Citrus Sinensis ID: 048572

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230----
Protein Sequence
MSLRQRPTTSSEQQQPPISSAQSSTSPTSITPTATTPATSIPPSSSTSLSRRALSQTLTSTANLANLLPTGTLLAFQLLTPIFTNNGSCDAATGPLTLLLLLLLAASCLLASFTDSVKSSSSGQVYYGFATFKGLFLFDYIQNPNASDHDLPDLIKYRIRFIDGVHAVSSVLVFAAVALRDKNVLSCFFPTPKHETQEVLDIVPVGIGLICSLLFVIFPTRRHGIGYPITPGKY
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEEcccccEEEcccccccccccccccccccEEEEccHHHHHHHHHHHHHHHHccccccEEEcccccHHHHHHHHHHHHHHHHHHHEEEEEccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccEEccccEEEEEEEcccccEEEcccccccccccccccHHHHcHcHHHHHHHHHHHHHHHHHHHHccccHEcccccccccHHHHHHHcccEEEEEHHEEEEEccccccccccccccccc
Coil and Loop (DISEMBL)
mslrqrpttsseqqqppissaqsstsptsitptattpatsippssstslsRRALSQTLTSTANLANLLPTGTLLAFQLltpiftnngscdaatgPLTLLLLLLLAASCLLASFtdsvkssssgqvyYGFATFKGLFLFdyiqnpnasdhdlpdLIKYRIRFIDGVHAVSSVLVFAAVALRdknvlscffptpkhetqevldIVPVGIGLICSLLFVifptrrhgigypitpgky
Flexible Loop (DISEMBL)
mslrqrpttsseqqqppissaqsstsptsitptattpatsippssstsLSRRALSQTLTSTANLANLLPTGTLLAFQLLTPIFTNNGSCDAATGPLTLLLLLLLAASCLLASFTDsvkssssgQVYYGFATFKGLFLFDYIQNPNASDHDLPDLIKYRIRFIDGVHAVSSVLVFAAVALRDKNVLSCFFPTPKHETQEVLDIVPVGIGLICSLLFVIfptrrhgigypitpgky
Low Complexity Region (SEG)
MSLRqrpttsseqqqppissaqsstsptsitptattpatsippssstslsrralsqtltstanlanllptGTLLAFQLLTPIFTNNGSCDAATGPltlllllllaascllaSFTDSVKSSSSGQVYYGFATFKGLFLFDYIQNPNASDHDLPDLIKYRIRFIDGVHavssvlvfaavalRDKNVLSCFFPTPKHETQEVLDIVPVGIGLICSLLFVIFPTRRHGIGYPITPGKY
Disordered region (IsUnstruct)
************************************************************TANLANLLPTGTLLAFQLLTPIFTNNGSCDAATGPLTLLLLLLLAASCLLAS************VYYGFATFKGLFLFDYIQNPNASDHDLPDLIKYRIRFIDGVHAVSSVLVFAAVALRDKNVLSCFFPTPKHETQEVLDIVPVGIGLICSLLFVIFPTRRHGIGYPI*****
Disordered Region (DISOPRED)
********************************************************TLTSTANLANLLPTGTLLAFQLLTPIFTNNGSCDAATGPLTLLLLLLLAASCLLASFTDSVKSSSSGQVYYGFATFKGLFLFDY**************IKYRIRFIDGVHAVSSVLVFAAVALRDKNVLSCFFPTPKHETQEVLDIVPVGIGLICSLLFVIFPTRRHGIGYP******
Disordered Region (DISEMBL)
******************************************************SQTLTSTANLANLLPTGTLLAFQLLTPIFTNNGSCDAATGPLTLLLLLLLAASCLLASFTDSVKSSSSGQVYYGFATFKGLFLFDYIQNPNASDHDLPDLIKYRIRFIDGVHAVSSVLVFAAVALRDKNVLSCFFPTPKHETQEVLDIVPVGIGLICSLLFVIFPTRRHGIGYPITPGKY
Disordered Region (DISPRO)
***********************************************SLSRRALSQTLTSTANLANLLPTGTLLAFQLLTPIFTNNGSCDAATGPLTLLLLLLLAASCLLASFTDSVKSSSSGQVYYGFATFKGLFLFDYIQNPNASDHDLPDLIKYRIRFIDGVHAVSSVLVFAAVALRDKNVLSCFFPTPKHETQEVLDIVPVGIGLICSLLFVIFPTRRHGIGYPITP***
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLRQRPTTSSEQQQPPISSAQSSTSPTSITPTATTPATSIPPSSSTSLSRRALSQTLTSTANLANLLPTGTLLAFQLLTPIFTNNGSCDAATGPLTLLLLLLLAASCLLASFTDSVKSSSSGQVYYGFATFKGLFLFDYIQNPNASDHDLPDLIKYRIRFIDGVHAVSSVLVFAAVALRDKNVLSCFFPTPKHETQEVLDIVPVGIGLICSLLFVIFPTRRHGIGYPITPGKY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	234
224119990	233	predicted protein [Populus trichocarpa]	0.982	0.987	0.661	1e-77
255571014	230	conserved hypothetical protein [Ricinus	0.769	0.782	0.770	8e-75
224129676	230	predicted protein [Populus trichocarpa]	0.982	1.0	0.639	4e-69
297739529	238	unnamed protein product [Vitis vinifera]	0.910	0.894	0.572	1e-64
297803680	213	hypothetical protein ARALYDRAFT_492419 [	0.871	0.957	0.617	2e-64
15232906	219	uncharacterized protein [Arabidopsis tha	0.816	0.872	0.625	3e-64
297828694	219	hypothetical protein ARALYDRAFT_896211 [	0.816	0.872	0.620	2e-62
15233785	213	uncharacterized protein [Arabidopsis tha	0.863	0.948	0.604	4e-60
326505394	230	predicted protein [Hordeum vulgare subsp	0.756	0.769	0.639	4e-56
255536717	206	conserved hypothetical protein [Ricinus	0.782	0.888	0.549	3e-52

