Citrus Sinensis ID: 048473

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80-
Protein Sequence
LLSPSSSFSFNIFFDHPLIFNQNSTMPSQLGNINNDYLETLVASARPFLRGELEAIDKNLPSLIVVLRSVGAGESTEGAHS
Secondary Structure (PSIPRED)
ccccccccEEEEEEcccHHHcccccccccccccccHHHHHHHHHcccccccHHHHcccccHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEccccEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
llspsssfsfniffdhplifnqnstmpsqlgninnDYLETLVASARPFLRGELEAIDKNLPSLIVVLRSvgagestegahs
Flexible Loop (DISEMBL)
LLSPSSSFSFNIFFDHPLIFNQNSTMPSQLGNINNDYLETLVASARPFLRGELEAIDKNLPSLIVVLRsvgagestegahs
Low Complexity Region (SEG)
LLspsssfsfniffDHPLIFNQNSTMPSQLGNINNDYLETLVASARPFLRGELEAIDKNLPSLIVVLRSVGAGESTEGAHS
Disordered region (IsUnstruct)
*******FSFNIFFDHPLIFNQNSTMPSQLGNINNDYLETLVASARPFLRGELEAIDKNLPSLIVVLRSV***********
Disordered Region (DISOPRED)
******S*SFNIFFDHPLIFN***************YLETLVASARPFLRGELEAIDKNLPSLIVVLR*************
Disordered Region (DISEMBL)
LLSPSSSFSFNIFFDHPLIFNQNSTMPSQLGNINNDYLETLVASARPFLRGELEAIDKNLPSLIVVLRSVG**********
Disordered Region (DISPRO)
*****SSFSFNIFFDHPLIFNQNSTMPSQLGNINNDYLETLVASARPFLRGELEAIDKNLPSLIVVLRS************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
LLSPSSSFSFNIFFDHPLIFNQNSTMPSQLGNINNDYLETLVASARPFLRGELEAIDKNLPSLIVVLRSVGAGESTEGAHS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	81
255544149	424	conserved hypothetical protein [Ricinus	0.604	0.115	0.714	1e-12
224095202	430	predicted protein [Populus trichocarpa]	0.481	0.090	0.871	2e-11
297742731	361	unnamed protein product [Vitis vinifera]	0.469	0.105	0.789	9e-09
225463772	426	PREDICTED: uncharacterized protein LOC10	0.469	0.089	0.789	9e-09
225463770	426	PREDICTED: uncharacterized protein LOC10	0.469	0.089	0.789	9e-09
297742729	298	unnamed protein product [Vitis vinifera]	0.469	0.127	0.789	1e-08
147832395	402	hypothetical protein VITISV_014471 [Viti	0.469	0.094	0.763	2e-08
388504458	428	unknown [Medicago truncatula]	0.481	0.091	0.692	3e-07
357439007	462	hypothetical protein MTR_1g039190 [Medic	0.481	0.084	0.692	3e-07
326487554	452	predicted protein [Hordeum vulgare subsp	0.592	0.106	0.557	3e-07

>gi|255544149|ref|XP_002513137.1| conserved hypothetical protein [Ricinus communis] gi|223548148|gb|EEF49640.1| conserved hypothetical protein [Ricinus communis]

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/49 (71%), Positives = 42/49 (85%)

Query: 26 MPSQLGNINNDYLETLVASARPFLRGELEAIDKNLPSLIVVLRSVGAGE 74
          MPS L    ++YL+TL+AS RPFLRGELE++DKNLP+LI VLRSVGAGE
Sbjct: 1  MPSSLHQETSNYLQTLLASTRPFLRGELESVDKNLPALISVLRSVGAGE 49

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224095202|ref|XP_002310360.1| predicted protein [Populus trichocarpa] gi|222853263|gb|EEE90810.1| predicted protein [Populus trichocarpa]

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/39 (87%), Positives = 38/39 (97%)

Query: 36 DYLETLVASARPFLRGELEAIDKNLPSLIVVLRSVGAGE 74
          +YL+TL+ASARPFLRGELE+IDKNLPSLI VLRSVGAGE
Sbjct: 17 NYLQTLLASARPFLRGELESIDKNLPSLISVLRSVGAGE 55

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742731|emb|CBI35365.3| unnamed protein product [Vitis vinifera]

 Score = 64.3 bits (155), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 30/38 (78%), Positives = 34/38 (89%)

Query: 37  YLETLVASARPFLRGELEAIDKNLPSLIVVLRSVGAGE 74
           +L+TL+ASARPFLRGELEA+   LPSLI VLRSVGAGE
Sbjct: 78  HLQTLLASARPFLRGELEAVHPKLPSLISVLRSVGAGE 115

