Citrus Sinensis ID: 048578
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 519 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FJY7 | 620 | Pentatricopeptide repeat- | yes | no | 0.921 | 0.770 | 0.399 | 1e-110 | |
| A8MQA3 | 595 | Pentatricopeptide repeat- | no | no | 0.921 | 0.803 | 0.402 | 1e-107 | |
| Q9FIF7 | 544 | Putative pentatricopeptid | no | no | 0.924 | 0.882 | 0.370 | 1e-100 | |
| Q9FI80 | 646 | Pentatricopeptide repeat- | no | no | 0.917 | 0.736 | 0.363 | 3e-99 | |
| Q9SIL5 | 534 | Pentatricopeptide repeat- | no | no | 0.899 | 0.874 | 0.349 | 6e-98 | |
| Q9FG16 | 622 | Pentatricopeptide repeat- | no | no | 0.890 | 0.742 | 0.389 | 5e-95 | |
| Q9SJG6 | 559 | Pentatricopeptide repeat- | no | no | 0.911 | 0.846 | 0.372 | 7e-95 | |
| Q9C6T2 | 606 | Pentatricopeptide repeat- | no | no | 0.982 | 0.841 | 0.366 | 1e-93 | |
| Q8LK93 | 603 | Pentatricopeptide repeat- | no | no | 0.907 | 0.781 | 0.360 | 2e-92 | |
| Q0WQW5 | 638 | Pentatricopeptide repeat- | no | no | 0.940 | 0.764 | 0.363 | 3e-92 |
| >sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 399 bits (1025), Expect = e-110, Method: Compositional matrix adjust.
Identities = 206/516 (39%), Positives = 305/516 (59%), Gaps = 38/516 (7%)
Query: 37 LQKCTHLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIINPST 96
LQ+C+ + KQ+HA+++K + + T+ S +S + YA +VF+ P T
Sbjct: 21 LQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDT 80
Query: 97 FAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDL---RQVKGVHSL 153
F +N +IRG++ + R + LY +M+ + +++T+P LLKAC +L + +H+
Sbjct: 81 FLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQ 140
Query: 154 VVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFD------------------------- 188
+ K + + ++++ LI Y G+ K A LLFD
Sbjct: 141 ITKL-GYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDI 199
Query: 189 ------QMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACAN 242
+M EKN ++WT MI+G+V+ +E + LF +M++S VE + ++L + LSACA
Sbjct: 200 ALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQ 259
Query: 243 LGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSI 302
LGA E GKW+H ++NK I ++ LG L DMYAKCG +EEAL VFK + +K+V W ++
Sbjct: 260 LGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTAL 319
Query: 303 IGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYK 362
I G A HG G EA+ F +MQ GIKP+ +T AVLTACS+ GL+E+GK IFY+M RDY
Sbjct: 320 ISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYN 379
Query: 363 VEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVELAE 422
++P ++HYGC+VDLL RA LLDEA I+ MP++PNAV+WG+LL AC N+EL E
Sbjct: 380 LKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIH---KNIELGE 436
Query: 423 IAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPGCSVIEINDVV 482
E LI ++P++ G YV +NI+A +WD A + RRLMKE+ + K PGCS I +
Sbjct: 437 EIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTT 496
Query: 483 HEFMVGDGRHPCSEEIYSMLEYVAISLREECYAARM 518
HEF+ GD HP E+I S + L E Y +
Sbjct: 497 HEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPEL 532
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 387 bits (995), Expect = e-107, Method: Compositional matrix adjust.
Identities = 203/504 (40%), Positives = 321/504 (63%), Gaps = 26/504 (5%)
Query: 34 LPLLQKCTHLVQ---------FKQVHAQIIKASFDNRTISDTQLAK----LIESLVNSSQ 80
LP+++KC +L+Q +Q+HA I+ +ISD +L K + SL +
Sbjct: 12 LPMVEKCINLLQTYGVSSITKLRQIHAFSIRHGV---SISDAELGKHLIFYLVSLPSPPP 68
Query: 81 IAYAHLVFNQIINP-STFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGL-DPDSFTYPILL 138
++YAH VF++I P + F +NT+IRGYAE G LY +M +GL +PD+ TYP L+
Sbjct: 69 MSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLI 128
Query: 139 KAC---GDLRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNV 195
KA D+R + +HS+V++S F S+I+ L+ Y N GDV SA +FD+M EK++
Sbjct: 129 KAVTTMADVRLGETIHSVVIRS-GFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDL 187
Query: 196 VTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEF 255
V W ++ING + E + L+ +M G++ + T+VS+LSACA +GA LGK VH +
Sbjct: 188 VAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVY 247
Query: 256 VNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEA 315
+ K + N L D+YA+CG +EEA +F +++KN +W S+I GLA++G G+EA
Sbjct: 248 MIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEA 307
Query: 316 VKMFWQMQMS-GIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLV 374
+++F M+ + G+ P ++T + +L ACSH G++++G E F MR +YK+EP ++H+GC+V
Sbjct: 308 IELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMV 367
Query: 375 DLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPF 434
DLL RA + +AYE I++MPM+PN V+W +LL AC D +LAE A ++++LEP
Sbjct: 368 DLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDS---DLAEFARIQILQLEPN 424
Query: 435 NDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPGCSVIEINDVVHEFMVGDGRHPC 494
+ G+YVL+SN+YA++ +W D K+R+ M + K PG S++E+ + VHEF++GD HP
Sbjct: 425 HSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQ 484
Query: 495 SEEIYSMLEYVAISLREECYAARM 518
S+ IY+ L+ + LR E Y ++
Sbjct: 485 SDAIYAKLKEMTGRLRSEGYVPQI 508
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIF7|PP435_ARATH Putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E41 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 366 bits (940), Expect = e-100, Method: Compositional matrix adjust.
Identities = 193/521 (37%), Positives = 308/521 (59%), Gaps = 41/521 (7%)
Query: 23 NSNTATKSHHH--LPLLQKCTHLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQ 80
+SNT S + +L+ C ++ +HA+II+ D +L ++ +L
Sbjct: 20 DSNTLRLSRRKTLISVLRSCKNIAHVPSIHAKIIRTFHDQDAFVVFELIRVCSTL---DS 76
Query: 81 IAYAHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKA 140
+ YA+ VF+ + NP+ + + +I G+ +G G+ LY +MI N + PD++ +LKA
Sbjct: 77 VDYAYDVFSYVSNPNVYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVITSVLKA 136
Query: 141 CGDLRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTE-------- 192
C DL+ + +H+ V+K F S +++ Y G++ +A+ +FD+M +
Sbjct: 137 C-DLKVCREIHAQVLK-LGFGSSRSVGLKMMEIYGKSGELVNAKKMFDEMPDRDHVAATV 194
Query: 193 -----------------------KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVN 229
K+ V WTAMI+G V+ K + ++LFR+M+ V N
Sbjct: 195 MINCYSECGFIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQMENVSAN 254
Query: 230 ELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFK 289
E T V VLSAC++LGA ELG+WVH FV + L++ +G AL +MY++CG I EA RVF+
Sbjct: 255 EFTAVCVLSACSDLGALELGRWVHSFVENQRMELSNFVGNALINMYSRCGDINEARRVFR 314
Query: 290 IVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEK 349
++ +K+V ++N++I GLA+HG EA+ F M G +P+ VTL+A+L ACSH GL++
Sbjct: 315 VMRDKDVISYNTMISGLAMHGASVEAINEFRDMVNRGFRPNQVTLVALLNACSHGGLLDI 374
Query: 350 GKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTAC 409
G E+F +M+R + VEP ++HYGC+VDLL R L+EAY I N+P+EP+ ++ G+LL+AC
Sbjct: 375 GLEVFNSMKRVFNVEPQIEHYGCIVDLLGRVGRLEEAYRFIENIPIEPDHIMLGTLLSAC 434
Query: 410 ASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVK 469
N+EL E +RL + E + G YVL+SN+YA+ +W ++ ++R M++ I K
Sbjct: 435 KIH---GNMELGEKIAKRLFESENPDSGTYVLLSNLYASSGKWKESTEIRESMRDSGIEK 491
Query: 470 NPGCSVIEINDVVHEFMVGDGRHPCSEEIYSMLEYVAISLR 510
PGCS IE+++ +HEF+VGD HP E IY L+ + LR
Sbjct: 492 EPGCSTIEVDNQIHEFLVGDIAHPHKEAIYQRLQELNRILR 532
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 362 bits (929), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 194/534 (36%), Positives = 316/534 (59%), Gaps = 58/534 (10%)
Query: 34 LPLLQKCTHLVQFKQVHAQIIKASFDNRTISDTQLAKL-IESLVNSSQIAYAHLVFNQII 92
P + C + Q+HA IK+ T++ ++ + S ++ + YAH +FNQ+
Sbjct: 27 FPQINNCRTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMP 86
Query: 93 NPSTFAFNTVIRGYAEAGLGHR--GIQLYTQMIGNG-LDPDSFTYPILLKAC---GDLRQ 146
+ F++NT+IRG++E+ I L+ +M+ + ++P+ FT+P +LKAC G +++
Sbjct: 87 QRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQE 146
Query: 147 VKGVHSLVVK----SKDFNSVIHSLTRL-----------ITFYCN--------------- 176
K +H L +K +F V+ +L R+ + FY N
Sbjct: 147 GKQIHGLALKYGFGGDEF--VMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKR 204
Query: 177 ----------------FGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRK 220
GD K+A++LFD+M +++VV+W MI+G+ +++ +++FR+
Sbjct: 205 DGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFRE 264
Query: 221 MRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGY 280
M+ + N +TLVSVL A + LG+ ELG+W+H + + I ++D LG+AL DMY+KCG
Sbjct: 265 MKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGI 324
Query: 281 IEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTA 340
IE+A+ VF+ + +NV TW+++I G AIHG +A+ F +M+ +G++P DV I +LTA
Sbjct: 325 IEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTA 384
Query: 341 CSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAV 400
CSH GL+E+G+ F M +EP ++HYGC+VDLL R+ LLDEA E I NMP++P+ V
Sbjct: 385 CSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDV 444
Query: 401 LWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRR 460
+W +LL AC NVE+ + L+ + P + G YV +SN+YA++ W + +MR
Sbjct: 445 IWKALLGACRMQ---GNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRL 501
Query: 461 LMKERNIVKNPGCSVIEINDVVHEFMVGDGRHPCSEEIYSMLEYVAISLREECY 514
MKE++I K+PGCS+I+I+ V+HEF+V D HP ++EI SML ++ LR Y
Sbjct: 502 RMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGY 555
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 358 bits (919), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 177/507 (34%), Positives = 303/507 (59%), Gaps = 40/507 (7%)
Query: 31 HHHLPLLQKCTHLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQ 90
++ +P LQ+ ++K+++A II + T++ + + + YA +FNQ
Sbjct: 11 NYFIPFLQRVKSRNEWKKINASIIIHGLSQSSFMVTKMVDFCDKI---EDMDYATRLFNQ 67
Query: 91 IINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLD-PDSFTYPILLKACGDL----- 144
+ NP+ F +N++IR Y L I++Y Q++ + PD FT+P + K+C L
Sbjct: 68 VSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYL 127
Query: 145 -RQVKG-----------------------VHSLVVKSKDFNSV----IHSLTRLITFYCN 176
+QV G LV K F+ + + S L++ Y
Sbjct: 128 GKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYAR 187
Query: 177 FGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSV 236
G +K A+ LF M +K +V+WTAMI+G+ Y E +D FR+M+ +G+E +E++L+SV
Sbjct: 188 LGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISV 247
Query: 237 LSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNV 296
L +CA LG+ ELGKW+H + + + + AL +MY+KCG I +A+++F + K+V
Sbjct: 248 LPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDV 307
Query: 297 CTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYN 356
+W+++I G A HG A++ F +MQ + +KP+ +T + +L+ACSH G+ ++G F
Sbjct: 308 ISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLRYFDM 367
Query: 357 MRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGA 416
MR+DY++EP ++HYGCL+D+L RA L+ A E+ + MPM+P++ +WGSLL++C +
Sbjct: 368 MRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMKPDSKIWGSLLSSCRTP---G 424
Query: 417 NVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPGCSVI 476
N+++A +AM+ L++LEP + GNYVL++NIYA +W+D ++R++++ N+ K PG S+I
Sbjct: 425 NLDVALVAMDHLVELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIRNENMKKTPGGSLI 484
Query: 477 EINDVVHEFMVGDGRHPCSEEIYSMLE 503
E+N++V EF+ GD P EI +L+
Sbjct: 485 EVNNIVQEFVSGDNSKPFWTEISIVLQ 511
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 348 bits (894), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 199/511 (38%), Positives = 297/511 (58%), Gaps = 49/511 (9%)
Query: 25 NTATKSHHHLPLLQKCTHLVQFKQVHAQIIKASFDNRTISDTQLA-KLIESLVNSSQ--- 80
NT H L LLQ C+ K +H +++ ISD +A +L+ V+ S
Sbjct: 7 NTLRFKHPKLALLQSCSSFSDLKIIHGFLLRTHL----ISDVFVASRLLALCVDDSTFNK 62
Query: 81 ----IAYAHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPI 136
+ YA+ +F+QI NP+ F FN +IR ++ + YTQM+ + + PD+ T+P
Sbjct: 63 PTNLLGYAYGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPF 122
Query: 137 LLKACGDLRQV---KGVHSLVVK---SKDF---NSVIH---------------------- 165
L+KA ++ V + HS +V+ D NS++H
Sbjct: 123 LIKASSEMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRD 182
Query: 166 --SLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRD 223
S T ++ YC G V++A+ +FD+M +N+ TW+ MING+ K + + IDLF M+
Sbjct: 183 VVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKR 242
Query: 224 SGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEE 283
GV NE +VSV+S+CA+LGA E G+ +E+V K+ + +N LG AL DM+ +CG IE+
Sbjct: 243 EGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEK 302
Query: 284 ALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSH 343
A+ VF+ + E + +W+SII GLA+HG +A+ F QM G P DVT AVL+ACSH
Sbjct: 303 AIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSH 362
Query: 344 AGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWG 403
GL+EKG EI+ NM++D+ +EP ++HYGC+VD+L RA L EA I M ++PNA + G
Sbjct: 363 GGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILG 422
Query: 404 SLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMK 463
+LL AC N E+AE LIK++P + G YVL+SNIYA QWD +R +MK
Sbjct: 423 ALLGACKIYK---NTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMK 479
Query: 464 ERNIVKNPGCSVIEINDVVHEFMVGDG-RHP 493
E+ + K PG S+IEI+ +++F +GD +HP
Sbjct: 480 EKLVKKPPGWSLIEIDGKINKFTMGDDQKHP 510
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SJG6|PP200_ARATH Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E75 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 348 bits (892), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 193/518 (37%), Positives = 306/518 (59%), Gaps = 45/518 (8%)
Query: 24 SNTATKSHHHLPLLQ-KCTHLVQFKQVHAQIIKASFDNRTISDTQLAKLIESL--VNSSQ 80
S+ + + +L L+ +C+ + + KQ+HA +IK ISDT A + + + S
Sbjct: 18 SSGSLSGNTYLRLIDTQCSTMRELKQIHASLIKTGL----ISDTVTASRVLAFCCASPSD 73
Query: 81 IAYAHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMI--GNGLDPDSFTYPILL 138
+ YA+LVF +I + + F +NT+IRG++ + I ++ M+ + P TYP +
Sbjct: 74 MNYAYLVFTRINHKNPFVWNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVF 133
Query: 139 KACGDLRQVKG---VHSLVVK------SKDFNSVIH------------------------ 165
KA G L Q + +H +V+K S N+++H
Sbjct: 134 KAYGRLGQARDGRQLHGMVIKEGLEDDSFIRNTMLHMYVTCGCLIEAWRIFLGMIGFDVV 193
Query: 166 SLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSG 225
+ +I + G + AQ LFD+M ++N V+W +MI+G V+ +++ +D+FR+M++
Sbjct: 194 AWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKD 253
Query: 226 VEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEAL 285
V+ + T+VS+L+ACA LGASE G+W+HE++ +N LN + AL DMY KCG IEE L
Sbjct: 254 VKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGL 313
Query: 286 RVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAG 345
VF+ +K + WNS+I GLA +G E A+ +F +++ SG++PD V+ I VLTAC+H+G
Sbjct: 314 NVFECAPKKQLSCWNSMILGLANNGFEERAMDLFSELERSGLEPDSVSFIGVLTACAHSG 373
Query: 346 LIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSL 405
+ + E F M+ Y +EP++KHY +V++L A LL+EA +I+NMP+E + V+W SL
Sbjct: 374 EVHRADEFFRLMKEKYMIEPSIKHYTLMVNVLGGAGLLEEAEALIKNMPVEEDTVIWSSL 433
Query: 406 LTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKER 465
L+AC NVE+A+ A + L KL+P YVL+SN YA+ +++A + R LMKER
Sbjct: 434 LSACRKI---GNVEMAKRAAKCLKKLDPDETCGYVLLSNAYASYGLFEEAVEQRLLMKER 490
Query: 466 NIVKNPGCSVIEINDVVHEFMVGDGRHPCSEEIYSMLE 503
+ K GCS IE++ VHEF+ G HP S EIYS+L+
Sbjct: 491 QMEKEVGCSSIEVDFEVHEFISCGGTHPKSAEIYSLLD 528
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C6T2|PPR68_ARATH Pentatricopeptide repeat-containing protein At1g31920 OS=Arabidopsis thaliana GN=PCMP-H11 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 344 bits (882), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 191/521 (36%), Positives = 303/521 (58%), Gaps = 11/521 (2%)
Query: 1 MLKQLVPNSQLTHFTNSANSHKNSNTATKSHHHLPLLQKCTHLVQFKQVHAQIIKASFDN 60
M+K + S L + ++ + +N K L LL++C ++ +FKQVHA+ IK S
Sbjct: 1 MIKAPILQSLLASRDDLTHNPEVNNFGGKEQECLYLLKRCHNIDEFKQVHARFIKLSLFY 60
Query: 61 RTISDTQ--LAKLIESLVNSSQIAYAHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQL 118
+ LAK S +S + YA +F I +P TF FNT+IRGY +
Sbjct: 61 SSSFSASSVLAKCAHSGWENS-MNYAASIFRGIDDPCTFDFNTMIRGYVNVMSFEEALCF 119
Query: 119 YTQMIGNGLDPDSFTYPILLKACGDL---RQVKGVHSLVVKSKDFNSVIHSLTRLITFYC 175
Y +M+ G +PD+FTYP LLKAC L R+ K +H V K + + LI Y
Sbjct: 120 YNEMMQRGNEPDNFTYPCLLKACTRLKSIREGKQIHGQVFKL-GLEADVFVQNSLINMYG 178
Query: 176 NFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKM-RDSGVEVNELTLV 234
G+++ + +F+++ K +W++M++ + E + LFR M ++ ++ E +V
Sbjct: 179 RCGEMELSSAVFEKLESKTAASWSSMVSARAGMGMWSECLLLFRGMCSETNLKAEESGMV 238
Query: 235 SVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEK 294
S L ACAN GA LG +H F+ +N LN + +L DMY KCG +++AL +F+ + ++
Sbjct: 239 SALLACANTGALNLGMSIHGFLLRNISELNIIVQTSLVDMYVKCGCLDKALHIFQKMEKR 298
Query: 295 NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIF 354
N T++++I GLA+HG GE A++MF +M G++PD V ++VL ACSH+GL+++G+ +F
Sbjct: 299 NNLTYSAMISGLALHGEGESALRMFSKMIKEGLEPDHVVYVSVLNACSHSGLVKEGRRVF 358
Query: 355 YNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADD 414
M ++ KVEP +HYGCLVDLL RA LL+EA E I+++P+E N V+W + L+ C
Sbjct: 359 AEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEALETIQSIPIEKNDVIWRTFLSQCRVRQ- 417
Query: 415 GANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPGCS 474
N+EL +IA + L+KL N G+Y+L+SN+Y+ WDD + R + + + + PG S
Sbjct: 418 --NIELGQIAAQELLKLSSHNPGDYLLISNLYSQGQMWDDVARTRTEIAIKGLKQTPGFS 475
Query: 475 VIEINDVVHEFMVGDGRHPCSEEIYSMLEYVAISLREECYA 515
++E+ H F+ D HP +EIY ML + L+ E Y+
Sbjct: 476 IVELKGKTHRFVSQDRSHPKCKEIYKMLHQMEWQLKFEGYS 516
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980 OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 340 bits (872), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 175/485 (36%), Positives = 293/485 (60%), Gaps = 14/485 (2%)
Query: 36 LLQKCTHLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNS---SQIAYAHLVFNQII 92
L+ KC L + Q+ A IK+ ++ + +AKLI S S ++YA +F +
Sbjct: 35 LISKCNSLRELMQIQAYAIKSHIEDVSF----VAKLINFCTESPTESSMSYARHLFEAMS 90
Query: 93 NPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACG---DLRQVKG 149
P FN++ RGY+ L+ +++ +G+ PD++T+P LLKAC L + +
Sbjct: 91 EPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEGRQ 150
Query: 150 VHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQK 209
+H L +K + ++ LI Y DV SA+ +FD++ E VV + AMI G+ ++
Sbjct: 151 LHCLSMK-LGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRN 209
Query: 210 NYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGA 269
E + LFR+M+ ++ NE+TL+SVLS+CA LG+ +LGKW+H++ K+ K+
Sbjct: 210 RPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNT 269
Query: 270 ALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKP 329
AL DM+AKCG +++A+ +F+ + K+ W+++I A HG E+++ MF +M+ ++P
Sbjct: 270 ALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQP 329
Query: 330 DDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEV 389
D++T + +L ACSH G +E+G++ F M + + P++KHYG +VDLL RA L++AYE
Sbjct: 330 DEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEF 389
Query: 390 IRNMPMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAK 449
I +P+ P +LW LL AC+S + N++LAE ER+ +L+ + G+YV++SN+YA
Sbjct: 390 IDKLPISPTPMLWRILLAACSSHN---NLDLAEKVSERIFELDDSHGGDYVILSNLYARN 446
Query: 450 AQWDDAGKMRRLMKERNIVKNPGCSVIEINDVVHEFMVGDGRHPCSEEIYSMLEYVAISL 509
+W+ +R++MK+R VK PGCS IE+N+VVHEF GDG + +++ L+ + L
Sbjct: 447 KKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKEL 506
Query: 510 REECY 514
+ Y
Sbjct: 507 KLSGY 511
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WQW5|PPR85_ARATH Pentatricopeptide repeat-containing protein At1g59720, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 339 bits (869), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 186/512 (36%), Positives = 298/512 (58%), Gaps = 24/512 (4%)
Query: 23 NSNTATKSHHH---LPLLQKCTHLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSS 79
+ + +T +HH L + C+ + Q KQ+HA ++ ++ + K+++ + S
Sbjct: 38 SPSASTAGNHHQRIFSLAETCSDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFS 97
Query: 80 QIAYAHLVFNQIINPSTFAFNTVIRGYA-EAGLGHRGIQLYTQMIGNG-LDPDSFTYPIL 137
+ YA VF+ I N S+F +NT+IR A + LY +M+ G PD T+P +
Sbjct: 98 DVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFV 157
Query: 138 LKACG---DLRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKN 194
LKAC + K VH +VK F ++ LI Y + G + A+ +FD+M E++
Sbjct: 158 LKACAYIFGFSEGKQVHCQIVK-HGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERS 216
Query: 195 VVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHE 254
+V+W +MI+ V+ Y + LFR+M+ S E + T+ SVLSACA LG+ LG W H
Sbjct: 217 LVSWNSMIDALVRFGEYDSALQLFREMQRS-FEPDGYTMQSVLSACAGLGSLSLGTWAHA 275
Query: 255 FVNKNC---IILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGC 311
F+ + C + ++ + +L +MY KCG + A +VF+ + ++++ +WN++I G A HG
Sbjct: 276 FLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGR 335
Query: 312 GEEAVKMFWQM--QMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKH 369
EEA+ F +M + ++P+ VT + +L AC+H G + KG++ F M RDY +EP ++H
Sbjct: 336 AEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEH 395
Query: 370 YGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVELAEIAMERLI 429
YGC+VDL+ RA + EA +++ +MPM+P+AV+W SLL AC GA+VEL+E +I
Sbjct: 396 YGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCK--KGASVELSEEIARNII 453
Query: 430 KLEPFND-------GNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPGCSVIEINDVV 482
+ N+ G YVL+S +YA+ ++W+D G +R+LM E I K PGCS IEIN +
Sbjct: 454 GTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGIS 513
Query: 483 HEFMVGDGRHPCSEEIYSMLEYVAISLREECY 514
HEF GD HP +++IY L+ + LR Y
Sbjct: 514 HEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGY 545
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 519 | ||||||
| 225425100 | 622 | PREDICTED: pentatricopeptide repeat-cont | 0.946 | 0.789 | 0.388 | 1e-113 | |
| 147832325 | 622 | hypothetical protein VITISV_030261 [Viti | 0.946 | 0.789 | 0.386 | 1e-113 | |
| 297738270 | 574 | unnamed protein product [Vitis vinifera] | 0.913 | 0.825 | 0.394 | 1e-109 | |
| 15239979 | 620 | pentatricopeptide repeat-containing prot | 0.921 | 0.770 | 0.399 | 1e-108 | |
| 297738895 | 580 | unnamed protein product [Vitis vinifera] | 0.842 | 0.753 | 0.439 | 1e-106 | |
| 297797743 | 649 | pentatricopeptide repeat-containing prot | 0.909 | 0.727 | 0.396 | 1e-106 | |
| 359476084 | 541 | PREDICTED: pentatricopeptide repeat-cont | 0.907 | 0.870 | 0.378 | 1e-105 | |
| 224134923 | 635 | predicted protein [Populus trichocarpa] | 0.921 | 0.752 | 0.372 | 1e-105 | |
| 5262797 | 1495 | putative protein (fragment) [Arabidopsis | 0.921 | 0.319 | 0.402 | 1e-105 | |
| 224138230 | 617 | predicted protein [Populus trichocarpa] | 0.915 | 0.769 | 0.391 | 1e-105 |
| >gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 211/543 (38%), Positives = 330/543 (60%), Gaps = 52/543 (9%)
Query: 6 VPNSQLTHFTNSANSHKNSNTATKSHHHLPLLQKCTHLVQFKQVHAQIIKASFDNRTISD 65
P SQL+ +N+A + L LLQ+C+++ + +Q+H Q++K I
Sbjct: 7 TPTSQLSSESNAAQT-------------LHLLQRCSNMEELRQIHGQMLKTGLILDEIPA 53
Query: 66 TQLAKLIESLVNSSQIAYAHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGN 125
++L S NS +AYA VF++I P+TF +NT+IRGY+ + + LY M+ +
Sbjct: 54 SKLLAFCAS-PNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYH 112
Query: 126 GLDPDSFTYPILLKACGD---LRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKS 182
+ +++T+P LLKAC L + + +H+ ++K F S I++ L+ Y GD+KS
Sbjct: 113 SVPHNAYTFPFLLKACSSMSALEETQQIHAHIIK-MGFGSEIYTTNSLLNVYSKSGDIKS 171
Query: 183 AQLLFDQ-------------------------------MTEKNVVTWTAMINGHVKQKNY 211
A+LLFDQ M E+N+++WT+MI+G V
Sbjct: 172 ARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKP 231
Query: 212 REGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAAL 271
+E ++LF +M+ +G++++ + LVS L ACA+LG + GKW+H ++ K+ I ++ LG L
Sbjct: 232 KEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVL 291
Query: 272 TDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDD 331
DMYAKCG +EEA+ VF+ + EK V W ++I G AIHG G EA++ F +MQ +G++P+
Sbjct: 292 IDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQ 351
Query: 332 VTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIR 391
+T +LTACSHAGL+ + K +F +M R + +P+++HYGC+VDLL RA LL EA E+I
Sbjct: 352 MTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIE 411
Query: 392 NMPMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQ 451
NMP++PNA +WG+LL AC N+EL + + LI+++P + G Y+ +++I+AA +
Sbjct: 412 NMPVKPNAAIWGALLNAC---HIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAGE 468
Query: 452 WDDAGKMRRLMKERNIVKNPGCSVIEINDVVHEFMVGDGRHPCSEEIYSMLEYVAISLRE 511
W+ A ++RR MKE+ + K PGCSVI +N HEF+ GD HP +EI MLE + LRE
Sbjct: 469 WNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHPQIKEIDHMLEQIVERLRE 528
Query: 512 ECY 514
E Y
Sbjct: 529 EGY 531
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 210/543 (38%), Positives = 330/543 (60%), Gaps = 52/543 (9%)
Query: 6 VPNSQLTHFTNSANSHKNSNTATKSHHHLPLLQKCTHLVQFKQVHAQIIKASFDNRTISD 65
P SQL+ +N+A + L LLQ+C+++ + +Q+H Q++K I
Sbjct: 7 TPTSQLSSESNAAQT-------------LHLLQRCSNMEELRQIHGQMLKTGLILDEIPA 53
Query: 66 TQLAKLIESLVNSSQIAYAHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGN 125
++L S NS +AYA VF++I P+TF +NT+IRGY+ + + LY M+ +
Sbjct: 54 SKLLAFCAS-PNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYH 112
Query: 126 GLDPDSFTYPILLKACGDL---RQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKS 182
+ +++T+P LLKAC + + + +H+ ++K F S I++ L+ Y GD+KS
Sbjct: 113 SVPHNAYTFPFLLKACSSMSASEETQQIHAHIIK-MGFGSEIYTTNSLLNVYSKSGDIKS 171
Query: 183 AQLLFDQ-------------------------------MTEKNVVTWTAMINGHVKQKNY 211
A+LLFDQ M E+N+++WT+MI+G V
Sbjct: 172 ARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKP 231
Query: 212 REGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAAL 271
+E ++LF +M+ +G++++ + LVS L ACA+LG + GKW+H ++ K+ I ++ LG L
Sbjct: 232 KEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVL 291
Query: 272 TDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDD 331
DMYAKCG +EEA+ VF+ + EK V W ++I G AIHG G EA++ F +MQ +G++P+
Sbjct: 292 IDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQ 351
Query: 332 VTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIR 391
+T +LTACSHAGL+ + K +F +M R + +P+++HYGC+VDLL RA LL EA E+I
Sbjct: 352 MTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIE 411
Query: 392 NMPMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQ 451
NMP++PNA +WG+LL AC N+EL + + LI+++P + G Y+ +++I+AA +
Sbjct: 412 NMPVKPNAAIWGALLNAC---HIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAGE 468
Query: 452 WDDAGKMRRLMKERNIVKNPGCSVIEINDVVHEFMVGDGRHPCSEEIYSMLEYVAISLRE 511
W+ A ++RR MKE+ + K PGCSVI +N HEF+ GD HP +EI MLE + LRE
Sbjct: 469 WNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHPQIKEIDHMLEQIVERLRE 528
Query: 512 ECY 514
E Y
Sbjct: 529 EGY 531
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297738270|emb|CBI27471.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 202/512 (39%), Positives = 318/512 (62%), Gaps = 38/512 (7%)
Query: 6 VPNSQLTHFTNSANSHKNSNTATKSHHHLPLLQKCTHLVQFKQVHAQIIKASFDNRTISD 65
P SQL+ +N+A + L LLQ+C+++ + +Q+H Q++K I
Sbjct: 7 TPTSQLSSESNAAQT-------------LHLLQRCSNMEELRQIHGQMLKTGLILDEIPA 53
Query: 66 TQLAKLIESLVNSSQIAYAHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGN 125
++L S NS +AYA VF++I P+TF +NT+IRGY+ + + LY M+ +
Sbjct: 54 SKLLAFCAS-PNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYH 112
Query: 126 GLDPDSFTYPILLKACGD---LRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKS 182
+ +++T+P LLKAC L + + +H+ ++K F S I++ L+ Y GD+KS
Sbjct: 113 SVPHNAYTFPFLLKACSSMSALEETQQIHAHIIK-MGFGSEIYTTNSLLNVYSKSGDIKS 171
Query: 183 AQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACAN 242
A+LLFDQ+ +++ E ++LF +M+ +G++++ + LVS L ACA+
Sbjct: 172 ARLLFDQVDQRDT-----------------EALNLFHRMQTAGIKLDNVALVSTLQACAD 214
Query: 243 LGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSI 302
LG + GKW+H ++ K+ I ++ LG L DMYAKCG +EEA+ VF+ + EK V W ++
Sbjct: 215 LGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAM 274
Query: 303 IGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYK 362
I G AIHG G EA++ F +MQ +G++P+ +T +LTACSHAGL+ + K +F +M R +
Sbjct: 275 ISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHG 334
Query: 363 VEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVELAE 422
+P+++HYGC+VDLL RA LL EA E+I NMP++PNA +WG+LL AC N+EL +
Sbjct: 335 FKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNAC---HIHGNLELGK 391
Query: 423 IAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPGCSVIEINDVV 482
+ LI+++P + G Y+ +++I+AA +W+ A ++RR MKE+ + K PGCSVI +N
Sbjct: 392 QIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTA 451
Query: 483 HEFMVGDGRHPCSEEIYSMLEYVAISLREECY 514
HEF+ GD HP +EI MLE + LREE Y
Sbjct: 452 HEFLAGDESHPQIKEIDHMLEQIVERLREEGY 483
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520 gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana] gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 206/516 (39%), Positives = 305/516 (59%), Gaps = 38/516 (7%)
Query: 37 LQKCTHLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIINPST 96
LQ+C+ + KQ+HA+++K + + T+ S +S + YA +VF+ P T
Sbjct: 21 LQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDT 80
Query: 97 FAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDL---RQVKGVHSL 153
F +N +IRG++ + R + LY +M+ + +++T+P LLKAC +L + +H+
Sbjct: 81 FLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQ 140
Query: 154 VVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFD------------------------- 188
+ K + + ++++ LI Y G+ K A LLFD
Sbjct: 141 ITKL-GYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDI 199
Query: 189 ------QMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACAN 242
+M EKN ++WT MI+G+V+ +E + LF +M++S VE + ++L + LSACA
Sbjct: 200 ALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQ 259
Query: 243 LGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSI 302
LGA E GKW+H ++NK I ++ LG L DMYAKCG +EEAL VFK + +K+V W ++
Sbjct: 260 LGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTAL 319
Query: 303 IGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYK 362
I G A HG G EA+ F +MQ GIKP+ +T AVLTACS+ GL+E+GK IFY+M RDY
Sbjct: 320 ISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYN 379
Query: 363 VEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVELAE 422
++P ++HYGC+VDLL RA LLDEA I+ MP++PNAV+WG+LL AC N+EL E
Sbjct: 380 LKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIH---KNIELGE 436
Query: 423 IAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPGCSVIEINDVV 482
E LI ++P++ G YV +NI+A +WD A + RRLMKE+ + K PGCS I +
Sbjct: 437 EIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTT 496
Query: 483 HEFMVGDGRHPCSEEIYSMLEYVAISLREECYAARM 518
HEF+ GD HP E+I S + L E Y +
Sbjct: 497 HEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPEL 532
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 393 bits (1009), Expect = e-106, Method: Compositional matrix adjust.
Identities = 208/473 (43%), Positives = 292/473 (61%), Gaps = 36/473 (7%)
Query: 74 SLVNSSQIAYAHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFT 133
+L +S + YA LVFNQI NP+TF N++IRGY L + I Y M+ GLDPD FT
Sbjct: 21 ALHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFT 80
Query: 134 YPILLKACGDLRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEK 193
+P L K+CG L + K +H K F S + L+ Y N G + SA+ +FD+M K
Sbjct: 81 FPSLFKSCGVLCEGKQLHCHSTK-LGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNK 139
Query: 194 NVVTWTA--------------------------------MINGHVKQKNYREGIDLFRKM 221
+VV+W MINGHV+ +Y E + LF +M
Sbjct: 140 SVVSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEM 199
Query: 222 RDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYI 281
+ SGV+ +++T+ S+L AC +LGA ELGKW+H ++ K I ++ LG AL DMYAKCG I
Sbjct: 200 QLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSI 259
Query: 282 EEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTAC 341
E A+RVF+ + EK+V TW ++I GLA+ G G +A+++F +MQMS +KPD +T + VL AC
Sbjct: 260 ESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAAC 319
Query: 342 SHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVL 401
SHAGL+ +G F +M Y ++P+++HYGC+VD+L RA + EA ++I+NMPM P+ +
Sbjct: 320 SHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFV 379
Query: 402 WGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRL 461
LL+AC N+ +AE A ++LI+L+P N G YVL+SNIY++ W+ A KMR L
Sbjct: 380 LVGLLSACRIH---GNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMREL 436
Query: 462 MKERNIVKNPGCSVIEINDVVHEFMVGDGRHPCSEEIYSMLEYVAISLREECY 514
M ERNI K PGCS IE+ VVHEF+ GD HP S EIY L+ + L+ Y
Sbjct: 437 MVERNIKKPPGCSAIEVGGVVHEFVKGDVSHPQSSEIYETLDDMMRRLKSAGY 489
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 202/510 (39%), Positives = 299/510 (58%), Gaps = 38/510 (7%)
Query: 39 KCTHLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIINPSTFA 98
+C+ + KQ+HA+++K + + T+ S +S + YA +VF+ P TF
Sbjct: 52 RCSKQEELKQIHARMLKTGLIQDSYAITKFLSCCISSTSSDFLPYAQIVFDGFDRPDTFL 111
Query: 99 FNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDL---RQVKGVHSLVV 155
+N +IRG++ + R + LY +M+ +++T+P LLKAC +L + +H+ +
Sbjct: 112 WNLMIRGFSCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKACSNLSALEETTQIHAQIT 171
Query: 156 KSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFD--------------------------- 188
K + + ++++ LI Y G+ K A LLFD
Sbjct: 172 KL-GYENDVYAVNSLINSYAATGNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKMDIAL 230
Query: 189 ----QMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLG 244
+M EKN ++WT MI+G+V+ ++E + LF +M++S VE + ++L + LSACA LG
Sbjct: 231 TLFRKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDNVSLANALSACAQLG 290
Query: 245 ASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIG 304
A E GKW+H ++ K I ++ LG L DMYAKCG + EAL VFK + K+V W ++I
Sbjct: 291 ALEQGKWIHSYLTKTRIRMDSVLGCVLIDMYAKCGDMGEALEVFKNIQRKSVQAWTALIS 350
Query: 305 GLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVE 364
G A HG G EA+ F +MQ GIKP+ +T VLTACS+ GL+E+GK IFYNM RDY ++
Sbjct: 351 GYAYHGHGREAISKFMEMQKMGIKPNVITFTTVLTACSYTGLVEEGKLIFYNMERDYNLK 410
Query: 365 PNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVELAEIA 424
P ++HYGC+VDLL RA LLDEA I+ MP++PNAV+WG+LL AC N+EL E
Sbjct: 411 PTIEHYGCVVDLLSRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHK---NIELGEEI 467
Query: 425 MERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPGCSVIEINDVVHE 484
E LI ++P++ G YV +NI+A +WD A + RRLMKE+ + K PGCS I + HE
Sbjct: 468 GEILIAIDPYHGGRYVHKANIHAMGKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHE 527
Query: 485 FMVGDGRHPCSEEIYSMLEYVAISLREECY 514
F+ GD HP E+I S + + L E Y
Sbjct: 528 FLAGDRSHPEIEKIQSKWKIMRRKLEENGY 557
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein At2g20540-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 390 bits (1001), Expect = e-105, Method: Compositional matrix adjust.