>gi|224119990|ref|XP_002331110.1| predicted protein [Populus trichocarpa] gi|222872838|gb|EEF09969.1| predicted protein [Populus trichocarpa]

 Score =  295 bits (755), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 156/236 (66%), Positives = 179/236 (75%), Gaps = 6/236 (2%)

Query: 1   MSLRQRPTTSSEQQQPPISSAQSSTSPTSITPT---ATTPATSIPPSSSTSLSRRALSQT 57
           MSLR R T SS++   P   +  S+S  +          P T   PS   + S+RA+SQT
Sbjct: 1   MSLRPRTTPSSKKSSIPAEISTGSSSSATSNDNYINKNEPETPKSPSRPPTFSQRAISQT 60

Query: 58  LTSTANLANLLPTGTLLAFQLLTPIFTNNGSCDAATGPLTLLLLLLLAASCLLASFTDSV 117
           LTSTANLANLLPTGTLLAFQ+LTPIFTNNG+CD+AT P+T +LL LLA SC L SFTDSV
Sbjct: 61  LTSTANLANLLPTGTLLAFQILTPIFTNNGACDSATAPMTSVLLALLAVSCFLGSFTDSV 120

Query: 118 KSSSSGQVYYGFATFKGLFLFDYIQNPNASDHDLPDLIKYRIRFIDGVHAVSSVLVFAAV 177
           KS + GQVYYGFAT KG+FLFD    P+     L DL K ++RFID VHAV SVLVF AV
Sbjct: 121 KSPTDGQVYYGFATLKGMFLFDC---PDPVGSGLSDLSKLKLRFIDVVHAVLSVLVFVAV 177

Query: 178 ALRDKNVLSCFFPTPKHETQEVLDIVPVGIGLICSLLFVIFPTRRHGIGYPITPGK 233
           ALRDKNVLSCF+P PKHETQEVLD++PVGIGLICSLLF+ FPTRRHGIGYP+TPGK
Sbjct: 178 ALRDKNVLSCFYPMPKHETQEVLDVIPVGIGLICSLLFMAFPTRRHGIGYPVTPGK 233

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571014|ref|XP_002526458.1| conserved hypothetical protein [Ricinus communis] gi|223534238|gb|EEF35953.1| conserved hypothetical protein [Ricinus communis]

 Score =  285 bits (730), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 141/183 (77%), Positives = 156/183 (85%), Gaps = 3/183 (1%)

Query: 51  RRALSQTLTSTANLANLLPTGTLLAFQLLTPIFTNNGSCDAATGPLTLLLLLLLAASCLL 110
           +RA+SQTLTSTANLANLLPTGTLLAFQLLTPIFTNNG+CD+ T P+TL LL LLA SC L
Sbjct: 51  QRAISQTLTSTANLANLLPTGTLLAFQLLTPIFTNNGACDSVTRPMTLCLLALLAISCFL 110

Query: 111 ASFTDSVKSSSSGQVYYGFATFKGLFLFDYIQNPNASDHDLPDLIKYRIRFIDGVHAVSS 170
           +SFTDSVKSS   QVYYG ATFKG+FLFD    P+     L DL KY+IRFIDGVH+V S
Sbjct: 111 SSFTDSVKSSDGKQVYYGIATFKGIFLFDC---PDPVGAGLKDLSKYKIRFIDGVHSVLS 167

Query: 171 VLVFAAVALRDKNVLSCFFPTPKHETQEVLDIVPVGIGLICSLLFVIFPTRRHGIGYPIT 230
           VLVF A ALRDKNV+SCF+P PKHETQEVL+I PVGIGLICSLLFV+FPTRRHGIGYP+T
Sbjct: 168 VLVFIAFALRDKNVVSCFYPMPKHETQEVLNIAPVGIGLICSLLFVVFPTRRHGIGYPVT 227

Query: 231 PGK 233
            GK
Sbjct: 228 AGK 230

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129676|ref|XP_002328775.1| predicted protein [Populus trichocarpa] gi|222839073|gb|EEE77424.1| predicted protein [Populus trichocarpa]

 Score =  266 bits (681), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 149/233 (63%), Positives = 183/233 (78%), Gaps = 3/233 (1%)

Query: 1   MSLRQRPTTSSEQQQPPISSAQSSTSPTSITPTATTPATSIPPSSSTSLSRRALSQTLTS 60
           MSLR R T++ +   P +S+  SS++ ++       P T   PS   +LS+RA+SQTLTS
Sbjct: 1   MSLRPRTTSTKQLSIPEVSTQSSSSTTSNDNSNNVQPETPKSPSRPPTLSQRAISQTLTS 60

Query: 61  TANLANLLPTGTLLAFQLLTPIFTNNGSCDAATGPLTLLLLLLLAASCLLASFTDSVKSS 120
           TANLANLLPTGTLLAFQLLTP FTNNG+CD+AT P+TL+LL LLA SC LASFTDSV+S 
Sbjct: 61  TANLANLLPTGTLLAFQLLTPFFTNNGACDSATRPMTLILLALLALSCFLASFTDSVRSP 120

Query: 121 SSGQVYYGFATFKGLFLFDYIQNPNASDHDLPDLIKYRIRFIDGVHAVSSVLVFAAVALR 180
           + G+VYYG A+FKG++LFD    P+ +   L DL K+++ FID VHAV SVLVF +VALR
Sbjct: 121 TDGRVYYGLASFKGMYLFDC---PDPAASGLVDLSKFKMGFIDVVHAVLSVLVFISVALR 177

Query: 181 DKNVLSCFFPTPKHETQEVLDIVPVGIGLICSLLFVIFPTRRHGIGYPITPGK 233
           +KNVLSCF+P PKHETQEVL IVP+G+GLICSLLFV+FPTRRHGIGYP+  GK
Sbjct: 178 EKNVLSCFYPMPKHETQEVLSIVPIGVGLICSLLFVVFPTRRHGIGYPVVQGK 230

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739529|emb|CBI29711.3| unnamed protein product [Vitis vinifera]

