Citrus Sinensis ID: 048536

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------
Protein Sequence
VDEDEIYWRQKKDDEELEWSQNSSHVISQLAQCFTSAMVGPRAWIGGLFNRSANRRNERFHDYHLTPPQEERLQRLQERLQTPFDESRPDHQAALRDLWRFAFPNVVLNGMISEQWKDMGWQGPNPSTDFRGCGFISLENLLFLAKNYPASFQRLLFKQGGNRATWEYPFAVAGINVSFMLIKMLDLFSEKPRCLPGMNFVRILGEDEAAFDVLYCVAFEMMDAQWLAMHASYMEFNEVLKVTRRQLERELSLEDIDRIQDLPAYNL
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccccccHHHHHHccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHcccEccccccccccHHccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccccccccc
Coil and Loop (DISEMBL)
VDEDEIywrqkkddeelewsqnSSHVISQLAQCFTsamvgprawigglfnrsanrrnerfhdyhltppqEERLQRLQERlqtpfdesrpdHQAALRDLWRFAFPNVVLNGMISeqwkdmgwqgpnpstdfrgcgfiSLENLLFLAKNYPASFQRLLFkqggnratweypfavAGINVSFMLIKMLDLfsekprclpgmnfvrilgedeAAFDVLYCVAFEMMDAQWLAMHASYMEFNEVLKVTRRQLERelsledidriqdlpaynl
Flexible Loop (DISEMBL)
vdedeiywrqkkddeelewsQNSSHVISQLAQCFTSAMVGPRAWIGGLFNRSANRRNERFHDYHLTPPQEERLQRLQERLQTPFDESRPDHQAALRDLWRFAFPNVVLNGMISEQWKDMGWQGPNPSTDFRGCGFISLENLLFLAKNYPASFQRLLFKQGGNRATWEYPFAVAGINVSFMLIKMLDLFSEKPRCLPGMNFVRILGEDEAAFDVLYCVAFEMMDAQWLAMHASYMEFNEVLKVTRRQLerelsledidriqdlpaynl
Low Complexity Region (SEG)
VDEDEIYWRQKKDDEELEWSQNSSHVISQLAQCFTSAMVGPRAWIGGLFNRSANRRNERFHDYHLTPPqeerlqrlqerlqTPFDESRPDHQAALRDLWRFAFPNVVLNGMISEQWKDMGWQGPNPSTDFRGCGFISLENLLFLAKNYPASFQRLLFKQGGNRATWEYPFAVAGINVSFMLIKMLDLFSEKPRCLPGMNFVRILGEDEAAFDVLYCVAFEMMDAQWLAMHASYMEFNEVLKVTRRQLERELSLEDIDRIQDLPAYNL
Disordered region (IsUnstruct)
************************HVISQLAQCFTSAMVGPRAWIGGLFNRS*****************************************ALRDLWRFAFPNVVLNGMISEQWKDMGWQGPNPSTDFRGCGFISLENLLFLAKNYPASFQRLLFKQGGNRATWEYPFAVAGINVSFMLIKMLDLFSEKPRCLPGMNFVRILGEDEAAFDVLYCVAFEMMDAQWLAMHASYMEFNEVLKVTRRQLER******************
Disordered Region (DISOPRED)
**ED*IYWRQKKDDEELEWSQNSSHVISQLAQCFTSAMVGPRAWIGGLFNR************HLTPPQEERLQRLQERLQTPFDESRPDHQAALRDLWRFAF************WKDMGWQGPNPSTDFRGCGFISLENLLFLAKNYPASFQRLL*********WEYPFAVAGINVSFMLIKMLDLFSEKPRCLPGMNFVRILGEDEAAFDVLYCVAFEMMDAQWLAMHASYMEFNEVLKVTRRQLERELSLEDIDRIQDLPAYN*
Disordered Region (DISEMBL)
VDEDEIYWRQKKDDEELEWSQNSSHVISQLAQCFTSAMVGPRAWIGGLFNRSANRRNERFHDYHLTPPQEERLQRLQERLQTPFDESRPDHQAALRDLWRFAFPNVVLNGMISEQWKDMGWQGPNPSTDFRGCGFISLENLLFLAKNYPASFQRLLFKQGGNRATWEYPFAVAGINVSFMLIKMLDLFSEKPRCLPGMNFVRILGEDEAAFDVLYCVAFEMMDAQWLAMHASYMEFNEVLKVTRRQLERELSLEDIDRIQDLPAYNL
Disordered Region (DISPRO)
*D*DEIYWRQKKDDEELEWSQNSSHVISQLAQCFTSAMVGPRAWIGGLFNRSANRRNERFHDYHLTPPQEERLQRLQERLQTPFDESRPDHQAALRDLWRFAFPNVVLNGMISEQWKDMGWQGPNPSTDFRGCGFISLENLLFLAKNYPASFQRLLFKQGGNRATWEYPFAVAGINVSFMLIKMLDLFSEKPRCLPGMNFVRILGEDEAAFDVLYCVAFEMMDAQWLAMHASYMEFNEVLKVTRRQLERELSLEDIDRIQDLPAYN*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
VDEDEIYWRQKKDDEELEWSQNSSHVISQLAQCFTSAMVGPRAWIGGLFNRSANRRNERFHDYHLTPPQEERLQRLQERLQTPFDESRPDHQAALRDLWRFAFPNVVLNGMISEQWKDMGWQGPNPSTDFRGCGFISLENLLFLAKNYPASFQRLLFKQGGNRATWEYPFAVAGINVSFMLIKMLDLFSEKPRCLPGMNFVRILGEDEAAFDVLYCVAFEMMDAQWLAMHASYMEFNEVLKVTRRQLERELSLEDIDRIQDLPAYNL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	267	2.2.26 [Sep-21-2011]
Q54YW1	977	ELMO domain-containing pr	yes	no	0.651	0.178	0.307	3e-24
Q54UP9	1267	Ankyrin repeat and ELMO d	no	no	0.629	0.132	0.323	7e-19
Q54RS7	618	ELMO domain-containing pr	no	no	0.655	0.283	0.295	2e-18
Q54VR8	284	ELMO domain-containing pr	no	no	0.651	0.612	0.278	6e-17
Q8BGF6	293	ELMO domain-containing pr	yes	no	0.528	0.481	0.340	5e-16
Q8IZ81	293	ELMO domain-containing pr	yes	no	0.378	0.344	0.359	7e-15
Q08DZ3	293	ELMO domain-containing pr	yes	no	0.385	0.351	0.352	1e-14
Q96BJ8	720	Engulfment and cell motil	no	no	0.700	0.259	0.259	1e-14
Q8BYZ7	720	Engulfment and cell motil	no	no	0.711	0.263	0.243	1e-14
Q499U2	720	Engulfment and cell motil	yes	no	0.711	0.263	0.243	2e-14

>sp|Q54YW1|ELMOA_DICDI ELMO domain-containing protein A OS=Dictyostelium discoideum GN=elmoA PE=1 SV=1

 Score =  112 bits (280), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 60/195 (30%), Positives = 94/195 (48%), Gaps = 21/195 (10%)

Query: 69  QEERLQRLQERLQTPFDESRPDHQAALRDLWRFAFPNVVLNGMISEQWKDMGWQGPNPST 128
           Q  R Q +  R    F++   +H A L  LW   +P V L   +SEQWK MG+QG +P T
Sbjct: 362 QRHRFQVITNRKNVTFNKESSEHDALLMKLWSLTYPGVKLESRVSEQWKQMGFQGTDPCT 421

Query: 129 DFRGCGFISLENLLFLAKNYPASFQRLLFKQGGNRATWEYPFAVAGINVSFMLIKMLDLF 188
           DFR  G   L+NL++ A+NY   F++++  Q  +R   EYP A AGI ++F L   +   
Sbjct: 422 DFRAMGIWGLDNLIYFAQNYNEKFRKIVNSQ-IDRKEREYPTATAGIVLTFELYNSIFKM 480

Query: 189 SEKPRCLP-------------------GMNFVRILGEDEAAFDVLYCVAFEMMDAQWLAM 229
              P   P                    + F  +      AF+ +YC  F+++D+ W  M
Sbjct: 481 G-TPNLNPYNSTTSNTTSNTTSTTNIDDLPFFPLFFSHPHAFEEVYCTTFQILDSTWDDM 539

Query: 230 HASYMEFNEVLKVTR 244
           + +YM F +++   +
Sbjct: 540 NGTYMHFQKIMSSVK 554

Functions as a negative regulator of actin polymerization. Modulates actin/myosin II at cortex actinomyosins to prevent excessive F-actin polymerization around the cell periphery, thereby maintaining proper cell shape during phagocytosis and chemotaxis.
Dictyostelium discoideum (taxid: 44689)

>sp|Q54UP9|ELMOD_DICDI Ankyrin repeat and ELMO domain-containing protein D OS=Dictyostelium discoideum GN=elmoD PE=4 SV=1

 Score = 94.4 bits (233), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 92/176 (52%), Gaps = 8/176 (4%)

Query: 69  QEERLQRLQERLQTPFDESRPDHQAALRDLWRFAFPNVVLNGMISEQWKDMGWQGPNPST 128
           Q  ++Q L    +TP+++  P HQ  L  LW   FPN V      E W+ +G+Q  +PS+
Sbjct: 286 QCHKIQGLIMDSKTPYNKDEPSHQRLLETLWSTLFPNQVFQ-RSHENWQIIGFQNKDPSS 344

Query: 129 DFRGCGFISLENLLFLAKNYPASFQRLLFKQGGNRATWEYPFAVAGINVSFML---IKML 185
           DFRG G   L++L++LA+N+   F   L  +    A + YP+A +GI V+  L   +K +
Sbjct: 345 DFRGMGLAGLKHLIYLAQNHKDMFMNPLINR-QPEANY-YPYATSGIQVTSFLVECVKPI 402

Query: 186 DLFSEKPRCLPGMNFVRILGEDEAAFDVLYCVAFEMMDAQWLAMHASYMEFNEVLK 241
           ++ +     +       IL E E A + +YCV  E+    W   +A+YM F +V +
Sbjct: 403 NISANHSDVIG--QIYPILFESENALNEIYCVLMEIFGIVWKDWNATYMIFQKVFQ 456

Dictyostelium discoideum (taxid: 44689)

