            445544 57789999998866   999999999999999999985432111   1111 111 125688899999986 4


Q ss_pred             cc--ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCH----HHHHHHHHHHHHHHHHHHHHHh
Q 048438           78 LD--CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGM----ENLRHFLRSHVNMARLFERLVS  151 (239)
Q Consensus        78 ~g--~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~----~g~~~~~~~~~~la~~l~~~l~  151 (239)
                       |  +|+++..+ +.+......    .....++   ...+....+..+++.++.    +.+++..++..+..+++.+.|+
T Consensus       268 -GlRiG~~~~~~-~l~~~l~~~----~~~~~~~---~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~  338 (425)
T 2r2n_A          268 -GLRIGFLTGPK-PLIERVILH----IQVSTLH---PSTFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAAD  338 (425)
T ss_dssp             -TTCCEEEEEEH-HHHHHHHHH----HHTTTCS---SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -ccceEEEecCH-HHHHHHHHH----HHHhcCC---CCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             4  68887743 333222100    0000000   001111222233443222    2344455566677888888887


Q ss_pred             C-CCCeE-EEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEEC-----CEe
Q 048438          152 G-DKRFE-VVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLG-----GIY  224 (239)
Q Consensus       152 ~-~~g~~-~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~-----g~~  224 (239)
                      + .+++. +..+...+.+.+.++....               .    .+   .+.+.|.+.|..+.......     +..
T Consensus       339 ~~~~~~~~~~~p~~g~~~~~~~~~~~~---------------~----~~---~~~~~l~~~gv~v~pg~~f~~~~~~~~~  396 (425)
T 2r2n_A          339 KWLTGLAEWHVPAAGMFLWIKVKGIND---------------V----KE---LIEEKAVKMGVLMLPGNAFYVDSSAPSP  396 (425)
T ss_dssp             HHCSSSEEECCCSBSSEEEEEETTCSC---------------C----HH---HHHTHHHHTTEECEEGGGGSSSTTSCCC
T ss_pred             HHCCCCeEEeCCCceEEEEEEeCCCCC---------------H----HH---HHHHHHHHCCcEEechhhhcCCCCCCCC
Confidence            7 57764 4444455667777764210               0    11   23455666666555433221     347


Q ss_pred             EEEEEecC
Q 048438          225 AIRFATGA  232 (239)
Q Consensus       225 ~lR~~~~~  232 (239)
                      ++|+++..
T Consensus       397 ~iRis~~~  404 (425)
T 2r2n_A          397 YLRASFSS  404 (425)
T ss_dssp             EEEEECSS
T ss_pred             EEEEEeCC
Confidence            89999773

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*

Probab=99.03  E-value=8.6e-10  Score=94.89  Aligned_cols=155  Identities=12%  Similarity=-0.068  Sum_probs=90.2

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCC---CcceEEEcCcccCCCc-
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVE---GADSFSLNAHKWFFAT-   77 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~---~~Ds~~~~~hK~l~~P-   77 (239)
                      +-+|+++..+|.+|.+.|   +++|+++|+++|+++++|.+|+.....- .....+..++   ..++++.+++|+++.| 
T Consensus       164 ~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G  242 (400)
T 3asa_A          164 IDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDP-SLPKSIFEIPDARFCAIEINSFSKPLGFAG  242 (400)
T ss_dssp             CSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCT-TSCSSGGGSTTGGGTEEEEEECCGGGTTTT
T ss_pred             ccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCC-CCCCchhhCCCCCCceEEEecchhhcCCcc
Confidence            445666678899999988   5678899999999999999998432211 0000011221   1457889999997633 


Q ss_pred             ccceEEEeeCcccc-------cccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Q 048438           78 LDCCCLWATNPEYL-------KNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERL  149 (239)
Q Consensus        78 ~g~g~l~~~~~~~l-------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~  149 (239)
                      ..+|++++.+ +..       ......       .......+.. .....+..+++..   .+++..++..++.+++.+.
T Consensus       243 lriG~~~~~~-~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~l~~~  311 (400)
T 3asa_A          243 IRLGWTVIPQ-ELTYADGHFVIQDWER-------FLSTTFNGASIPAQEAGVAGLSIL---PQLEAIHYYRENSDLLRKA  311 (400)
T ss_dssp             CCCEEEECCT-TCBCTTSCBHHHHHHH-------HHHHHCCCCCHHHHHHHHHHHHHT---TTCHHHHHHHHHHHHHHHH
T ss_pred             hheeEEeeCh-hhccchhhhHHHHHHH-------HhccCccCCChHHHHHHHHHhCcH---HHHHHHHHHHHHHHHHHHH
Confidence            2368887643 331       111000       0000000111 1112222233321   3455666677888999999


Q ss_pred             HhCCCCeEEEcCCCeeEEEEE-Ec
Q 048438          150 VSGDKRFEVVFPCHFAVVCFR-VS  172 (239)
Q Consensus       150 l~~~~g~~~~~~~~~~iv~f~-~~  172 (239)
                      |++. |+++..+...+.+.+. ++
T Consensus       312 L~~~-g~~~~~~~~~~~~~~~~~~  334 (400)
T 3asa_A          312 LLAT-GFEVFGGEHAPYLWVKPTQ  334 (400)
T ss_dssp             HHHT-TCEEEECSSSSEEEEECCC
T ss_pred             HHHC-CCeeeCCCCceEEEEeccC
Confidence            9886 8888765556777777 54

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=99.03  E-value=6.5e-09  Score=91.14  Aligned_cols=198  Identities=11%  Similarity=-0.006  Sum_probs=105.7

Q ss_pred             ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc
Q 048438            4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD   79 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g   79 (239)
                      .+.+|++.-...+.|.+.|    +++|.++|++||+++++|.+|.+.......+.....++ ..|.++++  |.+++...
T Consensus       225 ~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~a~~~~~~-~pdi~t~s--K~~~~G~~  301 (453)
T 4ffc_A          225 SLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWFASEHEGI-VPDIVTMA--KGIAGGMP  301 (453)
T ss_dssp             GEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTC-CCSEEEEC--GGGGTTSS
T ss_pred             CEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccccchhhhcCC-CcchHhhh--hhhcCCcC
Confidence            4567777776677788877    99999999999999999999875321111111011233 27877765  99876556


Q ss_pred             ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHH---HHHHHhCHHHHHHHHHHHHHHHHHHHHHHh----C
Q 048438           80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLW---FVIRNYGMENLRHFLRSHVNMARLFERLVS----G  152 (239)
Q Consensus        80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~g~~g~~~~~~~~~~la~~l~~~l~----~  152 (239)
                      .|.++.+ ++.+......          ....+-....+...   .+++.+..+   +..++..++.+++++.|.    +
T Consensus       302 ~G~~~~~-~~i~~~~~~~----------~~~~t~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~  367 (453)
T 4ffc_A          302 LSAVTGR-AELMDAVYAG----------GLGGTYGGNPVTCAAAVAALGVMREL---DLPARARAIEASVTSRLSALAEE  367 (453)
T ss_dssp             CEEEEEE-HHHHTTSCTT----------SSCCSSSSCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEC-HHHHhhhccc----------CcCCCCCcCHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHHHHHHhh
Confidence            7877664 3433332210          00000011223333   334433222   334444455556555554    3


Q ss_pred             CCCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecC
Q 048438          153 DKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGA  232 (239)
Q Consensus       153 ~~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~  232 (239)
                      .+.+..+ +...+++.+.+......            ..+    ......+.+.|.++|.++... .. ...++|+++..
T Consensus       368 ~~~~~~~-~~~g~~~~~~~~~~~~~------------~~~----~~~~~~~~~~l~~~Gv~v~~~-~~-~~~~iRi~~~~  428 (453)
T 4ffc_A          368 VDIIGEV-RGRGAMLAIEIVKPGTL------------EPD----AALTKSIAAEALSQGVLILTC-GT-FGNVIRLLPPL  428 (453)
T ss_dssp             CSSEEEE-EEETTEEEEEEBCTTSC------------CBC----HHHHHHHHHHHHHTTEECCEE-CT-TSCEEEECCCT
T ss_pred             CCCeEEE-EeeceEEEEEEecCccc------------CCC----HHHHHHHHHHHHhCCCEEecC-CC-CCCEEEEECCC
Confidence            4554433 22345666766431100            001    223446777787787665442 11 23688999766


Q ss_pred             CCCCc
Q 048438          233 TLTEE  237 (239)
Q Consensus       233 ~~t~~  237 (239)
                      ..|.+
T Consensus       429 ~~t~e  433 (453)
T 4ffc_A          429 VIGDD  433 (453)
T ss_dssp             TCCHH
T ss_pred             CCCHH
Confidence            65554

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=99.02  E-value=8.5e-09  Score=90.93  Aligned_cols=205  Identities=9%  Similarity=-0.029  Sum_probs=110.4

Q ss_pred             ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-c
Q 048438            4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-L   78 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~   78 (239)
                      .+.+|++.-..++.|.+.|    +++|.++|++||+++++|.+|.+.......+.....++ ..|.++++  |.+++. .
T Consensus       223 ~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~a~~~~~v-~pdi~t~s--K~l~gg~~  299 (472)
T 3hmu_A          223 RVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGNWFGTQTMGI-RPHIMTIA--KGLSSGYA  299 (472)
T ss_dssp             GEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTC-CCSEEEEC--GGGTTTSS
T ss_pred             CEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccCccchhHHhCC-CCceeeec--hhhhcCCc
Confidence            4567777777788899888    99999999999999999999975322111111012233 38888765  998765 3


Q ss_pred             cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHH-HHHHHHHHHHhCC---C
Q 048438           79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHV-NMARLFERLVSGD---K  154 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~-~la~~l~~~l~~~---~  154 (239)
                      ..|+++.++ +........   .+. ...++ .+.+....+..++++.+..   ++..++.. ++.+++++.|+++   +
T Consensus       300 plG~v~~~~-~i~~~~~~~---~~~-~~~t~-~~np~a~aAa~aaL~~~~~---~~~~~~~~~~~~~~l~~~L~~l~~~~  370 (472)
T 3hmu_A          300 PIGGSIVCD-EVAHVIGKD---EFN-HGYTY-SGHPVAAAVALENLRILEE---ENILDHVRNVAAPYLKEKWEALTDHP  370 (472)
T ss_dssp             CCEEEEEEH-HHHHHHTTS---CBC-CCCTT-TTCHHHHHHHHHHHHHHHH---TTHHHHHHHTHHHHHHHHHHGGGGST
T ss_pred             ceEEEEECH-HHHHhcccC---Ccc-ccCCC-CCCHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            567777643 332222100   000 00000 1111112222233443322   34455566 6677777777553   3


Q ss_pred             CeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCC
Q 048438          155 RFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATL  234 (239)
Q Consensus       155 g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~  234 (239)
                      .+..+ .+..+++.|.+......       ..+ ....   .......+.+.|.++|.++...    | .++|+++..-.
T Consensus       371 ~v~~v-r~~G~~~~i~~~~~~~~-------~~~-~~~~---~~~~~~~~~~~l~~~Gv~v~~~----g-~~iRi~p~~~~  433 (472)
T 3hmu_A          371 LVGEA-KIVGMMASIALTPNKAS-------RAK-FASE---PGTIGYICRERCFANNLIMRHV----G-DRMIISPPLVI  433 (472)
T ss_dssp             TEEEE-EEETTEEEEEECSCGGG-------TCC-BSSC---TTHHHHHHHHHHHHTTBCCEEE----T-TEEEECCCTTC
T ss_pred             CeEEE-EecCceEEEEEecCccc-------ccc-ccch---hHHHHHHHHHHHHHCCcEEEec----C-CEEEEECCCCC
Confidence            44333 23445777777542100       000 0000   0123346777788888765542    3 78999966555


Q ss_pred             CCc
Q 048438          235 TEE  237 (239)
Q Consensus       235 t~~  237 (239)
                      |++
T Consensus       434 t~e  436 (472)
T 3hmu_A          434 TPA  436 (472)
T ss_dssp             CHH
T ss_pred             CHH
Confidence            544

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=98.57  E-value=3.3e-11  Score=103.49  Aligned_cols=199  Identities=11%  Similarity=-0.025  Sum_probs=112.4

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccc---cCCCCCcceEEEcCcccCCCc-
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF---IDGVEGADSFSLNAHKWFFAT-   77 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~---~~~~~~~Ds~~~~~hK~l~~P-   77 (239)
                      |-+|+++..+|.+|.+.|   +++|+++|++||+++++|.+|+............   ..+....+.++.+++|+++.| 
T Consensus       165 ~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G  244 (392)
T 3b1d_A          165 VKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAG  244 (392)
Confidence            445666777889999876   8999999999999999999998754321111010   111012567888999998633 


Q ss_pred             ccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhC-CCCe
Q 048438           78 LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSG-DKRF  156 (239)
Q Consensus        78 ~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~-~~g~  156 (239)
                      ..+|+++..+++.........      ..+.......+.......+++. +.+.+++..++..++.+++.+.|++ ++++
T Consensus       245 ~r~G~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  317 (392)
T 3b1d_A          245 TKNSYAIIENPTLCAQFKHQQ------LVNNHHEVSSLGYIATETAYRY-GKPWLVALKAVLEENIQFAVEYFAQEAPRL  317 (392)
Confidence            346777765443443322100      0011101111111222223332 2344566666777888889888887 6788


Q ss_pred             EEEcCCCeeEEE-EEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHH-hcCcEEEEEEEE--CCEeEEEEEecC
Q 048438          157 EVVFPCHFAVVC-FRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESIN-ASGKAYMTNVVL--GGIYAIRFATGA  232 (239)
Q Consensus       157 ~~~~~~~~~iv~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~--~g~~~lR~~~~~  232 (239)
                      ++. ++..+++. +.++..+                      .-...+.+.|. ++|..+......  .+..++|+++..
T Consensus       318 ~~~-~~~~~~~~~i~~~~~~----------------------~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~  374 (392)
T 3b1d_A          318 KVM-KPQGTYLIWLDFSDYG----------------------LTDDALFTLLHDQAKVILNRGSDYGSEGELHARLNIAA  374 (392)
Confidence            765 44455443 5554311                      01125566665 456555443322  246789999776


Q ss_pred             C
Q 048438          233 T  233 (239)
Q Consensus       233 ~  233 (239)
                      +
T Consensus       375 ~  375 (392)
T 3b1d_A          375 P  375 (392)
Confidence            3

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=99.00  E-value=8.5e-09  Score=91.02  Aligned_cols=205  Identities=12%  Similarity=-0.013  Sum_probs=110.3

Q ss_pred             ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccc-cCCCCCcceEEEcCcccCCCc-
Q 048438            4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF-IDGVEGADSFSLNAHKWFFAT-   77 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~-~~~~~~~Ds~~~~~hK~l~~P-   77 (239)
                      .+.+|++....++.|.+.|    +++|.++|++||+++++|.+|++.......+... ..++. .|.++++  |.+++. 
T Consensus       221 ~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~G~~~~~~~~~~v~-pdi~t~s--K~l~~G~  297 (476)
T 3i5t_A          221 TIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVV-PDIITFA--KGVTSGY  297 (476)
T ss_dssp             GEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHTTCCC-CSEEEEC--GGGGTTS
T ss_pred             CEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccccCceeeecccCCC-cchhhhh--hhhcCCC
Confidence            4567777777788888776    9999999999999999999997532211111111 22333 7888765  998765 


Q ss_pred             ccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHH---HHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC-
Q 048438           78 LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLW---FVIRNYGMENLRHFLRSHVNMARLFERLVSGD-  153 (239)
Q Consensus        78 ~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~-  153 (239)
                      ...|+++.+ ++...........   ...+....+-....+...   ++++.+..   ++..++..++.+++++.|+++ 
T Consensus       298 ~plg~v~~~-~~i~~~~~~~~~~---~~~~~~~~t~~~np~a~aAa~aaL~~~~~---~~~~~~~~~~~~~l~~~L~~l~  370 (476)
T 3i5t_A          298 VPLGGLAIS-EAVLARISGENAK---GSWFTNGYTYSNQPVACAAALANIELMER---EGIVDQAREMADYFAAALASLR  370 (476)
T ss_dssp             SCCEEEEEC-HHHHHTTSGGGCT---TCEECCCCTTTTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHTTT
T ss_pred             cCeEEEEEC-HHHHHHHhcCCcc---cccccccCCCCcCHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHh
Confidence            456777764 3332222110000   000000001111223333   34443322   345556668888888888764 


Q ss_pred             --CCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEec
Q 048438          154 --KRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATG  231 (239)
Q Consensus       154 --~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~  231 (239)
                        +.+..+ ++...++.+.+......            ..+..........+.+.|.++|.++.+    .| .++|+++.
T Consensus       371 ~~~~v~~v-~~~G~~~~i~~~~~~~~------------~~~~~~~~~~~~~~~~~l~~~Gv~v~~----~g-~~iRi~p~  432 (476)
T 3i5t_A          371 DLPGVAET-RSVGLVGCVQCLLDPTR------------ADGTAEDKAFTLKIDERCFELGLIVRP----LG-DLCVISPP  432 (476)
T ss_dssp             TSTTEEEE-EEETTEEEEEECCC-----------------CCHHHHHHHHHHHHHHHHTTEECEE----ET-TEEEECCC
T ss_pred             cCCCeEEE-EecCceeEEEEecCccc------------cccccchhHHHHHHHHHHHHCCCEEEe----cC-CEEEEECC
Confidence              333332 23345666776542100            000011122445777888888766544    14 78999865


Q ss_pred             CCCCC
Q 048438          232 ATLTE  236 (239)
Q Consensus       232 ~~~t~  236 (239)
                      .-.|.
T Consensus       433 l~~t~  437 (476)
T 3i5t_A          433 LIISR  437 (476)
T ss_dssp             TTCCH
T ss_pred             CCCCH
Confidence            54444

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=99.00  E-value=8.2e-09  Score=89.57  Aligned_cols=205  Identities=12%  Similarity=0.006  Sum_probs=101.8

Q ss_pred             ccEEEEEecCCC-CcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccC-CCCCcceEEEcCcccCCCc
Q 048438            4 IPLFLCATIGTT-AITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFID-GVEGADSFSLNAHKWFFAT   77 (239)
Q Consensus         4 ~p~~vv~t~gtt-~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~-~~~~~Ds~~~~~hK~l~~P   77 (239)
                      .+.+|++....+ ++|.+.|    +++|.++|++||+++++|.+|++.......+..... ++ ..|.++++  |.+++.
T Consensus       190 ~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~~~~~~~~~~~-~~di~t~s--K~l~~G  266 (430)
T 3i4j_A          190 TVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPLALSRWSGV-TPDIAVLG--KGLAAG  266 (430)
T ss_dssp             GEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTTC-CCSEEEEC--GGGTTT
T ss_pred             CEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhhhhcCC-CCcEEEEc--ccccCC
Confidence            456677777677 8898888    999999999999999999998743211111110112 33 26777654  998753


Q ss_pred             -ccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHH---HHHHHhCHHHHHHHHHHHHHHHHHHHHHHh--
Q 048438           78 -LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLW---FVIRNYGMENLRHFLRSHVNMARLFERLVS--  151 (239)
Q Consensus        78 -~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~g~~g~~~~~~~~~~la~~l~~~l~--  151 (239)
                       ...|.++. +++.......... .     +....+-....+...   .+++.+..+   +..++..++.+++++.|.  
T Consensus       267 ~~r~G~~~~-~~~i~~~~~~~~~-~-----~~~~~t~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~~~~~l~~~  336 (430)
T 3i4j_A          267 YAPLAGLLA-APQVYETVMGGSG-A-----FMHGFTYAGHPVSVAAGLSVLDIVERE---DLTGAAKERGAQLLAGLQAL  336 (430)
T ss_dssp             SSCCEEEEE-CHHHHHHHHHTTC-B-----CCCCCTTTTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHH
T ss_pred             ccccEEEEE-CHHHHHHHhccCC-c-----ccccCCCCCCHHHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHHHHHHH
Confidence             33677776 3333322211000 0     000000011223333   334433222   333444455555555544  


Q ss_pred             --CCCCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHH-HHHHHHHHHHHHhcCcEEEEE---EEECCEeE
Q 048438          152 --GDKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQI-NEFNRELLESINASGKAYMTN---VVLGGIYA  225 (239)
Q Consensus       152 --~~~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~g~~~~~~---~~~~g~~~  225 (239)
                        +.+++..+ ++..+++.+.+.+...              .. ... ......+.+.|.++|.++...   ..-.+..+
T Consensus       337 ~~~~~~~~~~-~~~g~~~~~~~~~~~~--------------~~-~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~~  400 (430)
T 3i4j_A          337 QARFPQMMQV-RGTGLLLGVVLGDLAT--------------GQ-AFETPGIASRIGAAALKRGLITYPGSGAEPNGRGDH  400 (430)
T ss_dssp             HHHCTTEEEE-EEETTEEEEEEC---------------------------CHHHHHHHHHHTTEECC-----------CE
T ss_pred             HHhCCCeEEE-EEEEEEEEEEeccccc--------------cC-CCccHHHHHHHHHHHHhCCCEEEecccccCCCCCCE
Confidence              45666544 3345567777653210              00 000 011246777787787664432   11123578


Q ss_pred             EEEEecCCCCCc
Q 048438          226 IRFATGATLTEE  237 (239)
Q Consensus       226 lR~~~~~~~t~~  237 (239)
                      +|+++....|.+
T Consensus       401 iRi~~~~~~t~e  412 (430)
T 3i4j_A          401 LLLGPPLSITAA  412 (430)
T ss_dssp             EEECCCTTCCHH
T ss_pred             EEEECCCCCCHH
Confidence            999976555543

>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*

Probab=99.00  E-value=2.7e-10  Score=104.75  Aligned_cols=146  Identities=12%  Similarity=0.056  Sum_probs=91.0

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCccccc--ccCCCCCcceE---EEcCcccCCCccc
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRH--FIDGVEGADSF---SLNAHKWFFATLD   79 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~--~~~~~~~~Ds~---~~~~hK~l~~P~g   79 (239)
                      |.+|+++.. |.+|.+.|+++|+++|+++  .++||+||+++....+..+.  .+..-..+|.+   +.|+||+|++|.+
T Consensus       298 p~~vivt~p-n~~G~v~dl~~I~ela~~~--~livDEAH~~~~~f~~~~~~~~al~~g~~aD~vii~~~S~hKtL~gltq  374 (715)
T 3n75_A          298 PVHAVITNS-TYDGLLYNTDFIKKTLDVK--SIHFDSAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQ  374 (715)
T ss_dssp             CSEEEEESS-CTTSEEECHHHHHHHCCCS--EEEEECTTCTTGGGSGGGTTSSTTSSSCCTTCEEEEEECHHHHSSCCTT
T ss_pred             ceEEEEECC-CCCCccCCHHHHHHHhCcC--cEEEccccccccccCCccccccccccCcCCCEEEEEEecccccccCCCC
Confidence            557778887 8999999999999999876  38999999987533332221  01110126776   8999999999989


Q ss_pred             ceEEEeeCcccccccccCCCCccCCCCceecCCCC-CC-hHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCC--
Q 048438           80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRS-FR-SLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKR--  155 (239)
Q Consensus        80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g--  155 (239)
                      +|++++++.........    ..    ..+..+.+ +. ..++-.+++.+....-+++.++..++++++++.|+++++  
T Consensus       375 gs~i~v~~~i~~~~~~~----~~----~~~~STSpsy~~~AsldaA~~~~~~~~g~~~~~~l~~~a~~~r~~L~~i~~~~  446 (715)
T 3n75_A          375 ASMIHVKGDVNEETFNE----AY----MMHTTTSPHYGIVASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTES  446 (715)
T ss_dssp             CEEEEEESCCCHHHHHH----HH----HHTSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             eeEEEeCchhhHHHHHH----HH----HhhcCCCchHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence            99999865310000000    00    00111111 11 123333455554322245778899999999999988753  


Q ss_pred             ----eEEEcC
Q 048438          156 ----FEVVFP  161 (239)
Q Consensus       156 ----~~~~~~  161 (239)
                          ++++.+
T Consensus       447 ~~~~~~~~~~  456 (715)
T 3n75_A          447 DGWFFDVWQP  456 (715)
T ss_dssp             SSCCCEESSC
T ss_pred             ccceeeccCc
Confidence                566654

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=98.99  E-value=2.7e-09  Score=92.31  Aligned_cols=195  Identities=10%  Similarity=0.013  Sum_probs=104.5

Q ss_pred             ccEEEEEe-cCCCCcccccChh---HHHHHH-HHhCCEEEEecccccccccC-c--cccccc-----CCCCCcceEEEcC
Q 048438            4 IPLFLCAT-IGTTAITAVDPLK---PLCDVA-KQFGIWVHVDAAYAGSACIF-P--EFRHFI-----DGVEGADSFSLNA   70 (239)
Q Consensus         4 ~p~~vv~t-~gtt~~G~i~pl~---~i~~i~-~~~gi~lhvD~A~~~~~~~~-~--~~~~~~-----~~~~~~Ds~~~~~   70 (239)
                      .+-+|+++ ..+|.+|.+.|.+   +|+++| ++||+++++|.+|+...+.. .  ......     .+....+.++.++
T Consensus       172 ~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~  251 (423)
T 3ez1_A          172 SVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFAST  251 (423)
T ss_dssp             TEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEES
T ss_pred             CceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEEeCc
Confidence            34455444 6789999998887   888888 89999999999998432211 1  000000     0112367889999


Q ss_pred             cccCCCcccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHH---HHHH-hC--HHHHHHHHH----HHH
Q 048438           71 HKWFFATLDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWF---VIRN-YG--MENLRHFLR----SHV  140 (239)
Q Consensus        71 hK~l~~P~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~-~g--~~g~~~~~~----~~~  140 (239)
                      +|+++...++|+++.. ++.+.....          .....+.....+..+.   +++. .+  .+.+++..+    +..
T Consensus       252 sK~~~~G~r~G~~~~~-~~~~~~~~~----------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~  320 (423)
T 3ez1_A          252 SKITFAGAGLGFVASS-EDNIRWLSK----------YLGAQSIGPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFR  320 (423)
T ss_dssp             TTTSCSSSSCEEEEEC-HHHHHHHHH----------HHHHSCSCCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHH
T ss_pred             hhhccCCcceEEEEeC-HHHHHHHHH----------HHhhhccCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence            9986666778877763 333222110          0000001111222222   2332 11  112222222    233


Q ss_pred             HHHHHHHHHHhCCC-CeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEE-EE
Q 048438          141 NMARLFERLVSGDK-RFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMT-NV  218 (239)
Q Consensus       141 ~la~~l~~~l~~~~-g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~-~~  218 (239)
                      .+.+.+.+.|.+++ ++++..+...+.+.+.++...                        ...+.+.|.++|..+.+ ..
T Consensus       321 ~l~~~l~~~l~~~~~~~~~~~p~~g~~~~~~~~~~~------------------------~~~~~~~l~~~gv~v~~~g~  376 (423)
T 3ez1_A          321 AVDEVLRAELGEGGEYATWTLPKGGYFISLDTAEPV------------------------ADRVVKLAEAAGVSLTPAGA  376 (423)
T ss_dssp             HHHHHHHHHHTTTTSSEEECCCSBSSCEEEEESSSC------------------------HHHHHHHHHHTTEECCCTTT
T ss_pred             HHHHHHHHhcCcCCCceEEeCCCccEEEEEECCCCc------------------------HHHHHHHHHHCCcEEecCcc
Confidence            34455555565554 477765656677888886521                        12455566666655443 11


Q ss_pred             EE-----CCEeEEEEEecCC
Q 048438          219 VL-----GGIYAIRFATGAT  233 (239)
Q Consensus       219 ~~-----~g~~~lR~~~~~~  233 (239)
                      ..     .+..++|+++...
T Consensus       377 ~~~~~~~~~~~~iRis~~~~  396 (423)
T 3ez1_A          377 TYPAGQDPHNRNLRLAPTRP  396 (423)
T ss_dssp             TSSTTCCSSSCEEEECCSSS
T ss_pred             cccCCCCCCCCeEEEEcCCC
Confidence            11     2457899998544

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=98.99  E-value=3.5e-09  Score=90.64  Aligned_cols=156  Identities=12%  Similarity=-0.009  Sum_probs=89.5

Q ss_pred             cEEEEEecCCCCcccccChhH---HHHHHHHhCCEEEEecccccccccCcccccccC------CCCCcceEEEcCcccCC
Q 048438            5 PLFLCATIGTTAITAVDPLKP---LCDVAKQFGIWVHVDAAYAGSACIFPEFRHFID------GVEGADSFSLNAHKWFF   75 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~---i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~------~~~~~Ds~~~~~hK~l~   75 (239)
                      +-+|+++..+|.+|.+.|.++   |+++|++||+++++|.+|+..............      .-...+.++.+++|.++
T Consensus       169 ~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~  248 (396)
T 3jtx_A          169 TKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSN  248 (396)
T ss_dssp             EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTSS
T ss_pred             cEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEeccccccC
Confidence            456677788899999987665   899999999999999999864332111111010      00237888999999754


Q ss_pred             Cc-ccceEEEeeCcccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC
Q 048438           76 AT-LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD  153 (239)
Q Consensus        76 ~P-~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~  153 (239)
                      .| ..+|+++. +++.+......       . .....+.. .....+..+++.  .+.+++..++..++.+++.+.|++.
T Consensus       249 ~~G~r~G~~~~-~~~~~~~~~~~-------~-~~~~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~  317 (396)
T 3jtx_A          249 VPGLRSGFVAG-DAELLKNFLLY-------R-TYHGSAMSIPVQRASIAAWDD--EQHVIDNRRLYQEKFERVIPILQQV  317 (396)
T ss_dssp             CGGGCCEEEEE-CHHHHHHHHHH-------H-HHHTCCCCHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             CcccceEEEEe-CHHHHHHHHHH-------H-hhcccCCCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            44 44677654 33333222100       0 00000001 111222223332  3456677777788888999999875


Q ss_pred             CCeEEEcCCCeeEEEEEEcC
Q 048438          154 KRFEVVFPCHFAVVCFRVSP  173 (239)
Q Consensus       154 ~g~~~~~~~~~~iv~f~~~~  173 (239)
                        +.+..+....++.+.++.
T Consensus       318 --~~~~~~~~~~~~~~~~~~  335 (396)
T 3jtx_A          318 --FDVKLPDASFYIWLKVPD  335 (396)
T ss_dssp             --SCCCCCSSSSEEEEECTT
T ss_pred             --CCccCCCeeEEEEEECCC
Confidence              333333344566667654

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=98.97  E-value=2.3e-09  Score=92.93  Aligned_cols=194  Identities=12%  Similarity=-0.011  Sum_probs=103.8

Q ss_pred             cEEEEEe-cCCCCcccccChh---HHHHHH-HHhCCEEEEecccccccccCcccc--ccc-----CCCCCcceEEEcCcc
Q 048438            5 PLFLCAT-IGTTAITAVDPLK---PLCDVA-KQFGIWVHVDAAYAGSACIFPEFR--HFI-----DGVEGADSFSLNAHK   72 (239)
Q Consensus         5 p~~vv~t-~gtt~~G~i~pl~---~i~~i~-~~~gi~lhvD~A~~~~~~~~~~~~--~~~-----~~~~~~Ds~~~~~hK   72 (239)
                      +-+|+++ ..+|.||.+.|.+   +|+++| ++||+++++|.+|+...+.-....  ...     .+....+.++.+++|
T Consensus       181 ~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK  260 (427)
T 3ppl_A          181 VKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSK  260 (427)
T ss_dssp             EEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTT
T ss_pred             CeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhccCCCCcEEEEechhh
Confidence            4455544 7789999998887   888888 999999999999986433211100  001     012246788999999


Q ss_pred             cCCCcccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCH-----HHHHHHHHHHHHH----H
Q 048438           73 WFFATLDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGM-----ENLRHFLRSHVNM----A  143 (239)
Q Consensus        73 ~l~~P~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-----~g~~~~~~~~~~l----a  143 (239)
                      +++...++|+++.. ++.+.....          .....+.....+....+...+..     +.+++..+...+.    .
T Consensus       261 ~~~~G~r~G~~~~~-~~l~~~~~~----------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~  329 (427)
T 3ppl_A          261 ITLAGAGVSFFLTS-AENRKWYTG----------HAGIRGIGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKVL  329 (427)
T ss_dssp             TSCTTSSCEEEECC-HHHHHHHHH----------HHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCcCccEEEEEcC-HHHHHHHHH----------HhhcccCCCCHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHH
Confidence            96655667776653 333222110          00000011122222222222221     1222333333333    3


Q ss_pred             HHHHHHHhCCCCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEE-EEEE--
Q 048438          144 RLFERLVSGDKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMT-NVVL--  220 (239)
Q Consensus       144 ~~l~~~l~~~~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~-~~~~--  220 (239)
                      +.+.+.+..++++++..+...+.+.+.+++..                        ...+.+.|.++|..+.+ ....  
T Consensus       330 ~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~~------------------------~~~~~~~l~~~gv~v~~~g~~~~~  385 (427)
T 3ppl_A          330 EILDSRLAEYGVAQWTVPAGGYFISLDVVPGT------------------------ASRVAELAKEAGIALTGAGSSYPL  385 (427)
T ss_dssp             HHHHHHHGGGTCCEECCCSBSSCEEEECSTTC------------------------HHHHHHHHHHTTEECCCTTTTSGG
T ss_pred             HHHHHhcCCCCceEEeCCCccEEEEEECCcch------------------------HHHHHHHHHHCCCEEecCcCcCCC
Confidence            44444444444677665656667777776421                        12455666666655443 1111  


Q ss_pred             ---CCEeEEEEEecCC
Q 048438          221 ---GGIYAIRFATGAT  233 (239)
Q Consensus       221 ---~g~~~lR~~~~~~  233 (239)
                         .+..++|+++...
T Consensus       386 ~~~~~~~~~Ris~~~~  401 (427)
T 3ppl_A          386 RQDPENKNLRLAPSLP  401 (427)
T ss_dssp             GCCTTSCEEEECCSSS
T ss_pred             CCCCCCCeEEEECCCC
Confidence               2467899998554

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=98.96  E-value=2.9e-09  Score=93.47  Aligned_cols=212  Identities=11%  Similarity=0.025  Sum_probs=105.7

Q ss_pred             ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-c
Q 048438            4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-L   78 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~   78 (239)
                      .+.+|++.-..++.|.+.|    +++|.++|++||+++++|.+|++.......+.....++ ..|.++++  |.+++. .
T Consensus       221 ~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~-~pdi~t~s--K~l~gG~~  297 (460)
T 3gju_A          221 TIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGTMFGSDHYGI-KPDLITIA--KGLTSAYA  297 (460)
T ss_dssp             GEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTC-CCSEEEEC--GGGTTTSS
T ss_pred             CEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCC-CCCeeeee--hhhcCCCC
Confidence            4567777777788888777    99999999999999999999884321111110012233 27887765  998764 3


Q ss_pred             cceEEEeeCcccccccccC--CCCccCCCCceecCCCCCChHHHHHHHHHhCHHHH-HHHHHHHHHHHHHHHHHHhCCCC
Q 048438           79 DCCCLWATNPEYLKNKATE--SKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENL-RHFLRSHVNMARLFERLVSGDKR  155 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~-~~~~~~~~~la~~l~~~l~~~~g  155 (239)
                      ..|.++.++ +........  ....+. ...+. .+......+...+++.+..+.+ ++..+....+.+.+.+.+.+.+.
T Consensus       298 ~lg~v~~~~-~i~~~~~~~~~~~~~~~-~~~t~-~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  374 (460)
T 3gju_A          298 PLSGVIVAD-RVWQVLVQGSDKLGSLG-HGWTY-SAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKAVGGHKN  374 (460)
T ss_dssp             CCEEEEEEH-HHHHHHHHHHHHHCSCS-CCCTT-TTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred             CeEEEEECH-HHHHHHhcccccccccc-cCCCC-CCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            567777643 322221100  000000 00000 1111112222334443322322 22222223334444445555555


Q ss_pred             eEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCC
Q 048438          156 FEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLT  235 (239)
Q Consensus       156 ~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t  235 (239)
                      +..+ .+..+++.+.+......       . .....+    ......+.+.|.++|.++....   +..++|+++....|
T Consensus       375 ~~~~-~~~g~~~~~~~~~~~~~-------~-~~~~~~----~~~~~~~~~~l~~~Gv~v~~~~---~~~~iRi~~~~~~t  438 (460)
T 3gju_A          375 VGEV-RGDGMLAAVEFVADKDD-------R-VFFDAS----QKIGPQVATALAASGVIGRAMP---QGDILGFAPPLCLT  438 (460)
T ss_dssp             EEEE-EEETTEEEEEECSBTTT-------T-BCCCGG----GCHHHHHHHHHHHTTEECEECS---SSCEEEECCCTTCC
T ss_pred             eEEE-eeeeEEEEEEEccCccc-------c-ccccch----HHHHHHHHHHHHHCCeEEecCC---CCCEEEEECCCCCC
Confidence            5443 23345677776542100       0 000000    1223467777877876544321   34789999665555


Q ss_pred             Cc
Q 048438          236 EE  237 (239)
Q Consensus       236 ~~  237 (239)
                      ++
T Consensus       439 ~e  440 (460)
T 3gju_A          439 RE  440 (460)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=98.95  E-value=7.4e-09  Score=90.82  Aligned_cols=205  Identities=10%  Similarity=0.009  Sum_probs=105.6

Q ss_pred             ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-c
Q 048438            4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-L   78 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~   78 (239)
                      .+.+|++.-..++.|.+.|    +++|.++|++||+++++|.+|.+.......+.....++ ..|.++++  |.+++. .
T Consensus       219 ~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~-~pdi~t~s--K~l~gg~~  295 (459)
T 4a6r_A          219 KVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGEWFGHQHFGF-QPDLFTAA--KGLSSGYL  295 (459)
T ss_dssp             GEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTC-CCSEEEEC--GGGGTTSS
T ss_pred             CEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCC-CCCeeehh--hhhcCCCC
Confidence            4567777777788888888    99999999999999999999875321111111012233 37888765  988764 4


Q ss_pred             cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHH-HHHHHHHH----HHhCC
Q 048438           79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHV-NMARLFER----LVSGD  153 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~-~la~~l~~----~l~~~  153 (239)
                      ..|+++.+ ++........... .  ...++ .+.+........+++.+..+   +..++.. ++.+++++    .|.+.
T Consensus       296 ~lg~v~~~-~~i~~~~~~~~~~-~--~~~t~-~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~~~~~~l~~~l~~~  367 (459)
T 4a6r_A          296 PIGAVFVG-KRVAEGLIAGGDF-N--HGFTY-SGHPVCAAVAHANVAALRDE---GIVQRVKDDIGPYMQKRWRETFSRF  367 (459)
T ss_dssp             CCEEEEEC-HHHHHHHHHHCTT-H--HHHHH-CSCHHHHHHHHHHHHHHHHT---CHHHHHHHTHHHHHHHHHHHHHTTC
T ss_pred             CccceeeC-HHHHHHhhcCCCc-c--cCCCC-CCCHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            57777764 3332221100000 0  00010 11111122222334433222   2333333 44444444    44555


Q ss_pred             CCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCC
Q 048438          154 KRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGAT  233 (239)
Q Consensus       154 ~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~  233 (239)
                      +.+..+ ++..+++.|.+......       . .....+    ......+.+.|.++|.++...    | .++|+++...
T Consensus       368 ~~~~~~-~~~g~~~~~~~~~~~~~-------~-~~~~~~----~~~~~~~~~~l~~~Gv~v~~~----g-~~iRi~~~~~  429 (459)
T 4a6r_A          368 EHVDDV-RGVGMVQAFTLVKNKAK-------R-ELFPDF----GEIGTLCRDIFFRNNLIMRAC----G-DHIVSAPPLV  429 (459)
T ss_dssp             TTEEEE-EEETTEEEEEECSBTTT-------T-BCCSST----THHHHHHHHHHHHTTEECEEE----T-TEEEECCCTT
T ss_pred             CCeEEE-EEEEEEEEEEEecCccc-------c-ccccch----HHHHHHHHHHHHHCCeEEecC----C-CEEEEECCCC
Confidence            555444 33455677777542100       0 000001    123346777788887665542    3 7899996655


Q ss_pred             CCCc
Q 048438          234 LTEE  237 (239)
Q Consensus       234 ~t~~  237 (239)
                      .|.+
T Consensus       430 ~t~e  433 (459)
T 4a6r_A          430 MTRA  433 (459)
T ss_dssp             CCHH
T ss_pred             CCHH
Confidence            5544

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=98.92  E-value=2.3e-08  Score=87.44  Aligned_cols=206  Identities=12%  Similarity=-0.004  Sum_probs=103.4

Q ss_pred             ccEEEEEecCC-CCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcc
Q 048438            4 IPLFLCATIGT-TAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATL   78 (239)
Q Consensus         4 ~p~~vv~t~gt-t~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~   78 (239)
                      .+.+|++.-.. ++.|.+.|    +++|.++|++||+++++|.+|++.......+.....++. .|.++++  |.+++.+
T Consensus       210 ~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~a~~~~~~~-~di~t~s--K~l~~G~  286 (448)
T 3dod_A          210 EIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMFACEHENVQ-PDLMAAG--KGITGGY  286 (448)
T ss_dssp             GEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCC-CSEEEEC--GGGGTTS
T ss_pred             CEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcccchhhhhhcCCC-CCEEEec--ccccCCc
Confidence            34566666666 77888777    999999999999999999998743211111111122332 7877765  9987652


Q ss_pred             -cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHH---HHHHHhCHHHHHHHHHHHHHHHHHHHHHHhC--
Q 048438           79 -DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLW---FVIRNYGMENLRHFLRSHVNMARLFERLVSG--  152 (239)
Q Consensus        79 -g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~--  152 (239)
                       ..|+++.++ +..........  . ...+....+-....+...   .+++.+..+   +..++..++.+++++.|.+  
T Consensus       287 ~~ig~v~~~~-~~~~~~~~~~~--~-~~~~~~~~t~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~~~~~l~~l~  359 (448)
T 3dod_A          287 LPIAVTFATE-DIYKAFYDDYE--N-LKTFFHGHSYTGNQLGCAVALENLALFESE---NIVEQVAEKSKKLHFLLQDLH  359 (448)
T ss_dssp             SCCEEEEEEH-HHHHTTCSCGG--G-CCCCCCCCTTTTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHT
T ss_pred             CceEEEEECH-HHHHHhhhccc--c-CCcccccCCCCcCHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHHHHHHh
Confidence             567777643 33222211000  0 000000011111223333   334433222   3344445666666666544  


Q ss_pred             -CCCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEec
Q 048438          153 -DKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATG  231 (239)
Q Consensus       153 -~~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~  231 (239)
                       .+.+..+ +....++.+.+......       .   ...+..  ......+.+.|.++|.++.+.    | .++|+++.
T Consensus       360 ~~~~~~~~-~~~g~~~~~~~~~~~~~-------~---~~~~~~--~~~~~~~~~~l~~~Gv~~~~~----~-~~iRi~~~  421 (448)
T 3dod_A          360 ALPHVGDI-RQLGFMCGAELVRSKET-------K---EPYPAD--RRIGYKVSLKMRELGMLTRPL----G-DVIAFLPP  421 (448)
T ss_dssp             TSTTEEEE-EEETTEEEEEECSBTTT-------T---BCCCGG--GCHHHHHHHHHHHTTEECCEE----T-TEEEECCC
T ss_pred             cCCCeEEE-EeeeEEEEEEEccCccc-------c---cccchh--hHHHHHHHHHHHHCCcEEecc----C-CEEEEECC
Confidence             3333322 22344666776542100       0   000000  001235667777787655432    3 68999876


Q ss_pred             CCCCCc
Q 048438          232 ATLTEE  237 (239)
Q Consensus       232 ~~~t~~  237 (239)
                      ...|++
T Consensus       422 ~~~t~e  427 (448)
T 3dod_A          422 LASTAE  427 (448)
T ss_dssp             TTCCHH
T ss_pred             CCCCHH
Confidence            655544

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=98.91  E-value=1.2e-08  Score=89.61  Aligned_cols=193  Identities=10%  Similarity=-0.076  Sum_probs=106.2