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 138/241 (57%), Positives = 167/241 (69%), Gaps = 28/241 (11%)

Query: 1   MSLRQRPTTSSE--QQQPPISSAQSSTSPTS------ITPTATTPATSIPPSSSTSLSRR 52
           M+LR RP TS +  + +  +   Q+S+S            ++ +P  S   S+ ++L +R
Sbjct: 18  MALRARPVTSKQPSESEETLKITQTSSSDDEEVSDLPKPYSSLSPPPSPSSSAPSTLRQR 77

Query: 53  ALSQTLTSTANLANLLPTGTLLAFQLLTPIFTNNGSCDAATGPLTLLLLLLLAASCLLAS 112
           ALSQTL STANLANLLPTGTLLAFQLLTP+FTNNG+CDA T                   
Sbjct: 78  ALSQTLASTANLANLLPTGTLLAFQLLTPVFTNNGACDAVT------------------R 119

Query: 113 FTDSVKSSSSGQVYYGFATFKGLFLFDYIQNPNASDHDLPDLIKYRIRFIDGVHAVSSVL 172
           FTDS K+   G+V+YG ATFKGL+LFDY+ + + S   LPDL KY+ RFIDGVHAV SVL
Sbjct: 120 FTDSFKTPD-GRVFYGIATFKGLWLFDYV-DESGSAASLPDLSKYKFRFIDGVHAVLSVL 177

Query: 173 VFAAVALRDKNVLSCFFPTPKHETQEVLDIVPVGIGLICSLLFVIFPTRRHGIGYPITPG 232
           VF AVA+RDKNV+SCF+P P  E QEVLDIVPVGIGLICSLLFV+FPT RHGIGYP+T  
Sbjct: 178 VFVAVAMRDKNVVSCFYPQPAREVQEVLDIVPVGIGLICSLLFVVFPTTRHGIGYPVTHA 237

Query: 233 K 233
           K
Sbjct: 238 K 238

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297803680|ref|XP_002869724.1| hypothetical protein ARALYDRAFT_492419 [Arabidopsis lyrata subsp. lyrata] gi|297315560|gb|EFH45983.1| hypothetical protein ARALYDRAFT_492419 [Arabidopsis lyrata subsp. lyrata]

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 129/209 (61%), Positives = 157/209 (75%), Gaps = 5/209 (2%)

Query: 23  SSTSPTSITPTATTP-ATSIPPSSSTSLSRRALSQTLTSTANLANLLPTGTLLAFQLLTP 81
           SS+S T   PT++   + S+P     +    A+SQTLTS ANLANLLPTGTLLAF LL P
Sbjct: 3   SSSSLTQRNPTSSQEQSESVPQLRRQTSQHAAMSQTLTSAANLANLLPTGTLLAFTLLIP 62

Query: 82  IFTNNGSCDAATGPLTLLLLLLLAASCLLASFTDSVKSSSSGQVYYGFATFKGLFLFDYI 141
           +FT+NGSCD  T  LT  LL LL+ SC L+SFTDSVK+   G VYYGFAT KG+++FDY 
Sbjct: 63  VFTSNGSCDYPTRVLTAGLLTLLSISCFLSSFTDSVKAED-GNVYYGFATRKGMWIFDY- 120

Query: 142 QNPNASDHDLPDLIKYRIRFIDGVHAVSSVLVFAAVALRDKNVLSCFFPTPKHETQEVLD 201
             P+     LPDL KYRIR ID +HAV SVLVF AVALRDKN +SCF+P P+ ET++VLD
Sbjct: 121 --PDPDGLGLPDLSKYRIRIIDWIHAVLSVLVFGAVALRDKNAVSCFYPAPEQETKKVLD 178

Query: 202 IVPVGIGLICSLLFVIFPTRRHGIGYPIT 230
           IVP+G+G+IC LLF++FP RRHGIGYP+T
Sbjct: 179 IVPMGVGVICGLLFLVFPARRHGIGYPVT 207

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232906|ref|NP_186892.1| uncharacterized protein [Arabidopsis thaliana] gi|6957706|gb|AAF32450.1| hypothetical protein [Arabidopsis thaliana] gi|49660133|gb|AAT68357.1| hypothetical protein At3g02430 [Arabidopsis thaliana] gi|50058917|gb|AAT69203.1| hypothetical protein At3g02430 [Arabidopsis thaliana] gi|332640286|gb|AEE73807.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 122/195 (62%), Positives = 153/195 (78%), Gaps = 4/195 (2%)

Query: 36  TPATSIPPSSSTSLSRRALSQTLTSTANLANLLPTGTLLAFQLLTPIFTNNGSCDAATGP 95
           TP+ S       S+S+RA+S TLTS ANL+NLLPTGTLLAFQLLTP+FT+NG CD AT  
Sbjct: 23  TPSESRVLKRQMSMSQRAMSNTLTSAANLSNLLPTGTLLAFQLLTPVFTSNGVCDHATRF 82

Query: 96  LTLLLLLLLAASCLLASFTDSVKSSSSGQVYYGFATFKGLFLFDYIQNPNASDHDLPDLI 155
           LT +LL LLAASC ++SFTDSVK+   G +Y+GF TFKG+++ DY   P+ S   LPDL 
Sbjct: 83  LTAVLLFLLAASCFVSSFTDSVKADD-GTIYFGFVTFKGMWVVDY---PDPSGLGLPDLA 138

Query: 156 KYRIRFIDGVHAVSSVLVFAAVALRDKNVLSCFFPTPKHETQEVLDIVPVGIGLICSLLF 215
           KYR+RF+D +HA  SVLVF AVALRDK +  CF+P+P+ ET+ VLDIVPVG+G++CSLLF
Sbjct: 139 KYRMRFVDWIHATLSVLVFGAVALRDKYITDCFYPSPEAETKHVLDIVPVGVGVMCSLLF 198