>sp|Q54RS7|ELMOC_DICDI ELMO domain-containing protein C OS=Dictyostelium discoideum GN=elmoC PE=4 SV=1

 Score = 93.2 bits (230), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 99/193 (51%), Gaps = 18/193 (9%)

Query: 65  LTPPQEERLQRLQERLQTPFDESRPDHQAALRDLWRFAFPNVVLNGMISEQWKDMGWQGP 124
           +T  Q + ++ L ++  T ++ + PDH+  L+ LW   +P        S  WK  G+Q  
Sbjct: 357 VTAKQSQTIKILFQKKSTIYESTNPDHEEYLKHLWSLLYPEQEFQKK-SPLWKKFGFQSD 415

Query: 125 NPSTDFRGCGFISLENLLFLAKNYPASFQRLLFKQGGNRATWEYPFAVAGINVSFMLIKM 184
           +P+ DFRG G + L NL+ L +++    Q +L +        +YPFAVAGIN+S ++ ++
Sbjct: 416 DPTRDFRGMGIMGLLNLIHLVQHHNDWVQEILAQDR------DYPFAVAGINISNLIFEV 469

Query: 185 LDLFSEKPRCLPGMN----------FVRILGEDEAAFDVLYCVAFEMMDAQWLAMHASYM 234
             + SE     P  +             +   ++ AF+ LY + F ++D  W+ M+A+YM
Sbjct: 470 FQI-SEDSLQQPWYSSFWSSSYMAMLCSMSRHNDHAFEELYFLIFNLLDHLWIQMNATYM 528

Query: 235 EFNEVLKVTRRQL 247
            F  V+K  + QL
Sbjct: 529 MFPLVIKKLKSQL 541

Dictyostelium discoideum (taxid: 44689)

>sp|Q54VR8|ELMOB_DICDI ELMO domain-containing protein B OS=Dictyostelium discoideum GN=elmoB PE=4 SV=1

 Score = 88.2 bits (217), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 106/190 (55%), Gaps = 16/190 (8%)

Query: 74  QRLQERLQTPFDESRPDHQAALRDLWRFAFPNVVLNGMISEQWKDMGWQGPNPSTDFRGC 133
           + ++++ + P+D +  +H+A+L  LW    P+V  +  +S++W  +G+QG +P+TDFRG 
Sbjct: 108 KSIEKKQKIPYDNNNLEHEASLERLWEALLPDVRRSARLSKEWGTLGFQGMDPATDFRGM 167

Query: 134 GFISLENLLFLAKNYPASFQRLLFKQGGNRATWEYPFAVAGINVSFMLIKMLDLFSEKPR 193
           G + L+NL++ +  +    + +L K   ++    YPFA+ GIN++ +++ ++D    KP 
Sbjct: 168 GILGLDNLIYFSTQHSEDAREIL-KNSNSKCC--YPFAITGINITALVLNLID----KPH 220

Query: 194 CLPGMNFVRILGEDEAAFDVLYCVAFEMMDAQWLAMH-ASYMEFNEVLKVTRRQLERELS 252
               + F +  G     F+ LY + F   D  + +    S MEFN +    +++ E ++S
Sbjct: 221 F--KIYFFKN-GSTLTQFNELYSLVFISFDRFYQSKKPKSIMEFNTI----KKEFETKIS 273

Query: 253 LEDIDRIQDL 262
            ++ D +Q L
Sbjct: 274 -QNSDLVQLL 282

Dictyostelium discoideum (taxid: 44689)

>sp|Q8BGF6|ELMD2_MOUSE ELMO domain-containing protein 2 OS=Mus musculus GN=Elmod2 PE=2 SV=1

 Score = 85.1 bits (209), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 50/147 (34%), Positives = 74/147 (50%), Gaps = 6/147 (4%)

Query: 81  QTPFDESRPDHQAALRDLWRFAFPNVVLNGMISEQWKDMGWQGPNPSTDFRGCGFISLEN 140
           + P+D +   H+  L  LW    P   L   IS+QW D+G+QG +P TDFRG G + L N
Sbjct: 117 KKPYDSANAQHEKMLLKLWSLLMPTKKLTARISKQWADIGFQGDDPKTDFRGMGILGLIN 176

Query: 141 LLFLAKNYPASFQRLLFKQGGNRATWEYPFAVAGINVSFMLIKMLDLFSEKPRCLPGMNF 200
           L++ ++NY +   ++L +   N     Y +A+ GIN++ M   +L   SE  + L   NF
Sbjct: 177 LVYFSENYTSEAHQILSR--SNHPKLGYSYAIVGINLTEMAYSLLK--SEALK-LHLYNF 231

Query: 201 VRILGEDEAAFDVLYCVAFEMMDAQWL 227
           V  +   E  F   YC      D  WL
Sbjct: 232 VPGVPTME-HFHQFYCYLVYEFDKFWL 257

Acts as a GTPase-activating protein (GAP) toward guanine nucleotide exchange factors like ARL2, ARL3, ARF1 and ARF6, but not for GTPases outside the Arf family.

Mus musculus (taxid: 10090)

>sp|Q8IZ81|ELMD2_HUMAN ELMO domain-containing protein 2 OS=Homo sapiens GN=ELMOD2 PE=1 SV=1

 Score = 81.3 bits (199), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 58/103 (56%), Gaps = 2/103 (1%)

Query: 83  PFDESRPDHQAALRDLWRFAFPNVVLNGMISEQWKDMGWQGPNPSTDFRGCGFISLENLL 142
           P+D     H+  L  LW    P   LN  IS+QW ++G+QG +P TDFRG G + L NL+
Sbjct: 119 PYDSDNLQHEELLMKLWNLLMPTKKLNARISKQWAEIGFQGDDPKTDFRGMGILGLINLV 178

Query: 143 FLAKNYPASFQRLLFKQGGNRATWEYPFAVAGINVSFMLIKML 185
           + ++NY +   ++L +   N     Y +A+ GIN++ M   +L
Sbjct: 179 YFSENYTSEAHQILSR--SNHPKLGYSYAIVGINLTEMAYSLL 219

Acts as a GTPase-activating protein (GAP) toward guanine nucleotide exchange factors like ARL2, ARL3, ARF1 and ARF6, but not for GTPases outside the Arf family. Regulates IFN-related antiviral responses.

Homo sapiens (taxid: 9606)

>sp|Q08DZ3|ELMD2_BOVIN ELMO domain-containing protein 2 OS=Bos taurus GN=ELMOD2 PE=1 SV=1

 Score = 80.9 bits (198), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 58/105 (55%), Gaps = 2/105 (1%)

Query: 81  QTPFDESRPDHQAALRDLWRFAFPNVVLNGMISEQWKDMGWQGPNPSTDFRGCGFISLEN 140
           + P+D     H+  L  LW    P   L   IS+QW D+G+QG +P TDFRG G + L N
Sbjct: 117 KKPYDSDNLQHEKLLIKLWNLLMPTKKLKARISKQWADIGFQGDDPKTDFRGMGILGLIN 176

Query: 141 LLFLAKNYPASFQRLLFKQGGNRATWEYPFAVAGINVSFMLIKML 185
           L++ ++NY +   ++L +   N     Y +A+ GIN++ M   +L
Sbjct: 177 LVYFSENYTSEAHQILSR--SNHPKLGYSYAIVGINLTEMAYSLL 219

Acts as a GTPase-activating protein (GAP) toward guanine nucleotide exchange factors like ARL2, ARL3, ARF1 and ARF6, but not for GTPases outside the Arf family.

Bos taurus (taxid: 9913)

>sp|Q96BJ8|ELMO3_HUMAN Engulfment and cell motility protein 3 OS=Homo sapiens GN=ELMO3 PE=2 SV=3

 Score = 80.5 bits (197), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 106/208 (50%), Gaps = 21/208 (10%)

Query: 63  YHLTPPQEERLQRLQERLQTPFDESRPDHQAALRDLWRFAF------PNVVLNG-----M 111
           +HL   Q   L  L+ R++TP D    + +  L+ L + AF          L+      +
Sbjct: 280 HHLYVLQALMLGLLEPRMRTPLDPYSQEQREQLQVLRQAAFEVEGESSGAGLSADRRRSL 339

Query: 112 ISEQWKDMGWQGPNPSTDFRGC--GFISLENLLFLAKNYPASFQRLLFKQGGNRATWEYP 169
            + +++ +G+   NP+ D      G ++L+N+L+ ++N P+++ R + +        E P
Sbjct: 340 CAREFRKLGFSNSNPAQDLERVPPGLLALDNMLYFSRNAPSAYSRFVLENSSREDKHECP 399

Query: 170 FAVAGINVSFMLIKMLDL---FSEKPRCLPGMNFVRILGEDEAAFDVLYCVAFEMMDAQW 226
           FA   I ++ +L ++L +    SE  +    M F    G+D+ +F  L+CV  ++++  W
Sbjct: 400 FARGSIQLTVLLCELLRVGEPCSETAQDFSPMFF----GQDQ-SFHELFCVGIQLLNKTW 454

Query: 227 LAMHASYMEFNEVLKVTRRQLERELSLE 254
             M A+  +F++V++V R QL R L+L+
Sbjct: 455 KEMRATQEDFDKVMQVVREQLARTLALK 482

Involved in cytoskeletal rearrangements required for phagocytosis of apoptotic cells and cell motility. Acts in assocation with DOCK1 and CRK. Was initially proposed to be required in complex with DOCK1 to activate Rac Rho small GTPases. May enhance the guanine nucleotide exchange factor (GEF) activity of DOCK1.