Q ss_pred             ccEEEEEec-CCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-
Q 048438            4 IPLFLCATI-GTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-   77 (239)
Q Consensus         4 ~p~~vv~t~-gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-   77 (239)
                      .+.+|++.. ..+.+|.+.|    +++|.++|++||+++++|.+|.+..-....+.....++ ..|.+++  .|.+++. 
T Consensus       233 ~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~~~a~~~~~~-~pdiit~--sK~l~gG~  309 (457)
T 3tfu_A          233 ELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGV-SPDIMCV--GKALTGGY  309 (457)
T ss_dssp             GEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTC-CCSEEEE--CGGGGTTS
T ss_pred             CEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccchhHhHhcCC-CceEEEE--ChhhhCCC
Confidence            356676766 6788898887    99999999999999999999875321111010012233 3788755  5988775 


Q ss_pred             ccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHH---HHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC-
Q 048438           78 LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLW---FVIRNYGMENLRHFLRSHVNMARLFERLVSGD-  153 (239)
Q Consensus        78 ~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~-  153 (239)
                      ...|+++.++ +............     +....+-....+...   ++++.+..+   +..++..++.+++++.|+++ 
T Consensus       310 ~~lG~v~~~~-~i~~~~~~~~~~~-----~~~~~t~~~n~~a~aaa~aaL~~~~~~---~~~~~~~~~~~~l~~~L~~l~  380 (457)
T 3tfu_A          310 LSLAATLCTA-DVAHTISAGAAGA-----LMHGPTFMANPLACAVSVASVELLLGQ---DWRTRITELAAGLTAGLDTAR  380 (457)
T ss_dssp             SCCEEEEEEH-HHHHHHHHSSSCS-----CCCCCTTTTCHHHHHHHHHHHHHHHTS---CHHHHHHHHHHHHHHHHGGGG
T ss_pred             cceEEEEEcH-HHHHHhhccCCCc-----eeEecCCCcCHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHh
Confidence            2577777653 3222111000000     000000011223333   334433222   34555667888888888764 


Q ss_pred             --CCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEec
Q 048438          154 --KRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATG  231 (239)
Q Consensus       154 --~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~  231 (239)
                        +++..+ +...+++.|.++...                +       ...+.+.|.++|.+...     ...++|+++.
T Consensus       381 ~~~~v~~v-r~~G~~~~i~l~~~~----------------~-------~~~~~~~l~~~Gv~v~~-----~~~~lRi~p~  431 (457)
T 3tfu_A          381 ALPAVTDV-RVCGAIGVIECDRPV----------------D-------LAVATPAALDRGVWLRP-----FRNLVYAMPP  431 (457)
T ss_dssp             GSTTEEEE-EECSSCEEEEESSCC----------------C-------HHHHHHHHHHTTEECCC-----BTTEEEECCC
T ss_pred             cCCCeeee-ecCCeEEEEEECCcc----------------c-------HHHHHHHHHHCCeEEEe-----cCCEEEEECC
Confidence              444433 234567777775421                0       12566777777755432     2258898865


Q ss_pred             CCCCCc
Q 048438          232 ATLTEE  237 (239)
Q Consensus       232 ~~~t~~  237 (239)
                      ...|.+
T Consensus       432 ~~~t~e  437 (457)
T 3tfu_A          432 YICTPA  437 (457)
T ss_dssp             TTCCHH
T ss_pred             CCCCHH
Confidence            554543

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=98.86  E-value=3.3e-08  Score=85.81  Aligned_cols=154  Identities=10%  Similarity=-0.029  Sum_probs=86.0

Q ss_pred             ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc
Q 048438            4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD   79 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g   79 (239)
                      .+.+|++....+++|.+.|    +++|.++|++||+++|+|.+|.+. ...........++. .|.+++  .|.++++..
T Consensus       202 ~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~-~~g~~~~~~~~~~~-~di~t~--sK~~~~G~~  277 (434)
T 3l44_A          202 EVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFMYGGAQDLLGVT-PDLTAL--GKVIGGGLP  277 (434)
T ss_dssp             GEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT-TSSSSCHHHHHTCC-CSEEEE--EGGGGTTSS
T ss_pred             CEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccce-eccccHHHHHcCCC-CCeeeh--hhhhcCCcC
Confidence            3467777777778899998    999999999999999999999754 21111100112332 777665  599887777


Q ss_pred             ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHH---HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhC----
Q 048438           80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKL---WFVIRNYGMENLRHFLRSHVNMARLFERLVSG----  152 (239)
Q Consensus        80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~----  152 (239)
                      .|.++. +++.+.......       ......+-....+..   ..+++.+..   ++..++..++.+++++.|++    
T Consensus       278 iG~~~~-~~~i~~~~~~~~-------~~~~~~t~~~~~~a~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~  346 (434)
T 3l44_A          278 IGAYGG-KKEIMEQVAPLG-------PAYQAGTMAGNPASMASGIACLEVLQQ---EGLYEKLDELGATLEKGILEQAAK  346 (434)
T ss_dssp             CEEEEE-CHHHHTTBTTTS-------SBCCCCTTTTCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeeEEE-cHHHHHhhccCC-------CcccCCCCCcCHHHHHHHHHHHHHHHc---ccHHHHHHHHHHHHHHHHHHHHHh
Confidence            888865 444433322100       000000111122332   233443322   23445555666777776654    


Q ss_pred             CCCeEEEcCCCeeEEEEEEcC
Q 048438          153 DKRFEVVFPCHFAVVCFRVSP  173 (239)
Q Consensus       153 ~~g~~~~~~~~~~iv~f~~~~  173 (239)
                      .+.+..+ +...+++.+.+..
T Consensus       347 ~~~~~~~-~~~g~~~~~~~~~  366 (434)
T 3l44_A          347 HNIDITL-NRLKGALTVYFTT  366 (434)
T ss_dssp             TTCCEEE-EEETTEEEEEESS
T ss_pred             CCCCEEE-EeeccEEEEEEec
Confidence            2222221 3345677777754

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=98.85  E-value=1.4e-08  Score=88.11  Aligned_cols=84  Identities=15%  Similarity=-0.011  Sum_probs=58.2

Q ss_pred             ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc
Q 048438            4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD   79 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g   79 (239)
                      .+.+|++....+++|.+.|    +++|.++|++||+++++|.+|++. ...........++ ..|.++++  |.+++...
T Consensus       199 ~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~~~~~~~~~-~~di~t~s--K~~~~G~~  274 (427)
T 3fq8_A          199 EIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF-RIAYGGVQEKFGV-TPDLTTLG--KIIGGGLP  274 (427)
T ss_dssp             TEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTBTTHHHHHTTC-CCSEEEEC--GGGGTTSS
T ss_pred             CEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCcchhhHhcCC-CCChhhhh--hhhhCCcc
Confidence            5677888888888999999    999999999999999999999843 2111011012233 27877665  99875444


Q ss_pred             ceEEEeeCccccc
Q 048438           80 CCCLWATNPEYLK   92 (239)
Q Consensus        80 ~g~l~~~~~~~l~   92 (239)
                      .|+++. +++.+.
T Consensus       275 ~G~~~~-~~~~~~  286 (427)
T 3fq8_A          275 VGAYGG-KREIMQ  286 (427)
T ss_dssp             CEEEEE-CHHHHT
T ss_pred             eEEEEE-cHHHHH
Confidence            787766 444443

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=98.82  E-value=6.5e-08  Score=84.01  Aligned_cols=154  Identities=9%  Similarity=0.007  Sum_probs=87.2

Q ss_pred             ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc
Q 048438            4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD   79 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g   79 (239)
                      .+.+|+++...+++|.+.|    +++|.++|++||+++++|.+|++. .....+.....++ ..|.+++  +|++++...
T Consensus       203 ~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~-~~di~s~--sK~l~~G~~  278 (434)
T 2epj_A          203 RIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGF-RLGLEGAQGYFNI-EGDIIVL--GKIIGGGFP  278 (434)
T ss_dssp             GEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTT-TSSTTHHHHHHTC-CCSEEEE--EGGGGTTSS
T ss_pred             CEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhce-eCCcchhhHHhCC-CCCeeee--cchhcCCcc
Confidence            4567777777677999988    999999999999999999999843 2111110001233 2787654  699887445


Q ss_pred             ceEEEeeCcccccccccCCCCccCCCCceecCCC-CCChHHH---HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC-
Q 048438           80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSR-SFRSLKL---WFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK-  154 (239)
Q Consensus        80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~-  154 (239)
                      .|+++.+ ++.+....... .      . ...++ ....+..   ..+++.+..   ++..++..++.+++.+.|+++. 
T Consensus       279 ~G~v~~~-~~~~~~l~~~~-~------~-~~~~t~~~~~~~~aa~~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~  346 (434)
T 2epj_A          279 VGAVAGS-REVMSLLTPQG-K------V-FNAGTFNAHPITMAAGLATLKALEE---EPVYSVSREAAKALEEAASEVLD  346 (434)
T ss_dssp             CEEEEEC-HHHHTTBTTTS-S------B-CCCCTTTTCHHHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeeeeec-HHHHHhhccCC-C------c-ccCCCCCcCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHh
Confidence            7777774 34433322100 0      0 00111 1122222   233443322   3455666678888888886531 


Q ss_pred             --CeEEEcCCCeeEEEEEEcC
Q 048438          155 --RFEVVFPCHFAVVCFRVSP  173 (239)
Q Consensus       155 --g~~~~~~~~~~iv~f~~~~  173 (239)
                        ++....++..+++.+.++.
T Consensus       347 ~~~~~~~~~~~g~~~~i~~~~  367 (434)
T 2epj_A          347 RTGLPYTINRVESMMQLFIGV  367 (434)
T ss_dssp             HHTCCEEEEEETTEEEEEETC
T ss_pred             hCCCcEEEEEeeeEEEEEEeC
Confidence              3321113345677888764

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=98.82  E-value=6.3e-08  Score=83.97  Aligned_cols=84  Identities=14%  Similarity=0.079  Sum_probs=56.7

Q ss_pred             ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc
Q 048438            4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD   79 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g   79 (239)
                      .+.+|++....++.|.+.|    +++|.++|++||+++++|.+|++. -....+.....++ ..|.+++  .|.+++...
T Consensus       200 ~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~-r~g~~~~~~~~~~-~pdi~t~--sK~~~~G~~  275 (429)
T 4e77_A          200 EVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF-RVALAGAQDYYHV-IPDLTCL--GKIIGGGMP  275 (429)
T ss_dssp             TEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBT-TTBTTCHHHHTTC-CCSEEEE--EGGGGTTSC
T ss_pred             CEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc-ccCcchHHHhcCC-CCCeeee--cccccCCCC
Confidence            4567777777777899988    999999999999999999999843 1111110012233 2687655  599887666


Q ss_pred             ceEEEeeCccccc
Q 048438           80 CCCLWATNPEYLK   92 (239)
Q Consensus        80 ~g~l~~~~~~~l~   92 (239)
                      .|+++. +++.+.
T Consensus       276 ~G~~~~-~~~~~~  287 (429)
T 4e77_A          276 VGAFGG-RREVMN  287 (429)
T ss_dssp             CEEEEE-CHHHHT
T ss_pred             eEEEEE-CHHHHH
Confidence            787766 344433

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=98.81  E-value=7e-08  Score=83.72  Aligned_cols=153  Identities=14%  Similarity=0.004  Sum_probs=86.5

Q ss_pred             ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc
Q 048438            4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD   79 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g   79 (239)
                      .+.+|++....++.|.+.|    +++|.++|++||+++++|.+|.+. ...........++ ..|.+++  .|.+++...
T Consensus       200 ~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~~~~~~~~~-~~di~t~--sK~~~~G~~  275 (429)
T 3k28_A          200 DIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF-RVAYNCGQGYYGV-TPDLTCL--GKVIGGGLP  275 (429)
T ss_dssp             GEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT-TSSTTHHHHHHTC-CCSEEEE--CGGGGTTSC
T ss_pred             CEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCcchHHHHhCC-CCceehh--hhhhcCCCC
Confidence            4567777777788899999    999999999999999999999753 2111000001233 2777765  599877667


Q ss_pred             ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHH---HHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC---
Q 048438           80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLW---FVIRNYGMENLRHFLRSHVNMARLFERLVSGD---  153 (239)
Q Consensus        80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~---  153 (239)
                      +|+++.+ ++.+.......       ......+-....+...   .+++.+.    ++..++..++.+++++.|+++   
T Consensus       276 iG~~~~~-~~~~~~~~~~~-------~~~~~~t~~~~~~a~aaa~aal~~~~----~~~~~~~~~~~~~l~~~L~~~~~~  343 (429)
T 3k28_A          276 VGAYGGK-AEIMRQVAPSG-------PIYQAGTLSGNPLAMAAGYETLVQLT----PESYVEFERKAEMLEAGLRKAAEK  343 (429)
T ss_dssp             CEEEEEC-HHHHTTBTTTS-------SBCCCCTTTTCHHHHHHHHHHHHTCC----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEc-HHHHhhhccCC-------CccccCCCCCChHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhh
Confidence            8887764 34433322100       0000001111223333   3444333    455556667777777777653   


Q ss_pred             -CCeEEEcCCCeeEEEEEEcC
Q 048438          154 -KRFEVVFPCHFAVVCFRVSP  173 (239)
Q Consensus       154 -~g~~~~~~~~~~iv~f~~~~  173 (239)
                       +.+..+ +...+++.|.+..
T Consensus       344 ~~~~~~~-~~~g~~~~~~~~~  363 (429)
T 3k28_A          344 HGIPHHI-NRAGSMIGIFFTD  363 (429)
T ss_dssp             TTCCCEE-EEETTEEEEESSS
T ss_pred             CCCCEEE-EeeccEEEEEEec
Confidence             222211 2334566676643

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}

Probab=98.78  E-value=2.9e-08  Score=85.93  Aligned_cols=192  Identities=13%  Similarity=0.005  Sum_probs=101.1

Q ss_pred             cEEEE-EecCCCCcccccChh---HHHHHHH-HhCCEEEEecccccccccCc--cccccc-----CCCCCcceEEEcCcc
Q 048438            5 PLFLC-ATIGTTAITAVDPLK---PLCDVAK-QFGIWVHVDAAYAGSACIFP--EFRHFI-----DGVEGADSFSLNAHK   72 (239)
Q Consensus         5 p~~vv-~t~gtt~~G~i~pl~---~i~~i~~-~~gi~lhvD~A~~~~~~~~~--~~~~~~-----~~~~~~Ds~~~~~hK   72 (239)
                      +-+|+ ....+|.||.+.|.+   +|+++|+ +||+++++|.+|+...+...  ......     .+....+++..+++|
T Consensus       179 ~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK  258 (422)
T 3d6k_A          179 VKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSK  258 (422)
T ss_dssp             EEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEEESTT
T ss_pred             CeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhhHhhccCCCCcEEEEcChhh
Confidence            44555 566789999999877   7778888 99999999999974222111  011110     111236788999999


Q ss_pred             cCCCc-ccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCH-H----HHHHHHHHHHHHHHHH
Q 048438           73 WFFAT-LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGM-E----NLRHFLRSHVNMARLF  146 (239)
Q Consensus        73 ~l~~P-~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-~----g~~~~~~~~~~la~~l  146 (239)
                      + +.| ..+|+++.. ++.+......          ....+.....+....+...+.. .    .+++..++..+..+++
T Consensus       259 ~-~~~GlriG~~~~~-~~l~~~l~~~----------~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l  326 (422)
T 3d6k_A          259 I-THAGSGVSFFASS-KENIEWYASH----------ANVRGIGPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERV  326 (422)
T ss_dssp             T-SCTTSSCEEEECC-HHHHHHHHHH----------HHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             h-cCcccceEEEEeC-HHHHHHHHHH----------HHhhcCCCCHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHH
Confidence            9 455 347888764 3333222100          0000000112333333333322 1    2223333333344444


Q ss_pred             HHHH----hCCCCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEE-EEEE-
Q 048438          147 ERLV----SGDKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMT-NVVL-  220 (239)
Q Consensus       147 ~~~l----~~~~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~-~~~~-  220 (239)
                      .+.|    .+.+++++..+...+.+.+.++...                        ...+.+.|.++|..+.. .... 
T Consensus       327 ~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~~------------------------~~~~~~~l~~~gV~v~~~g~~f~  382 (422)
T 3d6k_A          327 LEILDSRLSEYGVAKWTSPTGGYFISVDVVPGT------------------------ASRVVELAKEAGIALTGAGSSFP  382 (422)
T ss_dssp             HHHHHHHHGGGTCEEECCCSBSSCEEEEESTTC------------------------HHHHHHHHHHTTEECCCTTTTSG
T ss_pred             HHHHHHhcCcCCceEEeCCCcceEEEEECCCCC------------------------HHHHHHHHHHCCeEEEcCccccC
Confidence            4444    3344467665555667777775421                        11445566666655443 1111 


Q ss_pred             ----CCEeEEEEEecC
Q 048438          221 ----GGIYAIRFATGA  232 (239)
Q Consensus       221 ----~g~~~lR~~~~~  232 (239)
                          .+..++|+++..
T Consensus       383 ~~~~~~~~~iRis~~~  398 (422)
T 3d6k_A          383 LHNDPNNENIRLAPSL  398 (422)
T ss_dssp             GGCCTTSCEEEECCSS
T ss_pred             CCCCCCCCeEEEecCC
Confidence                135789999876

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=98.76  E-value=2.3e-08  Score=86.31  Aligned_cols=186  Identities=9%  Similarity=0.010  Sum_probs=97.2

Q ss_pred             EEEEEecC-CCCcccccChhHHH---HHHH------HhCCEEEEecccccccccCccccc---ccCCCCCcc---eEEEc
Q 048438            6 LFLCATIG-TTAITAVDPLKPLC---DVAK------QFGIWVHVDAAYAGSACIFPEFRH---FIDGVEGAD---SFSLN   69 (239)
Q Consensus         6 ~~vv~t~g-tt~~G~i~pl~~i~---~i~~------~~gi~lhvD~A~~~~~~~~~~~~~---~~~~~~~~D---s~~~~   69 (239)
                      .+|+++.. +|.+|.+.|.+++.   ++|+      +||+++++|.+|............   ...++. -|   +++.+
T Consensus       181 ~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~S  259 (418)
T 3rq1_A          181 VVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLP-KEILTCVCYS  259 (418)
T ss_dssp             EEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCC-TTEEEEEEEE
T ss_pred             EEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcC-CCceEEEEEe
Confidence            35666666 89999998866655   5555      899999999998654321110011   112221 23   66789


Q ss_pred             CcccCCCc-ccceEEEe--eCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCH--------HHHHHHHHH
Q 048438           70 AHKWFFAT-LDCCCLWA--TNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGM--------ENLRHFLRS  138 (239)
Q Consensus        70 ~hK~l~~P-~g~g~l~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~--------~g~~~~~~~  138 (239)
                      ++|.++.| ...|+++.  ++++.+....... ..     ...........+....+...+..        +..++..++
T Consensus       260 ~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~  333 (418)
T 3rq1_A          260 LSKGFTMYGQRVGAMIGISDDEEIADEFFEVN-KS-----TSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQL  333 (418)
T ss_dssp             STTTTTCCSSCCEEEEEEESSHHHHHHHHHHH-HH-----HHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCcCcCCcceEEEEEeCCHHHHHHHHHHH-HH-----HHhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            99998644 34677665  2443332221000 00     00000001122222332222221        122344556


Q ss_pred             HHHHHHHHHHHHhCCCCeEEEcCCCeeEEEE-EEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEE
Q 048438          139 HVNMARLFERLVSGDKRFEVVFPCHFAVVCF-RVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTN  217 (239)
Q Consensus       139 ~~~la~~l~~~l~~~~g~~~~~~~~~~iv~f-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~  217 (239)
                      ..++.+++.+.|+++ |++++ +++.++..+ .+++                          ...+.+.|.++|....+ 
T Consensus       334 ~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~--------------------------~~~~~~~l~~~gi~v~~-  384 (418)
T 3rq1_A          334 IRDRADIFKQEAAQV-GLPML-PYRGGFFITIPTDS--------------------------ANAICEELKKEHIYVIA-  384 (418)
T ss_dssp             HHHHHHHHHHHHHHH-TCCCC-CCCSSSEEEEECTT--------------------------HHHHHHHHHHTTEECEE-
T ss_pred             HHHHHHHHHHHHHhc-CCCCC-CCCceEEEEcCCCC--------------------------HHHHHHHHHhCCEEEec-
Confidence            677788888888876 77765 444454333 2211                          11455566666665443 


Q ss_pred             EEECCEeEEEEEec
Q 048438          218 VVLGGIYAIRFATG  231 (239)
Q Consensus       218 ~~~~g~~~lR~~~~  231 (239)
                          |..++|+++.
T Consensus       385 ----g~~~iRis~~  394 (418)
T 3rq1_A          385 ----LANGIRIAAC  394 (418)
T ss_dssp             ----CSSEEEEEGG
T ss_pred             ----CCCCeEEEEe
Confidence                3457999965

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=98.76  E-value=6.8e-08  Score=84.41  Aligned_cols=159  Identities=10%  Similarity=-0.045  Sum_probs=86.6

Q ss_pred             ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc
Q 048438            4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD   79 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g   79 (239)
                      .+.+|+++...+++|.+.|    +++|.++|++||+++++|.+|++. .....+.....++ ..|.++  +.|++++...
T Consensus       201 ~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~-~~di~s--~sK~l~~G~~  276 (453)
T 2cy8_A          201 DIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGNHGMQALLDV-QPDLTC--LAKASAGGLP  276 (453)
T ss_dssp             GEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTT-TTCTTHHHHHHTC-CCSEEE--EEGGGGTTSS
T ss_pred             CEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcccc-ccCchhhhHHhCC-CCcEEE--EChhhhCCcc
Confidence            3566666666566898888    999999999999999999999843 2111000001233 278764  5599987566


Q ss_pred             ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHHHhCCC---C
Q 048438           80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRN-YGMENLRHFLRSHVNMARLFERLVSGDK---R  155 (239)
Q Consensus        80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~g~~~~~~~~~~la~~l~~~l~~~~---g  155 (239)
                      .|+++.+ ++.+...........  .......+..........+++. + .   ++..++..++.+++.+.|+++.   +
T Consensus       277 ~G~v~~~-~~~~~~l~~~~~~~~--~~~~t~~~n~~~~aa~~aal~~~~-~---~~~~~~~~~~~~~l~~~L~~~~~~~~  349 (453)
T 2cy8_A          277 GGILGGR-EDVMGVLSRGSDRKV--LHQGTFTGNPITAAAAIAAIDTIL-E---DDVCAKINDLGQFAREAMNHLFARKG  349 (453)
T ss_dssp             CEEEEEC-HHHHTTSSSCC-----------CCCCHHHHHHHHHHHHHHH-H---TTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             eEEEech-HHHHHHhccccCCCc--eeCCCCCCCHHHHHHHHHHHHHHh-h---hhHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            8888875 344333221000000  0000000111112223334544 4 2   3445566678888888876531   3


Q ss_pred             eEEEcCCCeeEEEEEEcC
Q 048438          156 FEVVFPCHFAVVCFRVSP  173 (239)
Q Consensus       156 ~~~~~~~~~~iv~f~~~~  173 (239)
                      +....++..+++.+.+++
T Consensus       350 ~~~~~~~~g~~~~i~~~~  367 (453)
T 2cy8_A          350 LNWLAYGRFSGFHLMPGL  367 (453)
T ss_dssp             CCEEEECCTTEEEEEETS
T ss_pred             CcEEEEEeeeEEEEEEec
Confidence            322124455678888764

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=98.73  E-value=8.8e-09  Score=88.69  Aligned_cols=146  Identities=12%  Similarity=0.047  Sum_probs=83.4

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccC---c--ccccccCCCCCcceEEEcCcccCCC
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIF---P--EFRHFIDGVEGADSFSLNAHKWFFA   76 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~---~--~~~~~~~~~~~~Ds~~~~~hK~l~~   76 (239)
                      ..+|+.+..+|.+|.+.|   +++|+++|++||+++++|.+|.......   +  .... +.....-++++.++||.++ 
T Consensus       184 ~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~s~sK~~~-  261 (412)
T 1ajs_A          184 SIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRY-FVSEGFELFCAQSFSKNFG-  261 (412)
T ss_dssp             CEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHH-HHHTTCCEEEEEECTTTSC-
T ss_pred             cEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHH-HhccCCcEEEEEecccccC-
Confidence            466777888999999855   6689999999999999999976543211   0  0110 1111113478899999865 


Q ss_pred             ccc--ceEEEee--Ccc----cccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhC-----HHHHHHHHHHHHHHH
Q 048438           77 TLD--CCCLWAT--NPE----YLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYG-----MENLRHFLRSHVNMA  143 (239)
Q Consensus        77 P~g--~g~l~~~--~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-----~~g~~~~~~~~~~la  143 (239)
                      |.|  +|++++.  +++    +.......       ...............+..+++...     .+.+++..++..++.
T Consensus       262 ~~G~riG~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  334 (412)
T 1ajs_A          262 LYNERVGNLTVVAKEPDSILRVLSQMQKI-------VRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMR  334 (412)
T ss_dssp             CGGGCEEEEEEECSSHHHHHHHHHHHHHH-------HHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcceEEEEEecCCHHHHHHHHHHHHHH-------HhcccCCCChHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHH
Confidence            555  6888772  333    22111100       000000001111222223333221     235567777888899


Q ss_pred             HHHHHHHhCCC---CeEEE
Q 048438          144 RLFERLVSGDK---RFEVV  159 (239)
Q Consensus       144 ~~l~~~l~~~~---g~~~~  159 (239)
                      +++.+.|++..   ++++.
T Consensus       335 ~~l~~~L~~~~~~~~~~~~  353 (412)
T 1ajs_A          335 SELRARLEALKTPGTWNHI  353 (412)
T ss_dssp             HHHHHHHHHTTCSSCCHHH
T ss_pred             HHHHHHHHhhCCCCCeeEE
Confidence            99999998863   36554

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}

Probab=98.71  E-value=1.9e-07  Score=82.81  Aligned_cols=157  Identities=13%  Similarity=0.106  Sum_probs=88.5

Q ss_pred             ccEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCc-cc---ccccCCC-----CCcc-eEEEcC
Q 048438            4 IPLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFP-EF---RHFIDGV-----EGAD-SFSLNA   70 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~-~~---~~~~~~~-----~~~D-s~~~~~   70 (239)
                      .+-+|+++..+|.||.+.+   +++|+++|++||+++++|.+|+.....-. ..   ......+     ..+. ++..++
T Consensus       235 ~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~  314 (498)
T 3ihj_A          235 DPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHST  314 (498)
T ss_dssp             EEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEES
T ss_pred             CCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEecc
Confidence            4667777788899999855   67799999999999999999986544211 11   1111100     0122 355699


Q ss_pred             cccCCCc--ccceEEEe--eCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhC------------HHHHHH
Q 048438           71 HKWFFAT--LDCCCLWA--TNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYG------------MENLRH  134 (239)
Q Consensus        71 hK~l~~P--~g~g~l~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g------------~~g~~~  134 (239)
                      +|.+.+.  ...|++.+  .++.........         .....+  ...+........+.            .+...+
T Consensus       315 SK~~~G~~G~R~G~~~~~~~~~~l~~~l~~~---------~~~~~~--~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~  383 (498)
T 3ihj_A          315 SKGYMGECGYRGGYMEVINLHPEIKGQLVKL---------LSVRLC--PPVSGQAAMDIVVNPPVAGEESFEQFSREKES  383 (498)
T ss_dssp             SSSTTCCSSSCCEEEEEESCCHHHHHHHHHH---------HHHSCC--CCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHH
T ss_pred             ccccccCcccceEEEEEecCCHHHHHHHHHH---------HhccCC--CCHHHHHHHHHHhcCCccCcccHHHHHHHHHH
Confidence            9998432  33566654  343333222100         000000  01122222222221            122345


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCeEEEcCCCeeEEEE-EEc
Q 048438          135 FLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCF-RVS  172 (239)
Q Consensus       135 ~~~~~~~la~~l~~~l~~~~g~~~~~~~~~~iv~f-~~~  172 (239)
                      +.++..+.++++.+.|+++||+++. +++.++..| ++.
T Consensus       384 ~~~~l~~~~~~l~~~L~~~~g~~~~-~p~gg~~~~~~l~  421 (498)
T 3ihj_A          384 VLGNLAKKAKLTEDLFNQVPGIHCN-PLQGAMYAFPRIF  421 (498)
T ss_dssp             HHHHHHHHHHHHHHHHHTSTTEECC-CCCBSSEECCEEC
T ss_pred             HHHHHHHHHHHHHHHHhcCCCcEec-CCCeEEEEEEecc
Confidence            5567778899999999998898875 556666555 443

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=98.69  E-value=3.6e-08  Score=84.32  Aligned_cols=149  Identities=14%  Similarity=0.090  Sum_probs=82.9

Q ss_pred             ccEEEEEecCCCCcccc---cChhHHHHHHHHhCCEEEEecccccccccCc-cccc--ccCCCCCcceEEEcCcccCCCc
Q 048438            4 IPLFLCATIGTTAITAV---DPLKPLCDVAKQFGIWVHVDAAYAGSACIFP-EFRH--FIDGVEGADSFSLNAHKWFFAT   77 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i---~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~-~~~~--~~~~~~~~Ds~~~~~hK~l~~P   77 (239)
                      ...+++.+..+|.+|.+   +++++|+++|++||+++++|.+|+....... ....  ...+.....+++.+++|.++ +
T Consensus       173 ~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~  251 (397)
T 3fsl_A          173 GSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFS-L  251 (397)
T ss_dssp             TCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTT-C
T ss_pred             CCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEeccccccc-C
Confidence            35677778889999998   4566999999999999999999976543210 0010  01111235677889999975 3


Q ss_pred             cc--ceEEEe--eCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhC--------HHHHHHHHHHHHHHHHH
Q 048438           78 LD--CCCLWA--TNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYG--------MENLRHFLRSHVNMARL  145 (239)
Q Consensus        78 ~g--~g~l~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g--------~~g~~~~~~~~~~la~~  145 (239)
                      .|  +|++++  .+++.+...........     ....+. ...+....+...+.        .+.+++..++..++.++
T Consensus       252 ~G~riG~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~  325 (397)
T 3fsl_A          252 YGERVGGLSVMCEDAEAAGRVLGQLKATV-----RRNYSS-PPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQE  325 (397)
T ss_dssp             GGGCCEEEEEECSSHHHHHHHHHHHHHHH-----HTTTSS-CCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCeeEEEEecCCHHHHHHHHHHHHHHH-----HhccCC-CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34  677764  23332221100000000     000000 01111121111111        34556777778888999


Q ss_pred             HHHHHhCCC---CeEEE
Q 048438          146 FERLVSGDK---RFEVV  159 (239)
Q Consensus       146 l~~~l~~~~---g~~~~  159 (239)
                      +.+.|++.+   ++++.
T Consensus       326 l~~~L~~~~~~~~~~~~  342 (397)
T 3fsl_A          326 LVKVLSTEMPERNFDYL  342 (397)
T ss_dssp             HHHHHHHHCTTSCCTHH
T ss_pred             HHHHHHhcCCCCCceee
Confidence            999998764   55544

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=98.65  E-value=5.9e-09  Score=89.21  Aligned_cols=79  Identities=18%  Similarity=0.109  Sum_probs=53.4

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccC--c--ccccccCCCCCcceEEEcCcccCCCc
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIF--P--EFRHFIDGVEGADSFSLNAHKWFFAT   77 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~--~--~~~~~~~~~~~~Ds~~~~~hK~l~~P   77 (239)
                      ..+++.+..+|.+|.+.|   +++|+++|++||+++++|.+|+......  +  .... +.....-++++.++||+++ +
T Consensus       170 ~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~s~sK~~~-~  247 (394)
T 2ay1_A          170 DMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRL-IASRIPEVLIAASCSKNFG-I  247 (394)
T ss_dssp             CEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHH-HHHHCSSEEEEEECTTTTT-C
T ss_pred             CEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHH-HhhcCCCEEEEEeccCCCc-C
Confidence            466777888999999876   5578999999999999999998653310  0  0000 1111112356779999976 3


Q ss_pred             cc--ceEEEe
Q 048438           78 LD--CCCLWA   85 (239)
Q Consensus        78 ~g--~g~l~~   85 (239)
                      .|  +|++++
T Consensus       248 ~G~riG~~~~  257 (394)
T 2ay1_A          248 YRERTGCLLA  257 (394)
T ss_dssp             GGGCEEEEEE
T ss_pred             cCCccceEEE
Confidence            44  588876

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=98.63  E-value=1.5e-08  Score=87.34  Aligned_cols=155  Identities=9%  Similarity=0.013  Sum_probs=85.1

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccC---c--ccccccCCCCC---cceEEEcCccc
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIF---P--EFRHFIDGVEG---ADSFSLNAHKW   73 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~---~--~~~~~~~~~~~---~Ds~~~~~hK~   73 (239)
                      ..+++.+..+|.||.+.|   +++|+++|++||+++++|.+|+......   +  .... +.....   -++++.+++|.
T Consensus       177 ~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~s~sK~  255 (412)
T 1yaa_A          177 SIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRL-GVEKLSTVSPVFVCQSFAKN  255 (412)
T ss_dssp             CEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHH-HHHHTTTTCCEEEEEECTTT
T ss_pred             CEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHH-HHhcCCCCcceEEEeccCCC
Confidence            356666888999999865   6678999999999999999986432210   0  0000 111111   34678899998


Q ss_pred             CCCccc--ceEEE--e----eCcc----cccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhC-----HHHHHHHH
Q 048438           74 FFATLD--CCCLW--A----TNPE----YLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYG-----MENLRHFL  136 (239)
Q Consensus        74 l~~P~g--~g~l~--~----~~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-----~~g~~~~~  136 (239)
                      ++ |.|  +|+++  .    ++++    .+......    .. ..+  .....+....+..+++...     .+.+++..
T Consensus       256 ~~-~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~----~~-~~~--~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~  327 (412)
T 1yaa_A          256 AG-MYGERVGCFHLALTKQAQNKTIKPAVTSQLAKI----IR-SEV--SNPPAYGAKIVAKLLETPELTEQWHKDMVTMS  327 (412)
T ss_dssp             SC-CGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHH----HH-TTT--SSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred             CC-CcCCcceEEEEEecCCCCCHHHHHHHHHHHHHH----Hh-hcc--CCCChHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            75 666  57776  4    1333    32221100    00 000  0000011122222333211     13566777


Q ss_pred             HHHHHHHHHHHHHHhCCC---CeEEEcCCCeeEEEE
Q 048438          137 RSHVNMARLFERLVSGDK---RFEVVFPCHFAVVCF  169 (239)
Q Consensus       137 ~~~~~la~~l~~~l~~~~---g~~~~~~~~~~iv~f  169 (239)
                      ++..++.+++.+.|++.+   +++++ +++.++..|
T Consensus       328 ~~~~~~~~~l~~~L~~~~~~~~~~~~-~~~~~~~~~  362 (412)
T 1yaa_A          328 SRITKMRHALRDHLVKLGTPGNWDHI-VNQCGMFSF  362 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSCCTHH-HHCCSSEEE
T ss_pred             HHHHHHHHHHHHHHHhhCCCCCeeee-ccCceEEEe
Confidence            778888999999998763   36554 334444433

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=98.61  E-value=7.5e-07  Score=77.03  Aligned_cols=154  Identities=12%  Similarity=0.034  Sum_probs=85.8

Q ss_pred             ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc
Q 048438            4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD   79 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g   79 (239)
                      .+.+|+++...+++|.+.|    +++|.++ ++||+++++|.+|++. .....+.....++ ..|.+  +++|++++...
T Consensus       199 ~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~-~~di~--s~sK~l~~G~~  273 (424)
T 2e7u_A          199 EIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGF-RLAFGGATELLGL-KPDLV--TLGKILGGGLP  273 (424)
T ss_dssp             GEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTT-TSSTTHHHHHHTC-CCSEE--EECGGGGTTSS
T ss_pred             CEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcccc-ccchhHHHHHhCC-Ccchh--hhhhhhhCCcc
Confidence            4566767666666899888    9999999 9999999999999843 2111110001233 27866  55799987555


Q ss_pred             ceEEEeeCcccccccccCCCCccCCCCceecCCC-CCChHHH---HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC--
Q 048438           80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSR-SFRSLKL---WFVIRNYGMENLRHFLRSHVNMARLFERLVSGD--  153 (239)
Q Consensus        80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~--  153 (239)
                      .|+++.+ ++.+....... .       ....+. ....+..   ..+++.+..  .++..++..++.+++.+.|+++  
T Consensus       274 ~G~~~~~-~~~~~~~~~~~-~-------~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~~l~~~L~~~~~  342 (424)
T 2e7u_A          274 AAAYAGR-REIMEKVAPLG-P-------VYQAGTLSGNPLAMAAGLATLELLEE--NPGYYAYLEDLGARLEAGLKEVLK  342 (424)
T ss_dssp             CEEEEEC-HHHHTTBTTTS-S-------BCCCCTTCSCHHHHHHHHHHHHHHHH--CTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEc-HHHHhhhcccC-C-------cccCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHH
Confidence            7877764 34443322100 0       000111 1122322   233443322  1345666668888888888663  


Q ss_pred             -CCeEEEcCCCeeEEEEEEcC
Q 048438          154 -KRFEVVFPCHFAVVCFRVSP  173 (239)
Q Consensus       154 -~g~~~~~~~~~~iv~f~~~~  173 (239)
                       .++....++..+++.+.++.
T Consensus       343 ~~~~~~~~~~~g~~~~i~~~~  363 (424)
T 2e7u_A          343 EKGLPHTVNRVGSMITVFFTE  363 (424)
T ss_dssp             HTTCCCEEEEETTEEEEESSS
T ss_pred             hCCCceEEEeeceEEEEEEeC
Confidence             13321113344577777653

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=98.60  E-value=1.1e-07  Score=83.15  Aligned_cols=78  Identities=23%  Similarity=0.186  Sum_probs=52.3

Q ss_pred             ccEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccC---ccc--ccccCCCCCcceEEEcCcccCC
Q 048438            4 IPLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIF---PEF--RHFIDGVEGADSFSLNAHKWFF   75 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~---~~~--~~~~~~~~~~Ds~~~~~hK~l~   75 (239)
                      ...+++.+..+|.||.+.+   +++|+++|++||+++++|.+|......-   +..  ..... ...-..++.++||.++
T Consensus       202 ~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~g  280 (448)
T 3meb_A          202 KSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVD-AGVEVLVAQSFSKNFG  280 (448)
T ss_dssp             TCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHH-TTCCEEEEEECTTTSC
T ss_pred             CcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhh-cCCcEEEEecccccCC
Confidence            3567788888999999877   4559999999999999999987543221   000  10111 1113356889999976


Q ss_pred             Cccc--ceEE
Q 048438           76 ATLD--CCCL   83 (239)
Q Consensus        76 ~P~g--~g~l   83 (239)
                      . .|  +|.+
T Consensus       281 ~-~G~RiG~l  289 (448)
T 3meb_A          281 L-YGERIGCL  289 (448)
T ss_dssp             C-GGGCCEEE
T ss_pred             C-ccccceee
Confidence            3 34  6766

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*

Probab=98.59  E-value=9.7e-08  Score=81.99  Aligned_cols=140  Identities=11%  Similarity=-0.046  Sum_probs=77.9

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ceE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCC   82 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~   82 (239)
                      +-+|+++..+|.||.+.+  +|++.++++++++++|.+|+....  ..    +......++++.++||.++ +.|  +|+
T Consensus       158 ~k~v~l~~p~NPtG~~~~--~l~~~~~~~~~~ii~De~y~~~~~--~~----l~~~~~~~i~~~S~SK~~g-~~GlRiG~  228 (391)
T 3bwn_A          158 PYIELVTSPNNPDGTIRE--TVVNRPDDDEAKVIHDFAYYWPHY--TP----ITRRQDHDIMLFTFSKITG-HAGSRIGW  228 (391)
T ss_dssp             CEEEEEESSCTTTCCCCC--CCC-----CCCEEEEECTTCSTTT--SC----CCCCBCCSEEEEEHHHHHS-CGGGCEEE
T ss_pred             CEEEEECCCCCCCchhHH--HHHHHhhcCCCEEEEeCCCCCCCC--Cc----cccCCCCeEEEEechhhcC-CCccceEE
Confidence            456667888999999986  565422333499999999974211  10    1111237899999999865 445  488


Q ss_pred             EEeeCcccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhC---------HHHHHHHHHHHHHHHHHHHHHHhC
Q 048438           83 LWATNPEYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYG---------MENLRHFLRSHVNMARLFERLVSG  152 (239)
Q Consensus        83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g---------~~g~~~~~~~~~~la~~l~~~l~~  152 (239)
                      +++.+++.+......       .... ..+.. +....+..+++...         .+.+++..++..+..+++.+.|++
T Consensus       229 ~~~~~~~l~~~l~~~-------~~~~-~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  300 (391)
T 3bwn_A          229 ALVKDKEVAKKMVEY-------IIVN-SIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKE  300 (391)
T ss_dssp             EEECCHHHHHHHHHH-------HHHH-HSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEecCHHHHHHHHHH-------hccc-ccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            776444443322110       0000 00111 11122222333210         234566677777888999999999


Q ss_pred             CCCeEEEcC
Q 048438          153 DKRFEVVFP  161 (239)
Q Consensus       153 ~~g~~~~~~  161 (239)
                      .+++++..+
T Consensus       301 ~~~~~~~~p  309 (391)
T 3bwn_A          301 SDAFTLPKY  309 (391)
T ss_dssp             CSSEECCCC
T ss_pred             CCCcccccC
Confidence            878876543

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=98.57  E-value=2.5e-08  Score=86.29  Aligned_cols=152  Identities=9%  Similarity=-0.004  Sum_probs=83.8

Q ss_pred             ccEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcc-ccc--ccCCCCCcceEEEcCcccCCCc
Q 048438            4 IPLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPE-FRH--FIDGVEGADSFSLNAHKWFFAT   77 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~-~~~--~~~~~~~~Ds~~~~~hK~l~~P   77 (239)
                      ...+++.+..+|.||.+.+   +++|+++|++||+++++|.+|+......+. ...  ...+....+.++.+++|.++ +
T Consensus       195 ~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~  273 (420)
T 4f4e_A          195 GTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSKSFS-L  273 (420)
T ss_dssp             TCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTT-C
T ss_pred             CCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCccCc-C
Confidence            3578888889999999854   678999999999999999999765442110 100  01112236788899999976 3


Q ss_pred             cc--ceEEEe--eCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhC-----HHHHHHHHHHHHHHHHHHHH
Q 048438           78 LD--CCCLWA--TNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYG-----MENLRHFLRSHVNMARLFER  148 (239)
Q Consensus        78 ~g--~g~l~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-----~~g~~~~~~~~~~la~~l~~  148 (239)
                      .|  +|++++  .+++.+......   ................+......+....     .+.+++..++..++.+++.+
T Consensus       274 ~G~RiG~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  350 (420)
T 4f4e_A          274 YGERVGALSIITDSKDEAARVLSQ---LKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVE  350 (420)
T ss_dssp             GGGCEEEEEEECSSHHHHHHHHHH---HHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCcEEEEEEcCCHHHHHHHHHH---HHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34  677764  233322111000   0000000000000111111112222111     23456677778888999999


Q ss_pred             HHhCC---CCeEEE
Q 048438          149 LVSGD---KRFEVV  159 (239)
Q Consensus       149 ~l~~~---~g~~~~  159 (239)
                      .|++.   +++++.
T Consensus       351 ~L~~~~~~~~~~~~  364 (420)
T 4f4e_A          351 RLKAAGIERDFSFI  364 (420)
T ss_dssp             HHHHTTCSSCCTHH
T ss_pred             HHHhcCCCCCceeE
Confidence            99876   355544

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=98.56  E-value=5.3e-08  Score=83.47  Aligned_cols=80  Identities=20%  Similarity=0.106  Sum_probs=55.0