Query: 216 VIFPTRRHGIGYPIT 230
           ++FP RRHGIGY +T
Sbjct: 199 MVFPARRHGIGYLVT 213

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297828694|ref|XP_002882229.1| hypothetical protein ARALYDRAFT_896211 [Arabidopsis lyrata subsp. lyrata] gi|297328069|gb|EFH58488.1| hypothetical protein ARALYDRAFT_896211 [Arabidopsis lyrata subsp. lyrata]

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 121/195 (62%), Positives = 151/195 (77%), Gaps = 4/195 (2%)

Query: 36  TPATSIPPSSSTSLSRRALSQTLTSTANLANLLPTGTLLAFQLLTPIFTNNGSCDAATGP 95
           TP+ S       S+S+RA+S TLTS ANL+NLLPTGTLLAFQLLTP+FT+NG CD AT  
Sbjct: 23  TPSDSRVLKRQMSISQRAMSNTLTSAANLSNLLPTGTLLAFQLLTPVFTSNGVCDHATRF 82

Query: 96  LTLLLLLLLAASCLLASFTDSVKSSSSGQVYYGFATFKGLFLFDYIQNPNASDHDLPDLI 155
           LT +LL LLAASC ++SFTDSVK+   G +Y+GF TFKG+++ DY   P+ S   LPDL 
Sbjct: 83  LTAVLLFLLAASCFVSSFTDSVKAED-GTIYFGFVTFKGMWVVDY---PDPSGLGLPDLA 138

Query: 156 KYRIRFIDGVHAVSSVLVFAAVALRDKNVLSCFFPTPKHETQEVLDIVPVGIGLICSLLF 215
           KYR+R +D +HA  SVLVF AVALRDK +  CF P+P+ ET+ VLDIVPVG+G++CSLLF
Sbjct: 139 KYRMRVVDWIHATLSVLVFGAVALRDKYITDCFCPSPEAETKHVLDIVPVGVGVMCSLLF 198

Query: 216 VIFPTRRHGIGYPIT 230
           ++FP RRHGIGY +T
Sbjct: 199 MVFPARRHGIGYLVT 213

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15233785|ref|NP_194162.1| uncharacterized protein [Arabidopsis thaliana] gi|5051773|emb|CAB45066.1| putative protein [Arabidopsis thaliana] gi|7269281|emb|CAB79341.1| putative protein [Arabidopsis thaliana] gi|28466871|gb|AAO44044.1| At4g24310 [Arabidopsis thaliana] gi|110736143|dbj|BAF00043.1| hypothetical protein [Arabidopsis thaliana] gi|332659488|gb|AEE84888.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  236 bits (603), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 127/210 (60%), Positives = 160/210 (76%), Gaps = 8/210 (3%)

Query: 25  TSPTSIT---PTATTPATSIPPSSSTSLSRRA-LSQTLTSTANLANLLPTGTLLAFQLLT 80
           +SP+S+T   PT++   +   P      S+ A +SQTLTS ANLANLLPTGTLLAF LL 
Sbjct: 2   SSPSSLTQRNPTSSQEQSESVPQLRRQTSQHAVMSQTLTSAANLANLLPTGTLLAFTLLI 61

Query: 81  PIFTNNGSCDAATGPLTLLLLLLLAASCLLASFTDSVKSSSSGQVYYGFATFKGLFLFDY 140
           P+FT+NGSCD  T  LT++LL LL+ SC L+SFTDSVK+   G VYYGFAT KG+++FDY
Sbjct: 62  PVFTSNGSCDYPTQVLTIVLLTLLSISCFLSSFTDSVKAED-GNVYYGFATRKGMWVFDY 120

Query: 141 IQNPNASDHDLPDLIKYRIRFIDGVHAVSSVLVFAAVALRDKNVLSCFFPTPKHETQEVL 200
              P+     LP+L KYRIR ID +HAV SVLVF AVALRDKN +SCF+P P+ ET++VL
Sbjct: 121 ---PDPDGLGLPNLSKYRIRIIDWIHAVLSVLVFGAVALRDKNAVSCFYPAPEQETKKVL 177

Query: 201 DIVPVGIGLICSLLFVIFPTRRHGIGYPIT 230
           DIVP+G+G+IC +LF++FP RRHGIGYP+T
Sbjct: 178 DIVPMGVGVICGMLFLVFPARRHGIGYPVT 207

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326505394|dbj|BAJ95368.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 117/183 (63%), Positives = 138/183 (75%), Gaps = 6/183 (3%)

Query: 51  RRALSQTLTSTANLANLLPTGTLLAFQLLTPIFTNNGSCDAATGPLTLLLLLLLAASCLL 110
           R  L Q LTSTA+LANLLPTGT+LAFQLL P FTN+G+CDA T  LT +LL +LA SCLL
Sbjct: 47  RSTLYQALTSTASLANLLPTGTVLAFQLLAPAFTNHGACDATTALLTRILLAVLALSCLL 106

Query: 111 ASFTDSVKSSSSGQVYYGFATFKGLFLFDYIQNPNASDHDLPDLIKYRIRFIDGVHAVSS 170
           ASFTDS+K    G+VYYG AT +GL+L DY   P A     PD  +YR+  ID VHA  S
Sbjct: 107 ASFTDSLK-GPDGRVYYGVATLRGLWLLDY--PPGAPTP--PDTARYRLAPIDAVHAALS 161

Query: 171 VLVFAAVALRDKNVLSCFF-PTPKHETQEVLDIVPVGIGLICSLLFVIFPTRRHGIGYPI 229
           V VF  VA RDKNV+ CF+ P+P  ET+EVLDIVP+G+G++CSLLFV FPTRRHGIGYP+
Sbjct: 162 VAVFGVVAARDKNVVRCFYGPSPARETEEVLDIVPLGVGVLCSLLFVAFPTRRHGIGYPV 221

Query: 230 TPG 232
           T G
Sbjct: 222 TNG 224

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255536717|ref|XP_002509425.1| conserved hypothetical protein [Ricinus communis] gi|223549324|gb|EEF50812.1| conserved hypothetical protein [Ricinus communis]

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 105/191 (54%), Positives = 144/191 (75%), Gaps = 8/191 (4%)