Homo sapiens (taxid: 9606)

>sp|Q8BYZ7|ELMO3_MOUSE Engulfment and cell motility protein 3 OS=Mus musculus GN=Elmo3 PE=1 SV=2

 Score = 80.5 bits (197), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 106/205 (51%), Gaps = 15/205 (7%)

Query: 63  YHLTPPQEERLQRLQERLQTPFDESRPDHQAALRDLWRFAFP---NVVLNGMISE----- 114
           +HL   Q   L  L+ R++TP D    + +  L+ L + AF      +  G+ ++     
Sbjct: 280 HHLYVLQALTLGLLEPRMRTPLDPYSQEQRDQLQALRQAAFEPEGESLGTGLSADRRRSL 339

Query: 115 ---QWKDMGWQGPNPSTDFRGC--GFISLENLLFLAKNYPASFQRLLFKQGGNRATWEYP 169
              +++ +G+   NP+ D      G ++L+N+L+ +++ P+++ R + +        E P
Sbjct: 340 CVREFRKLGFSNSNPAQDLERVPPGLLALDNMLYFSRHAPSAYSRFVLENSSREDKHECP 399

Query: 170 FAVAGINVSFMLIKMLDLFSEKPRCLPGMNFVRILGEDEAAFDVLYCVAFEMMDAQWLAM 229
           FA + I ++ +L ++L +   +P      +F  +    + +F  L+CVA ++++  W  M
Sbjct: 400 FARSSIQLTALLCELLRV--GEPCSETAQDFSPMFFSQDHSFHELFCVAIQLLNKTWKEM 457

Query: 230 HASYMEFNEVLKVTRRQLERELSLE 254
            A+  +F++V++V R QL R L+L+
Sbjct: 458 RATQEDFDKVMQVVREQLARTLALK 482

Involved in cytoskeletal rearrangements required for phagocytosis of apoptotic cells and cell motility. Acts in assocation with DOCK1 and CRK. Was initially proposed to be required in complex with DOCK1 to activate Rac Rho small GTPases. May enhance the guanine nucleotide exchange factor (GEF) activity of DOCK1.

Mus musculus (taxid: 10090)

>sp|Q499U2|ELMO3_RAT Engulfment and cell motility protein 3 OS=Rattus norvegicus GN=Elmo3 PE=2 SV=1

 Score = 80.1 bits (196), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 105/205 (51%), Gaps = 15/205 (7%)

Query: 63  YHLTPPQEERLQRLQERLQTPFDESRPDHQAALRDLWRFAF-PNVVLNG----------M 111
           +HL   Q   L  L+ R++TP D    + +  L+ L + AF P+    G          +
Sbjct: 280 HHLYVLQALTLGLLEPRMRTPLDPYSQEQREQLQALRQAAFEPDGESLGTGLSADRRRSL 339

Query: 112 ISEQWKDMGWQGPNPSTDFRGC--GFISLENLLFLAKNYPASFQRLLFKQGGNRATWEYP 169
              +++ +G+   +P+ D      G ++L+N+L+ +++ P+++ R + +        E P
Sbjct: 340 CVREFRKLGFSNSSPAQDLERVPPGLLALDNMLYFSRHAPSAYSRFVLENSSREDKHECP 399

Query: 170 FAVAGINVSFMLIKMLDLFSEKPRCLPGMNFVRILGEDEAAFDVLYCVAFEMMDAQWLAM 229
           FA + I ++ +L ++L +   +P      +F  +    + +F  L+CVA ++++  W  M
Sbjct: 400 FARSSIQLTVLLCELLHV--GEPCSETAQDFSPMFFSQDHSFHELFCVAIQLLNKTWKEM 457

Query: 230 HASYMEFNEVLKVTRRQLERELSLE 254
            A+  +F++V++V R QL R L+L+
Sbjct: 458 RATQEDFDKVMQVVREQLARTLALK 482

Involved in cytoskeletal rearrangements required for phagocytosis of apoptotic cells and cell motility. Acts in assocation with DOCK1 and CRK. Was initially proposed to be required in complex with DOCK1 to activate Rac Rho small GTPases. May enhance the guanine nucleotide exchange factor (GEF) activity of DOCK1.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	267
356515196	293	PREDICTED: ELMO domain-containing protei	0.992	0.904	0.764	1e-122
449475968	340	PREDICTED: ELMO domain-containing protei	1.0	0.785	0.782	1e-121
255553831	242	conserved hypothetical protein [Ricinus	0.880	0.971	0.753	1e-107
224124564	239	predicted protein [Populus trichocarpa]	0.872	0.974	0.776	1e-106
359485539	235	PREDICTED: ELMO domain-containing protei	0.861	0.978	0.788	1e-106
356542905	231	PREDICTED: ELMO domain-containing protei	0.861	0.995	0.769	1e-105
449444346	233	PREDICTED: ELMO domain-containing protei	0.861	0.987	0.791	1e-104
388514281	233	unknown [Lotus japonicus]	0.861	0.987	0.743	1e-102
297848580	265	predicted protein [Arabidopsis lyrata su	0.966	0.973	0.675	1e-100
15218859	265	ELMO/CED-12 family protein [Arabidopsis	0.966	0.973	0.675	1e-100

>gi|356515196|ref|XP_003526287.1| PREDICTED: ELMO domain-containing protein A-like [Glycine max]

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 204/267 (76%), Positives = 239/267 (89%), Gaps = 2/267 (0%)

Query: 1   VDEDEIYWRQKKDDEELEWSQNSSHVISQLAQCFTSAMVGPRAWIGGLFNRSANRRNERF 60
           VDEDEIYWR +K+DEELEW+ NS+H+ISQL Q  ++AMVG R+WIGGLFNR+  +RN++F
Sbjct: 28  VDEDEIYWRHRKEDEELEWTPNSTHLISQLTQ--SNAMVGSRSWIGGLFNRTTTKRNDKF 85

Query: 61  HDYHLTPPQEERLQRLQERLQTPFDESRPDHQAALRDLWRFAFPNVVLNGMISEQWKDMG 120
            DY L P +EERLQRLQERLQ P+DE+RPDHQ +LR LW  +FPNV L G+IS+QWKDMG
Sbjct: 86  VDYPLIPIEEERLQRLQERLQVPYDETRPDHQESLRALWHCSFPNVSLEGLISDQWKDMG 145

Query: 121 WQGPNPSTDFRGCGFISLENLLFLAKNYPASFQRLLFKQGGNRATWEYPFAVAGINVSFM 180
           WQGPNPSTDFRGCGFISLENLLF A+ YPASF +LL K+ GNRATWEYPFAVAGIN+SFM
Sbjct: 146 WQGPNPSTDFRGCGFISLENLLFFARKYPASFHKLLLKKDGNRATWEYPFAVAGINISFM 205

Query: 181 LIKMLDLFSEKPRCLPGMNFVRILGEDEAAFDVLYCVAFEMMDAQWLAMHASYMEFNEVL 240
           LI+MLDL SEKPRC+PGMNFV++LGE+E AFDVLYC+AFEMMDAQWLA+HASYM+FN+VL
Sbjct: 206 LIQMLDLCSEKPRCIPGMNFVKLLGENEEAFDVLYCIAFEMMDAQWLALHASYMDFNDVL 265

Query: 241 KVTRRQLERELSLEDIDRIQDLPAYNL 267
           + TR QLERELSLEDI++IQDLPAYNL
Sbjct: 266 QATRMQLERELSLEDINKIQDLPAYNL 292

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449475968|ref|XP_004154602.1| PREDICTED: ELMO domain-containing protein A-like [Cucumis sativus]

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 209/267 (78%), Positives = 239/267 (89%)

Query: 1   VDEDEIYWRQKKDDEELEWSQNSSHVISQLAQCFTSAMVGPRAWIGGLFNRSANRRNERF 60
           VDEDEIYWR+++ DEELEWS +S++VI QLAQCFT+AMVGPR+WI GLFNRS NRRN++F
Sbjct: 71  VDEDEIYWRRRRGDEELEWSHSSTYVILQLAQCFTNAMVGPRSWIVGLFNRSGNRRNDKF 130

Query: 61  HDYHLTPPQEERLQRLQERLQTPFDESRPDHQAALRDLWRFAFPNVVLNGMISEQWKDMG 120
             Y L+P QEERLQRLQ+R+  PFDE+  DHQ ALR LW  A+PN+ L GMISEQWK+MG
Sbjct: 131 LQYPLSPLQEERLQRLQDRMHIPFDETCVDHQEALRALWNAAYPNIELKGMISEQWKEMG 190

Query: 121 WQGPNPSTDFRGCGFISLENLLFLAKNYPASFQRLLFKQGGNRATWEYPFAVAGINVSFM 180
           WQGPNPSTDFRGCGFISLENLL+ ++ +PASF+RLL K+ GNRATWEYPFAVAGINVSFM
Sbjct: 191 WQGPNPSTDFRGCGFISLENLLYFSRMFPASFRRLLLKEDGNRATWEYPFAVAGINVSFM 250

Query: 181 LIKMLDLFSEKPRCLPGMNFVRILGEDEAAFDVLYCVAFEMMDAQWLAMHASYMEFNEVL 240
           LI+MLDL +EKPR LPG+NFVR+LGE+E AFDVLYCVAFEMMDAQWLAMHASYMEFNEVL
Sbjct: 251 LIQMLDLNAEKPRNLPGLNFVRLLGENEEAFDVLYCVAFEMMDAQWLAMHASYMEFNEVL 310

Query: 241 KVTRRQLERELSLEDIDRIQDLPAYNL 267
           +VTR QLERELSLED+ RIQDLPAYNL
Sbjct: 311 QVTRTQLERELSLEDVHRIQDLPAYNL 337

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553831|ref|XP_002517956.1| conserved hypothetical protein [Ricinus communis] gi|223542938|gb|EEF44474.1| conserved hypothetical protein [Ricinus communis]

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 177/235 (75%), Positives = 210/235 (89%)

Query: 33  CFTSAMVGPRAWIGGLFNRSANRRNERFHDYHLTPPQEERLQRLQERLQTPFDESRPDHQ 92
              +AM+GPRAWIGG F+R+ N+RNE+  D+ LTP QE+RL++LQ+RLQ PFDE+RPDH+
Sbjct: 5   TLANAMIGPRAWIGGFFSRATNKRNEKLLDFTLTPLQEQRLKKLQDRLQVPFDETRPDHK 64

Query: 93  AALRDLWRFAFPNVVLNGMISEQWKDMGWQGPNPSTDFRGCGFISLENLLFLAKNYPASF 152
            ALR LW  AFP++ L GMISEQWK+MGWQGPNPSTDFRGCG+ISLENLLF A+ YP SF
Sbjct: 65  DALRSLWNAAFPDIALTGMISEQWKEMGWQGPNPSTDFRGCGYISLENLLFFARTYPVSF 124

Query: 153 QRLLFKQGGNRATWEYPFAVAGINVSFMLIKMLDLFSEKPRCLPGMNFVRILGEDEAAFD 212
           +RLLFKQGG RATWEYPFAVAGINVSFMLI+ML+L SEKP+ LPG+NF+++LGED+AAFD
Sbjct: 125 RRLLFKQGGKRATWEYPFAVAGINVSFMLIQMLELHSEKPKGLPGINFIKLLGEDDAAFD 184