Q ss_pred             ccEEEEEecCCCCccccc---ChhHHHHHHHHhCCEEEEecccccccccCc---c--cccccCCCCCcceEEEcCcccCC
Q 048438            4 IPLFLCATIGTTAITAVD---PLKPLCDVAKQFGIWVHVDAAYAGSACIFP---E--FRHFIDGVEGADSFSLNAHKWFF   75 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~---pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~---~--~~~~~~~~~~~Ds~~~~~hK~l~   75 (239)
                      .+.+|+.+..+|.||.+.   ++++|+++|++||+++++|.+|......-.   .  ..... ....-.+++.++||.++
T Consensus       175 ~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~S~sK~~~  253 (401)
T 7aat_A          175 KSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFI-EQGIDVVLSQSYAKNMG  253 (401)
T ss_dssp             TCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHH-HTTCCCEEEEECTTTSC
T ss_pred             CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHH-hcCCcEEEEecCCcccc
Confidence            356788888999999754   488899999999999999999875433110   0  00001 11235678899999975


Q ss_pred             Cccc--ceEEEe
Q 048438           76 ATLD--CCCLWA   85 (239)
Q Consensus        76 ~P~g--~g~l~~   85 (239)
                       +.|  +|++++
T Consensus       254 -~~G~RiG~l~~  264 (401)
T 7aat_A          254 -LYGERAGAFTV  264 (401)
T ss_dssp             -CGGGCEEEEEE
T ss_pred             -cccCceEEEEE
Confidence             445  677775

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=98.52  E-value=7.1e-08  Score=82.40  Aligned_cols=150  Identities=12%  Similarity=0.050  Sum_probs=84.2

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccC--c--ccccccCCCCCcceEEEcCcccCCCc
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIF--P--EFRHFIDGVEGADSFSLNAHKWFFAT   77 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~--~--~~~~~~~~~~~~Ds~~~~~hK~l~~P   77 (239)
                      ..+++.+..+|.+|.+.|   +++|+++|++||+++++|.+|+......  +  .... +......++++.++||.++ +
T Consensus       173 ~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~s~sK~~~-~  250 (396)
T 2q7w_A          173 DVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRA-FAAMHKELIVASSYSXNFG-L  250 (396)
T ss_dssp             CEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHH-HHHHCSCEEEEEECTTTTT-C
T ss_pred             CEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHH-HHhcCCcEEEEEecccccc-c
Confidence            467777888999999866   5679999999999999999987643210  0  0110 1111124577899999875 4


Q ss_pred             cc--ceEEEe--eCcc----cccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhC--------HHHHHHHHHHHHH
Q 048438           78 LD--CCCLWA--TNPE----YLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYG--------MENLRHFLRSHVN  141 (239)
Q Consensus        78 ~g--~g~l~~--~~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g--------~~g~~~~~~~~~~  141 (239)
                      .|  +|++++  .+++    ........         .....+. ...+....+...+.        .+.+++..++..+
T Consensus       251 ~G~riG~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~-~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~  320 (396)
T 2q7w_A          251 YNERVGACTLVAADSETVDRAFSQMKAA---------IRANYSN-PPAHGASVVATILSNDALRAIWEQELTDMRQRIQR  320 (396)
T ss_dssp             GGGCCEEEEEECSSHHHHHHHHHHHHHH---------HHTTTSS-CCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHH
T ss_pred             cccccceEEEEcCCHHHHHHHHHHHHHH---------HhhccCC-CCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHH
Confidence            45  688876  2332    22111100         0000000 11222233233222        1355666677788


Q ss_pred             HHHHHHHHHhCCC---CeEEEcCCCeeEE
Q 048438          142 MARLFERLVSGDK---RFEVVFPCHFAVV  167 (239)
Q Consensus       142 la~~l~~~l~~~~---g~~~~~~~~~~iv  167 (239)
                      +.+++.+.|++..   ++++. ++..++.
T Consensus       321 ~~~~l~~~L~~~~~~~~~~~~-~~~~~~~  348 (396)
T 2q7w_A          321 MRQLFVNTLQEKGANRDFSFI-IKQNGMF  348 (396)
T ss_dssp             HHHHHHHHHHHTTCCSCCTHH-HHCCSSE
T ss_pred             HHHHHHHHHHhcCCCCCccee-cCCCceE
Confidence            8899999998863   25544 2344443

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=98.49  E-value=2e-07  Score=80.22  Aligned_cols=157  Identities=11%  Similarity=0.070  Sum_probs=84.5

Q ss_pred             ccEEEEEecCCCCcccccCh---hHHHHHHHHhCCEEEEecccccccccCc--cccc--ccCCCCCcceEEEcCcccCCC
Q 048438            4 IPLFLCATIGTTAITAVDPL---KPLCDVAKQFGIWVHVDAAYAGSACIFP--EFRH--FIDGVEGADSFSLNAHKWFFA   76 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl---~~i~~i~~~~gi~lhvD~A~~~~~~~~~--~~~~--~~~~~~~~Ds~~~~~hK~l~~   76 (239)
                      .+.+++.+..+|.||.+.+.   ++|+++|++||+++++|.+|+.....-.  ....  ...+...-..++.+++|.++.
T Consensus       183 ~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~  262 (409)
T 4eu1_A          183 GSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFGL  262 (409)
T ss_dssp             TCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTSSC
T ss_pred             CcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCCcEEEEecCcccccC
Confidence            45667777889999998885   5599999999999999999876433210  0000  011111123567789999764


Q ss_pred             c-ccceEE--EeeCcc----cccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhC-----HHHHHHHHHHHHHHHH
Q 048438           77 T-LDCCCL--WATNPE----YLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYG-----MENLRHFLRSHVNMAR  144 (239)
Q Consensus        77 P-~g~g~l--~~~~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-----~~g~~~~~~~~~~la~  144 (239)
                      | ..+|++  ++.+++    +.......       ..........+.......+++...     .+.+++..++..++.+
T Consensus       263 ~G~riG~~~~v~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  335 (409)
T 4eu1_A          263 YGHRCGALHISTASAEEAKRLVSQLALL-------IRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRK  335 (409)
T ss_dssp             GGGCCEEEEEECSSHHHHHHHHHHHHHH-------HHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCceEEEEEeCCHHHHHHHHHHHHHH-------HhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4 235666  555444    22211100       000000000011111222232110     2345667777888899


Q ss_pred             HHHHHHhCCCC----eEEEcCCCeeEEEE
Q 048438          145 LFERLVSGDKR----FEVVFPCHFAVVCF  169 (239)
Q Consensus       145 ~l~~~l~~~~g----~~~~~~~~~~iv~f  169 (239)
                      ++.+.|++. |    +++. +++.++..|
T Consensus       336 ~l~~~L~~~-g~~~~~~~~-~~~~~~~~~  362 (409)
T 4eu1_A          336 RLVSELKAC-GSVHDWSHI-ERQVGMMAY  362 (409)
T ss_dssp             HHHHHHHHT-TCCSCCHHH-HHSCSSEEE
T ss_pred             HHHHHHHhc-CCCCCccee-cCCceEEEE
Confidence            999999886 3    4433 334455444

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}

Probab=98.47  E-value=5.9e-07  Score=80.32  Aligned_cols=81  Identities=10%  Similarity=-0.039  Sum_probs=56.7

Q ss_pred             ccEEEEEecCCCCcccccChh---HHHHHHH-HhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc
Q 048438            4 IPLFLCATIGTTAITAVDPLK---PLCDVAK-QFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD   79 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~---~i~~i~~-~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g   79 (239)
                      .+-+|+++..+|.+|.+.|.+   +|+++|+ +||+++++|.+|+.........   .......+.++.+++|.++ +.|
T Consensus       244 ~~k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~~~---~~~~~~~~i~~~S~SK~~g-~~G  319 (533)
T 3f6t_A          244 SIKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFKSI---YSVVPYNTMLVYSYSKLFG-CTG  319 (533)
T ss_dssp             TEEEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCCCH---HHHSGGGEEEEEESHHHHT-CGG
T ss_pred             CCeEEEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCccCH---hhcCCCCEEEEecCcccCC-Ccc
Confidence            355677778889999998876   7888888 5899999999998543321111   1111136689999999976 445


Q ss_pred             --ceEEEeeCc
Q 048438           80 --CCCLWATNP   88 (239)
Q Consensus        80 --~g~l~~~~~   88 (239)
                        +|+++..+.
T Consensus       320 ~RiG~l~~~~~  330 (533)
T 3f6t_A          320 WRLGVIALNEK  330 (533)
T ss_dssp             GCEEEEEEESS
T ss_pred             cceEEEEECcH
Confidence              788887654

>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*

Probab=98.31  E-value=1.2e-05  Score=70.54  Aligned_cols=200  Identities=14%  Similarity=0.003  Sum_probs=105.8

Q ss_pred             ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc
Q 048438            4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD   79 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g   79 (239)
                      .+.+|++--...+.|.+.|    +++|.++|++||+.+++|..|.+.--...-+.....++. .|.++++  |.+++-..
T Consensus       226 ~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a~e~~gv~-PDivt~g--K~lggg~P  302 (456)
T 4atq_A          226 QVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEGVV-PDIITMA--KGIAGGLP  302 (456)
T ss_dssp             GEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCC-CSEEEEC--GGGGTTSS
T ss_pred             ceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCccccccccccCCC-Cchhhhh--hcccCcCC
Confidence            3456666555566677766    899999999999999999998874222221221134554 9999886  77766566


Q ss_pred             ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC----CC
Q 048438           80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD----KR  155 (239)
Q Consensus        80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~----~g  155 (239)
                      .|.+..++ +.........      ...++ .+.+.......++|+.+..+++   .++..++.+++.++|+++    +.
T Consensus       303 ~~av~~~~-~i~~~~~~~~------~~~Tf-~gnpla~aaala~L~~i~~~~l---~~~~~~~g~~l~~~L~~l~~~~~~  371 (456)
T 4atq_A          303 LSAITGRA-DLLDAVHPGG------LGGTY-GGNPVACAAALAAIDTMEQHDL---NGRARHIEELALGKLRELAAELSA  371 (456)
T ss_dssp             CEEEEEEH-HHHTTSCTTS------SCCSS-SSCHHHHHHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred             ceeeEecH-HHHhcccccC------CCCCC-CCChHHHHhhHHHHHHHhhccH---HHHHHHHHHHHHHHHHHHHHhccc
Confidence            77777754 3222221100      00111 1222222333344555544444   334446666666666542    11


Q ss_pred             --eEEEcCCC--eeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEec
Q 048438          156 --FEVVFPCH--FAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATG  231 (239)
Q Consensus       156 --~~~~~~~~--~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~  231 (239)
                        -.++.+.+  --++.+.+..+...            ..+    .++..++.+.+.++|.+.... . ....+||+++-
T Consensus       372 ~~~~~v~~VRG~Gl~~giel~~~~~~------------~~~----~~~~~~v~~~~~~~Gvl~~~~-g-~~~~~irl~Pp  433 (456)
T 4atq_A          372 GGGSVVGDIRGRGAMLAIELVQPGSK------------EPN----AELTKAVAAACLKEGVIILTC-G-TYGNVIRLLPP  433 (456)
T ss_dssp             ----CEEEEEEETTEEEEEEBCTTSC------------CBC----HHHHHHHHHHHHHTTEECEEE-C-TTSCEEEECCC
T ss_pred             ccCCceEEeeecceEEEEEEecCCCC------------CcC----HHHHHHHHHHHHHCCCEEEec-C-CCCCEEEEECC
Confidence              12222211  12555665432110            011    345567888888888765432 1 12357898854


Q ss_pred             CCCC
Q 048438          232 ATLT  235 (239)
Q Consensus       232 ~~~t  235 (239)
                      --.|
T Consensus       434 L~it  437 (456)
T 4atq_A          434 LVIS  437 (456)
T ss_dssp             TTCC
T ss_pred             CCCC
Confidence            3333

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=97.50  E-value=1.9e-07  Score=82.09  Aligned_cols=159  Identities=9%  Similarity=-0.055  Sum_probs=84.8

Q ss_pred             ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc
Q 048438            4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD   79 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g   79 (239)
                      .+.+|++....+++|.+.|    +++|.++|++||+++++|.+|+ +. ....+.....++ ..|.+  ++.|++++...
T Consensus       233 ~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r-~g~~~a~~~~gv-~pDi~--t~sK~lg~G~p  307 (465)
T 2yky_A          233 DCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SR-LSGGGAQEMLGI-SADLT--TLGKYIGGGMS  307 (465)
Confidence            3445555555556898877    9999999999999999999998 42 111000001232 26765  46799987555


Q ss_pred             ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC-CeEE
Q 048438           80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK-RFEV  158 (239)
Q Consensus        80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~-g~~~  158 (239)
                      .|+++.++ +.+........... ....++ .+.+....+..++++.+..+   +..++..++.++++++|+++. ...+
T Consensus       308 iG~v~~~~-~i~~~l~~~~~g~~-~~~~T~-~~npla~aAa~aaL~~l~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~  381 (465)
T 2yky_A          308 FGAFGGRR-DLMERFDPARDGAF-AHAGTF-NNNILTMSAGHAALTQIYTR---QAASDLSASGDRFRANLNRIAVENQA  381 (465)
Confidence            77766543 34332221000000 000111 11122222333345544333   345566688888888887642 1222


Q ss_pred             E--cCCCeeEEEEEEcC
Q 048438          159 V--FPCHFAVVCFRVSP  173 (239)
Q Consensus       159 ~--~~~~~~iv~f~~~~  173 (239)
                      .  .+...+++.|.+.+
T Consensus       382 ~~~v~g~G~~~~i~~~~  398 (465)
T 2yky_A          382 PLQFTGLGSLGTIHFSR  398 (465)
Confidence            1  12345577776653

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=98.00  E-value=5.1e-05  Score=66.40  Aligned_cols=136  Identities=10%  Similarity=0.035  Sum_probs=76.0

Q ss_pred             cEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438            5 PLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC   80 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~   80 (239)
                      ..+|++--...+.|.+.|    +++|.++|++||++|++|.+|.+  -....+.....++. .|.++++  |.+++-...
T Consensus       221 iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tG--R~G~~~a~e~~gv~-PDi~t~g--K~lggG~Pi  295 (454)
T 4ao9_A          221 IAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTS--RLAPHGLANKLGIR-SDLTTLG--KYIGGGMSF  295 (454)
T ss_dssp             EEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGG--GGSTTCHHHHHTCC-CSEEEEE--GGGGTTSSC
T ss_pred             eEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCcC--CCccccchhccCCC-CcEEEec--cccCCCCcc
Confidence            445655555567788888    99999999999999999999874  11111111123554 8988765  766665567


Q ss_pred             eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhC
Q 048438           81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSG  152 (239)
Q Consensus        81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~  152 (239)
                      |.+..++ +.............  ...++ .+.+....+..++|+.+..++   ..++..++.++|+++|++
T Consensus       296 ga~~~~~-ei~~~~~~~~~~~~--h~~T~-~gnPla~AAala~L~~l~~~~---~~~~~~~~g~~l~~~L~~  360 (454)
T 4ao9_A          296 GAFGGRA-DVMALFDPRTGPLA--HSGTF-NNNVMTMAAGYAGLTKLFTPE---AAGALAERGEALRARLNA  360 (454)
T ss_dssp             EEEEECH-HHHGGGCTTTCSCC--CCCTT-TTCHHHHHHHHHHHHHTSCHH---HHHHHHHHHHHHHHHHHH
T ss_pred             eeeeeHH-HHHHHHhhccCCcc--ccCCC-CCCHHHHHHHHHHHHHHhccC---hhHHHHHHHHHHHHHHHH
Confidence            7777654 33332211100000  00111 111222233334566654443   344455777777777765

>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A

Probab=97.86  E-value=1.5e-05  Score=70.13  Aligned_cols=80  Identities=13%  Similarity=0.032  Sum_probs=53.5

Q ss_pred             cEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-cc
Q 048438            5 PLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-LD   79 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g   79 (239)
                      ..+|++--....-|.+.|    +++|.++|++||+.|++|..+.+.--...-+.....++. .|.++++  |.+++- ..
T Consensus       237 iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~-PDi~t~~--K~l~gG~~P  313 (473)
T 4e3q_A          237 IAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYDFT-PDAIISS--KNLTAGFFP  313 (473)
T ss_dssp             EEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTSSSCHHHHTTCC-CSEEEEC--GGGGTTSSC
T ss_pred             eEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCcccchhHHHhcCCC-CChHHhc--ccccCCCCC
Confidence            455666555566677666    899999999999999999998875322221111133554 8998765  877543 45


Q ss_pred             ceEEEeeC
Q 048438           80 CCCLWATN   87 (239)
Q Consensus        80 ~g~l~~~~   87 (239)
                      .|.+++++
T Consensus       314 l~av~~~~  321 (473)
T 4e3q_A          314 MGAVILGP  321 (473)
T ss_dssp             CEEEEECH
T ss_pred             cccccccH
Confidence            67777754

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=97.66  E-value=4.3e-05  Score=71.70  Aligned_cols=80  Identities=16%  Similarity=-0.032  Sum_probs=49.7

Q ss_pred             cEEEEEecC-CCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-c
Q 048438            5 PLFLCATIG-TTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-L   78 (239)
Q Consensus         5 p~~vv~t~g-tt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~   78 (239)
                      +.+|++--. ....|.+.|    +++|.++|++||+++++|.+|.+.-.....+.....++. .|.++  +.|.|++- .
T Consensus       595 iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~-PDiit--lsK~L~gG~~  671 (831)
T 4a0g_A          595 VGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCK-PDIAC--FAKLLTGGMV  671 (831)
T ss_dssp             EEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHHSSC-CSEEE--ECGGGGTTSS
T ss_pred             EEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCchhhHhcCCC-CcEEE--EecccccCcc
Confidence            344544443 455677665    899999999999999999987753221111111123443 78775  56988652 2


Q ss_pred             cceEEEeeC
Q 048438           79 DCCCLWATN   87 (239)
Q Consensus        79 g~g~l~~~~   87 (239)
                      ..|+++.++
T Consensus       672 Plgav~~~~  680 (831)
T 4a0g_A          672 PLAVTLATD  680 (831)
T ss_dssp             CCEEEEECH
T ss_pred             CcEEEEECH
Confidence            357777654

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*

Probab=97.55  E-value=0.00015  Score=62.79  Aligned_cols=132  Identities=11%  Similarity=-0.031  Sum_probs=73.2

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ceE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCC   82 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~   82 (239)
                      +-+|+++..+|.+|.+.+ + +   ++  ++..+.|.++......+-   . +.  ...|+++.+++|.++ +.|  +|+
T Consensus       197 ~k~v~l~~p~NPtG~~~~-~-~---l~--~~~~i~d~~~~~~~~s~~---~-~~--~~~~i~~~S~SK~~g-~~G~RiG~  262 (427)
T 2hox_A          197 QYIEMVTSPNNPEGLLRH-A-V---IK--GCKSIYDMVYYWPHYTPI---K-YK--ADEDILLFTMSKFTG-HSGSRFGW  262 (427)
T ss_dssp             GEEEEEESSCTTTCCCCC-C-S---ST--TCEEEEECTTCSTTTSCC---C-SC--BCCSEEEEEHHHHTS-CGGGCCEE
T ss_pred             ceEEEEcCCCCCcccccH-H-H---Hc--CCCEEEeecccCCCCCcc---c-cC--CCceEEEEeChhcCC-CCCceEEE
Confidence            556777888999999988 4 2   33  678888887642111110   0 11  237899999999875 445  788


Q ss_pred             EEeeCcccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHh---------C-HHHHHHHHHHHHHHHHHHHHHHh
Q 048438           83 LWATNPEYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNY---------G-MENLRHFLRSHVNMARLFERLVS  151 (239)
Q Consensus        83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~---------g-~~g~~~~~~~~~~la~~l~~~l~  151 (239)
                      +++.+++.+......       .... ..+.. +....+..+++..         + .+-+++..++..+..+++.+.|+
T Consensus       263 ~~~~~~~l~~~l~~~-------~~~~-~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~  334 (427)
T 2hox_A          263 ALIKDESVYNNLLNY-------MTKN-TEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLD  334 (427)
T ss_dssp             EEECCHHHHHHHHHH-------HHHH-TSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEECCHHHHHHHHHH-------HHhc-CCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            887544443322110       0000 00101 1111122223221         0 11233455666778889999999


Q ss_pred             CCCCeEE
Q 048438          152 GDKRFEV  158 (239)
Q Consensus       152 ~~~g~~~  158 (239)
                      +.+|+++
T Consensus       335 ~~~g~~~  341 (427)
T 2hox_A          335 QSDRFSY  341 (427)
T ss_dssp             TSSSEEC
T ss_pred             hCcCccc
Confidence            8888876

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*

Probab=97.14  E-value=0.001  Score=59.52  Aligned_cols=81  Identities=12%  Similarity=0.065  Sum_probs=55.4

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHH--HHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-c
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVA--KQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-L   78 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~--~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~   78 (239)
                      +-+|+++..+|.||.+.+   +++|.++|  +++|+++++|.+|+.......   .........++++.|++|.++.| .
T Consensus       246 ~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~---s~~~~~~~~~i~~~S~SK~~g~~Gl  322 (546)
T 2zy4_A          246 IKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQ---SLFAICPENTLLVYSFSKYFGATGW  322 (546)
T ss_dssp             EEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCC---CHHHHCGGGEEEEEESTTTTTCGGG
T ss_pred             CeEEEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhcccCc---CHHHhCCCCEEEEEeCccccCCCCc
Confidence            456667788899999887   56678888  789999999999986542111   11110112678899999997644 2


Q ss_pred             cceEEEeeCc
Q 048438           79 DCCCLWATNP   88 (239)
Q Consensus        79 g~g~l~~~~~   88 (239)
                      -+|+++..+.
T Consensus       323 RiG~~~~~~~  332 (546)
T 2zy4_A          323 RLGVVAAHQQ  332 (546)
T ss_dssp             CEEEEEEESS
T ss_pred             ceEEEEECCH
Confidence            2688887553

>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0

Probab=91.59  E-value=0.19  Score=42.97  Aligned_cols=78  Identities=15%  Similarity=0.057  Sum_probs=48.2

Q ss_pred             EEEEec-CCCCcccccC---hhHHHHHHHHhCCEEEEeccccccccc-Ccc----cccccCCCCCcceEEEcCcccCCCc
Q 048438            7 FLCATI-GTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACI-FPE----FRHFIDGVEGADSFSLNAHKWFFAT   77 (239)
Q Consensus         7 ~vv~t~-gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~-~~~----~~~~~~~~~~~Ds~~~~~hK~l~~P   77 (239)
                      +|+++. .+|.||.+.+   +++|+++|++|+++++.|.+|...... .+.    .+.+... ..-=.++.++.|.++.|
T Consensus       176 ~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~l~  254 (405)
T 3k7y_A          176 SVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEK-NIAFSVCQSFSKNMSLY  254 (405)
T ss_dssp             EEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTT-TCCEEEEEECTTTSCCT
T ss_pred             EEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhc-CCcEEEEeeCCccCCCc
Confidence            455544 4799999766   566888899999999999998643221 000    0111111 11125567999998633


Q ss_pred             -ccceEEEe
Q 048438           78 -LDCCCLWA   85 (239)
Q Consensus        78 -~g~g~l~~   85 (239)
                       .-+|.+++
T Consensus       255 GlRiG~~~~  263 (405)
T 3k7y_A          255 GERAGALHI  263 (405)
T ss_dssp             TTTEEEEEE
T ss_pred             cccceEEEE
Confidence             44677653

>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}

Probab=90.53  E-value=0.4  Score=41.23  Aligned_cols=81  Identities=14%  Similarity=0.023  Sum_probs=51.5

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccC---ccc--ccccCCCCCcceEEEcCcccCCC
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIF---PEF--RHFIDGVEGADSFSLNAHKWFFA   76 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~---~~~--~~~~~~~~~~Ds~~~~~hK~l~~   76 (239)
                      ..+++.+...|.||...+   +++|+++|++++++++.|.++......-   +.+  +...+. ..-=.++.++.|.++.
T Consensus       191 ~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~s~SK~~~~  269 (420)
T 4h51_A          191 SVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARR-GIEVLLAQSFSKNMGL  269 (420)
T ss_dssp             CEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHT-TCCCEEEEECTTTSCC
T ss_pred             cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhh-CceEEEEecccccccc
Confidence            456667777899999655   6788999999999999999986543211   000  000111 1122456799998665


Q ss_pred             cc-cceEEEee
Q 048438           77 TL-DCCCLWAT   86 (239)
Q Consensus        77 P~-g~g~l~~~   86 (239)
                      +. -+|.+.+.
T Consensus       270 ~G~RvG~~~~~  280 (420)
T 4h51_A          270 YSERAGTLSLL  280 (420)
T ss_dssp             GGGCEEEEEEE
T ss_pred             ccCceEEEEec
Confidence            42 26777663

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	239
d1js3a_	476	c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa)	1e-51
d1pmma_	450	c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {	5e-17
d2z67a1	434	c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (	2e-16
d3bc8a1	445	c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase	7e-15
d1c7ga_	456	c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbi	5e-04
d2v1pa1	467	c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptop	5e-04

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} Length = 476

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  172 bits (436), Expect = 1e-51
 Identities = 97/250 (38%), Positives = 132/250 (52%), Gaps = 33/250 (13%)

Query: 1   AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGV 60
           AGLIP F+ AT+GTT+  + D L  +  +  +  IW+HVDAAYAGSA I PEFRH ++GV
Sbjct: 232 AGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGV 291

Query: 61  EGADSFSLNAHKWFFATLDCCCLW-----------ATNPEYLKNKATESKPVVDYKDWQI 109
           E ADSF+ N HKW     DC  +W             +P YLK+    S  + DY+ WQ+
Sbjct: 292 EFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQL 351

Query: 110 TLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCF 169
            L R FRSLK+WFV R YG++ L+ ++R HV ++  FE  V  D RFEV       +VCF
Sbjct: 352 PLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCF 411

Query: 170 RVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFA 229
           R+                         +  N  LLE IN++ K ++    L G + +RFA
Sbjct: 412 RLKG----------------------SDGLNEALLERINSARKIHLVPCRLRGQFVLRFA 449

Query: 230 TGATLTEERH 239
             +   E  H
Sbjct: 450 ICSRKVESGH 459

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} Length = 450

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

 Score = 77.2 bits (189), Expect = 5e-17
 Identities = 32/183 (17%), Positives = 55/183 (30%), Gaps = 14/183 (7%)

Query: 5   PLFLCATIGTTAITAVDPLKPLCDV------AKQFGIWVHVDAAYAGSACIFP-EFRHFI 57
            + +  T G T     +  +PL D            I +H+DAA  G    F      + 
Sbjct: 200 TIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWD 259

Query: 58  DGVEGADSFSLNAHKWFFATLDCCCLWATNPEYLKN--KATESKPVVDYKDWQITLSRSF 115
             +    S S + HK+  A L C  +   + E L                 + I  SR  
Sbjct: 260 FRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPA 319

Query: 116 RSLKLWFVIRNY-GMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFA----VVCFR 170
             +   +      G E       +   +A      ++    +E +           VCF+
Sbjct: 320 GQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFK 379

Query: 171 VSP 173
           +  
Sbjct: 380 LKD 382

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} Length = 434

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

 Score = 75.3 bits (184), Expect = 2e-16
 Identities = 21/181 (11%), Positives = 57/181 (31%), Gaps = 9/181 (4%)

Query: 5   PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGAD 64
              + +T+        D +  +  + + + I   ++ AYA     + E           D
Sbjct: 212 RPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKA-FKYRVD 270

Query: 65  SFSLNAHKWFFATLDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVI 124
           +   ++ K     +    +++T+ E++K  +            + + +    +L     +
Sbjct: 271 AVVSSSDKNLLTPIGGGLVYSTDAEFIKEISL-------SYPGRASATPVVNTLVSLLSM 323

Query: 125 RNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCFRVSPLPV-LMDKLKT 183
            +     L    ++   +       +S     + +        C  V+  PV +  KL  
Sbjct: 324 GSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVESPIASCISVNSDPVEIAAKLYN 383

Query: 184 K 184
            
Sbjct: 384 L 384

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} Length = 445

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.1 bits (173), Expect = 7e-15
 Identities = 32/239 (13%), Positives = 68/239 (28%), Gaps = 16/239 (6%)

Query: 5   PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGAD 64
            L L +T    A    D L+ L  +   + I   V+ AY   +            V   D
Sbjct: 195 ILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRID 254

Query: 65  SFSLNAHKWFFATLDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVI 124
           +F  +  K F   +    +   N  +++          D        + +  SL +   +
Sbjct: 255 AFVQSLDKNFMVPVGGAIIAGFNEPFIQ----------DISKMYPGRASASPSLDVLITL 304

Query: 125 RNYGMENLRHFLRSHVNMARLF-ERLVSGDKRFEVVF---PCHFAVVCFRVSPLPVLMDK 180
            + G    R  L+    M      +L    +         P +   +   +  +    DK
Sbjct: 305 LSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDK 364

Query: 181 LKTKYENCLLSEEEQINEFNRELLESINASGK--AYMTNVVLGGIYAIRFATGATLTEE 237
             T+  + L + +               +      +M++        +  A    +  +
Sbjct: 365 AVTQLGSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQ 423

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} Length = 456

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

 Score = 38.6 bits (89), Expect = 5e-04
 Identities = 19/158 (12%), Positives = 46/158 (29%), Gaps = 13/158 (8%)

Query: 3   LIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRH------- 55
            I L +   +      ++  ++ + ++A  +GI +  DA        F + +        
Sbjct: 177 YICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVS 236

Query: 56  ----FIDGVEGADSFSLNAHKWFFATLDCCCLWATNPEYLKNKATESKPVVDYKDWQITL 111
                 +    AD  +++  K     +        N E + + A E   V +       L
Sbjct: 237 IKDIVHEMFSYADGCTMSGKKDCLVNIGGFLC--MNDEEMFSAAKELVVVYEGMPSYGGL 294

Query: 112 SRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERL 149
           +          +      E + H ++    +       
Sbjct: 295 AGRDMEAMAIGLREAMQYEYIEHRVKQVRYLGDKLREA 332

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} Length = 467

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

 Score = 38.4 bits (88), Expect = 5e-04
 Identities = 20/145 (13%), Positives = 45/145 (31%), Gaps = 15/145 (10%)

Query: 20  VDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF-----------IDGVEGADSFSL 68
           +  LK +  +AK++ I V +D+A       F + R              +  + AD  ++
Sbjct: 203 LANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAM 262

Query: 69  NAHKWFFATLDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYG 128
           +A K          L     +   +  TE + +   ++             +  +     
Sbjct: 263 SAKKDAMVP--MGGLLCMKDDSFFDVYTECRTLCVVQEG-FPTYGGLEGGAMERLAVGLY 319

Query: 129 MENLRHFLRSHV-NMARLFERLVSG 152
                 +L   +  +  L + L   
Sbjct: 320 DGMNLDWLAYRIAQVQYLVDGLEEI 344

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	239
d1js3a_	476	DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]	100.0
d1pmma_	450	Glutamate decarboxylase beta, GadB {Escherichia co	100.0
d1jf9a_	405	NifS-like protein/selenocysteine lyase {Escherichi	99.89
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	99.89
d1t3ia_	408	Probable cysteine desulfurase SufS {Synechocystis	99.89
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	99.84
d1m32a_	361	2-aminoethylphosphonate transaminase {Salmonella t	99.84
d1qz9a_	404	Kynureninase {Pseudomonas fluorescens [TaxId: 294]	99.83
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	99.82
d2bkwa1	382	Alanine-glyoxylate aminotransferase {Baker's yeast	99.81
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	99.79
d1vjoa_	377	Alanine-glyoxylate aminotransferase {Cyanobacteria	99.76
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	99.73
d1iuga_	348	Subgroup IV putative aspartate aminotransferase {T	99.72
d2ch1a1	388	3-hydroxykynurenine transaminase {Malaria mosquito	99.69
d1eg5a_	376	NifS-like protein/selenocysteine lyase {Thermotoga	99.68
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	99.65
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	99.58
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	99.57
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	99.56
d1c4ka2	462	Ornithine decarboxylase major domain {Lactobacillu	99.5
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	99.49
d1w23a_	360	Phosphoserine aminotransferase, PSAT {Bacillus alc	99.36
d2c0ra1	361	Phosphoserine aminotransferase, PSAT {Bacillus cir	99.34
d1bjna_	360	Phosphoserine aminotransferase, PSAT {Escherichia	99.27
d1svva_	340	Low-specificity threonine aldolase {Leishmania maj	99.18
d1dfoa_	416	Serine hydroxymethyltransferase {Escherichia coli	99.15
d2a7va1	463	Serine hydroxymethyltransferase {Human (Homo sapie	99.09
d1kl1a_	405	Serine hydroxymethyltransferase {Bacillus stearoth	99.08
d1rv3a_	470	Serine hydroxymethyltransferase {Rabbit (Oryctolag	99.04
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	99.01
d1ibja_	380	Cystathionine beta-lyase, CBL {Thale cress (Arabid	99.0
d1qgna_	398	Cystathionine gamma-synthase, CGS {Common tobacco	98.98
d1y4ia1	397	Methionine gamma-lyase, MGL {Citrobacter freundii	98.96
d1lc5a_	355	L-threonine-O-3-phosphate decarboxylase CobD {Salm	98.96
d1cs1a_	384	Cystathionine gamma-synthase, CGS {Escherichia col	98.95
d1wyua1	437	Glycine dehydrogenase (decarboxylating) subunit 1	98.95
d2aeua1	366	Hypothetical protein MJ0158 {Archaeon Methanococcu	98.94
d1gc0a_	392	Methionine gamma-lyase, MGL {Pseudomonas putida [T	98.94
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	98.83
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	98.73
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	98.73
d2ctza1	421	O-acetyl-L-homoserine sulfhydrylase {Thermus therm	98.73
d1j32a_	388	Aspartate aminotransferase, AAT {Phormidium lapide	98.68
d1n8pa_	393	Cystathionine gamma-lyase (CYS3) {Baker's yeast (S	98.68
d1b9ha_	384	3-amino-5-hydroxybenzoic acid synthase (AHBA synth	98.66
d1mdoa_	376	Aminotransferase ArnB {Salmonella typhimurium [Tax	98.66
d1cl1a_	391	Cystathionine beta-lyase, CBL {Escherichia coli [T	98.65
d1iaya_	428	1-aminocyclopropane-1-carboxylate synthase (ACC sy	98.65
d1pffa_	331	Methionine gamma-lyase, MGL {Trichomonas vaginalis	98.65
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	98.62
d1d2fa_	361	Modulator in mal gene expression, MalY {Escherichi	98.6
d1b5pa_	382	Aspartate aminotransferase, AAT {Thermus thermophi	98.57
d1e5ea_	394	Methionine gamma-lyase, MGL {Trichomonas vaginalis	98.54
d1m7ya_	431	1-aminocyclopropane-1-carboxylate synthase (ACC sy	98.53
d2fnua1	371	Spore coat polysaccharide biosynthesis protein C {	98.46
d2gb3a1	389	AAT homologue TM1698 {Thermotoga maritima [TaxId:	98.45
d1wsta1	403	Multiple substrate aminotransferase, MSAT {Thermoc	98.44
d1gdea_	388	Aromatic aminoacid aminotransferase, AroAT {Archae	98.44
d1wyub1	471	Glycine dehydrogenase subunit 2 (P-protein) {Therm	98.38
d1vp4a_	420	Putative aminotransferase TM1131 {Thermotoga marit	98.37
d1bw0a_	412	Tyrosine aminotransferase (TAT) {Trypanosoma cruzi	98.36
d1z7da1	404	Ornithine aminotransferase {Plasmodium yoelii yoel	98.33
d1c7na_	394	Cystalysin {Treponema denticola [TaxId: 158]}	98.3
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	98.23
d1o4sa_	375	Aspartate aminotransferase, AAT {Thermotoga mariti	98.22
d1sffa_	425	4-aminobutyrate aminotransferase, GABA-aminotransf	98.19
d1xi9a_	395	Putative alanine aminotransferase {Pyrococcus furi	98.17
d1o69a_	374	Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam	98.16
d2f8ja1	334	Histidinol-phosphate aminotransferase HisC {Thermo	98.07
d1w7la_	418	Kynurenine--oxoglutarate transaminase I {Human (Ho	98.04
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	98.04
d1fg7a_	354	Histidinol-phosphate aminotransferase HisC {Escher	98.04
d1ohwa_	461	4-aminobutyrate aminotransferase, GABA-aminotransf	98.01
d1zoda1	431	Dialkylglycine decarboxylase {Pseudomonas cepacia	97.9
d1s0aa_	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	97.82
d2gsaa_	427	Glutamate-1-semialdehyde aminomutase (aminotransfe	97.77
d2r5ea1	418	Kynurenine--oxoglutarate transaminase I {Yellowfev	97.76
d1u08a_	382	Putative methionine aminotransferase YdbL {Escheri	97.58
d2q7wa1	396	Aspartate aminotransferase, AAT {Escherichia coli	95.09
d1yaaa_	412	Aspartate aminotransferase, AAT {Baker's yeast (Sa	94.93
d1ajsa_	412	Aspartate aminotransferase, AAT {Pig (Sus scrofa),	94.82
d7aata_	401	Aspartate aminotransferase, AAT {Chicken (Gallus g	94.58
d2ay1a_	394	Aromatic aminoacid aminotransferase, AroAT {Paraco	93.34
d2hoxa1	425	Alliinase {Garlic (Allium sativum) [TaxId: 4682]}	93.29
d3tata_	397	Aromatic aminoacid aminotransferase, AroAT {Escher	90.76
d1mxga2	361	Bacterial alpha-amylase {Archaeon Pyrococcus woese	80.85

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=1.6e-48  Score=342.97  Aligned_cols=217  Identities=43%  Similarity=0.805  Sum_probs=196.6

Q ss_pred             CCCccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438            1 AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC   80 (239)
Q Consensus         1 ~g~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~   80 (239)
                      +|+.|++||+|+|||.+|.+|||++|+++|++||+|+|||||||+.++++++++..++++++|||+++|+|||+++|++|
T Consensus       232 ~g~~p~~VvataGtt~~G~iDpl~~I~~i~~~~~~wlHVDAA~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~P~~~  311 (476)
T d1js3a_         232 AGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDC  311 (476)
T ss_dssp             TTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSC
T ss_pred             cCCCcEEEeecCCCccceeeccHHHHHHHHHhcCcEEEEecccchhhhhhcchhhhhcCCcccceeeecCccccccCCcc
Confidence            58899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEeeCccccccc-----------ccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Q 048438           81 CCLWATNPEYLKNK-----------ATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERL  149 (239)
Q Consensus        81 g~l~~~~~~~l~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~  149 (239)
                      |+++++++..+...           ........++.+++++++|+++++++|.+++.+|.+|+++++++..++++++.+.
T Consensus       312 g~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~al~lw~~l~~~G~~g~~~~i~~~~~lA~~l~~~  391 (476)
T d1js3a_         312 SAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAF  391 (476)
T ss_dssp             EEEEESCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeecccchHHHHHHHhcChhhhccccccccccccccccccccchhhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Confidence            99999875333221           1112223456678999999999999999999999999999999999999999999


Q ss_pred             HhCCCCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEE
Q 048438          150 VSGDKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFA  229 (239)
Q Consensus       150 l~~~~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~  229 (239)
                      |++.|+|+++.+|.+|+|||++++.                      +.+|+++.++|+++|.++++++.++|+.+||++
T Consensus       392 l~~~~~fel~~~p~l~iV~Fr~~~~----------------------d~~n~~l~~~l~~~G~~~~s~t~~~g~~~lR~~  449 (476)
T d1js3a_         392 VLQDPRFEVCAEVTLGLVCFRLKGS----------------------DGLNEALLERINSARKIHLVPCRLRGQFVLRFA  449 (476)
T ss_dssp             HHHCTTEEECSCCCSSEEEEEESSC----------------------HHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEE
T ss_pred             HhcCCCeEEECCCceEEEEEEccCC----------------------hHHHHHHHHHHHhcCCEEEeeeeECCEEEEEEE
Confidence            9999999999999999999999864                      678889999999999999999999999999999


Q ss_pred             ecCCCCCcCC
Q 048438          230 TGATLTEERH  239 (239)
Q Consensus       230 ~~~~~t~~~~  239 (239)
                      ++||+|+++|
T Consensus       450 i~n~~Tt~~d  459 (476)
T d1js3a_         450 ICSRKVESGH  459 (476)
T ss_dssp             CCCTTCCHHH
T ss_pred             eCCCCCCHHH
Confidence            9999999875

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.2e-33  Score=246.36  Aligned_cols=216  Identities=17%  Similarity=0.167  Sum_probs=166.3

Q ss_pred             CccEEEEEecCCCCcccccChhHHHHHH------HHhCCEEEEecccccccccCcc-cccccCCCCCcceEEEcCcccCC
Q 048438            3 LIPLFLCATIGTTAITAVDPLKPLCDVA------KQFGIWVHVDAAYAGSACIFPE-FRHFIDGVEGADSFSLNAHKWFF   75 (239)
Q Consensus         3 ~~p~~vv~t~gtt~~G~i~pl~~i~~i~------~~~gi~lhvD~A~~~~~~~~~~-~~~~~~~~~~~Ds~~~~~hK~l~   75 (239)
                      ..+++|++++|||.+|.+||+++|+++|      +++|+|+|||||++++.+++.. .+....++++|||+++|+|||++
T Consensus       198 ~~t~~Vv~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p~~~~~~~~~~~~~~aDSi~~s~HK~~~  277 (450)
T d1pmma_         198 ENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGL  277 (450)
T ss_dssp             TTEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTC
T ss_pred             hCceEEEeeeeeccCCCccccchhhHHHHHHHHHhccCcEEEeehhhccceeeeechhhhhhhcccceeEeecChhhccC
Confidence            4578999999999999999999998886      4579999999999998876643 34456678889999999999999


Q ss_pred             CcccceEEEeeCcccccccccCCCCc--cCCCCceecCCCCC-ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhC
Q 048438           76 ATLDCCCLWATNPEYLKNKATESKPV--VDYKDWQITLSRSF-RSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSG  152 (239)
Q Consensus        76 ~P~g~g~l~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~  152 (239)
                      +|+|||+++++++..+.........+  .++..++++++|+. .++++|..++.+|.+|+++++++..+++++|.++|++
T Consensus       278 ~p~g~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~~~~~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~  357 (450)
T d1pmma_         278 APLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAK  357 (450)
T ss_dssp             CCSSCEEEEESSGGGSCGGGCEEEEETTEEEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCeeEEEecChhhhhhhcccccCcCCCCcCCCcccCccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999876654432111111  12234577788875 4567999999999999999999999999999999999


Q ss_pred             CCCeEEEcC----CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEE---ECCEeE
Q 048438          153 DKRFEVVFP----CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVV---LGGIYA  225 (239)
Q Consensus       153 ~~g~~~~~~----~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~---~~g~~~  225 (239)
                      .++++++.+    +..++|||++++.....            -     +  ...+.++|.++|....+++.   ..+..+
T Consensus       358 ~~~~el~~~~~p~~~l~~V~Fr~~~~~~~~------------~-----~--~~~l~~~L~~~Gw~v~~~~~p~~~~~~~~  418 (450)
T d1pmma_         358 LGPYEFICTGRPDEGIPAVCFKLKDGEDPG------------Y-----T--LYDLSERLRLRGWQVPAFTLGGEATDIVV  418 (450)
T ss_dssp             TSCEEEEEECCTTTBSSEEEEEECTTCCCS------------S-----C--HHHHHHHHHTTTCBCCEEECCTTCTTCEE
T ss_pred             CCCeEEEeCCCCCCceEEEEEecCCcccCC------------C-----C--HHHHHHHHHHcCCeeeccCcCCCcCCcEE
Confidence            999999864    45789999998643110            0     1  11456778888977555443   345689


Q ss_pred             EEEEecCCCCCc
Q 048438          226 IRFATGATLTEE  237 (239)
Q Consensus       226 lR~~~~~~~t~~  237 (239)
                      +|+++++..|.+
T Consensus       419 lRvvv~~~~t~e  430 (450)
T d1pmma_         419 MRIMCRRGFEMD  430 (450)
T ss_dssp             EEEECCTTCCHH
T ss_pred             EEEEccCCCCHH
Confidence            999988776653

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=8.2e-23  Score=175.50  Aligned_cols=202  Identities=14%  Similarity=0.128  Sum_probs=139.4