Identities = 195/515 (37%), Positives = 323/515 (62%), Gaps = 44/515 (8%)
Query: 34 LPLLQKCTHLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIIN 93
+P+L+ C ++V+ K++HA I+K S S + K+++ + ++ YA+L+F ++ +
Sbjct: 18 VPILKNCPNIVELKKIHAHIVKFSLSQ---SSFLVTKMVDVCNHHAETEYANLLFKRVAD 74
Query: 94 PSTFAFNTVIRGYAEAGLGHRGIQLYTQMIG-----NGLDPDSFTYPILLKACGDL---- 144
P+ F +N +IR Y + I +Y QM+G N + PD FT+P ++K+C L
Sbjct: 75 PNAFLYNAMIRAYKHNKVYVLAITVYKQMLGHSHGENPIFPDKFTFPFVVKSCAGLMCYD 134
Query: 145 --RQVKG-VHSLVVKSK------------------DFNSVIHSLTR--------LITFYC 175
+QV G V KS D + V +T LI+ +
Sbjct: 135 LGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHKVFEEMTERDAVSWNTLISGHV 194
Query: 176 NFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVS 235
G ++ A+ +F++M +K + +WTA+++G+ + Y + ++ FR+M+ G+E +E++LVS
Sbjct: 195 RLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVS 254
Query: 236 VLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKN 295
VL ACA LGA ELGKW+H + +K + N + AL +MYAKCG I+E R+F + E++
Sbjct: 255 VLPACAQLGALELGKWIHFYADKAGFLRNICVCNALIEMYAKCGSIDEGRRLFDQMNERD 314
Query: 296 VCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFY 355
V +W+++I GLA HG EA+++F +MQ + I+P+ +T + +L+AC+HAGL+ +G F
Sbjct: 315 VISWSTMIVGLANHGRAHEAIELFQEMQKAKIEPNIITFVGLLSACAHAGLLNEGLRYFE 374
Query: 356 NMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDG 415
+M+RDY +EP V+HYGCLV+LL + LD+A E+I+ MPM+P++ +WGSLL++C S
Sbjct: 375 SMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELIKKMPMKPDSAIWGSLLSSCRSH--- 431
Query: 416 ANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPGCSV 475
+N+E+A IAME L++LEP + GNYVL+SN+YA +WD +MR+LM+ +++ K PGCS
Sbjct: 432 SNLEIAVIAMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKTPGCSS 491
Query: 476 IEINDVVHEFMVGDGRHPCSEEIYSMLEYVAISLR 510
IE++++V EF GD P S+ IY +L+ + + R
Sbjct: 492 IEVDNMVQEFASGDDSKPFSKAIYRVLKLLVMHQR 526
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa] gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 198/532 (37%), Positives = 312/532 (58%), Gaps = 54/532 (10%)
Query: 34 LPLLQKCTHLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIIN 93
L L + C + KQ+H++ IK I ++ S + YA +F+ I
Sbjct: 18 LSLFETCKSMYHLKQIHSRTIKTGIICNPIIQNKILSFCCSR-EFGDMCYARQLFDTIPE 76
Query: 94 PSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKA------------- 140
PS F++N + +GY+ G+ LY +M+ + PD +TYP L K
Sbjct: 77 PSVFSWNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTRSVALQLGREL 136
Query: 141 -------------------------CGDLRQVKGVHSLVVKSK--DFNSVIH-------- 165
CG + +G+ + KS +N++I
Sbjct: 137 HCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISGYNRIKKD 196
Query: 166 --SLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRD 223
S T ++T + N G V +A+ F +M E++ V+WTAMI+G+++ Y+E + LFR+M+
Sbjct: 197 VISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREMQT 256
Query: 224 SGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEE 283
S ++ +E T+VSVL+ACA LGA ELG+W+ +++KN + + +G AL DMY KCG +E
Sbjct: 257 SKIKPDEFTMVSVLTACAQLGALELGEWIRTYIDKNKVKNDTFVGNALIDMYFKCGNVEM 316
Query: 284 ALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSH 343
AL +F + +++ TW +++ GLAI+GCGEEA+ MF QM + + PD+VT + VL+AC+H
Sbjct: 317 ALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVLSACTH 376
Query: 344 AGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWG 403
G++++GK+ F +M + +EPN+ HYGC+VDLL +A L EA+E+I+NMPM+PN+++WG
Sbjct: 377 TGMVDEGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNSIVWG 436
Query: 404 SLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMK 463
+LL AC D E+AE A+E++++LEP N YVL NIYAA +WD ++R++M
Sbjct: 437 ALLGACRIHKDA---EMAERAIEQILELEPNNGAVYVLQCNIYAACNKWDKLRELRQVMM 493
Query: 464 ERNIVKNPGCSVIEINDVVHEFMVGDGRHPCSEEIYSMLEYVAISLREECYA 515
+R I K PGCS+IE+N +VHEF+ GD HP ++EIY L + L+ Y+
Sbjct: 494 DRGIKKTPGCSLIEMNGIVHEFVAGDQSHPQTKEIYGKLNKMTSDLKIAGYS 545
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana] gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 203/504 (40%), Positives = 321/504 (63%), Gaps = 26/504 (5%)
Query: 34 LPLLQKCTHLVQ---------FKQVHAQIIKASFDNRTISDTQLAK----LIESLVNSSQ 80
LP+++KC +L+Q +Q+HA I+ +ISD +L K + SL +
Sbjct: 12 LPMVEKCINLLQTYGVSSITKLRQIHAFSIRHGV---SISDAELGKHLIFYLVSLPSPPP 68
Query: 81 IAYAHLVFNQIINP-STFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGL-DPDSFTYPILL 138
++YAH VF++I P + F +NT+IRGYAE G LY +M +GL +PD+ TYP L+
Sbjct: 69 MSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLI 128
Query: 139 KAC---GDLRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNV 195
KA D+R + +HS+V++S F S+I+ L+ Y N GDV SA +FD+M EK++
Sbjct: 129 KAVTTMADVRLGETIHSVVIRS-GFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDL 187
Query: 196 VTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEF 255
V W ++ING + E + L+ +M G++ + T+VS+LSACA +GA LGK VH +
Sbjct: 188 VAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVY 247
Query: 256 VNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEA 315
+ K + N L D+YA+CG +EEA +F +++KN +W S+I GLA++G G+EA
Sbjct: 248 MIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEA 307
Query: 316 VKMFWQMQMS-GIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLV 374
+++F M+ + G+ P ++T + +L ACSH G++++G E F MR +YK+EP ++H+GC+V
Sbjct: 308 IELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMV 367
Query: 375 DLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPF 434
DLL RA + +AYE I++MPM+PN V+W +LL AC D +LAE A ++++LEP
Sbjct: 368 DLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDS---DLAEFARIQILQLEPN 424
Query: 435 NDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPGCSVIEINDVVHEFMVGDGRHPC 494
+ G+YVL+SN+YA++ +W D K+R+ M + K PG S++E+ + VHEF++GD HP
Sbjct: 425 HSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQ 484
Query: 495 SEEIYSMLEYVAISLREECYAARM 518
S+ IY+ L+ + LR E Y ++
Sbjct: 485 SDAIYAKLKEMTGRLRSEGYVPQI 508
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa] gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 203/518 (39%), Positives = 309/518 (59%), Gaps = 43/518 (8%)
Query: 34 LPLLQKCTHLVQFKQVHAQIIKASFDNRTISDTQLAK-LIESLVNSSQIAYAHLVFNQII 92
L L+ CT L K +HA +I+A TI D A LI +N + + YA VF QI
Sbjct: 19 LSFLESCTTLSHLKIIHAHLIRA----HTIFDVFAASCLISISINKNLLDYAAQVFYQIQ 74
Query: 93 NPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKAC---GDLRQVKG 149
NP+ F +N+ IRG++ + + Y Q NGL PD+ TYP L+KAC G L
Sbjct: 75 NPNLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQ 134
Query: 150 VHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQL------------------------ 185
H +++ F+S ++ L+T Y GD+KSA
Sbjct: 135 AHGQIIR-HGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIKSG 193
Query: 186 -------LFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLS 238
LFD+M EKN+VTW+ MI+G+ K + + I+L+ ++ GV NE +VSV++
Sbjct: 194 DVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIA 253
Query: 239 ACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCT 298
+CA+LGA ELG+ H+++ +N + +N LG AL DMYA+CG I++A+ VF + ++ +
Sbjct: 254 SCAHLGALELGERAHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRDALS 313
Query: 299 WNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMR 358
W ++I G A+HG E+A++ F +M+ +G+ P ++T AVL+ACSH GL+E+G E+F +M+
Sbjct: 314 WTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREITFTAVLSACSHGGLVERGLELFESMK 373
Query: 359 RDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANV 418
RDY++EP ++HYGC+VDLL RA L EA + + MPM+PNA +WG+LL AC N
Sbjct: 374 RDYRIEPRLEHYGCMVDLLGRAGKLAEAEKFVNEMPMKPNAPIWGALLGACRIHK---NS 430
Query: 419 ELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPGCSVIEI 478
E+AE A + LI+L+P + G YVL+SNIYA +W++ +R++MKER +VK PG ++ E+
Sbjct: 431 EIAERAGKTLIELKPEHSGYYVLLSNIYARTNKWENVENIRQMMKERGVVKPPGYTLFEM 490
Query: 479 NDVVHEFMVGDGRHPCSEEIYSMLEYVAISLREECYAA 516
+ VH+F +GD HP ++I M E + +R Y
Sbjct: 491 DGKVHKFTIGDKTHPEIQQIERMWEEILGKIRLAGYTG 528
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 519 | ||||||
| TAIR|locus:4010713895 | 595 | AT4G21065 "AT4G21065" [Arabido | 0.921 | 0.803 | 0.406 | 1e-98 | |
| TAIR|locus:2205200 | 741 | OTP82 "AT1G08070" [Arabidopsis | 0.969 | 0.678 | 0.373 | 4e-90 | |
| TAIR|locus:2034456 | 606 | AT1G31920 [Arabidopsis thalian | 0.982 | 0.841 | 0.368 | 6.5e-90 | |
| TAIR|locus:2154855 | 620 | AT5G66520 "AT5G66520" [Arabido | 0.888 | 0.743 | 0.400 | 5.9e-89 | |
| TAIR|locus:2056740 | 603 | OTP85 "ORGANELLE TRANSCRIPT PR | 0.957 | 0.824 | 0.354 | 1.4e-87 | |
| TAIR|locus:2025946 | 638 | CRR28 "CHLORORESPIRATORY REDUC | 0.946 | 0.769 | 0.366 | 1.3e-86 | |
| TAIR|locus:2154389 | 646 | LPA66 "LOW PSII ACCUMULATION 6 | 0.815 | 0.654 | 0.386 | 5e-83 | |
| TAIR|locus:2057574 | 583 | AT2G33760 [Arabidopsis thalian | 0.932 | 0.830 | 0.366 | 1.3e-82 | |
| TAIR|locus:2011892 | 596 | AT1G50270 "AT1G50270" [Arabido | 0.936 | 0.815 | 0.357 | 3.6e-82 | |
| TAIR|locus:2077878 | 685 | AT3G08820 "AT3G08820" [Arabido | 0.901 | 0.683 | 0.359 | 2.5e-81 |
| TAIR|locus:4010713895 AT4G21065 "AT4G21065" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 980 (350.0 bits), Expect = 1.0e-98, P = 1.0e-98
Identities = 205/504 (40%), Positives = 322/504 (63%)
Query: 34 LPLLQKCTHLVQ---------FKQVHAQIIKASFDNRTISDTQLAK-LI---ESLVNSSQ 80
LP+++KC +L+Q +Q+HA I+ +ISD +L K LI SL +
Sbjct: 12 LPMVEKCINLLQTYGVSSITKLRQIHAFSIRHGV---SISDAELGKHLIFYLVSLPSPPP 68
Query: 81 IAYAHLVFNQIINP-STFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGL-DPDSFTYPILL 138
++YAH VF++I P + F +NT+IRGYAE G LY +M +GL +PD+ TYP L+
Sbjct: 69 MSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLI 128
Query: 139 KAC---GDLRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNV 195
KA D+R + +HS+V++S F S+I+ L+ Y N GDV SA +FD+M EK++
Sbjct: 129 KAVTTMADVRLGETIHSVVIRS-GFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDL 187
Query: 196 VTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEF 255
V W ++ING + E + L+ +M G++ + T+VS+LSACA +GA LGK VH +
Sbjct: 188 VAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVY 247
Query: 256 VNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEA 315
+ K + N L D+YA+CG +EEA +F +++KN +W S+I GLA++G G+EA
Sbjct: 248 MIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEA 307
Query: 316 VKMFWQMQMS-GIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLV 374
+++F M+ + G+ P ++T + +L ACSH G++++G E F MR +YK+EP ++H+GC+V
Sbjct: 308 IELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMV 367
Query: 375 DLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPF 434
DLL RA + +AYE I++MPM+PN V+W +LL AC D +LAE A ++++LEP
Sbjct: 368 DLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDS---DLAEFARIQILQLEPN 424
Query: 435 NDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPGCSVIEINDVVHEFMVGDGRHPC 494
+ G+YVL+SN+YA++ +W D K+R+ M + K PG S++E+ + VHEF++GD HP
Sbjct: 425 HSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQ 484
Query: 495 SEEIYSMLEYVAISLREECYAARM 518
S+ IY+ L+ + LR E Y ++
Sbjct: 485 SDAIYAKLKEMTGRLRSEGYVPQI 508
|
|
| TAIR|locus:2205200 OTP82 "AT1G08070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 899 (321.5 bits), Expect = 4.0e-90, P = 4.0e-90
Identities = 195/522 (37%), Positives = 303/522 (58%)
Query: 5 LVPNSQLTHFT-NSANSHKNSNTATKSHHH-LPL-----LQKCTHLVQFKQVHAQIIKAS 57
L+PNS F S K + H H L L L T L+ + ++ A
Sbjct: 130 LLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAH 189
Query: 58 --FDNRTISDT-QLAKLIESLVNSSQIAYAHLVFNQIINPSTFAFNTVIRGYAEAGLGHR 114
FD D LI+ + I A +F++I ++N +I GYAE G
Sbjct: 190 KVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKE 249
Query: 115 GIQLYTQMIGNGLDPDSFTYPILLKAC---GDLRQVKGVHSLVVKSKDFNSVIHSLTRLI 171
++L+ M+ + PD T ++ AC G + + VH L + F S + + LI
Sbjct: 250 ALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVH-LWIDDHGFGSNLKIVNALI 308
Query: 172 TFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNEL 231
Y G++++A LF+++ K+V++W +I G+ Y+E + LF++M SG N++
Sbjct: 309 DLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDV 368
Query: 232 TLVSVLSACANLGASELGKWVHEFVNKNCI-ILN-DKLGAALTDMYAKCGYIEEALRVFK 289
T++S+L ACA+LGA ++G+W+H +++K + N L +L DMYAKCG IE A +VF
Sbjct: 369 TMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFN 428
Query: 290 IVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEK 349
+L K++ +WN++I G A+HG + + +F +M+ GI+PDD+T + +L+ACSH+G+++
Sbjct: 429 SILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDL 488
Query: 350 GKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTAC 409
G+ IF M +DYK+ P ++HYGC++DLL + L EA E+I M MEP+ V+W SLL AC
Sbjct: 489 GRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKAC 548
Query: 410 ASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVK 469
NVEL E E LIK+EP N G+YVL+SNIYA+ +W++ K R L+ ++ + K
Sbjct: 549 KMH---GNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKK 605
Query: 470 NPGCSVIEINDVVHEFMVGDGRHPCSEEIYSMLEYVAISLRE 511
PGCS IEI+ VVHEF++GD HP + EIY MLE + + L +
Sbjct: 606 VPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEK 647
|
|
| TAIR|locus:2034456 AT1G31920 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 897 (320.8 bits), Expect = 6.5e-90, P = 6.5e-90
Identities = 192/521 (36%), Positives = 307/521 (58%)
Query: 1 MLKQLVPNSQLTHFTNSANSHKNSNTATKSHHHLPLLQKCTHLVQFKQVHAQIIKAS-FD 59
M+K + S L + ++ + +N K L LL++C ++ +FKQVHA+ IK S F
Sbjct: 1 MIKAPILQSLLASRDDLTHNPEVNNFGGKEQECLYLLKRCHNIDEFKQVHARFIKLSLFY 60
Query: 60 NRTISDTQ-LAKLIESLVNSSQIAYAHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQL 118
+ + S + LAK S +S + YA +F I +P TF FNT+IRGY +
Sbjct: 61 SSSFSASSVLAKCAHSGWENS-MNYAASIFRGIDDPCTFDFNTMIRGYVNVMSFEEALCF 119
Query: 119 YTQMIGNGLDPDSFTYPILLKACGDLRQV---KGVHSLVVKSKDFNSVIHSLTRLITFYC 175
Y +M+ G +PD+FTYP LLKAC L+ + K +H V K + + LI Y
Sbjct: 120 YNEMMQRGNEPDNFTYPCLLKACTRLKSIREGKQIHGQVFKL-GLEADVFVQNSLINMYG 178
Query: 176 NFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKM-RDSGVEVNELTLV 234
G+++ + +F+++ K +W++M++ + E + LFR M ++ ++ E +V
Sbjct: 179 RCGEMELSSAVFEKLESKTAASWSSMVSARAGMGMWSECLLLFRGMCSETNLKAEESGMV 238
Query: 235 SVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEK 294
S L ACAN GA LG +H F+ +N LN + +L DMY KCG +++AL +F+ + ++
Sbjct: 239 SALLACANTGALNLGMSIHGFLLRNISELNIIVQTSLVDMYVKCGCLDKALHIFQKMEKR 298
Query: 295 NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIF 354
N T++++I GLA+HG GE A++MF +M G++PD V ++VL ACSH+GL+++G+ +F
Sbjct: 299 NNLTYSAMISGLALHGEGESALRMFSKMIKEGLEPDHVVYVSVLNACSHSGLVKEGRRVF 358
Query: 355 YNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADD 414
M ++ KVEP +HYGCLVDLL RA LL+EA E I+++P+E N V+W + L+ C
Sbjct: 359 AEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEALETIQSIPIEKNDVIWRTFLSQCRVRQ- 417
Query: 415 GANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPGCS 474
N+EL +IA + L+KL N G+Y+L+SN+Y+ WDD + R + + + + PG S
Sbjct: 418 --NIELGQIAAQELLKLSSHNPGDYLLISNLYSQGQMWDDVARTRTEIAIKGLKQTPGFS 475
Query: 475 VIEINDVVHEFMVGDGRHPCSEEIYSMLEYVAISLREECYA 515
++E+ H F+ D HP +EIY ML + L+ E Y+
Sbjct: 476 IVELKGKTHRFVSQDRSHPKCKEIYKMLHQMEWQLKFEGYS 516
|
|
| TAIR|locus:2154855 AT5G66520 "AT5G66520" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 888 (317.7 bits), Expect = 5.9e-89, P = 5.9e-89
Identities = 190/474 (40%), Positives = 277/474 (58%)
Query: 50 HAQIIKASFDNRTISDTQLAKL-IESLVNSSQIAYAHLVFNQIINPST----FAFNTVIR 104
+AQI+ FD DT L L I S + + L++ +++ S + F ++++
Sbjct: 67 YAQIVFDGFDR---PDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLK 123
Query: 105 GYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKSKDFNSVI 164
+ Q++ Q+ G + D + L+ + K H L + + + V
Sbjct: 124 ACSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDV- 182
Query: 165 HSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDS 224
S +I Y G + A LF +M EKN ++WT MI+G+V+ +E + LF +M++S
Sbjct: 183 -SWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNS 241
Query: 225 GVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEA 284
VE + ++L + LSACA LGA E GKW+H ++NK I ++ LG L DMYAKCG +EEA
Sbjct: 242 DVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEA 301
Query: 285 LRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHA 344
L VFK + +K+V W ++I G A HG G EA+ F +MQ GIKP+ +T AVLTACS+
Sbjct: 302 LEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYT 361
Query: 345 GLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGS 404
GL+E+GK IFY+M RDY ++P ++HYGC+VDLL RA LLDEA I+ MP++PNAV+WG+
Sbjct: 362 GLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGA 421
Query: 405 LLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKE 464
LL AC N+EL E E LI ++P++ G YV +NI+A +WD A + RRLMKE
Sbjct: 422 LLKACRIHK---NIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKE 478
Query: 465 RNIVKNPGCSVIEINDVVHEFMVGDGRHPCSEEIYSMLEYVAISLREECYAARM 518
+ + K PGCS I + HEF+ GD HP E+I S + L E Y +
Sbjct: 479 QGVAKVPGCSTISLEGTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPEL 532
|
|
| TAIR|locus:2056740 OTP85 "ORGANELLE TRANSCRIPT PROCESSING 85" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 875 (313.1 bits), Expect = 1.4e-87, P = 1.4e-87
Identities = 182/514 (35%), Positives = 308/514 (59%)
Query: 9 SQLTHFTNSANSHKNSNTAT-KSHHHLPLLQKCTHLVQFKQVHAQIIKASFDNRTISDTQ 67
S ++ F+++ K+S T + + + L+ KC L + Q+ A IK+ ++ +
Sbjct: 7 SLISSFSHAETFTKHSKIDTVNTQNPILLISKCNSLRELMQIQAYAIKSHIEDVSF---- 62
Query: 68 LAKLIESLVNS---SQIAYAHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIG 124
+AKLI S S ++YA +F + P FN++ RGY+ L+ +++
Sbjct: 63 VAKLINFCTESPTESSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILE 122
Query: 125 NGLDPDSFTYPILLKACG---DLRQVKGVHSLVVK-SKDFNSVIHSLTRLITFYCNFGDV 180
+G+ PD++T+P LLKAC L + + +H L +K D N ++ LI Y DV
Sbjct: 123 DGILPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGLDDN--VYVCPTLINMYTECEDV 180
Query: 181 KSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSAC 240
SA+ +FD++ E VV + AMI G+ ++ E + LFR+M+ ++ NE+TL+SVLS+C
Sbjct: 181 DSARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSC 240
Query: 241 ANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWN 300
A LG+ +LGKW+H++ K+ K+ AL DM+AKCG +++A+ +F+ + K+ W+
Sbjct: 241 ALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWS 300
Query: 301 SIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRD 360
++I A HG E+++ MF +M+ ++PD++T + +L ACSH G +E+G++ F M
Sbjct: 301 AMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSK 360
Query: 361 YKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVEL 420
+ + P++KHYG +VDLL RA L++AYE I +P+ P +LW LL AC+S + N++L
Sbjct: 361 FGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHN---NLDL 417
Query: 421 AEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPGCSVIEIND 480
AE ER+ +L+ + G+YV++SN+YA +W+ +R++MK+R VK PGCS IE+N+
Sbjct: 418 AEKVSERIFELDDSHGGDYVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNN 477
Query: 481 VVHEFMVGDGRHPCSEEIYSMLEYVAISLREECY 514
VVHEF GDG + +++ L+ + L+ Y
Sbjct: 478 VVHEFFSGDGVKSATTKLHRALDEMVKELKLSGY 511
|
|
| TAIR|locus:2025946 CRR28 "CHLORORESPIRATORY REDUCTION28" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 866 (309.9 bits), Expect = 1.3e-86, P = 1.3e-86
Identities = 188/513 (36%), Positives = 301/513 (58%)
Query: 20 SHKNSNTATKSHHHL-PLLQKCTHLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNS 78
S +++TA H + L + C+ + Q KQ+HA ++ ++ + K+++ +
Sbjct: 37 SSPSASTAGNHHQRIFSLAETCSDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSF 96
Query: 79 SQIAYAHLVFNQIINPSTFAFNTVIRGYA-EAGLGHRGIQLYTQMIGNG-LDPDSFTYPI 136
S + YA VF+ I N S+F +NT+IR A + LY +M+ G PD T+P
Sbjct: 97 SDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPF 156
Query: 137 LLKACGDL---RQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEK 193
+LKAC + + K VH +VK F ++ LI Y + G + A+ +FD+M E+
Sbjct: 157 VLKACAYIFGFSEGKQVHCQIVKH-GFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPER 215
Query: 194 NVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVH 253
++V+W +MI+ V+ Y + LFR+M+ S E + T+ SVLSACA LG+ LG W H
Sbjct: 216 SLVSWNSMIDALVRFGEYDSALQLFREMQRS-FEPDGYTMQSVLSACAGLGSLSLGTWAH 274
Query: 254 EFVNKNC---IILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHG 310
F+ + C + ++ + +L +MY KCG + A +VF+ + ++++ +WN++I G A HG
Sbjct: 275 AFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHG 334
Query: 311 CGEEAVKMFWQM--QMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVK 368
EEA+ F +M + ++P+ VT + +L AC+H G + KG++ F M RDY +EP ++
Sbjct: 335 RAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALE 394
Query: 369 HYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVELAEIAMERL 428
HYGC+VDL+ RA + EA +++ +MPM+P+AV+W SLL AC GA+VEL+E +
Sbjct: 395 HYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKK--GASVELSEEIARNI 452
Query: 429 IKLEPFND---GN----YVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPGCSVIEINDV 481
I + N+ GN YVL+S +YA+ ++W+D G +R+LM E I K PGCS IEIN +
Sbjct: 453 IGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGI 512
Query: 482 VHEFMVGDGRHPCSEEIYSMLEYVAISLREECY 514
HEF GD HP +++IY L+ + LR Y
Sbjct: 513 SHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGY 545
|
|
| TAIR|locus:2154389 LPA66 "LOW PSII ACCUMULATION 66" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 832 (297.9 bits), Expect = 5.0e-83, P = 5.0e-83
Identities = 171/442 (38%), Positives = 278/442 (62%)
Query: 83 YAHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKA-- 140
+ ++ ++ + P+ F F +V++ A+ G G Q++ + G D F L++
Sbjct: 115 FYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYV 174
Query: 141 -CG---DLRQV--KGV--HSLVV----KSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFD 188
CG D R + K + +VV + +D V+ ++ +I Y GD K+A++LFD
Sbjct: 175 MCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNV--MIDGYMRLGDCKAARMLFD 232
Query: 189 QMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASEL 248
+M +++VV+W MI+G+ +++ +++FR+M+ + N +TLVSVL A + LG+ EL
Sbjct: 233 KMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLEL 292
Query: 249 GKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAI 308
G+W+H + + I ++D LG+AL DMY+KCG IE+A+ VF+ + +NV TW+++I G AI
Sbjct: 293 GEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAI 352
Query: 309 HGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVK 368
HG +A+ F +M+ +G++P DV I +LTACSH GL+E+G+ F M +EP ++
Sbjct: 353 HGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIE 412
Query: 369 HYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVELAEIAMERL 428
HYGC+VDLL R+ LLDEA E I NMP++P+ V+W +LL AC NVE+ + L
Sbjct: 413 HYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACRMQ---GNVEMGKRVANIL 469
Query: 429 IKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPGCSVIEINDVVHEFMVG 488
+ + P + G YV +SN+YA++ W + +MR MKE++I K+PGCS+I+I+ V+HEF+V
Sbjct: 470 MDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVE 529
Query: 489 DGRHPCSEEIYSMLEYVAISLR 510
D HP ++EI SML ++ LR
Sbjct: 530 DDSHPKAKEINSMLVEISDKLR 551
|
|
| TAIR|locus:2057574 AT2G33760 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 828 (296.5 bits), Expect = 1.3e-82, P = 1.3e-82
Identities = 183/500 (36%), Positives = 289/500 (57%)
Query: 24 SNTATKSHHHLPLLQKCTHLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAY 83
+ A S + +++ + Q +QVHA +I + S + L KLI ++ IAY
Sbjct: 3 TKVAANSAAYEAIVRAGPRVKQLQQVHAHLIVTGYGR---SRSLLTKLITLACSARAIAY 59
Query: 84 AHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGD 143
HL+F + P F FN+VI+ ++ L + Y +M+ + + P ++T+ ++K+C D
Sbjct: 60 THLLFLSVPLPDDFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCAD 119
Query: 144 LRQV---KGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTA 200
L + KGVH V S F + L+TFY GD++ A+ +FD+M EK++V W +
Sbjct: 120 LSALRIGKGVHCHAVVS-GFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNS 178
Query: 201 MINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNC 260
+++G + E I +F +MR+SG E + T VS+LSACA GA LG WVH+++
Sbjct: 179 LVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEG 238
Query: 261 IILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFW 320
+ LN KLG AL ++Y++CG + +A VF + E NV W ++I HG G++AV++F
Sbjct: 239 LDLNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFN 298
Query: 321 QMQMS-GIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCR 379
+M+ G P++VT +AVL+AC+HAGL+E+G+ ++ M + Y++ P V+H+ C+VD+L R
Sbjct: 299 KMEDDCGPIPNNVTFVAVLSACAHAGLVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLGR 358
Query: 380 ARLLDEAYEVIRNMPMEPNAV---LWGSLLTACASADDGANVELA-EIAMERLIKLEPFN 435
A LDEAY+ I + A LW ++L AC N +L EIA +RLI LEP N
Sbjct: 359 AGFLDEAYKFIHQLDATGKATAPALWTAMLGACKMH---RNYDLGVEIA-KRLIALEPDN 414
Query: 436 DGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPGCSVIEINDVVHEFMVGDGRHPCS 495
G++V++SNIYA + D+ +R M N+ K G SVIE+ + + F +GD H +
Sbjct: 415 PGHHVMLSNIYALSGKTDEVSHIRDGMMRNNLRKQVGYSVIEVENKTYMFSMGDESHQET 474
Query: 496 EEIYSMLEYVAISLREECYA 515
EIY LE + +E YA
Sbjct: 475 GEIYRYLETLISRCKEIGYA 494
|
|
| TAIR|locus:2011892 AT1G50270 "AT1G50270" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 824 (295.1 bits), Expect = 3.6e-82, P = 3.6e-82
Identities = 179/501 (35%), Positives = 279/501 (55%)
Query: 18 ANSHKNSNTATKSHHHLPLLQKCTHLVQFK---QVHAQIIKASFDNRTISDTQLAK-LIE 73
A H N S H P L K ++ Q HA I+K D SD + LI
Sbjct: 91 AYRHMRRNGVIPSRHTFPPLLKAVFKLRDSNPFQFHAHIVKFGLD----SDPFVRNSLIS 146
Query: 74 SLVNSSQIAYAHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFT 133
+S +A +F+ + + +I G+ G + + +M G+ + T
Sbjct: 147 GYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMT 206
Query: 134 YPILLKACG---DLRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQM 190
+LKA G D+R + VH L +++ + + L+ Y AQ +FD+M
Sbjct: 207 VVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEM 266
Query: 191 TEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGK 250
+NVVTWTA+I G+V+ + + +G+ +F +M S V NE TL SVLSACA++GA G+
Sbjct: 267 PSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGR 326
Query: 251 WVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHG 310
VH ++ KN I +N G L D+Y KCG +EEA+ VF+ + EKNV TW ++I G A HG
Sbjct: 327 RVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAHG 386
Query: 311 CGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHY 370
+A +F+ M S + P++VT +AVL+AC+H GL+E+G+ +F +M+ + +EP HY
Sbjct: 387 YARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMEPKADHY 446
Query: 371 GCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVELAEIAMERLIK 430
C+VDL R LL+EA +I MPMEP V+WG+L +C D EL + A R+IK
Sbjct: 447 ACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGALFGSCLLHKD---YELGKYAASRVIK 503
Query: 431 LEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPGCSVIEINDVVHEFMVGDG 490
L+P + G Y L++N+Y+ WD+ ++R+ MK++ +VK+PG S IE+ + EF+ D
Sbjct: 504 LQPSHSGRYTLLANLYSESQNWDEVARVRKQMKDQQVVKSPGFSWIEVKGKLCEFIAFDD 563
Query: 491 RHPC-SEEIYSMLEYVAISLR 510
+ P S+++Y L+ V + +R
Sbjct: 564 KKPLESDDLYKTLDTVGVQMR 584
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| TAIR|locus:2077878 AT3G08820 "AT3G08820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 816 (292.3 bits), Expect = 2.5e-81, P = 2.5e-81
Identities = 174/484 (35%), Positives = 279/484 (57%)
Query: 35 PLLQK-CTHLVQFK---QVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQ 90
PL+ K CT K +H+ ++K F++ + T L + S ++ AH +F++
Sbjct: 115 PLVLKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSG---SGRLNDAHKLFDE 171
Query: 91 IINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKAC---GDLRQV 147
I + S + + GY +G I L+ +M+ G+ PDS+ +L AC GDL
Sbjct: 172 IPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSG 231
Query: 148 KGVHSLVVKSK-DFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHV 206
+ + + + + NS + T L+ Y G ++ A+ +FD M EK++VTW+ MI G+
Sbjct: 232 EWIVKYMEEMEMQKNSFVR--TTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYA 289
Query: 207 KQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDK 266
+EGI+LF +M ++ ++ ++V LS+CA+LGA +LG+W ++++ + N
Sbjct: 290 SNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLF 349
Query: 267 LGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSG 326
+ AL DMYAKCG + VFK + EK++ N+ I GLA +G + + +F Q + G
Sbjct: 350 MANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLG 409
Query: 327 IKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEA 386
I PD T + +L C HAGLI+ G F + Y ++ V+HYGC+VDL RA +LD+A
Sbjct: 410 ISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDA 469
Query: 387 YEVIRNMPMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIY 446
Y +I +MPM PNA++WG+LL+ C D +LAE ++ LI LEP+N GNYV +SNIY
Sbjct: 470 YRLICDMPMRPNAIVWGALLSGCRLVKD---TQLAETVLKELIALEPWNAGNYVQLSNIY 526
Query: 447 AAKAQWDDAGKMRRLMKERNIVKNPGCSVIEINDVVHEFMVGDGRHPCSEEIYSMLEYVA 506
+ +WD+A ++R +M ++ + K PG S IE+ VHEF+ D HP S++IY+ LE +
Sbjct: 527 SVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGKVHEFLADDKSHPLSDKIYAKLEDLG 586
Query: 507 ISLR 510
+R
Sbjct: 587 NEMR 590
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | AT5G66520 | pentatricopeptide (PPR) repeat-containing protein; pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 18 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Pentatricopeptide repeat (InterPro-IPR002885); BEST Arabidopsis thaliana protein match is- pentatricopeptide (PPR) repeat-containing protein (TAIR-AT5G06540.1); Has 14737 Blast hits to 5344 proteins in 184 species- Archae - 1; Bacteria - 4; Metazoa - 109; Fungi - 73; Plants - 14158; Viruses - 0; Other Eukaryo [...] (620 aa) | |||||||||
(Arabidopsis thaliana) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | AT5G53270 | seed maturation family protein; seed maturation family protein; FUNCTIONS IN- molecular_functio [...] (159 aa) | • | 0.990 | |||||||
 | PER65 | peroxidase, putative; peroxidase, putative; FUNCTIONS IN- xylan 1,4-beta-xylosidase activity, p [...] (334 aa) | • | 0.940 | |||||||
 | ATFOLT1 | ATFOLT1 (ARABIDOPSIS THALIANA FOLATE TRANSPORTER 1); binding / folic acid transporter; Encodes [...] (308 aa) | • | 0.744 | |||||||
 | ATOMT1 | ATOMT1 (O-METHYLTRANSFERASE 1); caffeate O-methyltransferase/ myricetin 3'-O-methyltransferase/ [...] (363 aa) | • | 0.599 | |||||||
 | NDF4 | NDF4 (NDH-DEPENDENT CYCLIC ELECTRON FLOW 1); electron carrier/ iron-sulfur cluster binding; enc [...] (204 aa) | • | 0.593 | |||||||
 | ATDFD | ATDFD (A. THALIANA DHFS-FPGS HOMOLOG D); tetrahydrofolylpolyglutamate synthase; A. THALIANA DHF [...] (492 aa) | • | 0.524 | |||||||
 | ATRAB8A | ATRAB8A; GTP binding; small GTP-binding protein (ara-3) (216 aa) | • | 0.508 | |||||||
 | FKBP13 | FK506-binding protein 1 (FKBP13); FK506-binding protein 1 (FKBP13); FUNCTIONS IN- FK506 binding [...] (208 aa) | • | 0.505 | |||||||
 | AT4G28080 | binding; binding; FUNCTIONS IN- binding; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 1 [...] (1834 aa) | • | 0.499 | |||||||
 | AT1G31920 | pentatricopeptide (PPR) repeat-containing protein; pentatricopeptide (PPR) repeat-containing pr [...] (606 aa) | • | • | 0.480 | ||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 519 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-98 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 9e-95 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-56 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-44 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-26 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-16 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-15 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-11 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-11 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-08 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.003 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 316 bits (811), Expect = 1e-98
Identities = 159/462 (34%), Positives = 257/462 (55%), Gaps = 16/462 (3%)
Query: 47 KQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIINPSTFAFNTVIRGY 106
+++H ++K F + + LI+ ++ A VF+++ ++ +I GY
Sbjct: 308 REMHGYVVKTGFA---VDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGY 364
Query: 107 AEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQV-KGV--HSLVVKSKDFNSV 163
+ GL + ++ Y M + + PD T +L AC L + GV H L + K S
Sbjct: 365 EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAER-KGLISY 423
Query: 164 IHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYR--EGIDLFRKM 221
+ LI Y + A +F + EK+V++WT++I G + N R E + FR+M
Sbjct: 424 VVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGL--RLNNRCFEALIFFRQM 481
Query: 222 RDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYI 281
+ ++ N +TL++ LSACA +GA GK +H V + I + L AL D+Y +CG +
Sbjct: 482 LLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRM 540
Query: 282 EEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTAC 341
A F EK+V +WN ++ G HG G AV++F +M SG+ PD+VT I++L AC
Sbjct: 541 NYAWNQFN-SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCAC 599
Query: 342 SHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVL 401
S +G++ +G E F++M Y + PN+KHY C+VDLL RA L EAY I MP+ P+ +
Sbjct: 600 SRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAV 659
Query: 402 WGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRL 461
WG+LL AC +VEL E+A + + +L+P + G Y+L+ N+YA +WD+ ++R+
Sbjct: 660 WGALLNACRIHR---HVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKT 716
Query: 462 MKERNIVKNPGCSVIEINDVVHEFMVGDGRHPCSEEIYSMLE 503
M+E + +PGCS +E+ VH F+ D HP +EI ++LE
Sbjct: 717 MRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLE 758
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Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 302 bits (775), Expect = 9e-95
Identities = 146/439 (33%), Positives = 239/439 (54%), Gaps = 7/439 (1%)
Query: 81 IAYAHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKA 140
+ A +F+++ + ++ T+I G +AG L+ +M +G D + T+ ++L+A
Sbjct: 174 LIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRA 233
Query: 141 C---GDLRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVT 197
G R + +H V+K+ S LI Y GD++ A+ +FD M EK V
Sbjct: 234 SAGLGSARAGQQLHCCVLKTGVVGDTFVSCA-LIDMYSKCGDIEDARCVFDGMPEKTTVA 292
Query: 198 WTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVN 257
W +M+ G+ E + L+ +MRDSGV +++ T ++ + L E K H +
Sbjct: 293 WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLI 352
Query: 258 KNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVK 317
+ L+ AL D+Y+K G +E+A VF + KN+ +WN++I G HG G +AV+
Sbjct: 353 RTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVE 412
Query: 318 MFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLL 377
MF +M G+ P+ VT +AVL+AC ++GL E+G EIF +M +++++P HY C+++LL
Sbjct: 413 MFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELL 472
Query: 378 CRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDG 437
R LLDEAY +IR P +P +W +LLTAC N+EL +A E+L + P
Sbjct: 473 GREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHK---NLELGRLAAEKLYGMGPEKLN 529
Query: 438 NYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPGCSVIEINDVVHEFMVGDGRHPCSEE 497
NYV++ N+Y + + +A K+ +K + + +P C+ IE+ H F GD HP S E
Sbjct: 530 NYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSRE 589
Query: 498 IYSMLEYVAISLREECYAA 516
IY L+ + + E Y A
Sbjct: 590 IYQKLDELMKEISEYGYVA 608
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Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 200 bits (510), Expect = 6e-56
Identities = 105/343 (30%), Positives = 192/343 (55%), Gaps = 14/343 (4%)
Query: 71 LIESLVNSSQIAYAHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPD 130
++ V ++ +A VF ++ F++N ++ GYA+AG + LY +M+ G+ PD
Sbjct: 127 MLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPD 186
Query: 131 SFTYPILLKACG---DLRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLF 187
+T+P +L+ CG DL + + VH+ VV+ F + + LIT Y GDV SA+L+F
Sbjct: 187 VYTFPCVLRTCGGIPDLARGREVHAHVVRF-GFELDVDVVNALITMYVKCGDVVSARLVF 245
Query: 188 DQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASE 247
D+M ++ ++W AMI+G+ + EG++LF MR+ V+ + +T+ SV+SAC LG
Sbjct: 246 DRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDER 305
Query: 248 LGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLA 307
LG+ +H +V K ++ + +L MY G EA +VF + K+ +W ++I G
Sbjct: 306 LGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYE 365
Query: 308 IHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRR----DYKV 363
+G ++A++ + M+ + PD++T+ +VL+AC+ G ++ G ++ R Y V
Sbjct: 366 KNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVV 425
Query: 364 EPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLL 406
N L+++ + + +D+A EV N+P E + + W S++
Sbjct: 426 VAN-----ALIEMYSKCKCIDKALEVFHNIP-EKDVISWTSII 462
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Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 167 bits (424), Expect = 1e-44
Identities = 95/309 (30%), Positives = 160/309 (51%), Gaps = 7/309 (2%)
Query: 123 IGNGLDPDSFTYPILLKACGDLRQVKGVHSLV--VKSKDFNSVIHSLTRLITFYCNFGDV 180
G + TY L++AC L+ ++ V ++ V+S F + + R++ + G +
Sbjct: 115 AGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGML 174
Query: 181 KSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSAC 240
A+ LFD+M E+N+ +W +I G V NYRE LFR+M + G + T V +L A
Sbjct: 175 IDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRAS 234
Query: 241 ANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWN 300
A LG++ G+ +H V K ++ + + AL DMY+KCG IE+A VF + EK WN
Sbjct: 235 AGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWN 294
Query: 301 SIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRD 360
S++ G A+HG EEA+ ++++M+ SG+ D T ++ S L+E K+ + R
Sbjct: 295 SMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT 354
Query: 361 YKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVEL 420
++ LVDL + +++A V MP + N + W +L+ + G +
Sbjct: 355 -GFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK-NLISWNALIA--GYGNHGRGTKA 410
Query: 421 AEIAMERLI 429
E+ ER+I
Sbjct: 411 VEM-FERMI 418
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Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 4e-26
Identities = 60/217 (27%), Positives = 113/217 (52%), Gaps = 9/217 (4%)
Query: 47 KQVHAQIIKAS-FDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIINPSTFAFNTVIRG 105
+Q+H ++K + +S LI+ I A VF+ + +T A+N+++ G
Sbjct: 244 QQLHCCVLKTGVVGDTFVS----CALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAG 299
Query: 106 YAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKAC---GDLRQVKGVHSLVVKSKDFNS 162
YA G + LY +M +G+ D FT+ I+++ L K H+ ++++ F
Sbjct: 300 YALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPL 358
Query: 163 VIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMR 222
I + T L+ Y +G ++ A+ +FD+M KN+++W A+I G+ + +++F +M
Sbjct: 359 DIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMI 418
Query: 223 DSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKN 259
GV N +T ++VLSAC G SE G + + +++N
Sbjct: 419 AEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSEN 455
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Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
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Score = 81.5 bits (201), Expect = 3e-16
Identities = 57/229 (24%), Positives = 101/229 (44%), Gaps = 5/229 (2%)
Query: 184 QLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSG-VEVNELTLVSVLSACAN 242
L D K+ V+ + I V +RE ++LF + + T +++ AC
Sbjct: 76 ARLDDTQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIA 135
Query: 243 LGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSI 302
L + K V+ V + + + + M+ KCG + +A R+F + E+N+ +W +I
Sbjct: 136 LKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTI 195
Query: 303 IGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYK 362
IGGL G EA +F +M G + T + +L A + G G+++ + +
Sbjct: 196 IGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGV 255
Query: 363 VEPNVKHYGC-LVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACA 410
V C L+D+ + +++A V MP E V W S+L A
Sbjct: 256 VGD--TFVSCALIDMYSKCGDIEDARCVFDGMP-EKTTVAWNSMLAGYA 301
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Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 8e-15
Identities = 41/159 (25%), Positives = 80/159 (50%), Gaps = 1/159 (0%)
Query: 210 NYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGA 269
+ + L M++ V V+E V++ C A E G V + L +LG
Sbjct: 66 QLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGN 125
Query: 270 ALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKP 329
A+ M+ + G + A VF + E+++ +WN ++GG A G +EA+ ++ +M +G++P
Sbjct: 126 AMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRP 185
Query: 330 DDVTLIAVLTACSHAGLIEKGKEIFYN-MRRDYKVEPNV 367
D T VL C + +G+E+ + +R ++++ +V
Sbjct: 186 DVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDV 224
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Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 1e-11
Identities = 75/345 (21%), Positives = 134/345 (38%), Gaps = 77/345 (22%)
Query: 133 TYPILLKACGDLRQVKGVHSL--VVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQM 190
T+ +L+ C + + G + +V+ + T LI+ G V + +F +M
Sbjct: 439 TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEM 498
Query: 191 T----EKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGA- 245
E NV T+ A+I+G + + + MR V+ + + +++SAC GA
Sbjct: 499 VNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAV 558
Query: 246 -------SELGKWVHEFVNKNCIILNDKLG-AALTDMYAKCGYIEEALRVFKIVLEKNVC 297
+E+ H I D + AL A G ++ A V++++ E N
Sbjct: 559 DRAFDVLAEMKAETHP-------IDPDHITVGALMKACANAGQVDRAKEVYQMIHEYN-- 609
Query: 298 TWNSIIGG------LAIHGCG-----EEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGL 346
I G +A++ C + A+ ++ M+ G+KPD+V A++ HAG
Sbjct: 610 -----IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGD 664
Query: 347 IEKGKEIFYNMR----------------------------------RDYKVEPNVKHYGC 372
++K EI + R + K+ P V
Sbjct: 665 LDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNA 724
Query: 373 LVDLLCRARLLDEAYEV---IRNMPMEPNAVLWGSLLTACASADD 414
L+ LC L +A EV ++ + + PN + + LL A DD
Sbjct: 725 LITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDD 769
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 1e-11
Identities = 61/249 (24%), Positives = 109/249 (43%), Gaps = 58/249 (23%)
Query: 235 SVLSACANLGASELGKWV-HEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLE 293
+++S CA G + V HE VN + N AL D A+ G + +A + I+
Sbjct: 477 TLISTCAKSGKVDAMFEVFHEMVNAG-VEANVHTFGALIDGCARAGQVAKAFGAYGIMRS 535
Query: 294 KNV----CTWNSIIGGLAIHGCGEEAVKMFWQM--QMSGIKPDDVTLIAVLTACSHAGLI 347
KNV +N++I G + A + +M + I PD +T+ A++ AC++AG +
Sbjct: 536 KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQV 595
Query: 348 EKGKEIFYNMRRDYK-----------------------------------VEPNVKHYGC 372
++ KE+ Y M +Y V+P+ +
Sbjct: 596 DRAKEV-YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSA 654
Query: 373 LVDLLCRARLLDEAYEVIRNMP---MEPNAVLWGSLLTACASADDGANVELAEIAME--- 426
LVD+ A LD+A+E++++ ++ V + SL+ AC++A + + A+E
Sbjct: 655 LVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNW------KKALELYE 708
Query: 427 --RLIKLEP 433
+ IKL P
Sbjct: 709 DIKSIKLRP 717
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 63.0 bits (153), Expect = 2e-10
Identities = 63/305 (20%), Positives = 123/305 (40%), Gaps = 58/305 (19%)
Query: 92 INPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNG--LDPDSFTYPILLKACGDLRQV-- 147
+ P FN +I ++G R + +M +DPD T L+KAC + QV
Sbjct: 538 VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDR 597
Query: 148 -KGVHSLVVKS--KDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNV----VTWTA 200
K V+ ++ + K V T + GD A ++D M +K V V ++A
Sbjct: 598 AKEVYQMIHEYNIKGTPEV---YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSA 654
Query: 201 MIN--GHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNK 258
+++ GH + + ++ + R G+++ ++ S++ AC+N W
Sbjct: 655 LVDVAGHAGDLD--KAFEILQDARKQGIKLGTVSYSSLMGACSNAK-----NW------- 700
Query: 259 NCIILNDKLGAALTDMYAKCGYIEEALRVFK----IVLEKNVCTWNSIIGGLAIHGCGEE 314
++AL +++ I L V T N++I L +
Sbjct: 701 -----------------------KKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPK 737
Query: 315 AVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLV 374
A+++ +M+ G+ P+ +T +L A + G ++ + D ++PN+ C+
Sbjct: 738 ALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCIT 796
Query: 375 DLLCR 379
L R
Sbjct: 797 GLCLR 801
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 54.7 bits (133), Expect = 4e-10
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 94 PSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKAC 141
P +NT+I GY + G ++L+ +M G+ P+ +TY IL+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.8 bits (128), Expect = 2e-09
Identities = 13/50 (26%), Positives = 26/50 (52%)
Query: 193 KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACAN 242
+VVT+ +I+G+ K+ E + LF +M+ G++ N T ++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 8e-08
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 294 KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSH 343
+V T+N++I G G EEA+K+F +M+ GIKP+ T ++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 2e-06
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 196 VTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNE 230
VT+ +I+G K E ++LF++M++ G+E +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 7e-06
Identities = 11/31 (35%), Positives = 22/31 (70%)
Query: 196 VTWTAMINGHVKQKNYREGIDLFRKMRDSGV 226
VT+ ++I+G+ K E ++LF++M++ GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 2e-05
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 11/52 (21%)
Query: 160 FNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEK----NVVTWTAMINGHVK 207
+N++I YC G V+ A LF++M ++ NV T++ +I+G K
Sbjct: 6 YNTLIDG-------YCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 2e-04
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 298 TWNSIIGGLAIHGCGEEAVKMFWQMQMSGI 327
T+NS+I G G EEA+++F +M+ G+
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.1 bits (90), Expect = 2e-04
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 363 VEPNVKHYGCLVDLLCRARLLDEAYEVIRNMP 394
++P+V Y L+D LCRA +DEA E++ M
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 7e-04
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 297 CTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDD 331
T+N++I GL G EEA+++F +M+ GI+PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.001
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 365 PNVKHYGCLVDLLCRARLLDEAYEVIRNMP---MEPNAVLWGSLLTACA 410
P+V Y L+D C+ ++EA ++ M ++PN + L+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.003
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 97 FAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDS 131
+NT+I G +AG ++L+ +M G++PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 519 | |||
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.96 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.96 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.89 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.89 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.89 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.88 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.87 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.86 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.85 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.85 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.83 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.81 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.8 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.79 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.77 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.75 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.72 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.68 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.65 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.65 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.65 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.63 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.62 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.62 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.61 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.59 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.58 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.57 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.56 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.55 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.54 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.54 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.52 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.52 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.52 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.52 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.51 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.49 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.48 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.48 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.46 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.44 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.43 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.43 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.39 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.38 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.38 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.33 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.33 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.32 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.32 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.31 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.31 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.3 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.29 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.29 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.27 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.27 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.26 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.23 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.22 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.21 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.17 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.16 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.14 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.13 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.13 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.13 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.12 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.11 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.11 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.05 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.04 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.03 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.0 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.97 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.95 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.94 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.92 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.87 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.87 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.87 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.84 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.83 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.83 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.83 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.81 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.8 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.8 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.77 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.76 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.75 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.75 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.7 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.7 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.69 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.68 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.68 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.66 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.66 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.65 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.62 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.61 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.61 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.58 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.57 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.56 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.56 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.55 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.55 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.54 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.54 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.53 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.53 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.49 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.47 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.45 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.4 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.4 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.39 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.37 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.35 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.3 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.29 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.27 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.27 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.25 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.23 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.22 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.2 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.17 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.14 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.11 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.11 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.1 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.09 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.07 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.02 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.0 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.99 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.92 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.92 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.9 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.89 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.86 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.85 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.84 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.81 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.8 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.79 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.79 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.78 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.78 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.73 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.73 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.72 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.71 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.7 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.67 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.66 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.66 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.62 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.6 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.58 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.58 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.56 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.56 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.53 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.51 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.5 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.49 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.48 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.47 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.47 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.45 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.44 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.43 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.4 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.38 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.37 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.36 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.35 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.31 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.31 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.3 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.29 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.27 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.26 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.25 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.25 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.25 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.24 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.24 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.22 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.19 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.16 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.01 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.97 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.94 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 96.89 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.87 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.81 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.78 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.77 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.76 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.69 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.67 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.67 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.64 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.64 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.64 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.42 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.42 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.41 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.39 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.23 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.19 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.16 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.11 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.01 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.85 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.85 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.82 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.77 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.77 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.73 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.73 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.7 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.68 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.53 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.48 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.44 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.44 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.44 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.42 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.29 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.27 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.27 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.24 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.21 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.1 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.1 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.06 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.05 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.04 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.89 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 94.8 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.77 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.66 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 94.57 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.36 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 94.21 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.19 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.11 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.1 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.05 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.01 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 93.95 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.87 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 93.75 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.68 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.66 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 93.62 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 93.59 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 93.56 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.55 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.52 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 93.36 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.32 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.24 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 93.13 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.1 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.04 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 92.55 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 92.51 | |
| PRK09687 | 280 | putative lyase; Provisional | 92.49 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 92.42 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 92.24 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 91.9 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 91.71 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.33 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 91.32 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 91.31 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 91.3 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 91.28 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.14 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 91.09 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 90.76 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 90.76 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 90.6 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 90.57 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 90.49 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 90.44 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 90.42 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 90.33 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 90.11 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 89.74 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 89.42 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 89.3 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 89.16 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 88.94 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 88.83 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 88.61 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 88.29 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 88.19 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 88.17 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 87.87 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 87.76 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 87.64 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 87.59 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 87.55 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 87.28 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 87.03 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 86.93 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 86.81 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 86.01 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 85.8 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 85.7 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 85.55 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 85.38 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 84.83 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 84.75 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 84.61 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 83.03 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 82.98 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 82.72 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 82.29 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 82.08 | |
| PF13762 | 145 | MNE1: Mitochondrial splicing apparatus component | 81.9 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 81.89 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 81.3 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 81.11 | |
| PF09477 | 116 | Type_III_YscG: Bacterial type II secretion system | 80.77 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 80.28 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 80.25 |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-76 Score=607.19 Aligned_cols=503 Identities=30% Similarity=0.518 Sum_probs=482.9
Q ss_pred chhhhhhhhhccccCCCCCCCCCcccHHHHHHhccCchHH---HHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCChHH
Q 048578 7 PNSQLTHFTNSANSHKNSNTATKSHHHLPLLQKCTHLVQF---KQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAY 83 (519)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~ 83 (519)
+..++..|..... ..+..||..||+.++.+|++.++. .+++..|.+.|+.||..+++.|+++|++. |++++
T Consensus 103 ~~~Al~~f~~m~~---~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~---g~~~~ 176 (697)
T PLN03081 103 HREALELFEILEA---GCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKC---GMLID 176 (697)
T ss_pred HHHHHHHHHHHHh---cCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcC---CCHHH
Confidence 3455555555432 234679999999999999766555 89999999999999999999999999999 99999
Q ss_pred HHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccc---hHHHHHHHHHhCCC
Q 048578 84 AHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQ---VKGVHSLVVKSKDF 160 (519)
Q Consensus 84 A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---~~~~~~~~~~~~~~ 160 (519)
|.++|++|.+||..+||.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|+..+. ..+++..+.+.+ +
T Consensus 177 A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g-~ 255 (697)
T PLN03081 177 ARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTG-V 255 (697)
T ss_pred HHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhC-C
Confidence 999999999999999999999999999999999999999999999999999999999999988 677777888888 9
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048578 161 NSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSAC 240 (519)
Q Consensus 161 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 240 (519)
.++..++++|+++|++.|++++|.++|+.|..+|+.+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|
T Consensus 256 ~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~ 335 (697)
T PLN03081 256 VGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIF 335 (697)
T ss_pred CccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHH
Q 048578 241 ANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFW 320 (519)
Q Consensus 241 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 320 (519)
++.|+++.|.+++..+.+.|++++..++++|+++|++.|++++|.++|++|.++|..+||+||.+|++.|+.++|+++|+
T Consensus 336 ~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~ 415 (697)
T PLN03081 336 SRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFE 415 (697)
T ss_pred HhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHH
Q 048578 321 QMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAV 400 (519)
Q Consensus 321 ~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~ 400 (519)
+|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+++|+.|+..+|+.++++|++.|++++|.+++++|++.|+..
T Consensus 416 ~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~ 495 (697)
T PLN03081 416 RMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVN 495 (697)
T ss_pred HHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHH
Confidence 99999999999999999999999999999999999999878999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCcccEEEECC
Q 048578 401 LWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPGCSVIEIND 480 (519)
Q Consensus 401 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~ 480 (519)
+|++++.+|.. +|+++.|..+++++.+.+|++...|..++.+|.+.|+|++|.+++++|+++|+++.|+++|+++.+
T Consensus 496 ~~~~Ll~a~~~---~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~ 572 (697)
T PLN03081 496 MWAALLTACRI---HKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKK 572 (697)
T ss_pred HHHHHHHHHHH---cCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECC
Confidence 99999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCCChhHHHHHHHHHHHHHHhcccCCCCC
Q 048578 481 VVHEFMVGDGRHPCSEEIYSMLEYVAISLREECYAARMP 519 (519)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 519 (519)
.++.|.++...||+.+++++.+.++...|++.||.|||.
T Consensus 573 ~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 573 QDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred eEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 999999999999999999999999999999999999973
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-74 Score=604.36 Aligned_cols=490 Identities=32% Similarity=0.593 Sum_probs=476.2
Q ss_pred CCCCCCCCCcccHHHHHHhccCchHH---HHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCCCCCcc
Q 048578 21 HKNSNTATKSHHHLPLLQKCTHLVQF---KQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIINPSTF 97 (519)
Q Consensus 21 ~~~~~~~p~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 97 (519)
|...|++||..||+.++.+|++.++. ++++..+.+.|+.||..+|++|+.+|+++ |++++|.++|++|..||..
T Consensus 279 M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~---g~~~~A~~vf~~m~~~d~~ 355 (857)
T PLN03077 279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSL---GSWGEAEKVFSRMETKDAV 355 (857)
T ss_pred HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhc---CCHHHHHHHHhhCCCCCee
Confidence 44589999999999999999765554 89999999999999999999999999999 9999999999999999999
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccc---hHHHHHHHHHhCCCCCchhHHHHHHHHH
Q 048578 98 AFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQ---VKGVHSLVVKSKDFNSVIHSLTRLITFY 174 (519)
Q Consensus 98 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 174 (519)
+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+ +.++++.+.+.+ ..|+..++++|+++|
T Consensus 356 s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g-~~~~~~~~n~Li~~y 434 (857)
T PLN03077 356 SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKG-LISYVVVANALIEMY 434 (857)
T ss_pred eHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhC-CCcchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 777788888888 999999999999999
Q ss_pred HhcCChHHHHHHHhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 048578 175 CNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHE 254 (519)
Q Consensus 175 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 254 (519)
++.|++++|.++|++|.++|..+|+++|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+++.+.+++.
T Consensus 435 ~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~ 513 (857)
T PLN03077 435 SKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHA 513 (857)
T ss_pred HHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHH
Confidence 9999999999999999999999999999999999999999999999986 599999999999999999999999999999
Q ss_pred HHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 048578 255 FVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTL 334 (519)
Q Consensus 255 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 334 (519)
.+.+.|+.++..++++|+++|++.|++++|.++|+.+ .+|..+|+++|.+|++.|+.++|+++|++|.+.|+.||..||
T Consensus 514 ~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~ 592 (857)
T PLN03077 514 HVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTF 592 (857)
T ss_pred HHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccH
Confidence 9999999999999999999999999999999999999 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHccccC
Q 048578 335 IAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADD 414 (519)
Q Consensus 335 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 414 (519)
+.++.+|++.|++++|.++|+.|.+.+|+.|+..+|+.++++|++.|++++|.+++++|+++||..+|++|+.+|..
T Consensus 593 ~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~--- 669 (857)
T PLN03077 593 ISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRI--- 669 (857)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHH---
Confidence 99999999999999999999999966899999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCCC
Q 048578 415 GANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPGCSVIEINDVVHEFMVGDGRHPC 494 (519)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (519)
+++.+.++...+++.+++|+++..|..++++|...|+|++|.++.+.|+++|++++|++|||++++.++.|.++...||+
T Consensus 670 ~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~ 749 (857)
T PLN03077 670 HRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQ 749 (857)
T ss_pred cCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhcccCCCCC
Q 048578 495 SEEIYSMLEYVAISLREECYAARMP 519 (519)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~p~~~ 519 (519)
.++|+..++++...|++.||.|||.
T Consensus 750 ~~~i~~~l~~l~~~~~~~g~~~~~~ 774 (857)
T PLN03077 750 IKEINTVLEGFYEKMKASGLAGSES 774 (857)
T ss_pred hHHHHHHHHHHHHHHHhCCcCCCcc
Confidence 9999999999999999999999973
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-65 Score=538.51 Aligned_cols=466 Identities=27% Similarity=0.417 Sum_probs=435.5
Q ss_pred CCCCCCCCCcccHHHHHHhccCchHH---HHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCCCCCcc
Q 048578 21 HKNSNTATKSHHHLPLLQKCTHLVQF---KQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIINPSTF 97 (519)
Q Consensus 21 ~~~~~~~p~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 97 (519)
|...|++||..||+.+|++|+..++. .+++..+.+.|+.|++.++++|+.+|+++ |++++|.++|++|+.||..
T Consensus 178 M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~---g~~~~A~~lf~~m~~~d~~ 254 (857)
T PLN03077 178 MLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKC---GDVVSARLVFDRMPRRDCI 254 (857)
T ss_pred HHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcC---CCHHHHHHHHhcCCCCCcc
Confidence 44479999999999999999876655 89999999999999999999999999999 9999999999999999999
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccc---hHHHHHHHHHhCCCCCchhHHHHHHHHH
Q 048578 98 AFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQ---VKGVHSLVVKSKDFNSVIHSLTRLITFY 174 (519)
Q Consensus 98 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 174 (519)
+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+ +.+++..+.+.+ +.|+..+|++++.+|
T Consensus 255 s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g-~~~d~~~~n~Li~~y 333 (857)
T PLN03077 255 SWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTG-FAVDVSVCNSLIQMY 333 (857)
T ss_pred hhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhC-CccchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998 788888888888 999999999999999
Q ss_pred HhcCChHHHHHHHhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 048578 175 CNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHE 254 (519)
Q Consensus 175 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 254 (519)
++.|++++|.++|++|..||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.+.++++
T Consensus 334 ~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~ 413 (857)
T PLN03077 334 LSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHE 413 (857)
T ss_pred HhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 048578 255 FVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTL 334 (519)
Q Consensus 255 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 334 (519)
.+.+.|..++..++++|+.+|++.|++++|.++|++|.++|..+|+.++.+|++.|+.++|+.+|++|.. ++.||..||
T Consensus 414 ~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~ 492 (857)
T PLN03077 414 LAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTL 492 (857)
T ss_pred HHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986 589999999
Q ss_pred HHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHccccC
Q 048578 335 IAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADD 414 (519)
Q Consensus 335 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 414 (519)
+.++.+|++.|+++.+.+++..+.+ .|+.++..+++.|+++|+++|++++|.++|+.+ .||..+|+++|.+|..
T Consensus 493 ~~lL~a~~~~g~l~~~~~i~~~~~~-~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~--- 566 (857)
T PLN03077 493 IAALSACARIGALMCGKEIHAHVLR-TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVA--- 566 (857)
T ss_pred HHHHHHHhhhchHHHhHHHHHHHHH-hCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHH---
Confidence 9999999999999999999999998 599999999999999999999999999999998 7899999999999999
Q ss_pred CCCHHHHHHHHHHHHhhC-CCCCchHHHHHHHHHhcCCchHHHHHHHHHH-hCCCccCCcccEEEECCEEEEEEeCCCCC
Q 048578 415 GANVELAEIAMERLIKLE-PFNDGNYVLMSNIYAAKAQWDDAGKMRRLMK-ERNIVKNPGCSVIEINDVVHEFMVGDGRH 492 (519)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (519)
.|+.++|.++|++|.+.+ .+|..+|..++.+|.+.|++++|.++|+.|. +.|+.|+..++.. ++....+.