Query: 41  IPPSSSTSLSRRALSQTLTSTANLANLLPTGTLLAFQLLTPIFTNNGSCDAATGPLTLLL 100
           IP +   +L ++A+SQT  STA+LANLLPTGT+LAFQLL+PIF+N G+CD  +  +T  L
Sbjct: 21  IPNTEEKNLIQKAISQTFKSTAHLANLLPTGTVLAFQLLSPIFSNQGNCDPVSRFMTAGL 80

Query: 101 LLLLAASCLLASFTDSVKSSSSGQVYYGFATFKGLFLFDYIQNPNASDHDLPDL-IKYRI 159
           + L   SC L+SFTDSV+  + G V YGFAT  GL++ D       S    P++  KYR+
Sbjct: 81  VSLCGLSCFLSSFTDSVRDEN-GNVSYGFATVHGLWIID------GSTTISPEIATKYRL 133

Query: 160 RFIDGVHAVSSVLVFAAVALRDKNVLSCFFPTPKHETQEVLDIVPVGIGLICSLLFVIFP 219
           +FID +HA+ S+LVF+A+AL D+NV++CF+PTP  ETQE+L  +PVGIG+ICS+LFV+FP
Sbjct: 134 KFIDFMHAIMSILVFSAIALFDQNVVACFYPTPSAETQELLTTLPVGIGMICSMLFVVFP 193

Query: 220 TRRHGIGYPIT 230
           T+RHGIG+PI+
Sbjct: 194 TQRHGIGFPIS 204

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	234
TAIR|locus:2135952	213	AT4G24310 "AT4G24310" [Arabido	0.666	0.732	0.518	1.6e-40
TAIR|locus:2076894	219	AT3G02430 "AT3G02430" [Arabido	0.666	0.712	0.512	2.6e-40
TAIR|locus:505006493	213	AT4G18425 "AT4G18425" [Arabido	0.649	0.713	0.401	5.2e-26
TAIR|locus:2161393	214	AT5G46090 "AT5G46090" [Arabido	0.649	0.710	0.401	1.8e-25
TAIR|locus:1009023066	243	AT1G09157 "AT1G09157" [Arabido	0.662	0.637	0.300	2.8e-18
TAIR|locus:2164850	244	DAU2 "AT5G39650" [Arabidopsis	0.662	0.635	0.294	2.5e-17
TAIR|locus:2089865	184	DMP2 "AT3G21550" [Arabidopsis	0.628	0.798	0.335	4.7e-16
TAIR|locus:2089915	207	DMP1 "AT3G21520" [Arabidopsis	0.636	0.719	0.322	7.7e-16
TAIR|locus:504955516	165	DMP7 "AT4G28485" [Arabidopsis	0.423	0.6	0.375	9.8e-16
TAIR|locus:2146380	191	AT5G27370 "AT5G27370" [Arabido	0.662	0.811	0.283	1.4e-09

TAIR|locus:2135952 AT4G24310 "AT4G24310" [Arabidopsis thaliana (taxid:3702)]

 Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 83/160 (51%), Positives = 104/160 (65%)

Query:    71 GTLLAFQLLTPIFTNNGSCDAATGPXXXXXXXXXXXXXXXXSFTDSVKSSSSGQVYYGFA 130
             GTLLAF LL P+FT+NGSCD  T                  SFTDSVK+   G VYYGFA
Sbjct:    52 GTLLAFTLLIPVFTSNGSCDYPTQVLTIVLLTLLSISCFLSSFTDSVKAED-GNVYYGFA 110

Query:   131 TFKGLFLFDYIQNPNASDHDLPDLIKYRIRFIDGVHXXXXXXXXXXXXXRDKNVLSCFFP 190
             T KG+++FDY   P+     LP+L KYRIR ID +H             RDKN +SCF+P
Sbjct:   111 TRKGMWVFDY---PDPDGLGLPNLSKYRIRIIDWIHAVLSVLVFGAVALRDKNAVSCFYP 167

Query:   191 TPKHETQEVLDIVPVGIGLICSLLFVIFPTRRHGIGYPIT 230
              P+ ET++VLDIVP+G+G+IC +LF++FP RRHGIGYP+T
Sbjct:   168 APEQETKKVLDIVPMGVGVICGMLFLVFPARRHGIGYPVT 207

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2076894 AT3G02430 "AT3G02430" [Arabidopsis thaliana (taxid:3702)]

 Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
 Identities = 82/160 (51%), Positives = 105/160 (65%)

Query:    71 GTLLAFQLLTPIFTNNGSCDAATGPXXXXXXXXXXXXXXXXSFTDSVKSSSSGQVYYGFA 130
             GTLLAFQLLTP+FT+NG CD AT                  SFTDSVK+   G +Y+GF 
Sbjct:    58 GTLLAFQLLTPVFTSNGVCDHATRFLTAVLLFLLAASCFVSSFTDSVKADD-GTIYFGFV 116

Query:   131 TFKGLFLFDYIQNPNASDHDLPDLIKYRIRFIDGVHXXXXXXXXXXXXXRDKNVLSCFFP 190
             TFKG+++ DY   P+ S   LPDL KYR+RF+D +H             RDK +  CF+P
Sbjct:   117 TFKGMWVVDY---PDPSGLGLPDLAKYRMRFVDWIHATLSVLVFGAVALRDKYITDCFYP 173

Query:   191 TPKHETQEVLDIVPVGIGLICSLLFVIFPTRRHGIGYPIT 230
             +P+ ET+ VLDIVPVG+G++CSLLF++FP RRHGIGY +T
Sbjct:   174 SPEAETKHVLDIVPVGVGVMCSLLFMVFPARRHGIGYLVT 213

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:505006493 AT4G18425 "AT4G18425" [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 65/162 (40%), Positives = 88/162 (54%)

Query:    71 GTLLAFQLLTPIFTNNGSCDAATGPXXXXXXXXXXXXXXXXSFTDSVKSSSSGQVYYGFA 130
             GT+LAFQLL+PIF+N G CD  +                  SFTDS K  + G + YG A
Sbjct:    58 GTVLAFQLLSPIFSNGGQCDLVSKIMTSTLVAICGFSCFILSFTDSYKDKN-GTICYGLA 116