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL   83 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l   83 (239)
                      .+.+|++++.++.+|.+.|+++|+++||++|+++||||+|+.|.++++     +..+ ++|++++++||| ++|.|+|++
T Consensus       163 ~t~lv~~~~v~~~tG~~~pi~~i~~~~~~~g~~~~vD~~q~~g~~~id-----~~~~-~~D~~~~s~hK~-~Gp~G~g~l  235 (405)
T d1jf9a_         163 KTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVD-----VQAL-DCDFYVFSGHKL-YGPTGIGIL  235 (405)
T ss_dssp             TEEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCC-----HHHH-TCSEEEEEGGGT-TSCSSCEEE
T ss_pred             CcEEEEEecCCCcccccCchHHhhhHHHHcCCeeecccceeccccccc-----hhhc-CCceeecccccc-ccCCCceee
Confidence            467999999999999999999999999999999999999999999887     4333 399999999999 579999999


Q ss_pred             EeeCcccccccccCCCC-------------ccCCCCceecCCCC-C-ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Q 048438           84 WATNPEYLKNKATESKP-------------VVDYKDWQITLSRS-F-RSLKLWFVIRNYGMENLRHFLRSHVNMARLFER  148 (239)
Q Consensus        84 ~~~~~~~l~~~~~~~~~-------------~~~~~~~~~~~~~~-~-~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~  148 (239)
                      |+++ +.+....+....             ........++.|++ + ..+++..+++.+...+++++.++...|++++.+
T Consensus       236 ~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~L~~~~~~  314 (405)
T d1jf9a_         236 YVKE-ALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALS  314 (405)
T ss_dssp             EECH-HHHTTCCCSSCSSSSEEECCTTTCCEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             eech-hhhcccCcccccccccCccccccccccccchhhhcCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHh
Confidence            9964 332221110000             00001122333333 1 224445556655455667777788899999999


Q ss_pred             HHhCCCCeEEEcCC-CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEE--------
Q 048438          149 LVSGDKRFEVVFPC-HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVV--------  219 (239)
Q Consensus       149 ~l~~~~g~~~~~~~-~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~--------  219 (239)
                      .++..+...+..+. ..++++|.+++...                    .    .+.+.|.+.|. .+....        
T Consensus       315 ~l~~~~~~~~~~~~~r~~ivsf~~~~~~~--------------------~----~~~~~L~~~gI-~v~~G~~c~~~~~~  369 (405)
T d1jf9a_         315 QLESVPDLTLYGPQNRLGVIAFNLGKHHA--------------------Y----DVGSFLDNYGI-AVRTGHHCAMPLMA  369 (405)
T ss_dssp             HHTTSTTEEEESCTTCCSEEEEEETTCCH--------------------H----HHHHHHHHTTE-ECEEECTTCHHHHH
T ss_pred             hhhcCCcccccCCcCcCcEEEEEcCCCCH--------------------H----HHHHHHHHCCc-EEEccchhhhhHHH
Confidence            99998887777653 57899999976431                    1    33444544553 333211        


Q ss_pred             -ECCEeEEEEEecCCCCCcC
Q 048438          220 -LGGIYAIRFATGATLTEER  238 (239)
Q Consensus       220 -~~g~~~lR~~~~~~~t~~~  238 (239)
                       .+-..++|+|++-++|.+|
T Consensus       370 ~~~~~g~iRiS~~~ynt~eD  389 (405)
T d1jf9a_         370 YYNVPAMCRASLAMYNTHEE  389 (405)
T ss_dssp             HTTCSCEEEEECCTTCCHHH
T ss_pred             hcCCCCEEEEECCCCCCHHH
Confidence             1123579999998888764

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=99.89  E-value=2.9e-22  Score=170.23  Aligned_cols=202  Identities=13%  Similarity=0.121  Sum_probs=139.1

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHh----CCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQF----GIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD   79 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~----gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g   79 (239)
                      .+-+|++++.+|.+|.+.|+++|.++||++    ++++|||++|+.+..+++     +..+ ++|++++++|||+++|.|
T Consensus       145 ~t~~v~i~~~~n~tG~~~~~~~I~~l~~~~~~~~~~~~~vD~~~~~g~~~~~-----~~~~-~~D~~~~s~~K~~~~p~G  218 (381)
T d1elua_         145 KTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLD-----FSRL-EVDYYAFTGHKWFAGPAG  218 (381)
T ss_dssp             TEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCC-----TTTS-CCSEEEEESSSTTCCCTT
T ss_pred             cccccccccccccccccchhhHHHHHHhhccccccccccccccccccccccc-----cccc-ccccccccccccccccch
Confidence            467899999999999999999999999985    699999999999988876     4444 499999999999999999


Q ss_pred             ceEEEeeCcccccccc---cCCCC---ccCCCC-------ceecCCCCC--ChHHHHHHHHHhCHHH-HHHHHHHHHHHH
Q 048438           80 CCCLWATNPEYLKNKA---TESKP---VVDYKD-------WQITLSRSF--RSLKLWFVIRNYGMEN-LRHFLRSHVNMA  143 (239)
Q Consensus        80 ~g~l~~~~~~~l~~~~---~~~~~---~~~~~~-------~~~~~~~~~--~~~~~~~~l~~~g~~g-~~~~~~~~~~la  143 (239)
                      +|++++++. ......   .....   ......       ..+..+.+.  ..+.+..+++.+...+ .+.+.++..+++
T Consensus       219 ~g~l~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~  297 (381)
T d1elua_         219 VGGLYIHGD-CLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRS  297 (381)
T ss_dssp             CEEEEECTT-TGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred             hhHHHhhHH-HHHhcCcccccccccccccccccccccccccccccccccchhhhhhhhhhhhHHHhcccccchhhhhhHH
Confidence            999999653 222111   11000   000000       011112221  1133444555443333 245667888999


Q ss_pred             HHHHHHHhCCCCeEEEcC--CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEEC
Q 048438          144 RLFERLVSGDKRFEVVFP--CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLG  221 (239)
Q Consensus       144 ~~l~~~l~~~~g~~~~~~--~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~  221 (239)
                      +++.+.|+++++++++.+  ++.++|+|.+++...                       .+.+.+.|.++|.. +.  ...
T Consensus       298 ~~l~~~L~~~~~~~~~~~~~~~~~~vsf~~~~~~~-----------------------~~~i~~~L~~~gi~-v~--~~~  351 (381)
T d1elua_         298 EFLWRGLNQLPHVHCLATSAPQAGLVSFTVDSPLG-----------------------HRAIVQKLEEQRIY-LR--TIA  351 (381)
T ss_dssp             HHHHHHHHHSTTEEESCSSCCSSSEEEEEECSSSC-----------------------HHHHHHHHHHTTEE-CE--EET
T ss_pred             HHHHHHHhcCCCeEecCCCCccccEEEEEcCCCCC-----------------------HHHHHHHHHhCCcE-EE--ecC
Confidence            999999999999999864  567899999976421                       11455667777744 32  244


Q ss_pred             CEeEEEEEecCCCCCcC
Q 048438          222 GIYAIRFATGATLTEER  238 (239)
Q Consensus       222 g~~~lR~~~~~~~t~~~  238 (239)
                      +..++|+|++.++|.+|
T Consensus       352 ~~~~lRis~~~~nt~ed  368 (381)
T d1elua_         352 DPDCIRACCHYITDEEE  368 (381)
T ss_dssp             TTTEEEEECCTTCCHHH
T ss_pred             CCCEEEEecCCCCCHHH
Confidence            56789999988777654

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=99.89  E-value=5.8e-23  Score=176.58  Aligned_cols=202  Identities=13%  Similarity=0.128  Sum_probs=139.6

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL   83 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l   83 (239)
                      .+.+|++++.++.+|.+.|+++|+++||++|+++||||+|++|.++++     +..+ ++|++++++||| ++|.|+|++
T Consensus       163 ~t~lv~i~~~~~~tG~~~p~~~i~~~~~~~g~~~ivDa~q~~g~~~id-----~~~~-~~D~~~~s~hK~-~gp~G~g~l  235 (408)
T d1t3ia_         163 KTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLD-----VQLI-DCDWLVASGHKM-CAPTGIGFL  235 (408)
T ss_dssp             TEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCC-----HHHH-TCSEEEEEGGGT-TSCTTCEEE
T ss_pred             CceEEEEecccccccccCcHHHHhhhhhccCceeeeccceeccccccc-----cccc-CCceEEeccccc-cCCCCcccc
Confidence            467899999999999999999999999999999999999999999987     4433 399999999999 579999999


Q ss_pred             EeeCcccccccccC--CCCc----------cCCCCceecCCCC-C-ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Q 048438           84 WATNPEYLKNKATE--SKPV----------VDYKDWQITLSRS-F-RSLKLWFVIRNYGMENLRHFLRSHVNMARLFERL  149 (239)
Q Consensus        84 ~~~~~~~l~~~~~~--~~~~----------~~~~~~~~~~~~~-~-~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~  149 (239)
                      |+++. .+....+.  .+..          .......++.|++ + ..+++..+++.+...|++++.++..+|++++.+.
T Consensus       236 ~v~~~-~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~  314 (408)
T d1t3ia_         236 YGKEE-ILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQG  314 (408)
T ss_dssp             EECHH-HHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             ccchh-hhhcCCceecCCcccccccccccccCCchhhhcCCcHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhHHhhh
Confidence            99653 22111110  0000          0001122333443 1 1234445565554456667777778999999999


Q ss_pred             HhCCCCeEEEcCC-----CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEE------
Q 048438          150 VSGDKRFEVVFPC-----HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNV------  218 (239)
Q Consensus       150 l~~~~g~~~~~~~-----~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~------  218 (239)
                      +.+.+++.++.+.     ..++++|.+++...                    .    .+...|.+.|. .++..      
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~~iv~f~~~~~~~--------------------~----~v~~~L~~~gI-~v~~G~~c~~~  369 (408)
T d1t3ia_         315 LGQIPQLRLYGPNPKHGDRAALASFNVAGLHA--------------------S----DVATMVDQDGI-AIRSGHHCTQP  369 (408)
T ss_dssp             HHTCTTEEEESCCGGGSCBCSEEEEEETTBCH--------------------H----HHHHHHHTTTE-ECBCSCTTCHH
T ss_pred             hccCccccccCCCccccCcceEEEEEeCCCCH--------------------H----HHHHHHhhCCc-EEecCcccccH
Confidence            9999999988742     36799999986421                    1    34455555553 33211      


Q ss_pred             ---EECCEeEEEEEecCCCCCcC
Q 048438          219 ---VLGGIYAIRFATGATLTEER  238 (239)
Q Consensus       219 ---~~~g~~~lR~~~~~~~t~~~  238 (239)
                         ..+...++|+|++-++|.+|
T Consensus       370 ~~~~~~~~g~vRiS~~~ynt~~d  392 (408)
T d1t3ia_         370 LHRLFDASGSARASLYFYNTKEE  392 (408)
T ss_dssp             HHHHTTCCCCEEEECCTTCCHHH
T ss_pred             HHHhhcCCccEEEECCCCCCHHH
Confidence               01224579999998888764

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.84  E-value=1.8e-21  Score=168.23  Aligned_cols=158  Identities=12%  Similarity=0.132  Sum_probs=120.5

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLW   84 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~   84 (239)
                      +++|+++.+++..|.++|+++|+++||+||+|+|||+||+++....+........ .++|++++++||++++|.|+|+++
T Consensus       212 ~~~v~~~~~~~~~g~~~~l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~~~~~~~~-~~~D~~~~s~hK~l~~~~g~~~~~  290 (434)
T d2z67a1         212 RPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFK-YRVDAVVSSSDKNLLTPIGGGLVY  290 (434)
T ss_dssp             CEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHT-SCCSEEEEEHHHHHCCCSSCEEEE
T ss_pred             ceEEEeccCcCCCccccCHHHHHHHHHHhCCeEEEeccchhhhhhcccccccccc-CCcceEEEcCccccccCCCccccc
Confidence            4578899999999999999999999999999999999998765433322111112 259999999999999999999999


Q ss_pred             eeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC---CCeEEEcC
Q 048438           85 ATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD---KRFEVVFP  161 (239)
Q Consensus        85 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~---~g~~~~~~  161 (239)
                      +++..++......          ....+....+..+|.++..++.+++++..++..++++++++.|+++   .++.++..
T Consensus       291 ~~~~~~~~~~~~~----------~~~~~~~~~~~~~~a~l~~~~~~g~~~~~~~~~~~a~~l~~~L~~l~~~~g~~ll~~  360 (434)
T d2z67a1         291 STDAEFIKEISLS----------YPGRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDV  360 (434)
T ss_dssp             ESCHHHHHHHHTT----------SCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCCC
T ss_pred             cCcHHHHHHHHhh----------cccccccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhhhhcCceecCC
Confidence            9877666544321          0111223456788889999999999999999999999999998764   36677766


Q ss_pred             CCeeEEEEEEcC
Q 048438          162 CHFAVVCFRVSP  173 (239)
Q Consensus       162 ~~~~iv~f~~~~  173 (239)
                      +..+.+++.+..
T Consensus       361 ~~~~~~~~~~~~  372 (434)
T d2z67a1         361 ESPIASCISVNS  372 (434)
T ss_dssp             CCSSEEEEECSS
T ss_pred             CCCceeeeecCC
Confidence            666666666543

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.84  E-value=1.5e-20  Score=158.23  Aligned_cols=204  Identities=13%  Similarity=0.084  Sum_probs=132.5

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL   83 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l   83 (239)
                      .+.+|.+++.+|.+|.+.|+++|+++||++|++++|||+|+.|..+++     ++.+ ++|++++++|||+++|.|.|++
T Consensus       127 ~~~~v~~~~~~~~tG~~~~i~~i~~~~~~~g~~~~vDa~qs~G~~~~d-----~~~~-~~D~~~~s~~K~l~gp~G~g~l  200 (361)
T d1m32a_         127 TISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMD-----IAAL-HIDYLISSANKCIQGVPGFAFV  200 (361)
T ss_dssp             TCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCC-----TTTT-TCSEEEEESSSTTCCCSSEEEE
T ss_pred             CccceEEEeeecccccchhhhhhhhhhcccceeeEeecccccCccccc-----cccc-ccceEEeeecccccCCCCceEE
Confidence            467899999999999999999999999999999999999999999887     5555 4999999999999999999999


Q ss_pred             EeeCcccccccccCCCCc-cCC--C------CceecCCCC--CChHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHh
Q 048438           84 WATNPEYLKNKATESKPV-VDY--K------DWQITLSRS--FRSLKLWFVIRNYGME-NLRHFLRSHVNMARLFERLVS  151 (239)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~-~~~--~------~~~~~~~~~--~~~~~~~~~l~~~g~~-g~~~~~~~~~~la~~l~~~l~  151 (239)
                      ++++. .+.......... ...  .      ......++.  ...+.+..++..+..+ +.....++...+++.+.+.+.
T Consensus       201 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~  279 (361)
T d1m32a_         201 IAREQ-KLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMR  279 (361)
T ss_dssp             EEEHH-HHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Eechh-hhhhhccccccccccchhhhccccccccccCCCCCchhhhHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHh
Confidence            99742 222221110000 000  0      000000111  1123333344433333 345566677788889999888


Q ss_pred             CCCCeEEEcCC--C-eeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEE
Q 048438          152 GDKRFEVVFPC--H-FAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRF  228 (239)
Q Consensus       152 ~~~g~~~~~~~--~-~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~  228 (239)
                      .. |+.+..++  + ..+++|..+....                     .....+.+.|.++|....+.. .....++|+
T Consensus       280 ~~-g~~~~~~~~~rs~~v~~~~~p~~~~---------------------~~~~~~~~~l~~~gi~i~~G~-~~~~~~~Ri  336 (361)
T d1m32a_         280 AL-GFNTLLDDELHSPIITAFYSPEDPQ---------------------YRFSEFYRRLKEQGFVIYPGK-VSQSDCFRI  336 (361)
T ss_dssp             HT-TCCBSSCGGGBCSSEEEEECCCCTT---------------------CCHHHHHHHHHHTTEECEECC-CSSSCEEEE
T ss_pred             hc-CCcccCChhhcCCcEEEEECCCCCC---------------------CCHHHHHHHHHHCCcEEECCC-cCCCCEEEE
Confidence            75 66665543  2 3467787754210                     112256677877886644322 223457899


Q ss_pred             EecCCCCCc
Q 048438          229 ATGATLTEE  237 (239)
Q Consensus       229 ~~~~~~t~~  237 (239)
                      +.++++|.+
T Consensus       337 s~~g~~~~~  345 (361)
T d1m32a_         337 GNIGEVYAA  345 (361)
T ss_dssp             ECCSSCCHH
T ss_pred             eCCCCCCHH
Confidence            977776644

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=99.83  E-value=6.8e-20  Score=156.41  Aligned_cols=198  Identities=12%  Similarity=0.046  Sum_probs=130.7

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc-ceE
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD-CCC   82 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g-~g~   82 (239)
                      .+.+|++++.++.+|.+.|+++|+++||++|+++|||++|+.|..+++     +..+ ++|++++++|||+++|.| +|+
T Consensus       164 ~T~lV~i~~v~~~tG~~~pv~~i~~~~~~~~~~~~vD~~q~~g~~~~~-----~~~~-~~d~~~~s~~K~~~~~~g~~g~  237 (404)
T d1qz9a_         164 DTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVD-----LHQA-GADYAIGCTYKYLNGGPGSQAF  237 (404)
T ss_dssp             TEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCC-----HHHH-TCSEEEECSSSTTCCCTTCCCE
T ss_pred             CceEEEEecccccccceecHHHHhccccccccceeEEeeccccccccc-----cccc-cceEEEEechhhcccCCceEEE
Confidence            467899999999999999999999999999999999999999999886     4443 499999999999987666 566


Q ss_pred             EEeeCcccccccccCCC-------CccCCCCceecC-CCCC-----Ch---HHHHH---HHHHhCHHHHHHHHHHHHHHH
Q 048438           83 LWATNPEYLKNKATESK-------PVVDYKDWQITL-SRSF-----RS---LKLWF---VIRNYGMENLRHFLRSHVNMA  143 (239)
Q Consensus        83 l~~~~~~~l~~~~~~~~-------~~~~~~~~~~~~-~~~~-----~~---~~~~~---~l~~~g~~g~~~~~~~~~~la  143 (239)
                      ++.+. ..+........       .......+.... .+++     ..   ..+..   .+..++.+.++++......+.
T Consensus       238 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  316 (404)
T d1qz9a_         238 VWVSP-QLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLF  316 (404)
T ss_dssp             EEECT-TTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred             EEech-hhhhhCCccccccCCccccccccccccccccchhhhhhhccchhHHHHHHHHHHHHHhhHHHHHHHHHHhHHHH
Confidence            66543 33222211000       000001111110 1111     11   12222   233456777777777777777


Q ss_pred             HHHHHHHhCCCCeEEEcCC----CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEE
Q 048438          144 RLFERLVSGDKRFEVVFPC----HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVV  219 (239)
Q Consensus       144 ~~l~~~l~~~~g~~~~~~~----~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~  219 (239)
                      ..+.+.+...+++++++|.    ..++|+|.+++.                      .    .+.+.|.++|.+ +.   
T Consensus       317 ~~l~~~~~~~~~~~i~~p~~~~~r~~~vsf~~~~~----------------------~----~v~~~L~~~gi~-~~---  366 (404)
T d1qz9a_         317 IELVEQRCAAHELTLVTPREHAKRGSHVSFEHPEG----------------------Y----AVIQALIDRGVI-GD---  366 (404)
T ss_dssp             HHHHHHHHTTSCCEECSCSSGGGBCSEEEEECTTH----------------------H----HHHHHHHTTTEE-CE---
T ss_pred             HHHHHhhccCCCEEEECCCCccceeeEEEEecCCH----------------------H----HHHHHHHHCCCE-Ee---
Confidence            7777777788899999764    367999998641                      1    566677766643 22   


Q ss_pred             ECCEeEEEEEec-CCCCCcC
Q 048438          220 LGGIYAIRFATG-ATLTEER  238 (239)
Q Consensus       220 ~~g~~~lR~~~~-~~~t~~~  238 (239)
                      .+...+||+|+. -+||.+|
T Consensus       367 ~r~~~~lRiS~~h~ynt~~d  386 (404)
T d1qz9a_         367 YREPRIMRFGFTPLYTTFTE  386 (404)
T ss_dssp             EETTTEEEEECCTTTCCHHH
T ss_pred             ecCCCeEEEECCCCCCCHHH
Confidence            223458999985 5777654

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.1e-20  Score=160.56  Aligned_cols=203  Identities=12%  Similarity=0.058  Sum_probs=130.4

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL   83 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l   83 (239)
                      .+.+|++++.+|.+|.++|+++|+++||++|+++||||+|+.+..+++     ++.+ ++|++++++|||+++|.|+|++
T Consensus       144 ~~~~v~~~~~~n~tG~i~pi~~i~~~~~~~g~~~~vD~~qs~g~~~~d-----~~~~-~~D~~~~s~~K~~~gp~g~~~~  217 (388)
T d1h0ca_         144 KPVLLFLTHGESSTGVLQPLDGFGELCHRYKCLLLVDSVASLGGTPLY-----MDRQ-GIDILYSGSQKALNAPPGTSLI  217 (388)
T ss_dssp             CCSEEEEESEETTTTEECCCTTHHHHHHTTTCEEEEECTTTTTTSCCC-----TTTT-TCSEEEEESSSTTCCCTTCEEE
T ss_pred             CcceEEEeeeeeccccccCHHHHHHHhhcccccceecccccccccccc-----cccc-ccceecccccccccCCCceEEE
Confidence            356888999999999999999999999999999999999999999887     5554 4999999999999999999999


Q ss_pred             EeeCcccccccccC----CCCccCC----------CCceecCCCCC--ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Q 048438           84 WATNPEYLKNKATE----SKPVVDY----------KDWQITLSRSF--RSLKLWFVIRNYGMENLRHFLRSHVNMARLFE  147 (239)
Q Consensus        84 ~~~~~~~l~~~~~~----~~~~~~~----------~~~~~~~~~~~--~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~  147 (239)
                      +++.. .+......    ...+.+.          .......+...  ....+..+++.+...|++++.++..+++++++
T Consensus       218 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~~~~g~~~~~~~~~~l~~~l~  296 (388)
T d1h0ca_         218 SFSDK-AKKKMYSRKTKPFSFYLDIKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLH  296 (388)
T ss_dssp             EECHH-HHHHHTTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             eecHH-HHHhhhhccccccccccccchhhhhhhhccccccccccccHHHHHHHHHHHHHHHHhccccccccccchhHHHH
Confidence            98542 22111100    0001110          00001111111  11233344555555567777788889999999


Q ss_pred             HHHhCCCCeEEEcC-C---CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEE-EEECC
Q 048438          148 RLVSGDKRFEVVFP-C---HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTN-VVLGG  222 (239)
Q Consensus       148 ~~l~~~~g~~~~~~-~---~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~-~~~~g  222 (239)
                      +.+.+. ++.++.+ +   ..++++|.++..-                +       ...+.+.|.+++.+.+.. .....
T Consensus       297 ~~~~~~-g~~~~~~~~~~rs~~i~~~~~p~~~----------------~-------~~~~~~~L~~~~gI~v~~G~~~~~  352 (388)
T d1h0ca_         297 GRLQAL-GLQLFVKDPALRLPTVTTVAVPAGY----------------D-------WRDIVSYVIDHFDIEIMGGLGPST  352 (388)
T ss_dssp             HHHHHH-TCCBSSCSGGGBCTTEEEEECCTTC----------------C-------HHHHHHHHHHHHCEECEECCGGGT
T ss_pred             HHHhhc-CcccccCCHHHcCCeEEEEECCCCC----------------C-------HHHHHHHHHhcCCEEEeCCchhhc
Confidence            999886 6555432 2   2468899986421                0       124555665554443432 11112


Q ss_pred             EeEEEEEecCCCCCc
Q 048438          223 IYAIRFATGATLTEE  237 (239)
Q Consensus       223 ~~~lR~~~~~~~t~~  237 (239)
                      ...+|++.+.++++.
T Consensus       353 ~~~iRis~~g~~~t~  367 (388)
T d1h0ca_         353 GKVLRIGLLGCNATR  367 (388)
T ss_dssp             TTEEEEECCGGGCSH
T ss_pred             CCEEEEeCCCCCCCH
Confidence            347899955554443

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=2.9e-20  Score=157.75  Aligned_cols=203  Identities=14%  Similarity=0.093  Sum_probs=137.5

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhC--CEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccce
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFG--IWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCC   81 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~g--i~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g   81 (239)
                      .+-++++++.+|.+|...|+++++++|++++  +++|||++|++|.++++     ++.+ ++|++++++|||+++|+|+|
T Consensus       135 ~~~~v~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~vDa~qs~g~~pid-----~~~~-giD~~~~s~~K~l~gP~G~g  208 (382)
T d2bkwa1         135 SYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFE-----FDEW-GVDFALTASQKAIGAPAGLS  208 (382)
T ss_dssp             CCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCC-----TTTT-TCSEEEEESSSTTCCCSCEE
T ss_pred             cchheeeeeccccccccccchhhhhhccccccceeeeeeccccccccccc-----cccc-CeeEEeecccccCcCCCchh
Confidence            3568899999999999999999999998875  99999999999999998     5554 49999999999999999999


Q ss_pred             EEEeeCcccccccc---c--CCC-CccCCCCc-----------eecCCCCC--ChHHHHHHHHHhCHHHHHHHHHHHHHH
Q 048438           82 CLWATNPEYLKNKA---T--ESK-PVVDYKDW-----------QITLSRSF--RSLKLWFVIRNYGMENLRHFLRSHVNM  142 (239)
Q Consensus        82 ~l~~~~~~~l~~~~---~--~~~-~~~~~~~~-----------~~~~~~~~--~~~~~~~~l~~~g~~g~~~~~~~~~~l  142 (239)
                      ++++++. .+....   .  ... .+.+...+           ....+++.  ...++..+++.+..+|++++.+++.++
T Consensus       209 ~l~vs~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~~~~~~g~~~~~~~~~~l  287 (382)
T d2bkwa1         209 ISLCSSR-FMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREM  287 (382)
T ss_dssp             EEEECHH-HHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             hhhccHH-HHhhhhhcccCCCcccchhhhhhhhhhhhcccccccccccCCcHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence            9999642 221111   0  000 00000000           00011111  124455677777777888888889999


Q ss_pred             HHHHHHHHhCCCCeEEEcC--C---CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEE
Q 048438          143 ARLFERLVSGDKRFEVVFP--C---HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTN  217 (239)
Q Consensus       143 a~~l~~~l~~~~g~~~~~~--~---~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~  217 (239)
                      ++++++.+.+..++..+..  +   ...+++|.++..                      .    .+.+.|.++|..+.+.
T Consensus       288 ~~~l~~~l~~~~~~~~~~~~~~~~~s~~v~~~~~~~~----------------------~----~~~~~L~~~gi~i~~G  341 (382)
T d2bkwa1         288 SDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVYVADP----------------------P----DVIAFLKSHGVVIAGG  341 (382)
T ss_dssp             HHHHHHHHHTTTCCEESSCSSSTTBCSSCEEEECSCH----------------------H----HHHHHHHHTTEECBCC
T ss_pred             HHHHHHHhhhcccccccccCchhccCCcEEEEcCCCH----------------------H----HHHHHHHHCCeEEECC
Confidence            9999999988777766642  1   235677887541                      1    3444565666554332


Q ss_pred             EE-ECCEeEEEEEecCCCCCcCC
Q 048438          218 VV-LGGIYAIRFATGATLTEERH  239 (239)
Q Consensus       218 ~~-~~g~~~lR~~~~~~~t~~~~  239 (239)
                      .. ..+..++|++.+.+++++||
T Consensus       342 ~~~~~~~~~~Ri~~~G~~~~~e~  364 (382)
T d2bkwa1         342 IHKDIGPKYIRIGHMGVTACNKN  364 (382)
T ss_dssp             CCTTTGGGEEEECCCGGGTSSTT
T ss_pred             CChhhcCCEEEEeCCcCCCCHHH
Confidence            11 12346799997777776654

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=1.8e-20  Score=162.27  Aligned_cols=158  Identities=15%  Similarity=0.139  Sum_probs=118.0

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL   83 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l   83 (239)
                      .+++|++++++|.+|.++|+++|+++|++||+|+|||+||+++............++..+|++++++||++++|.|+|++
T Consensus       194 ~~~~v~~~~~~~~~G~~~~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~vd~~~~s~hK~~~~p~g~~~l  273 (445)
T d3bc8a1         194 HILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAII  273 (445)
T ss_dssp             GEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHHHSCCCEEEEEHHHHHSCCSSCEEE
T ss_pred             CeEEEEEeCCCCCCeeehhHHHHHHHHHHhCCcEEEEccchhhhhhccccchhccCcCCcceEEecCccccccCCCCcee
Confidence            46899999999999999999999999999999999999999876654332222223345999999999999999999999


Q ss_pred             EeeCcccccccccCCCCccCCCCceecC-CCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC---CeEEE
Q 048438           84 WATNPEYLKNKATESKPVVDYKDWQITL-SRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK---RFEVV  159 (239)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~---g~~~~  159 (239)
                      ++++..++.....           .... +.....+..|..+..++.+++.+..++..++++++.+.|.++.   +..++
T Consensus       274 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~l  342 (445)
T d3bc8a1         274 AGFNEPFIQDISK-----------MYPGRASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLL  342 (445)
T ss_dssp             EESCHHHHHHHHH-----------HSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBC
T ss_pred             eeCChHHHHHHHH-----------HHhhcccCcchHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHhhcCceee
Confidence            9987655443321           1111 1223458889999999999999999999999999999887642   45555


Q ss_pred             cCCC-eeEEEEEEc
Q 048438          160 FPCH-FAVVCFRVS  172 (239)
Q Consensus       160 ~~~~-~~iv~f~~~  172 (239)
                      ..+. ....++.+.
T Consensus       343 ~~~~~~~~~~~~l~  356 (445)
T d3bc8a1         343 QTPHNPISLAMTLK  356 (445)
T ss_dssp             CCTTCSSEEEEECT
T ss_pred             cCCCCCcceEEEee
Confidence            4433 233344443

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

Probab=99.76  E-value=6.7e-19  Score=148.66  Aligned_cols=204  Identities=9%  Similarity=0.010  Sum_probs=130.9

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL   83 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l   83 (239)
                      .+.+|+.++.+|.+|.++|+++|+++||++|+.++||++|+.|.++++     ++.+. +|+++++.|||+++|.|+|++
T Consensus       143 ~~~~v~~~~~~~~tg~~~~i~~i~~~~~~~g~~~~vDa~~~~g~~~~~-----~~~~~-~d~~~~s~~K~~~gp~g~~~~  216 (377)
T d1vjoa_         143 RPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIF-----LDAWG-VDLAYSCSQKGLGCSPGASPF  216 (377)
T ss_dssp             CCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTTSCCC-----TTTTT-CSEEECCSSSTTCSCSSCEEE
T ss_pred             cceeeeeeeeeccceeeechhhhhhhhhhccceEEEecchhhhhhhhc-----ccccc-cceeeecccccccCCCEEEEe
Confidence            356788899999999999999999999999999999999999988887     55554 999999999999999999999


Q ss_pred             EeeCcccccccccCCC--CccCCC---------CceecCCCCC-Ch-HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Q 048438           84 WATNPEYLKNKATESK--PVVDYK---------DWQITLSRSF-RS-LKLWFVIRNYGMENLRHFLRSHVNMARLFERLV  150 (239)
Q Consensus        84 ~~~~~~~l~~~~~~~~--~~~~~~---------~~~~~~~~~~-~~-~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l  150 (239)
                      +++. ..+........  ......         ......+... .. ..+..+...+...+.+.+.++..++++++.+.+
T Consensus       217 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~l~~~l  295 (377)
T d1vjoa_         217 TMSS-RAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERL  295 (377)
T ss_dssp             EECH-HHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred             cchh-hHHhhhhccCCCCcceeeccchhhhccCcccccccccceechhhhHHHHhhhhhcCchHHHHHHHHHhhhhhhhh
Confidence            8854 22221111100  000000         0000111111 01 122223334455677788888889999999999


Q ss_pred             hCCCCeEEEcCC---CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEE-EEEECCEeEE
Q 048438          151 SGDKRFEVVFPC---HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMT-NVVLGGIYAI  226 (239)
Q Consensus       151 ~~~~g~~~~~~~---~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~-~~~~~g~~~l  226 (239)
                      .+. ++.++.++   ...+++|.+++.-                +       ...+.+.|.++..+.+. .....+..++
T Consensus       296 ~~~-~~~~~~~~~~rs~~v~~~~~p~~~----------------~-------~~~l~~~L~~~~gI~v~~G~~~~~~~~~  351 (377)
T d1vjoa_         296 EDI-GLSLHVEKEYRLPTLTTVCIPDGV----------------D-------GKAVARRLLNEHNIEVGGGLGELAGKVW  351 (377)
T ss_dssp             HHT-TCCBSSCGGGBCSSEEEEECCTTC----------------C-------HHHHHHHHHHHHCEECEECCGGGTTTEE
T ss_pred             hcc-CceeecChHhcCCeEEEEECCCCC----------------C-------HHHHHHHHHhcCCEEEecCcccccCCEE
Confidence            885 76665443   2457788886421                0       12455566555334332 2211133578


Q ss_pred             EEEecCCCCCcC
Q 048438          227 RFATGATLTEER  238 (239)
Q Consensus       227 R~~~~~~~t~~~  238 (239)
                      |++.+.+++++|
T Consensus       352 Ris~~g~~~t~e  363 (377)
T d1vjoa_         352 RVGLMGFNSRKE  363 (377)
T ss_dssp             EEECCGGGCSHH
T ss_pred             EEecCcCCCCHH
Confidence            999766666554

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=2.4e-17  Score=140.08  Aligned_cols=160  Identities=9%  Similarity=0.038  Sum_probs=108.3

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL   83 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l   83 (239)
                      .+-+|++++.++.+|.+.|+++|+++||++|++++||++|+.+..+++     +..+ .+|++++++||| ++|.|+|++
T Consensus       143 ~T~lv~is~~~n~tG~~~~~~~I~~~~~~~~~~~ivD~~~~~g~~~~d-----~~~~-~~D~~~~s~~k~-~g~~g~g~~  215 (391)
T d1p3wa_         143 DTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPID-----LSQL-KVDLMSFSGHKI-YGPKGIGAL  215 (391)
T ss_dssp             TEEEEECCSBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTBTTBCCC-----TTTS-CCSEEEEESTTT-TSCSSCEEE
T ss_pred             CcEEEEEECCCCCCeeECCHHHHHHHhccCCcEEEEeeccccCCcccc-----chhc-cccccccccccc-cCCCceEEE
Confidence            456888999999999999999999999999999999999999998887     4444 499999999999 578899999


Q ss_pred             EeeCcccccccccCCCCccCCCCceecCCCCC--ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcC
Q 048438           84 WATNPEYLKNKATESKPVVDYKDWQITLSRSF--RSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFP  161 (239)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~  161 (239)
                      +++.. ++........+...  ......+...  ...++...+.. ..+...+..++..++..++.+.|.++++..+...
T Consensus       216 ~~~~~-~~~~~~~~~~gg~~--~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~  291 (391)
T d1p3wa_         216 YVRRK-PRVRIEAQMHGGGH--ERGMRSGTLPVHQIVGMGEAYRI-AKEEMATEMERLRGLRNRLWNGIKDIEEVYLNGD  291 (391)
T ss_dssp             EECBT-TBCCCCCSSCSSCT--TTTTSCSCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTTTSTTEEECSC
T ss_pred             EEecc-hhcccCCcccCCcc--ccCcccCcchhhhhhhhhhhhhH-HHHHhhHHHHHHHHHHHHHHHHHHhhcCeeeccc
Confidence            99653 33332211100000  0111111111  11222222222 2234455567777899999999999877766543


Q ss_pred             C---CeeEEEEEEcCC
Q 048438          162 C---HFAVVCFRVSPL  174 (239)
Q Consensus       162 ~---~~~iv~f~~~~~  174 (239)
                      .   ...+++|..+..
T Consensus       292 ~~~~~~~~~~~~~~~~  307 (391)
T d1p3wa_         292 LEHGAPNILNVSFNYV  307 (391)
T ss_dssp             TTTSCTTEEEEEETTS
T ss_pred             ccccCceEEEEEeCCC
Confidence            2   346778887764

>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Subgroup IV putative aspartate aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.72  E-value=1.2e-17  Score=140.11  Aligned_cols=200  Identities=13%  Similarity=-0.013  Sum_probs=128.6

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhC--CEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFG--IWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCC   82 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~g--i~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~   82 (239)
                      +-.|++++.+|.+|.+.|+++|+++||+++  .+++||+.++.+..+++     ++.+ ++|++++++|||+++|+|.|+
T Consensus       121 ~~~v~~~h~eTstG~~~~i~~i~~~~~~~~~~~l~~vDavss~g~~~i~-----~d~~-~iD~~~~~sqK~l~gppG~~~  194 (348)
T d1iuga_         121 YAGLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVGEVA-----LEAM-GVDAAASGSQKGLMCPPGLGF  194 (348)
T ss_dssp             CSEEEEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTTBCCC-----SGGG-TCSEEEEESSSTTCCCSCEEE
T ss_pred             CCeeEEEecchhhhhhccHHHHHHHHHhhhccceeechhhhcccccccc-----cccc-cCCEEEeccccceecCCceee
Confidence            457889999999999999999999999985  79999999999888776     4444 399999999999999999999


Q ss_pred             EEeeCcccccccccCCCCccCCCC---ceecCCCCC-----ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 048438           83 LWATNPEYLKNKATESKPVVDYKD---WQITLSRSF-----RSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK  154 (239)
Q Consensus        83 l~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~-----~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~  154 (239)
                      +++++ ..+..... .+.++|+..   ....+.+++     ..+++-.+++.+-.++ +++.++.......+++.++. .
T Consensus       195 v~~s~-~~le~~~~-~~~~~dl~~~~~~~~~~~~~~Tp~v~~i~~l~~aL~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~  270 (348)
T d1iuga_         195 VALSP-RALERLKP-RGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPRL-EEHLALKAWQNALLYGVGEE-G  270 (348)
T ss_dssp             EEECH-HHHHTCCC-CSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGGH-HHHHHHHHHHHHHHHHHHHH-T
T ss_pred             eeech-HHHhhhcc-cccccchhhhhhhhccCcccccccchHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHhhhhhh-h
Confidence            99964 34433221 112232211   001112222     1134445566543333 44445444455556655555 4


Q ss_pred             CeEEEcCCCe-eEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCC
Q 048438          155 RFEVVFPCHF-AVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGAT  233 (239)
Q Consensus       155 g~~~~~~~~~-~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~  233 (239)
                      |+++.....+ .+++|++|.. .               +       ...+.+.|.++|.++......-....+|++.+..
T Consensus       271 gl~~~~~~~s~~v~~~~~P~g-~---------------~-------~~~~~~~l~~~gi~i~~G~~~l~~~~~RIg~mG~  327 (348)
T d1iuga_         271 GLRPVPKRFSPAVAAFYLPEG-V---------------P-------YARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMGA  327 (348)
T ss_dssp             TCEESCSSBCTTCEEEECCTT-C---------------C-------HHHHHHHHHTTTEECEECCGGGTTTEEEECCCSS
T ss_pred             hhccChhhcCCeEEEEECCCC-C---------------C-------HHHHHHHHHHCCeEEEcCccccCCCEEEEeCCCC
Confidence            8887654444 3788998642 1               0       1256677877886654432211225789998877


Q ss_pred             CCCc
Q 048438          234 LTEE  237 (239)
Q Consensus       234 ~t~~  237 (239)
                      .+.+
T Consensus       328 ~~~~  331 (348)
T d1iuga_         328 YDRY  331 (348)
T ss_dssp             CCHH
T ss_pred             CCHH
Confidence            6654

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

Probab=99.69  E-value=1.1e-17  Score=141.73  Aligned_cols=161  Identities=15%  Similarity=0.084  Sum_probs=106.8

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLW   84 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~   84 (239)
                      +.++++++.+|.+|.+.|+++|+++||++|+.++||++++.+..+++     ++.+. +|+++++.|||+++|.|+|+++
T Consensus       143 ~~~v~~~~~~t~tG~~~~~~~i~~~~~~~~~~~~vD~~ss~g~~pid-----~~~~~-~d~~~~s~~K~~~gp~G~g~~~  216 (388)
T d2ch1a1         143 PKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFY-----MDKWE-IDAVYTGAQKVLGAPPGITPIS  216 (388)
T ss_dssp             CSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCC-----TTTTT-CCEEECCCC-CCCCCSSCEEEE
T ss_pred             cceeeeeecccccccccchhhhcchhccccceeeeeeeecccccccc-----hhccC-ceEEEEccccccCCCCeEEEEe
Confidence            56788999999999999999999999999999999999999999887     56654 9999999999999999999999


Q ss_pred             eeCcccccccccC----CCCccCC------CCceecC-CCCC-----ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Q 048438           85 ATNPEYLKNKATE----SKPVVDY------KDWQITL-SRSF-----RSLKLWFVIRNYGMENLRHFLRSHVNMARLFER  148 (239)
Q Consensus        85 ~~~~~~l~~~~~~----~~~~~~~------~~~~~~~-~~~~-----~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~  148 (239)
                      ++.. .+......    .....+.      ....... .+..     ....+..+++.+...+..++.++...+..+...
T Consensus       217 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  295 (388)
T d2ch1a1         217 ISPK-ALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYE  295 (388)
T ss_dssp             ECHH-HHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             ccHH-HHHhhhcccCccccccccchhhhhhhcccccccccCccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence            8642 22211110    0000000      0000011 1111     113334455555566666777777777777777


Q ss_pred             HHhCCCCeEEEc-CC--C-eeEEEEEEcC
Q 048438          149 LVSGDKRFEVVF-PC--H-FAVVCFRVSP  173 (239)
Q Consensus       149 ~l~~~~g~~~~~-~~--~-~~iv~f~~~~  173 (239)
                      .+... ++.+.. ++  + .++++|.++.
T Consensus       296 ~~~~~-~~~~~~~~~~~rs~~v~~~~~p~  323 (388)
T d2ch1a1         296 GLGKM-GLDIFVKDPRHRLPTVTGIMIPK  323 (388)
T ss_dssp             HHHHH-TCCBSSCSGGGBCTTEEEEECCT
T ss_pred             hhhhc-ccccccCCHHHhCCeEEEEECCC
Confidence            77654 333332 22  2 3578999964

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.68  E-value=1.2e-15  Score=128.64  Aligned_cols=158  Identities=10%  Similarity=0.108  Sum_probs=105.1

Q ss_pred             CccEEEEEecCCCCcccccChhHHHHHHHHh--CCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438            3 LIPLFLCATIGTTAITAVDPLKPLCDVAKQF--GIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC   80 (239)
Q Consensus         3 ~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~--gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~   80 (239)
                      ..+.+|++++.++.+|.+.|++++.++++.+  ++.++|||+|+.+.++++     +..+ ++|++++++||| ++|.|+
T Consensus       138 ~~t~lv~is~v~~~tG~~~~~~~i~~~~~~~~~~~~~~vD~~q~~g~~~~d-----~~~~-~~D~~~~s~~K~-~gp~G~  210 (376)
T d1eg5a_         138 EDTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIPFS-----LEKL-EVDYASFSAHKF-HGPKGV  210 (376)
T ss_dssp             TTEEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTSCCC-----CTTT-CCSEEEEEGGGG-TSCTTC
T ss_pred             CCceEEEEECCccccceeeeehhhhhhhhhcccCceeEEEeeecccccccc-----cccc-Cccceeccccee-ecCCCc
Confidence            3578999999999999999999999999766  899999999999999887     4444 499999999999 579999


Q ss_pred             eEEEeeCcccccccccCCCCccCCCCceecCCCC-CCh-HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 048438           81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRS-FRS-LKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEV  158 (239)
Q Consensus        81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~  158 (239)
                      |++|+++...+.+.....+ ..    .....+.. ... ......... ..........+...+.+++.+.|..... .+
T Consensus       211 ~~l~~~~~~~~~p~~~g~~-~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~  283 (376)
T d1eg5a_         211 GITYIRKGVPIRPLIHGGG-QE----RGLRSGTQNVPGIVGAARAMEI-AVEELSEAAKHMEKLRSKLVSGLMNLGA-HI  283 (376)
T ss_dssp             EEEEECTTSCCCCSBCSSC-TT----TTTBCSCCCHHHHHHHHHHHHH-HHHTHHHHHHHHHHHHHHHHHHHHTTTC-EE
T ss_pred             eeEEeccCcccCCcccCCC-Cc----ccccCCcccchhhhhHHHHhhc-cccchhhhhhhhhhhhhhhccccccccc-cc
Confidence            9999976433332221110 00    01111111 111 111112221 2223445556666778889999987633 33