T Consensus 567 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~--------lv~~l~r~ 638 (857)
T PLN03077 567 HGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYAC--------VVDLLGRA 638 (857)
T ss_pred cCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHH--------HHHHHHhC
Confidence 999999999999998876 4468899999999999999999999999998 6788887665532 22344567
Q ss_pred CChhHHHHHHHHH
Q 048578 493 PCSEEIYSMLEYV 505 (519)
Q Consensus 493 ~~~~~~~~~~~~~ 505 (519)
+..+++.+.+++|
T Consensus 639 G~~~eA~~~~~~m 651 (857)
T PLN03077 639 GKLTEAYNFINKM 651 (857)
T ss_pred CCHHHHHHHHHHC
Confidence 7788888887776
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-60 Score=490.81 Aligned_cols=440 Identities=17% Similarity=0.225 Sum_probs=407.2
Q ss_pred CCCcccHHHHHHhc---cCchHHHHHHHHHHHhcC-CCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCCCCCcchHHHH
Q 048578 27 ATKSHHHLPLLQKC---THLVQFKQVHAQIIKASF-DNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIINPSTFAFNTV 102 (519)
Q Consensus 27 ~p~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l 102 (519)
+++...|..++..+ ++..++.++++.|.+.|+ +++..+++.++..|.+. |.+++|..+|+.|..||..+|+.+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~---g~~~eAl~lf~~M~~pd~~Tyn~L 443 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQ---RAVKEAFRFAKLIRNPTLSTFNML 443 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHC---CCHHHHHHHHHHcCCCCHHHHHHH
Confidence 45566777777776 677788999999999995 56788888999999998 999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccc---hHHHHHHHHHhCCCCCchhHHHHHHHHHHhcCC
Q 048578 103 IRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQ---VKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGD 179 (519)
Q Consensus 103 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 179 (519)
|.+|++.|+++.|.++|++|.+.|+.||..+|+.++.+|++.|+ +.++++.|.+.+ +.|+..+|+.+|.+|++.|+
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G-v~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG-VEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999999999999999999999 555666667776 89999999999999999999
Q ss_pred hHHHHHHHhcCCC----CchhHHHHHHHHHHHcCChhHHHHHHHHHHh--CCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 048578 180 VKSAQLLFDQMTE----KNVVTWTAMINGHVKQKNYREGIDLFRKMRD--SGVEVNELTLVSVLSACANLGASELGKWVH 253 (519)
Q Consensus 180 ~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 253 (519)
+++|.++|+.|.+ ||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|+++.|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999964 8999999999999999999999999999986 579999999999999999999999999999
Q ss_pred HHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcC----CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 048578 254 EFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVL----EKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKP 329 (519)
Q Consensus 254 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p 329 (519)
+.|.+.|++|+..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.+++++|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999995 4789999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC---CCCCCHHHHHHHH
Q 048578 330 DDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM---PMEPNAVLWGSLL 406 (519)
Q Consensus 330 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~p~~~~~~~ll 406 (519)
|..+|+.+|.+|++.|++++|.++|++|.+ .++.||..+|+.||.+|++.|++++|.++|++| |+.||..||+.++
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~-~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKS-IKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 999999999999999999999999999998 599999999999999999999999999999999 8999999999999
Q ss_pred HHHccccCCCCHHHHHHHHHHHHhhC-CCCCchHHHHHHHHH----hcC-------------------CchHHHHHHHHH
Q 048578 407 TACASADDGANVELAEIAMERLIKLE-PFNDGNYVLMSNIYA----AKA-------------------QWDDAGKMRRLM 462 (519)
Q Consensus 407 ~~~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~----~~g-------------------~~~~A~~~~~~m 462 (519)
.+|.+ .|+++.|.+++++|.+.+ .+|..+|+.++..+. +++ ..++|..+|++|
T Consensus 762 ~a~~k---~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM 838 (1060)
T PLN03218 762 VASER---KDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRET 838 (1060)
T ss_pred HHHHH---CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHH
Confidence 99999 999999999999999987 446788988876643 222 236799999999
Q ss_pred HhCCCccCCccc
Q 048578 463 KERNIVKNPGCS 474 (519)
Q Consensus 463 ~~~~~~~~~~~~ 474 (519)
.+.|+.|+..++
T Consensus 839 ~~~Gi~Pd~~T~ 850 (1060)
T PLN03218 839 ISAGTLPTMEVL 850 (1060)
T ss_pred HHCCCCCCHHHH
Confidence 999999996544
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-60 Score=487.64 Aligned_cols=437 Identities=17% Similarity=0.238 Sum_probs=400.7
Q ss_pred CCcccHHHHHHhccCchHH---HHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCC----CCCcchHH
Q 048578 28 TKSHHHLPLLQKCTHLVQF---KQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQII----NPSTFAFN 100 (519)
Q Consensus 28 p~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~ 100 (519)
|+..||+.+|.+|++.++. .++++.|.+.|+.||..+|+.|+.+|++. |++++|.++|++|. .||..+|+
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~---G~vd~A~~vf~eM~~~Gv~PdvvTyn 511 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKS---GKVDAMFEVFHEMVNAGVEANVHTFG 511 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC---cCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 8999999999999655554 88999999999999999999999999999 99999999999995 58999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHHHHHh----CCCCCchhHHHHHHHHHHh
Q 048578 101 TVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKS----KDFNSVIHSLTRLITFYCN 176 (519)
Q Consensus 101 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~ 176 (519)
.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+.+++.+.+.+. .++.|+..+|++++.+|++
T Consensus 512 aLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k 591 (1060)
T PLN03218 512 ALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACAN 591 (1060)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999955555544332 2378999999999999999
Q ss_pred cCChHHHHHHHhcCCC----CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 048578 177 FGDVKSAQLLFDQMTE----KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWV 252 (519)
Q Consensus 177 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 252 (519)
.|++++|.++|+.|.+ |+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++
T Consensus 592 ~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l 671 (1060)
T PLN03218 592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEI 671 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 9999999999999976 678999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhc----CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 048578 253 HEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIV----LEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIK 328 (519)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 328 (519)
++.|.+.|+.|+..+|++++.+|++.|++++|.++|++| ..||..+|+.||.+|++.|++++|.++|++|.+.|+.
T Consensus 672 ~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~ 751 (1060)
T PLN03218 672 LQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLC 751 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999999 4689999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHh----c-------------------CChHH
Q 048578 329 PDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCR----A-------------------RLLDE 385 (519)
Q Consensus 329 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------~~~~~ 385 (519)
||..||+.++.+|++.|+++.|.++|..|.+ .|+.||..+|+.++..|.+ + +..++
T Consensus 752 Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k-~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~ 830 (1060)
T PLN03218 752 PNTITYSILLVASERKDDADVGLDLLSQAKE-DGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSW 830 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHH
Confidence 9999999999999999999999999999998 5999999999999876432 1 12467
Q ss_pred HHHHHHhC---CCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhC-CCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 048578 386 AYEVIRNM---PMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLE-PFNDGNYVLMSNIYAAKAQWDDAGKMRRL 461 (519)
Q Consensus 386 A~~~~~~~---~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (519)
|..+|++| |+.||..||+.++.++.. .+..+.+..+++.+.... +.+..+|+.++.++.+. .++|..++++
T Consensus 831 Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~---~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~e 905 (1060)
T PLN03218 831 ALMVYRETISAGTLPTMEVLSQVLGCLQL---PHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEE 905 (1060)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhcc---cccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHH
Confidence 99999999 999999999999977767 788899988888766443 55788999999988432 3689999999
Q ss_pred HHhCCCccCCcc
Q 048578 462 MKERNIVKNPGC 473 (519)
Q Consensus 462 m~~~~~~~~~~~ 473 (519)
|...|+.|+...
T Consensus 906 m~~~Gi~p~~~~ 917 (1060)
T PLN03218 906 AASLGVVPSVSF 917 (1060)
T ss_pred HHHcCCCCCccc
Confidence 999999998763
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-53 Score=439.43 Aligned_cols=399 Identities=27% Similarity=0.414 Sum_probs=372.7
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCcchHHHHHHHHcCccc---hHHHHHHHHHhCCCCCchhHHH
Q 048578 93 NPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNG-LDPDSFTYPILLKACGDLRQ---VKGVHSLVVKSKDFNSVIHSLT 168 (519)
Q Consensus 93 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 168 (519)
.++..+|+.+|.++.+.|++++|+++|++|...+ +.||..+|+.++.+|++.++ +.+++..+.+.+ +.|+..+|+
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-~~~~~~~~n 162 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG-FEPDQYMMN 162 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCcchHHHH
Confidence 3577799999999999999999999999999864 78999999999999999888 678888888888 999999999
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHH
Q 048578 169 RLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASEL 248 (519)
Q Consensus 169 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 248 (519)
.++.+|++.|++++|.++|++|.+||..+||+++.+|++.|++++|+++|++|.+.|+.|+..||+.++.+|++.|..+.
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 048578 249 GKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIK 328 (519)
Q Consensus 249 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 328 (519)
+.+++..+.+.|+.++..++++|+.+|++.|++++|.++|++|.++|..+|+.++.+|++.|++++|.++|++|.+.|+.
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048578 329 PDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTA 408 (519)
Q Consensus 329 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~ 408 (519)
||..||+.++.+|++.|++++|.+++..+.+ .|+.||..+|+.|+.+|+++|++++|.++|++|. +||..+|+++|.+
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~-~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~lI~~ 400 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIR-TGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALIAG 400 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHH-hCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHHHHH
Confidence 9999999999999999999999999999999 5999999999999999999999999999999996 5899999999999
Q ss_pred HccccCCCCHHHHHHHHHHHHhhC-CCCCchHHHHHHHHHhcCCchHHHHHHHHHHh-CCCccCCcccEEEECCEEEEEE
Q 048578 409 CASADDGANVELAEIAMERLIKLE-PFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKE-RNIVKNPGCSVIEINDVVHEFM 486 (519)
Q Consensus 409 ~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~~~~~~~~~~~~~~~ 486 (519)
|++ .|+.++|.++|++|.+.+ .+|..+|..++.+|.+.|++++|.++|+.|.+ .|+.|+...+.. ++
T Consensus 401 y~~---~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~--------li 469 (697)
T PLN03081 401 YGN---HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYAC--------MI 469 (697)
T ss_pred HHH---cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHh--------HH
Confidence 999 999999999999999877 44689999999999999999999999999976 689887665532 23
Q ss_pred eCCCCCCChhHHHHHHHHH
Q 048578 487 VGDGRHPCSEEIYSMLEYV 505 (519)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~ 505 (519)
....+.+..+++.++++++
T Consensus 470 ~~l~r~G~~~eA~~~~~~~ 488 (697)
T PLN03081 470 ELLGREGLLDEAYAMIRRA 488 (697)
T ss_pred HHHHhcCCHHHHHHHHHHC
Confidence 3455677788887776543
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.1e-26 Score=243.60 Aligned_cols=442 Identities=13% Similarity=0.068 Sum_probs=331.3
Q ss_pred cCchHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChhHHHH
Q 048578 41 THLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIIN---PSTFAFNTVIRGYAEAGLGHRGIQ 117 (519)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~ 117 (519)
.....+..+++.+.+. .+.++.++..+...+... |++++|...|+++.+ .+...+..+...+...|++++|.+
T Consensus 445 ~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 520 (899)
T TIGR02917 445 GQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGK---GDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQ 520 (899)
T ss_pred CCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhC---CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 3334444555555433 345666777777777777 788888887777632 344556667777777888888888
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHHHHHhCCC-CCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---C
Q 048578 118 LYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKSKDF-NSVIHSLTRLITFYCNFGDVKSAQLLFDQMTE---K 193 (519)
Q Consensus 118 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~ 193 (519)
.|+++.+.+ +.+..++..+...+...|+.+++...+.+.-.. +.+...+..++..|...|++++|..+++.+.. .
T Consensus 521 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 599 (899)
T TIGR02917 521 RFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPD 599 (899)
T ss_pred HHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 888877643 234556667777777777766666655543222 33456677778888888888888888887754 4
Q ss_pred chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHH
Q 048578 194 NVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTD 273 (519)
Q Consensus 194 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 273 (519)
+...|..+..++...|++++|...|+++.+.. +.+...+..+..++.+.|++++|...++.+.+.. +.+...+..++.
T Consensus 600 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 677 (899)
T TIGR02917 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQ 677 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 56678888888888888888888888887653 3356677777888888888888888888887764 556777888888
Q ss_pred HHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH
Q 048578 274 MYAKCGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKG 350 (519)
Q Consensus 274 ~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a 350 (519)
.+...|++++|.++++.+.+ .+...+..+...+...|++++|...|+++... .|+..++..++.++.+.|++++|
T Consensus 678 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A 755 (899)
T TIGR02917 678 LLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEA 755 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHH
Confidence 88888888888888888754 25566777888888999999999999998875 45557777888889999999999
Q ss_pred HHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHH
Q 048578 351 KEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERL 428 (519)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~ 428 (519)
...++.+.+ ..+.+...+..+...|...|++++|.+.|+++ ...| +...+..+...+.. .|+ ++|...++++
T Consensus 756 ~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---~~~-~~A~~~~~~~ 829 (899)
T TIGR02917 756 VKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLE---LKD-PRALEYAEKA 829 (899)
T ss_pred HHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh---cCc-HHHHHHHHHH
Confidence 999999887 45667888889999999999999999999998 3344 56788888888888 788 7899999999
Q ss_pred HhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCCChhHHHHHHHHHH
Q 048578 429 IKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPGCSVIEINDVVHEFMVGDGRHPCSEEIYSMLEYVA 506 (519)
Q Consensus 429 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (519)
.+..|+++..+..++.++...|++++|.++++++.+.+.. ++.+.. .+.......++.+++.+.++.+.
T Consensus 830 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~--------~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 830 LKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRY--------HLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHH--------HHHHHHHHcCCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999987764 333321 01222334677788888877763
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-25 Score=240.71 Aligned_cols=422 Identities=13% Similarity=0.059 Sum_probs=356.6
Q ss_pred CcccHHHHHHhc---cCchHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCCC---CCcchHHHH
Q 048578 29 KSHHHLPLLQKC---THLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIIN---PSTFAFNTV 102 (519)
Q Consensus 29 ~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l 102 (519)
+..++..+-..+ .+...+...++.+.+.. +.+...+..+...+... |++++|.+.|+.+.. .+..++..+
T Consensus 464 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~l 539 (899)
T TIGR02917 464 NASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQE---GNPDDAIQRFEKVLTIDPKNLRAILAL 539 (899)
T ss_pred CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 444454444443 55556677777777654 44566777888888888 999999999998843 466788899
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHHHHHhCC-CCCchhHHHHHHHHHHhcCChH
Q 048578 103 IRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKSKD-FNSVIHSLTRLITFYCNFGDVK 181 (519)
Q Consensus 103 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~ 181 (519)
...+.+.|++++|...++++.+.+ +.+...+..+...+...|+.+++...+.+... .+.+...+..+..+|...|+++
T Consensus 540 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 618 (899)
T TIGR02917 540 AGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLN 618 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999998854 34556777888889999997777776655432 3456788999999999999999
Q ss_pred HHHHHHhcCCC---CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 048578 182 SAQLLFDQMTE---KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNK 258 (519)
Q Consensus 182 ~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 258 (519)
+|...|+.+.+ .+...+..+..++.+.|++++|...|+++.+.. +.+..++..+...+...|+++.|..+++.+.+
T Consensus 619 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 697 (899)
T TIGR02917 619 KAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQK 697 (899)
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999998864 356788899999999999999999999998764 44578899999999999999999999999988
Q ss_pred cCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 048578 259 NCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLE--KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIA 336 (519)
Q Consensus 259 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 336 (519)
.. +.+...+..+...+...|++++|.+.|+.+.. |+..++..++..+.+.|++++|.+.++++.+.. +.+...+..
T Consensus 698 ~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~ 775 (899)
T TIGR02917 698 QH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTA 775 (899)
T ss_pred hC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 76 66778888899999999999999999999854 555778888999999999999999999998764 556779999
Q ss_pred HHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccC
Q 048578 337 VLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADD 414 (519)
Q Consensus 337 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~ 414 (519)
+...|...|++++|...|+++.+ ..+++...++.++..+...|+ ++|++.++++ ...| +..++..+...+..
T Consensus 776 la~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 849 (899)
T TIGR02917 776 LAELYLAQKDYDKAIKHYRTVVK--KAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVE--- 849 (899)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHH---
Confidence 99999999999999999999988 346778899999999999999 8899999988 5555 44566777777888
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048578 415 GANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
.|++++|...++++++.+|.++.++..++.++.+.|++++|.+++++|.+
T Consensus 850 ~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 850 KGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999863
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-20 Score=175.07 Aligned_cols=375 Identities=13% Similarity=0.142 Sum_probs=300.2
Q ss_pred CchhHHHHHHHHHhhcCCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchH---
Q 048578 61 RTISDTQLAKLIESLVNSSQIAYAHLVFNQIIN---PSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTY--- 134 (519)
Q Consensus 61 ~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~--- 134 (519)
-..+|+.+.+.+... |++++|+.+++.+++ ..+..|..+..++...|+.+.|...|-+..+ +.|+....
T Consensus 115 ~ae~ysn~aN~~ker---g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~ 189 (966)
T KOG4626|consen 115 GAEAYSNLANILKER---GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSD 189 (966)
T ss_pred HHHHHHHHHHHHHHh---chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcc
Confidence 356788888888888 999999999988854 3567888899999999999999999988887 44655443
Q ss_pred -HHHHHHHcCccchHHHHHHHHHhCCCCCc-hhHHHHHHHHHHhcCChHHHHHHHhcCCCCc---hhHHHHHHHHHHHcC
Q 048578 135 -PILLKACGDLRQVKGVHSLVVKSKDFNSV-IHSLTRLITFYCNFGDVKSAQLLFDQMTEKN---VVTWTAMINGHVKQK 209 (519)
Q Consensus 135 -~~ll~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~ 209 (519)
..++++. |+..++..-..+.-...|. ...|..|...+-..|+...|+..|++...-| ..+|-.|...|...+
T Consensus 190 lgnLlka~---Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~ 266 (966)
T KOG4626|consen 190 LGNLLKAE---GRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEAR 266 (966)
T ss_pred hhHHHHhh---cccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHh
Confidence 3344433 3444444444443324454 5678888888889999999999999887633 357888899999999
Q ss_pred ChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHH
Q 048578 210 NYREGIDLFRKMRDSGVEVN-ELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVF 288 (519)
Q Consensus 210 ~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 288 (519)
.+++|...|.+.... .|+ ...+..+...|...|++|.|...+++..... |.-+..|+.|..++...|++.+|.+.|
T Consensus 267 ~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cY 343 (966)
T KOG4626|consen 267 IFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCY 343 (966)
T ss_pred cchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHH
Confidence 999999999888765 444 5677788888889999999999999988875 445778999999999999999999999
Q ss_pred hhcCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCC
Q 048578 289 KIVLEK---NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDV-TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVE 364 (519)
Q Consensus 289 ~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 364 (519)
.+...- ...+.+.|...+...|.+++|..+|....+ +.|.-. .++.|...|-++|++++|+..+++..+ +.
T Consensus 344 nkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~ 418 (966)
T KOG4626|consen 344 NKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IK 418 (966)
T ss_pred HHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cC
Confidence 988552 456788899999999999999999998876 566644 788899999999999999999998875 55
Q ss_pred CC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHH
Q 048578 365 PN-VKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPNA-VLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVL 441 (519)
Q Consensus 365 ~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 441 (519)
|+ ...|+.+...|-..|+++.|.+.+.+. .+.|.- ..++.|...|.. .|++.+|+..++.++++.|+.+.+|-.
T Consensus 419 P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kD---sGni~~AI~sY~~aLklkPDfpdA~cN 495 (966)
T KOG4626|consen 419 PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKD---SGNIPEAIQSYRTALKLKPDFPDAYCN 495 (966)
T ss_pred chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhc---cCCcHHHHHHHHHHHccCCCCchhhhH
Confidence 65 578889999999999999999998887 777754 478888888888 999999999999999999999999998
Q ss_pred HHHHHHhcCCchH
Q 048578 442 MSNIYAAKAQWDD 454 (519)
Q Consensus 442 l~~~~~~~g~~~~ 454 (519)
++-++.-..+|.+
T Consensus 496 llh~lq~vcdw~D 508 (966)
T KOG4626|consen 496 LLHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHHHhcccc
Confidence 8888776666655
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.1e-21 Score=184.29 Aligned_cols=296 Identities=12% Similarity=0.020 Sum_probs=244.1
Q ss_pred HHHHHhcCChHHHHHHHhcCCC--C-chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhccC
Q 048578 171 ITFYCNFGDVKSAQLLFDQMTE--K-NVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVN---ELTLVSVLSACANLG 244 (519)
Q Consensus 171 ~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~ 244 (519)
...+...|++++|...|+++.+ | +..++..+...+...|++++|..+++.+...+..++ ...+..+...+.+.|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 3456778999999999999976 3 455788899999999999999999999987642222 246778888899999
Q ss_pred ChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh--------hhHHHHHHHHHHcCChHHHH
Q 048578 245 ASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNV--------CTWNSIIGGLAIHGCGEEAV 316 (519)
Q Consensus 245 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--------~~~~~l~~~~~~~g~~~~a~ 316 (519)
+++.|..+++.+.+.. +.+..++..++.++.+.|++++|.+.++.+.+.+. ..+..+...+...|++++|.
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 9999999999998764 56678899999999999999999999998865321 23556777888999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 048578 317 KMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PM 395 (519)
Q Consensus 317 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~ 395 (519)
..++++.+.. +.+...+..+...+.+.|++++|.++|+++.+. +......+++.++.+|...|++++|...++++ ..
T Consensus 201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999998753 334558888899999999999999999999873 22222467888999999999999999999998 66
Q ss_pred CCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHh---cCCchHHHHHHHHHHhCCCccCCc
Q 048578 396 EPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAA---KAQWDDAGKMRRLMKERNIVKNPG 472 (519)
Q Consensus 396 ~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~ 472 (519)
.|+...+..+...+.. .|++++|..+++++.+..|++. .+..++..+.. .|+.+++..++++|.++++.|+|.
T Consensus 279 ~p~~~~~~~la~~~~~---~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 YPGADLLLALAQLLEE---QEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCCchHHHHHHHHHHH---hCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 7887777888888999 9999999999999999999865 55555555553 569999999999999999998887
Q ss_pred c
Q 048578 473 C 473 (519)
Q Consensus 473 ~ 473 (519)
.
T Consensus 355 ~ 355 (389)
T PRK11788 355 Y 355 (389)
T ss_pred E
Confidence 3
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-20 Score=172.67 Aligned_cols=360 Identities=14% Similarity=0.114 Sum_probs=308.2
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-cchHHHHHHHHcCccchHHHHHHHHHhCCCCCchhHH-HHHHHH
Q 048578 96 TFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPD-SFTYPILLKACGDLRQVKGVHSLVVKSKDFNSVIHSL-TRLITF 173 (519)
Q Consensus 96 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~ 173 (519)
..+|..+...+-..|+++.|+.+++.+.+ ++|+ ...|..+-.++...|+...+.+.+...-.+.|+.... ..+...
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aie--l~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnL 193 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIE--LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNL 193 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHh--cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHH
Confidence 36788999999999999999999999998 4554 4578888889999999777777666554467765443 445566
Q ss_pred HHhcCChHHHHHHHhcCCC--Cc-hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCChHHH
Q 048578 174 YCNFGDVKSAQLLFDQMTE--KN-VVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVN-ELTLVSVLSACANLGASELG 249 (519)
Q Consensus 174 ~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a 249 (519)
+...|++++|...+.+..+ |. ...|..|.-.+-.+|+.-.|++.|++..+. .|+ ...|-.|...|...+.++.|
T Consensus 194 lka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~A 271 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRA 271 (966)
T ss_pred HHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHH
Confidence 7778999999999988765 33 457999999999999999999999999875 444 56888999999999999999
Q ss_pred HHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 048578 250 KWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKN---VCTWNSIIGGLAIHGCGEEAVKMFWQMQMSG 326 (519)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 326 (519)
...+....... +....++..+...|...|.++-|++.|++..+.+ +.+|+.|..++-..|++.+|++.+.+....
T Consensus 272 vs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l- 349 (966)
T KOG4626|consen 272 VSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL- 349 (966)
T ss_pred HHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh-
Confidence 99999988764 5567788889999999999999999999997643 468999999999999999999999998874
Q ss_pred CCCCH-HHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHH
Q 048578 327 IKPDD-VTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPNA-VLWG 403 (519)
Q Consensus 327 ~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~-~~~~ 403 (519)
.|+. ...+.|..++...|.++.|..+|....+ -.+--....+.|...|-.+|++++|+..|++. .++|+- ..++
T Consensus 350 -~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~ 426 (966)
T KOG4626|consen 350 -CPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALS 426 (966)
T ss_pred -CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHH
Confidence 5554 5899999999999999999999999987 23334567899999999999999999999998 899975 4899
Q ss_pred HHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 404 SLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 404 ~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
.+...|.. .|+.+.|.+.+.+++..+|.-..+++.|+.+|...|+..+|+.-++...+...
T Consensus 427 NmGnt~ke---~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 427 NMGNTYKE---MGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred hcchHHHH---hhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 99999999 99999999999999999999999999999999999999999999999876443
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.1e-19 Score=192.68 Aligned_cols=232 Identities=11% Similarity=0.049 Sum_probs=144.5
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH-----------
Q 048578 272 TDMYAKCGYIEEALRVFKIVLEK---NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAV----------- 337 (519)
Q Consensus 272 ~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l----------- 337 (519)
...+...|++++|++.|++..+. +...+..+...+.+.|++++|...++++.+.. +.+...+..+
T Consensus 468 a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~ 546 (1157)
T PRK11447 468 AEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDR 546 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHH
Confidence 33445566667777666666432 33455556666666677777776666665432 1122222222
Q ss_pred ---------------------------------HHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChH
Q 048578 338 ---------------------------------LTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLD 384 (519)
Q Consensus 338 ---------------------------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 384 (519)
...+...|+.++|..+++. .+.+...+..+...+.+.|+++
T Consensus 547 ~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~ 620 (1157)
T PRK11447 547 AALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYA 620 (1157)
T ss_pred HHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHH
Confidence 2334444555555554441 2344556677888888899999
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 048578 385 EAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLM 462 (519)
Q Consensus 385 ~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 462 (519)
+|++.|++. ...| +...+..+...+.. .|++++|.+.++++.+..|+++..+..++.++...|++++|.++++++
T Consensus 621 ~A~~~y~~al~~~P~~~~a~~~la~~~~~---~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 697 (1157)
T PRK11447 621 AARAAYQRVLTREPGNADARLGLIEVDIA---QGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRL 697 (1157)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 999988888 5556 45677888888888 888999999999888888888888888899999999999999999988
Q ss_pred HhCCCccCCcccEEEECCEEEEEEeCCCCCCChhHHHHHHHHHHHHHHhcccCCCCC
Q 048578 463 KERNIVKNPGCSVIEINDVVHEFMVGDGRHPCSEEIYSMLEYVAISLREECYAARMP 519 (519)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 519 (519)
........+......+. .....-....++.+++...+++.. ...|..|+.|
T Consensus 698 l~~~~~~~~~~~~a~~~---~~~a~~~~~~G~~~~A~~~y~~Al---~~~~~~~~~p 748 (1157)
T PRK11447 698 IPQAKSQPPSMESALVL---RDAARFEAQTGQPQQALETYKDAM---VASGITPTRP 748 (1157)
T ss_pred hhhCccCCcchhhHHHH---HHHHHHHHHcCCHHHHHHHHHHHH---hhcCCCCCCC
Confidence 76543322211000000 000111234566777777666653 4446666543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.89 E-value=3e-19 Score=181.96 Aligned_cols=387 Identities=14% Similarity=0.032 Sum_probs=264.4
Q ss_pred HHHHHHhhcCCCChHHHHHHHhcCC--CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-cchHHHHHHHHcCc
Q 048578 68 LAKLIESLVNSSQIAYAHLVFNQII--NPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPD-SFTYPILLKACGDL 144 (519)
Q Consensus 68 ll~~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~ 144 (519)
....+.+. |++++|+..|++.+ .|+...|..+..+|.+.|++++|++.+++..+. .|+ ...|..+-.++...
T Consensus 133 ~G~~~~~~---~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 133 KGNKAYRN---KDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHc---CCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHc
Confidence 33444444 67777777776653 355556666666666777777777777666663 233 23555555666666
Q ss_pred cchHHHHHHHHHhCCCCC-chhHHHHHHHHHHhcCChHHHHHHHhcCCC--Cchh-------------------------
Q 048578 145 RQVKGVHSLVVKSKDFNS-VIHSLTRLITFYCNFGDVKSAQLLFDQMTE--KNVV------------------------- 196 (519)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~------------------------- 196 (519)
|+.+++...+......++ +......++..+........+...++.-.. +...
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELD 287 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccc
Confidence 665555443322210111 111111111111111111122222211111 0000
Q ss_pred -----HHHHHHHH---HHHcCChhHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchh
Q 048578 197 -----TWTAMING---HVKQKNYREGIDLFRKMRDSG-VEV-NELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDK 266 (519)
Q Consensus 197 -----~~~~li~~---~~~~~~~~~a~~~~~~m~~~~-~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 266 (519)
.+..+... ....+++++|.+.|+...+.+ ..| ....+..+...+...|+++.|...++...... +.+..
T Consensus 288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~ 366 (615)
T TIGR00990 288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQ 366 (615)
T ss_pred cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHH
Confidence 00000000 012367899999999998764 233 34567777788889999999999999998875 44567
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 048578 267 LGAALTDMYAKCGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSH 343 (519)
Q Consensus 267 ~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 343 (519)
.+..+..++...|++++|...|+++.+ .+...|..+...+...|++++|...|++..+.. +.+...+..+..++.+
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~ 445 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYK 445 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHH
Confidence 888899999999999999999998854 356789999999999999999999999998753 3345678888999999
Q ss_pred cCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-H-------HHHHHHHHHccccC
Q 048578 344 AGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPNA-V-------LWGSLLTACASADD 414 (519)
Q Consensus 344 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~-~-------~~~~ll~~~~~~~~ 414 (519)
.|++++|+..|+...+ ..+.+...|+.+..++...|++++|++.|++. .+.|+. . .++..+..+..
T Consensus 446 ~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~--- 520 (615)
T TIGR00990 446 EGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQW--- 520 (615)
T ss_pred CCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHH---
Confidence 9999999999999987 34556788999999999999999999999987 444431 1 11222223344
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048578 415 GANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
.|++++|.++++++++.+|++..++..++.++.+.|++++|.+.|++..+..
T Consensus 521 ~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 521 KQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 6899999999999999999998999999999999999999999999987643
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5e-18 Score=184.31 Aligned_cols=350 Identities=11% Similarity=0.010 Sum_probs=233.9
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHHHHHhCCCCC-chhHHHHHHHHHHhcCChHHHH
Q 048578 106 YAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKSKDFNS-VIHSLTRLITFYCNFGDVKSAQ 184 (519)
Q Consensus 106 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 184 (519)
+.+.|++++|+..|++..+.. +.+...+..+-..+...|+.+++.+.+.+.-...| +...+..+...|. .++.++|.
T Consensus 361 ~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~ 438 (1157)
T PRK11447 361 ALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKAL 438 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHH
Confidence 344555555555555555431 11222333344444444444443333333221222 2333333444332 23445555
Q ss_pred HHHhcCCCCc------------hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 048578 185 LLFDQMTEKN------------VVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWV 252 (519)
Q Consensus 185 ~~~~~~~~~~------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 252 (519)
.+++.+.... ...+..+...+...|++++|++.|++..+.. +-+...+..+...+.+.|++++|...
T Consensus 439 ~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~ 517 (1157)
T PRK11447 439 AFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADAL 517 (1157)
T ss_pred HHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5554443210 1123334556667888888888888887753 22455666777788888888888888
Q ss_pred HHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC----h---------hhHHHHHHHHHHcCChHHHHHHH
Q 048578 253 HEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKN----V---------CTWNSIIGGLAIHGCGEEAVKMF 319 (519)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~---------~~~~~l~~~~~~~g~~~~a~~~~ 319 (519)
++.+.+.. +.++..+..+...+...++.++|+..++.+.... . ..+..+...+...|++++|..++
T Consensus 518 l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l 596 (1157)
T PRK11447 518 MRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALL 596 (1157)
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 88887654 3455555555666777888888888888775421 1 11234456778889999999988
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 048578 320 WQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPN 398 (519)
Q Consensus 320 ~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~ 398 (519)
+. .+++...+..+...+.+.|++++|+..|+++.+ .-+.+...+..++..|...|++++|++.++.. ...|+
T Consensus 597 ~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~ 669 (1157)
T PRK11447 597 RQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT--REPGNADARLGLIEVDIAQGDLAAARAQLAKLPATAND 669 (1157)
T ss_pred Hh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC
Confidence 72 244556778889999999999999999999998 34556888999999999999999999999988 55664
Q ss_pred -HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCC------chHHHHHHHHHhcCCchHHHHHHHHHHh-CCCcc
Q 048578 399 -AVLWGSLLTACASADDGANVELAEIAMERLIKLEPFND------GNYVLMSNIYAAKAQWDDAGKMRRLMKE-RNIVK 469 (519)
Q Consensus 399 -~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~~~ 469 (519)
...+..+..++.. .|++++|.++++++++..|.++ ..+..++.++...|++++|+..|++... .++.|
T Consensus 670 ~~~~~~~la~~~~~---~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 670 SLNTQRRVALAWAA---LGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred ChHHHHHHHHHHHh---CCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 4456667777888 9999999999999998876544 3566779999999999999999999863 34443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.5e-19 Score=170.56 Aligned_cols=292 Identities=14% Similarity=0.095 Sum_probs=219.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHH
Q 048578 103 IRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKS 182 (519)
Q Consensus 103 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 182 (519)
...+...|++++|+..|.++.+.+ +.+..++..+...+...|++++
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~----------------------------------p~~~~~~~~la~~~~~~g~~~~ 87 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD----------------------------------PETVELHLALGNLFRRRGEVDR 87 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC----------------------------------cccHHHHHHHHHHHHHcCcHHH
Confidence 445567788888888888888732 2233455666667777788888
Q ss_pred HHHHHhcCCC-Cc------hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 048578 183 AQLLFDQMTE-KN------VVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEF 255 (519)
Q Consensus 183 A~~~~~~~~~-~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 255 (519)
|..+++.+.. ++ ...+..+...|.+.|++++|..+|+++.+.. +.+..++..++..+.+.|++++|...++.
T Consensus 88 A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 166 (389)
T PRK11788 88 AIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAER 166 (389)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence 8877777654 21 2356777788888888888888888887652 34566777788888888888888888888
Q ss_pred HHHcCCCcc----hhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 048578 256 VNKNCIILN----DKLGAALTDMYAKCGYIEEALRVFKIVLEK---NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIK 328 (519)
Q Consensus 256 ~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 328 (519)
+.+.+..+. ...+..+...+.+.|++++|...|+++.+. +...+..+...+.+.|++++|.++++++.+.+..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 246 (389)
T PRK11788 167 LEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPE 246 (389)
T ss_pred HHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChh
Confidence 877653221 224456777788889999999999887542 4557778889999999999999999999875322
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHH
Q 048578 329 PDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPNAVLWGSLLT 407 (519)
Q Consensus 329 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~~~~~ll~ 407 (519)
....++..++.+|...|++++|...++++.+. .|+...+..++..+.+.|++++|..+++++ ...|+..++..++.
T Consensus 247 ~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~ 323 (389)
T PRK11788 247 YLSEVLPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLD 323 (389)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 22457888999999999999999999998873 466667788999999999999999999887 76899999998888
Q ss_pred HHccccCCCCHHHHHHHHHHHHhhC
Q 048578 408 ACASADDGANVELAEIAMERLIKLE 432 (519)
Q Consensus 408 ~~~~~~~~~~~~~a~~~~~~~~~~~ 432 (519)
.+....+.|+.+++..+++++.+..
T Consensus 324 ~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 324 YHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred HhhhccCCccchhHHHHHHHHHHHH
Confidence 7664222457888888888887633
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.2e-18 Score=172.37 Aligned_cols=265 Identities=11% Similarity=0.001 Sum_probs=206.6
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048578 163 VIHSLTRLITFYCNFGDVKSAQLLFDQMTE--K-NVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSA 239 (519)
Q Consensus 163 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 239 (519)
+...+..+...+...|++++|...|++... | +...+..+...+...|++++|...++.+......+ ...+..+ ..
T Consensus 109 ~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~ 186 (656)
T PRK15174 109 QPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LS 186 (656)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HH
Confidence 455677777888899999999999988865 3 45678888889999999999999998887654332 2233233 34
Q ss_pred HhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHHcCChHH--
Q 048578 240 CANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEK---NVCTWNSIIGGLAIHGCGEE-- 314 (519)
Q Consensus 240 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~-- 314 (519)
+...|++++|...++.+.+....++......+..++...|++++|+..++++.+. +...+..+...+...|++++
T Consensus 187 l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~ 266 (656)
T PRK15174 187 FLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAK 266 (656)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhH
Confidence 7788999999999998877653344455556677888999999999999887552 56677888899999999986
Q ss_pred --HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 048578 315 --AVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRN 392 (519)
Q Consensus 315 --a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 392 (519)
|...+++..+.. +.+...+..+...+...|++++|...+++..+. .+.+...+..+..++.+.|++++|...|++
T Consensus 267 ~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~ 343 (656)
T PRK15174 267 LQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQ 343 (656)
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 799999988742 334558888999999999999999999998872 344566777889999999999999999998
Q ss_pred C-CCCCCHHHHH-HHHHHHccccCCCCHHHHHHHHHHHHhhCCCC
Q 048578 393 M-PMEPNAVLWG-SLLTACASADDGANVELAEIAMERLIKLEPFN 435 (519)
Q Consensus 393 ~-~~~p~~~~~~-~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (519)
+ ...|+...+. .+..++.. .|+.++|...|+++++..|++
T Consensus 344 al~~~P~~~~~~~~~a~al~~---~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 344 LAREKGVTSKWNRYAAAALLQ---AGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HHHhCccchHHHHHHHHHHHH---CCCHHHHHHHHHHHHHhChhh
Confidence 8 5567654433 34556777 899999999999999998874
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-17 Score=169.82 Aligned_cols=347 Identities=10% Similarity=-0.013 Sum_probs=274.1
Q ss_pred CChHHHHHHHhcCCC------CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHH
Q 048578 79 SQIAYAHLVFNQIIN------PSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHS 152 (519)
Q Consensus 79 ~~~~~A~~~~~~~~~------~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~ 152 (519)
.+|+.-.-+|...++ .+......++..+.+.|++++|+.++......
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~--------------------------- 71 (656)
T PRK15174 19 EDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLT--------------------------- 71 (656)
T ss_pred hchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHh---------------------------
Confidence 455555555555432 23334556677888899999999999888874
Q ss_pred HHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC
Q 048578 153 LVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTE--K-NVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVN 229 (519)
Q Consensus 153 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 229 (519)
.+-.......++.+....|++++|...|+++.. | +...+..+...+.+.|++++|...+++..+.. +.+
T Consensus 72 -------~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~ 143 (656)
T PRK15174 72 -------AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGN 143 (656)
T ss_pred -------CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCc
Confidence 222334444555556779999999999999876 3 45678888999999999999999999998763 334
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC----hhhHHHHHHH
Q 048578 230 ELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKN----VCTWNSIIGG 305 (519)
Q Consensus 230 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~l~~~ 305 (519)
...+..+...+...|++++|...+..+..... .+...+..+ ..+...|++++|...++.+.+.+ ...+..+...
T Consensus 144 ~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~ 221 (656)
T PRK15174 144 SQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDT 221 (656)
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHH
Confidence 66788888899999999999999998877653 333344333 34788999999999999876532 3344555678
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHH----HHHHHHHcHHhcCCCCChhHHHHHHHHHHhcC
Q 048578 306 LAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEK----GKEIFYNMRRDYKVEPNVKHYGCLVDLLCRAR 381 (519)
Q Consensus 306 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 381 (519)
+...|++++|+..++++.+.. +.+...+..+...+...|++++ |...|++..+ ..+.+...+..+...+...|
T Consensus 222 l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g 298 (656)
T PRK15174 222 LCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTG 298 (656)
T ss_pred HHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCC
Confidence 889999999999999998764 4456688889999999999986 8999999987 34456778999999999999
Q ss_pred ChHHHHHHHHhC-CCCCC-HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHH
Q 048578 382 LLDEAYEVIRNM-PMEPN-AVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMR 459 (519)
Q Consensus 382 ~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 459 (519)
++++|...+++. ...|+ ...+..+...+.. .|++++|...++++.+.+|.++..+..++.++...|++++|.+.|
T Consensus 299 ~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~---~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l 375 (656)
T PRK15174 299 QNEKAIPLLQQSLATHPDLPYVRAMYARALRQ---VGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVF 375 (656)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999998 55665 4466677777888 999999999999999999998777777889999999999999999
Q ss_pred HHHHhCCCc
Q 048578 460 RLMKERNIV 468 (519)
Q Consensus 460 ~~m~~~~~~ 468 (519)
++..+....
T Consensus 376 ~~al~~~P~ 384 (656)
T PRK15174 376 EHYIQARAS 384 (656)
T ss_pred HHHHHhChh
Confidence 998876554
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6e-17 Score=168.18 Aligned_cols=380 Identities=11% Similarity=-0.016 Sum_probs=231.5
Q ss_pred CChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-cchHHHHHHHHcCccchHHHHHHH
Q 048578 79 SQIAYAHLVFNQIIN---PSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPD-SFTYPILLKACGDLRQVKGVHSLV 154 (519)
Q Consensus 79 ~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~~~~~~ 154 (519)
|+.++|++++..... .+...+..+...+...|++++|+++|++..+. .|+ ...+..+...+...|+..++...+
T Consensus 29 g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l~~~g~~~eA~~~l 106 (765)
T PRK10049 29 GQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTLADAGQYDEALVKA 106 (765)
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 555555555555432 12223555555555555555555555555542 222 223334444444555544444444
Q ss_pred HHhCCCCC-chhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH
Q 048578 155 VKSKDFNS-VIHSLTRLITFYCNFGDVKSAQLLFDQMTE--K-NVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNE 230 (519)
Q Consensus 155 ~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 230 (519)
.+.-...| +.. +..+..++...|+.++|+..++++.+ | +...+..+..++...+..++|++.++.... .|+.
T Consensus 107 ~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~ 182 (765)
T PRK10049 107 KQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAE 182 (765)
T ss_pred HHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHH
Confidence 33222233 344 66667777778888888888877765 3 344555666677777777778777765543 2221
Q ss_pred ------HHHHHHHHHHh-----ccCCh---HHHHHHHHHHHHc-CCCcchh-HH----HHHHHHHHhcCCHHHHHHHHhh
Q 048578 231 ------LTLVSVLSACA-----NLGAS---ELGKWVHEFVNKN-CIILNDK-LG----AALTDMYAKCGYIEEALRVFKI 290 (519)
Q Consensus 231 ------~~~~~ll~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~----~~l~~~~~~~g~~~~a~~~~~~ 290 (519)
.....++.... ..+++ +.|...++.+.+. ...|+.. .+ ...+.++...|++++|+..|+.
T Consensus 183 ~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ 262 (765)
T PRK10049 183 KRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQR 262 (765)
T ss_pred HHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 01111222221 11223 5666677776653 1122211 11 1112344566888888888888
Q ss_pred cCCCC---h-hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcC-
Q 048578 291 VLEKN---V-CTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKP---DDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYK- 362 (519)
Q Consensus 291 ~~~~~---~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~- 362 (519)
+.+.+ + ..-..+...+...|++++|+..|+++....-.. .......+..++...|++++|..+++.+.....
T Consensus 263 ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~ 342 (765)
T PRK10049 263 LKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPP 342 (765)
T ss_pred hhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCc
Confidence 86542 1 122224667888888888888888876542111 123455666677888888888888888876210
Q ss_pred ---------CCCC---hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHH
Q 048578 363 ---------VEPN---VKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERL 428 (519)
Q Consensus 363 ---------~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~ 428 (519)
-.|+ ...+..++..+...|+.++|++.++++ ...| +...+..+...+.. .|++++|++.++++
T Consensus 343 ~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~---~g~~~~A~~~l~~a 419 (765)
T PRK10049 343 FLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQA---RGWPRAAENELKKA 419 (765)
T ss_pred eEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHH
Confidence 0122 234456777888888999998888887 4455 45567777777777 88889999999998
Q ss_pred HhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 429 IKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 429 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
++..|++..++..++..+...|++++|+.+++++.+...
T Consensus 420 l~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 420 EVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred HhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 888888888888888888888899999998888876543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.8e-16 Score=161.16 Aligned_cols=434 Identities=10% Similarity=0.003 Sum_probs=292.1
Q ss_pred hhhhhhhhhccccCCCCCCCCCcccHHHHHHhccCchHHHHHHHHHHHhcCCCCchhHHHHHHH--------HHhhcCCC
Q 048578 8 NSQLTHFTNSANSHKNSNTATKSHHHLPLLQKCTHLVQFKQVHAQIIKASFDNRTISDTQLAKL--------IESLVNSS 79 (519)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~--------~~~~~~~~ 79 (519)
.++...++.+.. ..|+...|..++........+..+++.+.+.. +.+..++..+... |.+. +
T Consensus 95 ~~A~~~~~kAv~------ldP~n~~~~~~La~i~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---e 164 (987)
T PRK09782 95 DRARLLLEDQLK------RHPGDARLERSLAAIPVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---P 164 (987)
T ss_pred HHHHHHHHHHHh------cCcccHHHHHHHHHhccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---H
Confidence 344444444444 23555555555666667777777777777665 3345555555554 5555 5
Q ss_pred ChHHHHHHHhcCCCCC--cchHHHH-HHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcC-ccchHHHHHHHH
Q 048578 80 QIAYAHLVFNQIINPS--TFAFNTV-IRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGD-LRQVKGVHSLVV 155 (519)
Q Consensus 80 ~~~~A~~~~~~~~~~~--~~~~~~l-l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~~~~~~~~~~~~ 155 (519)
...++++ .+...|+ ..+.... ...|.+.|++++|++++.++.+.+.. +..-...+-.++.. .++ +.+.....
T Consensus 165 qAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~ 240 (987)
T PRK09782 165 VARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQS 240 (987)
T ss_pred HHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhc
Confidence 5555555 2333343 3333444 78888889999999999999886532 22334444445544 244 44444422
Q ss_pred HhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC-------------------------------------------
Q 048578 156 KSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTE------------------------------------------- 192 (519)
Q Consensus 156 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------------------------------------- 192 (519)
..+..+......++..|.+.|+.++|.++++++..
T Consensus 241 --~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (987)
T PRK09782 241 --QGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGA 318 (987)
T ss_pred --hhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHH
Confidence 22445677777888888888888888888877750
Q ss_pred ------------------------------------------------------C-chhHHHHHHHHHHHcCChhHHHHH
Q 048578 193 ------------------------------------------------------K-NVVTWTAMINGHVKQKNYREGIDL 217 (519)
Q Consensus 193 ------------------------------------------------------~-~~~~~~~li~~~~~~~~~~~a~~~ 217 (519)
| +......+.-...+.|+.++|.++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~ 398 (987)
T PRK09782 319 TLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADL 398 (987)
T ss_pred HHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHH
Confidence 0 000000001111223333333333
Q ss_pred HHHHHh--------------------------------------------------------------C-CC-CC--CHH
Q 048578 218 FRKMRD--------------------------------------------------------------S-GV-EV--NEL 231 (519)
Q Consensus 218 ~~~m~~--------------------------------------------------------------~-~~-~~--~~~ 231 (519)
|+.... . +. ++ +..
T Consensus 399 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~ 478 (987)
T PRK09782 399 LLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAA 478 (987)
T ss_pred HHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHH
Confidence 322211 0 01 22 456
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhhHHHHHHHHHHc
Q 048578 232 TLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLE--KNVCTWNSIIGGLAIH 309 (519)
Q Consensus 232 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~ 309 (519)
.+..+..++.. +++++|...+....... |+......+...+...|++++|...|+++.. ++...+..+...+.+.
T Consensus 479 a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~ 555 (987)
T PRK09782 479 AWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAA 555 (987)
T ss_pred HHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHC
Confidence 67777766666 78888999777777654 4444444456666789999999999998754 3445566777888999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 048578 310 GCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEV 389 (519)
Q Consensus 310 g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 389 (519)
|++++|...+++..+.+ +++...+..+.......|++++|...+++..+ ..|+...|..+..++.+.|++++|...
T Consensus 556 Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~ 631 (987)
T PRK09782 556 GNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSD 631 (987)
T ss_pred CCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999998754 22333444444555567999999999999987 346788899999999999999999999
Q ss_pred HHhC-CCCCCH-HHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 390 IRNM-PMEPNA-VLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 390 ~~~~-~~~p~~-~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
+++. ...|+. ..+..+..++.. .|++++|...++++++.+|+++.++..++.++...|++++|+..+++..+...
T Consensus 632 l~~AL~l~Pd~~~a~~nLG~aL~~---~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 632 LRAALELEPNNSNYQAALGYALWD---SGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 9998 777754 466666667888 89999999999999999999999999999999999999999999999976553
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-15 Score=156.20 Aligned_cols=379 Identities=9% Similarity=-0.027 Sum_probs=273.1
Q ss_pred cCchHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCCC--C-CcchHHHHHHHHHhcCChhHHHH
Q 048578 41 THLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIIN--P-STFAFNTVIRGYAEAGLGHRGIQ 117 (519)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~g~~~~a~~ 117 (519)
.+...+...++..++ +.|++..|..+...|.+. |++++|+..++...+ | +..+|..+..+|...|++++|+.
T Consensus 141 ~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l---~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~ 215 (615)
T TIGR00990 141 KDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNAL---GDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALL 215 (615)
T ss_pred CCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHh---CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 455555666666654 456788899999999999 999999999998854 3 45688889999999999999999
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHHHHHhC-----------------------------CCCCc-hhHH
Q 048578 118 LYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKSK-----------------------------DFNSV-IHSL 167 (519)
Q Consensus 118 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~-~~~~ 167 (519)
-|......+-..+. ....++...............+.... ...+. ...+
T Consensus 216 ~~~~~~~~~~~~~~-~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (615)
T TIGR00990 216 DLTASCIIDGFRNE-QSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQ 294 (615)
T ss_pred HHHHHHHhCCCccH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccch
Confidence 88776553211111 11111111000000000000000000 01111 0011
Q ss_pred HHHHHH---HHhcCChHHHHHHHhcCCC-----C-chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 048578 168 TRLITF---YCNFGDVKSAQLLFDQMTE-----K-NVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVN-ELTLVSVL 237 (519)
Q Consensus 168 ~~l~~~---~~~~g~~~~A~~~~~~~~~-----~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll 237 (519)
..+... ....+++++|.+.|+.... | ....|+.+...+...|++++|+..|++.... .|+ ...|..+.
T Consensus 295 ~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la 372 (615)
T TIGR00990 295 LQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRA 372 (615)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHH
Confidence 111111 1234689999999988764 2 3457888888999999999999999999876 344 55788888
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHHcCChHH
Q 048578 238 SACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEK---NVCTWNSIIGGLAIHGCGEE 314 (519)
Q Consensus 238 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~ 314 (519)
..+...|+++.|...++.+.+.. +.+..++..+..++...|++++|...|++..+. +...+..+...+.+.|++++
T Consensus 373 ~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~e 451 (615)
T TIGR00990 373 SMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIAS 451 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHH
Confidence 88999999999999999998875 566788999999999999999999999998653 45677788899999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCC-hh-------HHHHHHHHHHhcCChHHH
Q 048578 315 AVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPN-VK-------HYGCLVDLLCRARLLDEA 386 (519)
Q Consensus 315 a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~-------~~~~l~~~~~~~~~~~~A 386 (519)
|+..|++..+.. +.+...++.+..++...|++++|+..|+...+. .|+ .. .++..+..+...|++++|
T Consensus 452 A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA 527 (615)
T TIGR00990 452 SMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLINKALALFQWKQDFIEA 527 (615)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHHHHHHHHHHhhhHHHH
Confidence 999999988742 334668899999999999999999999998772 222 11 122222334457999999
Q ss_pred HHHHHhC-CCCCCH-HHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCC
Q 048578 387 YEVIRNM-PMEPNA-VLWGSLLTACASADDGANVELAEIAMERLIKLEPFN 435 (519)
Q Consensus 387 ~~~~~~~-~~~p~~-~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (519)
.+++++. .+.|+. ..+..+...+.. .|++++|.+.|+++.++.+..
T Consensus 528 ~~~~~kAl~l~p~~~~a~~~la~~~~~---~g~~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 528 ENLCEKALIIDPECDIAVATMAQLLLQ---QGDVDEALKLFERAAELARTE 575 (615)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHHhccH
Confidence 9999987 666754 468888888999 999999999999999987653
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-16 Score=166.07 Aligned_cols=393 Identities=13% Similarity=0.023 Sum_probs=280.4
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHHHHHhCCC-CCchhHHHHHHHHH
Q 048578 96 TFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKSKDF-NSVIHSLTRLITFY 174 (519)
Q Consensus 96 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~ 174 (519)
..--.-.+......|+.++|++++.+..... ..+...+..+...+...|+..++...+.+.-.. +.+......++..+
T Consensus 15 ~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l 93 (765)
T PRK10049 15 NNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTL 93 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3334455677888999999999999998621 234446888888888999977777777664334 44566778888999
Q ss_pred HhcCChHHHHHHHhcCCC--C-chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHH
Q 048578 175 CNFGDVKSAQLLFDQMTE--K-NVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKW 251 (519)
Q Consensus 175 ~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 251 (519)
...|++++|...+++..+ | +.. +..+..++...|+.++|+..++++.+... .+...+..+..++...+..+.|..