Query: 213 VLYCVAFEMMDAQWLAMHASYMEFNEVLKVTRRQLERELSLEDIDRIQDLPAYNL 267
           +L+C+AFE+MDAQWLAMHASYMEFNEVLKVTR QLERELSLEDI  ++DLPAYNL
Sbjct: 185 ILFCLAFELMDAQWLAMHASYMEFNEVLKVTRTQLERELSLEDIHGVKDLPAYNL 239

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124564|ref|XP_002319363.1| predicted protein [Populus trichocarpa] gi|222857739|gb|EEE95286.1| predicted protein [Populus trichocarpa]

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 181/233 (77%), Positives = 207/233 (88%)

Query: 35  TSAMVGPRAWIGGLFNRSANRRNERFHDYHLTPPQEERLQRLQERLQTPFDESRPDHQAA 94
            +AMVGPR+WI GLF RS  +RN++  D+ LTP  E+RLQ+LQER++TPFDE+RPDHQ A
Sbjct: 4   ANAMVGPRSWIAGLFTRSPYKRNDKVLDFCLTPHLEQRLQKLQERMRTPFDETRPDHQEA 63

Query: 95  LRDLWRFAFPNVVLNGMISEQWKDMGWQGPNPSTDFRGCGFISLENLLFLAKNYPASFQR 154
           LR LW  AFP++ L G+ISEQWKDMGWQG NPSTDFRGCGFISLENLLF ++ YPASF R
Sbjct: 64  LRSLWNAAFPDIPLKGLISEQWKDMGWQGANPSTDFRGCGFISLENLLFFSRTYPASFHR 123

Query: 155 LLFKQGGNRATWEYPFAVAGINVSFMLIKMLDLFSEKPRCLPGMNFVRILGEDEAAFDVL 214
           LLFKQGG RATWEYPFAVAGINVSFMLI+MLDL SEKPRCLPG+ FV++LGEDE+AFDVL
Sbjct: 124 LLFKQGGQRATWEYPFAVAGINVSFMLIQMLDLRSEKPRCLPGVTFVKLLGEDESAFDVL 183

Query: 215 YCVAFEMMDAQWLAMHASYMEFNEVLKVTRRQLERELSLEDIDRIQDLPAYNL 267
           +C+AFEMMDAQWLAM ASYMEFNEVL+VTR QLERELSLED+ RI+DLPAYNL
Sbjct: 184 FCIAFEMMDAQWLAMRASYMEFNEVLQVTRTQLERELSLEDVHRIKDLPAYNL 236

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485539|ref|XP_002272217.2| PREDICTED: ELMO domain-containing protein A-like [Vitis vinifera] gi|297739246|emb|CBI28897.3| unnamed protein product [Vitis vinifera]

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 183/232 (78%), Positives = 206/232 (88%), Gaps = 2/232 (0%)

Query: 38  MVGPRAWIGGLFNRSANRR--NERFHDYHLTPPQEERLQRLQERLQTPFDESRPDHQAAL 95
           MVG R+W+ G FNR  N+R  N+++ DY L+P QE+RLQRLQ+RLQ PFDE+R DHQ AL
Sbjct: 1   MVGSRSWVIGFFNRYGNKRSGNDKYLDYPLSPLQEQRLQRLQDRLQVPFDETRTDHQEAL 60

Query: 96  RDLWRFAFPNVVLNGMISEQWKDMGWQGPNPSTDFRGCGFISLENLLFLAKNYPASFQRL 155
           R LW  AFPN+VL G+ISEQWKDMGWQGPNPSTDFRGCGF+SLENLLF A+ YPASF RL
Sbjct: 61  RALWHAAFPNIVLRGLISEQWKDMGWQGPNPSTDFRGCGFVSLENLLFFARTYPASFHRL 120

Query: 156 LFKQGGNRATWEYPFAVAGINVSFMLIKMLDLFSEKPRCLPGMNFVRILGEDEAAFDVLY 215
           LFKQ G+RATWEYPFAVAGINVSFMLI+MLDL S KP+CLPG+NFV++LGEDE AFDVLY
Sbjct: 121 LFKQDGDRATWEYPFAVAGINVSFMLIQMLDLCSAKPKCLPGINFVKLLGEDEEAFDVLY 180

Query: 216 CVAFEMMDAQWLAMHASYMEFNEVLKVTRRQLERELSLEDIDRIQDLPAYNL 267
           C+AFEMMDAQWLAMHASYMEFNEVL+VTR QLERELSLED+ RIQDLPAYNL
Sbjct: 181 CIAFEMMDAQWLAMHASYMEFNEVLQVTRTQLERELSLEDVHRIQDLPAYNL 232

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542905|ref|XP_003539905.1| PREDICTED: ELMO domain-containing protein A-like [Glycine max]

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 177/230 (76%), Positives = 206/230 (89%)

Query: 38  MVGPRAWIGGLFNRSANRRNERFHDYHLTPPQEERLQRLQERLQTPFDESRPDHQAALRD 97
           MVG R+WIGGLF+R+  +R+++F DY L+P +EERLQRLQERLQ P+DE+RPDHQ +LR 
Sbjct: 1   MVGSRSWIGGLFHRTTTKRDDKFIDYPLSPIEEERLQRLQERLQVPYDETRPDHQESLRA 60

Query: 98  LWRFAFPNVVLNGMISEQWKDMGWQGPNPSTDFRGCGFISLENLLFLAKNYPASFQRLLF 157
           LW  +FPNV L G+IS+QWKDMGWQGPNPSTDFRGCGFISLENLLF A+ YP SF +LL 
Sbjct: 61  LWHCSFPNVSLEGLISDQWKDMGWQGPNPSTDFRGCGFISLENLLFFARKYPESFHKLLL 120

Query: 158 KQGGNRATWEYPFAVAGINVSFMLIKMLDLFSEKPRCLPGMNFVRILGEDEAAFDVLYCV 217
           K+ G RATWEYPFAVAGIN+SFMLI+MLDL SEKPRCLPGMNFV++LGE+E AFDVLYC+
Sbjct: 121 KKDGKRATWEYPFAVAGINISFMLIQMLDLCSEKPRCLPGMNFVKLLGENEEAFDVLYCI 180

Query: 218 AFEMMDAQWLAMHASYMEFNEVLKVTRRQLERELSLEDIDRIQDLPAYNL 267
           AFEMMDAQWLAMHASYM+FN+VL+ TR QLERELSLEDI++IQDLPAYNL
Sbjct: 181 AFEMMDAQWLAMHASYMDFNDVLQATRMQLERELSLEDINKIQDLPAYNL 230

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444346|ref|XP_004139936.1| PREDICTED: ELMO domain-containing protein A-like [Cucumis sativus]

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 182/230 (79%), Positives = 205/230 (89%)

Query: 38  MVGPRAWIGGLFNRSANRRNERFHDYHLTPPQEERLQRLQERLQTPFDESRPDHQAALRD 97
           MVGPR+WI GLFNRS NRRN++F  Y L+P QEERLQRLQ+R+  PFDE+  DHQ ALR 
Sbjct: 1   MVGPRSWIVGLFNRSGNRRNDKFLQYPLSPLQEERLQRLQDRMHIPFDETCVDHQEALRA 60

Query: 98  LWRFAFPNVVLNGMISEQWKDMGWQGPNPSTDFRGCGFISLENLLFLAKNYPASFQRLLF 157
           LW  A+PN+ L GMISEQWK+MGWQGPNPSTDFRGCGFISLENLL+ ++ +PASF+RLL 
Sbjct: 61  LWNAAYPNIELKGMISEQWKEMGWQGPNPSTDFRGCGFISLENLLYFSRMFPASFRRLLL 120

Query: 158 KQGGNRATWEYPFAVAGINVSFMLIKMLDLFSEKPRCLPGMNFVRILGEDEAAFDVLYCV 217
           K+ GNRATWEYPFAVAGINVSFMLI+MLDL +EKPR LPG+NFVR+LGE+E AFDVLYCV
Sbjct: 121 KEDGNRATWEYPFAVAGINVSFMLIQMLDLNAEKPRNLPGLNFVRLLGENEEAFDVLYCV 180

Query: 218 AFEMMDAQWLAMHASYMEFNEVLKVTRRQLERELSLEDIDRIQDLPAYNL 267
           AFEMMDAQWLAMHASYMEFNEVL+VTR QLERELSLED+ RIQDLPAYNL
Sbjct: 181 AFEMMDAQWLAMHASYMEFNEVLQVTRTQLERELSLEDVHRIQDLPAYNL 230

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388514281|gb|AFK45202.1| unknown [Lotus japonicus]

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 171/230 (74%), Positives = 203/230 (88%)

Query: 38  MVGPRAWIGGLFNRSANRRNERFHDYHLTPPQEERLQRLQERLQTPFDESRPDHQAALRD 97
           MVGPR+WIGG F+R++ +R+E+  DY L+  +EERL RLQERLQ P+DE+  DHQ +LR 
Sbjct: 1   MVGPRSWIGGFFHRTSTKRSEKIADYPLSSIEEERLHRLQERLQVPYDETCLDHQESLRA 60

Query: 98  LWRFAFPNVVLNGMISEQWKDMGWQGPNPSTDFRGCGFISLENLLFLAKNYPASFQRLLF 157
           LW  AF NV L  +IS+QWKDMGWQGPNPSTDFRGCG+ISLENLL+ A+ YPASF RLL 
Sbjct: 61  LWHCAFLNVSLESLISDQWKDMGWQGPNPSTDFRGCGYISLENLLYFARKYPASFHRLLL 120

Query: 158 KQGGNRATWEYPFAVAGINVSFMLIKMLDLFSEKPRCLPGMNFVRILGEDEAAFDVLYCV 217
           K+ G+RATWEYPFAVAGIN+SFMLI+MLDL+SEKPRCLPGMNFV++LGE+E AFD+LYC+
Sbjct: 121 KKDGDRATWEYPFAVAGINISFMLIQMLDLYSEKPRCLPGMNFVKLLGENEEAFDILYCI 180