Query:   131 TFKGLFLFDYIQNPNASDHDLP-DLIK-YRIRFIDGVHXXXXXXXXXXXXXRDKNVLSCF 188
             T  G ++ D           LP +L K Y++RFID VH              D+N ++CF
Sbjct:   117 TIHGFWIID-------GSTTLPQELSKRYKLRFIDFVHAFMSLFVFGAVVLFDRNAVNCF 169

Query:   189 FPTPKHETQEVLDIVPVGIGLICSLLFVIFPTRRHGIGYPIT 230
             FP+P  E  EVL  +PVG+G+  S+LF  FPT R+GIG+P++
Sbjct:   170 FPSPSAEALEVLTALPVGVGVFSSMLFATFPTTRNGIGFPLS 211

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:2161393 AT5G46090 "AT5G46090" [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 65/162 (40%), Positives = 88/162 (54%)

Query:    71 GTLLAFQLLTPIFTNNGSCDAATGPXXXXXXXXXXXXXXXXSFTDSVKSSSSGQVYYGFA 130
             GT+LAFQ+L+PI TN G CD  +                  SFTDS K  + G V YGFA
Sbjct:    59 GTVLAFQILSPICTNVGRCDLTSRFMTALLVSICGFSCFILSFTDSYKDLN-GSVCYGFA 117

Query:   131 TFKGLFLFDYIQNPNASDHDLP-DLIK-YRIRFIDGVHXXXXXXXXXXXXXRDKNVLSCF 188
             T  G ++ D           LP +L K Y++RFID VH              D+NV++CF
Sbjct:   118 TIHGFWIID-------GSATLPQELSKSYKLRFIDFVHAIMSFLVFGAVVLFDQNVVNCF 170

Query:   189 FPTPKHETQEVLDIVPVGIGLICSLLFVIFPTRRHGIGYPIT 230
             +P P  E  E+L  +PV +G+ CS++F  FPT RHGIG+P++
Sbjct:   171 YPEPSAEVVELLTTLPVAVGVFCSMVFAKFPTTRHGIGFPLS 212

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:1009023066 AT1G09157 "AT1G09157" [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 49/163 (30%), Positives = 80/163 (49%)

Query:    71 GTLLAFQLLTPIFTNNGSCDAATGPXXXXXXXXXXXXXXXXSFTDSVKSSSSGQVYYGFA 130
             GTLL F+++ P    +G C+                      FTDS K+S  G++YYGF 
Sbjct:    78 GTLLMFEMVLPTIYRDGDCNGINTLMIHLLLLLCAMSCFFFHFTDSFKASD-GKIYYGFV 136

Query:   131 TFKGLFLFDYIQNPN------ASDHDLPDLI-KYRIRFIDGVHXXXXXXXXXXXXXRDKN 183
             T +GL +F    +P        ++ ++P    +Y++R  D VH              D+ 
Sbjct:   137 TPRGLAVFMKPPSPGFGGGDVIAEKEIPVTDERYKLRVNDFVHSVMSVLVFMAIAFSDRR 196

Query:   184 VLSCFFPTPKHETQEVLDIVPVGIGLICSLLFVIFPTRRHGIG 226
             V  C FP  + E  +V++  P+ +G++CS LF++FPT R+G+G
Sbjct:   197 VTGCLFPGKEKEMDQVMESFPLMVGIVCSALFLVFPTSRYGVG 239

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:2164850 DAU2 "AT5G39650" [Arabidopsis thaliana (taxid:3702)]

 Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
 Identities = 48/163 (29%), Positives = 78/163 (47%)

Query:    71 GTLLAFQLLTPIFTNNGSCDAATGPXXXXXXXXXXXXXXXXSFTDSVKSSSSGQVYYGFA 130
             GTLL F+++ P    +G C+                      FTDS K+S  G++YYGF 
Sbjct:    79 GTLLMFEMVLPSIYRDGDCNGINTLMIHLLLLLCAMSCFFFHFTDSFKASD-GKIYYGFV 137

Query:   131 TFKGLFLFDYIQNPN------ASDHDLPDLI-KYRIRFIDGVHXXXXXXXXXXXXXRDKN 183
             T +GL +F     P        ++ ++P    +Y++   D VH              D+ 
Sbjct:   138 TPRGLAVFMKPPPPEFGGGDVIAEAEIPVTDDRYKLTVNDFVHAVMSVLVFMAIAFSDRR 197

Query:   184 VLSCFFPTPKHETQEVLDIVPVGIGLICSLLFVIFPTRRHGIG 226
             V  C FP  + E  +V++  P+ +G++CS LF++FPT R+G+G
Sbjct:   198 VTGCLFPGKEKEMDQVMESFPIMVGIVCSALFLVFPTTRYGVG 240

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0048235 "pollen sperm cell differentiation" evidence=IEP

TAIR|locus:2089865 DMP2 "AT3G21550" [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 53/158 (33%), Positives = 72/158 (45%)

Query:    71 GTLLAFQLLTPIFTNNGSCDAATGPXXXXXXXXXXXXXXXXSFTDSVKSSSSGQVYYGFA 130
             GT+  FQ L P+ TNNG C                       FTDS ++   G V+YG A
Sbjct:    26 GTVFLFQFLNPVLTNNGHCLLINKYLTGVLIVICAFSCCFTCFTDSYRTRD-GYVHYGVA 84

Query:   131 TFKGLFLFDYIQNPNASDHDLPDLIKYRIRFIDGVHXXXXXXXXXXXXXRDKNVLSCFFP 190
             T KGL+       P++S  DL      R+R  D VH              D N ++CF+P
Sbjct:    85 TVKGLW-------PDSSSVDLSSK---RLRVGDFVHAFFSLIVFSVISLLDANTVNCFYP 134