T Consensus 94 ~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 94 ADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHHHHH
Confidence 999999999999999865 3 455 88888999999999999999999998742 244555667777888899999998
Q ss_pred HHHHHHHcCCCcch------hHHHHHHHHHH-----hcCCH---HHHHHHHhhcCC---CChhh---H----HHHHHHHH
Q 048578 252 VHEFVNKNCIILND------KLGAALTDMYA-----KCGYI---EEALRVFKIVLE---KNVCT---W----NSIIGGLA 307 (519)
Q Consensus 252 ~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~g~~---~~a~~~~~~~~~---~~~~~---~----~~l~~~~~ 307 (519)
.++.+.. .|+. .....++..+. ..+++ ++|++.++.+.+ .++.. + ...+..+.
T Consensus 172 ~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll 248 (765)
T PRK10049 172 AIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALL 248 (765)
T ss_pred HHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHH
Confidence 8876554 1111 11222222222 22234 778888887763 22211 1 11134556
Q ss_pred HcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCC--ChhHHHHHHHHHHhcCChH
Q 048578 308 IHGCGEEAVKMFWQMQMSGIK-PDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEP--NVKHYGCLVDLLCRARLLD 384 (519)
Q Consensus 308 ~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~ 384 (519)
..|++++|+..|+++.+.+.. |+. ....+..+|...|++++|+..|+.+.+.....+ .......+..++...|+++
T Consensus 249 ~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 249 ARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred HhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence 779999999999999887532 433 223357789999999999999999876311111 1345666777889999999
Q ss_pred HHHHHHHhC-CCCC-------------CH---HHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 048578 385 EAYEVIRNM-PMEP-------------NA---VLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYA 447 (519)
Q Consensus 385 ~A~~~~~~~-~~~p-------------~~---~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 447 (519)
+|.++++.+ ...| +. ..+..+...+.. .|+.++|+..++++....|.++..+..++.++.
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~---~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~ 404 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKY---SNDLPQAEMRARELAYNAPGNQGLRIDYASVLQ 404 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999988 3333 32 234455666777 899999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCCChhHHHHHHHHHHH
Q 048578 448 AKAQWDDAGKMRRLMKERNIVKNPGCSVIEINDVVHEFMVGDGRHPCSEEIYSMLEYVAI 507 (519)
Q Consensus 448 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (519)
..|++++|++.+++..+..... +. .++ ..+......++.+++...++++..
T Consensus 405 ~~g~~~~A~~~l~~al~l~Pd~-~~-l~~-------~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 405 ARGWPRAAENELKKAEVLEPRN-IN-LEV-------EQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred hcCCHHHHHHHHHHHHhhCCCC-hH-HHH-------HHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999999999998865321 11 110 011122345577888888877753
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.9e-14 Score=147.01 Aligned_cols=418 Identities=9% Similarity=0.007 Sum_probs=298.5
Q ss_pred cCchHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCCCCCcchHHHH---HHHHHhcCChhHHHH
Q 048578 41 THLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIINPSTFAFNTV---IRGYAEAGLGHRGIQ 117 (519)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l---l~~~~~~g~~~~a~~ 117 (519)
++...+...++++.+......+.++ .++..+... |+.++|+..+++...|+...+..+ ...+...|++++|++
T Consensus 48 Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~---G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aie 123 (822)
T PRK14574 48 GDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWA---GRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALA 123 (822)
T ss_pred CCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHc---CCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 4555666777777655432222344 788888888 999999999999987755544443 346777899999999
Q ss_pred HHHHHHhCCCCCC-cchHHHHHHHHcCccchHHHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-
Q 048578 118 LYTQMIGNGLDPD-SFTYPILLKACGDLRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTE--K- 193 (519)
Q Consensus 118 ~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~- 193 (519)
+|+++.+.. |+ ...+..+...+...++.+++++.+.+.....|+...+..++..+...++..+|+..++++.+ |
T Consensus 124 ly~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~ 201 (822)
T PRK14574 124 LWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPT 201 (822)
T ss_pred HHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCC
Confidence 999999853 43 45566777788888999999999888776777766665555556556777679999999876 4
Q ss_pred chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHH------HHHHHHHH-----hccCCh---HHHHHHHHHHHHc
Q 048578 194 NVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELT------LVSVLSAC-----ANLGAS---ELGKWVHEFVNKN 259 (519)
Q Consensus 194 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~------~~~ll~~~-----~~~~~~---~~a~~~~~~~~~~ 259 (519)
+...+..+..++.+.|-...|.++..+-... +.+...- ....++.- ....++ +.|..-++.+...
T Consensus 202 n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~ 280 (822)
T PRK14574 202 SEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTR 280 (822)
T ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhh
Confidence 4567788888999999998988776654321 1221111 11111111 011223 3344444444432
Q ss_pred -CC-Ccchh----HHHHHHHHHHhcCCHHHHHHHHhhcCCCC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCC---
Q 048578 260 -CI-ILNDK----LGAALTDMYAKCGYIEEALRVFKIVLEKN----VCTWNSIIGGLAIHGCGEEAVKMFWQMQMSG--- 326 (519)
Q Consensus 260 -~~-~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g--- 326 (519)
+. |+... ..--.+-++...|++.++++.|+.+.... ..+-..+..+|...+++++|+.+++.+....
T Consensus 281 ~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~ 360 (822)
T PRK14574 281 WGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKT 360 (822)
T ss_pred ccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccc
Confidence 11 22211 22234557788899999999999997542 3455678899999999999999999986542
Q ss_pred --CCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCC----------CCC---hhHHHHHHHHHHhcCChHHHHHHHH
Q 048578 327 --IKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKV----------EPN---VKHYGCLVDLLCRARLLDEAYEVIR 391 (519)
Q Consensus 327 --~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----------~~~---~~~~~~l~~~~~~~~~~~~A~~~~~ 391 (519)
..++......|.-++..++++++|..+++++.+.... .|+ ...+..++..+...|++.+|.+.++
T Consensus 361 ~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le 440 (822)
T PRK14574 361 FRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLE 440 (822)
T ss_pred cCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1223344678889999999999999999999872110 122 1334456788889999999999999
Q ss_pred hC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 048578 392 NM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIV 468 (519)
Q Consensus 392 ~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 468 (519)
++ ...| |......+...+.. .|.+.+|++.++.+..++|++..+....+.++...|+|.+|..+.+.+.+...+
T Consensus 441 ~l~~~aP~n~~l~~~~A~v~~~---Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe 516 (822)
T PRK14574 441 DLSSTAPANQNLRIALASIYLA---RDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPE 516 (822)
T ss_pred HHHHhCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCC
Confidence 98 5556 66677788888888 999999999999999999999999999999999999999999998887665544
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-14 Score=151.08 Aligned_cols=439 Identities=10% Similarity=0.017 Sum_probs=263.9
Q ss_pred cCchHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCCC--CCcchHHHHHHHHHhcCChhHHHHH
Q 048578 41 THLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIIN--PSTFAFNTVIRGYAEAGLGHRGIQL 118 (519)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~a~~~ 118 (519)
++...+...++...+.. |.++.++..|...|... |++++|+..+++..+ |+-..|..++..+ +++++|..+
T Consensus 58 Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~---g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ 130 (987)
T PRK09782 58 NDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHF---GHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTT 130 (987)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHH
Confidence 45555567777777665 33477888999999999 999999999999865 4334444444333 888899999
Q ss_pred HHHHHhCCCCCCcc-hHHHHHHH--------HcCccchHHHHHHHHHhCCCCCchhHHHHH-HHHHHhcCChHHHHHHHh
Q 048578 119 YTQMIGNGLDPDSF-TYPILLKA--------CGDLRQVKGVHSLVVKSKDFNSVIHSLTRL-ITFYCNFGDVKSAQLLFD 188 (519)
Q Consensus 119 ~~~m~~~g~~p~~~-~~~~ll~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~ 188 (519)
++++.+. .|+.. .+..+... |.+.+.+..+++ ..... ..|...+.... ..+|.+.|++++|+..+.
T Consensus 131 ye~l~~~--~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~-~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~ 206 (987)
T PRK09782 131 VEELLAQ--QKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFA-ASPEGKTLRTDLLQRAIYLKQWSQADTLYN 206 (987)
T ss_pred HHHHHHh--CCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhC-CCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 9999884 34433 33333333 455555555555 22221 22233333333 666777777777666666
Q ss_pred cCCC----------------------------------CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CCHHHH
Q 048578 189 QMTE----------------------------------KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVE-VNELTL 233 (519)
Q Consensus 189 ~~~~----------------------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~ 233 (519)
++.+ .++..+..+...|.+.|+.++|.++++++...-.. |+..++
T Consensus 207 ~L~k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~ 286 (987)
T PRK09782 207 EARQQNTLSAAERRQWFDVLLAGQLDDRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSW 286 (987)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHH
Confidence 5542 34445567778888888888998888887543111 211111
Q ss_pred HHH------------------------------HHHHhccC---------------------------------------
Q 048578 234 VSV------------------------------LSACANLG--------------------------------------- 244 (519)
Q Consensus 234 ~~l------------------------------l~~~~~~~--------------------------------------- 244 (519)
..+ +..+.+.+
T Consensus 287 ~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 366 (987)
T PRK09782 287 LYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLAR 366 (987)
T ss_pred HHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHH
Confidence 111 11112222
Q ss_pred ------------------------ChHHHHHHHHHHHHc-C-CCcchhHHHHHHHHHHhc--------------------
Q 048578 245 ------------------------ASELGKWVHEFVNKN-C-IILNDKLGAALTDMYAKC-------------------- 278 (519)
Q Consensus 245 ------------------------~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~-------------------- 278 (519)
+.++|..+++..... + ...+.....-++..|.+.
T Consensus 367 ~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 446 (987)
T PRK09782 367 LLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAE 446 (987)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccch
Confidence 222222222222110 0 001111222223333322
Q ss_pred -------------------------------------------CCHHHHHHHHhhcCCCChhhHHHH--HHHHHHcCChH
Q 048578 279 -------------------------------------------GYIEEALRVFKIVLEKNVCTWNSI--IGGLAIHGCGE 313 (519)
Q Consensus 279 -------------------------------------------g~~~~a~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~ 313 (519)
++.++|...+.+.....+..+..+ ...+...|+++
T Consensus 447 ~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~e 526 (987)
T PRK09782 447 QRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYA 526 (987)
T ss_pred hHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHH
Confidence 333344443333322111122222 23334677788
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 048578 314 EAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM 393 (519)
Q Consensus 314 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 393 (519)
+|...|+++... .|+...+..+..++.+.|+.++|...++...+. .++....+..+...+.+.|++++|...+++.
T Consensus 527 eAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~A 602 (987)
T PRK09782 527 TALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQRYIPGQPELALNDLTRS 602 (987)
T ss_pred HHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 888777776543 444455566667777888888888888887762 2233333333444445569999999999888
Q ss_pred -CCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCc
Q 048578 394 -PMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPG 472 (519)
Q Consensus 394 -~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 472 (519)
.+.|+...+..+...+.+ .|++++|...++++++.+|+++..+..++.++...|++++|+..+++..+..... +.
T Consensus 603 L~l~P~~~a~~~LA~~l~~---lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~-~~ 678 (987)
T PRK09782 603 LNIAPSANAYVARATIYRQ---RHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDD-PA 678 (987)
T ss_pred HHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HH
Confidence 778888888888888999 9999999999999999999999999999999999999999999999998754432 11
Q ss_pred ccEEEECCEEEEEEeCCCCCCChhHHHHHHHHHH
Q 048578 473 CSVIEINDVVHEFMVGDGRHPCSEEIYSMLEYVA 506 (519)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (519)
.+. .+.......++.+++...+++..
T Consensus 679 -a~~-------nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 679 -LIR-------QLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred -HHH-------HHHHHHHHCCCHHHHHHHHHHHH
Confidence 110 11122234556666666666553
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.6e-14 Score=125.09 Aligned_cols=394 Identities=13% Similarity=0.104 Sum_probs=205.6
Q ss_pred hccCchHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhc--------------------------CCCChHHHHHHHhcCC
Q 048578 39 KCTHLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLV--------------------------NSSQIAYAHLVFNQII 92 (519)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--------------------------~~~~~~~A~~~~~~~~ 92 (519)
+.....|..-+++.|...|.+.++..-..|+...+-.- ++|.+.+ ++-+..
T Consensus 127 S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAd---L~~E~~ 203 (625)
T KOG4422|consen 127 SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVAD---LLFETL 203 (625)
T ss_pred hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHH---HHHhhc
Confidence 34677888899999999999988888777776543321 1122222 233333
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHHHHHhCCCCCchhHHHHHHH
Q 048578 93 NPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKSKDFNSVIHSLTRLIT 172 (519)
Q Consensus 93 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 172 (519)
+.+..+|..||.++++--..+.|.++|++..+...+.+..+||.+|.+-+-..+ +++...|.... +.||..++|+++.
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~-K~Lv~EMisqk-m~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG-KKLVAEMISQK-MTPNLFTFNALLS 281 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc-HHHHHHHHHhh-cCCchHhHHHHHH
Confidence 456678888888888888888888888888887777888888888776543333 44555555555 5666666666666
Q ss_pred HHHhcCChHHHHHHHhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHH-HH
Q 048578 173 FYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELG-KW 251 (519)
Q Consensus 173 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a-~~ 251 (519)
+..+.|+++.|... |.+++.+|++-|+.|...+|..+|..+++.++..+. ..
T Consensus 282 c~akfg~F~~ar~a---------------------------alqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~ 334 (625)
T KOG4422|consen 282 CAAKFGKFEDARKA---------------------------ALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASS 334 (625)
T ss_pred HHHHhcchHHHHHH---------------------------HHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHH
Confidence 66666655544332 234444555555555555555555555444444322 12
Q ss_pred HHHHHHHc--C------CCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--------CC---hhhHHHHHHHHHHcCCh
Q 048578 252 VHEFVNKN--C------IILNDKLGAALTDMYAKCGYIEEALRVFKIVLE--------KN---VCTWNSIIGGLAIHGCG 312 (519)
Q Consensus 252 ~~~~~~~~--~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~---~~~~~~l~~~~~~~g~~ 312 (519)
+...+... | .+.+...|...+..|....+.+-|..+-.-... ++ ..-|..+....++....
T Consensus 335 ~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~ 414 (625)
T KOG4422|consen 335 WINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESI 414 (625)
T ss_pred HHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 22222110 0 112233344444444444444444444332211 11 11234455555555556
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcC-----------
Q 048578 313 EEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRAR----------- 381 (519)
Q Consensus 313 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------- 381 (519)
+.....|+.|.-.-+-|+..+...++++....|.++-.-++|..+.. +|..-....-..+...+++.+
T Consensus 415 ~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~-~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql 493 (625)
T KOG4422|consen 415 DVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKE-YGHTFRSDLREEILMLLARDKLHPLTPEREQL 493 (625)
T ss_pred HHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHH-hhhhhhHHHHHHHHHHHhcCCCCCCChHHHHH
Confidence 66666666665555556666666666666666666666666555555 333222222222222222211
Q ss_pred ---------ChHHHHH-HHHhC-CCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhC---CCCCc--hHHHHHHH
Q 048578 382 ---------LLDEAYE-VIRNM-PMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLE---PFNDG--NYVLMSNI 445 (519)
Q Consensus 382 ---------~~~~A~~-~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~---p~~~~--~~~~l~~~ 445 (519)
++.++.+ .-.++ ...-.....+...-.+.+ .|..++|.+++....+.+ |..+. +...+.+.
T Consensus 494 ~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R---~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~ 570 (625)
T KOG4422|consen 494 QVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLR---AGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDS 570 (625)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHH---cchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHH
Confidence 1111111 01111 112233344444445556 666666666666664433 33222 22234444
Q ss_pred HHhcCCchHHHHHHHHHHhCCCc
Q 048578 446 YAAKAQWDDAGKMRRLMKERNIV 468 (519)
Q Consensus 446 ~~~~g~~~~A~~~~~~m~~~~~~ 468 (519)
-.+.+..-.|..+++-|...+..
T Consensus 571 a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 571 AKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred HHhcCCHHHHHHHHHHHHHcCch
Confidence 44555666666666666665554
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.3e-13 Score=136.52 Aligned_cols=378 Identities=14% Similarity=0.072 Sum_probs=271.3
Q ss_pred CChHHHHHHHhcCCC--CCc--chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHH-H--HHHHcCccchHHHH
Q 048578 79 SQIAYAHLVFNQIIN--PST--FAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPI-L--LKACGDLRQVKGVH 151 (519)
Q Consensus 79 ~~~~~A~~~~~~~~~--~~~--~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~-l--l~~~~~~~~~~~~~ 151 (519)
|+++.|+..|+++.+ |+. ..+ .++..+...|+.++|+..+++.. .|+...+.. + ...+...|+..++.
T Consensus 48 Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 48 GDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred CCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999965 443 234 88888889999999999999998 354443333 3 34666778866666
Q ss_pred HHHHHhCCCCC-chhHHHHHHHHHHhcCChHHHHHHHhcCCC--CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC
Q 048578 152 SLVVKSKDFNS-VIHSLTRLITFYCNFGDVKSAQLLFDQMTE--KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEV 228 (519)
Q Consensus 152 ~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 228 (519)
+.+.+.-...| +...+..++..+...++.++|+..++++.. |+...+..++..+...++..+|++.++++.+.. +-
T Consensus 123 ely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~ 201 (822)
T PRK14574 123 ALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PT 201 (822)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CC
Confidence 66665443444 466777888899999999999999999987 444444444444444666666999999999874 33
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhH-----HHHHHHHH---H--hcCC---HHHHHHHHhhcCC--
Q 048578 229 NELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKL-----GAALTDMY---A--KCGY---IEEALRVFKIVLE-- 293 (519)
Q Consensus 229 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~l~~~~---~--~~g~---~~~a~~~~~~~~~-- 293 (519)
+...+..+..+..+.|-...|.++..+-...-.+.+..- ...+++.- . ...+ .+.|+.-++.+..
T Consensus 202 n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~ 281 (822)
T PRK14574 202 SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRW 281 (822)
T ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhc
Confidence 566778888889999988888877665332111111000 00111000 0 1112 3445555555433
Q ss_pred -CCh---h----hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcC---
Q 048578 294 -KNV---C----TWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYK--- 362 (519)
Q Consensus 294 -~~~---~----~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--- 362 (519)
+++ . +.--.+-++...|++.++++.|+.+...|.+....+-..+..+|...+++++|..+++.+....+
T Consensus 282 ~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~ 361 (822)
T PRK14574 282 GKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTF 361 (822)
T ss_pred cCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccccc
Confidence 212 1 12234667888999999999999999988665566888999999999999999999999976321
Q ss_pred -CCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-------------C--CHH-HHHHHHHHHccccCCCCHHHHHHH
Q 048578 363 -VEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PME-------------P--NAV-LWGSLLTACASADDGANVELAEIA 424 (519)
Q Consensus 363 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~-------------p--~~~-~~~~ll~~~~~~~~~~~~~~a~~~ 424 (519)
.+++......|.-+|...+++++|..+++++ ... | |-. ....++..+.. .|+..+|++.
T Consensus 362 ~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~---~gdl~~Ae~~ 438 (822)
T PRK14574 362 RNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVA---LNDLPTAQKK 438 (822)
T ss_pred CCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHH---cCCHHHHHHH
Confidence 2334444578899999999999999999988 211 2 222 33444555777 8999999999
Q ss_pred HHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048578 425 MERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKER 465 (519)
Q Consensus 425 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 465 (519)
++++....|.|+.....++.++...|...+|++.++.....
T Consensus 439 le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 439 LEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999777665
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=7e-13 Score=130.26 Aligned_cols=480 Identities=12% Similarity=0.045 Sum_probs=330.3
Q ss_pred hhhhhhhhhccccCCCCCCCCCcccHH-HHHHhccCchHHHHHHHHHHHhcCCCCchhHHHHHHHH---HhhcCCCChHH
Q 048578 8 NSQLTHFTNSANSHKNSNTATKSHHHL-PLLQKCTHLVQFKQVHAQIIKASFDNRTISDTQLAKLI---ESLVNSSQIAY 83 (519)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~---~~~~~~~~~~~ 83 (519)
.+++..|+.+++ .++..+||+..-. ..+--|.....+...|++..+. .| ...++++... ...-....+..
T Consensus 181 ~~al~yyk~al~--inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqL--dp--~~v~alv~L~~~~l~~~d~~s~~~ 254 (1018)
T KOG2002|consen 181 RGALKYYKKALR--INPACKADVRIGIGHCFWKLGMSEKALLAFERALQL--DP--TCVSALVALGEVDLNFNDSDSYKK 254 (1018)
T ss_pred HHHHHHHHHHHh--cCcccCCCccchhhhHHHhccchhhHHHHHHHHHhc--Ch--hhHHHHHHHHHHHHHccchHHHHH
Confidence 355667777665 3345556653322 1223345556666666666544 33 4444443322 12222345666
Q ss_pred HHHHHhcC---CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CCcchHHHHHHHHcCccchHHHHHHHHHhC
Q 048578 84 AHLVFNQI---INPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLD--PDSFTYPILLKACGDLRQVKGVHSLVVKSK 158 (519)
Q Consensus 84 A~~~~~~~---~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~ 158 (519)
+..++... ...|+...+.|...|.-.|+++.+..+...+...... .-..+|-.+-+++...|+.++++..+.+..
T Consensus 255 ~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~ 334 (1018)
T KOG2002|consen 255 GVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESL 334 (1018)
T ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 77766665 3367888999999999999999999999998875311 123357788889999999999998887766
Q ss_pred CCCCchhH--HHHHHHHHHhcCChHHHHHHHhcCCC--C-chhHHHHHHHHHHHcC----ChhHHHHHHHHHHhCCCCCC
Q 048578 159 DFNSVIHS--LTRLITFYCNFGDVKSAQLLFDQMTE--K-NVVTWTAMINGHVKQK----NYREGIDLFRKMRDSGVEVN 229 (519)
Q Consensus 159 ~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~----~~~~a~~~~~~m~~~~~~~~ 229 (519)
...++..+ +.-+...|.+.|+++.+...|+.+.. | +..+...|...|...+ ..++|..++.+....- +.|
T Consensus 335 k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d 413 (1018)
T KOG2002|consen 335 KADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVD 413 (1018)
T ss_pred ccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-ccc
Confidence 56666544 44567889999999999999998865 3 4456666777777664 4567777777766553 446
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHH----HHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC-------Ch--
Q 048578 230 ELTLVSVLSACANLGASELGKWVHEFV----NKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEK-------NV-- 296 (519)
Q Consensus 230 ~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~-- 296 (519)
...|..+...+....-+ .....+..+ ...+.++.+...|.+...+...|++..|...|...... +.
T Consensus 414 ~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~ 492 (1018)
T KOG2002|consen 414 SEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGK 492 (1018)
T ss_pred HHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccc
Confidence 66777666666554433 335555544 45566788999999999999999999999999876332 22
Q ss_pred ----hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHH
Q 048578 297 ----CTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDV-TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYG 371 (519)
Q Consensus 297 ----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 371 (519)
.+-..+....-..++++.|.+.|..+.+. .|+-. .|.-++......+...+|...+..... ....++..++
T Consensus 493 ~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~--~d~~np~ars 568 (1018)
T KOG2002|consen 493 STNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALN--IDSSNPNARS 568 (1018)
T ss_pred cchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh--cccCCcHHHH
Confidence 12334556666778999999999999875 56544 555555444556788999999999988 4556666777
Q ss_pred HHHHHHHhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHcccc---------CCCCHHHHHHHHHHHHhhCCCCCch
Q 048578 372 CLVDLLCRARLLDEAYEVIRNM----PMEPNAVLWGSLLTACASAD---------DGANVELAEIAMERLIKLEPFNDGN 438 (519)
Q Consensus 372 ~l~~~~~~~~~~~~A~~~~~~~----~~~p~~~~~~~ll~~~~~~~---------~~~~~~~a~~~~~~~~~~~p~~~~~ 438 (519)
.+...+.+...+.-|.+-|..+ ...+|..+..+|.+.|...- ..+..++|.+.|.++++.+|.|..+
T Consensus 569 l~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yA 648 (1018)
T KOG2002|consen 569 LLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYA 648 (1018)
T ss_pred HHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhh
Confidence 7888999998888888855554 33467777777776554311 2345788999999999999999999
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCCChhHHHHHHHHHHHH
Q 048578 439 YVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPGCSVIEINDVVHEFMVGDGRHPCSEEIYSMLEYVAIS 508 (519)
Q Consensus 439 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (519)
-+-++-+++..|++.+|..+|.++++......+. |+-+. -.+...+++..+.++.+....+
T Consensus 649 ANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv--~lNla-------h~~~e~~qy~~AIqmYe~~lkk 709 (1018)
T KOG2002|consen 649 ANGIGIVLAEKGRFSEARDIFSQVREATSDFEDV--WLNLA-------HCYVEQGQYRLAIQMYENCLKK 709 (1018)
T ss_pred ccchhhhhhhccCchHHHHHHHHHHHHHhhCCce--eeeHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999876632111 32222 1223466777777777776433
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.65 E-value=4e-16 Score=143.14 Aligned_cols=256 Identities=16% Similarity=0.097 Sum_probs=109.1
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcC
Q 048578 201 MINGHVKQKNYREGIDLFRKMRDSGVEVNEL-TLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCG 279 (519)
Q Consensus 201 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 279 (519)
+...+.+.|++++|++++++......+|+.. .|..+...+...++++.|...++.+...+ +.++..+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-cccc
Confidence 3555666677777777765443332123333 33333444555667777777777776654 2355556666666 5777
Q ss_pred CHHHHHHHHhhcCC--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 048578 280 YIEEALRVFKIVLE--KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSG-IKPDDVTLIAVLTACSHAGLIEKGKEIFYN 356 (519)
Q Consensus 280 ~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 356 (519)
++++|.+++....+ ++...+..++..+...++++++..+++.+.... ..++...|..+...+.+.|+.++|...+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 78888777766533 355667777888888899999999999876533 345666888888899999999999999999
Q ss_pred cHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC
Q 048578 357 MRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM--PMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPF 434 (519)
Q Consensus 357 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (519)
..+. .|.+......++..+...|+.+++.++++.. ....|...+..+..++.. .|+.++|...++++.+.+|+
T Consensus 172 al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~---lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 172 ALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQ---LGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHH---HT-HHHHHHHHHHHHHHSTT
T ss_pred HHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcc---cccccccccccccccccccc
Confidence 9883 3345777888999999999999988887776 223345567788888888 89999999999999999999
Q ss_pred CCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 048578 435 NDGNYVLMSNIYAAKAQWDDAGKMRRLMK 463 (519)
Q Consensus 435 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (519)
|+.....++.++...|+.++|.++.++.-
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 99999999999999999999999987753
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-12 Score=118.15 Aligned_cols=367 Identities=14% Similarity=0.088 Sum_probs=252.4
Q ss_pred CCChHHHHHHHhcCCC--CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcch--------HHHHHHH-------
Q 048578 78 SSQIAYAHLVFNQIIN--PSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFT--------YPILLKA------- 140 (519)
Q Consensus 78 ~~~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~--------~~~ll~~------- 140 (519)
.|++++|+..|+.+.+ |+..+--.|+-++..-|+.++..+.|.+|......||..- -..++..
T Consensus 289 ~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~l 368 (840)
T KOG2003|consen 289 AGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHL 368 (840)
T ss_pred cccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHH
Confidence 3888888888887743 6654433344445557888888888888877543333221 1122221
Q ss_pred --HcCccc--hHHHHHHHHHhC--CCCCchh-------------HH--------HHHHHHHHhcCChHHHHHHHhcCCCC
Q 048578 141 --CGDLRQ--VKGVHSLVVKSK--DFNSVIH-------------SL--------TRLITFYCNFGDVKSAQLLFDQMTEK 193 (519)
Q Consensus 141 --~~~~~~--~~~~~~~~~~~~--~~~~~~~-------------~~--------~~l~~~~~~~g~~~~A~~~~~~~~~~ 193 (519)
..+.+. +++..-...+.. -+.|+-. .+ -.-..-|.+.|+++.|.+++..+.+.
T Consensus 369 k~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~k 448 (840)
T KOG2003|consen 369 KNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKK 448 (840)
T ss_pred HHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhc
Confidence 111111 222211111110 0111100 00 01123367789999999988888765
Q ss_pred chhHH----HHHH-HHHHH-cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhH
Q 048578 194 NVVTW----TAMI-NGHVK-QKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKL 267 (519)
Q Consensus 194 ~~~~~----~~li-~~~~~-~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 267 (519)
|..+- |.|. --|.+ ..++..|.++-+...... +-+......-.+.....|++++|...+.+.+..+-......
T Consensus 449 dnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~eal 527 (840)
T KOG2003|consen 449 DNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEAL 527 (840)
T ss_pred cchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHH
Confidence 43322 2222 22333 345777777766655432 22333333334445567899999999999998775555555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhc---CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 048578 268 GAALTDMYAKCGYIEEALRVFKIV---LEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHA 344 (519)
Q Consensus 268 ~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 344 (519)
|| +...+-..|++++|+++|-++ ...+......+...|-...+..+|++++.+.... ++.|......|...|-+.
T Consensus 528 fn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqe 605 (840)
T KOG2003|consen 528 FN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQE 605 (840)
T ss_pred HH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcc
Confidence 55 445577889999999999776 4467888888899999999999999999776542 344566888999999999
Q ss_pred CcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHccccCCCCHHHHHH
Q 048578 345 GLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPNAVLWGSLLTACASADDGANVELAEI 423 (519)
Q Consensus 345 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~ 423 (519)
|+-..|.+.+-.--+ =++.+..+...|..-|....-+++|+..|++. -++|+..-|..++..|.+. .|++++|..
T Consensus 606 gdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rr--sgnyqka~d 681 (840)
T KOG2003|consen 606 GDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRR--SGNYQKAFD 681 (840)
T ss_pred cchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHh--cccHHHHHH
Confidence 999999988766544 46778889888999999999999999999999 7899999999999987763 899999999
Q ss_pred HHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 048578 424 AMERLIKLEPFNDGNYVLMSNIYAAKAQ 451 (519)
Q Consensus 424 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 451 (519)
+++...+.-|.+..++..|.+++...|.
T Consensus 682 ~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 682 LYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHhCccchHHHHHHHHHhccccc
Confidence 9999999999999999999999887774
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.1e-13 Score=124.00 Aligned_cols=354 Identities=16% Similarity=0.131 Sum_probs=244.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-cchHHHHHHHHcCccchHHHHHHHHHhCCCCCc-hhHHHHHHHHHHhc
Q 048578 100 NTVIRGYAEAGLGHRGIQLYTQMIGNGLDPD-SFTYPILLKACGDLRQVKGVHSLVVKSKDFNSV-IHSLTRLITFYCNF 177 (519)
Q Consensus 100 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 177 (519)
-....-|.++|++++|++.|.+.++ +.|| +.-|...-.+|...|+++++.+.-.+.-++.|+ +..+..-.+++-..
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQL 196 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhh
Confidence 3445566778888888888888887 5677 556666777777788877777777666556665 44555555666666
Q ss_pred CChHHHHHHH------hcC-------------------------CC------CchhHHHHHHHHHH--------------
Q 048578 178 GDVKSAQLLF------DQM-------------------------TE------KNVVTWTAMINGHV-------------- 206 (519)
Q Consensus 178 g~~~~A~~~~------~~~-------------------------~~------~~~~~~~~li~~~~-------------- 206 (519)
|++++|+.=+ +.. .+ |+....++....+.
T Consensus 197 g~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ks 276 (606)
T KOG0547|consen 197 GKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKS 276 (606)
T ss_pred ccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccc
Confidence 6666654211 110 00 22222222211111
Q ss_pred -----------HcC---ChhHHHHHHHHHHhC-CCCC-----CHH----HHHHHH--HHHhccCChHHHHHHHHHHHHcC
Q 048578 207 -----------KQK---NYREGIDLFRKMRDS-GVEV-----NEL----TLVSVL--SACANLGASELGKWVHEFVNKNC 260 (519)
Q Consensus 207 -----------~~~---~~~~a~~~~~~m~~~-~~~~-----~~~----~~~~ll--~~~~~~~~~~~a~~~~~~~~~~~ 260 (519)
..+ .+.+|...+.+--.. -..+ |.. .-..++ ..+.-.|+.-.+..-|+...+..
T Consensus 277 Da~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~ 356 (606)
T KOG0547|consen 277 DAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLD 356 (606)
T ss_pred hhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcC
Confidence 001 122222222111000 0011 111 111112 22445678888999999988876
Q ss_pred CCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHH
Q 048578 261 IILNDKLGAALTDMYAKCGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPD-DVTLIA 336 (519)
Q Consensus 261 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ 336 (519)
.. +...|--+..+|....+.++....|++... .|+.+|..-.+...-.+++++|..=|++.+.. .|+ ...|..
T Consensus 357 ~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~pe~~~~~iQ 433 (606)
T KOG0547|consen 357 PA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--DPENAYAYIQ 433 (606)
T ss_pred cc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--ChhhhHHHHH
Confidence 33 334477777889999999999999988754 47788999888888899999999999999874 454 457888
Q ss_pred HHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---------HHHHHHHH
Q 048578 337 VLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPN---------AVLWGSLL 406 (519)
Q Consensus 337 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~---------~~~~~~ll 406 (519)
+.-+..+.+.+++++..|++..+ .++..+..|+.....+...++++.|.+.|+.. .+.|. ..+...++
T Consensus 434 l~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l 511 (606)
T KOG0547|consen 434 LCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALL 511 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHh
Confidence 88888899999999999999998 56777889999999999999999999999987 44444 22222232
Q ss_pred HHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048578 407 TACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 407 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
. +.- .+++..|..++.++++++|....+|..|+..-.+.|+.++|+++|++-..
T Consensus 512 ~-~qw---k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 512 V-LQW---KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred h-hch---hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2 234 68999999999999999999999999999999999999999999998653
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.2e-12 Score=126.82 Aligned_cols=399 Identities=15% Similarity=0.106 Sum_probs=237.1
Q ss_pred CCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCCCCC------cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcc
Q 048578 59 DNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIINPS------TFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSF 132 (519)
Q Consensus 59 ~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 132 (519)
+.+|.+.+.|.+.|.-. |+++.+..+.+.+...+ ..+|-.+.++|-..|++++|...|.+..+. .+|.+
T Consensus 267 ~~nP~~l~~LAn~fyfK---~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~ 341 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFK---KDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNF 341 (1018)
T ss_pred CCCcHHHHHHHHHHhhc---ccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCc
Confidence 44677777777777666 78888777777664322 234666777777788888888877666653 34443
Q ss_pred hHH--HHHHHHcCccchHHHHHHHHHhCC-CCCchhHHHHHHHHHHhcC----ChHHHHHHHhcCCC---CchhHHHHHH
Q 048578 133 TYP--ILLKACGDLRQVKGVHSLVVKSKD-FNSVIHSLTRLITFYCNFG----DVKSAQLLFDQMTE---KNVVTWTAMI 202 (519)
Q Consensus 133 ~~~--~ll~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~---~~~~~~~~li 202 (519)
++. -+...+.+.|+.+.....+.+.-. .+.+..+...|...|...+ ..+.|..++..... .|...|-.+.
T Consensus 342 ~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~la 421 (1018)
T KOG2002|consen 342 VLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELA 421 (1018)
T ss_pred cccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 332 234445555553322222222111 2333444455555555443 34445555544433 2344454444
Q ss_pred HHHHHcCChhHHHHHHHHH----HhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc---CCC------cchhHHH
Q 048578 203 NGHVKQKNYREGIDLFRKM----RDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKN---CII------LNDKLGA 269 (519)
Q Consensus 203 ~~~~~~~~~~~a~~~~~~m----~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~------~~~~~~~ 269 (519)
..+-+..-+.. +.+|... ...+-.+.....+.+...+...|+++.|...|...... ... ++..+-.
T Consensus 422 ql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~Y 500 (1018)
T KOG2002|consen 422 QLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKY 500 (1018)
T ss_pred HHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHH
Confidence 44443333222 4433322 22333344555555555555555555555555554443 001 1111122
Q ss_pred HHHHHHHhcC----------------------------------CHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCCh
Q 048578 270 ALTDMYAKCG----------------------------------YIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCG 312 (519)
Q Consensus 270 ~l~~~~~~~g----------------------------------~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~ 312 (519)
.+..++-..+ ...+|..++..+.. .++..+..+...+.+...+
T Consensus 501 Nlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~ 580 (1018)
T KOG2002|consen 501 NLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEW 580 (1018)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhh
Confidence 2333333333 44445555544432 3455666666666666666
Q ss_pred HHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhcc------------CcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHh
Q 048578 313 EEAVKMFWQMQMS-GIKPDDVTLIAVLTACSHA------------GLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCR 379 (519)
Q Consensus 313 ~~a~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (519)
..|.+-|...... ...+|..+...|.+.|.+. +..++|+++|.++.+ ..+.|...-|-+.-.++.
T Consensus 581 ~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~ 658 (1018)
T KOG2002|consen 581 KPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAE 658 (1018)
T ss_pred cccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhh
Confidence 6666655554332 1235666666666655432 457788888888887 456677777888888999
Q ss_pred cCChHHHHHHHHhC--CCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhC--CCCCchHHHHHHHHHhcCCchHH
Q 048578 380 ARLLDEAYEVIRNM--PMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLE--PFNDGNYVLMSNIYAAKAQWDDA 455 (519)
Q Consensus 380 ~~~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A 455 (519)
.|++.+|..+|.+. ...-...+|..+...|.. .|++-.|++.|+...+.. .+++.....|++++.+.|++.+|
T Consensus 659 kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e---~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~ea 735 (1018)
T KOG2002|consen 659 KGRFSEARDIFSQVREATSDFEDVWLNLAHCYVE---QGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEA 735 (1018)
T ss_pred ccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHH---HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHH
Confidence 99999999999988 223345678888889999 899999999999988754 44678889999999999999999
Q ss_pred HHHHHHHHhCCCc
Q 048578 456 GKMRRLMKERNIV 468 (519)
Q Consensus 456 ~~~~~~m~~~~~~ 468 (519)
.+.+.......+.
T Consensus 736 k~~ll~a~~~~p~ 748 (1018)
T KOG2002|consen 736 KEALLKARHLAPS 748 (1018)
T ss_pred HHHHHHHHHhCCc
Confidence 9998887765554
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.3e-13 Score=129.24 Aligned_cols=316 Identities=14% Similarity=0.073 Sum_probs=223.6
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHH
Q 048578 108 EAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLF 187 (519)
Q Consensus 108 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 187 (519)
-.|+.++|.+++.+.++. .+.....|.+|..+|-..|+.+++...+
T Consensus 151 arg~~eeA~~i~~EvIkq----------------------------------dp~~~~ay~tL~~IyEqrGd~eK~l~~~ 196 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQ----------------------------------DPRNPIAYYTLGEIYEQRGDIEKALNFW 196 (895)
T ss_pred HhCCHHHHHHHHHHHHHh----------------------------------CccchhhHHHHHHHHHHcccHHHHHHHH
Confidence 347888888888777763 2445666777777777777777777665
Q ss_pred hcCC---CCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcc
Q 048578 188 DQMT---EKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILN 264 (519)
Q Consensus 188 ~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 264 (519)
-... ..|...|-.+.....+.|.+++|.-+|.+..+.. +++...+-.-...|-+.|+...|..-|.++.....+.+
T Consensus 197 llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d 275 (895)
T KOG2076|consen 197 LLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVD 275 (895)
T ss_pred HHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchh
Confidence 4432 2455677777777777788888888887777764 33444444555667777887777777777777653333
Q ss_pred hhH----HHHHHHHHHhcCCHHHHHHHHhhcCCC-----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC---------
Q 048578 265 DKL----GAALTDMYAKCGYIEEALRVFKIVLEK-----NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSG--------- 326 (519)
Q Consensus 265 ~~~----~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g--------- 326 (519)
..- ....+..+...++.+.|.+.++..... +...++.++..+.+...++.+.....++....
T Consensus 276 ~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~ 355 (895)
T KOG2076|consen 276 IERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWD 355 (895)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhh
Confidence 222 233455566667777777777766441 44567778888888888888887777766521
Q ss_pred ------------------CCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcC--CCCChhHHHHHHHHHHhcCChHHH
Q 048578 327 ------------------IKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYK--VEPNVKHYGCLVDLLCRARLLDEA 386 (519)
Q Consensus 327 ------------------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A 386 (519)
+.++...+ -++-++.+.+..+....+...+.+ .. ..-+...|.-+.++|...|++.+|
T Consensus 356 ~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~-~n~~~~d~~dL~~d~a~al~~~~~~~~A 433 (895)
T KOG2076|consen 356 TDERRREEPNALCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVE-DNVWVSDDVDLYLDLADALTNIGKYKEA 433 (895)
T ss_pred hhhhccccccccccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHH-hcCChhhhHHHHHHHHHHHHhcccHHHH
Confidence 22232231 222244444444444445555554 34 334567888999999999999999
Q ss_pred HHHHHhC-CCCC--CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 048578 387 YEVIRNM-PMEP--NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMK 463 (519)
Q Consensus 387 ~~~~~~~-~~~p--~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (519)
+.+|..+ ...+ +...|..+...|.. .|.+++|.+.|++++...|++..+...|+.++.+.|+.|+|.+.++.+.
T Consensus 434 l~~l~~i~~~~~~~~~~vw~~~a~c~~~---l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 434 LRLLSPITNREGYQNAFVWYKLARCYME---LGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHhcCccccchhhhHHHHHHHHH---HhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9999999 2222 56688889888999 9999999999999999999999999999999999999999999999886
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=9e-13 Score=126.57 Aligned_cols=145 Identities=15% Similarity=0.029 Sum_probs=98.9
Q ss_pred cCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 048578 278 CGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIF 354 (519)
Q Consensus 278 ~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 354 (519)
..+.+...++++.+.+ .++.....+...+...|+.++|.+++++..+. .|+.... ++.+....++.+++.+..
T Consensus 242 ~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~ 317 (398)
T PRK10747 242 DQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVL 317 (398)
T ss_pred hcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHH
Confidence 3344455555555433 35666777777777888888888888777663 4444222 233334557788888888
Q ss_pred HHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhh
Q 048578 355 YNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKL 431 (519)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~ 431 (519)
+...+ ..+-|...+..+...+.+.+++++|.+.|+.. ...|+..++..+...+.. .|+.++|.+++++...+
T Consensus 318 e~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~---~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 318 RQQIK--QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDR---LHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhh
Confidence 77776 34455566777788888888888888888877 667888777777777777 77888888888877654
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.2e-12 Score=111.95 Aligned_cols=363 Identities=12% Similarity=0.076 Sum_probs=238.6
Q ss_pred CCcccHHHHHHhccCchHHH---HHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcC----CCCCcchHH
Q 048578 28 TKSHHHLPLLQKCTHLVQFK---QVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQI----INPSTFAFN 100 (519)
Q Consensus 28 p~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~ 100 (519)
-+..|+.+++...++..+.+ +++++-.....+.+..++|.++.+-+-. .. .+++.+| ..||..|+|
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~---~~----K~Lv~EMisqkm~Pnl~TfN 277 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS---VG----KKLVAEMISQKMTPNLFTFN 277 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh---cc----HHHHHHHHHhhcCCchHhHH
Confidence 36778899998887776664 4555555555677888899988765544 22 4455555 459999999
Q ss_pred HHHHHHHhcCChh----HHHHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHH-----HHHHhC--CC---CC-chh
Q 048578 101 TVIRGYAEAGLGH----RGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHS-----LVVKSK--DF---NS-VIH 165 (519)
Q Consensus 101 ~ll~~~~~~g~~~----~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~-----~~~~~~--~~---~~-~~~ 165 (519)
+++++.++.|+++ .|++++.+|++.|+.|...+|..++..+++.++..++.. .+.+.. .+ .| +..
T Consensus 278 alL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~ 357 (625)
T KOG4422|consen 278 ALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNK 357 (625)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhH
Confidence 9999999999886 457788999999999999999999999999888432222 221111 12 22 355
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCC--------Cc---hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 048578 166 SLTRLITFYCNFGDVKSAQLLFDQMTE--------KN---VVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLV 234 (519)
Q Consensus 166 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 234 (519)
.|...+..|....+.+.|.++..-+.. ++ ..-|..+....++....+.....|+.|.-.-.-|+..+..
T Consensus 358 FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~ 437 (625)
T KOG4422|consen 358 FFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMI 437 (625)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHH
Confidence 677888889999999999888766543 22 1235567777888899999999999998887788999999
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHH--cCCh
Q 048578 235 SVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAI--HGCG 312 (519)
Q Consensus 235 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~--~g~~ 312 (519)
.++++....+.++-..+++..+...|...+.....-++..+++.. ..|+...-..+-....+ ..-+
T Consensus 438 ~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k------------~hp~tp~r~Ql~~~~ak~aad~~ 505 (625)
T KOG4422|consen 438 HLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK------------LHPLTPEREQLQVAFAKCAADIK 505 (625)
T ss_pred HHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC------------CCCCChHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888775444433333333333221 12222211112111111 1111
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHH---HHHHHHHhcCChHHHHHH
Q 048578 313 EEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYG---CLVDLLCRARLLDEAYEV 389 (519)
Q Consensus 313 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~A~~~ 389 (519)
+.....-.+|.+. .......+.++-.+.+.|..++|.++|..+.+..+--|.....+ -+++.-.+.++...|...
T Consensus 506 e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~ 583 (625)
T KOG4422|consen 506 EAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEV 583 (625)
T ss_pred HHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHH
Confidence 2222233344443 33445566666678888999999999988865433334444444 555666677888888888
Q ss_pred HHhC---CCCCCHHHHHHHHHHHcc
Q 048578 390 IRNM---PMEPNAVLWGSLLTACAS 411 (519)
Q Consensus 390 ~~~~---~~~p~~~~~~~ll~~~~~ 411 (519)
++-| ....-...-+.+...|.-
T Consensus 584 lQ~a~~~n~~~~E~La~RI~e~f~i 608 (625)
T KOG4422|consen 584 LQLASAFNLPICEGLAQRIMEDFAI 608 (625)
T ss_pred HHHHHHcCchhhhHHHHHHHHhcCc
Confidence 8777 211112234445555554
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.9e-12 Score=122.15 Aligned_cols=276 Identities=11% Similarity=0.103 Sum_probs=212.2
Q ss_pred hcCChHHHHHHHhcCCCC--chhH-HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHH--HHHHHHhccCChHHHH
Q 048578 176 NFGDVKSAQLLFDQMTEK--NVVT-WTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLV--SVLSACANLGASELGK 250 (519)
Q Consensus 176 ~~g~~~~A~~~~~~~~~~--~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~ 250 (519)
..|+++.|++.+....+. ++.. |.....+..+.|+++.|...+.++.+. .|+..... .....+...|+++.|.
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred hCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 369999999888876552 2333 333345558999999999999999765 45554333 3356788899999999
Q ss_pred HHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh-----------hhHHHHHHHHHHcCChHHHHHHH
Q 048578 251 WVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNV-----------CTWNSIIGGLAIHGCGEEAVKMF 319 (519)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~~~l~~~~~~~g~~~~a~~~~ 319 (519)
..++.+.+.. |-++.+...+...|.+.|++++|.+++..+.+... .+|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999998887 66788899999999999999999999988865321 13334444444556667777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 048578 320 WQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPN 398 (519)
Q Consensus 320 ~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~ 398 (519)
+.+.+. .+.+......+..++...|+.++|.+++++..+. +|+.... ++.+....++.+++++.++.. ...|+
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 776443 3456778889999999999999999999998772 4454322 344445669999999999888 66675
Q ss_pred HH-HHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048578 399 AV-LWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 399 ~~-~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
.. .+..+...|.. .+++++|.+.|+++.+..|+ ...+..++.++.+.|+.++|.+++++-..
T Consensus 327 ~~~l~l~lgrl~~~---~~~~~~A~~~le~al~~~P~-~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 TPLLWSTLGQLLMK---HGEWQEASLAFRAALKQRPD-AYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHH---CCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 54 56777788999 99999999999999999998 56678999999999999999999987654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.1e-13 Score=126.97 Aligned_cols=279 Identities=13% Similarity=0.056 Sum_probs=219.3
Q ss_pred ChHHHHHHHhcCCC--Cch-hHHHHHHHHHHHcCChhHHHHHHHHHHhCCC--CCCHHHHHHHHHHHhccCChHHHHHHH
Q 048578 179 DVKSAQLLFDQMTE--KNV-VTWTAMINGHVKQKNYREGIDLFRKMRDSGV--EVNELTLVSVLSACANLGASELGKWVH 253 (519)
Q Consensus 179 ~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~ 253 (519)
+..+|...|..++. +|+ .....+..+|...+++++|.++|+.+.+... .-+..+|.+.+--+-+ +-+..++
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 46788888888655 343 4456788899999999999999999987521 2256678777654322 2223333
Q ss_pred HHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 048578 254 EFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKN---VCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPD 330 (519)
Q Consensus 254 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~ 330 (519)
.+-+-.-.+..+.+|.++.++|.-+++.+.|++.|++.++-| ..+|+.+.+-+.....+|.|...|+..+. +.|.
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~r 487 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPR 487 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCch
Confidence 332222236778999999999999999999999999997754 46788888888999999999999998875 4555
Q ss_pred HH-HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 048578 331 DV-TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLT 407 (519)
Q Consensus 331 ~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~ 407 (519)
.. .|..+...|.++++++.|+-.|+++.+ --+.+......+...+.+.|+.++|+++++++ .++| |...--.-..
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 44 788889999999999999999999987 23445667778889999999999999999998 4455 3333333444
Q ss_pred HHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 048578 408 ACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIV 468 (519)
Q Consensus 408 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 468 (519)
.+.. .+++++|.+.++++.+.-|++...|..++..|.+.|+.+.|+.-|--+.+.+.+
T Consensus 566 il~~---~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 566 ILFS---LGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHh---hcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 5555 789999999999999999999999999999999999999999988887765554
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.1e-10 Score=108.35 Aligned_cols=386 Identities=13% Similarity=0.083 Sum_probs=260.9
Q ss_pred HHHHHhhcCCCChHHHHHHHhcC---CCCCcchHHHHHHHHHhcCChhHHHHHHHHH----HhCCCCCCcchHHHHHHHH
Q 048578 69 AKLIESLVNSSQIAYAHLVFNQI---INPSTFAFNTVIRGYAEAGLGHRGIQLYTQM----IGNGLDPDSFTYPILLKAC 141 (519)
Q Consensus 69 l~~~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m----~~~g~~p~~~~~~~ll~~~ 141 (519)
.-+|++. .-|+.|.+++++. ++.+...|.+....--.+|+.+...+++++- ...|+..+...|-.=...|
T Consensus 413 wlAlarL---etYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~ 489 (913)
T KOG0495|consen 413 WLALARL---ETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEAC 489 (913)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHH
Confidence 3445555 6667777776655 3456666766666666677777776666543 3457777777666666666
Q ss_pred cCccc---hHHHHHHHHHhCCCCC--chhHHHHHHHHHHhcCChHHHHHHHhcCCC---CchhHHHHHHHHHHHcCChhH
Q 048578 142 GDLRQ---VKGVHSLVVKSKDFNS--VIHSLTRLITFYCNFGDVKSAQLLFDQMTE---KNVVTWTAMINGHVKQKNYRE 213 (519)
Q Consensus 142 ~~~~~---~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~ 213 (519)
-..|. .+.+.......| +.. -..++..-...|.+.+.++-|..+|....+ .+...|......--..|..+.
T Consensus 490 e~agsv~TcQAIi~avigig-vEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Es 568 (913)
T KOG0495|consen 490 EDAGSVITCQAIIRAVIGIG-VEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRES 568 (913)
T ss_pred hhcCChhhHHHHHHHHHhhc-cccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHH
Confidence 66665 333333333333 221 245667777777788888888888777765 344566666666666777788
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC
Q 048578 214 GIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLE 293 (519)
Q Consensus 214 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 293 (519)
...+|++.... ++-....|......+-..||...|..++..+.+.. +.+...+-+-+.......++++|..+|.+...
T Consensus 569 l~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~ 646 (913)
T KOG0495|consen 569 LEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARS 646 (913)
T ss_pred HHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhc
Confidence 88888887765 23334444444555666788888888888877765 44667777777888888888888888877643
Q ss_pred --CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHH
Q 048578 294 --KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDV-TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHY 370 (519)
Q Consensus 294 --~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 370 (519)
+....|.--+......++.++|.+++++..+. -|+-. .|..+.+.+-+.++.+.|...|..-.+ .++-.+..|
T Consensus 647 ~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLW 722 (913)
T KOG0495|consen 647 ISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLW 722 (913)
T ss_pred cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHH
Confidence 45666666666666777888888888777763 55544 677777788888888888887776665 455566677
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC--------------
Q 048578 371 GCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPF-------------- 434 (519)
Q Consensus 371 ~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~-------------- 434 (519)
-.|.+.-.+.|++-+|..++++. -..| +...|...|+.-.+ .|+.+.|..++.++++.-|.