Q ss_pred             EcC---CCeeEEEEEEcCC
Q 048438          159 VFP---CHFAVVCFRVSPL  174 (239)
Q Consensus       159 ~~~---~~~~iv~f~~~~~  174 (239)
                      ..+   ...+++.|.+++.
T Consensus       284 ~~~~~~~~~~~~~~~~~~~  302 (376)
T d1eg5a_         284 ITPLEISLPNTLSVSFPNI  302 (376)
T ss_dssp             CSCTTSBCTTEEEEECTTC
T ss_pred             cccccccccceeeeccCCC
Confidence            432   2456788888764

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.65  E-value=3e-16  Score=131.39  Aligned_cols=157  Identities=15%  Similarity=0.102  Sum_probs=98.7

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL   83 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l   83 (239)
                      .+.+|+.++.+|.+|.+.|+++|+++|++||+++|||+||+.+.++.+     ...+ ++|++++|+||++++|.++|++
T Consensus       140 ~~~lv~i~~~~n~tG~~~~l~~I~~ia~~~~i~livD~a~~~g~~~~~-----~~~~-g~D~~~~S~~K~~~~~g~~g~l  213 (364)
T d2e7ja1         140 EVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVS-----LKEI-GADFIVGSGHKSMAASGPIGVM  213 (364)
T ss_dssp             CEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBCCC-----HHHH-TCSEEEEEHHHHSSCCSSCEEE
T ss_pred             CceEEEeecCCCCCceeecchhheeccccccchhhccccchhhhhhhc-----cccc-ccceeeeccccccCCCCCEEEE
Confidence            356788899999999999999999999999999999999999888765     2222 3999999999999999889988


Q ss_pred             EeeCcccccccccCCCCccCCCCceecCCCCCC--hHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcC
Q 048438           84 WATNPEYLKNKATESKPVVDYKDWQITLSRSFR--SLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFP  161 (239)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~  161 (239)
                      +.++ +++.......... ..............  ...+..++..+ .+. .+..++..+.++++.+.|.++ |+.++.+
T Consensus       214 ~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~-~~~~~~~~~~~~~~~~~l~~~-g~~~~~~  288 (364)
T d2e7ja1         214 GMKE-EWAEIVLRRSEKY-KNKEVELLGCTARGATIITLMASFPHV-RER-IKRWDEEVEKARRFAAEMEKL-GIKQLGD  288 (364)
T ss_dssp             EECT-TTTTTTTCBCSSC-TTSBGGGTTCCCCSHHHHHHHHHHHHH-HHH-GGGHHHHHHHHHHHHHHHHHT-TCEEESS
T ss_pred             EECH-HHHHHHHhhcccc-CcccccccccccchhHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHc-CCeecCC
Confidence            8754 3333221110000 00111111111111  12222233221 111 122344456788899999887 7777754


Q ss_pred             C--CeeEEEEEE
Q 048438          162 C--HFAVVCFRV  171 (239)
Q Consensus       162 ~--~~~iv~f~~  171 (239)
                      .  ..+++.+..
T Consensus       289 ~~~~~~~~~~~~  300 (364)
T d2e7ja1         289 NPHNHDLMFFHA  300 (364)
T ss_dssp             SSCCSSEEEEEC
T ss_pred             CCCCcceEEEec
Confidence            2  334444443

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.58  E-value=4e-15  Score=126.27  Aligned_cols=198  Identities=13%  Similarity=0.109  Sum_probs=129.9

Q ss_pred             CccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccC--C-CCCcceEEEcCcccCCCccc
Q 048438            3 LIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFID--G-VEGADSFSLNAHKWFFATLD   79 (239)
Q Consensus         3 ~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~--~-~~~~Ds~~~~~hK~l~~P~g   79 (239)
                      ..+.+||.-..-++.|.+-|+++|.++|++||++++||.||+.|.+ .+..++...  + ...+|.++.++.|.+++.  
T Consensus       176 ~~~~~iv~egvySmdGd~apl~~l~~L~~~y~~~L~vDeAHs~Gv~-G~~G~G~~~~~~~~~~~di~~gTlsKa~g~~--  252 (396)
T d2bwna1         176 AAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMY-GPRGAGVAERDGLMHRIDIFNGTLAKAYGVF--  252 (396)
T ss_dssp             TSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTS-STTSCCHHHHHTCGGGCSEEEEESSSTTCSC--
T ss_pred             cCceeEEEEeeccCcccccccHhHHHHhhhhcceeeeccceeeeee-ccccccchhhcCCceeeeeeeeccccccccc--
Confidence            3566777787889999999999999999999999999999999976 333332211  1 134899999999998875  


Q ss_pred             ceEEEeeCcc---cccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 048438           80 CCCLWATNPE---YLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKR  155 (239)
Q Consensus        80 ~g~l~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g  155 (239)
                       |.+++.+.+   ++.....         .+.+..+.+ ..+.....+++.+..+..+++..+.+.+++++++.+.+. |
T Consensus       253 -Gg~v~~~~~~i~~l~~~~~---------~~ifStalpp~~~aa~~~al~i~~~~~~~~~r~~l~~~~~~~~~~l~~~-g  321 (396)
T d2bwna1         253 -GGYIAASARMVDAVRSYAP---------GFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL-G  321 (396)
T ss_dssp             -CEEEEECHHHHHHHHHHCH---------HHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH-T
T ss_pred             -ccccchhHHHHHHHHhhcc---------hhhhcccCcHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhc-C
Confidence             333444433   3322211         011111222 112223334444443444555566778899999999885 7


Q ss_pred             eEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHH-hcCcE---EEEEEEECCEeEEEEEec
Q 048438          156 FEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESIN-ASGKA---YMTNVVLGGIYAIRFATG  231 (239)
Q Consensus       156 ~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~---~~~~~~~~g~~~lR~~~~  231 (239)
                      +.+. +..++|+++.+..                       ++....+.++|. ++|.+   +.+|++..|...+|++++
T Consensus       322 ~~~~-~~~spIvpv~ig~-----------------------~~~~~~~a~~lL~e~Gi~v~~i~~PtVp~g~~rlRi~ls  377 (396)
T d2bwna1         322 MPII-DHGSHIVPVVIGD-----------------------PVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPS  377 (396)
T ss_dssp             CCBC-CCSSSCEEEECCC-----------------------HHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCC
T ss_pred             CCcC-CCCCCEEEEEeCC-----------------------HHHHHHHHHHHHHhCCEEEEEECCCcCCCCCeeEEEEeC
Confidence            7765 4578899988754                       234446666655 45664   333455678889999999


Q ss_pred             CCCCCcC
Q 048438          232 ATLTEER  238 (239)
Q Consensus       232 ~~~t~~~  238 (239)
                      +.+|.+|
T Consensus       378 a~ht~ed  384 (396)
T d2bwna1         378 PVHDLKQ  384 (396)
T ss_dssp             TTSCHHH
T ss_pred             ccCCHHH
Confidence            9999865

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=8e-15  Score=124.97  Aligned_cols=198  Identities=17%  Similarity=0.098  Sum_probs=127.6

Q ss_pred             CccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCccccc---ccCCCCCcceEEEcCcccCCCccc
Q 048438            3 LIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRH---FIDGVEGADSFSLNAHKWFFATLD   79 (239)
Q Consensus         3 ~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~---~~~~~~~~Ds~~~~~hK~l~~P~g   79 (239)
                      ....+|+.-..-++.|.+.||++|.++|++||++++||.||+++.+-.. .+.   .......+|.++.++.|.++++.|
T Consensus       176 ~~~~liv~egv~s~~G~~~~L~~l~~L~~~~~a~LivDeah~~g~~g~~-G~G~~~~~~~~~~~dii~~tl~Ka~gg~~G  254 (401)
T d1fc4a_         176 ARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGEN-GRGSHEYCDVMGRVDIITGTLGKALGGASG  254 (401)
T ss_dssp             CSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTT-SCCHHHHTTCTTCCSEEEEESSSTTCSSSC
T ss_pred             cCceEEEEcCCCCCCCchhhhhHHHHHHhhcCcEEEehhhhccccccCC-CCccchhccCCCCCeEEEeecccccccCCc
Confidence            3445666666667899999999999999999999999999999866322 121   111123599999999999976653


Q ss_pred             ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChH---HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCe
Q 048438           80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSL---KLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRF  156 (239)
Q Consensus        80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~  156 (239)
                       | ++..+.+.........        .....+....+.   +...+++.+.  ...++.++..++.+++++.+.+. ++
T Consensus       255 -g-~v~g~~~~~~~l~~~~--------~~~~~s~~l~p~~~~aa~~~l~~~~--~~~~~~~~l~~~~~~~~~~l~~~-g~  321 (401)
T d1fc4a_         255 -G-YTAARKEVVEWLRQRS--------RPYLFSNSLAPAIVAASIKVLEMVE--AGSELRDRLWANARQFREQMSAA-GF  321 (401)
T ss_dssp             -E-EEEECHHHHHHHHHHC--------HHHHHSCCCCHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred             -c-cccCCHHHHHHHHcCC--------hhhhhcCCCCHHHHHHHHhhhcccc--cCHHHHHHHHHHHHHHHhhhccc-CC
Confidence             3 3444443332221000        001112222222   2222333221  22456677889999999999886 76


Q ss_pred             EEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEE---EEEEEECCEeEEEEEecCC
Q 048438          157 EVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAY---MTNVVLGGIYAIRFATGAT  233 (239)
Q Consensus       157 ~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~---~~~~~~~g~~~lR~~~~~~  233 (239)
                      .+. ..+++|+.+.+.+                       +.....+.++|.++|.+.   ..+++..|...||++++..
T Consensus       322 ~~~-~~~~pIv~v~~~~-----------------------~~~a~~~~~~L~~~Gi~v~~i~~PtVp~g~~~lRi~~~a~  377 (401)
T d1fc4a_         322 TLA-GADHAIIPVMLGD-----------------------AVVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMSAA  377 (401)
T ss_dssp             CBC-CSSSSEEEEEEEC-----------------------HHHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEECCTT
T ss_pred             ccC-CCCCCEEEEEECC-----------------------HHHHHHHHHHHHHCCceEEeECCCCCCCCCceEEEEECCC
Confidence            654 4567888887754                       234457788888887763   2335567888899999999


Q ss_pred             CCCcC
Q 048438          234 LTEER  238 (239)
Q Consensus       234 ~t~~~  238 (239)
                      +|++|
T Consensus       378 hT~ed  382 (401)
T d1fc4a_         378 HTPEQ  382 (401)
T ss_dssp             CCHHH
T ss_pred             CCHHH
Confidence            98864

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=4.1e-15  Score=126.08  Aligned_cols=194  Identities=16%  Similarity=0.104  Sum_probs=128.8

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCccccc--ccCCCCCcceEEEcCcccCCCcccceE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRH--FIDGVEGADSFSLNAHKWFFATLDCCC   82 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~--~~~~~~~~Ds~~~~~hK~l~~P~g~g~   82 (239)
                      ..+|+.-...++.|.+-|+++|.++|++||++++||.||+.+.+--. .+.  ...++ ..|.+..++-|.++++.  |+
T Consensus       168 ~~~vv~e~v~s~~G~i~pl~~l~~l~~~~~~~livDeah~~gv~G~~-g~G~~~~~~~-~~~~~~~t~~ka~g~~G--g~  243 (383)
T d1bs0a_         168 QQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQ-GRGSCWLQKV-KPELLVVTFGKGFGVSG--AA  243 (383)
T ss_dssp             CEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGG-GCCHHHHTTC-CCSEEEEESSSTTSSCC--EE
T ss_pred             ceEEEecCCCCCCCcccchhHHHHHHHhcCcEEEeecceeeeecCCc-ccchHHHcCC-ccccccccccccccccc--cc
Confidence            45677777788999999999999999999999999999999877432 222  12233 37788888999987753  33


Q ss_pred             EEeeCc--ccccccccCCCCccCCCCceecCCCCCCh---HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438           83 LWATNP--EYLKNKATESKPVVDYKDWQITLSRSFRS---LKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE  157 (239)
Q Consensus        83 l~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~  157 (239)
                      +.....  +++.....           ..-.+.....   .+...+++.+-....+++..+..++..++.+.|.+. |+.
T Consensus       244 v~~~~~~~~~l~~~~~-----------~~~~s~~~~p~~~aa~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~-g~~  311 (383)
T d1bs0a_         244 VLCSSTVADYLLQFAR-----------HLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDL-PFT  311 (383)
T ss_dssp             EEECHHHHHHHHHHCH-----------HHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTS-SCE
T ss_pred             cccchhHHHHHHhhch-----------hhhhcccccchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhc-CCc
Confidence            333221  23322211           0111112111   222233443333445667777889999999999886 787


Q ss_pred             EEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEE---EEEEEECCEeEEEEEecCCC
Q 048438          158 VVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAY---MTNVVLGGIYAIRFATGATL  234 (239)
Q Consensus       158 ~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~---~~~~~~~g~~~lR~~~~~~~  234 (239)
                      +. +..++|+++.+.+                       ++....+.++|.++|.+.   ..+++..|...+|++++..+
T Consensus       312 ~~-~~~s~Ii~v~~g~-----------------------~~~a~~~~~~L~~~Gi~v~~~~~PtVp~g~~~lRi~~~a~h  367 (383)
T d1bs0a_         312 LA-DSCSAIQPLIVGD-----------------------NSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAH  367 (383)
T ss_dssp             EC-SCCSSBCCEEEES-----------------------HHHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCCTTC
T ss_pred             cC-CCCCCEEEEEECC-----------------------HHHHHHHHHHHHHCCceEEEEcCCCCCCCCceEEEEeCCCC
Confidence            64 5567888777754                       233457788888887752   33455678899999999999


Q ss_pred             CCcC
Q 048438          235 TEER  238 (239)
Q Consensus       235 t~~~  238 (239)
                      |.+|
T Consensus       368 t~ed  371 (383)
T d1bs0a_         368 EMQD  371 (383)
T ss_dssp             CHHH
T ss_pred             CHHH
Confidence            9875

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

Probab=99.50  E-value=2.3e-14  Score=124.07  Aligned_cols=152  Identities=9%  Similarity=-0.028  Sum_probs=98.7

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccC--C-----CCCcceEEEcCcccCCC
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFID--G-----VEGADSFSLNAHKWFFA   76 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~--~-----~~~~Ds~~~~~hK~l~~   76 (239)
                      .|..+++++.+|+.|.+.|+++|+++||++|+++|||+||+++....+..+....  +     ...+|++++|+||++++
T Consensus       173 ~~~~v~v~~~~~~~G~~~dl~~I~~ia~~~g~~l~vD~A~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~  252 (462)
T d1c4ka2         173 RPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAG  252 (462)
T ss_dssp             CCBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSC
T ss_pred             CCceeEEEEeeeeccchhhHHHHHHHHHHcCCEEEEechhhccccccCcCCcchhhccccccccCCccEEEEecCccccc
Confidence            4567778889999999999999999999999999999999999887664432111  1     12479999999999999


Q ss_pred             cccceEEEeeCcccccccccCCC-CccCCCCceecCCCC-CC-hHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC
Q 048438           77 TLDCCCLWATNPEYLKNKATESK-PVVDYKDWQITLSRS-FR-SLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD  153 (239)
Q Consensus        77 P~g~g~l~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~-~~-~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~  153 (239)
                      +.+++++.+++. .+........ ..........+.+.+ +. ...+-.+...+..+..++..++..++++++++++.++
T Consensus       253 ~~~g~ll~~~~~-~~~~~~~~~~~~~~~~~~~~~~t~sp~~~~~asl~~a~~~~~~~~g~~l~~~~~~~a~~~r~~l~~~  331 (462)
T d1c4ka2         253 FSQTSQIHKKDS-HIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKA  331 (462)
T ss_dssp             CTTCEEEEEECG-GGTTSTTCCCHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccceEEEEeccc-cccccchhhhHHHHHHhhhhcccCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            888877777643 2222110000 000000000111111 11 1222233444555666777888889999999999887


Q ss_pred             CCe
Q 048438          154 KRF  156 (239)
Q Consensus       154 ~g~  156 (239)
                      .+.
T Consensus       332 ~~~  334 (462)
T d1c4ka2         332 GSM  334 (462)
T ss_dssp             TCS
T ss_pred             hhh
Confidence            554

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=99.49  E-value=5e-14  Score=115.39  Aligned_cols=193  Identities=16%  Similarity=0.080  Sum_probs=118.5

Q ss_pred             EEEEEecCCCC--cccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCC-CCCcceEEEcCcccCCCcccceE
Q 048438            6 LFLCATIGTTA--ITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDG-VEGADSFSLNAHKWFFATLDCCC   82 (239)
Q Consensus         6 ~~vv~t~gtt~--~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~-~~~~Ds~~~~~hK~l~~P~g~g~   82 (239)
                      .++..+..+..  .+.++++.++.++|++||+++|+|++|+++............. ....+.++.+.+|++..+.  +.
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  215 (345)
T d1v72a1         138 ACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLAA--EA  215 (345)
T ss_dssp             EEEEEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGGTCSSC--EE
T ss_pred             eeeeeeccccccccccchhhhhHHHHHHhcCceeeecccccceeccccccCHHHhhccccccccccCccccccccc--cc
Confidence            34444444332  3446788999999999999999999998765544321110111 1136677777777655443  33


Q ss_pred             EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcCC
Q 048438           83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPC  162 (239)
Q Consensus        83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~~  162 (239)
                      ...............        ......+........+.....+.....++...+..++.+++.+.+.+++++++..+.
T Consensus       216 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~  287 (345)
T d1v72a1         216 IVLFNTSLATEMSYR--------RKRAGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGGT  287 (345)
T ss_dssp             EEESSGGGHHHHHHH--------HHHTTCCCSSTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEESCC
T ss_pred             cccchhhhhhhcccc--------ccccccccchhhHHhhhhHHHHHHhhhhhhccchhhHHHHHHHHHHhcCCcEeccCC
Confidence            333222211111000        000111122233344445555666677778888889999999999999999999888


Q ss_pred             CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCCcC
Q 048438          163 HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTEER  238 (239)
Q Consensus       163 ~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~  238 (239)
                      .+|+|+|.+++                            .+.++|.++|..+.  ....+...||++++..+|.+|
T Consensus       288 ~~niv~~~~~~----------------------------~~~~~L~~~gi~v~--~~~~~~~~lR~~~~~~~T~ed  333 (345)
T d1v72a1         288 EANILFCRLDS----------------------------AMIDALLKAGFGFY--HDRWGPNVVRFVTSFATTAED  333 (345)
T ss_dssp             CSSEEEEEECH----------------------------HHHHHHHHTTCBCB--CSSSSTTEEEEECCTTCCHHH
T ss_pred             CccEEEEEcCH----------------------------HHHHHHHHcCCCcc--ccCCCCCEEEEECCCCCCHHH
Confidence            99999998753                            34556777887643  223466799999766666553

>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus alcalophilus [TaxId: 1445]

Probab=99.36  E-value=8.3e-14  Score=116.25  Aligned_cols=68  Identities=1%  Similarity=-0.271  Sum_probs=56.8

Q ss_pred             EecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEEe
Q 048438           10 ATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWA   85 (239)
Q Consensus        10 ~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~   85 (239)
                      .++.+|.+|.+.|+.+|+++||++|+.++|||+|+.+..+++     ++.++ +|+++++.||++  |.+.|+++.
T Consensus       142 ~~~~~~~tg~~~~~~~i~~~~~~~g~l~ivDavqs~g~~~id-----~~~~~-vd~~~~~~~k~~--~~~~~~~~~  209 (360)
T d1w23a_         142 DAYLHITSNNTIYGTQYQNFPEINHAPLIADMSSDILSRPLK-----VNQFG-MIYAGAQKNLGP--SGVTVVIVK  209 (360)
T ss_dssp             EEEEEEESEETTTTEECSSCCCCCSSCEEEECTTTTTSSCCC-----GGGCS-EEEEETTTTTSC--TTCEEEEEE
T ss_pred             cceeEecCCccccceeeeeccccceeeEEeeccccccccccc-----ccccc-ceEEeecccccc--CCcceeeEe
Confidence            567788999999999999999999999999999999999988     55553 889888888863  445566554

>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]

Probab=99.34  E-value=3.9e-13  Score=112.40  Aligned_cols=193  Identities=10%  Similarity=-0.006  Sum_probs=106.1

Q ss_pred             ecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEEeeCccc
Q 048438           11 TIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWATNPEY   90 (239)
Q Consensus        11 t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~   90 (239)
                      ++.++.||.+.|+.+|.++|+++|++++|||+++++..+++     ++.   +|...+++||+++.|.+.++++. .+..
T Consensus       143 ~~v~~~tg~~~~~~~i~~~~~~~~al~~vDavss~g~~~id-----~~~---~di~~~s~~k~~~~~~~~~~~~~-~~~~  213 (361)
T d2c0ra1         143 AYLHLTSNETIEGAQFKAFPDTGSVPLIGDMSSDILSRPFD-----LNQ---FGLVYAGAQKNLGPSGVTVVIVR-EDLV  213 (361)
T ss_dssp             EEEEEESEETTTTEECSSCCCCTTSCEEEECTTTTTSSCCC-----GGG---CSEEEEETTTTTCCSSCEEEEEE-GGGS
T ss_pred             eEEEEecccceecceEEEeeccCCceEEEEeeccccccccc-----ccc---ceeEEEecccccccccCcEEEEE-hHHh
Confidence            45567889999999999999999999999999999999987     443   56666778999876665555444 3222


Q ss_pred             ccccccCCCCccCCCCceecCCCC--CCh---HHHHHHHH-HhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE-EcCC-
Q 048438           91 LKNKATESKPVVDYKDWQITLSRS--FRS---LKLWFVIR-NYGMENLRHFLRSHVNMARLFERLVSGDKRFEV-VFPC-  162 (239)
Q Consensus        91 l~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~l~-~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~-~~~~-  162 (239)
                      .... .......++..+.....+.  ...   ........ .....+...+.++....+..+.+.......... ..++ 
T Consensus       214 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (361)
T d2c0ra1         214 AESP-KHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVD  292 (361)
T ss_dssp             SSCC-TTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGG
T ss_pred             hhCc-cccccccccccccccccccccccceeeehhhhHHHhhhhccchHHHHHHHHHHHHHhhhhhhhcccccccCCChh
Confidence            1111 1101111111111111111  111   11111111 111223344555555555566565555433322 2222 


Q ss_pred             -C-eeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCCcC
Q 048438          163 -H-FAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTEER  238 (239)
Q Consensus       163 -~-~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~  238 (239)
                       + ..+++|.+++.                       .....+.+.|.+.|.+..++..--|  -+|+++++.+|.||
T Consensus       293 ~rS~~~~~~~~~~~-----------------------~~~~~~~~~L~~~GI~~~~G~~~~g--~~RIs~~~~~~~ed  345 (361)
T d2c0ra1         293 SRSDMNITFRLASE-----------------------ELEKEFVKASEQEGFVGLKGHRSVG--GLRASIYNAVPYES  345 (361)
T ss_dssp             GBCSSEEEEECSCH-----------------------HHHHHHHHHHHHTTEESCBCCTTTC--SEEEECCTTSCHHH
T ss_pred             hccceEEEEECCCc-----------------------ccHHHHHHHHHHCCCEEecCCCcCC--eEEEEecCCCCHHH
Confidence             2 35788888641                       2223666777777765444311112  38999998887654

>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Escherichia coli [TaxId: 562]

Probab=99.27  E-value=7.8e-13  Score=109.79  Aligned_cols=196  Identities=10%  Similarity=-0.051  Sum_probs=114.8

Q ss_pred             EEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEEe
Q 048438            6 LFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWA   85 (239)
Q Consensus         6 ~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~   85 (239)
                      -++++++.+|.||+..|+.++.  ++.+++.+++|++++.+..+++.     .   .+|++.+++||+++.|.|.+++++
T Consensus       140 ~~v~v~~~~~~t~~~~~~~~i~--~~~~~~~v~vDa~~~~~~~~vd~-----~---~~dv~~~ss~k~~~~~~~~~~~~~  209 (360)
T d1bjna_         140 NAAYMHYCPNETIDGIAIDETP--DFGADVVVAADFSSTILSRPIDV-----S---RYGVIYAGAQKNIGPAGLTIVIVR  209 (360)
T ss_dssp             SCSCEEECSEETTTTEECCCCC--CCCTTCCEEEECTTTTTSSCCCG-----G---GCSEEEEETTTTTSSTTCEEEEEE
T ss_pred             ceeEEEecccccccCcccccee--cccccceeeeeeeccccceeeee-----c---cceeEEEEcccccccCCCceeEee
Confidence            3566778889999999998774  57789999999999999888873     2   389999999999999999888887


Q ss_pred             eCcccccccccCCCCccCCC---Cc-eecCCCCCCh--HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Q 048438           86 TNPEYLKNKATESKPVVDYK---DW-QITLSRSFRS--LKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVV  159 (239)
Q Consensus        86 ~~~~~l~~~~~~~~~~~~~~---~~-~~~~~~~~~~--~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~  159 (239)
                      .... ....... .......   .+ ..........  ......+......+.+...++..+++++..+.+.........
T Consensus       210 ~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (360)
T d1bjna_         210 EDLL-GKANIAC-PSILDYSILNDNGSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSDFYRND  287 (360)
T ss_dssp             GGGC-SCCCTTS-CGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEECC
T ss_pred             ehhh-hhccccC-CcchhhHHHHhhhhhccccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhcccccccc
Confidence            4321 1111100 0000000   00 0000011101  111111222223355566666667777777777765343333


Q ss_pred             cCC---CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCC
Q 048438          160 FPC---HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTE  236 (239)
Q Consensus       160 ~~~---~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~  236 (239)
                      .++   ...+++|.+++..                       ....+.+.|.++|....++  .+...-+|+++++.+|.
T Consensus       288 ~~~~~rs~~v~~f~~~~~~-----------------------~~~~~~~~l~~~Gi~~~~G--~~~~g~~Ris~~~~~t~  342 (360)
T d1bjna_         288 VAKRNRSRMNVPFQLADSA-----------------------LDKLFLEESFAAGLHALKG--HRVVGGMRASIYNAMPL  342 (360)
T ss_dssp             BCGGGBCSSEEEEEESSGG-----------------------GHHHHHHHHHHTTEECCBC--CTTTCSEEEECCTTSCH
T ss_pred             CCcccccceEEEEEcCCcc-----------------------cHHHHHHHHHHCCCEeecC--CCccCeEEEEecCCCCH
Confidence            222   3468999997521                       1125566677777654432  11112389998887776


Q ss_pred             cC
Q 048438          237 ER  238 (239)
Q Consensus       237 ~~  238 (239)
                      +|
T Consensus       343 ed  344 (360)
T d1bjna_         343 EG  344 (360)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

Probab=99.18  E-value=3.4e-11  Score=97.10  Aligned_cols=193  Identities=16%  Similarity=0.067  Sum_probs=117.0

Q ss_pred             cEEEEEecCCCCcccc---cChhHHHHHHHHhCCEEEEecccccccccCcccccccC-CCCCcceEEEcCcccCCCcccc
Q 048438            5 PLFLCATIGTTAITAV---DPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFID-GVEGADSFSLNAHKWFFATLDC   80 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i---~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~-~~~~~Ds~~~~~hK~l~~P~g~   80 (239)
                      +..++.+...++.|.+   +++.++.++|+++|.++|+|.+++++.+.......... .....+....+..|..+.+.+ 
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  209 (340)
T d1svva_         131 IPKLVYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGE-  209 (340)
T ss_dssp             EEEEEEEESSCTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCSSCE-
T ss_pred             cceeeeecccccccccccHHHhhhhhcccccccceeeeeccceeeeecccccccccccccccceeeecCCccccccccc-
Confidence            4445555555566665   45667789999999999999999887765542211000 001256778888887655532 


Q ss_pred             eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHH-HHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Q 048438           81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLW-FVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVV  159 (239)
Q Consensus        81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~  159 (239)
                       .+..............         .....+....+.... .++..+.........++...+++++.+.|++. |++++
T Consensus       210 -~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~  278 (340)
T d1svva_         210 -ALIILNDALKPNARHL---------IKQRGALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGLEAC-GIRLA  278 (340)
T ss_dssp             -EEEECSGGGCTTHHHH---------HHHTTCCCTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHT-TCCBS
T ss_pred             -cccccchhhhhhhhhh---------cccccCccchhhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHhcC-CCeee
Confidence             2333222222111100         000111111112222 23334455566778888889999999999885 99998


Q ss_pred             cCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCCcC
Q 048438          160 FPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTEER  238 (239)
Q Consensus       160 ~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~  238 (239)
                      .|+++|+|.+.+++                            ...++|.+++.+....+...+..++|+|++ +.|++|
T Consensus       279 ~p~~~~~v~~~~~~----------------------------~~~~~l~~~~~~~~~~~~~~~~~~vR~s~~-~~~t~e  328 (340)
T d1svva_         279 WPSASNQLFPILEN----------------------------TMIAELNNDFDMYTVEPLKDGTCIMRLCTS-WATEEK  328 (340)
T ss_dssp             SCCSSSEECBEEEH----------------------------HHHHHHTTTEECEEEEEETTTEEEEEEECC-TTCCHH
T ss_pred             cCCCceEEEEeCCH----------------------------HHHHHHHHhhhhhcccccCCCCcEEEEECC-CCCCHH
Confidence            88899999888753                            233456666666666667788999999965 555544

>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.15  E-value=1.3e-10  Score=97.39  Aligned_cols=157  Identities=13%  Similarity=0.075  Sum_probs=108.0

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL   83 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l   83 (239)
                      +|-+|+  +|.+......|++++.++|++.|+++++|+||-.|.+....+..   -++.+|+++.+.||.|.+|.| |++
T Consensus       165 kPklIi--~G~S~y~r~~d~~~~reiad~vga~l~~D~aH~~GLIa~g~~~s---P~~~aDvvt~tThKtlrGPrg-giI  238 (416)
T d1dfoa_         165 KPKMII--GGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPN---PVPHAHVVTTTTHKTLAGPRG-GLI  238 (416)
T ss_dssp             CCSEEE--EECSSCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCC---CTTTSSEEEEESSSTTCCCSC-EEE
T ss_pred             ccceEE--ecccccccccCHHHHHHHHHhcCceEEcchhhhhcceeccccCC---cccccceeeeehhhcccCCCc-eEE
Confidence            355554  45677888899999999999999999999999988765443322   233599999999999999986 555


Q ss_pred             EeeCc--ccccccccCCCCccCCCCceecCCCCC-ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc
Q 048438           84 WATNP--EYLKNKATESKPVVDYKDWQITLSRSF-RSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF  160 (239)
Q Consensus        84 ~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~  160 (239)
                      +.++.  ++.+.....   .   . ...+++-.. ..++...+++......+++..++..++++.|.+.|.+. |++++.
T Consensus       239 ~~~~~~~~~~~~i~~a---v---f-Pg~qggp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La~~L~~~-G~~iv~  310 (416)
T d1dfoa_         239 LAKGGSEELYKKLNSA---V---F-PGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLER-GYKVVS  310 (416)
T ss_dssp             EESSCCHHHHHHHHHH---H---T-TTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGG
T ss_pred             EeccchHhHHHHHHhh---h---C-cccccCccHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhC-Cccccc
Confidence            55432  222221100   0   0 011222222 22344455665555677888999999999999999996 999986


Q ss_pred             C-CCeeEEEEEEcCC
Q 048438          161 P-CHFAVVCFRVSPL  174 (239)
Q Consensus       161 ~-~~~~iv~f~~~~~  174 (239)
                      . .+..+|.+.+.+.
T Consensus       311 ggTdnHlvlvdl~~~  325 (416)
T d1dfoa_         311 GGTDNHLFLVDLVDK  325 (416)
T ss_dssp             GSCSSSEEEEECGGG
T ss_pred             CCCCCceeEEEeccc
Confidence            3 5677888887653

>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=99.09  E-value=6.7e-10  Score=94.17  Aligned_cols=164  Identities=11%  Similarity=0.068  Sum_probs=105.4

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLW   84 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~   84 (239)
                      |-+|  .+|.+..-...|++++.+||++.|+++++|+||-+|.+....+..-+.   .+|+++++.||.|.+|.| |+++
T Consensus       177 PklI--i~G~S~y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sP~~---~aDvvt~tTHKTlrGPrg-GiIl  250 (463)
T d2a7va1         177 PRLI--IAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK---HADIVTTTTHKTLRGARS-GLIF  250 (463)
T ss_dssp             CSEE--EECCSSCCSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG---TCSEEEEESSGGGCSCSC-EEEE
T ss_pred             CceE--EecccccccccCHHHHHHHhhcccceEEechhhhhHHhhhhhhcChhh---hhhhhhchhhhhhcCCCc-eEEE
Confidence            4444  356677777889999999999999999999999988776544332233   499999999999999996 5666


Q ss_pred             eeCccc-cccc-c----cCCCCccCCC-CceecCCCCC-ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCe
Q 048438           85 ATNPEY-LKNK-A----TESKPVVDYK-DWQITLSRSF-RSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRF  156 (239)
Q Consensus        85 ~~~~~~-l~~~-~----~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~  156 (239)
                      .++..- ..+. .    .+....++.. --..+++-.. ..+++..+++......+++..++..++|+.|.+.|.+. |+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~h~iAa~Ava~~ea~~~~fk~Ya~qVv~NAk~La~~L~~~-G~  329 (463)
T d2a7va1         251 YRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER-GY  329 (463)
T ss_dssp             EECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred             EcccccccccccCccchhHHHHHhhhhcCcccchhhhhhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhC-CC
Confidence            654210 0000 0    0000000000 0011222222 22344444554334467888999999999999999986 99


Q ss_pred             EEEcC-CCeeEEEEEEcCCC
Q 048438          157 EVVFP-CHFAVVCFRVSPLP  175 (239)
Q Consensus       157 ~~~~~-~~~~iv~f~~~~~~  175 (239)
                      +++.. .+..+|.+.+.+.+
T Consensus       330 ~vv~ggTdnHlvlvdl~~~~  349 (463)
T d2a7va1         330 SLVSGGTDNHLVLVDLRPKG  349 (463)
T ss_dssp             EEGGGSCSSSEEEEECTTTT
T ss_pred             eeecCCCCCceeeeeccccC
Confidence            99864 56778888876543

>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.08  E-value=4.3e-10  Score=93.85  Aligned_cols=155  Identities=11%  Similarity=0.124  Sum_probs=105.2

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLW   84 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~   84 (239)
                      |-+|  .+|.+..-...|++++.+||++.|+++++|+||-.|.+....+..-+   +.+|+++.+.||.|.+|.|. +++
T Consensus       164 PklI--i~G~S~y~r~~d~~~~reIad~vga~l~~D~aH~~GLIa~g~~~~P~---~~aDvvt~tThKtlrGPrgg-~I~  237 (405)
T d1kl1a_         164 PKLI--VAAASAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPV---PYAHFVTTTTHKTLRGPRGG-MIL  237 (405)
T ss_dssp             CSEE--EECCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCST---TTCSEEEEESSSTTCCCSCE-EEE
T ss_pred             cceE--EecccccccccChHHHHHHHhhhCCEEecchhhHhhhhhhhhcCChh---hhhhheeccccccccCCCCc-eEE
Confidence            4444  34666677777899999999999999999999998877654433223   45999999999999999974 555


Q ss_pred             eeCcccccccccCCCCccCCCCceecCCCCCC-hHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcC-C
Q 048438           85 ATNPEYLKNKATESKPVVDYKDWQITLSRSFR-SLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFP-C  162 (239)
Q Consensus        85 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~-~  162 (239)
                      .+ .++.+.....   .+    -..+++-... ..+...+++......+++..++..++|+.|.+.|.+. |++++.. .
T Consensus       238 ~~-~~~~~~i~~a---vf----Pg~qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~~-G~~vv~ggT  308 (405)
T d1kl1a_         238 CQ-EQFAKQIDKA---IF----PGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE-GFTLVSGGT  308 (405)
T ss_dssp             EC-HHHHHHHHHH---HT----TTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSC
T ss_pred             ec-chhHHHHHhh---hC----cccccCcchhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcC-CceeecCCC
Confidence            44 3333322110   00    0112222222 2333444544334567888899999999999999985 9999864 5


Q ss_pred             CeeEEEEEEcCC
Q 048438          163 HFAVVCFRVSPL  174 (239)
Q Consensus       163 ~~~iv~f~~~~~  174 (239)
                      +..+|...+.+.
T Consensus       309 d~H~vlvdl~~~  320 (405)
T d1kl1a_         309 DNHLLLVDLRPQ  320 (405)
T ss_dssp             SSSEEEEECGGG
T ss_pred             ccceeecccccc
Confidence            677888887654

>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.04  E-value=1e-09  Score=93.29  Aligned_cols=162  Identities=9%  Similarity=0.077  Sum_probs=105.0

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLW   84 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~   84 (239)
                      |-+|  .+|.+..-...|++++.+||++.|+++++|+||-+|.+....+..-+.   .+|+++.+.||.|.+|.| |+++
T Consensus       181 PklI--i~G~S~y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sPl~---~aDvvt~tTHKtlrGPrg-GiI~  254 (470)
T d1rv3a_         181 PKLI--IAGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE---HCHVVTTTTHKTLRGCRA-GMIF  254 (470)
T ss_dssp             CSEE--EECCSSCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG---TCSEEEEESSGGGCCCSC-EEEE
T ss_pred             cceE--eechhhccccCCHHHHHHHHhccCCeEEecchhhhhhccccccCChhh---eeeeeeeehhhhccCCcc-eEEE
Confidence            4444  356677777889999999999999999999999888765443332243   499999999999999997 6666


Q ss_pred             eeCcc-cccccccCCCCccCC---CCc----eecCCCCC-ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 048438           85 ATNPE-YLKNKATESKPVVDY---KDW----QITLSRSF-RSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKR  155 (239)
Q Consensus        85 ~~~~~-~l~~~~~~~~~~~~~---~~~----~~~~~~~~-~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g  155 (239)
                      .+++. -..+... .....++   .+.    .++++-.. ..+++..+++......+.+..++..++|+.|.+.|.+. |
T Consensus       255 ~~~~~~~~~~~~~-~~~~~~~~~~i~~avFPg~qggph~~~IAa~Ava~~ea~~~~fk~Ya~qvv~NAk~La~~L~~~-G  332 (470)
T d1rv3a_         255 YRRGVRSVDPKTG-KEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVEL-G  332 (470)
T ss_dssp             EECSBCC--------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             Ecccccccccccc-chhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhC-C
Confidence            65421 0000000 0000000   000    11122222 22444455655545567889999999999999999986 9


Q ss_pred             eEEEcC-CCeeEEEEEEcCC
Q 048438          156 FEVVFP-CHFAVVCFRVSPL  174 (239)
Q Consensus       156 ~~~~~~-~~~~iv~f~~~~~  174 (239)
                      ++++.. .+..++.+.+.+.
T Consensus       333 ~~v~~ggTdnHlvlvdl~~~  352 (470)
T d1rv3a_         333 YKIVTGGSDNHLILVDLRSK  352 (470)
T ss_dssp             CEEGGGSCSSSEEEEEGGGG
T ss_pred             ceeccCCCCCceEEEeeccc
Confidence            999853 4567777777653

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.01  E-value=6.2e-11  Score=96.65  Aligned_cols=191  Identities=16%  Similarity=0.128  Sum_probs=100.5

Q ss_pred             EEEEEec-CCCCcccc---cChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccce
Q 048438            6 LFLCATI-GTTAITAV---DPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCC   81 (239)
Q Consensus         6 ~~vv~t~-gtt~~G~i---~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g   81 (239)
                      ..++.+. .++..|.+   +++.+|+++|+++|+++|+|++++.+.......... ......+..+++.+|+.++..+.+
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~g~~~~~D~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~  208 (343)
T d1m6sa_         130 SLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVK-EYAGYADSVMFCLSKGLCAPVGSV  208 (343)
T ss_dssp             EEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHH-HHHHTCSEEEEESSSTTCCSSCEE
T ss_pred             cccccccccccCCceecCHHHHHHHHHHHHhcCeEEEeccccccccccccccchh-hhcccccccccccccccccccccc
Confidence            3344444 44555555   456677888899999999999998765533221110 011136777888888877776544


Q ss_pred             EEEeeCcccccccccCCCCccCCCCceecCCCC-CCh-HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Q 048438           82 CLWATNPEYLKNKATESKPVVDYKDWQITLSRS-FRS-LKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVV  159 (239)
Q Consensus        82 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~  159 (239)
                      +..  .++.+......       . .....+.. ... ...+.....    ......+...+..+++.+.+.++.+....
T Consensus       209 ~~~--~~~~~~~~~~~-------~-~~~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (343)
T d1m6sa_         209 VVG--DRDFIERARKA-------R-KMLGGGMRQAGVLAAAGIIALT----KMVDRLKEDHENARFLALKLKEIGYSVNP  274 (343)
T ss_dssp             EEE--CHHHHHHHHHH-------H-HHHTCCCSSTHHHHHHHHHHHH----HSSTTHHHHHHHHHHHHHHHHHHTCBCCG
T ss_pred             ccc--cHHHHhhhHhh-------C-cccccccchhHHHHHhhhhhhh----hhHHHHHHHHHHHHHhhhHHHHhccCccC
Confidence            333  22222111100       0 00001111 111 111111111    11122333445556666666666566555


Q ss_pred             cCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCCc
Q 048438          160 FPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTEE  237 (239)
Q Consensus       160 ~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~  237 (239)
                      .+..+|+|.+.+++...                      ...++.+.|.++|.+..+.    +...+|++++..+|++
T Consensus       275 ~~~~~~~v~~~~~~~~~----------------------~a~~l~~~L~~~Gi~v~~~----~~~~iRi~~~~~~t~e  326 (343)
T d1m6sa_         275 EDVKTNMVILRTDNLKV----------------------NAHGFIEALRNSGVLANAV----SDTEIRLVTHKDVSRN  326 (343)
T ss_dssp             GGCCSSEEEEECTTSSS----------------------CHHHHHHHHHHHTEECEEE----ETTEEEEECCTTSCHH
T ss_pred             CCCCceEEEEEeCCCcc----------------------cHHHHHHHHHHCCCEEecC----CCCEEEEECCCCCCHH
Confidence            56778999999876432                      1236777888888654321    4457899976544443

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.00  E-value=3.3e-09  Score=88.70  Aligned_cols=137  Identities=18%  Similarity=0.233  Sum_probs=99.8

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ce
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CC   81 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g   81 (239)
                      .+-+|.+-.-+|.+..+.||++|+++||++|++++||.+++.+...-+     ++-  +||.++.|..|++++-..  .|
T Consensus       133 ~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vVDnT~atP~~~~P-----l~~--GaDiVvhS~TKyi~GhsDv~~G  205 (380)
T d1ibja_         133 QTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRP-----LEL--GADIVMHSATKFIAGHSDVMAG  205 (380)
T ss_dssp             SEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTTCCG-----GGT--TCSEEEEETTTTTTCSSCCCCE
T ss_pred             CccEEEeccccccccccccHHHHHHHHHHcCCeEEeeccccccccccc-----ccc--CCCEEEecccceeccccCcccc
Confidence            455777888899999999999999999999999999999987655333     221  499999999999988643  45


Q ss_pred             EEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Q 048438           82 CLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVV  159 (239)
Q Consensus        82 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~  159 (239)
                      ++..++..+......          +....|....+...|..++  |.+.+.-|++++.+++..+.+.|++.|.++-+
T Consensus       206 ~v~~~~~~~~~~~~~----------~~~~~G~~l~p~~a~ll~r--gl~Tl~lRm~~~~~nA~~lA~~L~~hp~V~~V  271 (380)
T d1ibja_         206 VLAVKGEKLAKEVYF----------LQNSEGSGLAPFDCWLCLR--GIKTMALRIEKQQENARKIAMYLSSHPRVKKV  271 (380)
T ss_dssp             EEEECSHHHHHHHHH----------HHHHTTCBCCHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHHTCTTCCEE
T ss_pred             ccccchhhHHHHHHh----------hccccCCcCCHHHHHHHHh--cchhhhhhHHHHHHHHHHHHHHHHhCCCeeEE
Confidence            555544322221110          1111233345567777766  56788899999999999999999999887643