Query:   191 TPKHETQEVLDIVPVGIGLICSLLFVIFPTRRHGIGYP 228
                   +  L ++P  IG+I   +F +FP+RRHGIG P
Sbjct:   135 GFGSAGKIFLMVLPPVIGVISGAVFTVFPSRRHGIGNP 172

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:2089915 DMP1 "AT3G21520" [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 52/161 (32%), Positives = 73/161 (45%)

Query:    71 GTLLAFQLLTPIFTNNGSCDAATGPXXXXXXXXXXXXXXXXSFTDSVKSSSSGQVYYGFA 130
             GTL  + LL P+ TN+G C                       FTDS K    G   +G  
Sbjct:    40 GTLFIYLLLNPVLTNDGECSTGNKVMSSILVALCSFSCVFSCFTDSFKGVD-GSRKFGIV 98

Query:   131 TFKGLFLFDYIQNPNASDHDLPDLIKYRIRFIDGVHXXXXXXXXXXXXXRDKNVLSCFFP 190
             T KGL+ +     P + D     L KY++R  D VH              D N  SCF+P
Sbjct:    99 TKKGLWTY---AEPGSVD-----LSKYKLRIADFVHAGFVLAVFGTLVLLDANTASCFYP 150

Query:   191 TPKHETQEVLDI-VPVGIGLICSLLFVIFPTRRHGIGY-PI 229
               + ETQ+ L + +P  +G+  + +F +FP++R GIGY PI
Sbjct:   151 RFR-ETQKTLVMALPPAVGVASATIFALFPSKRSGIGYAPI 190

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0010256 "endomembrane system organization" evidence=IMP

TAIR|locus:504955516 DMP7 "AT4G28485" [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 39/104 (37%), Positives = 55/104 (52%)

Query:   127 YGFATFKGLFLFDYIQNPNASDHDLPDLIKYRIRFIDGVHXXXXXXXXXXXXXRDKNVLS 186
             YG AT+ GL + D        + +     KY+++ +D +H              D+NV  
Sbjct:    65 YGLATWSGLLVMDGSITLTEEEKE-----KYKLKILDFIHAIMSMLVFFAVSMFDQNVTR 119

Query:   187 CFFPTPKHETQEVLDIVPVGIGLICSLLFVIFPTRRHGIGYPIT 230
             C FP P  ET+E+L  +P  IG+IC   F+ FPTRRHGIG P+T
Sbjct:   120 CLFPVPSEETKEILTSLPFVIGVICGAFFLAFPTRRHGIGSPLT 163

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2146380 AT5G27370 "AT5G27370" [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 47/166 (28%), Positives = 64/166 (38%)

Query:    71 GTLLAFQLLTPIFTNNGSCD--AATGPXXXXXXXXXXXXXXXXSFTDSVKSSSSGQVYYG 128
             GT L F+ L P F+N G C+                       SFTDS      G++YYG
Sbjct:    22 GTALIFETLLPSFSNGGECNNKPVNKLLTITLISFCAAACFFSSFTDSYVGQD-GRIYYG 80

Query:   129 FATFKGLFLF-DYIQNPNASDHDLP-DLI-KYRIRFIDGVHXXXXXXXXXXXXXRDKNVL 185
              AT  GL +  DY       +  L  D   +Y++ F+D VH                +  
Sbjct:    81 IATSNGLHILNDYPDEGYDPESGLTADKRERYKLSFVDFVHAFVSVIVFLALAVESSDFR 140

Query:   186 SCFFPTPKHET---QEVLDI--VPVGIGLICSLLFVIFPTRRHGIG 226
              C  P     +     VL I    V +  + S  F IFP++R GIG
Sbjct:   141 RCLLPEDDENSWGGHFVLMIKYFAVMVLTMASFFFAIFPSKRRGIG 186


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.144   0.448    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      234       139   0.00091  102 3  11 22  0.39    31
                                                     30  0.46    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  543 (58 KB)
  Total size of DFA:  129 KB (2083 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:01
  No. of threads or processors used:  24
  Search cpu time:  11.02u 0.10s 11.12t   Elapsed:  00:00:01
  Total cpu time:  11.02u 0.10s 11.12t   Elapsed:  00:00:02
  Start:  Sat May 11 08:04:55 2013   End:  Sat May 11 08:04:57 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	234
pfam05078	169	pfam05078, DUF679, Protein of unknown function (DU	2e-82
PTZ00395	1560	PTZ00395, PTZ00395, Sec24-related protein; Provisi	0.004

>gnl|CDD|147322 pfam05078, DUF679, Protein of unknown function (DUF679)

 Score =  242 bits (621), Expect = 2e-82
 Identities = 98/170 (57%), Positives = 122/170 (71%), Gaps = 1/170 (0%)

Query: 58  LTSTANLANLLPTGTLLAFQLLTPIFTNNGSCDAATGPLTLLLLLLLAASCLLASFTDSV 117
           L+STANLA LLPTGT+LAFQ L+P FTN+G CDAA   LT  L+ L AASC   SFTDS 
Sbjct: 1   LSSTANLAKLLPTGTVLAFQALSPSFTNHGECDAANRVLTAALVALCAASCFFFSFTDSY 60

Query: 118 KSSSSGQVYYGFATFKGLFLFDYIQNPNASDHDLPDLIKYRIRFIDGVHAVSSVLVFAAV 177
                G+VYYG AT +GL++F+Y       D    DL +YR+RF+D VHA  SVLVF AV
Sbjct: 61  VGPD-GKVYYGVATPRGLWVFNYEGGRGGGDLPQRDLSRYRLRFLDFVHAFFSVLVFLAV 119

Query: 178 ALRDKNVLSCFFPTPKHETQEVLDIVPVGIGLICSLLFVIFPTRRHGIGY 227
           AL D NV+SCF+P P  ET+EVL  +P+G+G++ S +F++FPT RHGIGY
Sbjct: 120 ALSDANVVSCFYPGPGEETKEVLTNLPLGVGVVSSFVFMVFPTTRHGIGY 169