T Consensus 723 llLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR---~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~ 799 (913)
T KOG0495|consen 723 LLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELR---AGNKEQAELLMAKALQECPSSGLLWAEAIWLEPR 799 (913)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCccchhHHHHHHhccC
Confidence 77777777788888888888877 2234 56678888888777 78888888877777653332
Q ss_pred ----------------CCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 435 ----------------NDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 435 ----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
|+.....++..+....++++|.+.|++....+.
T Consensus 800 ~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~ 848 (913)
T KOG0495|consen 800 PQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP 848 (913)
T ss_pred cccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 455666677777777778888888887766443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.6e-11 Score=107.19 Aligned_cols=412 Identities=11% Similarity=0.120 Sum_probs=294.0
Q ss_pred CChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcc-hHHHHHHHHcCccchHHHHHHH
Q 048578 79 SQIAYAHLVFNQIIN---PSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSF-TYPILLKACGDLRQVKGVHSLV 154 (519)
Q Consensus 79 ~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~~~~~~ 154 (519)
+++..|..+|+.... .+...|-..+..=.++..+..|..+++..... -|-+. .|--.+..--..|++..+.+.+
T Consensus 87 ~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 677788999998854 56677888888888999999999999998873 34433 2222223333445545555555
Q ss_pred HHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC--CCchhHHHHHHHHHHHcCChhHHHHHHHHHHhC-CC-CCCH
Q 048578 155 VKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMT--EKNVVTWTAMINGHVKQKNYREGIDLFRKMRDS-GV-EVNE 230 (519)
Q Consensus 155 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~-~~~~ 230 (519)
.+--...|+...|++.|+.-.+-..++.|..++++.. .|++.+|--....=-+.|+...+..+|+...+. |- ..+.
T Consensus 165 erW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e 244 (677)
T KOG1915|consen 165 ERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAE 244 (677)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHH
Confidence 5544478999999999999999999999999999875 489999988888888999999999999887764 21 1122
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcc--hhHHHHHHHHHHhcCCHHHHHHH--------HhhcCCC---Chh
Q 048578 231 LTLVSVLSACANLGASELGKWVHEFVNKNCIILN--DKLGAALTDMYAKCGYIEEALRV--------FKIVLEK---NVC 297 (519)
Q Consensus 231 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~--------~~~~~~~---~~~ 297 (519)
..|.+....-.+...++.|..+|+-.+..- |.+ ...|......--+-|+.....+. |+.+++. |-.
T Consensus 245 ~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYD 323 (677)
T KOG1915|consen 245 ILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYD 323 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCch
Confidence 334444444455677888888888887753 333 45666666666666765555444 2333443 445
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--H-----HHHHHHHH---hccCcHHHHHHHHHHcHHhcCCCCCh
Q 048578 298 TWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDV--T-----LIAVLTAC---SHAGLIEKGKEIFYNMRRDYKVEPNV 367 (519)
Q Consensus 298 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--~-----~~~l~~~~---~~~g~~~~a~~~~~~~~~~~~~~~~~ 367 (519)
+|--.+..-...|+.+...++|++.+.. ++|-.. . |..+=-+| ....+.+.+.++++...+ -++...
T Consensus 324 sWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--lIPHkk 400 (677)
T KOG1915|consen 324 SWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--LIPHKK 400 (677)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hcCccc
Confidence 6666777777889999999999999864 566332 1 22221122 356899999999999988 566566
Q ss_pred hHHHHHH----HHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHH
Q 048578 368 KHYGCLV----DLLCRARLLDEAYEVIRNM-PMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLM 442 (519)
Q Consensus 368 ~~~~~l~----~~~~~~~~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 442 (519)
.||..+- ....++.++..|.+++... |.-|-..+|...|..-.. .++++....++++-++.+|.|..+|...
T Consensus 401 FtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElq---L~efDRcRkLYEkfle~~Pe~c~~W~ky 477 (677)
T KOG1915|consen 401 FTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQ---LREFDRCRKLYEKFLEFSPENCYAWSKY 477 (677)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHH---HhhHHHHHHHHHHHHhcChHhhHHHHHH
Confidence 6665444 4445788999999999888 989999999999999888 8899999999999999999999999999
Q ss_pred HHHHHhcCCchHHHHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCCChhHHHHHHHHHH
Q 048578 443 SNIYAAKAQWDDAGKMRRLMKERNIVKNPGCSVIEINDVVHEFMVGDGRHPCSEEIYSMLEYVA 506 (519)
Q Consensus 443 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (519)
+..-...|+++.|..+|+.......--.|...| . .++.-.-..++.+.+-.+.+++.
T Consensus 478 aElE~~LgdtdRaRaifelAi~qp~ldmpellw---k----aYIdFEi~~~E~ekaR~LYerlL 534 (677)
T KOG1915|consen 478 AELETSLGDTDRARAIFELAISQPALDMPELLW---K----AYIDFEIEEGEFEKARALYERLL 534 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH---H----HhhhhhhhcchHHHHHHHHHHHH
Confidence 999999999999999999887765433333333 1 22222333445555555555544
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-10 Score=105.74 Aligned_cols=256 Identities=12% Similarity=0.030 Sum_probs=200.7
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCC--CcchhHHHHHHHHHHhcCC
Q 048578 203 NGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCI--ILNDKLGAALTDMYAKCGY 280 (519)
Q Consensus 203 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~ 280 (519)
.++....+.+++.+-.+.....|+.-+...-+....+.....|+|+|+.+|+.+.+.+. -.|..+|..++-+--...+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 45555667778888788887777766666666666666778899999999999988742 1245566655533322222
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHh
Q 048578 281 IEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRD 360 (519)
Q Consensus 281 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 360 (519)
+.---.....+-+=-+.|...+.+-|+-.++.++|...|++..+.+ +-....|+.+..-|....+...|+.-++...+
T Consensus 315 Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd- 392 (559)
T KOG1155|consen 315 LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD- 392 (559)
T ss_pred HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHh-
Confidence 2211111222233356677778888889999999999999998854 33345888888899999999999999999988
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCch
Q 048578 361 YKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGN 438 (519)
Q Consensus 361 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 438 (519)
-.+.|-..|..|..+|.-.+...-|+-.|++. .++| |...|.+|...|.+ .++.++|++.|.+++..+..+..+
T Consensus 393 -i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~k---l~~~~eAiKCykrai~~~dte~~~ 468 (559)
T KOG1155|consen 393 -INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEK---LNRLEEAIKCYKRAILLGDTEGSA 468 (559)
T ss_pred -cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHH---hccHHHHHHHHHHHHhccccchHH
Confidence 45668889999999999999999999999999 7778 66799999999999 999999999999999999778899
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHh
Q 048578 439 YVLMSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 439 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
+..|+.+|.+.++.++|...+++-.+
T Consensus 469 l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 469 LVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999988765
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.7e-11 Score=114.80 Aligned_cols=255 Identities=13% Similarity=0.017 Sum_probs=145.6
Q ss_pred HHHHHHhcCChHHHHHHHhcCCC--Cch--hHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 048578 170 LITFYCNFGDVKSAQLLFDQMTE--KNV--VTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGA 245 (519)
Q Consensus 170 l~~~~~~~g~~~~A~~~~~~~~~--~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 245 (519)
...++.+.|+.+.|...+.+..+ |+. ...-.....+...|+++.|...++.+.+.. +-+......+...+...|+
T Consensus 124 aA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d 202 (409)
T TIGR00540 124 AAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGA 202 (409)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhh
Confidence 34556677888888888877643 333 233334677778888888888888888764 2245567777778888888
Q ss_pred hHHHHHHHHHHHHcCCCcchhHHHHHHHHH---Hhc----CCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHH
Q 048578 246 SELGKWVHEFVNKNCIILNDKLGAALTDMY---AKC----GYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEA 315 (519)
Q Consensus 246 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~----g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a 315 (519)
++.+..++..+.+.+..........-..++ ... ...+...+.+....+ .+...+..+...+...|+.++|
T Consensus 203 ~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A 282 (409)
T TIGR00540 203 WQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSA 282 (409)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHH
Confidence 888888888888876433322211111111 111 122233333443332 2556666666777777777777
Q ss_pred HHHHHHHHHCCCCCCHHH---HHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 048578 316 VKMFWQMQMSGIKPDDVT---LIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRN 392 (519)
Q Consensus 316 ~~~~~~m~~~g~~p~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 392 (519)
.+++++..+. .||... ...........++.+.+.+.++...+...-.|+.....++...+.+.|++++|.+.|+.
T Consensus 283 ~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~ 360 (409)
T TIGR00540 283 QEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKN 360 (409)
T ss_pred HHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 7777776654 333321 01111122334556666666666555222222113444566666666666666666663
Q ss_pred --C-CCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHh
Q 048578 393 --M-PMEPNAVLWGSLLTACASADDGANVELAEIAMERLIK 430 (519)
Q Consensus 393 --~-~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~ 430 (519)
. ...|+...+..+...+.. .|+.++|.+++++...
T Consensus 361 a~a~~~~p~~~~~~~La~ll~~---~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 361 VAACKEQLDANDLAMAADAFDQ---AGDKAEAAAMRQDSLG 398 (409)
T ss_pred hHHhhcCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHH
Confidence 2 445666666666666666 6666666666665543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.5e-10 Score=106.92 Aligned_cols=438 Identities=12% Similarity=0.061 Sum_probs=330.5
Q ss_pred CCCCCcccHHHH--HHhc-cCchHHHHHH----HHHHHhcCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCCC----
Q 048578 25 NTATKSHHHLPL--LQKC-THLVQFKQVH----AQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIIN---- 93 (519)
Q Consensus 25 ~~~p~~~~~~~~--l~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~---- 93 (519)
.++.+...+... |.-. +...-...++ ..+...|+..+..-|-.=...+-.. |..-.+..+...++.
T Consensus 435 ~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~a---gsv~TcQAIi~avigigvE 511 (913)
T KOG0495|consen 435 IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDA---GSVITCQAIIRAVIGIGVE 511 (913)
T ss_pred hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhc---CChhhHHHHHHHHHhhccc
Confidence 444555555543 3222 3333334444 3455567777776666666666666 777666666655532
Q ss_pred --CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHHHHHhCCC-CCchhHHHHH
Q 048578 94 --PSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKSKDF-NSVIHSLTRL 170 (519)
Q Consensus 94 --~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l 170 (519)
.--.+|+.-...|.+.+-++-|..+|....+- ++-+...|.-....--..|..+.+..++.+.-.. +-....+...
T Consensus 512 eed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ 590 (913)
T KOG0495|consen 512 EEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMY 590 (913)
T ss_pred cchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHH
Confidence 23468888899999999999999999998873 2234445655555444555566666665554323 3345566667
Q ss_pred HHHHHhcCChHHHHHHHhcCCC---CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChH
Q 048578 171 ITFYCNFGDVKSAQLLFDQMTE---KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASE 247 (519)
Q Consensus 171 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 247 (519)
..-+-..|++..|..++...-+ .+...|-.-+..-....+++.|..+|.+.... .|+...|..-+...--.+..+
T Consensus 591 ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~e 668 (913)
T KOG0495|consen 591 AKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVE 668 (913)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHH
Confidence 7788889999999999988765 35567888889999999999999999988764 577777766666666788999
Q ss_pred HHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 048578 248 LGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEK---NVCTWNSIIGGLAIHGCGEEAVKMFWQMQM 324 (519)
Q Consensus 248 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 324 (519)
+|.+++++.++.- +.-...|-.+...+-+.++.+.|...|..-.+. .+..|-.+...--+.|++-.|..++++.+-
T Consensus 669 eA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarl 747 (913)
T KOG0495|consen 669 EALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARL 747 (913)
T ss_pred HHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh
Confidence 9999999988863 555677888889999999999999999887653 455688888888889999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHH
Q 048578 325 SGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGS 404 (519)
Q Consensus 325 ~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ 404 (519)
.+ +-+...|...|+.-.+.|+.+.|.....+..+ .++.+...|..-|....+.++-....+.+++... |......
T Consensus 748 kN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce~--dphVlla 822 (913)
T KOG0495|consen 748 KN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEH--DPHVLLA 822 (913)
T ss_pred cC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhccC--CchhHHH
Confidence 64 55677999999999999999999999999988 5677788898888888888888888888887743 4445555
Q ss_pred HHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCcccEEEEC
Q 048578 405 LLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPGCSVIEIN 479 (519)
Q Consensus 405 ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~ 479 (519)
+...+-. ..+++.|.+.|.++.+.+|++..+|..+-..+.+.|.-++-.+++.+... ..|.-|..|.-+.
T Consensus 823 ia~lfw~---e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~--~EP~hG~~W~avS 892 (913)
T KOG0495|consen 823 IAKLFWS---EKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET--AEPTHGELWQAVS 892 (913)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc--cCCCCCcHHHHHh
Confidence 5566666 67899999999999999999999999999999999999999999988766 4555666664444
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.6e-11 Score=104.13 Aligned_cols=216 Identities=14% Similarity=0.101 Sum_probs=124.8
Q ss_pred cCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHh
Q 048578 109 AGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFD 188 (519)
Q Consensus 109 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 188 (519)
.++.++|+++|-+|.+. -+.+..+.-+|.+.|-..|..|.|+++-+
T Consensus 48 s~Q~dKAvdlF~e~l~~----------------------------------d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ 93 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE----------------------------------DPETFEAHLTLGNLFRSRGEVDRAIRIHQ 93 (389)
T ss_pred hcCcchHHHHHHHHHhc----------------------------------CchhhHHHHHHHHHHHhcchHHHHHHHHH
Confidence 56778888888888872 23334456677788888888899988888
Q ss_pred cCCC-Cch------hHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCC
Q 048578 189 QMTE-KNV------VTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCI 261 (519)
Q Consensus 189 ~~~~-~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 261 (519)
.+.+ ||. .+.-.|..-|...|-+|.|+.+|..+.+.+ .--......++..|-...+|++|...-.++.+.+-
T Consensus 94 ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~ 172 (389)
T COG2956 94 TLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGG 172 (389)
T ss_pred HHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCC
Confidence 7765 443 234456677888888899999888887754 33455677788888888888888888887777653
Q ss_pred Ccch----hHHHHHHHHHHhcCCHHHHHHHHhhcCCCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 048578 262 ILND----KLGAALTDMYAKCGYIEEALRVFKIVLEKN---VCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTL 334 (519)
Q Consensus 262 ~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 334 (519)
.+.. ..|.-+...+....+++.|..++.+..+.| +.+--.+.......|+++.|.+.++...+.+..--..+.
T Consensus 173 q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl 252 (389)
T COG2956 173 QTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVL 252 (389)
T ss_pred ccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHH
Confidence 3321 122233333333444444444444443321 122222333444444444444444444443222222234
Q ss_pred HHHHHHHhccCcHHHHHHHHHHcHH
Q 048578 335 IAVLTACSHAGLIEKGKEIFYNMRR 359 (519)
Q Consensus 335 ~~l~~~~~~~g~~~~a~~~~~~~~~ 359 (519)
..|..+|.+.|+.++....+..+.+
T Consensus 253 ~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 253 EMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4444444444444444444444433
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.9e-14 Score=127.62 Aligned_cols=251 Identities=14% Similarity=0.160 Sum_probs=109.7
Q ss_pred HHHHHHHhcCChHHHHHHHhcC-CC----CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 048578 169 RLITFYCNFGDVKSAQLLFDQM-TE----KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANL 243 (519)
Q Consensus 169 ~l~~~~~~~g~~~~A~~~~~~~-~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 243 (519)
.+...+.+.|++++|+++++.. .. .|...|..+...+...++++.|.+.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 5577788999999999999543 22 24555666777778899999999999999876533 45566666666 688
Q ss_pred CChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcC-----CCChhhHHHHHHHHHHcCChHHHHHH
Q 048578 244 GASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVL-----EKNVCTWNSIIGGLAIHGCGEEAVKM 318 (519)
Q Consensus 244 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~ 318 (519)
+++++|..++....+.. +++..+..++..+...++++++.++++.+. ..+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999887766543 566777888889999999999999998853 34667888899999999999999999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC
Q 048578 319 FWQMQMSGIKPD-DVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PME 396 (519)
Q Consensus 319 ~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~ 396 (519)
+++..+. .|+ ......++..+...|+.+++..++....+. .+.++..+..+..+|...|+.++|+.+|++. ...
T Consensus 169 ~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 169 YRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 9999885 565 667888999999999999999999998883 3567778889999999999999999999998 445
Q ss_pred C-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHh
Q 048578 397 P-NAVLWGSLLTACASADDGANVELAEIAMERLIK 430 (519)
Q Consensus 397 p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~ 430 (519)
| |......+..++.. .|+.++|.++.+++.+
T Consensus 245 p~d~~~~~~~a~~l~~---~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQ---AGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT--------------------
T ss_pred cccccccccccccccc---cccccccccccccccc
Confidence 6 66677888888999 9999999999888764
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.9e-11 Score=109.18 Aligned_cols=255 Identities=10% Similarity=0.076 Sum_probs=183.8
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHH--HHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCH
Q 048578 204 GHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVL--SACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYI 281 (519)
Q Consensus 204 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 281 (519)
-+.+.|+++.|++++.-+.+..-+.-...-+.+- .......++..|..+-+..+..+ .-++.....-.......|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 4677888888888887776653222222222222 22222346677777666665543 23333333333444567999
Q ss_pred HHHHHHHhhcCCCChhhHHHHH---HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcH
Q 048578 282 EEALRVFKIVLEKNVCTWNSII---GGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMR 358 (519)
Q Consensus 282 ~~a~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 358 (519)
++|.+.|.+....|...-.+|. -.+-..|+.++|++.|-++..- +..+......+...|....+...|++++....
T Consensus 507 dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 9999999999888776555544 3567889999999999887532 24467788889999999999999999998776
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCC
Q 048578 359 RDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFND 436 (519)
Q Consensus 359 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 436 (519)
. -++.|+.....|...|-+.|+-..|.+..-+- ..-| +..+..-|...|.. ..=.++++.+|+++.-++|. .
T Consensus 586 s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyid---tqf~ekai~y~ekaaliqp~-~ 659 (840)
T KOG2003|consen 586 S--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYID---TQFSEKAINYFEKAALIQPN-Q 659 (840)
T ss_pred c--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHh---hHHHHHHHHHHHHHHhcCcc-H
Confidence 5 67778899999999999999999999876554 3334 56666666666777 77789999999999989987 5
Q ss_pred chHHH-HHHHHHhcCCchHHHHHHHHHHhCC
Q 048578 437 GNYVL-MSNIYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 437 ~~~~~-l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
.-|.. ++.++.+.|++.+|..+++...++-
T Consensus 660 ~kwqlmiasc~rrsgnyqka~d~yk~~hrkf 690 (840)
T KOG2003|consen 660 SKWQLMIASCFRRSGNYQKAFDLYKDIHRKF 690 (840)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 56654 4556678899999999999986643
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.5e-11 Score=116.27 Aligned_cols=280 Identities=9% Similarity=0.027 Sum_probs=201.2
Q ss_pred HHhcCChHHHHHHHhcCCC--Cch-hHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhccCChHH
Q 048578 174 YCNFGDVKSAQLLFDQMTE--KNV-VTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNE--LTLVSVLSACANLGASEL 248 (519)
Q Consensus 174 ~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~ 248 (519)
....|+++.|.+.+....+ |+. ..+-....++.+.|+++.|.+.+.+..+.. |+. ..-......+...|+++.
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHH
Confidence 3467999999999988765 433 334455677888999999999999987653 443 233345777888999999
Q ss_pred HHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHH----HHHHHHHcCChHHHHHHHHH
Q 048578 249 GKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEK---NVCTWNS----IIGGLAIHGCGEEAVKMFWQ 321 (519)
Q Consensus 249 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~----l~~~~~~~g~~~~a~~~~~~ 321 (519)
|...++.+.+.. |-++.+...+..++...|++++|.+.+..+.+. +...+.. ...+....+..++..+.+..
T Consensus 172 Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 172 ARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999986 667788999999999999999999999988753 3332321 11111222333333334444
Q ss_pred HHHCC---CCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhH---HHHHHHHHHhcCChHHHHHHHHhC-C
Q 048578 322 MQMSG---IKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKH---YGCLVDLLCRARLLDEAYEVIRNM-P 394 (519)
Q Consensus 322 m~~~g---~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~-~ 394 (519)
+.... .+.+...+..+...+...|+.++|.+++++..+. . |+... .....-.....++.+.+.+.++.. .
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~-pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--L-GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--C-CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 44321 1236778888999999999999999999999883 2 33221 112222233457788888888777 4
Q ss_pred CCCCH---HHHHHHHHHHccccCCCCHHHHHHHHH--HHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 048578 395 MEPNA---VLWGSLLTACASADDGANVELAEIAME--RLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMK 463 (519)
Q Consensus 395 ~~p~~---~~~~~ll~~~~~~~~~~~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (519)
..|+. ....++...+.+ .|++++|.+.|+ ...+..|+ +..+..++.++.+.|+.++|.+++++-.
T Consensus 328 ~~p~~~~~~ll~sLg~l~~~---~~~~~~A~~~le~a~a~~~~p~-~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 328 NVDDKPKCCINRALGQLLMK---HGEFIEAADAFKNVAACKEQLD-ANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred hCCCChhHHHHHHHHHHHHH---cccHHHHHHHHHHhHHhhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45644 455677788888 999999999999 46667776 4557799999999999999999998753
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.9e-12 Score=122.61 Aligned_cols=249 Identities=13% Similarity=0.049 Sum_probs=195.3
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCC--CcchhHHHHHHHHHHhcCCHHHHHH
Q 048578 209 KNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCI--ILNDKLGAALTDMYAKCGYIEEALR 286 (519)
Q Consensus 209 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~ 286 (519)
-+..+|...|+....+ +.-+......+..+|...+++++++.+|+.+.+... ..+..+|.+.+--+-+.=.+.---+
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 4568899999996554 333446777888999999999999999999988641 2456677766544433211111111
Q ss_pred HHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCC
Q 048578 287 VFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKP-DDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEP 365 (519)
Q Consensus 287 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 365 (519)
-+-.+-...+.+|-++..+|.-+++.+.|++.|++.+. +.| ...+|+.+..-+.....+|.|...|+.... -.+.
T Consensus 412 ~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~r 487 (638)
T KOG1126|consen 412 DLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPR 487 (638)
T ss_pred HHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCch
Confidence 11222334678999999999999999999999999987 456 566888888888999999999999999876 1122
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHH
Q 048578 366 NVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPNA-VLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMS 443 (519)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 443 (519)
+-..|.-+.-.|.+.++++.|.-.|+++ .+.|.. +....+...+.+ .|+.++|+++++++..++|.|+-....-+
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~---~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQ---LKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHH---hhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 2334555778899999999999999999 888854 455566666788 89999999999999999999999999999
Q ss_pred HHHHhcCCchHHHHHHHHHHhC
Q 048578 444 NIYAAKAQWDDAGKMRRLMKER 465 (519)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~m~~~ 465 (519)
.++...+++++|+..++++++.
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHh
Confidence 9999999999999999999873
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.3e-09 Score=99.07 Aligned_cols=347 Identities=12% Similarity=0.066 Sum_probs=238.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHHHHHhCCCCCchhHH--HHHHHHHHhc
Q 048578 100 NTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKSKDFNSVIHSL--TRLITFYCNF 177 (519)
Q Consensus 100 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~ 177 (519)
-.....+-+.|....|+..|...... .+-.=..|..|...+. + .+....+... .+.+.... --+..++-..
T Consensus 168 YL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~lit---~-~e~~~~l~~~--l~~~~h~M~~~F~~~a~~el 240 (559)
T KOG1155|consen 168 YLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELIT---D-IEILSILVVG--LPSDMHWMKKFFLKKAYQEL 240 (559)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhhc---h-HHHHHHHHhc--CcccchHHHHHHHHHHHHHH
Confidence 33334455667777888877776652 1111122332222221 1 1111222111 22221111 1234556666
Q ss_pred CChHHHHHHHhcCCC---Cc-hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCC--CCCHHHHHHHHHHHhccCChHHHHH
Q 048578 178 GDVKSAQLLFDQMTE---KN-VVTWTAMINGHVKQKNYREGIDLFRKMRDSGV--EVNELTLVSVLSACANLGASELGKW 251 (519)
Q Consensus 178 g~~~~A~~~~~~~~~---~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~ 251 (519)
.+.+++..-.+.... |+ ...-+....+.-...++++|+.+|+++.++.+ --|..+|+.++-.-..... ..
T Consensus 241 ~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk----Ls 316 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK----LS 316 (559)
T ss_pred HHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH----HH
Confidence 677776665555543 22 22223334455677899999999999998731 1267788887755332211 11
Q ss_pred HHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 048578 252 VHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKN---VCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIK 328 (519)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 328 (519)
++.+-...-.+--+.|...+.+-|.-.++.++|...|++..+-| ..+|+.+.+-|...++...|++-++..++-. +
T Consensus 317 ~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p 395 (559)
T KOG1155|consen 317 YLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-P 395 (559)
T ss_pred HHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-c
Confidence 22221111124456677788888999999999999999997754 4679999999999999999999999998853 5
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHH
Q 048578 329 PDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM--PMEPNAVLWGSLL 406 (519)
Q Consensus 329 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~p~~~~~~~ll 406 (519)
-|-..|..|.++|.-.+...-|+-+|++..+ --+-|...|.+|..+|.+.++.++|++.|+.. .-+.+...+..+.
T Consensus 396 ~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~La 473 (559)
T KOG1155|consen 396 RDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLA 473 (559)
T ss_pred hhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHH
Confidence 5667999999999999999999999999987 44567899999999999999999999999988 2244667899999
Q ss_pred HHHccccCCCCHHHHHHHHHHHHh-------hCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 048578 407 TACASADDGANVELAEIAMERLIK-------LEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMK 463 (519)
Q Consensus 407 ~~~~~~~~~~~~~~a~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (519)
..+-. .++.++|...+++.++ .+|....+...|+.-+.+.+++++|..+.....
T Consensus 474 kLye~---l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 474 KLYEE---LKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHH---HHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 99999 9999999999999887 334334555568888999999999998776543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.8e-09 Score=96.37 Aligned_cols=408 Identities=12% Similarity=0.103 Sum_probs=304.0
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCCC--CCc-chHHHHHHHHHhcCChhHHHHHHHHHH
Q 048578 47 KQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIIN--PST-FAFNTVIRGYAEAGLGHRGIQLYTQMI 123 (519)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~--~~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~ 123 (519)
+.+++..+.-. ..+...|-..+.+=.++ ..+..|..+|++.+. |-+ ..|...+..=-..|++..|.++|+...
T Consensus 93 RSv~ERALdvd-~r~itLWlkYae~Emkn---k~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~ 168 (677)
T KOG1915|consen 93 RSVFERALDVD-YRNITLWLKYAEFEMKN---KQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWM 168 (677)
T ss_pred HHHHHHHHhcc-cccchHHHHHHHHHHhh---hhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 55666666554 44566676777777777 999999999998854 322 346666666667899999999999998
Q ss_pred hCCCCCCcchHHHHHHHHcCccchHHHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--C----chhH
Q 048578 124 GNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTE--K----NVVT 197 (519)
Q Consensus 124 ~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~----~~~~ 197 (519)
+ ..|+...|.+.++--.+.+..+.+.....+.--..|+...|-.....-.++|....|..+|+...+ . +...
T Consensus 169 ~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~l 246 (677)
T KOG1915|consen 169 E--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEIL 246 (677)
T ss_pred c--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 7 689999999999988777776666666655444689999999999999999999999999988765 2 2345
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCChHHHHHH--------HHHHHHcCCCcchhH
Q 048578 198 WTAMINGHVKQKNYREGIDLFRKMRDSGVEVN--ELTLVSVLSACANLGASELGKWV--------HEFVNKNCIILNDKL 267 (519)
Q Consensus 198 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~--------~~~~~~~~~~~~~~~ 267 (519)
+++....=.++..++.|.-+|+-..+. ++-+ ...|......--+-|+....+.. ++..++.+ +.|-.+
T Consensus 247 fvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDs 324 (677)
T KOG1915|consen 247 FVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDS 324 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchH
Confidence 566666666778899999999888876 2222 34555555555566665555433 33344443 567777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCCh-----hhHHHHH--------HHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 048578 268 GAALTDMYAKCGYIEEALRVFKIVLEKNV-----CTWNSII--------GGLAIHGCGEEAVKMFWQMQMSGIKPDDVTL 334 (519)
Q Consensus 268 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~l~--------~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 334 (519)
+--.++.--..|+.+...++|++.+..-+ ..|...| -.-....+++.+.++++..++. ++....||
T Consensus 325 WfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtF 403 (677)
T KOG1915|consen 325 WFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTF 403 (677)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchH
Confidence 77888888888999999999999865311 1222222 1123568999999999998873 34444466
Q ss_pred HHH----HHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 048578 335 IAV----LTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTA 408 (519)
Q Consensus 335 ~~l----~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~ 408 (519)
.-+ ..--.++.++..|.+++.... |.-|-..+|...|..-.+.++++.+..++++. ...| |..+|......
T Consensus 404 aKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaEl 480 (677)
T KOG1915|consen 404 AKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAEL 480 (677)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHH
Confidence 544 333457789999999999886 55688899999999999999999999999998 6667 56788888777
Q ss_pred HccccCCCCHHHHHHHHHHHHhhCCC--CCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcc
Q 048578 409 CASADDGANVELAEIAMERLIKLEPF--NDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVK 469 (519)
Q Consensus 409 ~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 469 (519)
-.. .|+.+.|..+|+-+++.... ....|...++.-...|.+++|..+++++.++.-..
T Consensus 481 E~~---LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~ 540 (677)
T KOG1915|consen 481 ETS---LGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHV 540 (677)
T ss_pred HHH---hhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccc
Confidence 777 99999999999998876532 23567778888889999999999999998876543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.5e-09 Score=105.10 Aligned_cols=419 Identities=14% Similarity=0.136 Sum_probs=282.8
Q ss_pred HhccCchHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcC---CCCCcchHHHHHHHHHhcCChhH
Q 048578 38 QKCTHLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQI---INPSTFAFNTVIRGYAEAGLGHR 114 (519)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~ll~~~~~~g~~~~ 114 (519)
-+.++...+..++.++++.. +.+...|..|...|-.. |+.+++...+-.+ .+.|...|..+.....+.|++++
T Consensus 150 farg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqr---Gd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQR---GDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHc---ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHH
Confidence 34477777788888888775 66788899999999999 9999998877554 45677889999999999999999
Q ss_pred HHHHHHHHHhCCCCCCcc-hHHHHHHHHcCccchHHHHHHHHHhCCCCC--chhHH----HHHHHHHHhcCChHHHHHHH
Q 048578 115 GIQLYTQMIGNGLDPDSF-TYPILLKACGDLRQVKGVHSLVVKSKDFNS--VIHSL----TRLITFYCNFGDVKSAQLLF 187 (519)
Q Consensus 115 a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~l~~~~~~~g~~~~A~~~~ 187 (519)
|.-.|.+.++.. |+.. .+--=...|-+.|+...+.+-+.+.-...| +..-+ -..+..+...++-+.|.+.+
T Consensus 226 A~~cy~rAI~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 226 ARYCYSRAIQAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHhcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999999853 3332 222233445566664444443333221233 22222 33456677788888899888
Q ss_pred hcCCC-----CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC---------------------------CCHHHHHH
Q 048578 188 DQMTE-----KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVE---------------------------VNELTLVS 235 (519)
Q Consensus 188 ~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~---------------------------~~~~~~~~ 235 (519)
+.... -+-..++.++..+.+..+++.+......+...... ++... .-
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~r 382 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IR 382 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-Hh
Confidence 87754 23456889999999999999999988888762211 22222 12
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCC--CcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC----ChhhHHHHHHHHHHc
Q 048578 236 VLSACANLGASELGKWVHEFVNKNCI--ILNDKLGAALTDMYAKCGYIEEALRVFKIVLEK----NVCTWNSIIGGLAIH 309 (519)
Q Consensus 236 ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~ 309 (519)
+.-++...+..+....+.......+. .-+...|.-+..+|...|++.+|+.+|..+... +...|-.+..+|...
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence 22334556666667777777777763 445678889999999999999999999998653 567899999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHcHH-------hcCCCCChhHHHHHHHHHHhcC
Q 048578 310 GCGEEAVKMFWQMQMSGIKPDD-VTLIAVLTACSHAGLIEKGKEIFYNMRR-------DYKVEPNVKHYGCLVDLLCRAR 381 (519)
Q Consensus 310 g~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~ 381 (519)
|..++|.+.|+..... .|+. ..-..|...+.+.|+.++|.+.+..+.. ..+..|+...-......+...|
T Consensus 463 ~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~g 540 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVG 540 (895)
T ss_pred hhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhh
Confidence 9999999999999874 4554 4667777888999999999999988532 1245566666666777888888
Q ss_pred ChHHHHHHHHhC--------CCCC-----------------CHHHHHHHHHHHccccCCCCHHHHHHHHHHH-----H--
Q 048578 382 LLDEAYEVIRNM--------PMEP-----------------NAVLWGSLLTACASADDGANVELAEIAMERL-----I-- 429 (519)
Q Consensus 382 ~~~~A~~~~~~~--------~~~p-----------------~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~-----~-- 429 (519)
+.++=+.+...| -+-| ........+.+-.. .++.......+..- .
T Consensus 541 k~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k---~~~~~~~~~~l~d~~~~~~~e~ 617 (895)
T KOG2076|consen 541 KREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREK---ATDDNVMEKALSDGTEFRAVEL 617 (895)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhc---cCchHHhhhcccchhhhhhhhh
Confidence 888755544333 0101 11122222222222 22211111111111 0
Q ss_pred -hhCCCCC-chHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 048578 430 -KLEPFND-GNYVLMSNIYAAKAQWDDAGKMRRLMKERNIV 468 (519)
Q Consensus 430 -~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 468 (519)
.+.-++- ..+..++..+.+.+++++|+.+...+.+...-
T Consensus 618 ~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f 658 (895)
T KOG2076|consen 618 RGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIF 658 (895)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhh
Confidence 0111111 34557788889999999999999998876553
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.2e-09 Score=101.80 Aligned_cols=261 Identities=11% Similarity=0.006 Sum_probs=210.3
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHH
Q 048578 196 VTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMY 275 (519)
Q Consensus 196 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 275 (519)
........-+...+++.+..++.+...+.. ++....+..-|.++...|+...-..+-..+.+.- |..+.+|-++.--|
T Consensus 245 dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YY 322 (611)
T KOG1173|consen 245 DLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYY 322 (611)
T ss_pred HHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHH
Confidence 334444556778899999999999988763 4555666666778888898888887777777764 77788899999999
Q ss_pred HhcCCHHHHHHHHhhcCCCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 048578 276 AKCGYIEEALRVFKIVLEKN---VCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKE 352 (519)
Q Consensus 276 ~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~ 352 (519)
.-.|+..+|.+.|.+...-| ...|-.+..+|+-.|..++|+..+...-+. ++-..-.+.-+.--|.+.++.+.|.+
T Consensus 323 l~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~ 401 (611)
T KOG1173|consen 323 LMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEK 401 (611)
T ss_pred HHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHH
Confidence 99999999999999886544 468999999999999999999999887653 11122234444556888999999999
Q ss_pred HHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--------CCCC-CHHHHHHHHHHHccccCCCCHHHHHH
Q 048578 353 IFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM--------PMEP-NAVLWGSLLTACASADDGANVELAEI 423 (519)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--------~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~ 423 (519)
+|..... -.|-|+...+-+.-.....+.+.+|..+|+.. +-.+ -..+++.|..+|.+ .+.+++|+.
T Consensus 402 Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk---l~~~~eAI~ 476 (611)
T KOG1173|consen 402 FFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK---LNKYEEAID 476 (611)
T ss_pred HHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH---HhhHHHHHH
Confidence 9999876 44556777888888888889999999998876 1112 44578889999999 999999999
Q ss_pred HHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048578 424 AMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 424 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
.+++++.+.|.++.++..++.+|...|+++.|.+.|.+..-
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988654
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.2e-10 Score=99.34 Aligned_cols=287 Identities=12% Similarity=0.056 Sum_probs=219.8
Q ss_pred hcCChHHHHHHHhcCCCCchhH---HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH------HHHHHHHHHHhccCCh
Q 048578 176 NFGDVKSAQLLFDQMTEKNVVT---WTAMINGHVKQKNYREGIDLFRKMRDSGVEVNE------LTLVSVLSACANLGAS 246 (519)
Q Consensus 176 ~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~------~~~~~ll~~~~~~~~~ 246 (519)
-..+.++|.+.|-+|.+.|..+ .-+|.+.|.+.|..|+|+++-+.+.+. ||. .....+..-|...|-+
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 3588999999999998866554 457889999999999999999998875 332 2344566678899999
Q ss_pred HHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhh--------HHHHHHHHHHcCChHHHHHH
Q 048578 247 ELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCT--------WNSIIGGLAIHGCGEEAVKM 318 (519)
Q Consensus 247 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--------~~~l~~~~~~~g~~~~a~~~ 318 (519)
|.|+.+|..+.+.+ ..-......|+..|-...++++|+++-+++.+-+... |--+...+....+++.|..+
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 99999999998865 3445567788999999999999999988876644433 44455556667899999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 048578 319 FWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP 397 (519)
Q Consensus 319 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p 397 (519)
+.+..+.+ +-....-..+.+.....|+++.|.+.++.+.+. +..--..+...|..+|...|+.++...++..+ ...+
T Consensus 203 l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 203 LKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred HHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 99988754 223335556778899999999999999999884 44344567788999999999999999999887 4455
Q ss_pred CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH---hcCCchHHHHHHHHHHhCCCccCCc
Q 048578 398 NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYA---AKAQWDDAGKMRRLMKERNIVKNPG 472 (519)
Q Consensus 398 ~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~---~~g~~~~A~~~~~~m~~~~~~~~~~ 472 (519)
....-..+...-.. ....+.|...+.+-++..|. ...+..++.... .-|.+.+-+.++++|....++..|.
T Consensus 281 g~~~~l~l~~lie~---~~G~~~Aq~~l~~Ql~r~Pt-~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~ 354 (389)
T COG2956 281 GADAELMLADLIEL---QEGIDAAQAYLTRQLRRKPT-MRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPR 354 (389)
T ss_pred CccHHHHHHHHHHH---hhChHHHHHHHHHHHhhCCc-HHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCC
Confidence 55555555555444 56678888888888888887 667777777654 3356788888999998776665544
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.7e-11 Score=106.69 Aligned_cols=199 Identities=15% Similarity=0.029 Sum_probs=161.6
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048578 263 LNDKLGAALTDMYAKCGYIEEALRVFKIVLEK---NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLT 339 (519)
Q Consensus 263 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 339 (519)
.....+..+...+...|++++|.+.+++..+. +...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 34556777788888889999998888877542 45677778888899999999999999988754 345567788888
Q ss_pred HHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCC
Q 048578 340 ACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGAN 417 (519)
Q Consensus 340 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~ 417 (519)
.+...|++++|...++........+.....+..+...+...|++++|...+++. ...| +...+..+...+.. .|+
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~---~~~ 184 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYL---RGQ 184 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHH---cCC
Confidence 899999999999999998873222334556777888999999999999999888 4445 45577778888888 899
Q ss_pred HHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048578 418 VELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKER 465 (519)
Q Consensus 418 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 465 (519)
+++|...++++.+..|.++..+..++.++...|+.++|..+.+.+...
T Consensus 185 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 185 YKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 999999999999988888888889999999999999999998887653
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.8e-10 Score=100.95 Aligned_cols=279 Identities=12% Similarity=0.104 Sum_probs=204.0
Q ss_pred cCChHHHHHHHhcCCC---CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 048578 177 FGDVKSAQLLFDQMTE---KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVH 253 (519)
Q Consensus 177 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 253 (519)
.|++..|++...+-.+ .....|..-+.+.-+.|+.+.+-.++.+.-+..-.++..............|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 5888888888877554 2334566666777888899999988888876533455556666667788888888888888
Q ss_pred HHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh-----------hhHHHHHHHHHHcCChHHHHHHHHHH
Q 048578 254 EFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNV-----------CTWNSIIGGLAIHGCGEEAVKMFWQM 322 (519)
Q Consensus 254 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~~~l~~~~~~~g~~~~a~~~~~~m 322 (519)
..+.+.+ +.++.+......+|.+.|++.....++.++.+.+. .+|..++.-....+..+.-...|++.
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 8888876 66778888888999999999999998888866422 36777777666666666666677666
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC
Q 048578 323 QMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM----PMEPN 398 (519)
Q Consensus 323 ~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~p~ 398 (519)
..+ .+-+...-..++.-+.+.|+.++|.++..+..++ +..|+... .-.+.+-++...-.+..++. +..|
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L~~----~~~~l~~~d~~~l~k~~e~~l~~h~~~p- 328 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRLCR----LIPRLRPGDPEPLIKAAEKWLKQHPEDP- 328 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhHHH----HHhhcCCCCchHHHHHHHHHHHhCCCCh-
Confidence 433 3445556667777888889999999988888873 66666222 22334555555555544444 4333
Q ss_pred HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 048578 399 AVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIV 468 (519)
Q Consensus 399 ~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 468 (519)
-.+..|...|.+ .+.+.+|...|+.+++..|. ...|..++.+|.+.|+.++|.++.++....-.+
T Consensus 329 -~L~~tLG~L~~k---~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~ 393 (400)
T COG3071 329 -LLLSTLGRLALK---NKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLLTRQ 393 (400)
T ss_pred -hHHHHHHHHHHH---hhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcC
Confidence 567777778888 88899999999988888886 788999999999999999999988887644333
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.7e-09 Score=94.75 Aligned_cols=251 Identities=15% Similarity=0.041 Sum_probs=174.0
Q ss_pred HHHHHhcCChHHHHHHHhcCCCC----chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCh
Q 048578 171 ITFYCNFGDVKSAQLLFDQMTEK----NVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGAS 246 (519)
Q Consensus 171 ~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 246 (519)
+.+.-..|+.+.+-+++.+..++ +....-+..+.....|+++.|..-+.++.+.+. -.+........+|.+.|++
T Consensus 125 A~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~p-r~~~vlrLa~r~y~~~g~~ 203 (400)
T COG3071 125 AEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTP-RHPEVLRLALRAYIRLGAW 203 (400)
T ss_pred HHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCc-CChHHHHHHHHHHHHhccH
Confidence 34445556666666666665442 223344455556666666666666666665542 2344555666666666666
Q ss_pred HHHHHHHHHHHHcCCCcc-------hhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHH
Q 048578 247 ELGKWVHEFVNKNCIILN-------DKLGAALTDMYAKCGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAV 316 (519)
Q Consensus 247 ~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~ 316 (519)
.....+...+.+.+.-.+ ..+++.+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.
T Consensus 204 ~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~ 283 (400)
T COG3071 204 QALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQ 283 (400)
T ss_pred HHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHH
Confidence 666666666666654333 22444555545444555555556666543 36777778888889999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 048578 317 KMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PM 395 (519)
Q Consensus 317 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~ 395 (519)
++..+..+.+..|+.. ..-.+.+.++.+.-++..++-.+.++..| ..+..|...|.+.+.|.+|.+.|+.. ..
T Consensus 284 ~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~ 357 (400)
T COG3071 284 EIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKL 357 (400)
T ss_pred HHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 9999998887777622 22346677888888888888777555444 67888999999999999999999987 88
Q ss_pred CCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhh
Q 048578 396 EPNAVLWGSLLTACASADDGANVELAEIAMERLIKL 431 (519)
Q Consensus 396 ~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~ 431 (519)
.|+..+|..+..++.. .|+.++|.+..++....
T Consensus 358 ~~s~~~~~~la~~~~~---~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 358 RPSASDYAELADALDQ---LGEPEEAEQVRREALLL 390 (400)
T ss_pred CCChhhHHHHHHHHHH---cCChHHHHHHHHHHHHH
Confidence 9999999999999999 99999999999888754
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.6e-10 Score=107.85 Aligned_cols=427 Identities=11% Similarity=0.044 Sum_probs=250.4
Q ss_pred CCCCCCCCCcccHHHHHHhccCchHH--HHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCCCCCcch
Q 048578 21 HKNSNTATKSHHHLPLLQKCTHLVQF--KQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIINPSTFA 98 (519)
Q Consensus 21 ~~~~~~~p~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 98 (519)
+...|+.|+..||.+++..++..++. ..++..|.-..++-+...++.++...... ++.+.+. .|...+
T Consensus 16 ~e~~gi~PnRvtyqsLiarYc~~gdieaatif~fm~~ksLpv~e~vf~~lv~sh~~A---nd~Enpk-------ep~aDt 85 (1088)
T KOG4318|consen 16 HEISGILPNRVTYQSLIARYCTKGDIEAATIFPFMEIKSLPVREGVFRGLVASHKEA---NDAENPK-------EPLADT 85 (1088)
T ss_pred HHHhcCCCchhhHHHHHHHHcccCCCccccchhhhhcccccccchhHHHHHhccccc---ccccCCC-------CCchhH
Confidence 44578888888888888887766665 33778887777777788888888776666 6665554 688899
Q ss_pred HHHHHHHHHhcCChhHHHHHHHH-H---Hh----CCCCCCcchHHHHHHHHcCccc----------hHHHHHHHHHhCCC
Q 048578 99 FNTVIRGYAEAGLGHRGIQLYTQ-M---IG----NGLDPDSFTYPILLKACGDLRQ----------VKGVHSLVVKSKDF 160 (519)
Q Consensus 99 ~~~ll~~~~~~g~~~~a~~~~~~-m---~~----~g~~p~~~~~~~ll~~~~~~~~----------~~~~~~~~~~~~~~ 160 (519)
|..++.+|.+.||... ++..++ | .. .|+.--..-+-..+.++...-. .+..+....+....
T Consensus 86 yt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~ 164 (1088)
T KOG4318|consen 86 YTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAK 164 (1088)
T ss_pred HHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999754 222222 2 11 1221111111111122211111 23333333332212
Q ss_pred CCchhHHHH---HHHHHHh-cCChHHHHHHHhcCCC-CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 048578 161 NSVIHSLTR---LITFYCN-FGDVKSAQLLFDQMTE-KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVS 235 (519)
Q Consensus 161 ~~~~~~~~~---l~~~~~~-~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 235 (519)
.|....++. +++-+.. ...+++-..+.....+ +++.+|..++.+-...|+.+.|..++.+|++.|++.+.+-|..
T Consensus 165 ~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwp 244 (1088)
T KOG4318|consen 165 VPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWP 244 (1088)
T ss_pred CCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchh
Confidence 222111111 1222211 2234444444444444 8899999999999999999999999999999999988887777
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHH-----------HhhcCC-----------
Q 048578 236 VLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRV-----------FKIVLE----------- 293 (519)
Q Consensus 236 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-----------~~~~~~----------- 293 (519)
++-+ .++...++.++..|...|+.|+..|+...+-.+...|....+... +..+..
T Consensus 245 Ll~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~n 321 (1088)
T KOG4318|consen 245 LLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQN 321 (1088)
T ss_pred hhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHH
Confidence 7755 778888888889999999999888887666555553332211110 000000
Q ss_pred ------------------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCCH-HHHH-----------------
Q 048578 294 ------------------KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMS--GIKPDD-VTLI----------------- 335 (519)
Q Consensus 294 ------------------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--g~~p~~-~~~~----------------- 335 (519)
.....|...+. ....|.-++.+++...|..- ...++. ..|.
T Consensus 322 l~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~ 400 (1088)
T KOG4318|consen 322 LRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSR 400 (1088)
T ss_pred HHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHH
Confidence 00111221111 11133333333333222110 001100 0111
Q ss_pred ---------------------------------------------------------------HHHHHHhccCcHHHHHH
Q 048578 336 ---------------------------------------------------------------AVLTACSHAGLIEKGKE 352 (519)
Q Consensus 336 ---------------------------------------------------------------~l~~~~~~~g~~~~a~~ 352 (519)
.++..|++.-+..++..
T Consensus 401 i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~ 480 (1088)
T KOG4318|consen 401 IYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILC 480 (1088)
T ss_pred HHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222222222222222
Q ss_pred HHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-----CCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHH
Q 048578 353 IFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-----PMEPNAVLWGSLLTACASADDGANVELAEIAMER 427 (519)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-----~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~ 427 (519)
.-++... . .-...|..||+.++.....+.|..+.++. .+..+..-+..+.+...+ .+....+..++++
T Consensus 481 ~~ekye~-~---lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r---~~~l~dl~tiL~e 553 (1088)
T KOG4318|consen 481 DEEKYED-L---LFAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQR---LAILYDLSTILYE 553 (1088)
T ss_pred HHHHHHH-H---HhhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHH---hHHHHHHHHHHhh
Confidence 2222211 0 11245778888888999999999998888 344566677888888888 8888999999998
Q ss_pred HHhhC---CCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcc
Q 048578 428 LIKLE---PFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVK 469 (519)
Q Consensus 428 ~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 469 (519)
+.+.- |.....+..+.......|+.+.-.++++-+...|+.-
T Consensus 554 ~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 554 DKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred hhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 88733 3334566677777888899998888888888888764
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.4e-09 Score=99.61 Aligned_cols=218 Identities=13% Similarity=0.051 Sum_probs=173.9
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHH
Q 048578 205 HVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEA 284 (519)
Q Consensus 205 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 284 (519)
+.-.|+.-.|..-|+..++....++. .|..+..+|....+.++....|+...+.+ +.++.+|..-..++.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 45668899999999999887543333 27777788999999999999999999987 67788888888888889999999
Q ss_pred HHHHhhcCCCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhc
Q 048578 285 LRVFKIVLEKN---VCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDY 361 (519)
Q Consensus 285 ~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 361 (519)
..-|++.+.-+ ...|-.+.-+..+.+++++++..|++.++. ++--...|+.....+...++++.|.+.|+...+
T Consensus 414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~-- 490 (606)
T KOG0547|consen 414 IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE-- 490 (606)
T ss_pred HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--
Confidence 99999997754 445555666667889999999999999875 444556999999999999999999999999876
Q ss_pred CCCCC---------hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHccccCCCCHHHHHHHHHHHHh
Q 048578 362 KVEPN---------VKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPN-AVLWGSLLTACASADDGANVELAEIAMERLIK 430 (519)
Q Consensus 362 ~~~~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~ 430 (519)
+.|+ +..--.++..- -.+++..|.+++.+. .+.|. ...+..|...-.. .|+.++|+++|++...
T Consensus 491 -LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ---~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 491 -LEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQ---RGKIDEAIELFEKSAQ 565 (606)
T ss_pred -hccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHH
Confidence 2232 11222222222 348999999999998 77784 5688889888888 9999999999999887
Q ss_pred hC
Q 048578 431 LE 432 (519)
Q Consensus 431 ~~ 432 (519)
+.
T Consensus 566 lA 567 (606)
T KOG0547|consen 566 LA 567 (606)
T ss_pred HH
Confidence 64
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.3e-10 Score=113.46 Aligned_cols=261 Identities=15% Similarity=0.155 Sum_probs=189.9
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC
Q 048578 216 DLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKN 295 (519)
Q Consensus 216 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 295 (519)
.++-.+...|+.|+.+||..+|.-||..|+.+.|. +|..|.-...+.+..+++.++......++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45667888899999999999999999999999999 9999999999999999999999999999877665 678
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHH
Q 048578 296 VCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVD 375 (519)
Q Consensus 296 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 375 (519)
..+|..|..+|..+||... .+..++ -...+...+...|....-..++..+.-..+.-||..+ .+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHH
Confidence 8999999999999999876 233332 2334455667777777777777665332345566544 566
Q ss_pred HHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHH
Q 048578 376 LLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDA 455 (519)
Q Consensus 376 ~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 455 (519)
.....|-++.+++++..++.-.....+..+++-+... ...+++-..+.+...+ +| ++.+|..+...-..+|+.+.|
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~--ntpvekLl~~cksl~e-~~-~s~~l~a~l~~alaag~~d~A 223 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVD--NTPVEKLLNMCKSLVE-AP-TSETLHAVLKRALAAGDVDGA 223 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccC--CchHHHHHHHHHHhhc-CC-ChHHHHHHHHHHHhcCchhhH
Confidence 6777888999999998883222111222245555551 2334444444443333 34 588999999999999999999
Q ss_pred HHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCCChhHHHHHHHHHHHHHHhcccCCCC
Q 048578 456 GKMRRLMKERNIVKNPGCSVIEINDVVHEFMVGDGRHPCSEEIYSMLEYVAISLREECYAARM 518 (519)
Q Consensus 456 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 518 (519)
..++..|+++|++.++..+|..+ .| .++.+. ++.+..-|...|..|+.