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.98  E-value=9.2e-09  Score=86.32  Aligned_cols=149  Identities=16%  Similarity=0.226  Sum_probs=107.4

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ceE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCC   82 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~   82 (239)
                      +-+|.+-.-+|.+..+.||++|+++||++|+.++||.+++.+.+.-+     ++  -+||.+.-|..|++++...  .|+
T Consensus       154 t~~v~~EspsNP~l~v~Di~~ia~ia~~~g~~~vVDnT~atP~~~~P-----l~--~GaDiVihS~TKy~~Ghsdv~~G~  226 (398)
T d1qgna_         154 VNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKA-----LA--LGADLVLHSATKFLGGHNDVLAGC  226 (398)
T ss_dssp             EEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCT-----TT--TTCSEEEECTTTTTTCSSSCCCEE
T ss_pred             ceEEEccCccccccccchHHHHHHHHhhcCCEEEecceeeccccCCc-----hh--hCCCEEEEechhhcCcccceeehh
Confidence            45677788899999999999999999999999999999976654222     11  1499999999999988754  333


Q ss_pred             EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE-EEcC
Q 048438           83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE-VVFP  161 (239)
Q Consensus        83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~-~~~~  161 (239)
                       ++.++.+......          +....|.-..+...|..++  |.+.+.-|++++.+.|..+.+.|++.|.++ |..|
T Consensus       227 -v~~~~~~~~~~~~----------~~~~~G~~l~p~~a~ll~r--gl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yP  293 (398)
T d1qgna_         227 -ISGPLKLVSEIRN----------LHHILGGALNPNAAYLIIR--GMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYP  293 (398)
T ss_dssp             -EEECHHHHHHHHH----------HHHHHCCCCCHHHHHHHHH--HGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECT
T ss_pred             -hcchhhhhhhhhh----------hcccCCCcCCHHHHHHHHh--cchHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCC
Confidence             3344433322210          1111233345566777766  457888999999999999999999999987 4443


Q ss_pred             C----------------CeeEEEEEEcC
Q 048438          162 C----------------HFAVVCFRVSP  173 (239)
Q Consensus       162 ~----------------~~~iv~f~~~~  173 (239)
                      .                ..++++|.+.+
T Consensus       294 gL~s~p~~~~~~~~~~g~g~~~sf~~~g  321 (398)
T d1qgna_         294 GLQSHPEHHIAKKQMTGFGGAVSFEVDG  321 (398)
T ss_dssp             TSSSSTTHHHHHHHCSCCCSEEEEEESS
T ss_pred             CCCCCcchhhhhhhcCCCCceeeeeecC
Confidence            1                14689998875

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

Probab=98.96  E-value=5.6e-09  Score=87.56  Aligned_cols=151  Identities=16%  Similarity=0.284  Sum_probs=108.0

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ceE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCC   82 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~   82 (239)
                      .-+|.+-.-+|.+..+.||++|+++||++|++++||.+++...+.-|    +..   +||.+..|..|++++-..  .|+
T Consensus       149 Tklv~~Esp~NP~l~v~Di~~i~~iA~~~gi~~vvDnT~atP~~~~P----l~~---GaDivihS~TKyi~Ghsdvl~G~  221 (397)
T d1y4ia1         149 TKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQP----LQL---GADIVVHSVTKYINGHGDVIGGI  221 (397)
T ss_dssp             EEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCG----GGG---TCSEEEEETTTTTTCSSCCCCEE
T ss_pred             CcEEEecCCcccceeecccHHHHHHhhcCCceEEecCcccCcccCcc----hhc---CCCEEEEehhhhcCCCcceeeec
Confidence            34677777889999999999999999999999999999987655333    112   499999999999987533  455


Q ss_pred             EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE-cC
Q 048438           83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVV-FP  161 (239)
Q Consensus        83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~-~~  161 (239)
                      +.. +.+++.....        ..+.-..|....+...|..++  |.+.+.-|++++.+.|..+.+.|++.|.++-+ .|
T Consensus       222 v~~-~~~~~~~~r~--------~~~~~~~G~~l~p~~a~l~~r--gl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yP  290 (397)
T d1y4ia1         222 IVG-KQEFIDQARF--------VGLKDITGGCMSPFNAWLTLR--GVKTLGIRMERHCENALKIARFLEGHPSITRVYYP  290 (397)
T ss_dssp             EEE-CHHHHHHHHH--------THHHHTTCCCCCHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECT
T ss_pred             cCC-CHHHHHHHHH--------HHHHhCcCCcCCHHHHHHHHc--CcCcHHHHHHHHHHHHHHHHHHHHhCCCcCeEeCC
Confidence            554 3343332110        000101233455677787776  45677889999999999999999999998644 33


Q ss_pred             -----C-----------CeeEEEEEEcC
Q 048438          162 -----C-----------HFAVVCFRVSP  173 (239)
Q Consensus       162 -----~-----------~~~iv~f~~~~  173 (239)
                           |           ..++++|.+++
T Consensus       291 gl~s~p~h~~~~~~~~g~gg~~sf~~~~  318 (397)
T d1y4ia1         291 GLSSHPQYELGQRQMSLPGGIISFEIAG  318 (397)
T ss_dssp             TSTTCTTHHHHHHHCSSCCSEEEEEETT
T ss_pred             CCCCCccccccccccCCCCeEEEEEecC
Confidence                 1           25799999875

>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]

Probab=98.96  E-value=2.1e-08  Score=82.84  Aligned_cols=188  Identities=11%  Similarity=-0.000  Sum_probs=112.6

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-ccc
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-LDC   80 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~   80 (239)
                      +-+|+++.-+|.||.+.+   +.+|+++|++|++++++|.++................. .-.++..++.|+++.| .-+
T Consensus       145 ~~~v~l~nP~NPtG~~~~~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~-~~~i~~~S~SK~~~l~GlR~  223 (355)
T d1lc5a_         145 LDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDN-PHIWVLRSLTKFYAIPGLRL  223 (355)
T ss_dssp             CCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTC-TTEEEEEESTTTTTCTTTCC
T ss_pred             cceeeeecccCcccccchhhhhhhhhhhccccccccccccceeeeeeeccccccccccc-ccceeecccccccccccccc
Confidence            345666677899999877   67788888999999999999864322111111111111 2447788999997644 336


Q ss_pred             eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Q 048438           81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNY-GMENLRHFLRSHVNMARLFERLVSGDKRFEVV  159 (239)
Q Consensus        81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~  159 (239)
                      |+++..+...........      ..+      ....+....+...+ ..+.+.+..++..+..+++.+.|.+++++++.
T Consensus       224 G~~i~~~~~~~~~~~~~~------~~~------~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  291 (355)
T d1lc5a_         224 GYLVNSDDAAMARMRRQQ------MPW------SVNALAALAGEVALQDSAWQQATWHWLREEGARFYQALCQLPLLTVY  291 (355)
T ss_dssp             EEEECCCHHHHHHHHHHS------CTT------CSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEC
T ss_pred             cceeccchhhhHHHHhhc------CCc------cccccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCcEEC
Confidence            777764321111111000      001      11123333333332 23455666677778888999999999898864


Q ss_pred             cCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEEC--CEeEEEEEec
Q 048438          160 FPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLG--GIYAIRFATG  231 (239)
Q Consensus       160 ~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~--g~~~lR~~~~  231 (239)
                       |...+-+.+.++...                         ..+.++|.++|.+........  +..++|+++.
T Consensus       292 -p~~~~f~~~~~~~~~-------------------------~~~~~~L~~~gv~vr~~~~f~~~~~~~iRis~~  339 (355)
T d1lc5a_         292 -PGRANYLLLRCERED-------------------------IDLQRRLLTQRILIRSCANYPGLDSRYYRVAIR  339 (355)
T ss_dssp             -CCSSSEEEEEESCTT-------------------------CCHHHHHHTTTEECEECTTSTTCCTTEEEEECC
T ss_pred             -CCCCEEEEEECCCCH-------------------------HHHHHHHHHCCcEEEeCccCCCCCCCEEEEEeC
Confidence             666676777765421                         156667887876655443333  3478999975

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

Probab=98.95  E-value=6.5e-09  Score=86.90  Aligned_cols=150  Identities=17%  Similarity=0.291  Sum_probs=107.0

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ceE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCC   82 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~   82 (239)
                      +-+|.+-.-+|.+..+.||++|+++||++|+.++||.+++.+.+.-+    +..   +||.++-|..|++.+-..  .|+
T Consensus       136 t~~v~~EspsNP~l~v~Di~~i~~ia~~~g~~~vVDNT~atP~~~~P----l~~---GaDiVvhS~TKyi~Ghsdv~~G~  208 (384)
T d1cs1a_         136 PKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQNP----LAL---GADLVLHSCTKYLNGHSDVVAGV  208 (384)
T ss_dssp             CSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCG----GGG---TCSEEEEETTTTTTCSSCCCCEE
T ss_pred             ccEEEEeccccccceeccHHHHhhhhhhcCcEEEEeccccCcccccc----ccc---CCCEEEEccccccccCCCccccc
Confidence            34677778889999999999999999999999999999977655333    112   499999999999987643  455


Q ss_pred             EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc-C
Q 048438           83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF-P  161 (239)
Q Consensus        83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~-~  161 (239)
                      +..+++........          +....|....+...|..++  |.+.+.-|++++.+.|..+.+.|++.|.++-+. |
T Consensus       209 vv~~~~~~~~~~~~----------~~~~~G~~~~p~~a~ll~r--gL~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yP  276 (384)
T d1cs1a_         209 VIAKDPDVVTELAW----------WANNIGVTGGAFDSYLLLR--GLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHP  276 (384)
T ss_dssp             EEESSHHHHHHHHH----------HHHHHTCBCCHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECT
T ss_pred             ccCCchhhhhhhhh----------hhhhhhhccccccHHHHhh--ccchhHHHHHHHHHHHHHHHHhcccCCceeeeeec
Confidence            55544332221110          0001122234566677666  567788999999999999999999999986443 3


Q ss_pred             -----C-----------CeeEEEEEEcC
Q 048438          162 -----C-----------HFAVVCFRVSP  173 (239)
Q Consensus       162 -----~-----------~~~iv~f~~~~  173 (239)
                           |           ..++++|.+.+
T Consensus       277 gL~s~p~h~l~~r~~~g~gg~~sf~l~~  304 (384)
T d1cs1a_         277 SLPENQGHEIAARQQKGFGAMLSFELDG  304 (384)
T ss_dssp             TSTTSTTHHHHHHHCSSCCSEEEEEESS
T ss_pred             cccchhHHHHHHhhcCCCcceeEEeecc
Confidence                 1           14699999876

>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase (decarboxylating) subunit 1
species: Thermus thermophilus [TaxId: 274]

Probab=98.95  E-value=7e-09  Score=88.07  Aligned_cols=197  Identities=17%  Similarity=0.117  Sum_probs=117.2

Q ss_pred             EEEEEecCCCCcccccChhHHHHHHHHhCCEEEEeccccc-ccccCcccccccCCCCCcceEEEcCcccCCCcccc----
Q 048438            6 LFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAG-SACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC----   80 (239)
Q Consensus         6 ~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~-~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~----   80 (239)
                      +.|+++. .+..|.+.++++|++++|+.|..+++|+.-.+ +.+.-|  .    .+ ++|+++.+ ||-++.|.|.    
T Consensus       198 Aavmi~~-Pnt~G~~ed~~~i~~~~h~~G~l~~~~ad~~al~~l~~P--g----~~-GaDi~~g~-~q~fg~p~g~GGP~  268 (437)
T d1wyua1         198 GAVVVQN-PNFLGALEDLGPFAEAAHGAGALFVAVADPLSLGVLKPP--G----AY-GADIAVGD-GQSLGLPMGFGGPH  268 (437)
T ss_dssp             EEEEEES-SCTTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTBCCH--H----HH-TCSEEEEE-CTTTTCCCGGGCSC
T ss_pred             eEEEEcc-ccccccccchHHHHHHhhhccceEEeeechhhhhccccc--c----cc-ccceEeec-cceeccccCCCcCc
Confidence            4454444 46689999999999999999999888875432 212111  0    11 49999999 7767778665    


Q ss_pred             -eEEEeeCcccccccccCC-CCccCC-C--CceecC-----------CCC--C-----ChHHHHHHHHHhCHHHHHHHHH
Q 048438           81 -CCLWATNPEYLKNKATES-KPVVDY-K--DWQITL-----------SRS--F-----RSLKLWFVIRNYGMENLRHFLR  137 (239)
Q Consensus        81 -g~l~~~~~~~l~~~~~~~-~~~~~~-~--~~~~~~-----------~~~--~-----~~~~~~~~l~~~g~~g~~~~~~  137 (239)
                       |++.+++ .+.+...... +...+. +  .+.+..           ++.  .     .++..+..+..+|.+|+++..+
T Consensus       269 ~G~~a~~~-~l~r~lPgrivg~s~d~~G~~~~~l~lqtreqhIrRekatsnict~q~l~a~~a~~Y~~~lG~~GL~~ia~  347 (437)
T d1wyua1         269 FGFLATKK-AFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVAL  347 (437)
T ss_dssp             CEEEEECG-GGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccc-hhhccccccccccccccCCcccceeecccccccccccccccchhhHHHHHHHHHHHHhhhcCcccHHHHHH
Confidence             8888764 3333222100 000000 0  011110           111  1     1244455678899999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCeEEEcC-CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEE
Q 048438          138 SHVNMARLFERLVSGDKRFEVVFP-CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMT  216 (239)
Q Consensus       138 ~~~~la~~l~~~l~~~~g~~~~~~-~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~  216 (239)
                      +...+|+|+.++|.+++|++++.+ +..+-+.+..+..                         ...+.++|.+.|...-+
T Consensus       348 ~a~~~A~yl~~~L~~~~g~~~~~~~~~f~ef~v~~~~~-------------------------~~~i~k~L~d~G~~~~~  402 (437)
T d1wyua1         348 KSVEMAHKLHALLLEVPGVRPFTPKPFFNEFALALPKD-------------------------PEAVRRALAERGFHGAT  402 (437)
T ss_dssp             HHHHHHHHHHHHHTTSTTCEECSCSSBCSEEEEECSSC-------------------------HHHHHHHHHHTTCCCCE
T ss_pred             HHHHHHHHHHHHhhhcCCeeccCCCCeeeEEEEECCCC-------------------------HHHHHHHHHhCCCCCCc
Confidence            999999999999999999997754 3344444443221                         11455666666653111


Q ss_pred             E-EEECCEeEEEEEecCCCCCc
Q 048438          217 N-VVLGGIYAIRFATGATLTEE  237 (239)
Q Consensus       217 ~-~~~~g~~~lR~~~~~~~t~~  237 (239)
                      . ..+-+...+.++++-..|.+
T Consensus       403 ~~~~~~~~~~lli~~TE~~tke  424 (437)
T d1wyua1         403 PVPREYGENLALFAATELHEEE  424 (437)
T ss_dssp             ECCTTSCSSEEEEECCTTCCHH
T ss_pred             ccccCCCCCeEEEecCCCCCHH
Confidence            1 11223456778776555544

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.94  E-value=8.4e-10  Score=92.20  Aligned_cols=79  Identities=16%  Similarity=0.122  Sum_probs=56.1

Q ss_pred             EEEEEecCCC-CcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEE
Q 048438            6 LFLCATIGTT-AITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLW   84 (239)
Q Consensus         6 ~~vv~t~gtt-~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~   84 (239)
                      -+|+.+..+| ..+.+.++++|+++||+||+|+++|.+|+.+............  .++|++++|.||.++++ ..|+++
T Consensus       135 k~i~~~~p~n~~~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~~~~~~~~--~~~di~~~S~sK~~~g~-~~G~i~  211 (366)
T d2aeua1         135 LVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALK--LGADLVVTSTDKLMEGP-RGGLLA  211 (366)
T ss_dssp             EEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHH--HTCSEEEEETTSSSSSC-SCEEEE
T ss_pred             eEEEEEecCCCCcCCHHHHHHHHHHhccCcEEEEEecCccccccccccCCCHhh--cCceEEEeccccccccc-ceeEEE
Confidence            4555655544 4667899999999999999999999999866443221111111  13999999999998776 467777


Q ss_pred             eeC
Q 048438           85 ATN   87 (239)
Q Consensus        85 ~~~   87 (239)
                      .++
T Consensus       212 ~~~  214 (366)
T d2aeua1         212 GKK  214 (366)
T ss_dssp             EEH
T ss_pred             ecH
Confidence            643

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

Probab=98.94  E-value=4.2e-09  Score=88.24  Aligned_cols=151  Identities=14%  Similarity=0.208  Sum_probs=107.2

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ceE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCC   82 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~   82 (239)
                      .-+|.+-.-+|.+..+.||++|+++||++|+.++||.+++.+.+.-|    +..   +||.+.-|..|++++...  .|+
T Consensus       145 t~lv~~Esp~NP~l~v~Di~~i~~ia~~~g~~~vvDnT~atP~~~~P----l~~---GaDivihS~TKyi~Ghsd~~~G~  217 (392)
T d1gc0a_         145 TRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRP----LEL---GADLVVHSATKYLSGHGDITAGI  217 (392)
T ss_dssp             EEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTTTHHHHCCG----GGG---TCSEEEEETTTTTTCSSSCCCEE
T ss_pred             CeEEEecccccceeeecchHHHHHHHHhcCCEEEEecCccCccccCh----HHh---CCCEEEEecceeecCCccccccc
Confidence            35677788899999999999999999999999999999987655222    112   499999999999987532  455


Q ss_pred             EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE-cC
Q 048438           83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVV-FP  161 (239)
Q Consensus        83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~-~~  161 (239)
                      +..++ .++.....        ..+.-..|.-..+...|..++  |.+.+..|++++.+++..+.+.|++.|.++-+ .|
T Consensus       218 v~~~~-~~~~~~r~--------~~~~~~~G~~~~p~da~ll~r--gl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yP  286 (392)
T d1gc0a_         218 VVGSQ-ALVDRIRL--------QGLKDMTGAVLSPHDAALLMR--GIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYP  286 (392)
T ss_dssp             EEECH-HHHHHHHH--------THHHHHTCCCCCHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC
T ss_pred             ccchh-HHHHHHHH--------HHHHHccCCcCChhhHHHHHh--ccccHHHHHHHHHHHHHHHHHHHHhCCCccEEeec
Confidence            55533 33322110        000111233445567777766  56788899999999999999999999888743 32


Q ss_pred             -----C-----------CeeEEEEEEcC
Q 048438          162 -----C-----------HFAVVCFRVSP  173 (239)
Q Consensus       162 -----~-----------~~~iv~f~~~~  173 (239)
                           |           ..++++|.+++
T Consensus       287 gl~s~p~~~~~~~~~~~~gg~~sf~l~~  314 (392)
T d1gc0a_         287 GLASFPQYTLARQQMSQPGGMIAFELKG  314 (392)
T ss_dssp             ----------------CCTTEEEEEETT
T ss_pred             cccCCcccccccccccCCCcEEEEEEeC
Confidence                 1           14688999865

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=98.83  E-value=2.1e-09  Score=92.40  Aligned_cols=141  Identities=14%  Similarity=0.181  Sum_probs=77.5

Q ss_pred             ccChhHHHHHHHHhCCEEEEecccccccccCc-----cccc-----ccC-CCCCcceEEEcCcccCCCcccceEEEeeCc
Q 048438           20 VDPLKPLCDVAKQFGIWVHVDAAYAGSACIFP-----EFRH-----FID-GVEGADSFSLNAHKWFFATLDCCCLWATNP   88 (239)
Q Consensus        20 i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~-----~~~~-----~~~-~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~   88 (239)
                      ++++++|.++|++||+.+|+|+|+..+...+.     .+..     ... -...+|++++++||.+++|.| |+++.+++
T Consensus       194 ~~~l~~i~~~a~~~~~~~~~D~a~~~~~a~~~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K~~~~~~G-G~i~~~~~  272 (456)
T d1c7ga_         194 MANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNIG-GFLCMNDE  272 (456)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCSSC-EEEEESCH
T ss_pred             HHHHHHHHHHHHHcCCEEEEEcchhhcchhhhcccccccCCCChhhhccccccccccEEEeccccccccce-eEEEcCCH
Confidence            45678899999999999999999876543211     1110     000 012489999999999998876 66666554


Q ss_pred             ccccccccCCCCccCCCCceecCCCCC-ChHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcCCCeeE
Q 048438           89 EYLKNKATESKPVVDYKDWQITLSRSF-RSLKLWFVIRN-YGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAV  166 (239)
Q Consensus        89 ~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~-~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~~~~~i  166 (239)
                      .+.......   ..........++... ...++...+.. .+.    +.+++..+.+++|.++|.+. |+.++.++..+.
T Consensus       273 ~l~~~~r~~---~~~~~g~~~~g~~~~~~~~a~a~~l~e~~~~----~~l~~r~~~~~~L~e~L~~~-g~~vv~p~g~~~  344 (456)
T d1c7ga_         273 EMFSAAKEL---VVVYEGMPSYGGLAGRDMEAMAIGLREAMQY----EYIEHRVKQVRYLGDKLREA-GVPIVEPTGGHA  344 (456)
T ss_dssp             HHHHHHHHH---HHHHTCCTTTTTCCHHHHHHHHHHHHHHTCH----HHHHHHHHHHHHHHHHHHHT-TCCBCSSCCSSE
T ss_pred             HHHHHHHHh---ccccCCCcccchhhHHHHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHHhc-cCCcccCCCCcc
Confidence            332221100   000000000011111 11222222332 222    34455567788999999886 777776665555


Q ss_pred             EEE
Q 048438          167 VCF  169 (239)
Q Consensus       167 v~f  169 (239)
                      +..
T Consensus       345 v~v  347 (456)
T d1c7ga_         345 VFL  347 (456)
T ss_dssp             EEE
T ss_pred             eeE
Confidence            543

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=98.73  E-value=2.4e-08  Score=82.85  Aligned_cols=159  Identities=10%  Similarity=-0.077  Sum_probs=87.3

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-ccc
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-LDC   80 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~   80 (239)
                      +.+++.+.-+|.||.+.+   +++|+++|++||+++++|.+++......+........ .....+..+..|..+.| .-+
T Consensus       153 ~~~i~~~~p~NPtG~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~sk~~~~~G~R~  231 (368)
T d1v2da_         153 TRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFA-PERTFTVGSAGKRLEATGYRV  231 (368)
T ss_dssp             EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHC-TTTEEEEEEHHHHTTCGGGCC
T ss_pred             ceEEEEcCCCCcccccCCHHHHHHHHHHHHHcCCeeeechhhhhhccccccccccccc-ccccceeeccccccccccccc
Confidence            445667778999999887   7888999999999999999887544332221111111 11344555666655554 235


Q ss_pred             eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Q 048438           81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGM-ENLRHFLRSHVNMARLFERLVSGDKRFEVV  159 (239)
Q Consensus        81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-~g~~~~~~~~~~la~~l~~~l~~~~g~~~~  159 (239)
                      |.+.. .++.+......    ..  .+.. ............++..... +.+++..+...+..+++.+.|++. |+++.
T Consensus       232 g~~~~-~~~~~~~~~~~----~~--~~~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~  302 (368)
T d1v2da_         232 GWIVG-PKEFMPRLAGM----RQ--WTSF-SAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM-GLRVY  302 (368)
T ss_dssp             EEEEC-CTTTHHHHHHH----HH--HHTS-SCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT-TCCEE
T ss_pred             ccccc-cccccchhhhh----hh--cccc-ccccccccccccccccccchhhHHHHHHHHHHhhhhhhhhHHhc-CcEEe
Confidence            65554 22332221100    00  0000 0000111111222222111 234555555677888899999886 99987


Q ss_pred             cCCCeeEEEEEEcC
Q 048438          160 FPCHFAVVCFRVSP  173 (239)
Q Consensus       160 ~~~~~~iv~f~~~~  173 (239)
                      .+...+.+.+.+++
T Consensus       303 ~p~g~~~~~~~l~~  316 (368)
T d1v2da_         303 VPEGTYFLMAELPG  316 (368)
T ss_dssp             CCSBSSEEEEECTT
T ss_pred             cCCceeEEEEeCCc
Confidence            66656677777764

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=98.73  E-value=3.7e-09  Score=90.90  Aligned_cols=67  Identities=21%  Similarity=0.293  Sum_probs=46.1

Q ss_pred             ccChhHHHHHHHHhCCEEEEecccccccccCcc-----ccc-----ccC-CCCCcceEEEcCcccCCCcccceEEEeeC
Q 048438           20 VDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPE-----FRH-----FID-GVEGADSFSLNAHKWFFATLDCCCLWATN   87 (239)
Q Consensus        20 i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~-----~~~-----~~~-~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~   87 (239)
                      ++++++|.++|++||+++|+|+||..+......     +..     ... -...+|+++++.||.+++|.| |++..++
T Consensus       203 ~~~l~~i~~ia~~~g~~l~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~~~~g-g~i~~~~  280 (467)
T d2v1pa1         203 LANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMG-GLLCMKD  280 (467)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSSC-EEEEECS
T ss_pred             HHHHHHHHHHHHHcCCEEEEechhhhccccccccccccccCCcccccchhhcccCCEEEecCCCCCCCCCc-eeEEecc
Confidence            457889999999999999999999766432211     000     000 012499999999999998865 4555544

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

Probab=98.73  E-value=2.8e-07  Score=77.62  Aligned_cols=160  Identities=16%  Similarity=0.214  Sum_probs=105.9

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ceE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCC   82 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~   82 (239)
                      +-+|.+-.-+|.+..+.||++|+++||++|+.++||.+++...+...   ++.-   +||+++-|..|++++...  .|+
T Consensus       145 t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vvDnT~a~tP~~~~---Pl~~---GaDiVvhS~TKyl~GHsD~l~G~  218 (421)
T d2ctza1         145 TRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLLR---PLAW---GAALVTHSLTKWVGGHGAVIAGA  218 (421)
T ss_dssp             EEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTSCC---GGGG---TCSEEEEETTTTTTCSSCCCCEE
T ss_pred             ceEEEEcCCCcceeEecchHHHHHHHHhcCCceEecccccccceecc---cccc---CCcEEEEechhhccCCCCeEEEE
Confidence            45777888899999999999999999999999999999974323221   1112   499999999999988644  455


Q ss_pred             EEeeCcccccccccC---CCCccCCCC-----------ce--------ecCCCCCChHHHHHHHHHhCHHHHHHHHHHHH
Q 048438           83 LWATNPEYLKNKATE---SKPVVDYKD-----------WQ--------ITLSRSFRSLKLWFVIRNYGMENLRHFLRSHV  140 (239)
Q Consensus        83 l~~~~~~~l~~~~~~---~~~~~~~~~-----------~~--------~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~  140 (239)
                      +..++ .+.......   ......+..           +.        -..|....+...|..++  |.+.+.-|++++.
T Consensus       219 vv~~~-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~sP~~a~l~~r--gl~TL~lRm~~~~  295 (421)
T d2ctza1         219 IVDGG-NFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLL--GMETLSLRAERHV  295 (421)
T ss_dssp             EEECS-CSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHH--HHTTHHHHHHHHH
T ss_pred             EEcCC-cchhhhcccccccCCchhhhhhHHHHHhccHHHHHHHHHHHHHhccCCCCHHHHHHHhc--CCcchhhHHHHHH
Confidence            55432 222111000   000000000           00        00133344566776666  5677889999999


Q ss_pred             HHHHHHHHHHhCCCCeE-EEcC-----C------------CeeEEEEEEcC
Q 048438          141 NMARLFERLVSGDKRFE-VVFP-----C------------HFAVVCFRVSP  173 (239)
Q Consensus       141 ~la~~l~~~l~~~~g~~-~~~~-----~------------~~~iv~f~~~~  173 (239)
                      +.+..+.+.|++.|.++ |..|     |            ..++++|.+++
T Consensus       296 ~nA~~vA~~L~~hp~V~~V~yPgL~s~p~~~~a~~~~~g~~G~~~sf~l~~  346 (421)
T d2ctza1         296 ENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLKG  346 (421)
T ss_dssp             HHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHHTTCCCSEEEEEETT
T ss_pred             HHHHHHHhhhccCCCeeEEecCCcCCCccHHHHHHhcCCCCceEEEEEecC
Confidence            99999999999999985 4444     1            12489999875

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

Probab=98.68  E-value=4.8e-08  Score=81.84  Aligned_cols=194  Identities=12%  Similarity=0.069  Sum_probs=109.3

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCC---CcceEEEcCcccCCCc-
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVE---GADSFSLNAHKWFFAT-   77 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~---~~Ds~~~~~hK~l~~P-   77 (239)
                      +.+++.+.-+|.||.+.+   +++|+++|+++|+++++|.+|+......+..........   .-.++..+++|.++.| 
T Consensus       164 ~~~~~~~~P~NPTG~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G  243 (388)
T d1j32a_         164 TKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTG  243 (388)
T ss_dssp             EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTT
T ss_pred             CeEEEECCCCCCCCcccchhhhhhhhcccccCCeEEEchhhhhcccccCCCCCCHHHhCcccccceeEecCChhhhhcch
Confidence            445667777899999877   677788899999999999999654443222211111100   1246788999997655 


Q ss_pred             ccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHH--HhCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 048438           78 LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIR--NYGMENLRHFLRSHVNMARLFERLVSGDKR  155 (239)
Q Consensus        78 ~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~g~~g~~~~~~~~~~la~~l~~~l~~~~g  155 (239)
                      .=+|.++. .+..+......          ..............++..  ..+.+.+++..++..+..+++.+.|++.+|
T Consensus       244 lRvG~~~~-~~~~~~~~~~~----------~~~~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g  312 (388)
T d1j32a_         244 WRVGFLAG-PVPLVKAATKI----------QGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAMPG  312 (388)
T ss_dssp             TCCEEEEC-CHHHHHHHHHH----------HHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             hHeEEEEE-CHHHHHHHHHh----------hhhccccccHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            23677664 33333222100          000000111122222211  124456677777788888899999999888


Q ss_pred             eEEEcCCCee-EEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHh-cCcEEEEEEEECCEeEEEEEecC
Q 048438          156 FEVVFPCHFA-VVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINA-SGKAYMTNVVLGGIYAIRFATGA  232 (239)
Q Consensus       156 ~~~~~~~~~~-iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~~g~~~lR~~~~~  232 (239)
                      +++.. |+.+ .+...++....               +       ...+.++|.+ .|..+++.....+..++|+++..
T Consensus       313 ~~~~~-p~gg~~l~~~l~~~~~---------------~-------~~~~~~~ll~~~gV~v~pG~~F~~~~~~Rls~~~  368 (388)
T d1j32a_         313 LECPK-PDGAFYMFPSIAKTGR---------------S-------SLDFCSELLDQHQVATVPGAAFGADDCIRLSYAT  368 (388)
T ss_dssp             CBCCC-CCBTTEECCBCGGGTC---------------C-------HHHHHHHHHHHHCEECEEGGGGTCTTBEEEECCS
T ss_pred             CEecC-CCceEEEEEECCCCCC---------------C-------HHHHHHHHHHhCCEEEEeccccCCCCeEEEEEeC
Confidence            88654 4443 34334433211               1       1134445544 45555554555556799999863

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.68  E-value=1.4e-07  Score=78.94  Aligned_cols=150  Identities=18%  Similarity=0.217  Sum_probs=104.4

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHH----HhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc-
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAK----QFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD-   79 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~----~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g-   79 (239)
                      +-+|.+-.-+|.+..+.||++|+++||    ++|+.++||.+++...+.-+    +..   +||.++-|..|++++... 
T Consensus       139 t~lv~~EspsNP~l~v~Di~~ia~~a~~~~~~~g~~lvVDnT~atP~~~~P----l~~---GADiVvhS~TKyi~GhsDv  211 (393)
T d1n8pa_         139 TKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYISNP----LNF---GADIVVHSATKYINGHSDV  211 (393)
T ss_dssp             EEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHCCG----GGG---TCSEEEEETTTTTTCSSCC
T ss_pred             cceeEecCcchhhhhccchhhhhhhhhhhcccCCceEEEecCccCcccCCc----hhh---CCCEEEEccccccCCCCcc
Confidence            446777778899999999999999999    67899999999987655322    112   499999999999988644 


Q ss_pred             -ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC-CCeE
Q 048438           80 -CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD-KRFE  157 (239)
Q Consensus        80 -~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~-~g~~  157 (239)
                       .|++..++..+......          +....|....+...|..++  |.+.+..|++++.+.+..+.+.|++. +.++
T Consensus       212 ~~G~v~~~~~~~~~~l~~----------~~~~~G~~~~p~~a~ll~r--gl~Tl~lR~~~~~~nA~~lA~~L~~~~~~V~  279 (393)
T d1n8pa_         212 VLGVLATNNKPLYERLQF----------LQNAIGAIPSPFDAWLTHR--GLKTLHLRVRQAALSANKIAEFLAADKENVV  279 (393)
T ss_dssp             CCEEEEESCHHHHHHHHH----------HHHHHCCCCCHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHTSCTTTEE
T ss_pred             ccceeeecchhHHHHHHH----------HHhhcCCCCChHHHHHHHh--CCcchhhHHHHHHHHHHHHHHHHHhccCcEE
Confidence             45555444332222110          1111233344566777766  56778899999999999999999765 6666


Q ss_pred             EEc-C-----C-------------CeeEEEEEEcC
Q 048438          158 VVF-P-----C-------------HFAVVCFRVSP  173 (239)
Q Consensus       158 ~~~-~-----~-------------~~~iv~f~~~~  173 (239)
                      -+. |     +             ..++++|.+++
T Consensus       280 ~V~yP~l~~~~~~~~a~~~~~~~~~G~~~sf~l~~  314 (393)
T d1n8pa_         280 AVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKG  314 (393)
T ss_dssp             EEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESS
T ss_pred             EEecccccccccchhhhhccccCCCCceEEEEEeC
Confidence            443 2     1             13499999975

>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase)
species: Amycolatopsis mediterranei [TaxId: 33910]

Probab=98.66  E-value=4.1e-07  Score=75.97  Aligned_cols=143  Identities=13%  Similarity=0.066  Sum_probs=86.9

Q ss_pred             cCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEEeeCcccc
Q 048438           12 IGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWATNPEYL   91 (239)
Q Consensus        12 ~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~l   91 (239)
                      ..++..|...++.+|.++|++++++++.|+||+.|+..-...   .-....+.+++++++|.+.+.. .|++++.++++.
T Consensus       127 ~~~~~~g~~~d~~~i~~~~~~~~i~lieD~a~a~ga~~~g~~---~g~~g~~~~~Sf~~~K~i~~g~-GG~i~t~~~~~~  202 (384)
T d1b9ha_         127 MPVHMAGLMADMDALAKISADTGVPLLQDAAHAHGARWQGKR---VGELDSIATFSFQNGKLMTAGE-GGAVVFPDGETE  202 (384)
T ss_dssp             CCBCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEE---GGGSSSCEEEECCTTSSSCSSS-CEEEEECTTCHH
T ss_pred             ccccccccccccccchhhhhhhhhhhhhhhceecccccCCEe---cCcccccceecccccccccccc-cchhhhhhHHHH
Confidence            456788999999999999999999999999999876532211   1112247778899999987654 466666554332


Q ss_pred             ccc---ccC-CCCccCCCCc-eecCCC--CCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc
Q 048438           92 KNK---ATE-SKPVVDYKDW-QITLSR--SFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF  160 (239)
Q Consensus        92 ~~~---~~~-~~~~~~~~~~-~~~~~~--~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~  160 (239)
                      ...   ... .....+...+ ....|.  |...+.....+..  .+.+.+++++..++++++.+.|++++++....
T Consensus       203 ~~~~~~~~~g~~~~~~~~~~~~~~~G~n~rms~l~Aaig~~q--L~~ld~~~~~R~~~~~~y~~~L~~~~~i~~~~  276 (384)
T d1b9ha_         203 KYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQ--LARLDEQIAVRDERWTLLSRLLGAIDGVVPQG  276 (384)
T ss_dssp             HHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHHHHHTSTTCEECC
T ss_pred             HHHHHHHhcCCCCccccccccccccccccccccchhhhhhhh--hhhcccchhhhhhhhhhhhhhhhccccccccc
Confidence            111   000 0000000001 011122  2333333333333  34567778888899999999999988876543

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.66  E-value=3.6e-08  Score=81.87  Aligned_cols=142  Identities=15%  Similarity=0.110  Sum_probs=83.7

Q ss_pred             CCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEEeeCcccccc
Q 048438           14 TTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWATNPEYLKN   93 (239)
Q Consensus        14 tt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~l~~   93 (239)
                      ++..|...|+++|.++|+++|++++.|+||+.|...-..    ..+-.+...+++.++|++.++.| |++++.+..+...
T Consensus       126 ~h~~G~~~~~~~i~~i~~~~~i~vIeD~a~a~g~~~~~~----~~g~~g~~~~Sf~~~K~l~~g~G-G~i~t~~~~l~~~  200 (376)
T d1mdoa_         126 VHYAGAPADLDAIYALGERYGIPVIEDAAHATGTSYKGR----HIGARGTAIFSFHAIKNITCAEG-GIVVTDNPQFADK  200 (376)
T ss_dssp             BCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTE----ETTSSSEEEEECCTTSSSCSSSC-EEEEESCHHHHHH
T ss_pred             eCCCCCccchhHHHHHHHhcCceEEeccchhccCeeCCe----ecccccCccccCCCcCCCCCCCC-CEEEEechhHHHH
Confidence            357899999999999999999999999999988653221    11212366778889999976554 6677655433211


Q ss_pred             cc---c---CCCCc---cC--CCCcee-cCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc
Q 048438           94 KA---T---ESKPV---VD--YKDWQI-TLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF  160 (239)
Q Consensus        94 ~~---~---~~~~~---~~--~~~~~~-~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~  160 (239)
                      ..   .   .....   ..  ...+.. ..+..+..-.+-+++.....+.+.+++++..++++++.+.|++++...+..
T Consensus       201 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aai~~~qL~~~~~~~~~r~~~~~~~~~~L~~~~~~~~~~  279 (376)
T d1mdoa_         201 LRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKLDALNARRAAIAAQYHQAMADLPFQPLSL  279 (376)
T ss_dssp             HHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTSSCEECCC
T ss_pred             HHhhcccCCcccccccccccccccccchhcccccccchhhhhhhhhhhhhhhHHHHHHhhhhhhhhhhccccccccccc
Confidence            10   0   00000   00  000111 112222221222222222234567778888899999999999986665443

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

Probab=98.65  E-value=3.7e-07  Score=76.27  Aligned_cols=150  Identities=12%  Similarity=0.123  Sum_probs=106.6

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHh--CCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--c
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQF--GIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--C   80 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~--gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~   80 (239)
                      +-+|.+-.-+|.+..+.||++|+++|+++  |+.++||.+++.+.+.-+     ++ . +||.++.|..|++++-..  .
T Consensus       144 t~~i~~EtpsNP~l~v~Di~~i~~~a~~~~~g~~~vVDnT~atP~~~~P-----l~-~-GaDivvhS~TKy~~Ghsdvlg  216 (391)
T d1cl1a_         144 TKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKA-----LD-F-GIDVSIQAATKYLVGHSDAMI  216 (391)
T ss_dssp             EEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSSCG-----GG-G-TCSEEEEETTTTTTCSSSCCC
T ss_pred             cceeeecccCcccccccccHHHHHHHHhccCCcEEEEeccccchhhhcc-----cc-c-ccceEEeecchhccccccccc
Confidence            45677778889999999999999999875  999999999987655322     21 1 499999999999988654  4


Q ss_pred             eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc
Q 048438           81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF  160 (239)
Q Consensus        81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~  160 (239)
                      |++. .++........          +....+....+...|..++  |.+.+.-|++++.+.|..+.+.|++.|.++-+.
T Consensus       217 G~vv-~~~~~~~~~~~----------~~~~~G~~~~p~~a~ll~r--gl~TL~lR~~~~~~nA~~vA~~L~~hp~V~~V~  283 (391)
T d1cl1a_         217 GTAV-CNARCWEQLRE----------NAYLMGQMVDADTAYITSR--GLRTLGVRLRQHHESSLKVAEWLAEHPQVARVN  283 (391)
T ss_dssp             EEEE-ECTTTHHHHHH----------HHHHTTCCCCHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEE
T ss_pred             ccee-ccccccccchh----------hhhcccccCCchhhhhhhc--cchhHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence            4444 34333222110          0111233345566776666  567788999999999999999999999987554


Q ss_pred             CC-----------------CeeEEEEEEcCC
Q 048438          161 PC-----------------HFAVVCFRVSPL  174 (239)
Q Consensus       161 ~~-----------------~~~iv~f~~~~~  174 (239)
                      .|                 ..++++|.+...
T Consensus       284 yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~  314 (391)
T d1cl1a_         284 HPALPGSKGHEFWKRDFTGSSGLFSFVLKKK  314 (391)
T ss_dssp             CTTSTTSTTHHHHHHHCSCCCSEEEEEESSC
T ss_pred             cccccchhhHHHHhhccCCCCcceeeeecCC
Confidence            22                 136899999864

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=98.65  E-value=4.7e-08  Score=82.94  Aligned_cols=203  Identities=13%  Similarity=0.033  Sum_probs=106.3

Q ss_pred             CccEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccc---cC------CCCCcceEEEcC
Q 048438            3 LIPLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF---ID------GVEGADSFSLNA   70 (239)
Q Consensus         3 ~~p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~---~~------~~~~~Ds~~~~~   70 (239)
                      ..+.+|+++.-+|.||.+-+   +++|+++|++||+++++|.+|+.....-+.+...   ..      ....--.+..++
T Consensus       187 ~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~~s~  266 (428)
T d1iaya_         187 IKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSL  266 (428)
T ss_dssp             CCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEES
T ss_pred             CCceEEEEccCCCcccccccccccchhheeeccCcEEEEecccccccccCcccccccccccchhhccccccceEEEEecC
Confidence            34567778888999999777   6889999999999999999997543322111100   00      000123578899


Q ss_pred             cccCCCc-ccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHH--HHhCHHHHHHHHHHHHHHHHHHH
Q 048438           71 HKWFFAT-LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVI--RNYGMENLRHFLRSHVNMARLFE  147 (239)
Q Consensus        71 hK~l~~P-~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~g~~g~~~~~~~~~~la~~l~  147 (239)
                      .|.++.| .-+|.++..++..........    .   +.  .........+.+.+  ...-.+-+++..++..+..+.+.
T Consensus       267 SK~~~~~GlRiG~~~~~~~~l~~~~~~~~----~---~~--~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~l~~r~~~~~  337 (428)
T d1iaya_         267 SKDMGLPGFRVGIIYSFNDDVVNCARKMS----S---FG--LVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFT  337 (428)
T ss_dssp             TTTSSCGGGCEEEEEESCHHHHHHHHHHH----T---TS--CCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcccCCCcccccccccccchhhhhhhhh----c---cc--ccccccccchhhhhhhhccccccccccccccchhHHHHH
Confidence            9987655 347777664433322111000    0   00  00000000111111  11111233444555566677888


Q ss_pred             HHHhCCCCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEE-EE--ECCEe
Q 048438          148 RLVSGDKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTN-VV--LGGIY  224 (239)
Q Consensus       148 ~~l~~~~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~-~~--~~g~~  224 (239)
                      +.|+. +|+++..+.....+.+.++.....             ...    .-...+.++|.++..+++.+ ..  ..+..
T Consensus       338 ~~L~~-~gi~~~~p~gg~f~w~~l~~~~~~-------------~~~----~~~~~l~~~Ll~~~gV~v~PG~~F~~~~~g  399 (428)
T d1iaya_         338 NGLEV-VGIKCLKNNAGLFCWMDLRPLLRE-------------STF----DSEMSLWRVIINDVKLNVSPGSSFECQEPG  399 (428)
T ss_dssp             HHHHH-TTCCBCCCSSSSEEEEECGGGCSS-------------SSH----HHHHHHHHHHHHTSCEECEEGGGGTCSSSS
T ss_pred             HHHHh-CCCEEecCCcceEEEEECcccccc-------------CCC----CCHHHHHHHHHHhCCEEEEcchhcCCCCCC
Confidence            88876 588876443333455666532100             011    11225566666554554443 32  34567