Query: 218 AFEMMDAQWLAMHASYMEFNEVLKVTRRQLERELSLEDIDRIQDLPAYNL 267
           A+EMMDAQWLAMHASYM+FNEVL+ TR QLERELSLEDI++IQDLPAYNL
Sbjct: 181 AYEMMDAQWLAMHASYMDFNEVLQTTRMQLERELSLEDINKIQDLPAYNL 230

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297848580|ref|XP_002892171.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297338013|gb|EFH68430.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  369 bits (947), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 177/262 (67%), Positives = 214/262 (81%), Gaps = 4/262 (1%)

Query: 9   RQKKDDEELEWSQNSSHVISQLAQCFTSA--MVGPRAWIGGLFNRSANRRNERFHDYHLT 66
           ++ K +++   S++ S  +  L +   +A  MVG R+WIGGLF RS NRR E+  +Y L+
Sbjct: 2   KRGKGEKKATKSRDGSGQVVPLTEPVVTATGMVGTRSWIGGLFTRS-NRRQEKSVEYTLS 60

Query: 67  PPQEERLQRLQERLQTPFDESRPDHQAALRDLWRFAFPNVVLNGMISEQWKDMGWQGPNP 126
           P QEERLQRLQ+R+  PFDE+RPDHQ +L+ LW  AFPNV L G+++EQWK+MGWQGPNP
Sbjct: 61  PLQEERLQRLQDRMVVPFDETRPDHQESLKALWNVAFPNVNLTGLVTEQWKEMGWQGPNP 120

Query: 127 STDFRGCGFISLENLLFLAKNYPASFQRLLFKQGGNRATWEYPFAVAGINVSFMLIKMLD 186
           STDFRGCGFI+LENLLF A+ YP  F+RLL KQ G+RA WEYPFAVAGIN+SFMLI+MLD
Sbjct: 121 STDFRGCGFIALENLLFSARTYPVCFRRLLLKQRGDRAKWEYPFAVAGINISFMLIQMLD 180

Query: 187 LFSE-KPRCLPGMNFVRILGEDEAAFDVLYCVAFEMMDAQWLAMHASYMEFNEVLKVTRR 245
           L +  KP+CLPGMNF+++L EDE AFDVLYC+AF MMDAQWLAMHASYMEFNEVL+ TR 
Sbjct: 181 LQNNPKPKCLPGMNFLKLLEEDEKAFDVLYCIAFAMMDAQWLAMHASYMEFNEVLQATRN 240

Query: 246 QLERELSLEDIDRIQDLPAYNL 267
           QLERELSL+DI RIQDLPAYNL
Sbjct: 241 QLERELSLDDIHRIQDLPAYNL 262

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15218859|ref|NP_171859.1| ELMO/CED-12 family protein [Arabidopsis thaliana] gi|124300970|gb|ABN04737.1| At1g03620 [Arabidopsis thaliana] gi|332189469|gb|AEE27590.1| ELMO/CED-12 family protein [Arabidopsis thaliana]

 Score =  369 bits (946), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 177/262 (67%), Positives = 214/262 (81%), Gaps = 4/262 (1%)

Query: 9   RQKKDDEELEWSQNSSHVISQLAQCFTSA--MVGPRAWIGGLFNRSANRRNERFHDYHLT 66
           ++ K +++   S++ S  +  L +   +A  MVG R+WIGGLF RS NRR ++  DY L+
Sbjct: 2   KRGKGEKKATKSRDGSGQVVPLTEPVVTATGMVGTRSWIGGLFTRS-NRRQDKAVDYTLS 60

Query: 67  PPQEERLQRLQERLQTPFDESRPDHQAALRDLWRFAFPNVVLNGMISEQWKDMGWQGPNP 126
           P QEERLQRLQ+R+  PFDE+RPDHQ +L+ LW  AFPNV L G+++EQWK+MGWQGPNP
Sbjct: 61  PLQEERLQRLQDRMVVPFDETRPDHQESLKALWNVAFPNVHLTGLVTEQWKEMGWQGPNP 120

Query: 127 STDFRGCGFISLENLLFLAKNYPASFQRLLFKQGGNRATWEYPFAVAGINVSFMLIKMLD 186
           STDFRGCGFI+LENLLF A+ YP  F+RLL KQ G+RA WEYPFAVAGIN+SFMLI+MLD
Sbjct: 121 STDFRGCGFIALENLLFSARTYPVCFRRLLLKQRGDRAKWEYPFAVAGINISFMLIQMLD 180

Query: 187 LFSE-KPRCLPGMNFVRILGEDEAAFDVLYCVAFEMMDAQWLAMHASYMEFNEVLKVTRR 245
           L +  KP+CLPGMNF+++L EDE AFDVLYC+AF MMDAQWLAMHASYMEFNEVL+ TR 
Sbjct: 181 LQNNPKPKCLPGMNFLKLLEEDERAFDVLYCIAFAMMDAQWLAMHASYMEFNEVLQATRN 240

Query: 246 QLERELSLEDIDRIQDLPAYNL 267
           QLERELSL+DI RIQDLPAYNL
Sbjct: 241 QLERELSLDDIHRIQDLPAYNL 262

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	267
TAIR|locus:2020753	265	AT1G03620 "AT1G03620" [Arabido	0.966	0.973	0.637	1.8e-87
TAIR|locus:2042456	266	AT2G44770 "AT2G44770" [Arabido	0.865	0.868	0.566	1.3e-66
TAIR|locus:2096389	323	AT3G03610 "AT3G03610" [Arabido	0.977	0.808	0.522	1.7e-66
TAIR|locus:2081947	266	AT3G60260 "AT3G60260" [Arabido	0.861	0.864	0.543	5.2e-65
TAIR|locus:2019544	281	AT1G67400 [Arabidopsis thalian	0.808	0.768	0.561	7.9e-62
TAIR|locus:2102276	213	AT3G43400 "AT3G43400" [Arabido	0.486	0.610	0.611	2.6e-40
DICTYBASE|DDB_G0278051	977	elmoA "engulfment and cell mot	0.363	0.099	0.428	4.5e-22
DICTYBASE|DDB_G0280943	1267	elmoD "engulfment and cell mot	0.580	0.122	0.343	1.6e-18
DICTYBASE|DDB_G0280179	284	elmoB "engulfment and cell mot	0.610	0.573	0.290	1.7e-18
FB|FBgn0037473	316	CG10068 [Drosophila melanogast	0.565	0.477	0.318	4.6e-18

TAIR|locus:2020753 AT1G03620 "AT1G03620" [Arabidopsis thaliana (taxid:3702)]

 Score = 874 (312.7 bits), Expect = 1.8e-87, P = 1.8e-87
 Identities = 167/262 (63%), Positives = 202/262 (77%)

Query:     9 RQKKDDEELEWSQNSSHVISQLAQCFTSA--MVGPRAWIGGLFNRSANRRNERFHDYHLT 66
             ++ K +++   S++ S  +  L +   +A  MVG R+WIGGLF RS NRR ++  DY L+
Sbjct:     2 KRGKGEKKATKSRDGSGQVVPLTEPVVTATGMVGTRSWIGGLFTRS-NRRQDKAVDYTLS 60

Query:    67 PPXXXXXXXXXXXXXTPFDESRPDHQAALRDLWRFAFPNVVLNGMISEQWKDMGWQGPNP 126
             P               PFDE+RPDHQ +L+ LW  AFPNV L G+++EQWK+MGWQGPNP
Sbjct:    61 PLQEERLQRLQDRMVVPFDETRPDHQESLKALWNVAFPNVHLTGLVTEQWKEMGWQGPNP 120

Query:   127 STDFRGCGFISLENLLFLAKNYPASFQRLLFKQGGNRATWEYPFAVAGINVSFMLIKMLD 186
             STDFRGCGFI+LENLLF A+ YP  F+RLL KQ G+RA WEYPFAVAGIN+SFMLI+MLD
Sbjct:   121 STDFRGCGFIALENLLFSARTYPVCFRRLLLKQRGDRAKWEYPFAVAGINISFMLIQMLD 180

Query:   187 LFSE-KPRCLPGMNFVRILGEDEAAFDVLYCVAFEMMDAQWLAMHASYMEFNEVLKVTRR 245
             L +  KP+CLPGMNF+++L EDE AFDVLYC+AF MMDAQWLAMHASYMEFNEVL+ TR 
Sbjct:   181 LQNNPKPKCLPGMNFLKLLEEDERAFDVLYCIAFAMMDAQWLAMHASYMEFNEVLQATRN 240

Query:   246 QLERELSLEDIDRIQDLPAYNL 267
             QLERELSL+DI RIQDLPAYNL
Sbjct:   241 QLERELSLDDIHRIQDLPAYNL 262

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006909 "phagocytosis" evidence=IEA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR|locus:2042456 AT2G44770 "AT2G44770" [Arabidopsis thaliana (taxid:3702)]

 Score = 677 (243.4 bits), Expect = 1.3e-66, P = 1.3e-66
 Identities = 132/233 (56%), Positives = 169/233 (72%)

Query:    37 AMVGPRAWIG-GLFNRSANRRNERFHD-YHLTPPXXXXXXXXXXXXXTPFDESRPDHQAA 94
             A+ G  AW+G GL    A RR+   +  + LTP                +D + P HQ A
Sbjct:    31 AVPGSAAWLGRGLSCVCAQRRDSDANSTFDLTPAQEECLQSLQNRIDVAYDSTIPLHQEA 90

Query:    95 LRDLWRFAFPNVVLNGMISEQWKDMGWQGPNPSTDFRGCGFISLENLLFLAKNYPASFQR 154
             LR+LW+ +FP   L+G+ISEQWK+MGWQG +PSTDFRG GFISLENLL+ A+N+  SFQ 
Sbjct:    91 LRELWKLSFPEEELHGLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYFARNFQKSFQD 150

Query:   155 LLFKQGGNRATWEYPFAVAGINVSFMLIKMLDLFSEKPRCLPGMNFVRILGEDEAAFDVL 214
             LL KQ G+R+ WEYPFAVAGIN++FMLI+MLDL + KPR + G  F++ L E+E+AFD+L
Sbjct:   151 LLRKQVGDRSVWEYPFAVAGINLTFMLIQMLDLEAVKPRTIVGATFLKFLSENESAFDLL 210