T Consensus 224 k~ll~emke~gfpir~HyFwpLl--------~g---~~~~q~----~e~vlrgmqe~gv~p~s 271 (1088)
T KOG4318|consen 224 KNLLYEMKEKGFPIRAHYFWPLL--------LG---INAAQV----FEFVLRGMQEKGVQPGS 271 (1088)
T ss_pred HHHHHHHHHcCCCcccccchhhh--------hc---CccchH----HHHHHHHHHHhcCCCCc
Confidence 99999999999999999988433 33 223333 33344445788888874
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.2e-08 Score=88.27 Aligned_cols=267 Identities=10% Similarity=-0.032 Sum_probs=184.6
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCchhH---HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 048578 160 FNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVT---WTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSV 236 (519)
Q Consensus 160 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 236 (519)
++.+......+..++...|+.++|...|++...-|+.+ .....-.+.+.|+.++...+...+.... .-+...|..-
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 66677888888888888888888888888776544332 2222334567788887777777765431 1222333333
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChH
Q 048578 237 LSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGE 313 (519)
Q Consensus 237 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~ 313 (519)
+......++++.|..+-++..+.+ +.+...+-.-..++...|+.++|.-.|+.... -+...|.-|+.+|...|++.
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHH
Confidence 334445667778887777777654 34445555556677788888888888877643 36778888888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHH-HHHh-ccCcHHHHHHHHHHcHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHH
Q 048578 314 EAVKMFWQMQMSGIKPDDVTLIAVL-TACS-HAGLIEKGKEIFYNMRRDYKVEPN-VKHYGCLVDLLCRARLLDEAYEVI 390 (519)
Q Consensus 314 ~a~~~~~~m~~~g~~p~~~~~~~l~-~~~~-~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~ 390 (519)
+|.-.-+...+. +..+..+...+. ..|. ...--++|.+++++..+ +.|+ ....+.+...+...|..++++.++
T Consensus 386 EA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 386 EANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred HHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHH
Confidence 888776665543 244555555552 2222 23345678888877765 3444 455667778888888899999888
Q ss_pred HhC-CCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCC
Q 048578 391 RNM-PMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFN 435 (519)
Q Consensus 391 ~~~-~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (519)
++. ...||....+.|.+.+.. .+.+++|...|..+++++|.|
T Consensus 462 e~~L~~~~D~~LH~~Lgd~~~A---~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 462 EKHLIIFPDVNLHNHLGDIMRA---QNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred HHHHhhccccHHHHHHHHHHHH---hhhHHHHHHHHHHHHhcCccc
Confidence 887 667888888888888888 888899999999999988886
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=2e-09 Score=108.17 Aligned_cols=262 Identities=13% Similarity=-0.004 Sum_probs=187.1
Q ss_pred CchhHHHHHHHHHHH-----cCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHh---------ccCChHHHHHHHHHHH
Q 048578 193 KNVVTWTAMINGHVK-----QKNYREGIDLFRKMRDSGVEVN-ELTLVSVLSACA---------NLGASELGKWVHEFVN 257 (519)
Q Consensus 193 ~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~ 257 (519)
.+...|...+.+-.. .+.+++|..+|++..+. .|+ ...+..+..++. ..+++++|...++++.
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 345556666665322 23467999999999876 444 445555544433 2345789999999999
Q ss_pred HcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-H
Q 048578 258 KNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLE--K-NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDV-T 333 (519)
Q Consensus 258 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~ 333 (519)
+.+ +.+...+..+..++...|++++|...|++..+ | +...+..+...+...|++++|...+++..+. .|+.. .
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~ 408 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAA 408 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhh
Confidence 886 66778888899999999999999999999865 3 4567888889999999999999999999885 45432 3
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHcHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHH-HHHHHc
Q 048578 334 LIAVLTACSHAGLIEKGKEIFYNMRRDYKVEP-NVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPNAVLWGS-LLTACA 410 (519)
Q Consensus 334 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~~~~~-ll~~~~ 410 (519)
+..++..+...|++++|...++++.+. .+| ++..+..+..++...|+.++|...++++ ...|+...... +...+.
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHh
Confidence 344455567789999999999998762 234 4556777889999999999999999988 55666554444 444456
Q ss_pred cccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 411 SADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
. .| +.|...++++.+..-..+.....+..+|.-.|+-+.+... +++.+.+.
T Consensus 487 ~---~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 487 Q---NS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred c---cH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccch
Confidence 6 45 4777777777664422222223377777778887777666 88876654
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.1e-08 Score=99.14 Aligned_cols=401 Identities=13% Similarity=0.065 Sum_probs=254.3
Q ss_pred HHHHhcCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 048578 52 QIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIIN---PSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLD 128 (519)
Q Consensus 52 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 128 (519)
++.-..+..++.+|..|.-+...+ |+++.+-+.|++... .....|+.+-..+...|.-..|+.+++.-....-.
T Consensus 313 k~r~~~~qnd~ai~d~Lt~al~~~---g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ 389 (799)
T KOG4162|consen 313 KLRLKKFQNDAAIFDHLTFALSRC---GQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ 389 (799)
T ss_pred HHHHhhhcchHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccC
Confidence 333345667889999998889999 999999999998854 45567899999999999999999999887765433
Q ss_pred CCcc-hHHHHHHHHcCc-cchHHHHHHHHHhCC------CCCchhHHHHHHHHHHhc-----------CChHHHHHHHhc
Q 048578 129 PDSF-TYPILLKACGDL-RQVKGVHSLVVKSKD------FNSVIHSLTRLITFYCNF-----------GDVKSAQLLFDQ 189 (519)
Q Consensus 129 p~~~-~~~~ll~~~~~~-~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~ 189 (519)
|+.. .+-..-+.|... +.+++..++..+.-+ -......|..+.-+|... ....++.+.+++
T Consensus 390 ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~ 469 (799)
T KOG4162|consen 390 PSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEE 469 (799)
T ss_pred CCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHH
Confidence 5444 344444445433 335555544433210 112233344444444322 123455666666
Q ss_pred CCC---CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchh
Q 048578 190 MTE---KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDK 266 (519)
Q Consensus 190 ~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 266 (519)
..+ .|+...--+.--|+..++++.|.+..++..+.+-..+...|..+.-.+...+++..|+.+.+.....- +.|-.
T Consensus 470 av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~ 548 (799)
T KOG4162|consen 470 AVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHV 548 (799)
T ss_pred HHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhh
Confidence 644 23322223344467778899999999988887667788888888888888889999988887765431 11111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcC-----------------------------C---CChhhHHHHHHHHH---HcCC
Q 048578 267 LGAALTDMYAKCGYIEEALRVFKIVL-----------------------------E---KNVCTWNSIIGGLA---IHGC 311 (519)
Q Consensus 267 ~~~~l~~~~~~~g~~~~a~~~~~~~~-----------------------------~---~~~~~~~~l~~~~~---~~g~ 311 (519)
....-+..-..-++.++++.....+. + ....++..+..-.. +.-.
T Consensus 549 l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~ 628 (799)
T KOG4162|consen 549 LMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAG 628 (799)
T ss_pred hchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcc
Confidence 11111111122334444333222110 0 01112222211111 0001
Q ss_pred hHHHHHHHHHHHHCCCC--CCH------HHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCCh
Q 048578 312 GEEAVKMFWQMQMSGIK--PDD------VTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLL 383 (519)
Q Consensus 312 ~~~a~~~~~~m~~~g~~--p~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 383 (519)
++.. +...-+. |+. ..|......+.+.+..++|...+.+..+ ..+-....|......+...|++
T Consensus 629 se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~ 700 (799)
T KOG4162|consen 629 SELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQL 700 (799)
T ss_pred cccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhh
Confidence 1111 1111111 221 2344556667888889999988888876 3445566777788889999999
Q ss_pred HHHHHHHHhC-CCCCCH-HHHHHHHHHHccccCCCCHHHHHH--HHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHH
Q 048578 384 DEAYEVIRNM-PMEPNA-VLWGSLLTACASADDGANVELAEI--AMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMR 459 (519)
Q Consensus 384 ~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~~~~~~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 459 (519)
++|.+.|... .+.|+. .+..++...+.. .|+..-|.. ++..+.+.+|.++.+|..++.++.+.|+.++|.+.|
T Consensus 701 ~EA~~af~~Al~ldP~hv~s~~Ala~~lle---~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf 777 (799)
T KOG4162|consen 701 EEAKEAFLVALALDPDHVPSMTALAELLLE---LGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECF 777 (799)
T ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHH---hCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHH
Confidence 9999999888 778865 477778888888 666666666 999999999999999999999999999999999999
Q ss_pred HHHHhCCC
Q 048578 460 RLMKERNI 467 (519)
Q Consensus 460 ~~m~~~~~ 467 (519)
....+...
T Consensus 778 ~aa~qLe~ 785 (799)
T KOG4162|consen 778 QAALQLEE 785 (799)
T ss_pred HHHHhhcc
Confidence 98876544
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.4e-12 Score=81.71 Aligned_cols=50 Identities=36% Similarity=0.730 Sum_probs=48.5
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcC
Q 048578 94 PSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGD 143 (519)
Q Consensus 94 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 143 (519)
||+.+||.+|.+|++.|++++|+++|++|.+.|++||..||++++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999875
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.2e-10 Score=98.41 Aligned_cols=227 Identities=11% Similarity=0.013 Sum_probs=165.6
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHHcC
Q 048578 234 VSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLE--K-NVCTWNSIIGGLAIHG 310 (519)
Q Consensus 234 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g 310 (519)
+.+.++|.+.|.+..|++.++..++. .|.+.+|..|-.+|.+..+...|+.++.+..+ | |+....-+...+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 34566667777777777777666664 35556666677777777777777777766654 2 3333344556666777
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 048578 311 CGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVI 390 (519)
Q Consensus 311 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 390 (519)
+.++|.++++...+.. ..+......+...|.-.++.+.|+.+++++.+ .|+ .++..|+.+.-+|.-.+++|-++.-|
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLq-mG~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQ-MGA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHH-hcC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 7788888887776643 34445666666677777788888888888877 455 45667777777777888888887777
Q ss_pred HhC---CCCCC--HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048578 391 RNM---PMEPN--AVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKER 465 (519)
Q Consensus 391 ~~~---~~~p~--~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 465 (519)
++. .-.|+ ..+|..+-..... .||+..|.+.|+-++..+|++..+++.|+-.-.+.|++++|..++......
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~---iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVT---IGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEe---ccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 766 22233 3467777777777 999999999999999999999999999999999999999999999988765
Q ss_pred CCc
Q 048578 466 NIV 468 (519)
Q Consensus 466 ~~~ 468 (519)
...
T Consensus 459 ~P~ 461 (478)
T KOG1129|consen 459 MPD 461 (478)
T ss_pred Ccc
Confidence 544
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-09 Score=104.91 Aligned_cols=230 Identities=17% Similarity=0.140 Sum_probs=167.2
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHc-------CCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-------C--
Q 048578 231 LTLVSVLSACANLGASELGKWVHEFVNKN-------CIILNDKLGAALTDMYAKCGYIEEALRVFKIVLE-------K-- 294 (519)
Q Consensus 231 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~-- 294 (519)
.+...+...|...|+++.|..+++...+. ..+.=....+.+...|...+++++|..+|+++.. +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45555777777788888887777776654 1122223344577788888888888888887732 1
Q ss_pred --ChhhHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCC-CCHH-HHHHHHHHHhccCcHHHHHHHHHHcHHhcC--C
Q 048578 295 --NVCTWNSIIGGLAIHGCGEEAVKMFWQMQM-----SGIK-PDDV-TLIAVLTACSHAGLIEKGKEIFYNMRRDYK--V 363 (519)
Q Consensus 295 --~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~-p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~ 363 (519)
-..+++.|..+|.+.|++++|...+++..+ .|.. |... .++.+...|+..+++++|..++++..+.+. .
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 134677778888999999888887777532 1222 2222 567778889999999999999988766332 1
Q ss_pred CC----ChhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-HHHHHHHHHHHccccCCCCHHHHHHHHHHHH
Q 048578 364 EP----NVKHYGCLVDLLCRARLLDEAYEVIRNM---------PMEPN-AVLWGSLLTACASADDGANVELAEIAMERLI 429 (519)
Q Consensus 364 ~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~ 429 (519)
.+ -..+++.|...|...|++++|.++++++ +..+. ...++.+...|.+ .+++++|.++|.+..
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~---~k~~~~a~~l~~~~~ 436 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEE---LKKYEEAEQLFEEAK 436 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHH---hcccchHHHHHHHHH
Confidence 22 2467899999999999999999999887 11222 4467778888888 888998988888876
Q ss_pred h----hCCC---CCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 048578 430 K----LEPF---NDGNYVLMSNIYAAKAQWDDAGKMRRLMK 463 (519)
Q Consensus 430 ~----~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (519)
. .+|+ ...+|..|+.+|.+.|++++|.++.+.+.
T Consensus 437 ~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 437 DIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4 3444 45678899999999999999999988875
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.6e-09 Score=96.65 Aligned_cols=193 Identities=10% Similarity=0.007 Sum_probs=108.2
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHH
Q 048578 195 VVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDM 274 (519)
Q Consensus 195 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 274 (519)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|+++.|...++...+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 4567777778888888888888888776653 2245566666667777777777777777776654 3344455555666
Q ss_pred HHhcCCHHHHHHHHhhcCCC-----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHH
Q 048578 275 YAKCGYIEEALRVFKIVLEK-----NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEK 349 (519)
Q Consensus 275 ~~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 349 (519)
+...|++++|.+.+++.... ....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 66666666666666555331 12234444445555555555555555554432 1223344445555555555555
Q ss_pred HHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 048578 350 GKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRN 392 (519)
Q Consensus 350 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 392 (519)
|...+++..+. .+.+...+..++..+...|+.++|..+.+.
T Consensus 188 A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 188 ARAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 55555555442 222333444444444455555555444433
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.1e-11 Score=79.84 Aligned_cols=50 Identities=24% Similarity=0.546 Sum_probs=47.2
Q ss_pred CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 048578 193 KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACAN 242 (519)
Q Consensus 193 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 242 (519)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999875
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.2e-10 Score=97.71 Aligned_cols=228 Identities=13% Similarity=0.051 Sum_probs=194.9
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhc
Q 048578 199 TAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKC 278 (519)
Q Consensus 199 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 278 (519)
+.+.++|.+.|.+.+|.+.|+.-.+. .|-+.||..+-++|.+..+++.|..++.+-++.- |.+.....-+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 67889999999999999999998876 5677789889999999999999999999888763 66666677788899999
Q ss_pred CCHHHHHHHHhhcCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 048578 279 GYIEEALRVFKIVLEK---NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFY 355 (519)
Q Consensus 279 g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 355 (519)
++.++|.++|+...+. ++.+...+...|...++++-|+.+++++...|+ -+...|+.+.-+|.-.++++-++.-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 9999999999988663 566777777888899999999999999999994 467789999999999999999999999
Q ss_pred HcHHhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhh
Q 048578 356 NMRRDYKVEPN--VKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKL 431 (519)
Q Consensus 356 ~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~ 431 (519)
+.... --.|+ ...|..+.......|++.-|.+.|+-. .-.| +...++.|.-.-.+ .|+++.|..++..+.+.
T Consensus 383 RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r---~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 383 RALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAAR---SGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhh---cCchHHHHHHHHHhhhh
Confidence 88772 33343 467888999999999999999999887 3344 56688888877888 99999999999999999
Q ss_pred CCC
Q 048578 432 EPF 434 (519)
Q Consensus 432 ~p~ 434 (519)
.|+
T Consensus 459 ~P~ 461 (478)
T KOG1129|consen 459 MPD 461 (478)
T ss_pred Ccc
Confidence 887
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.9e-07 Score=87.51 Aligned_cols=398 Identities=12% Similarity=0.087 Sum_probs=256.2
Q ss_pred cCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC------CCCC
Q 048578 57 SFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNG------LDPD 130 (519)
Q Consensus 57 ~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g------~~p~ 130 (519)
.+.....+|.-.++..... |-++-+..++++..+-++..-+-.|..+++.+++++|-+.+....... .+-+
T Consensus 133 pvtqH~rIW~lyl~Fv~~~---~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn 209 (835)
T KOG2047|consen 133 PVTQHDRIWDLYLKFVESH---GLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSN 209 (835)
T ss_pred chHhhccchHHHHHHHHhC---CChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccch
Confidence 3444455677777777777 888899999999888788778889999999999999999998887542 2334
Q ss_pred cchHHHHHHHHcCccc------hHHHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--CchhHHHHHH
Q 048578 131 SFTYPILLKACGDLRQ------VKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTE--KNVVTWTAMI 202 (519)
Q Consensus 131 ~~~~~~ll~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li 202 (519)
...|..+....++..+ ++.+.......- -+.-...+++|.+.|.+.|++++|..+|++..+ ..+.-|..+.
T Consensus 210 ~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rf-tDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~if 288 (835)
T KOG2047|consen 210 HQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRF-TDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIF 288 (835)
T ss_pred hhHHHHHHHHHHhCcchhcccCHHHHHHhhcccC-cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHH
Confidence 4566666666555544 333333332221 111245789999999999999999999998765 2333344444
Q ss_pred HHHHHcC----------------------ChhHHHHHHHHHHhCCC-----------CCCHHHHHHHHHHHhccCChHHH
Q 048578 203 NGHVKQK----------------------NYREGIDLFRKMRDSGV-----------EVNELTLVSVLSACANLGASELG 249 (519)
Q Consensus 203 ~~~~~~~----------------------~~~~a~~~~~~m~~~~~-----------~~~~~~~~~ll~~~~~~~~~~~a 249 (519)
++|++-. +++-.+.-|+.+...+. +-+..+|..-. -...|+..+.
T Consensus 289 d~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~ 366 (835)
T KOG2047|consen 289 DAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQ 366 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhh--hhhcCChHHH
Confidence 4443321 12333344444444321 01112222211 1223455566
Q ss_pred HHHHHHHHHcCCC-----cchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh-------hhHHHHHHHHHHcCChHHHHH
Q 048578 250 KWVHEFVNKNCII-----LNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNV-------CTWNSIIGGLAIHGCGEEAVK 317 (519)
Q Consensus 250 ~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~ 317 (519)
...+.++.+.--| .....+..+...|-..|+++.|..+|++..+-+- .+|..-...=.++.+++.|++
T Consensus 367 i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~ 446 (835)
T KOG2047|consen 367 INTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALK 446 (835)
T ss_pred HHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 6666666553211 1234678889999999999999999999977543 345555555567889999999
Q ss_pred HHHHHHHCC-----------CCCC------HHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhc
Q 048578 318 MFWQMQMSG-----------IKPD------DVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRA 380 (519)
Q Consensus 318 ~~~~m~~~g-----------~~p~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 380 (519)
++++....- .++. ...|...+..--..|-++....+++++..- .+ .++.........+...
T Consensus 447 lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidL-ri-aTPqii~NyAmfLEeh 524 (835)
T KOG2047|consen 447 LMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDL-RI-ATPQIIINYAMFLEEH 524 (835)
T ss_pred HHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-hc-CCHHHHHHHHHHHHhh
Confidence 988865321 1111 123444455555667888888899988873 33 2333333444555667
Q ss_pred CChHHHHHHHHhC-CC-C-CCHH-HHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCC--CchHHHHHHHHHhcCCchH
Q 048578 381 RLLDEAYEVIRNM-PM-E-PNAV-LWGSLLTACASADDGANVELAEIAMERLIKLEPFN--DGNYVLMSNIYAAKAQWDD 454 (519)
Q Consensus 381 ~~~~~A~~~~~~~-~~-~-p~~~-~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~ 454 (519)
.-++++.+++++- ++ + |+.. .|+..+.-+...-.....+.|..+|+++++.-|+. ...|...+..-.+.|.-..
T Consensus 525 ~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~ 604 (835)
T KOG2047|consen 525 KYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARH 604 (835)
T ss_pred HHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHH
Confidence 7789999999987 22 2 4443 67777766555333668999999999999965642 2455556666667788889
Q ss_pred HHHHHHHH
Q 048578 455 AGKMRRLM 462 (519)
Q Consensus 455 A~~~~~~m 462 (519)
|++++++.
T Consensus 605 amsiyera 612 (835)
T KOG2047|consen 605 AMSIYERA 612 (835)
T ss_pred HHHHHHHH
Confidence 99999885
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.6e-09 Score=108.90 Aligned_cols=243 Identities=12% Similarity=0.053 Sum_probs=174.1
Q ss_pred CChHHHHHHHhcCCC--C-chhHHHHHHHHHHH---------cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 048578 178 GDVKSAQLLFDQMTE--K-NVVTWTAMINGHVK---------QKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGA 245 (519)
Q Consensus 178 g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 245 (519)
+++++|...|++..+ | +...|..+..++.. .+++++|...+++..+.+ +-+...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 446789999998876 3 34456666555442 345889999999998874 3356677778888889999
Q ss_pred hHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh---hhHHHHHHHHHHcCChHHHHHHHHHH
Q 048578 246 SELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNV---CTWNSIIGGLAIHGCGEEAVKMFWQM 322 (519)
Q Consensus 246 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m 322 (519)
+++|...++++.+.+ |.+...+..+..++...|++++|...+++..+.++ ..+..++..+...|++++|...+++.
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence 999999999999986 56677888899999999999999999999865333 23344455577789999999999998
Q ss_pred HHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCC
Q 048578 323 QMSGIKPD-DVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM----PMEP 397 (519)
Q Consensus 323 ~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~p 397 (519)
.+.. .|+ ...+..+..++...|+.++|...+.++.. ..+.+....+.+...|...| ++|...++.+ ...|
T Consensus 433 l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 433 RSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEIST--QEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh--ccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 7653 354 44567778888899999999999998866 22233444556666777777 4676666555 3344
Q ss_pred CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCC
Q 048578 398 NAVLWGSLLTACASADDGANVELAEIAMERLIKLEP 433 (519)
Q Consensus 398 ~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p 433 (519)
....+..++ +.- .|+-+.+..+ +++.+.+.
T Consensus 508 ~~~~~~~~~--~~~---~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 508 NNPGLLPLV--LVA---HGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred cCchHHHHH--HHH---HhhhHHHHHH-HHhhccch
Confidence 444444443 333 5566666655 77766543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.1e-07 Score=87.68 Aligned_cols=417 Identities=12% Similarity=0.056 Sum_probs=241.2
Q ss_pred CcccHHHHHHhccCchHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 048578 29 KSHHHLPLLQKCTHLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIINPSTFAFNTVIRGYAE 108 (519)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~ 108 (519)
+.+.+-.-+-+....+.++..+..+...+.......+ .+=++|+.. +.+..++|+..++...+.+..+...-...+.+
T Consensus 45 d~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~-~fEKAYc~Y-rlnk~Dealk~~~~~~~~~~~ll~L~AQvlYr 122 (652)
T KOG2376|consen 45 DEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSF-FFEKAYCEY-RLNKLDEALKTLKGLDRLDDKLLELRAQVLYR 122 (652)
T ss_pred cHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchh-hHHHHHHHH-HcccHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence 3334444444445555556666555444421111111 134556543 33788999988885555555566666788899
Q ss_pred cCChhHHHHHHHHHHhCCCCCC-cchHHHHHHHHcCccchHHHHHHHHHhCCCCC-chhHHHHHHHHHHhcCChHHHHHH
Q 048578 109 AGLGHRGIQLYTQMIGNGLDPD-SFTYPILLKACGDLRQVKGVHSLVVKSKDFNS-VIHSLTRLITFYCNFGDVKSAQLL 186 (519)
Q Consensus 109 ~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 186 (519)
.|++++|+++|..+.+.+..-- ...-..++.+- ....+ ..+......+. +-..+....-.++..|++.+|+++
T Consensus 123 l~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~----a~l~~-~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~el 197 (652)
T KOG2376|consen 123 LERYDEALDIYQHLAKNNSDDQDEERRANLLAVA----AALQV-QLLQSVPEVPEDSYELLYNTACILIENGKYNQAIEL 197 (652)
T ss_pred HhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH----HhhhH-HHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHH
Confidence 9999999999999988654321 11111222211 11111 12333331221 122233344567789999999999
Q ss_pred HhcCC--------CCch----------hHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHH----HHHHHHHHhccC
Q 048578 187 FDQMT--------EKNV----------VTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELT----LVSVLSACANLG 244 (519)
Q Consensus 187 ~~~~~--------~~~~----------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~----~~~ll~~~~~~~ 244 (519)
++... ..|. ..-..|.-++-..|+.++|..+|....+.. .+|... .|.++..-....
T Consensus 198 L~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~ 276 (652)
T KOG2376|consen 198 LEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQN 276 (652)
T ss_pred HHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccc
Confidence 98872 1111 123345567788999999999999998886 334422 222222211111
Q ss_pred ChH-HHHHHHHHHHH-----------cCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC-hhhHHHHHHHH--HHc
Q 048578 245 ASE-LGKWVHEFVNK-----------NCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKN-VCTWNSIIGGL--AIH 309 (519)
Q Consensus 245 ~~~-~a~~~~~~~~~-----------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~l~~~~--~~~ 309 (519)
-++ .+...++.... ..-......-+.++..| .+..+.+.++........ ...+.+++... ++.
T Consensus 277 ~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~ 354 (652)
T KOG2376|consen 277 YFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMDQVRELSASLPGMSPESLFPILLQEATKVRE 354 (652)
T ss_pred cCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHH
Confidence 112 11111111111 00001111112233333 355667777766665543 33444444333 223
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH--------HcHHhcCCCCChhHHHHHHHHHHhcC
Q 048578 310 GCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFY--------NMRRDYKVEPNVKHYGCLVDLLCRAR 381 (519)
Q Consensus 310 g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~ 381 (519)
..+..+.+++...-+..-.-........++.....|+++.|.+++. .+.+ .+..|. +...+...+.+.+
T Consensus 355 ~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~-~~~~P~--~V~aiv~l~~~~~ 431 (652)
T KOG2376|consen 355 KKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILE-AKHLPG--TVGAIVALYYKIK 431 (652)
T ss_pred HHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh-hccChh--HHHHHHHHHHhcc
Confidence 3577788888777654222223466677778899999999999999 5544 344554 4456777888888
Q ss_pred ChHHHHHHHHhC-----CCCCCHH----HHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCc
Q 048578 382 LLDEAYEVIRNM-----PMEPNAV----LWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQW 452 (519)
Q Consensus 382 ~~~~A~~~~~~~-----~~~p~~~----~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 452 (519)
+.+.|..++.+. .-.+... ++.-+...-.+ +|+.++|..+++++.+.+|++..+...++.+|++. +.
T Consensus 432 ~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr---~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~ 507 (652)
T KOG2376|consen 432 DNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLR---HGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DP 507 (652)
T ss_pred CCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHh---cCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CH
Confidence 877777777665 1112222 33333334445 79999999999999999999999999999999988 67
Q ss_pred hHHHHHHHHH
Q 048578 453 DDAGKMRRLM 462 (519)
Q Consensus 453 ~~A~~~~~~m 462 (519)
+.|..+-+.+
T Consensus 508 eka~~l~k~L 517 (652)
T KOG2376|consen 508 EKAESLSKKL 517 (652)
T ss_pred HHHHHHhhcC
Confidence 8888875544
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.5e-08 Score=93.25 Aligned_cols=281 Identities=13% Similarity=-0.016 Sum_probs=218.2
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC---chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 048578 160 FNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEK---NVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSV 236 (519)
Q Consensus 160 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 236 (519)
...+........+-+...+++.+..++++.+.+. ....+-.-|.++...|+..+-..+=.+|.+. .+-...+|-.+
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV 318 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV 318 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence 3445566666777788899999999999998774 3445556677888999988888888888876 34467889999
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChH
Q 048578 237 LSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGE 313 (519)
Q Consensus 237 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~ 313 (519)
..-|...|..++|+++|.+....+ +.-...|-.....|+-.|..++|...|....+ .....+.-+.--|.+.++++
T Consensus 319 g~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHH
Confidence 888888899999999999987765 33455778889999999999999999977643 22233444556688899999
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHcHHhc-CCCC----ChhHHHHHHHHHHhcCChHHHH
Q 048578 314 EAVKMFWQMQMSGIKPD-DVTLIAVLTACSHAGLIEKGKEIFYNMRRDY-KVEP----NVKHYGCLVDLLCRARLLDEAY 387 (519)
Q Consensus 314 ~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~----~~~~~~~l~~~~~~~~~~~~A~ 387 (519)
-|.++|.+... +-|+ ....+-+.-.....+.+.+|..+|+.....- .+.+ -..+++.|..+|.+.+.+++|+
T Consensus 398 LAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 398 LAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 99999998875 4555 4477777767777899999999999887411 0111 2346889999999999999999
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 048578 388 EVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYA 447 (519)
Q Consensus 388 ~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 447 (519)
..+++. ...| +..++.++.-.|.. .|+++.|...|.+++-+.|+|..+-..|..+..
T Consensus 476 ~~~q~aL~l~~k~~~~~asig~iy~l---lgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 476 DYYQKALLLSPKDASTHASIGYIYHL---LGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHH---hcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 999998 3344 77788888888888 999999999999999999998666666654443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.4e-06 Score=82.99 Aligned_cols=284 Identities=16% Similarity=0.187 Sum_probs=181.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCCc-------hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC----------C
Q 048578 166 SLTRLITFYCNFGDVKSAQLLFDQMTEKN-------VVTWTAMINGHVKQKNYREGIDLFRKMRDSGVE----------V 228 (519)
Q Consensus 166 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~----------~ 228 (519)
.|..+...|-..|+++.|..+|++..+.+ ..+|......=.+..+++.|+++++....-.-. |
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 45567777788888888888888876622 234555556666777788888877665332111 1
Q ss_pred -------CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC----CCh-
Q 048578 229 -------NELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLE----KNV- 296 (519)
Q Consensus 229 -------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~- 296 (519)
+...|...++.--..|-++....+++.+.+..+.... +.-.....+-...-++++.++|++-+. |++
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPq-ii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~ 547 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQ-IIINYAMFLEEHKYFEESFKAYERGISLFKWPNVY 547 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHH-HHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHH
Confidence 2234555555556667778888888888877643332 222233334455667888888887754 333
Q ss_pred hhHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HhccCcHHHHHHHHHHcHHhcCCCCC--hhH
Q 048578 297 CTWNSIIGGLAI---HGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTA--CSHAGLIEKGKEIFYNMRRDYKVEPN--VKH 369 (519)
Q Consensus 297 ~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~ 369 (519)
..|+..+.-+.+ ....+.|..+|++..+ |++|...-+..|+-+ =-+-|-...|+.++++... ++++. ...
T Consensus 548 diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~m 624 (835)
T KOG2047|consen 548 DIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDM 624 (835)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHH
Confidence 356665555443 2467899999999987 778776533333322 2345888889999999876 55554 357
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhC-CC-CCchHHHHHHHH
Q 048578 370 YGCLVDLLCRARLLDEAYEVIRNM-PMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLE-PF-NDGNYVLMSNIY 446 (519)
Q Consensus 370 ~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~-p~-~~~~~~~l~~~~ 446 (519)
|+..|.--...=-+....++|++. ..-|+...-...+...-.....|..+.|..++.-..+.- |. ++..|...-..-
T Consensus 625 yni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FE 704 (835)
T KOG2047|consen 625 YNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFE 704 (835)
T ss_pred HHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHH
Confidence 887776555544455556666666 445665544444433222222899999999999888875 44 677888888888
Q ss_pred HhcCCch
Q 048578 447 AAKAQWD 453 (519)
Q Consensus 447 ~~~g~~~ 453 (519)
.+.|+-+
T Consensus 705 vrHGned 711 (835)
T KOG2047|consen 705 VRHGNED 711 (835)
T ss_pred HhcCCHH
Confidence 8999833
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.5e-09 Score=98.42 Aligned_cols=115 Identities=13% Similarity=-0.054 Sum_probs=51.9
Q ss_pred CChhHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHH
Q 048578 209 KNYREGIDLFRKMRDSG-VEVN--ELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEAL 285 (519)
Q Consensus 209 ~~~~~a~~~~~~m~~~~-~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 285 (519)
+..+.++.-+.++.... ..|+ ...|......+...|+.+.|...|+...+.. +.+...++.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 44455555555554331 1111 1234444444555555555555555555443 333444444444555555555555
Q ss_pred HHHhhcCC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 048578 286 RVFKIVLE--K-NVCTWNSIIGGLAIHGCGEEAVKMFWQMQM 324 (519)
Q Consensus 286 ~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 324 (519)
..|++..+ | +..+|..+...+...|++++|.+.|++..+
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ 160 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 54444422 1 223344444444444444444444444443
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.16 E-value=9e-07 Score=84.49 Aligned_cols=404 Identities=12% Similarity=0.053 Sum_probs=246.1
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 048578 47 KQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIIN---PSTFAFNTVIRGYAEAGLGHRGIQLYTQMI 123 (519)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 123 (519)
..+.+.+++ +.+-...+....--.+... |+-++|......... .+.++|..+.-.+-...++++|++.|....
T Consensus 27 LK~~~~iL~-k~~eHgeslAmkGL~L~~l---g~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl 102 (700)
T KOG1156|consen 27 LKLIKQILK-KFPEHGESLAMKGLTLNCL---GKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNAL 102 (700)
T ss_pred HHHHHHHHH-hCCccchhHHhccchhhcc---cchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 455555555 3333334433222223344 899999998887754 566789988888888999999999999998
Q ss_pred hCCCCCCc-chHHHHHHHHcCccchHH---HHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC-----Cc
Q 048578 124 GNGLDPDS-FTYPILLKACGDLRQVKG---VHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTE-----KN 194 (519)
Q Consensus 124 ~~g~~p~~-~~~~~ll~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~ 194 (519)
.. .||. ..|.-+--.-+..++.+. ....+.+. .+.....|..++.++.-.|+...|..+++...+ ++
T Consensus 103 ~~--~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s 178 (700)
T KOG1156|consen 103 KI--EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPS 178 (700)
T ss_pred hc--CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 84 4544 345544444444444222 22222222 233455677777778888999988888877654 34
Q ss_pred hhHHHH------HHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHH-HHHHHHHhccCChHHHHHHHHHHHHcCCCcchhH
Q 048578 195 VVTWTA------MINGHVKQKNYREGIDLFRKMRDSGVEVNELTL-VSVLSACANLGASELGKWVHEFVNKNCIILNDKL 267 (519)
Q Consensus 195 ~~~~~~------li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 267 (519)
...+.- ........|.+++|++.+..-... ..|...+ ..-...+.+.+++++|..++..+...+ |.+...
T Consensus 179 ~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-Pdn~~Y 255 (700)
T KOG1156|consen 179 KEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN-PDNLDY 255 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-chhHHH
Confidence 333322 223456778888888877665433 2233222 233455778899999999999998875 444555
Q ss_pred HHHHHHHHHhcCCHHHHH-HHHhhcCCCCh--hhHHHH-HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 048578 268 GAALTDMYAKCGYIEEAL-RVFKIVLEKNV--CTWNSI-IGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSH 343 (519)
Q Consensus 268 ~~~l~~~~~~~g~~~~a~-~~~~~~~~~~~--~~~~~l-~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 343 (519)
|..+..++.+-.+.-++. .+|....+.-+ ..-..+ +.......-.+..-.++..+.+.|+++--..+.++ |-.
T Consensus 256 y~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SL---yk~ 332 (700)
T KOG1156|consen 256 YEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSL---YKD 332 (700)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHH---Hhc
Confidence 555566664333333333 56655533211 000000 11111122223445566677778866533333333 322
Q ss_pred cCcHHHHHHH---HHHcHHhcC----------CCCChhHHH--HHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHH
Q 048578 344 AGLIEKGKEI---FYNMRRDYK----------VEPNVKHYG--CLVDLLCRARLLDEAYEVIRNM-PMEPNAV-LWGSLL 406 (519)
Q Consensus 344 ~g~~~~a~~~---~~~~~~~~~----------~~~~~~~~~--~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~-~~~~ll 406 (519)
....+-..++ +.......| -+|+...|. .++..+-+.|+++.|...++.. +..|+.. .|..-.
T Consensus 333 p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~Ka 412 (700)
T KOG1156|consen 333 PEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKA 412 (700)
T ss_pred hhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHH
Confidence 2111111111 111111011 145555554 5778889999999999999988 7788766 454445
Q ss_pred HHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 407 TACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 407 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
+.+.. .|++++|..+++++.+++-.|...-..-+.-..++++.++|.++..++-+.|.
T Consensus 413 RI~kH---~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 413 RIFKH---AGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHh---cCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 56777 89999999999999999966555555788889999999999999999977775
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.4e-07 Score=91.98 Aligned_cols=286 Identities=13% Similarity=0.027 Sum_probs=193.1
Q ss_pred HHHHHHhcCChHHHHHHHhcCCC--Cchh-HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh----c
Q 048578 170 LITFYCNFGDVKSAQLLFDQMTE--KNVV-TWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACA----N 242 (519)
Q Consensus 170 l~~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~----~ 242 (519)
...++...|++++|+..++.-.. .|.. ........+.+.|+.++|..+|..+.+.+ |+...|-..+..+. .
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence 34567888999999999987655 4544 45667788999999999999999999874 56666555555444 1
Q ss_pred --cCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHH-HHHHHHhhcCCCCh-hhHHHHHHHHHHcCChHHHHHH
Q 048578 243 --LGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIE-EALRVFKIVLEKNV-CTWNSIIGGLAIHGCGEEAVKM 318 (519)
Q Consensus 243 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~ 318 (519)
..+.+....+++.+...- |.......+.-.+.....+. .+...+..+..+++ .+|+.+-..|....+..-..++
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHH
Confidence 124566777888776643 22222222222222222332 23334444455554 4566666666655555555566
Q ss_pred HHHHHHC----C----------CCCCH--HHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCC
Q 048578 319 FWQMQMS----G----------IKPDD--VTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARL 382 (519)
Q Consensus 319 ~~~m~~~----g----------~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 382 (519)
+...... | -.|+. .++..+.+.|...|++++|++++++..+ .-+..+..|..-.+.|-+.|+
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~--htPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE--HTPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHCCC
Confidence 6655432 1 12343 3567778889999999999999999988 233347788899999999999
Q ss_pred hHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCC-Cc--------hHHHHHHHHHhcCC
Q 048578 383 LDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFN-DG--------NYVLMSNIYAAKAQ 451 (519)
Q Consensus 383 ~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~-~~--------~~~~l~~~~~~~g~ 451 (519)
+.+|.+.++.. .+.+ |...-+-....+.+ .|++++|.+.+....+.+-+. .. .....+.+|.+.|+
T Consensus 244 ~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR---a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLADRYINSKCAKYLLR---AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred HHHHHHHHHHHHhCChhhHHHHHHHHHHHHH---CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999998 5555 45555566667788 899999999998876655211 11 22467889999999
Q ss_pred chHHHHHHHHHHh
Q 048578 452 WDDAGKMRRLMKE 464 (519)
Q Consensus 452 ~~~A~~~~~~m~~ 464 (519)
+..|++.|..+.+
T Consensus 321 ~~~ALk~~~~v~k 333 (517)
T PF12569_consen 321 YGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHH
Confidence 9999997776654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.2e-08 Score=82.26 Aligned_cols=199 Identities=15% Similarity=0.021 Sum_probs=103.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHh
Q 048578 198 WTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAK 277 (519)
Q Consensus 198 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 277 (519)
...|.-.|...|+...|.+-+++.++.. +-+..++..+...|.+.|+.+.|.+.|++..+.. +-
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~-------------- 101 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PN-------------- 101 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CC--------------
Confidence 3444445555555555555555555442 1123344444444444455555544444444432 22
Q ss_pred cCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHH
Q 048578 278 CGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPD-DVTLIAVLTACSHAGLIEKGKEIFYN 356 (519)
Q Consensus 278 ~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 356 (519)
+....|.....+|..|++++|...|++....-.-|. ..||..+.-+..+.|+.+.|...|++
T Consensus 102 -----------------~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~r 164 (250)
T COG3063 102 -----------------NGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKR 164 (250)
T ss_pred -----------------ccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHH
Confidence 344455555555566666666666666554322222 23555555555666666666666666
Q ss_pred cHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC
Q 048578 357 MRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM--PMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPF 434 (519)
Q Consensus 357 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (519)
..+ ..+-...+...+.+.....|++..|..+++.. +..++..+....|..... .|+.+.+.++=.++.+.-|.
T Consensus 165 aL~--~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~---~gd~~~a~~Y~~qL~r~fP~ 239 (250)
T COG3063 165 ALE--LDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKR---LGDRAAAQRYQAQLQRLFPY 239 (250)
T ss_pred HHH--hCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHH---hccHHHHHHHHHHHHHhCCC
Confidence 555 22223344455556666666666666666555 223555555555555555 66666666555555555555
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.5e-07 Score=81.79 Aligned_cols=265 Identities=10% Similarity=0.004 Sum_probs=179.3
Q ss_pred CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHH
Q 048578 193 KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNEL-TLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAAL 271 (519)
Q Consensus 193 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 271 (519)
.|+.....+.+++...|+.++|+..|++.... .|+.. ......-.+.+.|+.+....+...+.... ..+...|-.-
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 46667778888888888888888888887654 33322 22222223456777777777766666543 1222233333
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCChh---hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH
Q 048578 272 TDMYAKCGYIEEALRVFKIVLEKNVC---TWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIE 348 (519)
Q Consensus 272 ~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 348 (519)
.......++++.|+.+-++.+..+.. .+-.-...+...|++++|.-.|+..+... +-+...|..|+.+|...|.+.
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHH
Confidence 44455667888888888877665443 33333466778888888888888877632 345568888888888888888
Q ss_pred HHHHHHHHcHHhcCCCCChhHHHHHH-HHHH-hcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHccccCCCCHHHHHHH
Q 048578 349 KGKEIFYNMRRDYKVEPNVKHYGCLV-DLLC-RARLLDEAYEVIRNM-PMEPNAV-LWGSLLTACASADDGANVELAEIA 424 (519)
Q Consensus 349 ~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~~~~~~~~~a~~~ 424 (519)
+|.-.-....+ -++.+..+...+. ..+. ...--++|..++++. .++|+-. ..+.+...|.. .|..+.++.+
T Consensus 386 EA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~---Eg~~~D~i~L 460 (564)
T KOG1174|consen 386 EANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQV---EGPTKDIIKL 460 (564)
T ss_pred HHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHh---hCccchHHHH
Confidence 88877777666 3444555655442 2222 233456788888877 7777643 55666666777 7788888888
Q ss_pred HHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 425 MERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 425 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
+++.+...|+ ......|++.+...+.+.+|++.|......+.
T Consensus 461 Le~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 461 LEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred HHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence 8888888876 67888888888888888899888887765443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.1e-08 Score=95.53 Aligned_cols=259 Identities=12% Similarity=0.032 Sum_probs=186.4
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhc--
Q 048578 202 INGHVKQKNYREGIDLFRKMRDSGVEVNE-LTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKC-- 278 (519)
Q Consensus 202 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 278 (519)
...+...|++++|++.++.-... .+|. ..+......+.+.|+.++|..++..+.+.+ |.|...|..+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcc
Confidence 35568899999999999875543 4454 455566777899999999999999999998 56666777777776333
Q ss_pred ---CCHHHHHHHHhhcCCCCh--hhHHHHHHHHHHcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 048578 279 ---GYIEEALRVFKIVLEKNV--CTWNSIIGGLAIHGCG-EEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKE 352 (519)
Q Consensus 279 ---g~~~~a~~~~~~~~~~~~--~~~~~l~~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~ 352 (519)
...+...++|+++.+..+ .+...+.-.+.....+ ..+..++..+...|+++ +|..|-..|......+-...
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHH
Confidence 256777888887754322 2222222112221223 24556677778888654 55666656666666555666
Q ss_pred HHHHcHHhc-------------CCCCChh--HHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHccccCC
Q 048578 353 IFYNMRRDY-------------KVEPNVK--HYGCLVDLLCRARLLDEAYEVIRNM-PMEPNA-VLWGSLLTACASADDG 415 (519)
Q Consensus 353 ~~~~~~~~~-------------~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~~~~ 415 (519)
++....... .-+|+.. ++..+...|-..|++++|++++++. ...|+. ..|..-...+.+ .
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh---~ 241 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKH---A 241 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH---C
Confidence 666554311 1134443 3456688899999999999999987 778875 467777777888 9
Q ss_pred CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcc
Q 048578 416 ANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVK 469 (519)
Q Consensus 416 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 469 (519)
|++++|.+.++.+.++++.|..+-+-.+..+.++|+.++|.+++..+-+.+..|
T Consensus 242 G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~ 295 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDP 295 (517)
T ss_pred CCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCc
Confidence 999999999999999999988888889999999999999999999997776543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.4e-08 Score=95.97 Aligned_cols=228 Identities=16% Similarity=0.091 Sum_probs=152.7
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhC-----C-CCCCHHH-HHHHHHHHhccCChHHHHHHHHHHHHc-----C--CCcch
Q 048578 200 AMINGHVKQKNYREGIDLFRKMRDS-----G-VEVNELT-LVSVLSACANLGASELGKWVHEFVNKN-----C--IILND 265 (519)
Q Consensus 200 ~li~~~~~~~~~~~a~~~~~~m~~~-----~-~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~ 265 (519)
.+...|...|+++.|+.+++...+. | ..|...+ .+.+...|...+.+++|..+|+.+... | .+.-.
T Consensus 204 ~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va 283 (508)
T KOG1840|consen 204 NLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVA 283 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 3555666666666666666554432 1 1222222 222445566667777777777666542 1 12234
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCC----------CCh-hhHHHHHHHHHHcCChHHHHHHHHHHHHC---CCCCCH
Q 048578 266 KLGAALTDMYAKCGYIEEALRVFKIVLE----------KNV-CTWNSIIGGLAIHGCGEEAVKMFWQMQMS---GIKPDD 331 (519)
Q Consensus 266 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~----------~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~---g~~p~~ 331 (519)
.+++.|..+|.+.|++++|...+++..+ +.+ ..++.+...+...+++++|..+++...+. -..++.
T Consensus 284 ~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~ 363 (508)
T KOG1840|consen 284 ATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDN 363 (508)
T ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccc
Confidence 4566666777777877777777665522 122 23566777888889999999988876431 122332
Q ss_pred ----HHHHHHHHHHhccCcHHHHHHHHHHcHHhc-----CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC--------
Q 048578 332 ----VTLIAVLTACSHAGLIEKGKEIFYNMRRDY-----KVEP-NVKHYGCLVDLLCRARLLDEAYEVIRNM-------- 393 (519)
Q Consensus 332 ----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~-------- 393 (519)
.+++.|...|...|++++|.++++++.... +..+ ....++.|...|.+.+++.+|.++|.+.
T Consensus 364 ~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g 443 (508)
T KOG1840|consen 364 VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCG 443 (508)
T ss_pred hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhC
Confidence 489999999999999999999999887632 1112 2456778899999999999898888776
Q ss_pred CCCCCH-HHHHHHHHHHccccCCCCHHHHHHHHHHHHh
Q 048578 394 PMEPNA-VLWGSLLTACASADDGANVELAEIAMERLIK 430 (519)
Q Consensus 394 ~~~p~~-~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~ 430 (519)
+..|+. .+|..|...|.. .|+++.|.++.+.+..
T Consensus 444 ~~~~~~~~~~~nL~~~Y~~---~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 444 PDHPDVTYTYLNLAALYRA---QGNYEAAEELEEKVLN 478 (508)
T ss_pred CCCCchHHHHHHHHHHHHH---cccHHHHHHHHHHHHH
Confidence 233444 589999999999 9999999999998874
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.4e-08 Score=84.42 Aligned_cols=162 Identities=13% Similarity=0.087 Sum_probs=117.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHH
Q 048578 299 WNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDD-VTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLL 377 (519)
Q Consensus 299 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (519)
...+.-+|...|+...|..-+++.++. .|+. .++..+...|.+.|..+.|.+.|++..+ --+.+....|...-.+
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FL 113 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHH
Confidence 445666777778888888877777764 3443 4777777778888888888888887776 2334556777777778
Q ss_pred HhcCChHHHHHHHHhCCCCC----CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCch
Q 048578 378 CRARLLDEAYEVIRNMPMEP----NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWD 453 (519)
Q Consensus 378 ~~~~~~~~A~~~~~~~~~~p----~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 453 (519)
|..|++++|...|++.-..| -..+|..+.-+..+ .|+.+.|...|++.++.+|+.+.....++....+.|++-
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~---~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~ 190 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALK---AGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYA 190 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhh---cCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccch
Confidence 88888888888887761122 23356666655666 778888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhCCC
Q 048578 454 DAGKMRRLMKERNI 467 (519)
Q Consensus 454 ~A~~~~~~m~~~~~ 467 (519)
.|...+++....+.
T Consensus 191 ~Ar~~~~~~~~~~~ 204 (250)
T COG3063 191 PARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHHhccc
Confidence 88888888777665
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.2e-08 Score=88.76 Aligned_cols=143 Identities=6% Similarity=-0.235 Sum_probs=76.0
Q ss_pred CChHHHHHHHhcCCC-----C--chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHH
Q 048578 178 GDVKSAQLLFDQMTE-----K--NVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGK 250 (519)
Q Consensus 178 g~~~~A~~~~~~~~~-----~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 250 (519)
+..+.++.-+.++.. | ....|..+...|...|++++|...|++..+.. +.+...|..+...+...|+++.|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 444555555544432 1 12345555566666666666666666666543 224556666666666666666666
Q ss_pred HHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhh-HH-HHHHHHHHcCChHHHHHHHHHH
Q 048578 251 WVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCT-WN-SIIGGLAIHGCGEEAVKMFWQM 322 (519)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~-~l~~~~~~~g~~~~a~~~~~~m 322 (519)
..++...+.. +.+...+..+..++...|++++|.+.|+...+.++.. +. .........+++++|...+.+.
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 6666666543 3344555556666666666666666666654422211 11 1111122344556666655443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.8e-06 Score=75.29 Aligned_cols=380 Identities=12% Similarity=0.040 Sum_probs=222.8
Q ss_pred HHHhhcCCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccch
Q 048578 71 LIESLVNSSQIAYAHLVFNQIIN---PSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQV 147 (519)
Q Consensus 71 ~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 147 (519)
-+.+. |++++|...++.+.+ ++...+-.+.-++.-.|.+.+|..+-.+..+ ++..-..++..-.+.++-
T Consensus 66 C~fhL---gdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndE 137 (557)
T KOG3785|consen 66 CYFHL---GDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDE 137 (557)
T ss_pred HHHhh---ccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcH
Confidence 34555 888888888877633 4555566666666667777777776554432 333344455555566665
Q ss_pred HHHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--CchhHHHH-HHHHHHHcCChhHHHHHHHHHHhC
Q 048578 148 KGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTE--KNVVTWTA-MINGHVKQKNYREGIDLFRKMRDS 224 (519)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~ 224 (519)
+++...-...+ .+..-..+|.+...-.-.+++|..++.++.. |+-...|. +.-+|.+..-++-+.+++.-..+.
T Consensus 138 k~~~~fh~~Lq---D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 138 KRILTFHSSLQ---DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred HHHHHHHHHHh---hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 55444433322 2234445566666666788999999999876 44444444 445677888888888888777665
Q ss_pred CCCCCHHHHHHHHHHHhcc--CChHHHH------------HHHHHHHHcCC------------Cc-----chhHHHHHHH
Q 048578 225 GVEVNELTLVSVLSACANL--GASELGK------------WVHEFVNKNCI------------IL-----NDKLGAALTD 273 (519)
Q Consensus 225 ~~~~~~~~~~~ll~~~~~~--~~~~~a~------------~~~~~~~~~~~------------~~-----~~~~~~~l~~ 273 (519)
++.++...+..+....+. |+..+.+ ...+.+.+.++ -| -+...-.|+-
T Consensus 215 -~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~i 293 (557)
T KOG3785|consen 215 -FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLII 293 (557)
T ss_pred -CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhhee
Confidence 233333344333322222 2211111 01111222110 00 1222334566
Q ss_pred HHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcC-------ChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccC
Q 048578 274 MYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHG-------CGEEAVKMFWQMQMSGIKPDDV-TLIAVLTACSHAG 345 (519)
Q Consensus 274 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g 345 (519)
-|.+.+++++|..+.+.+..-.+.-|-.-.-.++..| ...-|.+.|+-.-+++..-|.. ---++..++.-..
T Consensus 294 YyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~ 373 (557)
T KOG3785|consen 294 YYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSF 373 (557)
T ss_pred eecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHH
Confidence 6888999999999988875544443332222233333 3344555555444444333322 2334444555556
Q ss_pred cHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHH-HHccccCCCCHHHHH
Q 048578 346 LIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PME-PNAVLWGSLLT-ACASADDGANVELAE 422 (519)
Q Consensus 346 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~-p~~~~~~~ll~-~~~~~~~~~~~~~a~ 422 (519)
+++..+-++..+.. +=...|...+ .+..+++..|.+.+|.++|-.+ +-+ .|..+|.+++. .|.+ .+..+.|.