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463772|ref|XP_002268460.1| PREDICTED: uncharacterized protein LOC100252690 [Vitis vinifera]

 Score = 64.3 bits (155), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 30/38 (78%), Positives = 34/38 (89%)

Query: 37 YLETLVASARPFLRGELEAIDKNLPSLIVVLRSVGAGE 74
          +L+TL+ASARPFLRGELEA+   LPSLI VLRSVGAGE
Sbjct: 14 HLQTLLASARPFLRGELEAVHPKLPSLISVLRSVGAGE 51

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463770|ref|XP_002268202.1| PREDICTED: uncharacterized protein LOC100257837 [Vitis vinifera]

 Score = 64.3 bits (155), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 30/38 (78%), Positives = 34/38 (89%)

Query: 37 YLETLVASARPFLRGELEAIDKNLPSLIVVLRSVGAGE 74
          +L+TL+ASARPFLRGELEA+   LPSLI VLRSVGAGE
Sbjct: 14 HLQTLLASARPFLRGELEAVHPKLPSLISVLRSVGAGE 51

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742729|emb|CBI35363.3| unnamed protein product [Vitis vinifera]

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/38 (78%), Positives = 34/38 (89%)

Query: 37 YLETLVASARPFLRGELEAIDKNLPSLIVVLRSVGAGE 74
          +L+TL+ASARPFLRGELEA+   LPSLI VLRSVGAGE
Sbjct: 14 HLQTLLASARPFLRGELEAVHPKLPSLISVLRSVGAGE 51

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147832395|emb|CAN77784.1| hypothetical protein VITISV_014471 [Vitis vinifera]

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/38 (76%), Positives = 34/38 (89%)

Query: 37 YLETLVASARPFLRGELEAIDKNLPSLIVVLRSVGAGE 74
          +L+TL+ASARPFLRGELEA+   LPS+I VLRSVGAGE
Sbjct: 14 HLQTLLASARPFLRGELEAVHPKLPSIISVLRSVGAGE 51

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388504458|gb|AFK40295.1| unknown [Medicago truncatula]

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/39 (69%), Positives = 32/39 (82%)

Query: 36 DYLETLVASARPFLRGELEAIDKNLPSLIVVLRSVGAGE 74
          +YLETL+ SA+PFLR EL +ID  LPSLI +LRSVGA E
Sbjct: 13 EYLETLLTSAKPFLRNELISIDPKLPSLITILRSVGASE 51

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357439007|ref|XP_003589780.1| hypothetical protein MTR_1g039190 [Medicago truncatula] gi|355478828|gb|AES60031.1| hypothetical protein MTR_1g039190 [Medicago truncatula]

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/39 (69%), Positives = 32/39 (82%)

Query: 36 DYLETLVASARPFLRGELEAIDKNLPSLIVVLRSVGAGE 74
          +YLETL+ SA+PFLR EL +ID  LPSLI +LRSVGA E
Sbjct: 13 EYLETLLTSAKPFLRNELISIDPKLPSLITILRSVGASE 51

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326487554|dbj|BAK05449.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/52 (55%), Positives = 37/52 (71%), Gaps = 4/52 (7%)

Query: 23 NSTMPSQLGNINNDYLETLVASARPFLRGELEAIDKNLPSLIVVLRSVGAGE 74
          N T PS     N+D L++L+ +ARPFLRG+L A+D  LPSL+ VL S GAGE
Sbjct: 24 NGTGPST----NDDALQSLLVAARPFLRGDLAAVDPELPSLVSVLVSAGAGE 71

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	81
TAIR|locus:2095350	425	AT3G19990 "AT3G19990" [Arabido	0.444	0.084	0.722	1.5e-07

TAIR|locus:2095350 AT3G19990 "AT3G19990" [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 26/36 (72%), Positives = 30/36 (83%)

Query:    39 ETLVASARPFLRGELEAIDKNLPSLIVVLRSVGAGE 74
             + ++ SARPFLRGELE ID  LPSLI VL+SVGAGE
Sbjct:    11 DAVLESARPFLRGELEKIDPKLPSLIAVLKSVGAGE 46


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.133   0.368    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       81        69   0.00091  102 3  11 23  0.36    29
                                                     29  0.39    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  420 (45 KB)
  Total size of DFA:  73 KB (2062 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.08u 0.28s 8.36t   Elapsed:  00:00:01
  Total cpu time:  8.08u 0.28s 8.36t   Elapsed:  00:00:01
  Start:  Sat May 11 04:26:55 2013   End:  Sat May 11 04:26:56 2013

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00