This family contains several uncharacterized plant proteins. Length = 169

>gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional

 Score = 37.7 bits (87), Expect = 0.004
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 7   PTTSSEQQQPPISSAQSSTSPTSITPTATTPATSIPPSSSTSLSRRALSQTLTSTANLAN 66
             ++     P  ++A +S +P +  P + TP ++ PP+S+   S    S T  S A L+N
Sbjct: 413 GYSNPGNSNPGYNNAPNSNTPYNNPPNSNTPYSN-PPNSNPPYSNLPYSNTPYSNAPLSN 471

Query: 67  LLPT 70
             P+
Sbjct: 472 APPS 475

Length = 1560

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	234
PF05078	170	DUF679: Protein of unknown function (DUF679); Inte	100.0

>PF05078 DUF679: Protein of unknown function (DUF679); InterPro: IPR007770 This family contains uncharacterised plant proteins of unknown function

Probab=100.00  E-value=3.3e-85  Score=556.16  Aligned_cols=169  Identities=62%  Similarity=1.020  Sum_probs=160.7

Q ss_pred             HhhhhhhhccCChhhHHHHHhhccccccCCcccCchhhHHHHHHHHHhhhhhhcccccceeeCCCCcEEEEEEecccccc
Q 048572           58 LTSTANLANLLPTGTLLAFQLLTPIFTNNGSCDAATGPLTLLLLLLLAASCLLASFTDSVKSSSSGQVYYGFATFKGLFL  137 (234)
Q Consensus        58 lssta~LakLLPTGTvLaFQ~LsP~fTN~G~C~~~nr~Lt~~Ll~lca~sCff~sFTDS~~~~~dGkvyYG~AT~~Glw~  137 (234)
                      |+++|||+|||||||||+||+|+|+|||||+|+++|||||++||++||++|||+||||||+| +|||+|||+||+||||+
T Consensus         1 ls~ta~La~LLPTGTvlaFq~L~P~~Tn~G~C~~~nr~lt~~Ll~lca~sC~f~sFTDS~~~-~dGkvyYG~aT~~Gl~~   79 (170)
T PF05078_consen    1 LSSTANLAKLLPTGTVLAFQILSPSFTNNGECDTANRWLTAALLALCAASCFFFSFTDSFRG-SDGKVYYGFATPRGLWV   79 (170)
T ss_pred             CccHHHHHHhCcchHHHHHHHhhhhcccCCccCcchHHHHHHHHHHHHHHHHHeeecceeEC-CCCCEEEEEEEccccee
Confidence            68999999999999999999999999999999999999999999999999999999999999 99999999999999999


Q ss_pred             ccCCCCCCC-CCCCCCccccceeeecceehhhHHHHHHHhhHhccCCcccccCCCCCccHHHHHHhhhhHHHHhhheeee
Q 048572          138 FDYIQNPNA-SDHDLPDLIKYRIRFIDGVHAVSSVLVFAAVALRDKNVLSCFFPTPKHETQEVLDIVPVGIGLICSLLFV  216 (234)
Q Consensus       138 f~~~~~p~~-~~~~~~~~skyrLr~~DfVHA~lS~~VF~avAl~D~nVv~CffP~~~~~~~evl~~lPl~vG~l~S~vF~  216 (234)
                      ||+++..++ +..+.++++||||||+|||||+||++||++||++|+|||+||||.+++|+||+|++||++||++||+|||
T Consensus        80 f~~~~~~~g~~~~~~~~~~~yrlr~~DfvHA~lS~~VF~aval~d~~v~~Cf~P~~~~~~~~~l~~lP~~vG~~~S~vF~  159 (170)
T PF05078_consen   80 FNYPGPEEGGGELKPRDLSKYRLRFIDFVHAFLSVVVFLAVALSDQNVVSCFFPSPSSETKEVLMNLPLGVGVLCSMVFM  159 (170)
T ss_pred             cCCCCccccccCCCccccccceEehhhhhHHHHHHHHHHHhheeCCCcceecCCCCchhHHHHHHHhHHHHHHhHeeEEE
Confidence            998554322 2334579999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EccCCCcccCC
Q 048572          217 IFPTRRHGIGY  227 (234)
Q Consensus       217 iFPt~RhGIGy  227 (234)
                      +|||+||||||
T Consensus       160 ~FPt~R~GIGy  170 (170)
T PF05078_consen  160 IFPTTRHGIGY  170 (170)
T ss_pred             ECCCCCCCCCC
Confidence            99999999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	234
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 3e-04
 Identities = 37/198 (18%), Positives = 61/198 (30%), Gaps = 35/198 (17%)

Query: 51  RRALSQTLTSTANLA--NLLPTG-TLLAFQLLT----------PIF-TNNGSCDAATGPL 96
           R+AL + L    N+    +L +G T +A  +             IF  N  +C++    L
Sbjct: 141 RQALLE-LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199

Query: 97  TLLLLLLLAASCLLASFTDSVKS--SSSGQVYYGFATF-------KGLFLFDYIQNP--- 144
            +L  LL        S +D   +       +                L +   +QN    
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW 259

Query: 145 NASDHDLPDLIKYR----IRFIDGVHAVSSVLVFAAVALRDKNVLSCFFPTPKHETQ--- 197
           NA +     L+  R      F+         L   ++ L    V S          Q   
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319

Query: 198 -EVLDIVPVGIGLICSLL 214
            EVL   P  + +I   +
Sbjct: 320 REVLTTNPRRLSIIAESI 337

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 4e-04
 Identities = 16/95 (16%), Positives = 31/95 (32%), Gaps = 28/95 (29%)

Query: 129 FATFKGLFL-FDYIQN-----------PNASDHDLPDLIKYRIRFIDGVHAVSSVLVFAA 176
              F+ +FL F +++              +  + L  L  Y+  +I         LV   
Sbjct: 490 MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK-PYICDNDPKYERLV--- 545

Query: 177 VALRDKNVLSCFFPTPKHETQ----EVLDIVPVGI 207
                 N +  F   PK E      +  D++ + +
Sbjct: 546 ------NAILDFL--PKIEENLICSKYTDLLRIAL 572

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00