T Consensus 374 qFddVl~YlnSi~s-YF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~---nkkP~lAW 448 (557)
T KOG3785|consen 374 QFDDVLTYLNSIES-YFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIR---NKKPQLAW 448 (557)
T ss_pred HHHHHHHHHHHHHH-HhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHh---cCCchHHH
Confidence 78888888888876 3444444444 4788999999999999999888 322 35666666554 4666 77888887
Q ss_pred HHHHHHHhhC-CCCC-chHHHHHHHHHhcCCchHHHHHHHHHHhCCCccC
Q 048578 423 IAMERLIKLE-PFND-GNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKN 470 (519)
Q Consensus 423 ~~~~~~~~~~-p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 470 (519)
.++ ++.+ |.+. .....++.-+.+++.+--|-+.|..+...+..|+
T Consensus 449 ~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pE 495 (557)
T KOG3785|consen 449 DMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPE 495 (557)
T ss_pred HHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCcc
Confidence 665 3444 3332 3444567778899998888899988888777664
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.9e-06 Score=79.40 Aligned_cols=383 Identities=9% Similarity=0.002 Sum_probs=215.4
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHc
Q 048578 66 TQLAKLIESLVNSSQIAYAHLVFNQIIN---PSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACG 142 (519)
Q Consensus 66 ~~ll~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 142 (519)
..++.-..+..++|++++|.+....+.. .+...+..=+-++.+.++|++|+.+.+.-... ..+..-+ +=++|+
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~--fEKAYc 88 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFF--FEKAYC 88 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhh--HHHHHH
Confidence 3455555555556899999988887743 45566777788888999999998665543321 1111111 234444
Q ss_pred --CccchHHHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCchhHHHHHHHHHHH-cCChhHHHHHHH
Q 048578 143 --DLRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVK-QKNYREGIDLFR 219 (519)
Q Consensus 143 --~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~ 219 (519)
+.+..++++..+.-.. +.+..+...-...+.+.|++++|..+|+.+.+.+...+...+.+-+- .+-...+ +
T Consensus 89 ~Yrlnk~Dealk~~~~~~--~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~-~--- 162 (652)
T KOG2376|consen 89 EYRLNKLDEALKTLKGLD--RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQV-Q--- 162 (652)
T ss_pred HHHcccHHHHHHHHhccc--ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhH-H---
Confidence 4444667666666222 22334556666778888888888888888876555555444433221 1111111 1
Q ss_pred HHHhCCCCCCHHHHHHHH---HHHhccCChHHHHHHHHHHHHcCC-------Cc------ch-hHHHHHHHHHHhcCCHH
Q 048578 220 KMRDSGVEVNELTLVSVL---SACANLGASELGKWVHEFVNKNCI-------IL------ND-KLGAALTDMYAKCGYIE 282 (519)
Q Consensus 220 ~m~~~~~~~~~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~~~-------~~------~~-~~~~~l~~~~~~~g~~~ 282 (519)
.+......| ..+|..+. ..+...|++.+|+++++...+.+. .. .. ..-..+..++-..|+-+
T Consensus 163 ~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 163 LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 122222233 33444443 345678999999999999843220 00 01 12234566777889999
Q ss_pred HHHHHHhhcCCC---Ch----hhHHHHHHHHH---------------------------------------------HcC
Q 048578 283 EALRVFKIVLEK---NV----CTWNSIIGGLA---------------------------------------------IHG 310 (519)
Q Consensus 283 ~a~~~~~~~~~~---~~----~~~~~l~~~~~---------------------------------------------~~g 310 (519)
+|.++|..+++. |. ..-|.++..-. ..+
T Consensus 242 ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tn 321 (652)
T KOG2376|consen 242 EASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTN 321 (652)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999887543 11 01111111000 001
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--cCcHHHHHHHHHHcHHhcCCCCC-hhHHHHHHHHHHhcCChHHHH
Q 048578 311 CGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSH--AGLIEKGKEIFYNMRRDYKVEPN-VKHYGCLVDLLCRARLLDEAY 387 (519)
Q Consensus 311 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~ 387 (519)
.-+.+.++.... -+..|. ..+..++..+.+ .....++..++....+ +.+.. ...--.++......|+++.|.
T Consensus 322 k~~q~r~~~a~l--p~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~gn~~~A~ 396 (652)
T KOG2376|consen 322 KMDQVRELSASL--PGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQGNPEVAL 396 (652)
T ss_pred hHHHHHHHHHhC--CccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCHHHHH
Confidence 111111111110 011222 234444443322 2246677777777766 33333 345556778888999999999
Q ss_pred HHHH--------hC-CCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhC----CC---CCchHHHHHHHHHhcCC
Q 048578 388 EVIR--------NM-PMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLE----PF---NDGNYVLMSNIYAAKAQ 451 (519)
Q Consensus 388 ~~~~--------~~-~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~----p~---~~~~~~~l~~~~~~~g~ 451 (519)
+++. .+ .+.-.+.+...+...+.+ .++-+.|..++..++..- +. -...+..++..-.+.|+
T Consensus 397 ~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~---~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~ 473 (652)
T KOG2376|consen 397 EILSLFLESWKSSILEAKHLPGTVGAIVALYYK---IKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGN 473 (652)
T ss_pred HHHHHHhhhhhhhhhhhccChhHHHHHHHHHHh---ccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCc
Confidence 9988 44 233334445555556666 556666777777776421 22 23344555666678899
Q ss_pred chHHHHHHHHHHhCCC
Q 048578 452 WDDAGKMRRLMKERNI 467 (519)
Q Consensus 452 ~~~A~~~~~~m~~~~~ 467 (519)
-++|..+++++.+.+.
T Consensus 474 ~~ea~s~leel~k~n~ 489 (652)
T KOG2376|consen 474 EEEASSLLEELVKFNP 489 (652)
T ss_pred hHHHHHHHHHHHHhCC
Confidence 9999999999987443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.1e-07 Score=86.84 Aligned_cols=368 Identities=14% Similarity=0.067 Sum_probs=190.9
Q ss_pred CCCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCc-chHHHHHHHHcCccchHHHHH
Q 048578 77 NSSQIAYAHLVFNQII---NPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDS-FTYPILLKACGDLRQVKGVHS 152 (519)
Q Consensus 77 ~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~~~~ 152 (519)
.+|+++.|+..|.+.+ ++|...|+.-..+|+..|++++|++=-.+-++ +.|+- ..|.-.-.++.-.|+.+++..
T Consensus 14 s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~eA~~ 91 (539)
T KOG0548|consen 14 SSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEEAIL 91 (539)
T ss_pred ccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHHHHH
Confidence 3489999999998874 35677788888899999999988887777666 45654 367777777777777777766
Q ss_pred HHHHhCCCCC-chhHHHHHHHHHHhcCChHHHHHHH------hcCCC-C------chhHHHHHHHHHHHc-------CCh
Q 048578 153 LVVKSKDFNS-VIHSLTRLITFYCNFGDVKSAQLLF------DQMTE-K------NVVTWTAMINGHVKQ-------KNY 211 (519)
Q Consensus 153 ~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~------~~~~~-~------~~~~~~~li~~~~~~-------~~~ 211 (519)
.+.+--...| +...++.+..++.... .+.+.| ..+.. | ....|..++..+-+. .+.
T Consensus 92 ay~~GL~~d~~n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d 168 (539)
T KOG0548|consen 92 AYSEGLEKDPSNKQLKTGLAQAYLEDY---AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLND 168 (539)
T ss_pred HHHHHhhcCCchHHHHHhHHHhhhHHH---HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccccc
Confidence 6655433444 4556666666661110 011111 11100 0 011233332221111 001
Q ss_pred hHHHHHHHHHH--------hCC-------CCC------------C----------HHHHHHHHHHHhccCChHHHHHHHH
Q 048578 212 REGIDLFRKMR--------DSG-------VEV------------N----------ELTLVSVLSACANLGASELGKWVHE 254 (519)
Q Consensus 212 ~~a~~~~~~m~--------~~~-------~~~------------~----------~~~~~~ll~~~~~~~~~~~a~~~~~ 254 (519)
+...+..-.+. ..| ..| | ..-...+.++..+..+++.+.+-+.
T Consensus 169 ~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~ 248 (539)
T KOG0548|consen 169 PRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYA 248 (539)
T ss_pred HHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 11111111110 000 011 0 0123345555666667777777777
Q ss_pred HHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh----------hHHHHHHHHHHcCChHHHHHHHHHHHH
Q 048578 255 FVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVC----------TWNSIIGGLAIHGCGEEAVKMFWQMQM 324 (519)
Q Consensus 255 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----------~~~~l~~~~~~~g~~~~a~~~~~~m~~ 324 (519)
...... .+...++....+|...|.+.++...-+...+.+.. .+..+..++.+.++++.++..|++...
T Consensus 249 ~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLt 326 (539)
T KOG0548|consen 249 KALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALT 326 (539)
T ss_pred HHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhh
Confidence 666654 45555666677777777777766665555443221 122233355556677777777777655
Q ss_pred CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHH
Q 048578 325 SGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNV-KHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVL 401 (519)
Q Consensus 325 ~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~ 401 (519)
....|+..+ +....+++....+...- +.|.. .-...-...+.+.|++..|+..|.++ ...| |...
T Consensus 327 e~Rt~~~ls---------~lk~~Ek~~k~~e~~a~---~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~l 394 (539)
T KOG0548|consen 327 EHRTPDLLS---------KLKEAEKALKEAERKAY---INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARL 394 (539)
T ss_pred hhcCHHHHH---------HHHHHHHHHHHHHHHHh---hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHH
Confidence 444443221 11112222222211111 11211 01111234455566666666666665 3344 3345
Q ss_pred HHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048578 402 WGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 402 ~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
|..-.-+|.+ .+++..|..-.+..++++|+....|..=+.++....+|++|++.|++-.+.+
T Consensus 395 YsNRAac~~k---L~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 395 YSNRAACYLK---LGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHH---HhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5555555566 6666666666666666666666666666666666666666666666555444
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.8e-06 Score=82.47 Aligned_cols=297 Identities=11% Similarity=-0.073 Sum_probs=182.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCC---Cchh---HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048578 164 IHSLTRLITFYCNFGDVKSAQLLFDQMTE---KNVV---TWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVL 237 (519)
Q Consensus 164 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 237 (519)
...+..+...+...|+.+.+...+....+ ++.. ........+...|++++|.+++++..+.. +.+...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-h
Confidence 34555566666677777776665555432 2211 22233445678899999999999988763 223333332 2
Q ss_pred HHHh----ccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcC
Q 048578 238 SACA----NLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHG 310 (519)
Q Consensus 238 ~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g 310 (519)
..+. ..+..+.+...+.. .....+........+...+...|++++|...+++..+ .+...+..+...+...|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Confidence 1222 23444555554443 1112233344555667788999999999999998855 34567788888999999
Q ss_pred ChHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHH-H--HHHHHHHhcCChH
Q 048578 311 CGEEAVKMFWQMQMSGI-KPDD--VTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHY-G--CLVDLLCRARLLD 384 (519)
Q Consensus 311 ~~~~a~~~~~~m~~~g~-~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~~~~~ 384 (519)
++++|...+++...... .|+. ..|..+...+...|++++|..++++........+..... + .++.-+...|...
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 99999999998876431 2332 245578888999999999999999986421111222111 1 2233333444333
Q ss_pred HHHHH---HHhC-CCCC---CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhC-C--------CCCchHHHHHHHHHh
Q 048578 385 EAYEV---IRNM-PMEP---NAVLWGSLLTACASADDGANVELAEIAMERLIKLE-P--------FNDGNYVLMSNIYAA 448 (519)
Q Consensus 385 ~A~~~---~~~~-~~~p---~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~-p--------~~~~~~~~l~~~~~~ 448 (519)
.+.++ .... ...| ..........++.. .|+.+.|...++.+.... . .........+.++..
T Consensus 243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~---~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~ 319 (355)
T cd05804 243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAG---AGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFA 319 (355)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHH
Confidence 33332 1111 1101 11222245555677 889999999999887633 1 134555677778889
Q ss_pred cCCchHHHHHHHHHHhCC
Q 048578 449 KAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 449 ~g~~~~A~~~~~~m~~~~ 466 (519)
.|++++|.+.+.......
T Consensus 320 ~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 320 EGNYATALELLGPVRDDL 337 (355)
T ss_pred cCCHHHHHHHHHHHHHHH
Confidence 999999999998887644
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.4e-08 Score=92.03 Aligned_cols=247 Identities=13% Similarity=0.049 Sum_probs=131.9
Q ss_pred HHhcCChHHHHHHHhcCCC--C--chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHH
Q 048578 174 YCNFGDVKSAQLLFDQMTE--K--NVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELG 249 (519)
Q Consensus 174 ~~~~g~~~~A~~~~~~~~~--~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 249 (519)
+.-.|++..++.-.+ ... + +.....-+.+++...|+++.++ .++.... .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 444677777775444 211 1 2234455667788888776544 3333332 55655555555444433333333
Q ss_pred HHHHHHHHHcCCC-cchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 048578 250 KWVHEFVNKNCII-LNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIK 328 (519)
Q Consensus 250 ~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 328 (519)
..-++........ .+..+......++...|++++|++++... .+.......+..+.+.++++.|.+.++.|.+. .
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~ 161 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--D 161 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--S
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C
Confidence 3333332222222 23333333345566677777777777654 45556666677777777777777777777653 2
Q ss_pred CCHHHHHHHHHHHhc----cCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHH
Q 048578 329 PDDVTLIAVLTACSH----AGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLW 402 (519)
Q Consensus 329 p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~ 402 (519)
.| .+...+..++.. .+.+..|..+|+++.. ...+++.+.+.+..++...|++++|.+++++. ...| +..+.
T Consensus 162 eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~L 238 (290)
T PF04733_consen 162 ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTL 238 (290)
T ss_dssp CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHH
T ss_pred Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence 23 334444444322 2356777777777665 34456666666777777777777777766665 3344 33355
Q ss_pred HHHHHHHccccCCCCH-HHHHHHHHHHHhhCCCC
Q 048578 403 GSLLTACASADDGANV-ELAEIAMERLIKLEPFN 435 (519)
Q Consensus 403 ~~ll~~~~~~~~~~~~-~~a~~~~~~~~~~~p~~ 435 (519)
..++..... .|+. +.+.+++.++....|..
T Consensus 239 aNliv~~~~---~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 239 ANLIVCSLH---LGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HHHHHHHHH---TT-TCHHHHHHHHHCHHHTTTS
T ss_pred HHHHHHHHH---hCCChhHHHHHHHHHHHhCCCC
Confidence 555555555 4444 55666666666666653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.4e-08 Score=87.76 Aligned_cols=245 Identities=13% Similarity=0.070 Sum_probs=134.4
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHH
Q 048578 203 NGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIE 282 (519)
Q Consensus 203 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 282 (519)
+-+.-.|++..++.-.+ ........+......+.+++...|+.+.+. ..+.... .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 34455677777765554 222221222334445566666677655432 3333333 455555555544444434555
Q ss_pred HHHHHHhhcCCCC-h---hhHH-HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHc
Q 048578 283 EALRVFKIVLEKN-V---CTWN-SIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNM 357 (519)
Q Consensus 283 ~a~~~~~~~~~~~-~---~~~~-~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 357 (519)
.+..-++...... . .++. .....+...|++++|++++.+. .+.......+.++.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555554443221 1 1111 1223344567777777766532 34556666677777777777777777777
Q ss_pred HHhcCCCCChhHHHHHHHHHH----hcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhh
Q 048578 358 RRDYKVEPNVKHYGCLVDLLC----RARLLDEAYEVIRNM--PMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKL 431 (519)
Q Consensus 358 ~~~~~~~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~ 431 (519)
.+ +..| .+...++.++. -.+.+.+|..+|+++ ...++..+.+.+..++.. .|++++|.+.++++.+.
T Consensus 158 ~~---~~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~---~~~~~eAe~~L~~al~~ 230 (290)
T PF04733_consen 158 QQ---IDED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQ---LGHYEEAEELLEEALEK 230 (290)
T ss_dssp HC---CSCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHH---CT-HHHHHHHHHHHCCC
T ss_pred Hh---cCCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHh
Confidence 65 2233 22333333332 233577777777777 444566677777777777 77777777777777777
Q ss_pred CCCCCchHHHHHHHHHhcCCc-hHHHHHHHHHHhC
Q 048578 432 EPFNDGNYVLMSNIYAAKAQW-DDAGKMRRLMKER 465 (519)
Q Consensus 432 ~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~ 465 (519)
+|.++.++..++-+....|+. +.+.+++.+++..
T Consensus 231 ~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 231 DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp -CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 777777777777777777766 5566677766654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.4e-05 Score=74.12 Aligned_cols=420 Identities=11% Similarity=0.023 Sum_probs=248.7
Q ss_pred CCcccHHH-HHHhccCchHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCC---CCCcchHHHHH
Q 048578 28 TKSHHHLP-LLQKCTHLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQII---NPSTFAFNTVI 103 (519)
Q Consensus 28 p~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll 103 (519)
|++....- .|.+.++..++......-.+.. ..+.+.|..+.-.+... .++++|++.|.... +.|...|.-+-
T Consensus 41 geslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~d---K~Y~eaiKcy~nAl~~~~dN~qilrDls 116 (700)
T KOG1156|consen 41 GESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSD---KKYDEAIKCYRNALKIEKDNLQILRDLS 116 (700)
T ss_pred chhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhh---hhHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 44444433 3444466666666555555432 33566777776666666 89999999999873 34566777777
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCc-chHHHHHHHHcCccc---hHHHHHHHHHhCCCCCchhHHHHH------HHH
Q 048578 104 RGYAEAGLGHRGIQLYTQMIGNGLDPDS-FTYPILLKACGDLRQ---VKGVHSLVVKSKDFNSVIHSLTRL------ITF 173 (519)
Q Consensus 104 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l------~~~ 173 (519)
-.-++.|+++.....-....+. .|+. ..|.....+..-.|+ +-.+.+.+.+...-.|+...+... ...
T Consensus 117 lLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i 194 (700)
T KOG1156|consen 117 LLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQI 194 (700)
T ss_pred HHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Confidence 7777889999888888888773 3444 356666666666666 444444444444234555444332 345
Q ss_pred HHhcCChHHHHHHHhcCCC--Cchh-HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh-ccCC-hHH
Q 048578 174 YCNFGDVKSAQLLFDQMTE--KNVV-TWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACA-NLGA-SEL 248 (519)
Q Consensus 174 ~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~-~~~~-~~~ 248 (519)
..+.|..++|.+.+..... -|-. .-.+-...+.+.+++++|..++..+... .||..-|...+..+. +-.+ .+.
T Consensus 195 ~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~ 272 (700)
T KOG1156|consen 195 LIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEA 272 (700)
T ss_pred HHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHH
Confidence 6678889999988877654 2222 2344566788999999999999999987 577777766665544 3333 333
Q ss_pred HHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHH-HHHHhhcCCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHH--
Q 048578 249 GKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEA-LRVFKIVLEKN-VCTWNSIIGGLAIHGCGEEAVKMFWQMQM-- 324 (519)
Q Consensus 249 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-- 324 (519)
...+|....+.- +........=++ .....++... -.++....+.+ +.++..+...|-.....+-..++...+..
T Consensus 273 lk~ly~~ls~~y-~r~e~p~Rlpls-vl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L 350 (700)
T KOG1156|consen 273 LKALYAILSEKY-PRHECPRRLPLS-VLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSL 350 (700)
T ss_pred HHHHHHHHhhcC-cccccchhccHH-HhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhc
Confidence 335555554421 111111110011 1111222222 22333333332 23344444433322222211122222211
Q ss_pred --CC----------CCCCHH--HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHH
Q 048578 325 --SG----------IKPDDV--TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPN-VKHYGCLVDLLCRARLLDEAYEV 389 (519)
Q Consensus 325 --~g----------~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~ 389 (519)
.| -+|... |+..++..+-..|+++.|..+++.... . .|+ +..|..-.+.+...|++++|..+
T Consensus 351 ~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--H-TPTliEly~~KaRI~kH~G~l~eAa~~ 427 (700)
T KOG1156|consen 351 SGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--H-TPTLIELYLVKARIFKHAGLLDEAAAW 427 (700)
T ss_pred ccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--c-CchHHHHHHHHHHHHHhcCChHHHHHH
Confidence 11 144443 566778888999999999999998876 2 344 45666777889999999999999
Q ss_pred HHhC-CCC-CCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC---C---C-chHH--HHHHHHHhcCCchHHHHH
Q 048578 390 IRNM-PME-PNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPF---N---D-GNYV--LMSNIYAAKAQWDDAGKM 458 (519)
Q Consensus 390 ~~~~-~~~-p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~---~---~-~~~~--~l~~~~~~~g~~~~A~~~ 458 (519)
+++. ++. ||...-.--..-..+ .++.++|.++..+.-+.+-+ + . -.|. .=+.+|.++|++..|++-
T Consensus 428 l~ea~elD~aDR~INsKcAKYmLr---An~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKk 504 (700)
T KOG1156|consen 428 LDEAQELDTADRAINSKCAKYMLR---ANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKK 504 (700)
T ss_pred HHHHHhccchhHHHHHHHHHHHHH---ccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHH
Confidence 9988 433 444444345555666 77888888888877665532 1 1 1222 235678888888888876
Q ss_pred HHHHH
Q 048578 459 RRLMK 463 (519)
Q Consensus 459 ~~~m~ 463 (519)
|..+.
T Consensus 505 fh~i~ 509 (700)
T KOG1156|consen 505 FHEIE 509 (700)
T ss_pred HhhHH
Confidence 65543
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.5e-08 Score=92.00 Aligned_cols=219 Identities=16% Similarity=0.094 Sum_probs=172.2
Q ss_pred HhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHHcCChHHHH
Q 048578 240 CANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEK---NVCTWNSIIGGLAIHGCGEEAV 316 (519)
Q Consensus 240 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~ 316 (519)
+.+.|++..|.-.|+...+.+ |-+...|..|.......++-..|+..+.+..+- |..+.-+|.-.|...|.-..|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 457788888888888888876 667888888888888888888888888888653 5566777777888888888899
Q ss_pred HHHHHHHHCCCC-----C---CHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHH
Q 048578 317 KMFWQMQMSGIK-----P---DDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYE 388 (519)
Q Consensus 317 ~~~~~m~~~g~~-----p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 388 (519)
..+++-+....+ + +..+-.. ..+.....+.+..++|-.+....+..+|+.....|.-.|--.|.+++|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 988887653210 0 0000000 12333344556666666666655666888899999999999999999999
Q ss_pred HHHhC-CCCCC-HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048578 389 VIRNM-PMEPN-AVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 389 ~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
.|+.. .++|+ ...||.|...++. ..+.++|+..|.+++++.|.-.+++..|+-.|...|.|++|.+.|=....
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN---~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLAN---GNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcC---CcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99998 77885 4589999888999 88999999999999999999999999999999999999999998876654
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.87 E-value=7.3e-06 Score=72.44 Aligned_cols=297 Identities=12% Similarity=0.064 Sum_probs=201.6
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCCCCchhHHHHHH---HHHHHcCChhHHHHHHHHHHhCCCCCCHHHHH-HHHH
Q 048578 163 VIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMI---NGHVKQKNYREGIDLFRKMRDSGVEVNELTLV-SVLS 238 (519)
Q Consensus 163 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~ll~ 238 (519)
++.-..-+...+...|++..|+.-|....+-|+..|.++. ..|...|+...|+.-+....+. +||-..-. .-..
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhch
Confidence 3344445666777888888898888888887777666654 4678888888888888887764 56543222 1233
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCcc--------------hhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHH
Q 048578 239 ACANLGASELGKWVHEFVNKNCIILN--------------DKLGAALTDMYAKCGYIEEALRVFKIVLEK---NVCTWNS 301 (519)
Q Consensus 239 ~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~ 301 (519)
.+.+.|.++.|..-|+.+++.....+ .......+..+...|+...|+.....+.+- |...+..
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~ 194 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQA 194 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHH
Confidence 46788888888888888887652111 111223444566678888888888777553 6667777
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhH----HHHH----
Q 048578 302 IIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKH----YGCL---- 373 (519)
Q Consensus 302 l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~~l---- 373 (519)
-..+|...|.+..|+.=++..-+.. .-+..++.-+-..+...|+.+.++...++..+ +.||-.. |..|
T Consensus 195 Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK---ldpdHK~Cf~~YKklkKv~ 270 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK---LDPDHKLCFPFYKKLKKVV 270 (504)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc---cCcchhhHHHHHHHHHHHH
Confidence 7888888888888887777665532 33445666777778888888888888877765 4455321 1111
Q ss_pred -----HHHHHhcCChHHHHHHHHhC-CCCCCH--HHHHH---HHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHH
Q 048578 374 -----VDLLCRARLLDEAYEVIRNM-PMEPNA--VLWGS---LLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLM 442 (519)
Q Consensus 374 -----~~~~~~~~~~~~A~~~~~~~-~~~p~~--~~~~~---ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 442 (519)
+....+.++|.++++..+.. ...|.. ..++. +-.++.. .+++-+|++...+++..+|+|..++..-
T Consensus 271 K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~---d~~~~eAiqqC~evL~~d~~dv~~l~dR 347 (504)
T KOG0624|consen 271 KSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYRE---DEQFGEAIQQCKEVLDIDPDDVQVLCDR 347 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccc---cCCHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 12234566777777776665 445542 22332 2223333 7889999999999999999989999999
Q ss_pred HHHHHhcCCchHHHHHHHHHHhCCCc
Q 048578 443 SNIYAAKAQWDDAGKMRRLMKERNIV 468 (519)
Q Consensus 443 ~~~~~~~g~~~~A~~~~~~m~~~~~~ 468 (519)
+.+|.-...+++|+.-|++..+.+..
T Consensus 348 AeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 348 AEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 99999888999999888888766554
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.2e-06 Score=75.78 Aligned_cols=311 Identities=13% Similarity=0.078 Sum_probs=141.9
Q ss_pred CCCCcchHHHHHHHHcCccchHHHHHHHHHhCCCCC-chhHHHHHHHHHHhcCChHHHHHHHhcCCC--CchhHHHH-HH
Q 048578 127 LDPDSFTYPILLKACGDLRQVKGVHSLVVKSKDFNS-VIHSLTRLITFYCNFGDVKSAQLLFDQMTE--KNVVTWTA-MI 202 (519)
Q Consensus 127 ~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-li 202 (519)
+......|.+++..+.+..+...+.+.+...++..| +......|..+|....++..|-.+++++.. |...-|.. -.
T Consensus 6 ~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~A 85 (459)
T KOG4340|consen 6 AQIPEGEFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQA 85 (459)
T ss_pred ccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 333334455555555555554444444444433333 444455555666666666666666666544 33222221 12
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH--HHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCC
Q 048578 203 NGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLS--ACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGY 280 (519)
Q Consensus 203 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 280 (519)
..+-+.+.+.+|+++...|.+. |+...-..-+. .....+|+..+..+.++....| +..+.+...-...+.|+
T Consensus 86 QSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegq 159 (459)
T KOG4340|consen 86 QSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQ 159 (459)
T ss_pred HHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeecccc
Confidence 3444555566666665555432 11111111111 1223344444444444433211 22222223333344455
Q ss_pred HHHHHHHHhhcCCC----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH-----HHHHHhccCcHHHHH
Q 048578 281 IEEALRVFKIVLEK----NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIA-----VLTACSHAGLIEKGK 351 (519)
Q Consensus 281 ~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~-----l~~~~~~~g~~~~a~ 351 (519)
++.|.+-|+...+- ...+|+..+. ..+.|+++.|++...+++++|++.-.. +++ .+.+ ...|+. .
T Consensus 160 yEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPE-lgIGm~tegiDv-rsvgNt---~ 233 (459)
T KOG4340|consen 160 YEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPE-LGIGMTTEGIDV-RSVGNT---L 233 (459)
T ss_pred HHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCc-cCccceeccCch-hcccch---H
Confidence 55555555444331 2233333222 223444555555555555444321000 000 0000 000000 0
Q ss_pred HHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHH
Q 048578 352 EIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM----PMEPNAVLWGSLLTACASADDGANVELAEIAMER 427 (519)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~ 427 (519)
.+... --+..+|.-.-.+.+.|+++.|.+.+..| ....|++|...+.-.-. .+++-...+-+.-
T Consensus 234 ~lh~S--------al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~----~~~p~~g~~KLqF 301 (459)
T KOG4340|consen 234 VLHQS--------ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM----DARPTEGFEKLQF 301 (459)
T ss_pred HHHHH--------HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc----cCCccccHHHHHH
Confidence 00000 00122333344456777888888887777 22345566555433322 3445555666666
Q ss_pred HHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 048578 428 LIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRL 461 (519)
Q Consensus 428 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (519)
+++++|-.+.+|..++..|++..-++-|..++-+
T Consensus 302 LL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 302 LLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 6777777778888888888888777777776643
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.1e-05 Score=71.53 Aligned_cols=371 Identities=13% Similarity=0.058 Sum_probs=220.4
Q ss_pred CChHHHHHHHhcCCCCC---c-chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHHH
Q 048578 79 SQIAYAHLVFNQIINPS---T-FAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLV 154 (519)
Q Consensus 79 ~~~~~A~~~~~~~~~~~---~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ 154 (519)
.++..|+.+++.-...+ . .+---+..++...|++++|+..|.-+.+.. .|+...+..+.....-.|...++...+
T Consensus 36 rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~ 114 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIA 114 (557)
T ss_pred ccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHH
Confidence 67888887776543211 1 122224567778999999999999988753 455555555555555566666666666
Q ss_pred HHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 048578 155 VKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLV 234 (519)
Q Consensus 155 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 234 (519)
.+.. .++..-..+...-.+.++-++-..+-+.+... ..---+|....-..-.+.+|+++|.+.... .|+-...+
T Consensus 115 ~ka~---k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alN 188 (557)
T KOG3785|consen 115 EKAP---KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALN 188 (557)
T ss_pred hhCC---CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhH
Confidence 5543 23333444556666777766666655555432 222334455545556789999999999876 45555565
Q ss_pred HHHHH-HhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhc--CCHHH--HHHHHhhcC----------CC-----
Q 048578 235 SVLSA-CANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKC--GYIEE--ALRVFKIVL----------EK----- 294 (519)
Q Consensus 235 ~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~--a~~~~~~~~----------~~----- 294 (519)
.-+.. |.+..-++.+..++...++.- +.++...|.......+. |+..+ -.++-+.+. +.
T Consensus 189 Vy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvF 267 (557)
T KOG3785|consen 189 VYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVF 267 (557)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEE
Confidence 55544 567777788888877776653 44444455444433332 22211 111211111 11
Q ss_pred ----------------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-----HhccCcHHHHHHH
Q 048578 295 ----------------NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTA-----CSHAGLIEKGKEI 353 (519)
Q Consensus 295 ----------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~-----~~~~g~~~~a~~~ 353 (519)
=+.+-..++-.|.+.+++.+|..+.+++.- ..|-......+..+ ........-|.+.
T Consensus 268 rngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqf 345 (557)
T KOG3785|consen 268 RNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQF 345 (557)
T ss_pred eCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHH
Confidence 122334455567788899999888877542 23433333222222 1222234556666
Q ss_pred HHHcHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHh
Q 048578 354 FYNMRRDYKVEPN-VKHYGCLVDLLCRARLLDEAYEVIRNM--PMEPNAVLWGSLLTACASADDGANVELAEIAMERLIK 430 (519)
Q Consensus 354 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~ 430 (519)
|+..-+ .+...| +.--.++...+.-..++++++-.++.+ -+..|....-.+.++.+. .|++.+|+++|-++..
T Consensus 346 fqlVG~-Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~a---tgny~eaEelf~~is~ 421 (557)
T KOG3785|consen 346 FQLVGE-SALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLA---TGNYVEAEELFIRISG 421 (557)
T ss_pred HHHhcc-cccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHH---hcChHHHHHHHhhhcC
Confidence 655544 343333 223345666677777888888888777 223333333457788888 8999999999987766
Q ss_pred hCCCCCchHH-HHHHHHHhcCCchHHHHHHHHHH
Q 048578 431 LEPFNDGNYV-LMSNIYAAKAQWDDAGKMRRLMK 463 (519)
Q Consensus 431 ~~p~~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~ 463 (519)
.+-.|..+|. .|+++|.+.|+.+-|+.++-++.
T Consensus 422 ~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~ 455 (557)
T KOG3785|consen 422 PEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN 455 (557)
T ss_pred hhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC
Confidence 6644555554 67889999999999998876653
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.84 E-value=9.5e-06 Score=70.31 Aligned_cols=387 Identities=11% Similarity=0.020 Sum_probs=205.3
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHH-HHH
Q 048578 66 TQLAKLIESLVNSSQIAYAHLVFNQIIN---PSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILL-KAC 141 (519)
Q Consensus 66 ~~ll~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll-~~~ 141 (519)
++.+..+.+. .++++|++++....+ ++....+.+..+|....++..|-..|+++-.. .|...-|...- ..+
T Consensus 14 taviy~lI~d---~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 14 TAVVYRLIRD---ARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred HHHHHHHHHH---hhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 3444444455 667777766665533 24455666666677777777777777776652 34333332111 111
Q ss_pred cCccchHHHHHHHHHhCCCCCchh--HHHHHHHHHHhcCChHHHHHHHhcCCC-CchhHHHHHHHHHHHcCChhHHHHHH
Q 048578 142 GDLRQVKGVHSLVVKSKDFNSVIH--SLTRLITFYCNFGDVKSAQLLFDQMTE-KNVVTWTAMINGHVKQKNYREGIDLF 218 (519)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~ 218 (519)
-+.+....++..+...+ -.++.. +...-.......+++..+..++++... .+..+.+...-...+.|+++.|.+-|
T Consensus 89 Y~A~i~ADALrV~~~~~-D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLL-DNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred HHhcccHHHHHHHHHhc-CCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHH
Confidence 12222222222222222 111111 111111223456777777778877774 45555555555566778888888888
Q ss_pred HHHHhC-CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCc-------------c---------------hhHHH
Q 048578 219 RKMRDS-GVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIIL-------------N---------------DKLGA 269 (519)
Q Consensus 219 ~~m~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~---------------~~~~~ 269 (519)
+...+- |.. ....|+..+ ++.+.++.+.|.+...++..+|+.. | ...+|
T Consensus 168 qaAlqvsGyq-pllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfN 245 (459)
T KOG4340|consen 168 QAALQVSGYQ-PLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFN 245 (459)
T ss_pred HHHHhhcCCC-chhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhh
Confidence 777665 444 344565544 3446677788888877777765421 1 11223
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCC-----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 048578 270 ALTDMYAKCGYIEEALRVFKIVLEK-----NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHA 344 (519)
Q Consensus 270 ~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 344 (519)
.-...+.+.|+++.|.+.+-.|+.+ |++|...+.-.- ..+++.+..+-++-+.... +....||..++-.||+.
T Consensus 246 LKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKN 323 (459)
T KOG4340|consen 246 LKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKN 323 (459)
T ss_pred hhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhh
Confidence 3333456788999999998888654 666655543321 2345555555555555543 33456888888899999
Q ss_pred CcHHHHHHHHHHcHHhcCCC-CChhHHHHHHHHHHhc-CChHHHHHHHHhC-C-CCCCHHHHHHHHHHHccccCCCCHHH
Q 048578 345 GLIEKGKEIFYNMRRDYKVE-PNVKHYGCLVDLLCRA-RLLDEAYEVIRNM-P-MEPNAVLWGSLLTACASADDGANVEL 420 (519)
Q Consensus 345 g~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~~~~~~~~~ 420 (519)
.-++.|-+++-+-.. .... .+...|+ |++++..+ -..++|.+-++.+ + +.-......+-++--...++......
T Consensus 324 eyf~lAADvLAEn~~-lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ 401 (459)
T KOG4340|consen 324 EYFDLAADVLAENAH-LTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRK 401 (459)
T ss_pred HHHhHHHHHHhhCcc-hhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 999988888765432 1111 1223333 44444443 3566666555544 1 00000011111111111001111223
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 421 AEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 421 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
+.+-++..++.. .......++.|.+..++..++++|+.-.+.--
T Consensus 402 ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ 445 (459)
T KOG4340|consen 402 AVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCN 445 (459)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhhhc
Confidence 333444444443 11344567778899999999999988766443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.9e-05 Score=68.73 Aligned_cols=310 Identities=14% Similarity=0.110 Sum_probs=182.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHH---HHcCccchHHHHHHHHHhCCCCCchh-HHHHHHHHHHh
Q 048578 101 TVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLK---ACGDLRQVKGVHSLVVKSKDFNSVIH-SLTRLITFYCN 176 (519)
Q Consensus 101 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~ 176 (519)
-+...+..+|++..|+.-|....+ .|+..|..+.+ .|...|+.+.++..+.+.-.+.|+-. .-..-...+.+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve----~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVE----GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHc----CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhh
Confidence 356777888999999999998877 34555554443 22233332222222222111333311 11112234455
Q ss_pred cCChHHHHHHHhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 048578 177 FGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFV 256 (519)
Q Consensus 177 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 256 (519)
.|+++.|..-|+.+.+.++. -+....++.+.-..++-. .....+..+...|+...|......+
T Consensus 119 ~Gele~A~~DF~~vl~~~~s-~~~~~eaqskl~~~~e~~----------------~l~~ql~s~~~~GD~~~ai~~i~~l 181 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPS-NGLVLEAQSKLALIQEHW----------------VLVQQLKSASGSGDCQNAIEMITHL 181 (504)
T ss_pred cccHHHHHHHHHHHHhcCCC-cchhHHHHHHHHhHHHHH----------------HHHHHHHHHhcCCchhhHHHHHHHH
Confidence 55666655555555432110 000111111111111111 1122333445567777777777777
Q ss_pred HHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhc---CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 048578 257 NKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIV---LEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVT 333 (519)
Q Consensus 257 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 333 (519)
++.. +=+...+..-..+|...|++..|+.-+... ...+...+.-+-..+...|+.+.++...++-.+ +.||...
T Consensus 182 lEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~ 258 (504)
T KOG0624|consen 182 LEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKL 258 (504)
T ss_pred HhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhh
Confidence 7653 335556666677888888888887666544 445666666677777788888888887777766 4666542
Q ss_pred ----HHHH---------HHHHhccCcHHHHHHHHHHcHHhcCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhC-C
Q 048578 334 ----LIAV---------LTACSHAGLIEKGKEIFYNMRRDYKVEPN-----VKHYGCLVDLLCRARLLDEAYEVIRNM-P 394 (519)
Q Consensus 334 ----~~~l---------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~-~ 394 (519)
|..+ +......++|.++.+..+...+. .|. ...+..+-.++..-+++.+|++...+. .
T Consensus 259 Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~ 335 (504)
T KOG0624|consen 259 CFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD 335 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh
Confidence 1111 12244567788888777777662 233 223445556677788999999888887 7
Q ss_pred CCCC-HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHH
Q 048578 395 MEPN-AVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYV 440 (519)
Q Consensus 395 ~~p~-~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 440 (519)
+.|+ ..++.--..+|.- ...++.|+.-|+++.+.+++|..+-.
T Consensus 336 ~d~~dv~~l~dRAeA~l~---dE~YD~AI~dye~A~e~n~sn~~~re 379 (504)
T KOG0624|consen 336 IDPDDVQVLCDRAEAYLG---DEMYDDAIHDYEKALELNESNTRARE 379 (504)
T ss_pred cCchHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 7776 5677777788888 78899999999999999988765543
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.5e-05 Score=74.78 Aligned_cols=401 Identities=14% Similarity=0.072 Sum_probs=246.9
Q ss_pred cCchHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCC--CCCc-chHHHHHHHHHhcCChhHHHH
Q 048578 41 THLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQII--NPST-FAFNTVIRGYAEAGLGHRGIQ 117 (519)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~--~~~~-~~~~~ll~~~~~~g~~~~a~~ 117 (519)
....++...+...+... ++|...|+.=...|+.. |++++|++=-.+.+ .|+. ..|+....++.-.|++++|+.
T Consensus 16 ~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~---~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ 91 (539)
T KOG0548|consen 16 GDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASL---GSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAIL 91 (539)
T ss_pred ccHHHHHHHHHHHHccC-CCccchhcchHHHHHHH---hhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHH
Confidence 44555567777777665 34788888888999999 99999987665553 3554 479999999999999999999
Q ss_pred HHHHHHhCCCCCCc-chHHHHHHHHcCc---cc---hHHHHHHHHHhCC--CCCchhHHHHHHHH----------HHhcC
Q 048578 118 LYTQMIGNGLDPDS-FTYPILLKACGDL---RQ---VKGVHSLVVKSKD--FNSVIHSLTRLITF----------YCNFG 178 (519)
Q Consensus 118 ~~~~m~~~g~~p~~-~~~~~ll~~~~~~---~~---~~~~~~~~~~~~~--~~~~~~~~~~l~~~----------~~~~g 178 (519)
-|.+-++. .|+. ..++-+..+.... ++ -..++.-+..... .......|..++.. |....
T Consensus 92 ay~~GL~~--d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~ 169 (539)
T KOG0548|consen 92 AYSEGLEK--DPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDP 169 (539)
T ss_pred HHHHHhhc--CCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccH
Confidence 99998874 3543 3555565555111 00 0000000000000 00001112222111 11111
Q ss_pred ChHHHHHHHhcCC----------------CC------------c----------hhHHHHHHHHHHHcCChhHHHHHHHH
Q 048578 179 DVKSAQLLFDQMT----------------EK------------N----------VVTWTAMINGHVKQKNYREGIDLFRK 220 (519)
Q Consensus 179 ~~~~A~~~~~~~~----------------~~------------~----------~~~~~~li~~~~~~~~~~~a~~~~~~ 220 (519)
++..|...+.... .| | ..-...+..+..+..+++.|++.+..
T Consensus 170 r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~ 249 (539)
T KOG0548|consen 170 RLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAK 249 (539)
T ss_pred HHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 1222222221111 01 0 12345577778888899999999988
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCc------chhHHHHHHHHHHhcCCHHHHHHHHhhcCCC
Q 048578 221 MRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIIL------NDKLGAALTDMYAKCGYIEEALRVFKIVLEK 294 (519)
Q Consensus 221 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 294 (519)
..... -+..-++....++...|.+...........+.|-.. =...+..+..+|.+.++++.++..|.+...+
T Consensus 250 a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte 327 (539)
T KOG0548|consen 250 ALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTE 327 (539)
T ss_pred HHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhh
Confidence 87754 344445555566888887777776666655554211 1112223445777788899999999885432
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHH
Q 048578 295 NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDV-TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCL 373 (519)
Q Consensus 295 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 373 (519)
... -....+....+++........- +.|... -...-...+.+.|++..|+..|.++.+ ..+-|...|...
T Consensus 328 ~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk--r~P~Da~lYsNR 398 (539)
T KOG0548|consen 328 HRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK--RDPEDARLYSNR 398 (539)
T ss_pred hcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh--cCCchhHHHHHH
Confidence 111 1112233344555555444433 234332 233336678889999999999999988 346778899999
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 048578 374 VDLLCRARLLDEAYEVIRNM-PMEPNAV-LWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQ 451 (519)
Q Consensus 374 ~~~~~~~~~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 451 (519)
.-+|.+.|.+..|+.-.+.. .+.|+.. .|..=..++.. ..+++.|.+.|++.++.+|.+..+...+.+++.....
T Consensus 399 Aac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~---mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~ 475 (539)
T KOG0548|consen 399 AACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRA---MKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRG 475 (539)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhc
Confidence 99999999999999877776 5566543 45544455555 6789999999999999999988888888877775433
Q ss_pred chHHHHHHHH
Q 048578 452 WDDAGKMRRL 461 (519)
Q Consensus 452 ~~~A~~~~~~ 461 (519)
-+...++.++
T Consensus 476 ~~~~ee~~~r 485 (539)
T KOG0548|consen 476 DETPEETKRR 485 (539)
T ss_pred CCCHHHHHHh
Confidence 3444444444
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.6e-05 Score=83.44 Aligned_cols=297 Identities=9% Similarity=-0.025 Sum_probs=192.9
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCC----C----c--h--hHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH----H
Q 048578 168 TRLITFYCNFGDVKSAQLLFDQMTE----K----N--V--VTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNE----L 231 (519)
Q Consensus 168 ~~l~~~~~~~g~~~~A~~~~~~~~~----~----~--~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~ 231 (519)
......+...|++++|...+..... . + . .....+...+...|++++|...+++....-...+. .
T Consensus 413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 492 (903)
T PRK04841 413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIV 492 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHH
Confidence 3445556678999998888876532 1 1 1 11222344567899999999999987763111121 2
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCC---C--cchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-------CC----
Q 048578 232 TLVSVLSACANLGASELGKWVHEFVNKNCI---I--LNDKLGAALTDMYAKCGYIEEALRVFKIVLE-------KN---- 295 (519)
Q Consensus 232 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~---- 295 (519)
..+.+...+...|+++.|...++....... . ........+...+...|++++|...+++... ++
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 344555567789999999999888765321 1 1123455667788899999999998876532 11
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHH-
Q 048578 296 VCTWNSIIGGLAIHGCGEEAVKMFWQMQMS--GIKPD--DVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHY- 370 (519)
Q Consensus 296 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~- 370 (519)
...+..+...+...|++++|...+++.... ...+. ...+..+.......|+++.|...++..............+
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~ 652 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI 652 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence 122344556677789999999999887542 11222 2345556677888999999999988875521111111111
Q ss_pred ----HHHHHHHHhcCChHHHHHHHHhC-CCC-CCHH----HHHHHHHHHccccCCCCHHHHHHHHHHHHhhCC------C
Q 048578 371 ----GCLVDLLCRARLLDEAYEVIRNM-PME-PNAV----LWGSLLTACASADDGANVELAEIAMERLIKLEP------F 434 (519)
Q Consensus 371 ----~~l~~~~~~~~~~~~A~~~~~~~-~~~-p~~~----~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p------~ 434 (519)
...+..+...|+.+.|..++... ... .... .+..+..++.. .|+.++|...++++..... .
T Consensus 653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~---~g~~~~A~~~l~~al~~~~~~g~~~~ 729 (903)
T PRK04841 653 ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL---LGQFDEAEIILEELNENARSLRLMSD 729 (903)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHhCchHH
Confidence 11234456689999999998776 211 1111 13445556777 8899999999999886531 1
Q ss_pred CCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 435 NDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 435 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
...+...++.++.+.|+.++|...+++..+..-
T Consensus 730 ~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 730 LNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 234677888999999999999999999876553
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.6e-05 Score=74.15 Aligned_cols=391 Identities=15% Similarity=0.066 Sum_probs=235.0
Q ss_pred HHHhccCchHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCCC----C-CcchHHHHHHHHHh-c
Q 048578 36 LLQKCTHLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIIN----P-STFAFNTVIRGYAE-A 109 (519)
Q Consensus 36 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~----~-~~~~~~~ll~~~~~-~ 109 (519)
.+.-|+...-+-+.|++...-- -.....|..+...|... |.-..|..+++.-.. | ++..+-..-..|.+ -
T Consensus 332 al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saa---g~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l 407 (799)
T KOG4162|consen 332 ALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAA---GSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERL 407 (799)
T ss_pred HHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHh---ccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhch
Confidence 4444555555555555554332 33456788888888888 999999999987733 3 23334333344444 4
Q ss_pred CChhHHHHHHHHHHhC--CC--CCCcchHHHHHHHHcCccc-----------hHHHHHHHHHhCCCCC-chhHHHHHHHH
Q 048578 110 GLGHRGIQLYTQMIGN--GL--DPDSFTYPILLKACGDLRQ-----------VKGVHSLVVKSKDFNS-VIHSLTRLITF 173 (519)
Q Consensus 110 g~~~~a~~~~~~m~~~--g~--~p~~~~~~~ll~~~~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~~~l~~~ 173 (519)
+.+++++..-.+.... |. ...+..|..+--+|+..-. -.+.++.+.+.-.+.| |+.+...+.--
T Consensus 408 ~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq 487 (799)
T KOG4162|consen 408 KLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQ 487 (799)
T ss_pred hhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 6777777776666652 11 1222334433333332211 2233333333321222 23333344445
Q ss_pred HHhcCChHHHHHHHhcCCC----CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHH
Q 048578 174 YCNFGDVKSAQLLFDQMTE----KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELG 249 (519)
Q Consensus 174 ~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 249 (519)
|+..++++.|.+..++... .++..|..+.-++...+++.+|+.+.+.....- ..|......-+..-...++.+.+
T Consensus 488 ~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i~~~~~~~e~~ 566 (799)
T KOG4162|consen 488 YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHIELTFNDREEA 566 (799)
T ss_pred HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhhhhhcccHHHH
Confidence 7888999999998887654 567899999999999999999999998876541 11111111112222234444444
Q ss_pred HHHHHHHHH---------------------cCC-------CcchhHHHHHHHHHHhcC---CHHHHHHHHhhcCCCC---
Q 048578 250 KWVHEFVNK---------------------NCI-------ILNDKLGAALTDMYAKCG---YIEEALRVFKIVLEKN--- 295 (519)
Q Consensus 250 ~~~~~~~~~---------------------~~~-------~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~--- 295 (519)
......+.. .|. ...+.++..+.......+ ..+..+..+.....++
T Consensus 567 l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~ 646 (799)
T KOG4162|consen 567 LDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLW 646 (799)
T ss_pred HHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchH
Confidence 433322221 010 011112222211111111 0111111111111222
Q ss_pred ---hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHH
Q 048578 296 ---VCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGC 372 (519)
Q Consensus 296 ---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 372 (519)
...|......+.+.+..++|...+.+..... .-....|......+...|.+++|.+.|..... --+.++.+..+
T Consensus 647 ~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~A 723 (799)
T KOG4162|consen 647 YLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTA 723 (799)
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHH
Confidence 2346667778889999999988888776532 33445777777888899999999999988876 23334678889
Q ss_pred HHHHHHhcCChHHHHH--HHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCc
Q 048578 373 LVDLLCRARLLDEAYE--VIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDG 437 (519)
Q Consensus 373 l~~~~~~~~~~~~A~~--~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 437 (519)
+..++.+.|+..-|.. ++..+ .+.| +...|..+...+.. .|+.+.|.+.|..+.++.+.+|.
T Consensus 724 la~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~---~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 724 LAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKK---LGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH---ccchHHHHHHHHHHHhhccCCCc
Confidence 9999999998777776 88777 7777 56789999999999 99999999999999999876654
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.4e-07 Score=81.03 Aligned_cols=184 Identities=10% Similarity=-0.055 Sum_probs=113.8
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC---h---hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCH-HHH
Q 048578 263 LNDKLGAALTDMYAKCGYIEEALRVFKIVLEKN---V---CTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIK-PDD-VTL 334 (519)
Q Consensus 263 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~-p~~-~~~ 334 (519)
.....+..+...+...|++++|...|+++...+ . .++..+..++...|++++|...++++.+..-. |.. .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 344556666667777777777777777664421 1 34566667777777777777777777654211 111 134
Q ss_pred HHHHHHHhcc--------CcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHH
Q 048578 335 IAVLTACSHA--------GLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLL 406 (519)
Q Consensus 335 ~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll 406 (519)
..+..++... |+++.|.+.|+.+.+. .+.+...+..+..... ...... .....+.
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~~~~-----------~~~~~~a 173 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRNRLA-----------GKELYVA 173 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHHHHH-----------HHHHHHH
Confidence 4444455443 5667777777777652 1122222222111100 000000 0011344
Q ss_pred HHHccccCCCCHHHHHHHHHHHHhhCCCC---CchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048578 407 TACASADDGANVELAEIAMERLIKLEPFN---DGNYVLMSNIYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 407 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
..+.. .|++++|...++++++..|++ +.++..++.++.+.|++++|..+++.+..+.
T Consensus 174 ~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 174 RFYLK---RGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHH---cCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 55777 899999999999999987764 4789999999999999999999999887654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.9e-07 Score=78.05 Aligned_cols=149 Identities=13% Similarity=0.118 Sum_probs=113.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCC
Q 048578 303 IGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARL 382 (519)
Q Consensus 303 ~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 382 (519)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+ .-+.+...|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCC
Confidence 3456677777776544433221 11 012236677788888888776 456788899999999999999
Q ss_pred hHHHHHHHHhC-CCCC-CHHHHHHHHHHH-ccccCCCC--HHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHH
Q 048578 383 LDEAYEVIRNM-PMEP-NAVLWGSLLTAC-ASADDGAN--VELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGK 457 (519)
Q Consensus 383 ~~~A~~~~~~~-~~~p-~~~~~~~ll~~~-~~~~~~~~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 457 (519)
+++|...|++. .+.| +...+..+..++ .. .|+ .++|.++++++++.+|.++.++..++..+.+.|++++|..