Q ss_pred             EEEEEecC
Q 048438          225 AIRFATGA  232 (239)
Q Consensus       225 ~lR~~~~~  232 (239)
                      ++|+++..
T Consensus       400 ~~Ris~a~  407 (428)
T d1iaya_         400 WFRVCFAN  407 (428)
T ss_dssp             EEEEECSS
T ss_pred             EEEEEeCC
Confidence            99999753

>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL2 [TaxId: 5722]

Probab=98.65  E-value=1.6e-07  Score=76.98  Aligned_cols=152  Identities=16%  Similarity=0.196  Sum_probs=105.9

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHH-HHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--c
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVA-KQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--C   80 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~-~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~   80 (239)
                      .+.+|.+-.-+|.+..+.|++++++++ |++|+.++||-+++.+.+.-+    +..   +||+++-|..|++.+-..  .
T Consensus        83 ~t~~i~~Es~~np~~~v~d~~~~~~~~a~~~~~~~vVDnT~atp~~~~p----l~~---GaDiVv~S~TKy~~Gh~d~~~  155 (331)
T d1pffa_          83 NTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNP----LDL---GVDIVVHSATKYINGHTDVVA  155 (331)
T ss_dssp             TEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCCG----GGG---TCSEEEEETTTTTSSSSSCCC
T ss_pred             ccceeeeecccccccccccchhhhhhhhcccCceEEeeccccccccccc----ccc---CCCEEEecchhhcCCCCcccc
Confidence            345777788889999999999999985 678999999999987654322    112   499999999999987533  3


Q ss_pred             eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE-EE
Q 048438           81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE-VV  159 (239)
Q Consensus        81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~-~~  159 (239)
                      |++..+ ++........        .+....|....+...|..++  |.+.+..|++++.+++..+.+.|++.|.++ |.
T Consensus       156 G~v~~~-~~~~~~~~~~--------~~~~~~G~~l~p~~a~ll~r--gl~Tl~~Rm~~~~~nA~~lA~~L~~hp~V~~V~  224 (331)
T d1pffa_         156 GLVCSR-ADIIAKVKSQ--------GIKDITGAIISPHDAWLITR--GTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVY  224 (331)
T ss_dssp             EEEEEC-HHHHHHHHHT--------CCCCCCCCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCEE
T ss_pred             cccccc-ccchhhhhhh--------hhhhccCCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhhCCcEEeec
Confidence            555553 2222111100        00111233445667777766  567889999999999999999999998884 44


Q ss_pred             cC-----C-----------CeeEEEEEEcC
Q 048438          160 FP-----C-----------HFAVVCFRVSP  173 (239)
Q Consensus       160 ~~-----~-----------~~~iv~f~~~~  173 (239)
                      .|     |           ..++++|.+++
T Consensus       225 yPgl~s~p~~~~~~~~~~~~g~l~sf~l~~  254 (331)
T d1pffa_         225 YPGLPDHPGHEIAKKQMKMFGSMIAFDVDG  254 (331)
T ss_dssp             CTTSTTSTTHHHHHHHCSSCCSEEEEECSS
T ss_pred             cccccCccHHHHHhhcccccCcccceeecc
Confidence            43     1           24689999864

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=98.62  E-value=1.7e-08  Score=86.61  Aligned_cols=143  Identities=15%  Similarity=0.174  Sum_probs=75.5

Q ss_pred             cChhHHHHHHHHhCCEEEEecccccccccCcccc-------------cccCCCCCcceEEEcCcccCCCcccceEEEeeC
Q 048438           21 DPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFR-------------HFIDGVEGADSFSLNAHKWFFATLDCCCLWATN   87 (239)
Q Consensus        21 ~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~-------------~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~   87 (239)
                      +++++|.++|++||+++|+|+||..+.......+             ....  ..+|+++++.||.+++|.+ |+++.++
T Consensus       203 ~~l~~i~~~~~~~g~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~d~~s~s~~k~~~~~~~-g~l~~~~  279 (465)
T d1ax4a_         203 SNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMY--KYADALTMSAKKDPLLNIG-GLVAIRD  279 (465)
T ss_dssp             HHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHG--GGCSEEEEETTSTTCCSSC-EEEEESS
T ss_pred             HHHHHHHHHHHHcCCEEEEECcchhhhhcccccccccccccchhhhccccc--cccceeEeecccCcccccc-eeEeecc
Confidence            4578999999999999999999876543211000             0011  1379999999999887765 7777754


Q ss_pred             cccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcCCCeeEE
Q 048438           88 PEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVV  167 (239)
Q Consensus        88 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~~~~~iv  167 (239)
                      ...+......  ............+  ..+..+......+.....++..++..+.++++.+.|++. ++.++.++..+.+
T Consensus       280 ~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~l~~~L~~~-g~~~v~~~~~~~~  354 (465)
T d1ax4a_         280 NEEIFTLARQ--RCVPMEGFVTYGG--LAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREA-GIPIQYPTGGHAV  354 (465)
T ss_dssp             CHHHHHHHHH--HHHHHTCSTTTTT--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT-TCCBCSSCCSSEE
T ss_pred             hHHHHHhhhc--cccccccCCCcch--hhHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHhh-cCccccCCCccee
Confidence            3211111000  0000000000000  111111111111111111334455567788999999886 7777766666555


Q ss_pred             EEEE
Q 048438          168 CFRV  171 (239)
Q Consensus       168 ~f~~  171 (239)
                      .+..
T Consensus       355 ~~~~  358 (465)
T d1ax4a_         355 FVDC  358 (465)
T ss_dssp             EEES
T ss_pred             eeeh
Confidence            5443

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

Probab=98.60  E-value=4.1e-07  Score=75.04  Aligned_cols=85  Identities=13%  Similarity=-0.002  Sum_probs=54.8

Q ss_pred             CccEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-c
Q 048438            3 LIPLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-L   78 (239)
Q Consensus         3 ~~p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~   78 (239)
                      ..+-+|+.+.-+|.||.+-+   +++|+++|+++|+++++|.+|......-............-..+..++.|.++.| .
T Consensus       132 ~~~~~i~l~~p~NPTG~~~s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~v~~~s~SK~~~~~g~  211 (361)
T d1d2fa_         132 PECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWALLTSGSKSFNIPAL  211 (361)
T ss_dssp             TTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEEEECSHHHHTCGGG
T ss_pred             CCceeEEecccccccccccchhhhhhhhhhhhhhheeeeecccccccccccccccccccccccccccccccccccccccc
Confidence            34557777888999999777   6788999999999999999987543321111111111111335677888866544 3


Q ss_pred             cceEEEeeC
Q 048438           79 DCCCLWATN   87 (239)
Q Consensus        79 g~g~l~~~~   87 (239)
                      .+|++++..
T Consensus       212 R~g~~~~~~  220 (361)
T d1d2fa_         212 TGAYGIIEN  220 (361)
T ss_dssp             CCEEEEECS
T ss_pred             cceeeecch
Confidence            567776644

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

Probab=98.57  E-value=7.7e-07  Score=74.00  Aligned_cols=193  Identities=15%  Similarity=0.070  Sum_probs=104.2

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-ccc
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-LDC   80 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~   80 (239)
                      +.+++.+.-+|.||.+.+   +++|+++|++||++++.|.+|+-.......... ......--++..++.|.++.| .-+
T Consensus       165 ~~~i~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~-~~~~~~~~i~~~s~SK~~~~~GlR~  243 (382)
T d1b5pa_         165 TKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSP-GRVAPEHTLTVNGAAKAFAMTGWRI  243 (382)
T ss_dssp             EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCG-GGTCTTTEEEEEESTTTTTCGGGCC
T ss_pred             CeEEEECCCCCCcchhCCHHHHHHHHHHHHHcCeEEEEEccccceecCCCCCCH-HHcCCCCEEEEecchhhccCcHhhe
Confidence            345566667899999866   677888999999999999999754332221111 111112346677999998655 447


Q ss_pred             eEEEeeCcccccccccCCCCccCCCCceecCCCCCChH---HHHHHHHH--hCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 048438           81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSL---KLWFVIRN--YGMENLRHFLRSHVNMARLFERLVSGDKR  155 (239)
Q Consensus        81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~--~g~~g~~~~~~~~~~la~~l~~~l~~~~g  155 (239)
                      |+++. .++.+......          ...........   .....+..  ....-++...+...+..+.+.+.+.+. |
T Consensus       244 G~~~~-~~~~i~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g  311 (382)
T d1b5pa_         244 GYACG-PKEVIKAMASV----------SRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL-G  311 (382)
T ss_dssp             EEEEC-CHHHHHHHHHH----------HHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-T
T ss_pred             EEEEE-CHHHHHHHHHH----------HHhcccCcccccccccccccccccchhHHHHHHHHHHHhhhhHHHHHHhhc-C
Confidence            87765 33333222100          00000000011   11111111  011122233333445566667777764 7


Q ss_pred             eEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecC
Q 048438          156 FEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGA  232 (239)
Q Consensus       156 ~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~  232 (239)
                      +++..|.....+.+.+.+...               +       ...+.+.|.++|..+.+.....+..++|+++..
T Consensus       312 ~~~~~p~gg~~~~~~~~~~~~---------------~-------~~~~~~~l~e~gV~v~PG~~F~~~~~iRis~~~  366 (382)
T d1b5pa_         312 LKAVRPSGAFYVLMDTSPIAP---------------D-------EVRAAERLLEAGVAVVPGTDFAAFGHVRLSYAT  366 (382)
T ss_dssp             CCBCCCSBTTEEEEECTTTCS---------------S-------HHHHHHHHHHTTEECEESGGGTCTTEEEEECCS
T ss_pred             CeEecCCceEEEeEeCCCCCC---------------C-------HHHHHHHHHHCCEEEEeCcccCCCCeEEEEEcC
Confidence            776544344456666654321               1       114555667777776666555566789999864

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

Probab=98.54  E-value=1.1e-06  Score=73.33  Aligned_cols=150  Identities=15%  Similarity=0.219  Sum_probs=104.1

Q ss_pred             EEEEEecCCCCcccccChhHHHHHHH-HhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ceE
Q 048438            6 LFLCATIGTTAITAVDPLKPLCDVAK-QFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCC   82 (239)
Q Consensus         6 ~~vv~t~gtt~~G~i~pl~~i~~i~~-~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~   82 (239)
                      -+|.+-.-+|.+..+.|+++++++++ ++|+.++||.+++.+.+.-|    +..   +||.++-|..|++++...  +|+
T Consensus       146 ~lv~~Etp~NP~l~v~Di~~~~~~~~~~~g~~vvvDnT~atP~~~~P----l~~---GaDiVvhS~TKy~~GhsDv~~G~  218 (394)
T d1e5ea_         146 KIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMITNP----VDF---GVDVVVHSATKYINGHTDVVAGL  218 (394)
T ss_dssp             EEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTTCCG----GGG---TCSEEEEETTTTTTCSSCCCCEE
T ss_pred             cEEEEeccCCcceeeehhhhhhhccccccCeEEEecCcccCcccCCc----hhc---CCCEEEechhhhcCCCccccccc
Confidence            46677777899999999999988776 57899999999977655322    112   499999999999987644  455


Q ss_pred             EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE-EEcC
Q 048438           83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE-VVFP  161 (239)
Q Consensus        83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~-~~~~  161 (239)
                      +..+ .+........        .+.-..|....+...|..++  |.+.+.-|++++.+.|..+.+.|++.|.++ |..|
T Consensus       219 v~~~-~~~~~~~~~~--------~~~~~~G~~lsp~~a~ll~r--gl~TL~lRm~r~~~nA~~lA~~L~~hp~V~~V~yP  287 (394)
T d1e5ea_         219 ICGK-ADLLQQIRMV--------GIKDITGSVISPHDAWLITR--GLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYP  287 (394)
T ss_dssp             EEEC-HHHHHHHHHT--------CCCCCCCCCCCHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECT
T ss_pred             ccch-hhHHHHHHHH--------HHHHhhCCCCChHHHHHHHh--hchhHHHHHHHHHHHHHHHHHHHhhcCCccEEeCC
Confidence            5554 3332221100        01111233445667777766  567888999999999999999999999986 4433


Q ss_pred             -----C-----------CeeEEEEEEcC
Q 048438          162 -----C-----------HFAVVCFRVSP  173 (239)
Q Consensus       162 -----~-----------~~~iv~f~~~~  173 (239)
                           +           ..++++|.+.+
T Consensus       288 gl~s~p~~~~~~~~~~~~G~~~sf~~~~  315 (394)
T d1e5ea_         288 GFEDHEGHDIAKKQMRMYGSMITFILKS  315 (394)
T ss_dssp             TCSSSTTHHHHHHHCSSCCSEEEEEETT
T ss_pred             CcccccchhhhhcccccCCCeeeeeccC
Confidence                 1           14688998765

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

Probab=98.53  E-value=7.5e-07  Score=75.38  Aligned_cols=203  Identities=12%  Similarity=0.002  Sum_probs=105.7

Q ss_pred             CCccEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccc---cCCC------C--CcceEE
Q 048438            2 GLIPLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF---IDGV------E--GADSFS   67 (239)
Q Consensus         2 g~~p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~---~~~~------~--~~Ds~~   67 (239)
                      +..+.+++.+.-+|.||.+-+   +++|.++|+++|+++++|.+|+.....-+.+...   ....      .  .--.+.
T Consensus       187 ~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~vi~~  266 (431)
T d1m7ya_         187 NLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVV  266 (431)
T ss_dssp             TCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHTTTTTCSSSSSGGGGEEEE
T ss_pred             cCcceEEEecCccccccccccccccccccccccccCcceeecccccccccCCCCCCCHHHHhhhcccccccccCceEEEE
Confidence            345677888888999999766   7788999999999999999997543322111100   0000      0  011567


Q ss_pred             EcCcccCCCc-ccceEEEeeCcccccccccCCCCccCCCCceecCCCCCCh-HHHHHHHH--HhCHHHHHHHHHHHHHHH
Q 048438           68 LNAHKWFFAT-LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRS-LKLWFVIR--NYGMENLRHFLRSHVNMA  143 (239)
Q Consensus        68 ~~~hK~l~~P-~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~--~~g~~g~~~~~~~~~~la  143 (239)
                      .++.|.++.| .-+|.++..+ +.+......         ........... ..+...+.  ....+-+.+..++..+..
T Consensus       267 ~s~SK~~~~~G~RiG~~~~~~-~~i~~~~~~---------~~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~  336 (431)
T d1m7ya_         267 YSLSKDLGLPGFRVGAIYSND-DMVVAAATK---------MSSFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQ  336 (431)
T ss_dssp             EESSSSSCCGGGCEEEEEESC-HHHHHHHHH---------HGGGSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred             ecCcccccCCCCccceeccch-hhhHHHHHH---------Hhccccccccccchhhhhhccchhhhhhhhhhhhhhhhhh
Confidence            7999998765 3367766533 222211100         00000000001 11111111  111223344445555667


Q ss_pred             HHHHHHHhCCCCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEE-EE--E
Q 048438          144 RLFERLVSGDKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTN-VV--L  220 (239)
Q Consensus       144 ~~l~~~l~~~~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~-~~--~  220 (239)
                      +.+.+.|++ +|+++..+.....+...++....             ....+    -...+.++|.++..+++.+ ..  .
T Consensus       337 ~~l~~~L~~-~gi~~~~p~gg~f~w~~l~~~~~-------------~~~~~----~~~~l~~~ll~~~gV~v~PG~~F~~  398 (431)
T d1m7ya_         337 KKLVSGLQK-SGISCLNGNAGLFCWVDMRHLLR-------------SNTFE----AEMELWKKIVYEVHLNISPGSSCHC  398 (431)
T ss_dssp             HHHHHHHHT-TTCEECCCCSSSEEEEECGGGSS-------------SSSHH----HHHHHHHHHHHTSCEECEEGGGGTC
T ss_pred             hhhhhhhhc-CCcEEecCCceeEEEEECccccc-------------cCccc----CHHHHHHHHHHHCCEEEEeccccCC
Confidence            778888887 59998754333345555543210             01111    1224556665554444443 22  2


Q ss_pred             CCEeEEEEEecC
Q 048438          221 GGIYAIRFATGA  232 (239)
Q Consensus       221 ~g~~~lR~~~~~  232 (239)
                      .+..++|+++..
T Consensus       399 ~~~~~~Ri~~a~  410 (431)
T d1m7ya_         399 TEPGWFRVCFAN  410 (431)
T ss_dssp             SSTTEEEEECSS
T ss_pred             CCCCEEEEEeCc
Confidence            345789999753

>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Spore coat polysaccharide biosynthesis protein C
species: Helicobacter pylori [TaxId: 210]

Probab=98.46  E-value=7.2e-07  Score=73.99  Aligned_cols=147  Identities=10%  Similarity=0.112  Sum_probs=89.2

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEE
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLW   84 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~   84 (239)
                      +-+|+++   +..|...++++|.++|+++|++++-|+||+.|+..-...   .-....+.++++.+.|.+.+. +.|+++
T Consensus       121 t~avi~v---h~~G~~~~~~~i~~~~~~~~i~lIEDaaqa~Ga~~~~~~---~G~~g~~~~~Sf~~~K~l~~g-~GG~i~  193 (371)
T d2fnua1         121 TKAIVSV---DYAGKSVEVESVQKLCKKHSLSFLSDSSHALGSEYQNKK---VGGFALASVFSFHAIKPITTA-EGGAVV  193 (371)
T ss_dssp             EEEEEEE---CGGGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEE---TTSSSSEEEEECCTTSSSCCS-SCEEEE
T ss_pred             hhccccc---cccccccccccccccccccchhhccchhhccCceecccc---CCccccccccccccccccccc-cceEEE
Confidence            3344444   578999999999999999999999999999986533211   111234788889999998764 456666


Q ss_pred             eeCccccccccc--CCCCc-cCCCCce-ecCC--CCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 048438           85 ATNPEYLKNKAT--ESKPV-VDYKDWQ-ITLS--RSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEV  158 (239)
Q Consensus        85 ~~~~~~l~~~~~--~~~~~-~~~~~~~-~~~~--~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~  158 (239)
                      ..+.++......  ..+.. .....+. ...|  -|+.-+....++..  .+.+.+.+++..+++++..+.|++.+++.+
T Consensus       194 t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~G~n~r~sel~Aaigl~q--L~~l~~~~~~R~~~~~~y~~~l~~~~~~~~  271 (371)
T d2fnua1         194 TNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQ--LKKAPFLMQKREEAALTYDRIFKDNPYFTP  271 (371)
T ss_dssp             ESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHHHHTTCSSEEE
T ss_pred             eechhhhhhcccccccccccccccccccccccccccccchhhhhhhhh--hhhccchhhhhhhhhhhhcccccccccccc
Confidence            655433222110  00000 0000000 0111  22333333333333  245667777888999999999999888887


Q ss_pred             Ec
Q 048438          159 VF  160 (239)
Q Consensus       159 ~~  160 (239)
                      ..
T Consensus       272 ~~  273 (371)
T d2fnua1         272 LH  273 (371)
T ss_dssp             SG
T ss_pred             cc
Confidence            64

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

Probab=98.45  E-value=1.2e-06  Score=72.84  Aligned_cols=158  Identities=12%  Similarity=0.017  Sum_probs=89.9

Q ss_pred             ccEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-cc
Q 048438            4 IPLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-LD   79 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g   79 (239)
                      .+.+++++.-+|.||.+.+   +++|.++|++|+++++.|.+++.....-. ..........-..+..++.|.+..| .-
T Consensus       159 ~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~-~~~~~~~~~~~~~v~~s~sK~~~~~GlR  237 (389)
T d2gb3a1         159 RTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGE-FASALSIESDKVVVIDSVSKKFSACGAR  237 (389)
T ss_dssp             TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC-CCCGGGSCCTTEEEEEESTTTTTCGGGC
T ss_pred             CccEEEeCCCCccccccchHHHHHHHHhhcccCCEEEEEeccccccccccc-cccccccccccccccccccccccCcccc
Confidence            3456667778999999766   78889999999999999999865433221 1111111122445666888887776 34


Q ss_pred             ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHH--hCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438           80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRN--YGMENLRHFLRSHVNMARLFERLVSGDKRFE  157 (239)
Q Consensus        80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~  157 (239)
                      +|.++..++.........         .....+  ...+....+...  ...+-+++..++..+..+++.+.|++.++..
T Consensus       238 iG~~~~~~~~i~~~~~~~---------~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~  306 (389)
T d2gb3a1         238 VGCLITRNEELISHAMKL---------AQGRLA--PPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEHGLKR  306 (389)
T ss_dssp             CEEEECSCHHHHHHHHHH---------HHHSCC--CCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             eeeeeccchhHHHHHhhh---------hhcccc--ccccccccccccccccchhcccccccccccchhhhhhhhhhcccc
Confidence            777766443222111100         000000  011111222112  2344556666777788889999999874444


Q ss_pred             EEcCCCeeEEEEEEcC
Q 048438          158 VVFPCHFAVVCFRVSP  173 (239)
Q Consensus       158 ~~~~~~~~iv~f~~~~  173 (239)
                      ...+.....+.++++.
T Consensus       307 ~~~p~~g~~~~~~lp~  322 (389)
T d2gb3a1         307 FTKPSGAFYITAELPV  322 (389)
T ss_dssp             BCCCSBSSEEEEECSS
T ss_pred             ccCCCceEEEEEeCCC
Confidence            3334445566677654

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

Probab=98.44  E-value=8.8e-07  Score=74.05  Aligned_cols=196  Identities=12%  Similarity=0.079  Sum_probs=103.4

Q ss_pred             ccEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCccccc--ccCCCCCcceEEEcCcccCCCcc
Q 048438            4 IPLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRH--FIDGVEGADSFSLNAHKWFFATL   78 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~--~~~~~~~~Ds~~~~~hK~l~~P~   78 (239)
                      .+.+++.+..+|.||.+.+   +++|+++|++|+++++.|.+|+-..........  ..... .--.++.+++|+++.-.
T Consensus       171 ~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~~~~~~~~~-~~~i~~~S~SK~~~~G~  249 (403)
T d1wsta1         171 VKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHFDDY-GRVIYLGTFSKILAPGF  249 (403)
T ss_dssp             CCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGGCSS-SCEEEEEESTTTTCGGG
T ss_pred             ccccccccccCCCCCccCCHHHHHHHHHHHHhcCceeccccchhheecCCCCCCcccccCCC-CcEEEEccccceecCcc
Confidence            4556677778899998766   567888899999999999998743332211111  01111 25577889999986446


Q ss_pred             cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHHhCC--C
Q 048438           79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYG--MENLRHFLRSHVNMARLFERLVSGD--K  154 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g--~~g~~~~~~~~~~la~~l~~~l~~~--~  154 (239)
                      .+|+++. ++..+......       .. ................+...+  ...+++..+...+..+.+.+.|.+.  .
T Consensus       250 RiG~~i~-~~~~i~~~~~~-------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~  320 (403)
T d1wsta1         250 RIGWVAA-HPHLIRKMEIA-------KQ-SIDLCTNTFGQAIAWKYVENGYLDEHIPKIIEFYKPRRDAMLEALEEYMPE  320 (403)
T ss_dssp             CCEEEEE-CHHHHHHHHHH-------HH-HHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred             ccccccc-chHHHHHHHHH-------Hh-hhccccccchhhhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            6777775 33333221100       00 000000100011111111111  1233444444555566666666552  3


Q ss_pred             CeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEE----CCEeEEEEEe
Q 048438          155 RFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVL----GGIYAIRFAT  230 (239)
Q Consensus       155 g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~----~g~~~lR~~~  230 (239)
                      ++....|.....+.+.++....                       ...+.+.|.++|...+.....    .+..++|+++
T Consensus       321 ~~~~~~p~gg~~~~~~~~~~~~-----------------------~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRi~~  377 (403)
T d1wsta1         321 GVEWTKPEGGMFVRVTLPEGID-----------------------TKLMMERAVAKGVAYVPGEAFFVHRDKKNTMRLNF  377 (403)
T ss_dssp             TCEECCCSBSSEEEEECCTTCC-----------------------TTTTHHHHHHTTEECEEGGGGSTTCCCCSEEEEEC
T ss_pred             CeEEeCCCceeEEEEECCCCCC-----------------------HHHHHHHHHHCCEEEEechhhcCCCCCCCEEEEEe
Confidence            5666545445556666654210                       014556677777665543322    2457999997


Q ss_pred             cC
Q 048438          231 GA  232 (239)
Q Consensus       231 ~~  232 (239)
                      ..
T Consensus       378 ~~  379 (403)
T d1wsta1         378 TY  379 (403)
T ss_dssp             SS
T ss_pred             cC
Confidence            54

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.44  E-value=9.2e-07  Score=73.51  Aligned_cols=81  Identities=17%  Similarity=0.042  Sum_probs=54.3

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccc--cCCCCCcceEEEcCcccCCCc-c
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--IDGVEGADSFSLNAHKWFFAT-L   78 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~~~~~~~Ds~~~~~hK~l~~P-~   78 (239)
                      +.+++.+.-+|.||.+.+   +++|+++|++|++++++|.+|+-....-......  ......-..+..++.|.++.| .
T Consensus       160 ~~~i~~~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~Gl  239 (388)
T d1gdea_         160 TRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGW  239 (388)
T ss_dssp             EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGG
T ss_pred             CeEEEECCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccCCCCeEEEEeCChhhccCccc
Confidence            456677777899999865   7778889999999999999997543322111111  111111236778999987655 4


Q ss_pred             cceEEEe
Q 048438           79 DCCCLWA   85 (239)
Q Consensus        79 g~g~l~~   85 (239)
                      -+|.++.
T Consensus       240 R~G~ii~  246 (388)
T d1gdea_         240 RLGFVAA  246 (388)
T ss_dssp             CCEEEEC
T ss_pred             cEEEEEe
Confidence            4777765

>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase subunit 2 (P-protein)
species: Thermus thermophilus [TaxId: 274]

Probab=98.38  E-value=1e-06  Score=75.24  Aligned_cols=146  Identities=17%  Similarity=0.181  Sum_probs=90.1

Q ss_pred             EEecCCCCccccc-ChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-----ccceE
Q 048438            9 CATIGTTAITAVD-PLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-----LDCCC   82 (239)
Q Consensus         9 v~t~gtt~~G~i~-pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-----~g~g~   82 (239)
                      ++....+..|.+. +++++++++|+.+..+++|++-....+......  -.   ++|.++++.|+.++.|     +++|+
T Consensus       206 v~v~~p~~~g~~e~~~~~~~~~~h~~g~~~~~~~~~~~~~~~l~~p~--~~---g~div~vg~~q~~G~P~~~GGP~~G~  280 (471)
T d1wyub1         206 LMLTNPNTLGLFERRILEISRLCKEAGVQLYYDGANLNAIMGWARPG--DM---GFDVVHLNLHKTFTVPHGGGGPGSGP  280 (471)
T ss_dssp             EEECSSCTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTTTTCCHH--HH---TCSEEECCTTTTTCCCCTTSCCCCCC
T ss_pred             eeeccCCCcccccchhhhhHHHHHhccccccccccchhhhhhccccC--cc---cccccccccccccccccccccccccc
Confidence            3444455566655 589999999999999999997544333221111  11   4899999999988877     44666


Q ss_pred             EEeeCcccccccccC-----CCCccCCCCceecCCCC-------CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Q 048438           83 LWATNPEYLKNKATE-----SKPVVDYKDWQITLSRS-------FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLV  150 (239)
Q Consensus        83 l~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l  150 (239)
                      +-+++ .+.+.....     ...............|.       ..++..+..+..+|.+|+++..+.+++.|.|+.++|
T Consensus       281 ~a~~~-~~~R~~PGRiV~~~~~~~~~~~~REqhIrRe~actnqaL~al~A~vYlsllG~~GL~elA~~~~~~A~Yla~~L  359 (471)
T d1wyub1         281 VGVKA-HLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELL  359 (471)
T ss_dssp             EEECG-GGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeehh-hhhccCCCceecCCCccccccCCCcccccchhhhhhhHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHH
Confidence            66643 343332210     00000000000001111       112333445778899999999999999999999999


Q ss_pred             hCCCCeEEEcC
Q 048438          151 SGDKRFEVVFP  161 (239)
Q Consensus       151 ~~~~g~~~~~~  161 (239)
                      +. +|+++..+
T Consensus       360 ~~-~G~~~~~~  369 (471)
T d1wyub1         360 KE-KGYRVPYD  369 (471)
T ss_dssp             HH-TTCBCSSC
T ss_pred             hh-cCceeccC
Confidence            76 79997654

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

Probab=98.37  E-value=1.8e-06  Score=72.60  Aligned_cols=197  Identities=11%  Similarity=0.059  Sum_probs=100.3

Q ss_pred             EEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccc-cCCCCCcceEEEcCcccCCCcccce
Q 048438            6 LFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF-IDGVEGADSFSLNAHKWFFATLDCC   81 (239)
Q Consensus         6 ~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~-~~~~~~~Ds~~~~~hK~l~~P~g~g   81 (239)
                      .+++.+..+|.||.+.+   +++|+++|++|++++++|.++......-+..... ...-...-.+..++.|+++.-.-+|
T Consensus       185 ~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~s~sk~~~~G~RiG  264 (420)
T d1vp4a_         185 FIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLAPGLRIG  264 (420)
T ss_dssp             EEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTCGGGCEE
T ss_pred             eeeEecCCCCccchhhhhhhhhhhhhhhhcccccccccchhhhccccCcccccccccccccceeEEeccccccccccccc
Confidence            34555666789999755   6888999999999999999987543322111110 0011124466778899876445577


Q ss_pred             EEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhC-----HHHHHHHHHHHHHHHHHHHHHHhCCCCe
Q 048438           82 CLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYG-----MENLRHFLRSHVNMARLFERLVSGDKRF  156 (239)
Q Consensus        82 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-----~~g~~~~~~~~~~la~~l~~~l~~~~g~  156 (239)
                      +++. +++.+.......      ..+.. ..-..........+....     .+..+...++...+.+.+.+.+.+++|+
T Consensus       265 ~~~~-~~~~i~~l~~~~------~~~~~-~~~~~~q~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~g~  336 (420)
T d1vp4a_         265 MVAG-SKEFIRKIVQAK------QSADL-CSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGV  336 (420)
T ss_dssp             EEEC-CHHHHHHHHHHH------HHHHS-SCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTC
T ss_pred             cccc-cchhhhhhhhhh------hhccc-cCchhhhhhhhhhcccccccccchhHHHHhhhhcccchhhhhhhhccCCCc
Confidence            7654 334433221000      00000 000011111111122111     1112222333334455566666677899


Q ss_pred             EEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEE----CCEeEEEEEecC
Q 048438          157 EVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVL----GGIYAIRFATGA  232 (239)
Q Consensus       157 ~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~----~g~~~lR~~~~~  232 (239)
                      ++..|.....+.++++.. ..              +    .    .+.+.|.+.|..+++....    .+..++|+++..
T Consensus       337 ~~~~p~gg~f~~~~~~~~-~d--------------~----~----~~~~~l~~~gV~v~PG~~F~~~~~~~~~iRls~~~  393 (420)
T d1vp4a_         337 KWVKSEGGLFIWLTLPEG-FD--------------T----W----EMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCL  393 (420)
T ss_dssp             EECCCSBSSEEEEECCTT-CC--------------T----T----TTHHHHHHHTEECEEGGGGCTTCCCCSEEEEECSS
T ss_pred             EEecCCceEEEEEECCCC-CC--------------H----H----HHHHHHHHCCeEEEechhhCCCCCCCCEEEEEeCc
Confidence            887554444566666542 10              0    1    3445566667665544332    235689999764


Q ss_pred             C
Q 048438          233 T  233 (239)
Q Consensus       233 ~  233 (239)
                      +
T Consensus       394 ~  394 (420)
T d1vp4a_         394 P  394 (420)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.36  E-value=2.2e-06  Score=71.85  Aligned_cols=207  Identities=11%  Similarity=0.023  Sum_probs=108.2

Q ss_pred             ccEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCccccc---ccCCCCC-cc-eEEEcCcccCC
Q 048438            4 IPLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRH---FIDGVEG-AD-SFSLNAHKWFF   75 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~---~~~~~~~-~D-s~~~~~hK~l~   75 (239)
                      .+.+++++..+|.||.+.+   +++|+++|++|++++++|.+|............   .....+. .. .+..++.|.++
T Consensus       174 ~~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~  253 (412)
T d1bw0a_         174 KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLV  253 (412)
T ss_dssp             TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTS
T ss_pred             cccccccccccccccccchhhhccccccccccCCeeeechhhHHHhccCCCCCccccccccccccccccccccccCccCc
Confidence            3456777888899999755   677888889999999999998754332111100   0111111 12 34457899876


Q ss_pred             Cc-ccceEEEeeCcccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC
Q 048438           76 AT-LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD  153 (239)
Q Consensus        76 ~P-~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~  153 (239)
                      .| .-+|.+++.++..........  ....  .....+.. .....+...+.....+-+.+..++..+..+++.+.|.+.
T Consensus       254 ~~G~RvG~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~  329 (412)
T d1bw0a_         254 VPGWRLGWLLYVDPHGNGPSFLEG--LKRV--GMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGEC  329 (412)
T ss_dssp             CGGGCCEEEEEECTTCSCHHHHHH--HHHH--HHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             cCCCCcccccccchhhcchhhhhh--hccc--cccccCCchhhhhhcccccccccccccccccchhHHHHHHHHHHHHHh
Confidence            55 347777764321110000000  0000  00000000 000111112222234556677777888889999999888


Q ss_pred             CCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhc-CcEEEEEEEECCEeEEEEEecC
Q 048438          154 KRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINAS-GKAYMTNVVLGGIYAIRFATGA  232 (239)
Q Consensus       154 ~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~g~~~lR~~~~~  232 (239)
                      +|+++..|....-+..+++.....          +. .+       ..++.++|.++ |.++++.....+..++|+++..
T Consensus       330 ~g~~~~~p~gg~~l~~~~~~~~~~----------~~-~~-------~~~~~~~ll~~~gV~v~PG~~Fg~~g~iRis~~~  391 (412)
T d1bw0a_         330 IGLAPTMPRGAMYLMSRIDLEKYR----------DI-KT-------DVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTTR  391 (412)
T ss_dssp             TTEEECCCCBTTEEEEEECGGGBS----------SC-CS-------HHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCS
T ss_pred             cCceecCCCCceEEEEeCChhhcC----------CC-CC-------HHHHHHHHHHhCCEEEEeccccCCCCeEEEEEcC
Confidence            899876444333444455421100          00 00       11444555444 6555554555556789999754

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=98.33  E-value=7.7e-06  Score=68.53  Aligned_cols=189  Identities=11%  Similarity=-0.009  Sum_probs=97.6

Q ss_pred             cEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-cc
Q 048438            5 PLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-LD   79 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g   79 (239)
                      ..+|++--...+.|.+.|    +++|.++|++||+.+++|.+|.+..-....+.....++. .|.++++  |.+++- ..
T Consensus       187 iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~~~~~e~~gv~-PDivt~g--K~l~gG~~p  263 (404)
T d1z7da1         187 VCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVK-PDVILLG--KALSGGHYP  263 (404)
T ss_dssp             EEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCC-CSEEEEC--GGGGTTSSC
T ss_pred             EEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCcccccccccccCCC-CCEEEEc--ccccCCCCC
Confidence            345665555566788877    999999999999999999999654222222211133554 8988664  777542 33


Q ss_pred             ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHH-HHHHHHHHHHHHHHhCCCCeEE
Q 048438           80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFL-RSHVNMARLFERLVSGDKRFEV  158 (239)
Q Consensus        80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~-~~~~~la~~l~~~l~~~~g~~~  158 (239)
                      +|++..++ +........   .   ...+ ..+.+.........|+.+..+.+.+.+ +....+.+.+.+.+++.+.+.-
T Consensus       264 ~~~v~~~~-~i~~~~~~~---~---~~~T-~~gnpl~~aaa~a~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~  335 (404)
T d1z7da1         264 ISAVLAND-DIMLVIKPG---E---HGST-YGGNPLAASICVEALNVLINEKLCENAEKLGGPFLENLKRELKDSKIVRD  335 (404)
T ss_dssp             CEEEEECH-HHHTTCCTT---C---CCCT-TTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEE
T ss_pred             cccccchH-HHHccCCCC---C---cCcC-CCCCcchhhhhhhhhhhhhcchhhhhhccchhHHHHHHHHHHhcCCCeEE
Confidence            56666643 333222110   0   0001 111222223333445544444333333 3334444555555555543321


Q ss_pred             EcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEec
Q 048438          159 VFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATG  231 (239)
Q Consensus       159 ~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~  231 (239)
                      +. ..-.+..+.+..+..                      .+..+..++.++|.+...   . +...||+++.
T Consensus       336 vr-g~Gl~~~i~~~~~~~----------------------~~~~~~~~l~~~Gl~~~~---~-~~~~ir~~Pp  381 (404)
T d1z7da1         336 VR-GKGLLCAIEFKNELV----------------------NVLDICLKLKENGLITRD---V-HDKTIRLTPP  381 (404)
T ss_dssp             EE-EETTEEEEEECTTTC----------------------CHHHHHHHHHHTTEECCE---E-TTTEEEECCC
T ss_pred             EE-eeCcEEEEEEcCCcc----------------------cHHHHHHHHHhCCeEEec---C-CCCEEEEECC
Confidence            11 112356666654321                      022456677777765432   1 4456898853

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

Probab=98.30  E-value=2.2e-06  Score=71.54  Aligned_cols=198  Identities=12%  Similarity=0.032  Sum_probs=103.1

Q ss_pred             ccEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCccccccc---CCCCCcceEEEcCcccCCCc
Q 048438            4 IPLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFI---DGVEGADSFSLNAHKWFFAT   77 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~---~~~~~~Ds~~~~~hK~l~~P   77 (239)
                      .+.+++++.-+|.||.+.+   +++|+++|+++++++++|.+|.-............   ......-.++.++.|.++.|
T Consensus       164 ~~~~i~l~~P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~  243 (394)
T d1c7na_         164 NNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIA  243 (394)
T ss_dssp             TEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCG
T ss_pred             cceEEEecccccccceeccHHHhhhhhccccccceeEeccccccccccCCccccchhhhhcccccceeeccccccccccc
Confidence            4557778888999999877   56688889999999999999975433221111100   01111345677899987644


Q ss_pred             -ccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHH--HHHHHhCHHHHHHHHHHHHHHHHHHHHHHhC-C
Q 048438           78 -LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLW--FVIRNYGMENLRHFLRSHVNMARLFERLVSG-D  153 (239)
Q Consensus        78 -~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~-~  153 (239)
                       ..+|.+++.++.........         .....+.........  ........+..++..+...+..+.+.+.++. .
T Consensus       244 G~R~g~~~~~~~~i~~~~~~~---------~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  314 (394)
T d1c7na_         244 GMGMSNIIIKNPDIRERFTKS---------RDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNH  314 (394)
T ss_dssp             GGCCEEEECCCHHHHHHHHHH---------HHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ccccccccccChhhhhhhhhh---------hhhccccccccccchhhhhhhcchhhhhcccccccchhhhhhhhhhhccc
Confidence             44566666443322211100         000000111111111  1112223444455555555556666666653 3


Q ss_pred             CCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhc-CcEEEEEEEE--CCEeEEEEEe
Q 048438          154 KRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINAS-GKAYMTNVVL--GGIYAIRFAT  230 (239)
Q Consensus       154 ~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~--~g~~~lR~~~  230 (239)
                      +++++..+.....+.++++..+.               +       ...+.++|.++ |...++....  .+..++|+++
T Consensus       315 ~~~~~~~p~g~~~~~~~~~~~~~---------------~-------~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~  372 (394)
T d1c7na_         315 PEIKAPLIEGTYLQWIDFRALKM---------------D-------HKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINL  372 (394)
T ss_dssp             TTSBCCCCSBSSEEEEECGGGCC---------------C-------HHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEEC
T ss_pred             cceeecCCCceeEEEEECCCCCC---------------C-------HHHHHHHHHHhCCEEEEcchhhCCCCCCEEEEEE
Confidence            56654433334456666654221               1       12455666555 5554443333  3457899997


Q ss_pred             cC
Q 048438          231 GA  232 (239)
Q Consensus       231 ~~  232 (239)
                      ..
T Consensus       373 ~~  374 (394)
T d1c7na_         373 AA  374 (394)
T ss_dssp             CS
T ss_pred             eC
Confidence            64

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=6.3e-06  Score=69.08  Aligned_cols=187  Identities=10%  Similarity=-0.009  Sum_probs=98.9

Q ss_pred             EEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-ccc
Q 048438            6 LFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-LDC   80 (239)
Q Consensus         6 ~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~   80 (239)
                      .+|++--...+.|.+-|    +++|.++|++||+.+++|..+.+..-...-+.....++. .|.+++  -|.+++- ...
T Consensus       190 AaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~a~~~~gv~-PDi~~~--gK~l~gG~~p~  266 (404)
T d2byla1         190 AAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVR-PDIVLL--GKALSGGLYPV  266 (404)
T ss_dssp             EEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCC-CSEEEE--CGGGGTTSSCC
T ss_pred             EEEEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeeccccccccccccchhhhcCCC-CCEEEE--CchhhCCCccc
Confidence            34554444455676666    899999999999999999998754232222221234554 798865  5776653 345


Q ss_pred             eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc
Q 048438           81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF  160 (239)
Q Consensus        81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~  160 (239)
                      |.+++++ +........   .   . .+-..+.+.......+.|+.+..+.   ..++..++.+++.+.|.++.. +.+.
T Consensus       267 ~av~~~~-~i~~~~~~~---~---~-~~T~~gnpl~~aaa~a~L~~i~~~~---l~~~~~~~g~~l~~~l~~l~~-~~i~  334 (404)
T d2byla1         267 SAVLCDD-DIMLTIKPG---E---H-FSTYGGNPLGCRVAIAALEVLEEEN---LAENADKLGIILRNELMKLPS-DVVT  334 (404)
T ss_dssp             EEEEECH-HHHTTSCTT---S---S-CCSSTTCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTSCT-TTEE
T ss_pred             eeeeech-hhhhccCCC---C---C-CcCCCcCHHHHHHHHHHHHHHHhcC---chhhhhHhhHHHHHHHHhhcc-ccce
Confidence            6677643 332222110   0   0 0101122222333334455554443   444555788889998887522 1111


Q ss_pred             CC-Ce-eEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecC
Q 048438          161 PC-HF-AVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGA  232 (239)
Q Consensus       161 ~~-~~-~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~  232 (239)
                      +. .. .+..+.+.....                     .....+.++|.++|.+....    +...+|+++.-
T Consensus       335 ~vRg~Gl~~~i~~~~~~~---------------------~~~~~~~~~l~~~Gvl~~~~----~~~~i~l~PpL  383 (404)
T d2byla1         335 AVRGKGLLNAIVIKETKD---------------------WDAWKVCLRLRDNGLLAKPT----HGDIIRFAPPL  383 (404)
T ss_dssp             EEEEETTEEEEEECCCSS---------------------CCHHHHHHHHHHTTEECEEE----ETTEEEECCCT
T ss_pred             eeeecccEEEEEEecCCc---------------------hhHHHHHHHHHhCCeEEecC----CCCEEEEECCc
Confidence            11 11 245555544221                     11225666787888765431    23468887543

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

Probab=98.22  E-value=4.3e-06  Score=69.04  Aligned_cols=189  Identities=10%  Similarity=0.033  Sum_probs=100.5

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCccccc--ccCCCCCcceEEEcCcccCCCc-c
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRH--FIDGVEGADSFSLNAHKWFFAT-L   78 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~--~~~~~~~~Ds~~~~~hK~l~~P-~   78 (239)
                      +.+++.+.-+|.||.+.+   +++|+++|++|+++++.|.++............  .....+ -=++..++.|.++.| .
T Consensus       162 ~~~~~l~nP~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~-~~i~~~S~SK~~~l~G~  240 (375)
T d1o4sa_         162 TKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFD-RIVYINGFSKSHSMTGW  240 (375)
T ss_dssp             EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSST-TEEEEEESTTTTTCGGG
T ss_pred             ccEEEEeCCCCCccCCCCHHHHHHHHHhHHHcCCceehHhhhccccccccccccccccCCCC-CEEEEeechhhccCCcc
Confidence            446667777999999765   667888899999999999988654332211110  111112 336778999987644 4