Query:   215 YCVAFEMMDAQWLAMHASYMEFNEVLKVTRRQLERELSLEDIDRIQDLPAYNL 267
             YC+AF++MD QWL+M ASYMEFN V+K TRRQLEREL LEDI  ++DLP+Y L
Sbjct:   211 YCIAFKLMDQQWLSMRASYMEFNTVMKSTRRQLERELMLEDIMHLEDLPSYAL 263

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006909 "phagocytosis" evidence=IEA

TAIR|locus:2096389 AT3G03610 "AT3G03610" [Arabidopsis thaliana (taxid:3702)]

 Score = 676 (243.0 bits), Expect = 1.7e-66, P = 1.7e-66
 Identities = 140/268 (52%), Positives = 172/268 (64%)

Query:     5 EIYWRQKKDDEELEWSQNSSHVISQLAQCFTSAMVGPRAWIGGLFNRSANRRNERFHDYH 64
             E  W +++  +++ W+   S +I+Q AQ     + G  + +G     S     +      
Sbjct:    55 EDIWEEERKRQQVHWTLIFSQLIAQWAQWIAKIVFGSGSLVGRFL--SLPTFGQIGTGGR 112

Query:    65 LTPPXXXXXXXXXXXXXT-----PFDESRPDHQAALRDLWRFAFPNVVLNGMISEQWKDM 119
             L PP                   PFD SR +HQ ALR LWR A+P   L  + SE WK+M
Sbjct:   113 LLPPPLSMLQEERLRNIKRRIEIPFDGSRMEHQDALRQLWRLAYPQRELPPLKSELWKEM 172

Query:   120 GWQGPNPSTDFRGCGFISLENLLFLAKNYPASFQRLLFKQGGNRATWEYPFAVAGINVSF 179
             GWQG +PSTDFRG G+ISLENL+F AK YP SFQRLL KQ G RA WEYPFAVAGIN+SF
Sbjct:   173 GWQGTDPSTDFRGGGYISLENLIFFAKTYPESFQRLLHKQDGTRAEWEYPFAVAGINISF 232

Query:   180 MLIKMLDLFSEKPRCLPGMNFVRILGEDEAAFDVLYCVAFEMMDAQWLAMHASYMEFNEV 239
             ML +MLDL S KP  + G+ F+  L EDE AFD LYC+AF+MMDAQWLA  ASYMEFN+V
Sbjct:   233 MLAQMLDLQSGKPSTIAGIRFLGFLEEDEMAFDNLYCIAFQMMDAQWLARRASYMEFNDV 292

Query:   240 LKVTRRQLERELSLEDIDRIQDLPAYNL 267
             LK TR QLEREL+L+D+  I DLPA+NL
Sbjct:   293 LKSTRAQLERELALDDVSSITDLPAFNL 320

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006909 "phagocytosis" evidence=IEA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0042631 "cellular response to water deprivation" evidence=RCA

TAIR|locus:2081947 AT3G60260 "AT3G60260" [Arabidopsis thaliana (taxid:3702)]

 Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
 Identities = 126/232 (54%), Positives = 165/232 (71%)

Query:    38 MVGPRAWIG-GLFNRSANRRN-ERFHDYHLTPPXXXXXXXXXXXXXTPFDESRPDHQAAL 95
             + G  AW+G GL       R+ +    + LTP                +D S P HQ AL
Sbjct:    32 VAGSAAWLGRGLSCVCVQGRDGDPRPSFDLTPAQEECLQRLQSRIDVAYDSSIPQHQEAL 91

Query:    96 RDLWRFAFPNVVLNGMISEQWKDMGWQGPNPSTDFRGCGFISLENLLFLAKNYPASFQRL 155
             +DLW+ AFP   L+G++S+QWK+MGWQG +PSTDFRG GFISLENLL+ A+ +P SF  L
Sbjct:    92 KDLWKLAFPEEELHGIVSDQWKEMGWQGKDPSTDFRGGGFISLENLLYFARKFPKSFHGL 151

Query:   156 LFKQGGNRATWEYPFAVAGINVSFMLIKMLDLFSEKPRCLPGMNFVRILGEDEAAFDVLY 215
             L KQ G+R+ WEYPFAVAGIN++FMLI+MLDL + KPR + G  F+R L  +E+AFD+LY
Sbjct:   152 LRKQVGDRSVWEYPFAVAGINITFMLIQMLDLEAVKPRSIVGETFLRFLSVNESAFDLLY 211

Query:   216 CVAFEMMDAQWLAMHASYMEFNEVLKVTRRQLERELSLEDIDRIQDLPAYNL 267
             C+AF++MD QWL+M ASYMEFN V+K TRRQLERE+ +EDI  ++DLP+Y+L
Sbjct:   212 CIAFKLMDQQWLSMRASYMEFNTVMKSTRRQLEREIMIEDITSLEDLPSYSL 263

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006909 "phagocytosis" evidence=IEA

TAIR|locus:2019544 AT1G67400 [Arabidopsis thaliana (taxid:3702)]

 Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
 Identities = 123/219 (56%), Positives = 157/219 (71%)

Query:    49 FNRSANRRNERFHDYHLTPPXXXXXXXXXXXXXTPFDESRPDHQAALRDLWRFAFPNVVL 108
             FNR   R  ER    +LTP                +D SRPDHQ ALR LW   +P+  L
Sbjct:    64 FNRK--RAYERICS-NLTPLQEERLKRLRKRMKNYYDASRPDHQDALRALWSATYPDEKL 120

Query:   109 NGMISEQWKDMGWQGPNPSTDFRGCGFISLENLLFLAKNYPASFQRLLFKQGGNRATWEY 168
               +IS+QWK+MGWQG +PSTDFRG GFISLENLLF AK +  SFQRLL KQGG RA WEY
Sbjct:   121 QDLISDQWKNMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLNKQGGKRAAWEY 180

Query:   169 PFAVAGINVSFMLIKMLDLFSEKPRCLPGMNFVRILGEDEAAFDVLYCVAFEMMDAQWLA 228
             PFAVAG+N++FM+++MLDL + KPR    + F+++L E E AFD+LYCVAF +MD QWL 
Sbjct:   181 PFAVAGVNITFMIMQMLDLEASKPRSFIRLVFLQMLSESEWAFDLLYCVAFVVMDKQWLD 240

Query:   229 MHASYMEFNEVLKVTRRQLERELSLEDIDRIQDLPAYNL 267
              +A+YMEFN+VL+ TR QLEREL ++D+ RI+D+P+++L
Sbjct:   241 KNATYMEFNDVLRCTRGQLERELMMDDVFRIEDMPSFSL 279

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006909 "phagocytosis" evidence=IEA

TAIR|locus:2102276 AT3G43400 "AT3G43400" [Arabidopsis thaliana (taxid:3702)]

 Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
 Identities = 82/134 (61%), Positives = 104/134 (77%)

Query:   108 LNGMISEQWKDMGWQGPNPSTDFRGCGFISLENLLFLAKNYPASFQRLLFKQGGNRATWE 167
             L  +IS+QWK+MGWQ  +PSTDFRG GFISLENL F AK    +F RLL KQGG RA WE
Sbjct:    78 LQDLISDQWKNMGWQRKDPSTDFRGDGFISLENLRFFAK----TFSRLLKKQGGKRAAWE 133

Query:   168 YPFAVAGINVSFMLIKMLDLFSEKPRCLPGMNFVRILGEDEAAFDVLYCVAFEMMDAQWL 227
             YPFAVAG+N++FM+++MLDL + KPR    + F+++L E E AF +LYCVAF +MD QWL
Sbjct:   134 YPFAVAGVNITFMIMQMLDLEASKPRSFIRLVFLQMLSESEWAFGLLYCVAFVVMDKQWL 193

Query:   228 AMHASYMEFNEVLK 241
               +A+YMEFN+VL+
Sbjct:   194 DKNATYMEFNDVLR 207

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006909 "phagocytosis" evidence=IEA

DICTYBASE|DDB_G0278051 elmoA "engulfment and cell motility ELM family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 216 (81.1 bits), Expect = 4.5e-22, Sum P(2) = 4.5e-22
 Identities = 42/98 (42%), Positives = 60/98 (61%)

Query:    84 FDESRPDHQAALRDLWRFAFPNVVLNGMISEQWKDMGWQGPNPSTDFRGCGFISLENLLF 143
             F++   +H A L  LW   +P V L   +SEQWK MG+QG +P TDFR  G   L+NL++
Sbjct:   377 FNKESSEHDALLMKLWSLTYPGVKLESRVSEQWKQMGFQGTDPCTDFRAMGIWGLDNLIY 436

Query:   144 LAKNYPASFQRLLFKQGGNRATWEYPFAVAGINVSFML 181
              A+NY   F++++  Q  +R   EYP A AGI ++F L
Sbjct:   437 FAQNYNEKFRKIVNSQI-DRKEREYPTATAGIVLTFEL 473

GO:0030864 "cortical actin cytoskeleton" evidence=IDA

GO:0050764 "regulation of phagocytosis" evidence=IMP

GO:0048870 "cell motility" evidence=IMP

GO:0045159 "myosin II binding" evidence=IPI

GO:0030837 "negative regulation of actin filament polymerization" evidence=IMP

GO:0030587 "sorocarp development" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006909 "phagocytosis" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

DICTYBASE|DDB_G0280943 elmoD "engulfment and cell motility ELM family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 237 (88.5 bits), Expect = 1.6e-18, P = 1.6e-18
 Identities = 56/163 (34%), Positives = 90/163 (55%)

Query:    82 TPFDESRPDHQAALRDLWRFAFPNVVLNGMISEQWKDMGWQGPNPSTDFRGCGFISLENL 141
             TP+++  P HQ  L  LW   FPN V      E W+ +G+Q  +PS+DFRG G   L++L
Sbjct:   299 TPYNKDEPSHQRLLETLWSTLFPNQVFQRS-HENWQIIGFQNKDPSSDFRGMGLAGLKHL 357

Query:   142 LFLAKNYPASFQRLLFKQGGNRATWEYPFAVAGINV-SFML--IKMLDLFSEKPRCLPGM 198
             ++LA+N+   F   L  +    A + YP+A +GI V SF++  +K +++ +     + G 
Sbjct:   358 IYLAQNHKDMFMNPLINRQPE-ANY-YPYATSGIQVTSFLVECVKPINISANHSDVI-GQ 414