Q ss_pred             cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 048438           79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEV  158 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~  158 (239)
                      -+|.++.. +..+......          ...................+ ........+...+..+.+.+.|++. |+++
T Consensus       241 R~G~~~~~-~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~l~~~-g~~~  307 (375)
T d1o4sa_         241 RVGYLISS-EKVATAVSKI----------QSHTTSCINTVAQYAALKAL-EVDNSYMVQTFKERKNFVVERLKKM-GVKF  307 (375)
T ss_dssp             CCEEEECC-HHHHHHHHHH----------HHHHTCSCCHHHHHHHHHHT-TCCCHHHHHHHHHHHHHHHHHHHHT-TCCC
T ss_pred             cccccccc-ccchhhhhhh----------hccccccccccchhhhhhhc-ccchhhhHHHHHHHHHHHHHHHHhc-CceE
Confidence            46766653 2222211100          00000001111112222211 1112233344456667778888775 8887


Q ss_pred             EcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHH-HhcCcEEEEEEEECCEeEEEEEecC
Q 048438          159 VFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESI-NASGKAYMTNVVLGGIYAIRFATGA  232 (239)
Q Consensus       159 ~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~g~~~~~~~~~~g~~~lR~~~~~  232 (239)
                      ..|.....+.+.++..+                     .    ++.++| .+.|...++........++|+++..
T Consensus       308 ~~p~gg~f~~~~~~~~~---------------------~----~~~~~ll~~~gV~v~pG~~F~~~g~iRis~~~  357 (375)
T d1o4sa_         308 VEPEGAFYLFFKVRGDD---------------------V----KFCERLLEEKKVALVPGSAFLKPGFVRLSFAT  357 (375)
T ss_dssp             CCCSBSSEEEEECSSCH---------------------H----HHHHHHHHHHCEECEEGGGGTCTTEEEEECCS
T ss_pred             ecCCccEEEEEECCCCH---------------------H----HHHHHHHHhCCEEEEEccccCCCCeEEEEEcC
Confidence            54433445666665421                     1    333443 3456666655544445689999764

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=98.19  E-value=2.2e-05  Score=66.04  Aligned_cols=199  Identities=11%  Similarity=0.034  Sum_probs=102.3

Q ss_pred             cEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438            5 PLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC   80 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~   80 (239)
                      +.+|++--...+.|.+.|    +++|.++|++||+.+++|..+.+..-....+.....++. .|.+++  -|.+++-+..
T Consensus       199 vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~~~a~~~~gv~-PDi~~~--gK~l~gG~P~  275 (425)
T d1sffa_         199 IAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVA-PDLTTF--AKSIAGGFPL  275 (425)
T ss_dssp             EEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSC-CSEEEE--CGGGGTSSCC
T ss_pred             eEEEEecCccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcchhhHHHhcCCC-ccceec--ccccCCCcce
Confidence            345555544455676554    789999999999999999998863222221211133554 898885  4777665567


Q ss_pred             eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH----hCCCCe
Q 048438           81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLV----SGDKRF  156 (239)
Q Consensus        81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l----~~~~g~  156 (239)
                      |+++++++ ........   .   ...++ .+.+........+|+.+..+.+   .++..++.+++.+.|    ++.+-+
T Consensus       276 ~av~~~~~-i~~~~~~~---~---~~~T~-~gnpl~~aaa~a~L~~i~~~~~---~~~~~~~g~~l~~~l~~~~~~~~~v  344 (425)
T d1sffa_         276 AGVTGRAE-VMDAVAPG---G---LGGTY-AGNPIACVAALEVLKVFEQENL---LQKANDLGQKLKDGLLAIAEKHPEI  344 (425)
T ss_dssp             EEEEEEHH-HHTTSCTT---S---BCCSS-SSCHHHHHHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHHHHHTCTTE
T ss_pred             EEEEEcHH-HHHhhCCC---C---CCCCC-CcCHHHHHHHHHHHHHHHHhhh---hhhhhhhhhhhhhhhhhhHhhCCce
Confidence            87877643 22222110   0   00111 1112222333344555544333   334445666666555    343332


Q ss_pred             EEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCC
Q 048438          157 EVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLT  235 (239)
Q Consensus       157 ~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t  235 (239)
                      .-+. ..-.+..+.+......           ...+    .++...+.+++.++|.++.+. . .....+|+++.--.|
T Consensus       345 ~~vr-g~Gl~~~i~f~~~~~~-----------~~~~----~~~~~~~~~~l~~~Gvl~~~~-g-~~~n~i~~~PpL~it  405 (425)
T d1sffa_         345 GDVR-GLGAMIAIELFEDGDH-----------NKPD----AKLTAEIVARARDKGLILLSC-G-PYYNVLRILVPLTIE  405 (425)
T ss_dssp             EEEE-EETTEEEEEEBGGGCT-----------TSBC----HHHHHHHHHHHHHTTEECEEE-S-TTSCEEEECCCTTCC
T ss_pred             EEEE-ccccEEEEEEeccCcc-----------CCcc----HHHHHHHHHHHHHCCCEEecc-C-CCCCEEEEECCCCCC
Confidence            2111 1122555655432100           0011    245557788888888765532 1 124578988644333

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.17  E-value=5.4e-06  Score=69.11  Aligned_cols=161  Identities=12%  Similarity=0.080  Sum_probs=86.7

Q ss_pred             cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCccccc-ccCCCCCcc-eEEEcCcccCCCc-c
Q 048438            5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRH-FIDGVEGAD-SFSLNAHKWFFAT-L   78 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~-~~~~~~~~D-s~~~~~hK~l~~P-~   78 (239)
                      +-+|+.+.-+|.||.+.+   +++|+++|++|+++++.|.++.......+.... ....  ... .+..|+.|.++.| .
T Consensus       167 ~~~v~l~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~--~~~vi~~~S~SK~~~~~Gl  244 (395)
T d1xi9a_         167 TKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTK--DVPVIVMNGLSKVYFATGW  244 (395)
T ss_dssp             EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCS--SSCEEEEEESTTTTCCGGG
T ss_pred             ccEEEecCCCCCccchhhHHHHHHHHhhhhhcCeeEEeccccccccccccccchhhcCC--CCCEEEEeCcchhcccchh
Confidence            345666777899999877   577888899999999999998654332111110 0111  122 4566899987765 2


Q ss_pred             cceEEEeeCccc-ccccccCCCCccCCCCceecCCC-CCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCe
Q 048438           79 DCCCLWATNPEY-LKNKATESKPVVDYKDWQITLSR-SFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRF  156 (239)
Q Consensus        79 g~g~l~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~  156 (239)
                      =+|.+++..+.. +....... ...+    ...... ..........+. -+.+-+++..+...+..+.+.+.|++.+++
T Consensus       245 RvG~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~q~a~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  318 (395)
T d1xi9a_         245 RLGYMYFVDPENKLSEVREAI-DRLA----RIRLCPNTPAQFAAIAGLT-GPMDYLKEYMKKLKERRDYIYKRLNEIPGI  318 (395)
T ss_dssp             CCEEEEEECTTCTTHHHHHHH-HHHH----HHTCCSCSHHHHHHHHHHH-SCCHHHHHHHHHHHHHHHHHHHHHHTSTTE
T ss_pred             hcEeeEecCHHHHHHHHHHHH-HHhh----cCCCCcCHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            267766543321 11110000 0000    000000 011111222222 233455666667778888999999998666


Q ss_pred             EEEcCCCeeEEEEEEcC
Q 048438          157 EVVFPCHFAVVCFRVSP  173 (239)
Q Consensus       157 ~~~~~~~~~iv~f~~~~  173 (239)
                      .+..|.....+...++.
T Consensus       319 ~~~~p~gg~~~~~~l~~  335 (395)
T d1xi9a_         319 STTKPQGAFYIFPKIEV  335 (395)
T ss_dssp             ECCCCCBSSEECCEECS
T ss_pred             eecCCCeeEEEeEECCC
Confidence            65434334455555643

>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase homolog WlaK (PglE, Cj1121c)
species: Campylobacter jejuni [TaxId: 197]

Probab=98.16  E-value=5.6e-06  Score=68.35  Aligned_cols=136  Identities=13%  Similarity=0.076  Sum_probs=76.2

Q ss_pred             CCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEEeeCcccccc
Q 048438           14 TTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWATNPEYLKN   93 (239)
Q Consensus        14 tt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~l~~   93 (239)
                      +...|...++++|.++|+++|++++-|+||+.|.-.-..   .+-....+-.+++.+.|.+.+. +.|+++..+.+....
T Consensus       118 ~~~~G~~~d~~~i~~~~~~~~i~vIED~a~a~g~~~~~~---~~G~~gd~~~fSf~~~K~l~tg-eGG~i~tnn~~~~~~  193 (374)
T d1o69a_         118 THLYGNAAKMDEIVEICKENDIVLIEDAAEALGSFYKNK---ALGTFGEFGVYSYNGNKIITTS-GGGMLIGKNKEKIEK  193 (374)
T ss_dssp             ECGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTE---ETTSSSSEEEEECCTTSSSCCS-SCEEEEESCHHHHHH
T ss_pred             cccccchhhhHHHHHHhhccCcchhhhhhhhhcceECCe---ecCCCCceEEEeccCccccccc-cceeehhhhHHHHHh
Confidence            345788999999999999999999999999987543211   1111212445555556988654 447777766543322


Q ss_pred             ccc--CCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC
Q 048438           94 KAT--ESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD  153 (239)
Q Consensus        94 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~  153 (239)
                      ...  ..+............|-.++.-.+.+++-....+.+.+++++..+++++..+.|.+.
T Consensus       194 ~~~~~~~g~~~~~~~~~~~~G~N~rm~ei~Aaig~~qL~~l~~~i~~r~~i~~~y~~~L~~~  255 (374)
T d1o69a_         194 ARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQMEVLEQRVLKKREIYEWYKEFLGEY  255 (374)
T ss_dssp             HHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             hccccccccccccccccccCCccccccchhhhhhHHHHhhhhhhcchhHHHHHHHHhhcccc
Confidence            110  000000000011112222222222222222223455677777788999999999764

>d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Thermotoga maritima [TaxId: 2336]

Probab=98.07  E-value=0.00021  Score=57.66  Aligned_cols=180  Identities=12%  Similarity=0.053  Sum_probs=101.7

Q ss_pred             EEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-ccceEEE
Q 048438            6 LFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-LDCCCLW   84 (239)
Q Consensus         6 ~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~g~l~   84 (239)
                      -+++.+.-+|.+|.+.+.++|.+++ ++++++++|-++........ .. .... ..--.++.|+.|.++.| .-+|.++
T Consensus       140 ~~l~l~nP~NPtG~~~s~~~l~~~~-~~~~~ii~Dd~~~~~~~~~~-~~-~~~~-~~~~i~~~S~SK~~~~~G~R~G~~~  215 (334)
T d2f8ja1         140 DVVFIPNPNNPTGHVFEREEIERIL-KTGAFVALDEAYYEFHGESY-VD-FLKK-YENLAVIRTFSKAFSLAAQRVGYVV  215 (334)
T ss_dssp             EEEEEESSCTTTCCCCCHHHHHHHH-TTTCEEEEECTTGGGTCCCC-GG-GGGT-CSSEEEEEESTTTSSCTTTCEEEEE
T ss_pred             eEEEecccccccceeecHHHhhccc-cceeEEeecccchhhccccc-cc-cccc-CceEEEEecCccccchhhhhhhhcc
Confidence            3455666789999999988887764 57999999987643222111 11 1111 11336678999987755 3566666


Q ss_pred             eeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcCCCe
Q 048438           85 ATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHF  164 (239)
Q Consensus        85 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~~~~  164 (239)
                      . .+..+.......      ..+.  .+. .........+.  ..+.+++..++..+..+++.+.|+++ |+++. +++.
T Consensus       216 ~-~~~~i~~l~~~~------~~~~--~s~-~~~~~a~~~l~--~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~-~~~g  281 (334)
T d2f8ja1         216 A-SEKFIDAYNRVR------LPFN--VSY-VSQMFAKVALD--HREIFEERTKFIVEERERMKSALREM-GYRIT-DSRG  281 (334)
T ss_dssp             E-CHHHHHHHHHHS------CTTC--SCH-HHHHHHHHHHH--THHHHHHHHHHHHHHHHHHHHHHHHH-TCEEC-CCCS
T ss_pred             c-chHHHHHHHHhh------cccc--cch-hhhhhcccccc--cccchhhHHHHHHHHHHHHHHHHHHC-CCeEC-CCCc
Confidence            5 333333221100      0000  010 11111122222  24455666677777788899999887 88876 5565


Q ss_pred             eEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecC
Q 048438          165 AVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGA  232 (239)
Q Consensus       165 ~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~  232 (239)
                      +-+.+.++.                        .-...+.+.|.++|.....   .  ..++|+++.+
T Consensus       282 ~f~~~~~~~------------------------~~~~~~~~~L~~~GI~vr~---~--~~~vRis~g~  320 (334)
T d2f8ja1         282 NFVFVFMEK------------------------EEKERLLEHLRTKNVAVRS---F--REGVRITIGK  320 (334)
T ss_dssp             SEEEEECCH------------------------HHHHHHHHHHHHTTEECEE---E--TTEEEEECCC
T ss_pred             eEEEEECCC------------------------CCHHHHHHHHHHCCCEECC---C--CCeEEEEcCC
Confidence            544444332                        1123677778777754322   2  3589999753

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=5.5e-05  Score=63.26  Aligned_cols=160  Identities=11%  Similarity=0.012  Sum_probs=87.7

Q ss_pred             ccEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccc--cCCCCCcceEEEcCcccCCCc-
Q 048438            4 IPLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--IDGVEGADSFSLNAHKWFFAT-   77 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~~~~~~~Ds~~~~~hK~l~~P-   77 (239)
                      ...+++.+..+|.||.+.+   +++|+++|++++++++.|.+|......-+.....  +.+...--.+..++.|.++.| 
T Consensus       171 ~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pG  250 (418)
T d1w7la_         171 RTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATG  250 (418)
T ss_dssp             TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGG
T ss_pred             cccceeccCcCCcccccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCCCCHHHccccccccceecccCccccCCC
Confidence            3467778888999999765   6788888999999999999986543221111111  111111245678999987765 


Q ss_pred             ccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHH---h---CHHHHHHHHHHHHHHHHHHHHHHh
Q 048438           78 LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRN---Y---GMENLRHFLRSHVNMARLFERLVS  151 (239)
Q Consensus        78 ~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~---g~~g~~~~~~~~~~la~~l~~~l~  151 (239)
                      .-+|.++.. ++.+......    .....+.  .+. ........++..   .   ..+-+....++..+.++.+.+.|+
T Consensus       251 ~RvG~~v~~-~~~~~~l~~~----~~~~~~~--~~~-~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~  322 (418)
T d1w7la_         251 WKVGWVLGP-DHIMKHLRTV----HQNSVFH--CPT-QSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQ  322 (418)
T ss_dssp             GCCEEEECC-HHHHHHHHHH----HHTTTSC--CCH-HHHHHHHHHHHHHHHTTTSTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Ccccccccc-hhhhhhhccc----ccccccc--ccc-hhhHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhh
Confidence            567877763 3332221100    0000000  000 001111111111   1   122344555566677888999998


Q ss_pred             CCCCeEEEcCCCeeEEEEEEc
Q 048438          152 GDKRFEVVFPCHFAVVCFRVS  172 (239)
Q Consensus       152 ~~~g~~~~~~~~~~iv~f~~~  172 (239)
                      +. |+++..|....-+.+.++
T Consensus       323 ~~-g~~~~~P~gg~f~~~~~~  342 (418)
T d1w7la_         323 SV-GLKPLIPQGSYFLITDIS  342 (418)
T ss_dssp             TT-TCEEEECSBSSEEEEECH
T ss_pred             hc-CCcccCCCceeEEEEECc
Confidence            86 888775544444555554

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=98.04  E-value=4.4e-05  Score=63.38  Aligned_cols=134  Identities=10%  Similarity=-0.011  Sum_probs=72.6

Q ss_pred             EEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccce
Q 048438            6 LFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCC   81 (239)
Q Consensus         6 ~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g   81 (239)
                      .+|++--...+.|.+.|    +++|.++|++||+.+++|..+.+..-....+.....++. .|.++++  |.+++-...+
T Consensus       179 Aavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~~~~~~~v~-PDi~~~g--K~l~gG~~~~  255 (387)
T d1vefa1         179 AAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIV-PDILTLA--KALGGGVPLG  255 (387)
T ss_dssp             EEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCC-CSEEEEC--GGGGTTSSCE
T ss_pred             EEEEEECCCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCccCCCcccccCCcC-Cceeeec--ccCCCCcccc
Confidence            34444433445677777    999999999999999999998764222211111122443 8998875  6664434445


Q ss_pred             EEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC
Q 048438           82 CLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD  153 (239)
Q Consensus        82 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~  153 (239)
                      .+..++ +........      ....++ .+.+.......+.++.+-.+   +..++..++.+++.+.|+++
T Consensus       256 ~~~~~~-~~~~~~~~~------~~g~T~-~gnPla~aaa~a~L~~l~~~---~~~~~v~~~g~~l~~~L~~l  316 (387)
T d1vefa1         256 VAVMRE-EVARSMPKG------GHGTTF-GGNPLAMAAGVAAIRYLERT---RLWERAAELGPWFMEKLRAI  316 (387)
T ss_dssp             EEEEEH-HHHHTSCTT------SSCCSS-TTCHHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHTS
T ss_pred             ccccce-eeeeccccC------CccccC-CCCcchhhhcccchhhcccc---cccchHhhhhHHHHHHHHhc
Confidence            555543 222222110      000111 11122222223334444333   44555668889999999875

>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]

Probab=98.04  E-value=0.00018  Score=58.55  Aligned_cols=187  Identities=11%  Similarity=-0.010  Sum_probs=104.8

Q ss_pred             cEEEEEecCCCCcccccChhHHHHHHH--HhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-ccce
Q 048438            5 PLFLCATIGTTAITAVDPLKPLCDVAK--QFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-LDCC   81 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~pl~~i~~i~~--~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~g   81 (239)
                      +-+|+.+.-+|.+|.+.+-+++..++.  +++.++++|-++.-..-  +...........--++..+++|.++.| .-+|
T Consensus       145 ~~~v~~~~pnNPtG~~~~~~~~~~~~~~~~~~~~~iidd~~~~f~~--~~~~~~~~~~~~~~iv~~S~SK~~~laGlRiG  222 (354)
T d1fg7a_         145 VKVVYVCSPNNPTGQLINPQDFRTLLELTRGKAIVVADEAYIEFCP--QASLAGWLAEYPHLAILRTLSKAFALAGLRCG  222 (354)
T ss_dssp             EEEEEEESSCTTTCCCCCHHHHHHHHHHHTTTCEEEEECTTGGGSG--GGCSGGGTTTCTTEEEEEESSSTTCCGGGCCE
T ss_pred             cceeeccCCCccceeEeeecccccccccccccccccccccchhhcc--ccccchhhcccccceEEeCCccccCCCccccc
Confidence            557788888999999888655544433  36788888887653211  111111111112345667999998755 4477


Q ss_pred             EEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCH---HHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 048438           82 CLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGM---ENLRHFLRSHVNMARLFERLVSGDKRFEV  158 (239)
Q Consensus        82 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~---~g~~~~~~~~~~la~~l~~~l~~~~g~~~  158 (239)
                      .++. +++.+.......      ..+.      ........+...+..   +.+...+++..+..+++.+.+.+++++..
T Consensus       223 y~i~-~~~~i~~l~~~~------~~~~------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~  289 (354)
T d1fg7a_         223 FTLA-NEEVINLLMKVI------APYP------LSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQ  289 (354)
T ss_dssp             EEEE-CHHHHHHHHHHS------CSSC------SCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEE
T ss_pred             cccc-cchhhhhhhhhc------Cccc------hhhHHHHHHHHHHhhhccccccccchhhhhHHHHHHHHHHhCCCcce
Confidence            7664 444433221100      0011      011111112222222   23344555566777888889998888776


Q ss_pred             EcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECC-EeEEEEEecC
Q 048438          159 VFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGG-IYAIRFATGA  232 (239)
Q Consensus       159 ~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g-~~~lR~~~~~  232 (239)
                      +.+...+-+.+++++.                      +    .+.+.|.++|.+........+ ..++|+++..
T Consensus       290 ~~p~~~~f~~~~~~~~----------------------~----~~~~~L~~~gIlvr~~~~~~~~~~~lRisigt  338 (354)
T d1fg7a_         290 VFDSETNYILARFKAS----------------------S----AVFKSLWDQGIILRDQNKQPSLSGCLRITVGT  338 (354)
T ss_dssp             ECCCSSSEEEEEETTH----------------------H----HHHHHHHHTTEECEECTTSTTCTTEEEEECCC
T ss_pred             eCCCCceEEEEeCCCH----------------------H----HHHHHHHHCCcEEecCCCCCCCCCEEEEEeCC
Confidence            6677778777777531                      1    466677778776554333222 4699999763

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.01  E-value=0.0001  Score=62.48  Aligned_cols=181  Identities=15%  Similarity=0.110  Sum_probs=94.6

Q ss_pred             cEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCC-CcceEEEcCcccCCCccc
Q 048438            5 PLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVE-GADSFSLNAHKWFFATLD   79 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~-~~Ds~~~~~hK~l~~P~g   79 (239)
                      ..+|++--.....|.+.|    +++|.++|++||+.+++|..|.+..-....+.....+++ ..|.++++  |.+++   
T Consensus       249 iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~e~~gi~~~PDiv~~g--K~l~~---  323 (461)
T d1ohwa_         249 VAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFS--KKMMT---  323 (461)
T ss_dssp             EEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTCSSTTSSSSGGGGGCCSSCCSEEEEC--GGGSS---
T ss_pred             cceeeeccccccccccCchhhHHHHHHHHHHhhCcceeccccccccccccccccccccccccCchhhhhh--hcccc---
Confidence            445666555566676555    899999999999999999998764322211111122332 37888765  76643   


Q ss_pred             ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC----CC
Q 048438           80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD----KR  155 (239)
Q Consensus        80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~----~g  155 (239)
                       |.+... .. +......     . ...++ .+.+.......++|+.+..++   .+++..++.++|.++|+++    |.
T Consensus       324 -g~~~~~-~~-~~~~~~~-----~-~~~T~-~g~p~~~aaa~a~l~~i~~~~---l~~~~~~~g~~l~~~l~~l~~~~~~  390 (461)
T d1ohwa_         324 -GGFFHK-EE-FRPNAPY-----R-IFNTW-LGDPSKNLLLAEVINIIKRED---LLSNAAHAGKVLLTGLLDLQARYPQ  390 (461)
T ss_dssp             -EEEEEC-GG-GSCSSTT-----S-SCCSC-SSCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             -cccccc-cc-ccccccc-----c-ccccc-ccccccchhhcccchhhhhhh---HHHHHHHHHHHHHHHHHHHHhhCCC
Confidence             444432 22 2111100     0 00011 111222233334455554443   3444556777777776553    32


Q ss_pred             -eEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEec
Q 048438          156 -FEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATG  231 (239)
Q Consensus       156 -~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~  231 (239)
                       +.-+. -.-.++.+.+++                       ++...++.+.+.++|.+...    .+...||+.+.
T Consensus       391 ~i~~vr-G~Gl~~~ie~~~-----------------------~~~~~~i~~~~~~~Gll~~~----~~~~~ir~~Pp  439 (461)
T d1ohwa_         391 FISRVR-GRGTFCSFDTPD-----------------------ESIRNKLISIARNKGVMLGG----CGDKSIRFRPT  439 (461)
T ss_dssp             TCEEEE-EETTEEEEECSS-----------------------HHHHHHHHHHHHHTTEECEE----ETTTEEECCCC
T ss_pred             ceEEee-eeeEEEEEEcCC-----------------------HHHHHHHHHHHHHCCeEEee----CCCCEEEEeCC
Confidence             11010 011255666643                       34556788888888865432    14567898753

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

Probab=97.90  E-value=1.4e-05  Score=67.47  Aligned_cols=79  Identities=19%  Similarity=0.129  Sum_probs=49.2

Q ss_pred             cEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438            5 PLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC   80 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~   80 (239)
                      ..+|++--.....|.+.|    +++|.++|++||+.+++|..+.+..-....+.....++. .|.++++  |.+++-...
T Consensus       202 iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~~~~gv~-PDi~~~g--K~l~gG~p~  278 (431)
T d1zoda1         202 LAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVT-PDILTLS--KTLGAGLPL  278 (431)
T ss_dssp             EEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCC-CSEEEEC--HHHHTTSSC
T ss_pred             ccceeeccccccCCccCCCHHHHHHHHHHHHhcCceEEeccccccccccccccccccCCCC-cchhccc--ccccccccc
Confidence            344444444455667766    999999999999999999998863221211111123554 8998876  555443334


Q ss_pred             eEEEee
Q 048438           81 CCLWAT   86 (239)
Q Consensus        81 g~l~~~   86 (239)
                      +.++.+
T Consensus       279 ~av~~~  284 (431)
T d1zoda1         279 AAIVTS  284 (431)
T ss_dssp             EEEEEC
T ss_pred             ceeeee
Confidence            555554

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

Probab=97.82  E-value=5.4e-05  Score=63.74  Aligned_cols=140  Identities=10%  Similarity=-0.012  Sum_probs=70.7

Q ss_pred             cEEEEEecC-CCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCC-Ccc
Q 048438            5 PLFLCATIG-TTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFF-ATL   78 (239)
Q Consensus         5 p~~vv~t~g-tt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~-~P~   78 (239)
                      +.+|++.-. ...-|.+.|    +++|.++|++||+.+++|..|.+.--....+.....++. .|.++++  |.++ +-.
T Consensus       205 iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~~~~~~~v~-PDi~~~g--K~l~gG~~  281 (429)
T d1s0aa_         205 IAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIA-PDILCLG--KALTGGTM  281 (429)
T ss_dssp             EEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCC-CSEEEEC--GGGGTSSS
T ss_pred             cceeeecceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhccccccccccccccccceec-ccccccc--cccccccc
Confidence            344444432 233444332    899999999999999999998864222221211133443 8998875  5552 213


Q ss_pred             cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC
Q 048438           79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD  153 (239)
Q Consensus        79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~  153 (239)
                      ..|++..++ +............+- ...+ ..+.+.......+.|+.+..+.   ...+..++.++|.++|+++
T Consensus       282 p~~av~~~~-~i~~~~~~~~~~~~~-~~~T-~~gnp~~~aaa~a~L~~i~~~~---~~~~~~~~g~~l~~~L~~l  350 (429)
T d1s0aa_         282 TLSATLTTR-EVAETISNGEAGCFM-HGPT-FMGNPLACAAANASLAILESGD---WQQQVADIEVQLREQLAPA  350 (429)
T ss_dssp             CCEEEEECH-HHHHHHHTSTTSSCS-CCCT-TTTCHHHHHHHHHHHHHHHTCH---HHHHHHHHHHHHHHHHGGG
T ss_pred             cccchhhHH-HHHhccCCCCCccee-ecCC-CCCCcccchhhhcccccccccc---ccchhhHHHHHHHHHHHHh
Confidence            355566543 332211110000000 0001 1111222233334455543343   4455558888999988664

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

Probab=97.77  E-value=0.00015  Score=60.88  Aligned_cols=79  Identities=13%  Similarity=-0.106  Sum_probs=51.9

Q ss_pred             cEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438            5 PLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC   80 (239)
Q Consensus         5 p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~   80 (239)
                      ..+|++--...+.|.+-|    +++|.++|++||+++++|.+|.+. -....+.....++. .|.++++=-...+.|  .
T Consensus       200 iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~-r~g~~~~~~~~gi~-PDi~~~gK~lggG~p--~  275 (427)
T d2gsaa_         200 IAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGF-RIAYGGVQEKFGVT-PDLTTLGKIIGGGLP--V  275 (427)
T ss_dssp             EEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTBTTCHHHHTTCC-CSEEEECGGGGTTSC--C
T ss_pred             eEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHhceeeeeccccccc-eecccchHHhcCCC-HHHHhhhhccCCCcc--e
Confidence            456666555566788888    999999999999999999999764 22221111133453 899888754333334  4


Q ss_pred             eEEEeeC
Q 048438           81 CCLWATN   87 (239)
Q Consensus        81 g~l~~~~   87 (239)
                      |.+..++
T Consensus       276 ~a~~~~~  282 (427)
T d2gsaa_         276 GAYGGKR  282 (427)
T ss_dssp             EEEEECH
T ss_pred             eeeeehH
Confidence            5555543

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

Probab=97.76  E-value=0.00012  Score=61.01  Aligned_cols=161  Identities=11%  Similarity=0.005  Sum_probs=87.6

Q ss_pred             ccEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccc--cCCCCCcceEEEcCcccCCCc-
Q 048438            4 IPLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--IDGVEGADSFSLNAHKWFFAT-   77 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~~~~~~~Ds~~~~~hK~l~~P-   77 (239)
                      .+.+++++..+|.||.+.+   +++|+++|++|+++++.|.+|......-......  +.+...--.++.++.|.++.| 
T Consensus       171 ~~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~pG  250 (418)
T d2r5ea1         171 KTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTG  250 (418)
T ss_dssp             TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGG
T ss_pred             cccceecCCcCccccccccHHHHHHHhhhhhcCCeeeecccchhhhccCCCccccccccccccceeeeeecCCccccCCC
Confidence            4557777888999999877   5668888999999999999997544322111111  111111224566999998655 


Q ss_pred             ccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHH------hCHHHHHHHHHHHHHHHHHHHHHHh
Q 048438           78 LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRN------YGMENLRHFLRSHVNMARLFERLVS  151 (239)
Q Consensus        78 ~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~g~~g~~~~~~~~~~la~~l~~~l~  151 (239)
                      .-+|.++. .+..+....... ..     .....+... ...+...+..      ...+-+.+..++.....+++.+.|+
T Consensus       251 lRiG~~~~-~~~~i~~~~~~~-~~-----~~~~~~~~~-q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~  322 (418)
T d2r5ea1         251 WKIGWAYG-PEALLKNLQMVH-QN-----CVYTCATPI-QEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLA  322 (418)
T ss_dssp             GCCEEEES-CHHHHHHHHHHH-TT-----TTCSCCHHH-HHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccc-cchhhhhhhhcc-cc-----cccccccch-hhhccccccccccccccchhhHHHHHHHHHHhhhhHHhhHh
Confidence            44777665 333332221000 00     000011100 0111111111      1122345555666677888999999


Q ss_pred             CCCCeEEEcCCCeeEEEEEEcC
Q 048438          152 GDKRFEVVFPCHFAVVCFRVSP  173 (239)
Q Consensus       152 ~~~g~~~~~~~~~~iv~f~~~~  173 (239)
                      +. |+++..|....-+...+++
T Consensus       323 ~~-g~~~~~P~gg~f~~~~~~~  343 (418)
T d2r5ea1         323 EV-GMNPTVPQGGYFMVADWSS  343 (418)
T ss_dssp             HT-TCEEEECSBSSEEEEECGG
T ss_pred             hc-CCcccCCCceeEEEEEccc
Confidence            86 8887655444445556543

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

Probab=97.58  E-value=0.0001  Score=60.81  Aligned_cols=197  Identities=12%  Similarity=0.058  Sum_probs=104.3

Q ss_pred             ccEEEEEecCCCCcccccCh---hHHHHHHHHhCCEEEEecccccccccCcccccccC--CCCCcceEEEcCcccCCCc-
Q 048438            4 IPLFLCATIGTTAITAVDPL---KPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFID--GVEGADSFSLNAHKWFFAT-   77 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl---~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~--~~~~~Ds~~~~~hK~l~~P-   77 (239)
                      .+-+++.+.-+|.||++-+.   ++|+++|++++++++.|..+......-........  ....--.+..++.|.++.| 
T Consensus       159 ~~~~i~l~~P~NPtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~pG  238 (382)
T d1u08a_         159 RTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTG  238 (382)
T ss_dssp             TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGG
T ss_pred             CccEEEECCCCcccccccccccchhhhhhhccccceeeeecchhhccccccccccccccccccCcEEEEeeccccccCCc
Confidence            35567778889999998775   55667778899999999987643222111110000  0001225677888987766 


Q ss_pred             ccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438           78 LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE  157 (239)
Q Consensus        78 ~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~  157 (239)
                      .-+|.++. .+..+......       ......+...+....+..++.. +.+.+++..++..+..+.+.+.+.. .|++
T Consensus       239 ~RiG~~v~-~~~~~~~~~~~-------~~~~~~~~~~~~q~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~  308 (382)
T d1u08a_         239 WKVGYCVA-PAPISAEIRKV-------HQYLTFSVNTPAQLALADMLRA-EPEHYLALPDFYRQKRDILVNALNE-SRLE  308 (382)
T ss_dssp             GCCEEEEC-CHHHHHHHHHH-------HHHHTSSCCHHHHHHHHHHHHH-CTHHHHTHHHHHHHHHHHHHHHTTS-SSCE
T ss_pred             ccchhhhc-cchhHHHHHhh-------hccccccccccccccccccccc-chHHHHHHHHHHHhhhhhhhhhhcc-CCcE
Confidence            55787765 33333222100       0000000001112222333332 3445556666666777888888866 5888


Q ss_pred             EEcCCCee-EEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhc-CcEEEEEEEE----CCEeEEEEEec
Q 048438          158 VVFPCHFA-VVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINAS-GKAYMTNVVL----GGIYAIRFATG  231 (239)
Q Consensus       158 ~~~~~~~~-iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~----~g~~~lR~~~~  231 (239)
                      +. +|+.+ -+.++++....              .+       ...+.++|.++ |...++....    .+..++|+++.
T Consensus       309 ~~-~p~gg~~~~~~~~~~~~--------------~d-------~~e~~~~ll~e~gV~v~PG~~F~~~~~~~~~~Ris~~  366 (382)
T d1u08a_         309 IL-PCEGTYFLLVDYSAVST--------------LD-------DVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFA  366 (382)
T ss_dssp             EC-CCCBSSEEEEECTTTCC--------------SC-------HHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECC
T ss_pred             Ee-cCCceEEEEEecCCCCC--------------CC-------HHHHHHHHHHHCCEEEEcchhhCCCCCCCCEEEEEEe
Confidence            76 44444 34555553211              01       11344555444 5554443332    24578999975


Q ss_pred             C
Q 048438          232 A  232 (239)
Q Consensus       232 ~  232 (239)
                      +
T Consensus       367 ~  367 (382)
T d1u08a_         367 K  367 (382)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

Probab=95.09  E-value=0.011  Score=48.15  Aligned_cols=83  Identities=13%  Similarity=-0.049  Sum_probs=53.3

Q ss_pred             ccEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCccccc---ccCCCCCcceEEEcCcccCCCc
Q 048438            4 IPLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRH---FIDGVEGADSFSLNAHKWFFAT   77 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~---~~~~~~~~Ds~~~~~hK~l~~P   77 (239)
                      ...+++.+..+|.||.+.+   +++|+++|++|+++++.|.+|.......+....   ...+...-..+..++.|.+..|
T Consensus       172 ~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~  251 (396)
T d2q7wa1         172 GDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNFGLY  251 (396)
T ss_dssp             TCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCG
T ss_pred             CcEEEEecCCcCCcCeecCHHHHHHHHHHHhcCCeEEEEeccccccccCCccCchHhhhhhhhccccccccccccccccc
Confidence            4567788888999999766   568889999999999999999754332111110   0111111345566777876554


Q ss_pred             -ccceEEEee
Q 048438           78 -LDCCCLWAT   86 (239)
Q Consensus        78 -~g~g~l~~~   86 (239)
                       .-+|.+...
T Consensus       252 G~R~G~~~~~  261 (396)
T d2q7wa1         252 NERVGACTLV  261 (396)
T ss_dssp             GGCCEEEEEE
T ss_pred             CCCccccccc
Confidence             236666664

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

Probab=94.93  E-value=0.031  Score=45.79  Aligned_cols=85  Identities=11%  Similarity=-0.103  Sum_probs=56.8

Q ss_pred             CccEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCccccc-----c--cCCCCCcceEEEcCcc
Q 048438            3 LIPLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRH-----F--IDGVEGADSFSLNAHK   72 (239)
Q Consensus         3 ~~p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~-----~--~~~~~~~Ds~~~~~hK   72 (239)
                      +.+.+++.+..+|.||.+-+   +++|+++|++++++++.|.+|......-.....     .  ......--++..++.|
T Consensus       175 ~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK  254 (412)
T d1yaaa_         175 EGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAK  254 (412)
T ss_dssp             TTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTT
T ss_pred             CceEEEEecCCCCCccccCCHHHHHHHHhhhccCCEEEeecceeeecccCCcccchhhhhhhhhccccCCCeEEEEecCC
Confidence            45678888899999999876   788999999999999999999754331110000     0  0111112356779999


Q ss_pred             cCCCc-ccceEEEeeC
Q 048438           73 WFFAT-LDCCCLWATN   87 (239)
Q Consensus        73 ~l~~P-~g~g~l~~~~   87 (239)
                      .++.| .=+|.+++..
T Consensus       255 ~~~~~G~RiG~~~~~~  270 (412)
T d1yaaa_         255 NAGMYGERVGCFHLAL  270 (412)
T ss_dssp             TSCCGGGCEEEEEEEC
T ss_pred             ccccCcCceEEEEEch
Confidence            87654 3477777743

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

Probab=94.82  E-value=0.041  Score=44.95  Aligned_cols=82  Identities=17%  Similarity=0.053  Sum_probs=53.5

Q ss_pred             ccEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccc-----cccCCCCCcceEEEcCcccCC
Q 048438            4 IPLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFR-----HFIDGVEGADSFSLNAHKWFF   75 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~-----~~~~~~~~~Ds~~~~~hK~l~   75 (239)
                      ...+++.+..+|.||.+.+   +++|+++|++||++++.|.+|......-....     ..... ..-..+..++.|.++
T Consensus       183 ~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~s~sk~~~  261 (412)
T d1ajsa_         183 FSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSE-GFELFCAQSFSKNFG  261 (412)
T ss_dssp             TCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHT-TCCEEEEEECTTTSC
T ss_pred             CcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhhhhhhh-ccccccccccccccc
Confidence            4567778888999999876   78899999999999999999875433211000     00111 124455667777766


Q ss_pred             Cc-ccceEEEee
Q 048438           76 AT-LDCCCLWAT   86 (239)
Q Consensus        76 ~P-~g~g~l~~~   86 (239)
                      .| ..+|.+.+.
T Consensus       262 ~~G~R~G~~~~~  273 (412)
T d1ajsa_         262 LYNERVGNLTVV  273 (412)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             CCCCCccccccc
Confidence            55 336666654

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

Probab=94.58  E-value=0.055  Score=43.94  Aligned_cols=45  Identities=22%  Similarity=0.210  Sum_probs=37.8

Q ss_pred             CccEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEeccccccc
Q 048438            3 LIPLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSA   47 (239)
Q Consensus         3 ~~p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~   47 (239)
                      ....+++.+..+|.||.+.+   +++|+++|++|+++++.|.+|....
T Consensus       174 ~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~  221 (401)
T d7aata_         174 EKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFA  221 (401)
T ss_dssp             TTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTT
T ss_pred             CceEEEEecCCCCCccccCCHHHHHHHHHHHhcceEEEEEeccchhhh
Confidence            34578888888999999766   6788999999999999999997544

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

Probab=93.34  E-value=0.055  Score=43.71  Aligned_cols=44  Identities=16%  Similarity=0.132  Sum_probs=36.9

Q ss_pred             ccEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEeccccccc
Q 048438            4 IPLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSA   47 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~   47 (239)
                      ...+++.+..+|.||.+.+   +++|+++|++|+++++.|.+|....
T Consensus       169 ~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~  215 (394)
T d2ay1a_         169 GDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFG  215 (394)
T ss_dssp             TCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSS
T ss_pred             CcEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcceEEEEEeccchhhc
Confidence            3567777888999999766   7888999999999999999997553

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

Probab=93.29  E-value=0.16  Score=41.73  Aligned_cols=72  Identities=10%  Similarity=-0.098  Sum_probs=48.6

Q ss_pred             ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEeccccccc-ccCcccccccCCCCCcceEEEcCcccCCCc-ccce
Q 048438            4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSA-CIFPEFRHFIDGVEGADSFSLNAHKWFFAT-LDCC   81 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~-~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~g   81 (239)
                      .+.+++++.-+|.||.+..       +-.+++++++|.++.... .+++       ....-+.+..++.|.++.| .=+|
T Consensus       196 ~~~ii~l~sPnNPtG~l~~-------~v~~~~~~I~DEaY~~~~f~~~~-------~~~~~~Ivl~S~SK~fglaGlRiG  261 (425)
T d2hoxa1         196 EQYIEMVTSPNNPEGLLRH-------AVIKGCKSIYDMVYYWPHYTPIK-------YKADEDILLFTMSKFTGHSGSRFG  261 (425)
T ss_dssp             GGEEEEEESSCTTTCCCCC-------CSSTTCEEEEECTTCSTTTSCCC-------SCBCCSEEEEEHHHHTSCGGGCCE
T ss_pred             CceEEEEECCCCCCcchhh-------hhhhCCEEEEeccccCccccchh-------hhcCCeEEEEeCHHhccCcchhee
Confidence            4678899999999998732       123589999999985422 2222       1112578889999997755 2377


Q ss_pred             EEEeeCcc
Q 048438           82 CLWATNPE   89 (239)
Q Consensus        82 ~l~~~~~~   89 (239)
                      .+++.++.
T Consensus       262 w~i~~~~~  269 (425)
T d2hoxa1         262 WALIKDES  269 (425)
T ss_dssp             EEEECCHH
T ss_pred             eEEeCCHH
Confidence            77776543

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

Probab=90.76  E-value=0.066  Score=43.38  Aligned_cols=83  Identities=16%  Similarity=-0.002  Sum_probs=51.8

Q ss_pred             ccEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCccccc---ccCCCCCcceEEEcCcccCCCc
Q 048438            4 IPLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRH---FIDGVEGADSFSLNAHKWFFAT   77 (239)
Q Consensus         4 ~p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~---~~~~~~~~Ds~~~~~hK~l~~P   77 (239)
                      .+.+++....+|.||.+.+   +++|+++|++|+++++.|.+|.......+....   .......-=.+..++.|.++.|
T Consensus       173 ~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~  252 (397)
T d3tata_         173 RSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLY  252 (397)
T ss_dssp             SCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCCCEECBCCHHHHTBT
T ss_pred             ccEEEEecCCCCCCCeeCCHHHHHHHHHHHhhcCeeEEeehhhhhhccCCcccchhhhhhhhcCCceEEEecCccccccc
Confidence            4556777778899999766   677889999999999999999754332111100   0111111124567888976554


Q ss_pred             -ccceEEEee
Q 048438           78 -LDCCCLWAT   86 (239)
Q Consensus        78 -~g~g~l~~~   86 (239)
                       .-+|.+...
T Consensus       253 G~RiG~~~~~  262 (397)
T d3tata_         253 GERVGGLSVM  262 (397)
T ss_dssp             TTCCBCCEEE
T ss_pred             Cccccccccc
Confidence             224666553

>d1mxga2 c.1.8.1 (A:1-361) Bacterial alpha-amylase {Archaeon Pyrococcus woesei [TaxId: 2262]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Archaeon Pyrococcus woesei [TaxId: 2262]

Probab=80.85  E-value=0.46  Score=37.56  Aligned_cols=30  Identities=27%  Similarity=0.295  Sum_probs=27.2

Q ss_pred             CCCCcccccChhHHHHHHHHhCCEEEEecc
Q 048438           13 GTTAITAVDPLKPLCDVAKQFGIWVHVDAA   42 (239)
Q Consensus        13 gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A   42 (239)
                      ..+..|+.+++++|++-||++||.+++|.+
T Consensus        79 vd~~~Gt~~d~~~LV~~aH~~GikVIlD~V  108 (361)
T d1mxga2          79 VETRFGSKEELVRLIQTAHAYGIKVIADVV  108 (361)
T ss_dssp             SSCSSCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCEEEEEee
Confidence            356788999999999999999999999997