Query:   199 NFVRILGEDEAAFDVLYCVAFEMMDAQWLAMHASYMEFNEVLK 241
              +  IL E E A + +YCV  E+    W   +A+YM F +V +
Sbjct:   415 IYP-ILFESENALNEIYCVLMEIFGIVWKDWNATYMIFQKVFQ 456

GO:0006909 "phagocytosis" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

DICTYBASE|DDB_G0280179 elmoB "engulfment and cell motility ELM family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 52/179 (29%), Positives = 99/179 (55%)

Query:    83 PFDESRPDHQAALRDLWRFAFPNVVLNGMISEQWKDMGWQGPNPSTDFRGCGFISLENLL 142
             P+D +  +H+A+L  LW    P+V  +  +S++W  +G+QG +P+TDFRG G + L+NL+
Sbjct:   117 PYDNNNLEHEASLERLWEALLPDVRRSARLSKEWGTLGFQGMDPATDFRGMGILGLDNLI 176

Query:   143 FLAKNYPASFQRLLFKQGGNRATWEYPFAVAGINVSFMLIKMLDLFSEKPRCLPGMNFVR 202
             + +  +    + +L K   ++    YPFA+ GIN++ +++ ++D    KP     + F +
Sbjct:   177 YFSTQHSEDAREIL-KNSNSKCC--YPFAITGINITALVLNLID----KPHFK--IYFFK 227

Query:   203 ILGEDEAAFDVLYCVAFEMMDAQWLAMHA-SYMEFNEVLKVTRRQLERELSLEDIDRIQ 260
               G     F+ LY + F   D  + +    S MEFN +    +++ E ++S ++ D +Q
Sbjct:   228 N-GSTLTQFNELYSLVFISFDRFYQSKKPKSIMEFNTI----KKEFETKIS-QNSDLVQ 280

GO:0006909 "phagocytosis" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

FB|FBgn0037473 CG10068 [Drosophila melanogaster (taxid:7227)]

 Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 51/160 (31%), Positives = 80/160 (50%)

Query:    84 FDESRPDHQAALRDLWRFAFPNVVLNGMISEQWKDMGWQGPNPSTDFRGCGFISLENLLF 143
             +D    DH+  L  LW+   P+  L G +++QW+D+G+QG +P TDFRG G + LENLL+
Sbjct:   134 YDSDNLDHEQKLLRLWQLLMPDTPLTGRVTKQWQDIGFQGDDPKTDFRGMGMLGLENLLY 193

Query:   144 LAKNYPASFQRLLFKQGGNRATWEYPFAVAGINVSFMLIKMLDLFSEKPRCLPGMNFVRI 203
              A  Y  + + +L        T  Y +A+ GIN++ M   ++   + K       N V  
Sbjct:   194 FATAYNDAAKHVLLHS--MHPTLGYTYAIVGINLTSMAFNLVKTGAAKTHFY---NLVVQ 248

Query:   204 LGEDEAA---FDVLYCVAFEMMDAQWLAMHA-SYMEFNEV 239
               +D +    F  LYC  F   D  W+     + M+F E+
Sbjct:   249 HRQDFSTVEDFHKLYCYLFFEFDRFWMESDPRNIMDFREI 288

GO:0006909 "phagocytosis" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0000910 "cytokinesis" evidence=IMP

GO:0090175 "regulation of establishment of planar polarity" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	267
pfam04727	170	pfam04727, ELMO_CED12, ELMO/CED-12 family	1e-63

>gnl|CDD|218231 pfam04727, ELMO_CED12, ELMO/CED-12 family

 Score =  196 bits (501), Expect = 1e-63
 Identities = 71/171 (41%), Positives = 102/171 (59%), Gaps = 1/171 (0%)

Query: 71  ERLQRLQERLQTPFDESRPDHQAALRDLWRFAFPNVVLNGMISEQWKDMGWQGPNPSTDF 130
             L  L++  +TPFD   P+H+  L+ LW+  FP+  L+  +SE+WKD+G+QG +P+TDF
Sbjct: 1   LTLNLLEKLRKTPFDLENPEHRRLLKTLWKALFPDEPLSSRVSEKWKDLGFQGDDPATDF 60

Query: 131 RGCGFISLENLLFLAKNYPASFQRLLFKQGGNRATWEYPFAVAGINVSFMLIKMLDLFSE 190
           RG G + L NLL+ A+NYP  FQ+LL +     A  EYPFAVA INV+ ML ++L +   
Sbjct: 61  RGTGLLGLLNLLYFAENYPDEFQKLLLESSHRPAEHEYPFAVASINVTSMLYELLRIGKL 120

Query: 191 KPRCLPGMNFVRILGEDEAAFDVLYCVAFEMMDAQWLAMHASYMEFNEVLK 241
                    F  +      AF+ LYC  F + D  W  M A+ M+FN+VL+
Sbjct: 121 DQEDYKNYGF-PLFFPTLLAFEELYCALFHLFDRFWKEMRATIMDFNKVLE 170

This family represents a conserved domain which is found in a number of eukaryotic proteins including CED-12, ELMO I and ELMO II. ELMO1 is a component of signalling pathways that regulate phagocytosis and cell migration and is the mammalian orthologue of the C. elegans gene, ced-12. CED-12 is required for the engulfment of dying cells and cell migration. In mammalian cells, ELMO1 interacts with Dock180 as part of the CrkII/Dock180/Rac pathway responsible for phagocytosis and cell migration. ELMO1 is ubiquitously expressed, although its expression is highest in the spleen, an organ rich in immune cells. ELMO1 has a PH domain and a polyproline sequence motif at its C terminus which are not present in this alignment. Length = 170

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	267
KOG2998	302	consensus Uncharacterized conserved protein [Funct	100.0
PF04727	170	ELMO_CED12: ELMO/CED-12 family; InterPro: IPR00681	100.0
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	100.0

>KOG2998 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=7.5e-63  Score=446.27  Aligned_cols=227  Identities=52%  Similarity=0.869  Sum_probs=209.4

Q ss_pred             hHhhhcCCccccc------ccccccccccCCcCCC-CCCCHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHhCCCc
Q 048536           34 FTSAMVGPRAWIG------GLFNRSANRRNERFHD-YHLTPPQEERLQRLQERLQTPFDESRPDHQAALRDLWRFAFPNV  106 (267)
Q Consensus        34 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~-~~Ls~~Q~~~L~~L~~~~~~~~d~~~~~H~~~L~~Lw~~~~~~~  106 (267)
                      .++.+.++.+|+|      ++-|.|..++..+... ..+.+.+.+.++.+++++++|||++|++|+++|++||+.++|++
T Consensus        65 ss~~~~~~~~~~~~v~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~l~~~~e~~~~~~yDs~n~~H~e~L~~lwk~~~p~~  144 (302)
T KOG2998|consen   65 SSEAPPGLISFLGRVMVDKGIKNIVDPNRRIDLAACRHLIPGYRELLQRLEELRQEPYDSDNPDHEELLLDLWKLLYPDK  144 (302)
T ss_pred             ccccChhhhhhhHHHHHHhccccCCCcccchhhhhccccccCcHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHhCCCC
Confidence            3567778888888      7888888888877655 88999999999999999999999999999999999999999999


Q ss_pred             ccCCCCchhhhhcccCCCCCCCCcccchhhhHhhHHHHHhhChHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHHHHHhh
Q 048536          107 VLNGMISEQWKDMGWQGPNPSTDFRGCGFISLENLLFLAKNYPASFQRLLFKQGGNRATWEYPFAVAGINVSFMLIKMLD  186 (267)
Q Consensus       107 ~~~~~~~~~Wk~lGFQg~dP~TDFRg~G~LgL~~LlyFa~~~~~~~~~ll~~q~s~~~~~~yPFAvagINIT~~L~~~L~  186 (267)
                      ++++++|++|++|||||+||+|||||+|+|||+||+|||++||+.+++++.+|  +++.|+|||||||||||+|++++|+
T Consensus       145 ~l~~lvs~qW~emGfQG~dPsTDFRG~GfL~LeNLlyFa~~~~~~aq~lL~~s--~~~r~eYpfAVvgINIT~m~~qmL~  222 (302)
T KOG2998|consen  145 ELPGLVSKQWKEMGFQGADPSTDFRGMGFLGLENLLYFARTYPTSAQRLLLKS--RHPRWEYPFAVVGINITFMAIQMLD  222 (302)
T ss_pred             ccchhHHHHHHHhccCCCCCCcccccchHHHHHHHHHHHHhhhHHHHHHHHhc--CCCccCCceEEEeecHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999996  4567999999999999999999999


Q ss_pred             hcCCCCC-CCCCCcceeccccChhhHHHHHHHHHHHHHHHHHhcCCChhcHHHHHHHHHHHHHHhhccCCCCCCCCCCCC
Q 048536          187 LFSEKPR-CLPGMNFVRILGEDEAAFDVLYCVAFEMMDAQWLAMHASYMEFNEVLKVTRRQLERELSLEDIDRIQDLPAY  265 (267)
Q Consensus       187 ~~~~~~~-~~~~~~f~~ll~~~~~~F~eLy~~~f~~f~~~W~~~~at~mDF~~Vl~~~r~ql~~~L~~~~v~~v~~~~~~  265 (267)
                      +++++.. ++....|     +++.+|+.|||++|..||++|+++++||||||.|++++|.|++++|.++++..++|+|+|
T Consensus       223 ~eal~~~~~~~~~~~-----~~~~~F~~lYc~af~~~d~~Wl~~~~simefn~Vlk~~~~qler~L~~~d~~~~~~lp~~  297 (302)
T KOG2998|consen  223 LEALKKHFNNIVKVF-----ETEPAFDLLYCYAFLEFDKQWLEQRATIMEFNTVLKSFRRQLERELSLDDVLLITDLPAF  297 (302)
T ss_pred             hhhcccccccccccc-----ccHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhhhhhcccccchhh
Confidence            9998543 3333333     788999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC
Q 048536          266 NL  267 (267)
Q Consensus       266 ~~  267 (267)
                      |+
T Consensus       298 ~~  299 (302)
T KOG2998|consen  298 NL  299 (302)
T ss_pred             hh
Confidence            85

>PF04727 ELMO_CED12: ELMO/CED-12 family; InterPro: IPR006816 This entry represents the ELMO (EnguLfment and Cell MOtility) domain, which is found in a number of eukaryotic proteins involved in the cytoskeletal rearrangements required for phagocytosis of apoptotic cells and cell motility, including CED-12, ELMO-1 and ELMO-2

Probab=100.00  E-value=1.6e-49  Score=338.71  Aligned_cols=169  Identities=40%  Similarity=0.769  Sum_probs=152.4

Q ss_pred             HHHHHHHHhCCCCCCCcHHHHHHHHHHHHHhCCCcccCCCCchhhhhcccCCCCCCCCcccchhhhHhhHHHHHhhChHH
Q 048536           72 RLQRLQERLQTPFDESRPDHQAALRDLWRFAFPNVVLNGMISEQWKDMGWQGPNPSTDFRGCGFISLENLLFLAKNYPAS  151 (267)
Q Consensus        72 ~L~~L~~~~~~~~d~~~~~H~~~L~~Lw~~~~~~~~~~~~~~~~Wk~lGFQg~dP~TDFRg~G~LgL~~LlyFa~~~~~~  151 (267)
                      .|+.|++++++|||++|++|+++|++||++++|+.+.+++.+++|++|||||+||+|||||+|+|||+||+||+++||+.
T Consensus         2 ~l~~l~~~~~~~~d~~~~~h~~~L~~Lw~~~~~~~~~~~~~~~~W~~lGFQ~~dP~tDFR~~G~LgL~~L~yf~~~~~~~   81 (170)
T PF04727_consen    2 TLNLLRALAKTPFDPENPEHEELLQELWNALFPDEPPFSRISEHWKELGFQGEDPATDFRGMGLLGLDCLLYFAENYPDE   81 (170)
T ss_pred             hHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCCccCCcCccHHHHhCCCCCCcHHHHhhhhHHHHHHHHHHHHHChHH
Confidence            57899999999999999999999999999999998889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCCCCCcchHHHHHHHHHHHHHHhhhcCCCCCCCCCCcceeccccChhhHHHHHHHHHHHHHHHHHhcCC
Q 048536          152 FQRLLFKQGGNRATWEYPFAVAGINVSFMLIKMLDLFSEKPRCLPGMNFVRILGEDEAAFDVLYCVAFEMMDAQWLAMHA  231 (267)
Q Consensus       152 ~~~ll~~q~s~~~~~~yPFAvagINIT~~L~~~L~~~~~~~~~~~~~~f~~ll~~~~~~F~eLy~~~f~~f~~~W~~~~a  231 (267)
                      +++|+.++.++.+..+||||+||||||.+|+++|+++...+.......+.. +++.+.+|++|||++|.+|+++|++++|
T Consensus        82 ~~~~l~~~~~~~~~~~~Pfa~~~invt~~l~~~l~~~~~~~~~~~~~~~~~-~~~~~~~f~elf~~~f~~f~~~W~~~~a  160 (170)
T PF04727_consen   82 FRRILREQSSRSDENWYPFAVASINVTSLLCELLKLGALDSEFYKRINFLS-FFSSLEAFEELFCACFQLFDRTWKEMNA  160 (170)
T ss_pred             HHHHHHHccCcccccccHHHHHHHHHHHHHHHHHhhcccCHHHhhcccccc-cCccHHHHHHHHHHHHHHHHHHHccCCC
Confidence            999999987766667999999999999999999999765443332211111 4677889999999999999999999999


Q ss_pred             ChhcHHHHHH
Q 048536          232 SYMEFNEVLK  241 (267)
Q Consensus       232 t~mDF~~Vl~  241 (267)
                      ++|||++|++
T Consensus       161 t~~dF~~V~~  170 (170)
T PF04727_consen  161 TIMDFNKVLK  170 (170)
T ss_pred             CHHHHHhhcC
Confidence            9999999975

ELMO-1 and ELMO-2 are components of signalling pathways that regulate phagocytosis and cell migration and are mammalian orthologues of the Caenorhabditis elegans gene, ced-12 that is required for the engulfment of dying cells and cell migration. ELMO-1/2 act in association with DOCK1 and CRK. ELMO-1/2 interact with the SH3-domain of DOCK1 via an SH3-binding site to enhance the guanine nucleotide exchange factor (GEF) activity of DOCK1. ELMO-1/2 could be part of a complex with DOCK1 and Rac1 that could be required to activate Rac Rho small GTPases. Regulatory GTPases in the Ras superfamily employ a cycle of alternating GTP binding and hydrolysis, controlled by guanine nucleotide exchange factors and GTPase-activating proteins (GAPs), as essential features of their actions in cells. Within the Ras superfamily, the Arf family is composed of 30 members, including 22 Arf-like (Arl) proteins. The ELMO domain has been proposed to be a GAP domain for ARL2 and other members of the Arf family [].; GO: 0006909 phagocytosis, 0005856 cytoskeleton

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=100.00  E-value=2.9e-34  Score=276.87  Aligned_cols=199  Identities=24%  Similarity=0.469  Sum_probs=183.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHhCCCcccC-----------CCCchhhhhcccCC-CCCCCC
Q 048536           62 DYHLTPPQEERLQRLQERLQTPFDESRPDHQAALRDLWRFAFPNVVLN-----------GMISEQWKDMGWQG-PNPSTD  129 (267)
Q Consensus        62 ~~~Ls~~Q~~~L~~L~~~~~~~~d~~~~~H~~~L~~Lw~~~~~~~~~~-----------~~~~~~Wk~lGFQg-~dP~TD  129 (267)
                      +++|+..|...+..+..|+.++.|+.+...++.++.+-..+|.++.-+           .+.....|.+||-. .||+.|
T Consensus       275 ~~~lyvlq~L~~glle~Rm~~~md~~~q~qr~~i~~lr~iaf~~~~~~~~~g~~~e~rk~l~~~~ykklgf~n~~npa~d  354 (713)
T KOG2999|consen  275 PIQLYVLQVLTLGLLEVRMRTKMDPQDQVQRELISELRRIAFDDESEPSRRGGGAEVRKILDIESYKKLGFENRINPAQD  354 (713)
T ss_pred             hHHHHHHHHHHHhhhHHhhhcccchhhHHHHHHHHHHHhcCcccccccccCCcchhhhhhhhHHHHHhhcccccCChHHh
Confidence            459999999999999999999999999999999999999999774322           24568999999998 899999


Q ss_pred             cc--cchhhhHhhHHHHHhhChHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHHHHHhhhcCCCCCCCCCCcceeccccC
Q 048536          130 FR--GCGFISLENLLFLAKNYPASFQRLLFKQGGNRATWEYPFAVAGINVSFMLIKMLDLFSEKPRCLPGMNFVRILGED  207 (267)
Q Consensus       130 FR--g~G~LgL~~LlyFa~~~~~~~~~ll~~q~s~~~~~~yPFAvagINIT~~L~~~L~~~~~~~~~~~~~~f~~ll~~~  207 (267)
                      |-  .+|+|+|+||+|||++||+.+.+++.++.++.++++|||+.++|.+|.|||++|+++.  +.+.....|.|+||.+
T Consensus       355 f~etppG~LAldnMvyFA~~~~~~y~riVlENSsRedkhecpfgr~sieltk~lcEilrVge--~p~E~~~df~pmfFth  432 (713)
T KOG2999|consen  355 FGETPPGRLALDNMVYFARNSPQDYRRIVLENSSREDKHECPFGRMSIELTKILCELLRVGE--PPDELDRDFIPMFFTH  432 (713)
T ss_pred             cccCCchHHHHHHHHHHHHhCHHHHHHHHHhcccccccCcCCcCccHHHHHHHHHHHHhcCC--CchhhcCccceeeecC
Confidence            98  8999999999999999999999999999999999999999999999999999999976  4445556799999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHhcCCChhcHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q 048536          208 EAAFDVLYCVAFEMMDAQWLAMHASYMEFNEVLKVTRRQLERELSLEDIDRIQDLP  263 (267)
Q Consensus       208 ~~~F~eLy~~~f~~f~~~W~~~~at~mDF~~Vl~~~r~ql~~~L~~~~v~~v~~~~  263 (267)
                      +..|+++||+|.++|+++|++|+||-.||++|+++||+||.|+|+.+ +++++++.
T Consensus       433 d~~Fee~FciciqLlnkTWKEMrAt~edf~KVmqVVrEQl~r~L~~k-p~sld~fk  487 (713)
T KOG2999|consen  433 DTPFEELFCICVQLLNRTWKEMRATAEDFEKVMQVVREQLRRALKRK-PQSLDQFK  487 (713)
T ss_pred             CCcHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHHhccC-CccHHHHH
Confidence            99999999999999999999999999999999999999999999986 88887764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	267
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 6e-05
 Identities = 56/301 (18%), Positives = 99/301 (32%), Gaps = 74/301 (24%)

Query: 4   DEIYWRQKKDDEE----LEWSQNSSHVISQLAQCFTSAMVGPR-AWIGGLFNRSANRRNE 58
           D I     KD       L W+  S     ++ Q F   ++     +   L +     + +
Sbjct: 52  DHII--MSKDAVSGTLRLFWTLLSKQ--EEMVQKFVEEVLRINYKF---LMSPIKTEQRQ 104

Query: 59  RFHDYHLTPPQEERLQRLQERLQTPFDESRPDH----QAALRDLWRFAFPNVVLNGM--I 112
                 +   Q +RL    +     ++ SR       + AL +L R A  NV+++G+   
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVF-AKYNVSRLQPYLKLRQALLEL-RPA-KNVLIDGVLGS 161

Query: 113 SEQW------KDMGWQGPNPST----DFRGCGFISLENLLFLAKNYPASFQRLLFKQGGN 162
            + W           Q          + + C   S E +L          Q+LL++   N
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN--SPETVL-------EMLQKLLYQIDPN 212

Query: 163 RATWEYPFAVAGINVSFMLIKMLDLFSEK--PRCLPGMNFVRILGEDE-------AAFDV 213
             +     +   + +  +  ++  L   K    CL       +L            AF+ 
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL------LVL--LNVQNAKAWNAFN- 263

Query: 214 LYC----------VAFEMMDAQWLAMHASYMEFNEVLKVTRRQLERELSLEDID-RIQDL 262
           L C          V   +  A     H S    +  L  T  +++  L L+ +D R QDL
Sbjct: 264 LSCKILLTTRFKQVTDFLSAAT--TTHISLDHHSMTL--TPDEVK-SLLLKYLDCRPQDL 318

Query: 263 P 263
           P
Sbjct: 319 P 319

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00