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~---~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~ 165 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQ---AGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIE 165 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHH
Confidence 99999999988 6667 445666666653 55 555 5999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCc
Q 048578 458 MRRLMKERNIV 468 (519)
Q Consensus 458 ~~~~m~~~~~~ 468 (519)
.++++.+...+
T Consensus 166 ~~~~aL~l~~~ 176 (198)
T PRK10370 166 LWQKVLDLNSP 176 (198)
T ss_pred HHHHHHhhCCC
Confidence 99999876554
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.6e-05 Score=73.61 Aligned_cols=313 Identities=11% Similarity=-0.031 Sum_probs=189.6
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCCHHHHH-HHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHH--
Q 048578 195 VVTWTAMINGHVKQKNYREGIDLFRKMRDSG-VEVNELTLV-SVLSACANLGASELGKWVHEFVNKNCIILNDKLGAA-- 270 (519)
Q Consensus 195 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 270 (519)
...|..+...+...|+.+.+.+.+....+.. ..++..... .....+...|+++.|..+++...+.. |.+...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 3456677777888888888777776665432 122332222 22334567899999999999988874 444444442
Q ss_pred -HHHHHHhcCCHHHHHHHHhhcCCCCh---hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 048578 271 -LTDMYAKCGYIEEALRVFKIVLEKNV---CTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGL 346 (519)
Q Consensus 271 -l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 346 (519)
........+..+.+.+.+......+. .....+...+...|++++|...+++..+.. +.+...+..+..++...|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 12222234556666666655333222 334455668889999999999999998864 4445678888999999999
Q ss_pred HHHHHHHHHHcHHhcCCCCCh--hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC--C-HHHH-H--HHHHHHccccCCCC
Q 048578 347 IEKGKEIFYNMRRDYKVEPNV--KHYGCLVDLLCRARLLDEAYEVIRNM-PMEP--N-AVLW-G--SLLTACASADDGAN 417 (519)
Q Consensus 347 ~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p--~-~~~~-~--~ll~~~~~~~~~~~ 417 (519)
+++|...+++........|+. ..|..+...+...|++++|..++++. ...| . .... + .++.-+.. .|.
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~g~ 240 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLEL---AGH 240 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHh---cCC
Confidence 999999999988732222332 34557889999999999999999997 3333 2 2111 1 22222333 333
Q ss_pred HHHHHHH---HHHHHhhCCCC--CchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccC-CcccEEEECCEEEEEEeCCCC
Q 048578 418 VELAEIA---MERLIKLEPFN--DGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKN-PGCSVIEINDVVHEFMVGDGR 491 (519)
Q Consensus 418 ~~~a~~~---~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 491 (519)
.+.+.+. ........|.. .......+.++...|+.++|.++++.+........ .+..+..+...+ ........
T Consensus 241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~-l~A~~~~~ 319 (355)
T cd05804 241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPL-AEALYAFA 319 (355)
T ss_pred CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHH-HHHHHHHH
Confidence 3333332 22211111221 22223677788899999999999999876443310 000010001000 00112235
Q ss_pred CCChhHHHHHHHHHHHHHHhcc
Q 048578 492 HPCSEEIYSMLEYVAISLREEC 513 (519)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~ 513 (519)
.++.+++.+.+.+.......-|
T Consensus 320 ~g~~~~A~~~L~~al~~a~~~g 341 (355)
T cd05804 320 EGNYATALELLGPVRDDLARIG 341 (355)
T ss_pred cCCHHHHHHHHHHHHHHHHHhC
Confidence 6788888888888877765555
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.1e-06 Score=90.76 Aligned_cols=201 Identities=13% Similarity=0.107 Sum_probs=167.9
Q ss_pred CcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC--------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HH
Q 048578 262 ILNDKLGAALTDMYAKCGYIEEALRVFKIVLEK--------NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPD-DV 332 (519)
Q Consensus 262 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~ 332 (519)
|-+...|-..|......++.+.|.++.+++... -...|.++++.-..-|.-+...++|+++.+- .| ..
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchHH
Confidence 455667777888888889999999998887542 2357888888777788888899999998762 34 34
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC---CHHHHHHHHHH
Q 048578 333 TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP---NAVLWGSLLTA 408 (519)
Q Consensus 333 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p---~~~~~~~ll~~ 408 (519)
.|..|...|.+.+..++|.++++.|.++++ .....|..++..+.+..+-+.|..++.+. ..-| ......-.+..
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 788999999999999999999999999665 66789999999999999999999999887 3334 33455555666
Q ss_pred HccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccC
Q 048578 409 CASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKN 470 (519)
Q Consensus 409 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 470 (519)
-.+ .|+.+++..+|+..+...|.-...|+.+++.-.++|+.+.++.+|++....++.+.
T Consensus 1610 EFk---~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1610 EFK---YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred Hhh---cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 667 89999999999999999999999999999999999999999999999999998764
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.75 E-value=0.00017 Score=72.87 Aligned_cols=209 Identities=16% Similarity=0.170 Sum_probs=149.3
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCC--CcchhHHHH---------------------------HHHHHHhcC
Q 048578 229 NELTLVSVLSACANLGASELGKWVHEFVNKNCI--ILNDKLGAA---------------------------LTDMYAKCG 279 (519)
Q Consensus 229 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~---------------------------l~~~~~~~g 279 (519)
|+...+....++...+-+.+..++++++.-.+- ..+...-+. +.......+
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~ 1062 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQ 1062 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhh
Confidence 555666677777777877777777777653321 111222222 222334445
Q ss_pred CHHHHHHHHhhcCC-------------------------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 048578 280 YIEEALRVFKIVLE-------------------------KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTL 334 (519)
Q Consensus 280 ~~~~a~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 334 (519)
-+++|..+|++... ..+..|..+..+-.+.|.+.+|++-|-+. -|...|
T Consensus 1063 LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y 1136 (1666)
T KOG0985|consen 1063 LYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNY 1136 (1666)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHH
Confidence 66777777765411 13457888888888899988888776542 356789
Q ss_pred HHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHccccC
Q 048578 335 IAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADD 414 (519)
Q Consensus 335 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 414 (519)
.-+++.+.+.|.|++-.+++...+++ .-.|.+. +.||-+|++.++..+..+++. .||......+..-|..
T Consensus 1137 ~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~--- 1206 (1666)
T KOG0985|consen 1137 LEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFE--- 1206 (1666)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhh---
Confidence 99999999999999999999888774 5556554 478999999999988777663 4788888888888888
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 048578 415 GANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRL 461 (519)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (519)
.+.++.|.-+|.. .+.|..|+..+...|++..|...-++
T Consensus 1207 ~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1207 EKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARK 1245 (1666)
T ss_pred hhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 8888888877763 66778888888888888777665544
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=8.3e-05 Score=73.36 Aligned_cols=355 Identities=10% Similarity=0.042 Sum_probs=200.5
Q ss_pred CCchhHHHHHH--HHHhhcCCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC-C--------CC
Q 048578 60 NRTISDTQLAK--LIESLVNSSQIAYAHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGN-G--------LD 128 (519)
Q Consensus 60 ~~~~~~~~ll~--~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g--------~~ 128 (519)
.|+.+--++++ .|... |+.+.|.+..+.+... ..|..|.+.|.+.++.+-|.-.+-.|... | -.
T Consensus 724 Cd~~TRkaml~FSfyvti---G~MD~AfksI~~IkS~--~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTI---GSMDAAFKSIQFIKSD--SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred cCHHHHHhhhceeEEEEe---ccHHHHHHHHHHHhhh--HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 46666666665 34555 8888888777776543 24777777777777777666555555332 1 11
Q ss_pred CCcchHHHHHHHHcCccchHHHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC-CchhHHHHHHHHHHH
Q 048578 129 PDSFTYPILLKACGDLRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTE-KNVVTWTAMINGHVK 207 (519)
Q Consensus 129 p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~ 207 (519)
|+... .-+.......|..+++..+..+.. -|..|-..|-..|.+++|.++-+.-.+ .=..||.....-+-.
T Consensus 799 ~~e~e-akvAvLAieLgMlEeA~~lYr~ck-------R~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 799 GEEDE-AKVAVLAIELGMLEEALILYRQCK-------RYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEA 870 (1416)
T ss_pred Ccchh-hHHHHHHHHHhhHHHHHHHHHHHH-------HHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHh
Confidence 22111 111111123344555555554443 244455566677888888776554332 112355556666666
Q ss_pred cCChhHHHHHHHHHH----------hCC---------CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHH
Q 048578 208 QKNYREGIDLFRKMR----------DSG---------VEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLG 268 (519)
Q Consensus 208 ~~~~~~a~~~~~~m~----------~~~---------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 268 (519)
.++.+.|++.|++.. ... -.-|...|..........|+.|.|..+|....+ |
T Consensus 871 r~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~ 941 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------Y 941 (1416)
T ss_pred hccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------h
Confidence 777777777766531 111 012444555555555667777777777776655 3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc----
Q 048578 269 AALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHA---- 344 (519)
Q Consensus 269 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~---- 344 (519)
-++++..+-.|+.++|-++-++ ..|..+...+...|-..|++.+|..+|.+.+. |...|+.|-..
T Consensus 942 fs~VrI~C~qGk~~kAa~iA~e--sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d 1010 (1416)
T KOG3617|consen 942 FSMVRIKCIQGKTDKAARIAEE--SGDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKD 1010 (1416)
T ss_pred hhheeeEeeccCchHHHHHHHh--cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHH
Confidence 3455666667777777776553 23566677788888888888888888877652 22333322221
Q ss_pred -----------CcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHh---------C--CC--CCCHH
Q 048578 345 -----------GLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRN---------M--PM--EPNAV 400 (519)
Q Consensus 345 -----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---------~--~~--~p~~~ 400 (519)
.+.-.|..+|++.-- -+..-+..|.+.|.+.+|+++--+ + .+ ..|+.
T Consensus 1011 ~L~nlal~s~~~d~v~aArYyEe~g~---------~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ 1081 (1416)
T KOG3617|consen 1011 RLANLALMSGGSDLVSAARYYEELGG---------YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPK 1081 (1416)
T ss_pred HHHHHHhhcCchhHHHHHHHHHHcch---------hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHH
Confidence 223334444444321 112234556777777777664211 1 12 23555
Q ss_pred HHHHHHHHHccccCCCCHHHHHHHHHHHHh----------------------hCCC---------CCchHHHHHHHHHhc
Q 048578 401 LWGSLLTACASADDGANVELAEIAMERLIK----------------------LEPF---------NDGNYVLMSNIYAAK 449 (519)
Q Consensus 401 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~----------------------~~p~---------~~~~~~~l~~~~~~~ 449 (519)
..+.-...+.. ..++++|..++-.+.+ +.|. -...+..+++.+.++
T Consensus 1082 ll~RcadFF~~---~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQ 1158 (1416)
T KOG3617|consen 1082 LLRRCADFFEN---NQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQ 1158 (1416)
T ss_pred HHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhc
Confidence 55555555666 6677777766554432 1111 123667889999999
Q ss_pred CCchHHHHHH
Q 048578 450 AQWDDAGKMR 459 (519)
Q Consensus 450 g~~~~A~~~~ 459 (519)
|.|.-|.+-|
T Consensus 1159 G~Yh~AtKKf 1168 (1416)
T KOG3617|consen 1159 GAYHAATKKF 1168 (1416)
T ss_pred cchHHHHHHH
Confidence 9887776543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.70 E-value=0.00012 Score=73.97 Aligned_cols=386 Identities=13% Similarity=0.121 Sum_probs=214.9
Q ss_pred CCcccHHHHHHhccCchHHHHHHHHHHHhcCC--CCchhHHHHHHHHHhhcCCCChHHHHHHHhcCC-CCCcc-----hH
Q 048578 28 TKSHHHLPLLQKCTHLVQFKQVHAQIIKASFD--NRTISDTQLAKLIESLVNSSQIAYAHLVFNQII-NPSTF-----AF 99 (519)
Q Consensus 28 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~-~~~~~-----~~ 99 (519)
.|...|..+|.--. ..-+++.++....+++ .|+...+.-++++... +-..+-.++++++. ++++. .-
T Consensus 950 ~D~~LW~~VL~e~n--~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMta---dLp~eLIELLEKIvL~~S~Fse~~nLQ 1024 (1666)
T KOG0985|consen 950 SDPDLWAKVLNEEN--PYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTA---DLPNELIELLEKIVLDNSVFSENRNLQ 1024 (1666)
T ss_pred cChHHHHHHHhccC--hHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhc---CCcHHHHHHHHHHhcCCcccccchhhh
Confidence 45556666653321 1225677777777665 4566677778888887 88888899998883 34333 23
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHHHHHhCCCCCchhHHHHHHHHHHhcCC
Q 048578 100 NTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGD 179 (519)
Q Consensus 100 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 179 (519)
|.+|-...+. +..+..+..+++-..+. |+.. ..+...+-.++++..+.+.. .+....+.|+. .-+.
T Consensus 1025 nLLiLtAika-d~trVm~YI~rLdnyDa-~~ia------~iai~~~LyEEAF~ifkkf~---~n~~A~~VLie---~i~~ 1090 (1666)
T KOG0985|consen 1025 NLLILTAIKA-DRTRVMEYINRLDNYDA-PDIA------EIAIENQLYEEAFAIFKKFD---MNVSAIQVLIE---NIGS 1090 (1666)
T ss_pred hhHHHHHhhc-ChHHHHHHHHHhccCCc-hhHH------HHHhhhhHHHHHHHHHHHhc---ccHHHHHHHHH---Hhhh
Confidence 3444433333 33345555555443211 1111 11122222444444444432 22222222222 2244
Q ss_pred hHHHHHHHhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 048578 180 VKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKN 259 (519)
Q Consensus 180 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 259 (519)
++.|.++-++..+| ..|..+..+-.+.|...+|++-|-+. .|+..|..+++.+.+.|.|++..+++...++.
T Consensus 1091 ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1091 LDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred HHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 55555554444433 34555555555555555555544322 24455555555555556665555555555554
Q ss_pred CCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----------------------CChhhHHHHHHHHHHcCChHHHH
Q 048578 260 CIILNDKLGAALTDMYAKCGYIEEALRVFKIVLE-----------------------KNVCTWNSIIGGLAIHGCGEEAV 316 (519)
Q Consensus 260 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----------------------~~~~~~~~l~~~~~~~g~~~~a~ 316 (519)
...|.. -+.|+-+|++.+++.+.++++..--. .++.-|..+...+...|++..|.
T Consensus 1163 ~~E~~i--d~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AV 1240 (1666)
T KOG0985|consen 1163 VREPYI--DSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAV 1240 (1666)
T ss_pred hcCccc--hHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 433322 23455555555555554444321100 14556777788888888888887
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 048578 317 KMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PM 395 (519)
Q Consensus 317 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~ 395 (519)
+.-++. .+..||..+-.+|...+.+.-|. +.. .++-....-..-++.-|-..|-+++.+.+++.. |+
T Consensus 1241 D~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ-----iCG-L~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGL 1308 (1666)
T KOG0985|consen 1241 DAARKA------NSTKTWKEVCFACVDKEEFRLAQ-----ICG-LNIIVHADELEELIEYYQDRGYFEELISLLEAGLGL 1308 (1666)
T ss_pred HHhhhc------cchhHHHHHHHHHhchhhhhHHH-----hcC-ceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhch
Confidence 665442 35668888888888776654442 211 122234455677899999999999999999887 65
Q ss_pred CC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHh-hC-C------CCCchHHHHHHHHHhcCCchHHHHH
Q 048578 396 EP-NAVLWGSLLTACASADDGANVELAEIAMERLIK-LE-P------FNDGNYVLMSNIYAAKAQWDDAGKM 458 (519)
Q Consensus 396 ~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~-~~-p------~~~~~~~~l~~~~~~~g~~~~A~~~ 458 (519)
+. ....|.-|.-.|.+ . ++++..+.++-... .+ | +....|..+...|.+-..|+.|.-.
T Consensus 1309 ERAHMgmfTELaiLYsk---y-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~t 1376 (1666)
T KOG0985|consen 1309 ERAHMGMFTELAILYSK---Y-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAALT 1376 (1666)
T ss_pred hHHHHHHHHHHHHHHHh---c-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 53 34456666666666 2 45666666555443 12 2 1456788888888888888877543
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.7e-05 Score=77.08 Aligned_cols=35 Identities=23% Similarity=0.206 Sum_probs=19.4
Q ss_pred CChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHH
Q 048578 79 SQIAYAHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQL 118 (519)
Q Consensus 79 ~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 118 (519)
+++.+|+.+|-+-. .-...|..|....+|++|+.+
T Consensus 545 kkfk~ae~ifleqn-----~te~aigmy~~lhkwde~i~l 579 (1636)
T KOG3616|consen 545 KKFKEAEMIFLEQN-----ATEEAIGMYQELHKWDEAIAL 579 (1636)
T ss_pred hhhhHHHHHHHhcc-----cHHHHHHHHHHHHhHHHHHHH
Confidence 45777777775421 112345555555666666654
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.2e-05 Score=74.15 Aligned_cols=180 Identities=11% Similarity=0.006 Sum_probs=108.6
Q ss_pred HHHHHHHHhhcCCC---ChhhHHHHHHHHHHcCCh--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 048578 281 IEEALRVFKIVLEK---NVCTWNSIIGGLAIHGCG--EEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFY 355 (519)
Q Consensus 281 ~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~--~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 355 (519)
++++++.++++.+. +..+|+.....+.+.|+. ++++.+++++.+.. +-|..+|.....++...|+++++++.++
T Consensus 88 l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~ 166 (320)
T PLN02789 88 LEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCH 166 (320)
T ss_pred HHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 45555555554332 333444443334444432 45666666666543 3345567666666777777777777777
Q ss_pred HcHHhcCCCCChhHHHHHHHHHHhc---CCh----HHHHHHHHhC-CCCC-CHHHHHHHHHHHccccC-CCCHHHHHHHH
Q 048578 356 NMRRDYKVEPNVKHYGCLVDLLCRA---RLL----DEAYEVIRNM-PMEP-NAVLWGSLLTACASADD-GANVELAEIAM 425 (519)
Q Consensus 356 ~~~~~~~~~~~~~~~~~l~~~~~~~---~~~----~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~-~~~~~~a~~~~ 425 (519)
++.+. -+.+...|+.....+.+. |.. +++++...++ ...| |...|+.+...+...++ .++..+|...+
T Consensus 167 ~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~ 244 (320)
T PLN02789 167 QLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVC 244 (320)
T ss_pred HHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHH
Confidence 77662 234555666555555443 222 3556665444 5566 44566666666655211 24456688888
Q ss_pred HHHHhhCCCCCchHHHHHHHHHhcC------------------CchHHHHHHHHHH
Q 048578 426 ERLIKLEPFNDGNYVLMSNIYAAKA------------------QWDDAGKMRRLMK 463 (519)
Q Consensus 426 ~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~m~ 463 (519)
.++.+.+|.++.+...|+.+|.... ..++|.++++.+.
T Consensus 245 ~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 245 LEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 8888888888899999999998642 2367888888884
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.68 E-value=5e-05 Score=73.91 Aligned_cols=343 Identities=14% Similarity=0.069 Sum_probs=202.1
Q ss_pred CCCChHHHHHHHhcCCCCCcc--hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHHH
Q 048578 77 NSSQIAYAHLVFNQIINPSTF--AFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLV 154 (519)
Q Consensus 77 ~~~~~~~A~~~~~~~~~~~~~--~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ 154 (519)
..++|.+|+.+++.+...++. -|..+...|+..|+++.|.++|.+.- .++..+..|.+.|+.+++++..
T Consensus 744 ~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla 814 (1636)
T KOG3616|consen 744 GAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLA 814 (1636)
T ss_pred hhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHH
Confidence 336777777777776543332 35666778888888888888886542 3566778888888888888888
Q ss_pred HHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 048578 155 VKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLV 234 (519)
Q Consensus 155 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 234 (519)
.+.-+.......|-+-..-+-+.|++.+|++++-.+..|+. .|..|-+.|..+..+++.++-.-. .-..|-.
T Consensus 815 ~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~ 886 (1636)
T KOG3616|consen 815 EECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHK 886 (1636)
T ss_pred HHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhChh---hhhHHHH
Confidence 77754455566777777777888888888888888777764 367788888888888887654211 1223555
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh-----hHH---------
Q 048578 235 SVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVC-----TWN--------- 300 (519)
Q Consensus 235 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~--------- 300 (519)
.+..-+...|++..|+.-|-+... |.+-+++|...+-+++|.++-+.--..|.. .|.
T Consensus 887 ~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaav 957 (1636)
T KOG3616|consen 887 HFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAV 957 (1636)
T ss_pred HHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHH
Confidence 566667778888888776654433 556677788888888887776543222221 111
Q ss_pred ----------HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcC--C-----
Q 048578 301 ----------SIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYK--V----- 363 (519)
Q Consensus 301 ----------~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~----- 363 (519)
.-+...+..+-++-|.++-+-..+.. .|... ..+..-+...|+++.|.+.+-+..+-.. +
T Consensus 958 kllnk~gll~~~id~a~d~~afd~afdlari~~k~k-~~~vh--lk~a~~ledegk~edaskhyveaiklntynitwcqa 1034 (1636)
T KOG3616|consen 958 KLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK-MGEVH--LKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQA 1034 (1636)
T ss_pred HHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc-Cccch--hHHhhhhhhccchhhhhHhhHHHhhcccccchhhhc
Confidence 11122233444444444443333221 22222 2233345677888888877766655100 0
Q ss_pred CCChhHH---------HHHHHHHHhcCChHHHHHHHHhCCCCCCH--HHHHHHHHHHccccCCCCHHHHHHHHHHHHhhC
Q 048578 364 EPNVKHY---------GCLVDLLCRARLLDEAYEVIRNMPMEPNA--VLWGSLLTACASADDGANVELAEIAMERLIKLE 432 (519)
Q Consensus 364 ~~~~~~~---------~~l~~~~~~~~~~~~A~~~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~ 432 (519)
.|+..-. ..-+.++.+.++|..|.++-+.- .|+. ..+..-.++... .|++.+|..++-++ ..
T Consensus 1035 vpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h--~~~~l~dv~tgqar~aie---e~d~~kae~fllra--nk 1107 (1636)
T KOG3616|consen 1035 VPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAH--CEDLLADVLTGQARGAIE---EGDFLKAEGFLLRA--NK 1107 (1636)
T ss_pred ccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhh--ChhhhHHHHhhhhhcccc---ccchhhhhhheeec--CC
Confidence 0110000 01223444555555555554443 1221 122222333444 67777777765432 22
Q ss_pred CCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 048578 433 PFNDGNYVLMSNIYAAKAQWDDAGKMRRL 461 (519)
Q Consensus 433 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (519)
|+ ..++.|...+.|.+|+++.+.
T Consensus 1108 p~------i~l~yf~e~~lw~dalri~kd 1130 (1636)
T KOG3616|consen 1108 PD------IALNYFIEAELWPDALRIAKD 1130 (1636)
T ss_pred Cc------hHHHHHHHhccChHHHHHHHh
Confidence 43 445667778888888876543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.1e-06 Score=81.30 Aligned_cols=218 Identities=17% Similarity=0.106 Sum_probs=168.0
Q ss_pred CCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048578 261 IILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTA 340 (519)
Q Consensus 261 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 340 (519)
.+|-...-..+...+...|-...|..+|++ ...|...+.+|...|+..+|..+..+-.+ -+||...|..+.+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Er-----lemw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFER-----LEMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHh-----HHHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 456666777888999999999999999995 46788899999999999999999988877 38899999999998
Q ss_pred HhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCH
Q 048578 341 CSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANV 418 (519)
Q Consensus 341 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~ 418 (519)
....--+++|.++++....+ .-..+.....+.+++.++.+.|+.- .+.| ...+|-.+..+..+ .+++
T Consensus 467 ~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALq---lek~ 535 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQ---LEKE 535 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHH---Hhhh
Confidence 88888889999988776552 1112222333478899999888875 5555 45577777777777 8899
Q ss_pred HHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCCChhHH
Q 048578 419 ELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPGCSVIEINDVVHEFMVGDGRHPCSEEI 498 (519)
Q Consensus 419 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (519)
+.|.+.|.....++|++...|+.+..+|.+.|+-.+|...+++..+.+..+ |-.+.+.+. -....+..+++
T Consensus 536 q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~-----w~iWENyml----vsvdvge~eda 606 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH-----WQIWENYML----VSVDVGEFEDA 606 (777)
T ss_pred HHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC-----Ceeeechhh----hhhhcccHHHH
Confidence 999999999999999999999999999999999999999999988877554 433343222 22245566666
Q ss_pred HHHHHHH
Q 048578 499 YSMLEYV 505 (519)
Q Consensus 499 ~~~~~~~ 505 (519)
.+...++
T Consensus 607 ~~A~~rl 613 (777)
T KOG1128|consen 607 IKAYHRL 613 (777)
T ss_pred HHHHHHH
Confidence 6666665
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.6e-06 Score=80.49 Aligned_cols=248 Identities=11% Similarity=0.015 Sum_probs=184.1
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHH
Q 048578 203 NGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIE 282 (519)
Q Consensus 203 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 282 (519)
.-+.+.|++.+|.-.|+..++.. +-+...|..|.......++-..|...+.+.++.. +.|..+.-.|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 34678899999999999988875 3366788888888889898889999998888876 677888889999999999999
Q ss_pred HHHHHHhhcCCCCh-hhHHHHH---------HHHHHcCChHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 048578 283 EALRVFKIVLEKNV-CTWNSII---------GGLAIHGCGEEAVKMFWQM-QMSGIKPDDVTLIAVLTACSHAGLIEKGK 351 (519)
Q Consensus 283 ~a~~~~~~~~~~~~-~~~~~l~---------~~~~~~g~~~~a~~~~~~m-~~~g~~p~~~~~~~l~~~~~~~g~~~~a~ 351 (519)
+|...++.-+.... ..|.... ..+.....+....++|-++ ...+..+|......|.-.|.-.|++++|.
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 99998876532110 0000000 1111122233444455444 45565577778888888899999999999
Q ss_pred HHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHccccCCCCHHHHHHHHHHHH
Q 048578 352 EIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPNAV-LWGSLLTACASADDGANVELAEIAMERLI 429 (519)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~~~~~~~~~a~~~~~~~~ 429 (519)
+.|+.+.. --+-|...||.|.-.++...+.++|+..|.+. .++|+-+ +...|.-.|.. .|.+++|.+.|-.++
T Consensus 451 Dcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mN---lG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 451 DCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMN---LGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhh---hhhHHHHHHHHHHHH
Confidence 99999987 23446779999999999999999999999998 8888754 66667778999 999999999999988
Q ss_pred hhCCC----------CCchHHHHHHHHHhcCCchHHHH
Q 048578 430 KLEPF----------NDGNYVLMSNIYAAKAQWDDAGK 457 (519)
Q Consensus 430 ~~~p~----------~~~~~~~l~~~~~~~g~~~~A~~ 457 (519)
.+.+. +..+|..|=.++.-.++.|-+.+
T Consensus 526 ~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 526 SMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 76543 12366666666666666654444
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.66 E-value=0.00029 Score=66.52 Aligned_cols=418 Identities=12% Similarity=0.103 Sum_probs=231.2
Q ss_pred CCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHH
Q 048578 59 DNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIIN---PSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYP 135 (519)
Q Consensus 59 ~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 135 (519)
|.|..+|+.|+.-+.. ..++++...++++.. .+...|..-|..-.+..+++....+|.+....-+ +...|.
T Consensus 17 P~di~sw~~lire~qt----~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~ 90 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQT----QPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWK 90 (656)
T ss_pred CccHHHHHHHHHHHcc----CCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHH
Confidence 5678889998886654 589999999998854 3557788899999999999999999999887543 344555
Q ss_pred HHHHHHcCccc--------hHHHHHHHHHhCCCCC-chhHHHHHHHH---------HHhcCChHHHHHHHhcCCC-C---
Q 048578 136 ILLKACGDLRQ--------VKGVHSLVVKSKDFNS-VIHSLTRLITF---------YCNFGDVKSAQLLFDQMTE-K--- 193 (519)
Q Consensus 136 ~ll~~~~~~~~--------~~~~~~~~~~~~~~~~-~~~~~~~l~~~---------~~~~g~~~~A~~~~~~~~~-~--- 193 (519)
.-+.-..+.+. .-++++......++.+ +...|+..+.. |....+++...++++++.. |
T Consensus 91 lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~n 170 (656)
T KOG1914|consen 91 LYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHN 170 (656)
T ss_pred HHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcccc
Confidence 44443322222 3344444443332444 23345544433 3444566777788887764 2
Q ss_pred ------chhHHHHHHHH-------HHHcCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHhccCChHH--HHHHHHHH
Q 048578 194 ------NVVTWTAMING-------HVKQKNYREGIDLFRKMRDS--GVEVNELTLVSVLSACANLGASEL--GKWVHEFV 256 (519)
Q Consensus 194 ------~~~~~~~li~~-------~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~~~~~~--a~~~~~~~ 256 (519)
|-..|..=|.. --+...+-.|.++++++... |..-...+ .-..|-.++ ..+++...
T Consensus 171 lEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~-------vp~~~T~~e~~qv~~W~n~ 243 (656)
T KOG1914|consen 171 LEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA-------VPPKGTKDEIQQVELWKNW 243 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC-------CCCCCChHHHHHHHHHHHH
Confidence 11222211111 11233455666666665431 21111000 000111111 11112111
Q ss_pred HH---c-CCC-cchh-HHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHH-------HHHHHHcCC-------hHHHH
Q 048578 257 NK---N-CII-LNDK-LGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSI-------IGGLAIHGC-------GEEAV 316 (519)
Q Consensus 257 ~~---~-~~~-~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l-------~~~~~~~g~-------~~~a~ 316 (519)
.+ . ++. .+.. +-+.++-+| ++++..+- -.+..|.-- -+.+...|+ -+++.
T Consensus 244 I~wEksNpL~t~~~~~~~~Rv~yay------eQ~ll~l~----~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~ 313 (656)
T KOG1914|consen 244 IKWEKSNPLRTLDGTMLTRRVMYAY------EQCLLYLG----YHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAA 313 (656)
T ss_pred HHHHhcCCcccccccHHHHHHHHHH------HHHHHHHh----cCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHH
Confidence 11 1 111 0000 000111111 00110000 001111100 011222222 35566
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHh---ccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 048578 317 KMFWQMQMSGIKPDDVTLIAVLTACS---HAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM 393 (519)
Q Consensus 317 ~~~~~m~~~g~~p~~~~~~~l~~~~~---~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 393 (519)
.+++..+..-..-+..+|..+...-- +-...+....+++++.......|+ .+|..+++.-.+..-++.|..+|.+.
T Consensus 314 ~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~ka 392 (656)
T KOG1914|consen 314 SIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKA 392 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHH
Confidence 66666554322334444444443211 112366677778887775555555 46778888888888999999999998
Q ss_pred ---CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcc
Q 048578 394 ---PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVK 469 (519)
Q Consensus 394 ---~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 469 (519)
+..+ +....++++.-++ +++.+.|.++|+-.++..++++..-...+..+...|+-+.|..+|++....++.+
T Consensus 393 R~~~r~~hhVfVa~A~mEy~c----skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~ 468 (656)
T KOG1914|consen 393 REDKRTRHHVFVAAALMEYYC----SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSA 468 (656)
T ss_pred hhccCCcchhhHHHHHHHHHh----cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCCh
Confidence 4445 6678888888877 4789999999999999999999999999999999999999999999999886665
Q ss_pred CCcccEEEECCEEEEEEeCCCCCCChhHHHHHHHHHHHHHH
Q 048578 470 NPGCSVIEINDVVHEFMVGDGRHPCSEEIYSMLEYVAISLR 510 (519)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (519)
+...-. +. .++.-...-++...++++-.+.....+
T Consensus 469 ~ks~~I--w~----r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 469 DKSKEI--WD----RMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred hhhHHH--HH----HHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 422110 01 112222334555666666555544433
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1e-06 Score=71.28 Aligned_cols=122 Identities=11% Similarity=-0.026 Sum_probs=79.0
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 048578 317 KMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PM 395 (519)
Q Consensus 317 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~ 395 (519)
.++++..+ +.|+. +..+..++...|++++|...|+.+.. --+.+...|..+..++...|++++|...|++. .+
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34444444 23443 34455666777777777777777765 33445666777777777777777777777776 44
Q ss_pred CC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 048578 396 EP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYA 447 (519)
Q Consensus 396 ~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 447 (519)
.| +...+..+..++.. .|+.++|...++++++..|+++..+...+.+..
T Consensus 88 ~p~~~~a~~~lg~~l~~---~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 88 DASHPEPVYQTGVCLKM---MGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCCCcHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 45 44566666666666 777777777777777777777777766655544
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.9e-05 Score=75.54 Aligned_cols=378 Identities=13% Similarity=0.092 Sum_probs=220.8
Q ss_pred CCCCcchHHHHHH--HHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccc---hHHHHHHHHHhCC-------
Q 048578 92 INPSTFAFNTVIR--GYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQ---VKGVHSLVVKSKD------- 159 (519)
Q Consensus 92 ~~~~~~~~~~ll~--~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---~~~~~~~~~~~~~------- 159 (519)
..=|..+-..++. -|..-|+.+.|.+-.+-++. ...|..+.+.|.+..+ ++-.+..|....+
T Consensus 722 e~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a 795 (1416)
T KOG3617|consen 722 ENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRA 795 (1416)
T ss_pred cccCHHHHHhhhceeEEEEeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHH
Confidence 4456666666664 56678999999888776654 4567888888877665 2222222211110
Q ss_pred -CCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048578 160 -FNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLS 238 (519)
Q Consensus 160 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 238 (519)
-.++ ..-..+.-...+.|.+++|+.+|++.++ |..|=..|-..|.|++|.++-+.--. +. =..||.....
T Consensus 796 ~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DR--iH-Lr~Tyy~yA~ 866 (1416)
T KOG3617|consen 796 QQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDR--IH-LRNTYYNYAK 866 (1416)
T ss_pred HhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccc--ee-hhhhHHHHHH
Confidence 1221 2223333445678999999999998765 44566778889999999998654321 22 2245555566
Q ss_pred HHhccCChHHHHHHHHHHHH----------cC---------CCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhH
Q 048578 239 ACANLGASELGKWVHEFVNK----------NC---------IILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTW 299 (519)
Q Consensus 239 ~~~~~~~~~~a~~~~~~~~~----------~~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 299 (519)
-+...+|.+.|.++|++... .. -..+...|.--...+-..|+.+.|+.+|... .-|
T Consensus 867 ~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A-----~D~ 941 (1416)
T KOG3617|consen 867 YLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA-----KDY 941 (1416)
T ss_pred HHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh-----hhh
Confidence 66677888888887776321 11 1123344444455555678888888888754 346
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCC----CChhHHHHHHH
Q 048578 300 NSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVE----PNVKHYGCLVD 375 (519)
Q Consensus 300 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~~l~~ 375 (519)
..++...|-.|+.++|-++-++ .-|......|.+.|...|++.+|..+|.+.+. +.-. ..-..-..|..
T Consensus 942 fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa-fsnAIRlcKEnd~~d~L~n 1014 (1416)
T KOG3617|consen 942 FSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQA-FSNAIRLCKENDMKDRLAN 1014 (1416)
T ss_pred hhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-HHHHHHHHHhcCHHHHHHH
Confidence 6777777888999998887665 33667777889999999999999999987754 1100 00000011111
Q ss_pred HH--HhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHH----------HHhhCCC-CCchHHHH
Q 048578 376 LL--CRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVELAEIAMER----------LIKLEPF-NDGNYVLM 442 (519)
Q Consensus 376 ~~--~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~----------~~~~~p~-~~~~~~~l 442 (519)
.. ....+.-.|...|++.|..- ...+..|-+ .|-+.+|.++.=+ +..++|. ||.....-
T Consensus 1015 lal~s~~~d~v~aArYyEe~g~~~-----~~AVmLYHk---AGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rc 1086 (1416)
T KOG3617|consen 1015 LALMSGGSDLVSAARYYEELGGYA-----HKAVMLYHK---AGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRC 1086 (1416)
T ss_pred HHhhcCchhHHHHHHHHHHcchhh-----hHHHHHHHh---hcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHH
Confidence 11 12223444555565553221 112223444 4444444432111 1134444 67888888
Q ss_pred HHHHHhcCCchHHHHHHHHHHh----------CCCccCCcccEEEECCEEEEEEe-CCCCCCChhHHHHHHHHHHHHHHh
Q 048578 443 SNIYAAKAQWDDAGKMRRLMKE----------RNIVKNPGCSVIEINDVVHEFMV-GDGRHPCSEEIYSMLEYVAISLRE 511 (519)
Q Consensus 443 ~~~~~~~g~~~~A~~~~~~m~~----------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 511 (519)
++.+....++++|..++...++ +|++... .+.+.+. .....++.+.-.++++++.+..-.
T Consensus 1087 adFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vte---------e~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~q 1157 (1416)
T KOG3617|consen 1087 ADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTE---------EFAELMTPTKDDMPNEQERKQVLEQVAELCLQ 1157 (1416)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhH---------HHHHhcCcCcCCCccHHHHHHHHHHHHHHHHh
Confidence 8889999999999888766543 3332211 1111221 112445566666777777665544
Q ss_pred cc
Q 048578 512 EC 513 (519)
Q Consensus 512 ~~ 513 (519)
.|
T Consensus 1158 QG 1159 (1416)
T KOG3617|consen 1158 QG 1159 (1416)
T ss_pred cc
Confidence 44
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.1e-06 Score=70.54 Aligned_cols=160 Identities=12% Similarity=0.109 Sum_probs=126.6
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHH
Q 048578 295 NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLV 374 (519)
Q Consensus 295 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 374 (519)
|... ..+-..+...|+-+....+....... -.-|.......+....+.|++..|...|.+... .-++|...|+.+.
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lg 141 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLG 141 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHH
Confidence 3344 55666777788888888887775532 133444566688888899999999999999987 6788899999999
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCc
Q 048578 375 DLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQW 452 (519)
Q Consensus 375 ~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 452 (519)
-+|.+.|+.++|..-|.+. .+.| +....+.+...+.- .|+.+.|..++.......+.+..+-..++.+....|++
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L---~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~ 218 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLL---RGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDF 218 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH---cCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCCh
Confidence 9999999999998888877 5555 34466777777777 88999999999998888888899999999999999999
Q ss_pred hHHHHHHHH
Q 048578 453 DDAGKMRRL 461 (519)
Q Consensus 453 ~~A~~~~~~ 461 (519)
++|..+...
T Consensus 219 ~~A~~i~~~ 227 (257)
T COG5010 219 REAEDIAVQ 227 (257)
T ss_pred HHHHhhccc
Confidence 999887644
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=1e-06 Score=71.35 Aligned_cols=108 Identities=8% Similarity=-0.109 Sum_probs=92.0
Q ss_pred HHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHH
Q 048578 352 EIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLI 429 (519)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~ 429 (519)
..|++..+ +.|+ .+..+...+...|++++|...|+.. .+.| +...+..+..++.. .|++++|...|+++.
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~---~g~~~~A~~~y~~Al 85 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMM---LKEYTTAINFYGHAL 85 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH---HhhHHHHHHHHHHHH
Confidence 44555544 3344 4666788999999999999999998 6666 56678888888999 999999999999999
Q ss_pred hhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 430 KLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 430 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
+.+|.++..+..++.++...|++++|...|++..+...
T Consensus 86 ~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 86 MLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999877554
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=8.9e-06 Score=79.04 Aligned_cols=216 Identities=12% Similarity=0.115 Sum_probs=177.6
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048578 160 FNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSA 239 (519)
Q Consensus 160 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 239 (519)
++|-...-..+...+...|-..+|..+|+++ ..|..+|.+|...|+..+|..+..+..+. +||+..|..+.+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhh
Confidence 4555666677888999999999999999976 47888999999999999999998888773 7899999999988
Q ss_pred HhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHHcCChHHHH
Q 048578 240 CANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEK---NVCTWNSIIGGLAIHGCGEEAV 316 (519)
Q Consensus 240 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~ 316 (519)
..+..-+++|.++.+..... .-..+.......++++++.+.|+.-.+- -..+|.....+..+.+++..|.
T Consensus 467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence 88777788888877665443 1122223334578999999999876554 3467888888889999999999
Q ss_pred HHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 048578 317 KMFWQMQMSGIKPDDV-TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM 393 (519)
Q Consensus 317 ~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 393 (519)
+.|..-.. ..||.. .|+.+-.+|.+.|+-.+|...+.+..+ ++ ..+...|...+-...+.|.+++|++.+.++
T Consensus 540 ~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK-cn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 540 KAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK-CN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh-cC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 99999876 467665 899999999999999999999999998 55 566778888889999999999999999887
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.0002 Score=77.79 Aligned_cols=291 Identities=12% Similarity=0.009 Sum_probs=185.9
Q ss_pred HHHHhcCChHHHHHHHhcCCC----CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCC--C----CCCH--HHHHHHHHH
Q 048578 172 TFYCNFGDVKSAQLLFDQMTE----KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSG--V----EVNE--LTLVSVLSA 239 (519)
Q Consensus 172 ~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~----~~~~--~~~~~ll~~ 239 (519)
......|+++.+..+++.+.. .+..........+...|+++++...+......- . .+.. .....+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 344556778887787777642 222233344555678899999999988775431 0 1111 112223344
Q ss_pred HhccCChHHHHHHHHHHHHcCCCcc----hhHHHHHHHHHHhcCCHHHHHHHHhhcCC-------CC--hhhHHHHHHHH
Q 048578 240 CANLGASELGKWVHEFVNKNCIILN----DKLGAALTDMYAKCGYIEEALRVFKIVLE-------KN--VCTWNSIIGGL 306 (519)
Q Consensus 240 ~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~--~~~~~~l~~~~ 306 (519)
+...|+++.|...++.........+ ....+.+...+...|++++|...+.+... +. ..+...+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 5678999999999998876321111 12445667778889999999999887743 11 12445566778
Q ss_pred HHcCChHHHHHHHHHHHH----CCCC--C-CHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcC-CCC--ChhHHHHHHHH
Q 048578 307 AIHGCGEEAVKMFWQMQM----SGIK--P-DDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYK-VEP--NVKHYGCLVDL 376 (519)
Q Consensus 307 ~~~g~~~~a~~~~~~m~~----~g~~--p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~--~~~~~~~l~~~ 376 (519)
...|++++|...+++... .|.. + ....+..+...+...|++++|...+.+...... ..+ ....+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 889999999999888654 2211 1 223445566667788999999999888755211 112 23445556778
Q ss_pred HHhcCChHHHHHHHHhC----CCCCCHHHHH-----HHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCch----HHHHH
Q 048578 377 LCRARLLDEAYEVIRNM----PMEPNAVLWG-----SLLTACASADDGANVELAEIAMERLIKLEPFNDGN----YVLMS 443 (519)
Q Consensus 377 ~~~~~~~~~A~~~~~~~----~~~p~~~~~~-----~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~----~~~l~ 443 (519)
+...|+.++|.+.+++. ........+. ..+..+.. .|+.+.|...+.......+..... +..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a 698 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQM---TGDKEAAANWLRQAPKPEFANNHFLQGQWRNIA 698 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHH---CCCHHHHHHHHHhcCCCCCccchhHHHHHHHHH
Confidence 88999999999888776 1111111111 11233445 788999999987765433222211 45788
Q ss_pred HHHHhcCCchHHHHHHHHHHhC
Q 048578 444 NIYAAKAQWDDAGKMRRLMKER 465 (519)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~m~~~ 465 (519)
.++...|++++|...+++....
T Consensus 699 ~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 699 RAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 8899999999999999988654
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.3e-07 Score=54.49 Aligned_cols=32 Identities=41% Similarity=0.741 Sum_probs=22.6
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 048578 362 KVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM 393 (519)
Q Consensus 362 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 393 (519)
|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56677777777777777777777777777665
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.00083 Score=67.38 Aligned_cols=393 Identities=14% Similarity=0.106 Sum_probs=223.4
Q ss_pred hhHHHHHHHHHhhcCCCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHH
Q 048578 63 ISDTQLAKLIESLVNSSQIAYAHLVFNQII---NPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLK 139 (519)
Q Consensus 63 ~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 139 (519)
..|...++++... +.|+.++|..+++... ..|..+...+-.+|...++.++|..+|+..... -|+......+..
T Consensus 42 ~~~a~vLkaLsl~-r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFm 118 (932)
T KOG2053|consen 42 ALYAKVLKALSLF-RLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFM 118 (932)
T ss_pred cHHHHHHHHHHHH-HhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHH
Confidence 3455556655432 3399999998888762 347778888999999999999999999998874 477777777888
Q ss_pred HHcCccchHHHHHHHHH-hCCCCCchhHHHHHHHHHHhcCC----------hHHHHHHHhcCCCCc--h---hHHHHHHH
Q 048578 140 ACGDLRQVKGVHSLVVK-SKDFNSVIHSLTRLITFYCNFGD----------VKSAQLLFDQMTEKN--V---VTWTAMIN 203 (519)
Q Consensus 140 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~--~---~~~~~li~ 203 (519)
++.+.+...+..+.-.+ ....+-+...+-++++.+...-. ..-|.+.++.+.+.+ . .-...-..
T Consensus 119 ayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~ 198 (932)
T KOG2053|consen 119 AYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLL 198 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHH
Confidence 88888874333333222 11245566666677776655422 233555555554422 1 11122233
Q ss_pred HHHHcCChhHHHHHHH-HHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHH------
Q 048578 204 GHVKQKNYREGIDLFR-KMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYA------ 276 (519)
Q Consensus 204 ~~~~~~~~~~a~~~~~-~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~------ 276 (519)
.+-..|++++|+.++. ..-+.-...+...-+.-+..+...++|.+..++-.++...|.. | |...++.+.
T Consensus 199 iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D-d---y~~~~~sv~klLe~~ 274 (932)
T KOG2053|consen 199 ILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND-D---YKIYTDSVFKLLELL 274 (932)
T ss_pred HHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc-c---hHHHHHHHHHHHHhc
Confidence 4557788889988883 3333333334455556677778888888888888888887632 2 332222211
Q ss_pred ----------hcCCHHHHHHHHhhcCCC-ChhhHHHHHHHHH---HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 048578 277 ----------KCGYIEEALRVFKIVLEK-NVCTWNSIIGGLA---IHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACS 342 (519)
Q Consensus 277 ----------~~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~---~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 342 (519)
..+..+...+...+.... .-..|-+-+.+.. .-|+.+++...|-+- -|-.| .+..=+..|.
T Consensus 275 ~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~k--fg~kp---cc~~Dl~~yl 349 (932)
T KOG2053|consen 275 NKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKK--FGDKP---CCAIDLNHYL 349 (932)
T ss_pred ccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHH--hCCCc---HhHhhHHHhh
Confidence 122333333333333222 1122333333333 336666665554332 22222 1111122222
Q ss_pred ccCcHHHHHHHHHHcHHhcCCCCChh-------HHHHHHHHHHhcCC-----hHHHHHHHHhC------------CCCCC
Q 048578 343 HAGLIEKGKEIFYNMRRDYKVEPNVK-------HYGCLVDLLCRARL-----LDEAYEVIRNM------------PMEPN 398 (519)
Q Consensus 343 ~~g~~~~a~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~-----~~~A~~~~~~~------------~~~p~ 398 (519)
..=..+.-..++...... .++.. -+...+....-.|. -+....++.+. ++-|+
T Consensus 350 ~~l~~~q~~~l~~~l~~~---~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~T 426 (932)
T KOG2053|consen 350 GHLNIDQLKSLMSKLVLA---DDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPT 426 (932)
T ss_pred ccCCHHHHHHHHHHhhcc---CCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhcccccccccccc
Confidence 222222223333333221 11111 01112222222221 12222222221 12233
Q ss_pred H---------HHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcc
Q 048578 399 A---------VLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVK 469 (519)
Q Consensus 399 ~---------~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 469 (519)
. .+.+.|+..+.+.++.+.+-+|+-+++......|.|..+-..++.+|.-.|-+..|.++++.+--++|..
T Consensus 427 E~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~ 506 (932)
T KOG2053|consen 427 EYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQT 506 (932)
T ss_pred ccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhh
Confidence 2 2456788889997777778889999999999999999999999999999999999999999987777765
Q ss_pred C
Q 048578 470 N 470 (519)
Q Consensus 470 ~ 470 (519)
|
T Consensus 507 D 507 (932)
T KOG2053|consen 507 D 507 (932)
T ss_pred c
Confidence 4
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.2e-07 Score=54.62 Aligned_cols=34 Identities=29% Similarity=0.534 Sum_probs=29.1
Q ss_pred CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcH
Q 048578 325 SGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMR 358 (519)
Q Consensus 325 ~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 358 (519)
+|+.||..||+.||.+|++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4788888999999999999999999998888873
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.2e-05 Score=69.01 Aligned_cols=154 Identities=9% Similarity=0.031 Sum_probs=112.8
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 048578 272 TDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGK 351 (519)
Q Consensus 272 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~ 351 (519)
+..|...|+++.+....+.+..+. . .+...++.+++...+++..+.. +.|...|..+...|...|+++.|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456777777777655544332221 0 1112566677887888777654 566778999999999999999999
Q ss_pred HHHHHcHHhcCCCCChhHHHHHHHHH-HhcCC--hHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHH
Q 048578 352 EIFYNMRRDYKVEPNVKHYGCLVDLL-CRARL--LDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAME 426 (519)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~ 426 (519)
..|++..+ -.+.+...+..+..++ ...|+ .++|.+++++. ...| +...+..+...+.. .|++++|...++
T Consensus 94 ~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~---~g~~~~Ai~~~~ 168 (198)
T PRK10370 94 LAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFM---QADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHH---cCCHHHHHHHHH
Confidence 99999987 3345677888888864 67777 59999999998 6667 45567777777888 999999999999
Q ss_pred HHHhhCCCCCchH
Q 048578 427 RLIKLEPFNDGNY 439 (519)
Q Consensus 427 ~~~~~~p~~~~~~ 439 (519)
++++..|.+..-+
T Consensus 169 ~aL~l~~~~~~r~ 181 (198)
T PRK10370 169 KVLDLNSPRVNRT 181 (198)
T ss_pred HHHhhCCCCccHH
Confidence 9999997755433
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.6e-05 Score=81.04 Aligned_cols=193 Identities=14% Similarity=0.177 Sum_probs=109.6
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHhC-CCCCCH---HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHH
Q 048578 195 VVTWTAMINGHVKQKNYREGIDLFRKMRDS-GVEVNE---LTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAA 270 (519)
Q Consensus 195 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 270 (519)
...|-..|......++.++|.+++++.+.. +++-.. ..|.++++.-...|.-+...++|+++.+.. ..-.+|..
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~ 1535 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLK 1535 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHH
Confidence 346777777777888888888888777654 222111 245555555555566666667777666643 22334555
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--H-HHHHHHHHHHhcc
Q 048578 271 LTDMYAKCGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPD--D-VTLIAVLTACSHA 344 (519)
Q Consensus 271 l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~--~-~~~~~l~~~~~~~ 344 (519)
|...|.+.+.+++|.++|+.|.+ .....|...+..+.++++-+.|..++.+..+. -|. . ......+..-.+.
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhc
Confidence 66666666666666666666644 24455666666666666666666666655542 222 1 1233333344455
Q ss_pred CcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 048578 345 GLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM 393 (519)
Q Consensus 345 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 393 (519)
|+.+++..+|+.... ..+.-...|+.+++.-.+.|+.+.+..+|++.
T Consensus 1614 GDaeRGRtlfEgll~--ayPKRtDlW~VYid~eik~~~~~~vR~lfeRv 1660 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLS--AYPKRTDLWSVYIDMEIKHGDIKYVRDLFERV 1660 (1710)
T ss_pred CCchhhHHHHHHHHh--hCccchhHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 666666666666555 23334455666666666666666666666555
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.4e-05 Score=80.39 Aligned_cols=233 Identities=10% Similarity=0.028 Sum_probs=135.2
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCCC--Cch-hHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048578 163 VIHSLTRLITFYCNFGDVKSAQLLFDQMTE--KNV-VTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSA 239 (519)
Q Consensus 163 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 239 (519)
+...+..|+..|...+++++|.++.+...+ |+. ..|..+...+.+.++.+++..+ .++..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-----------------NLIDS 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-----------------hhhhh
Confidence 466777788888888888888888876554 333 3344444466666665555444 22233
Q ss_pred HhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHH
Q 048578 240 CANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAV 316 (519)
Q Consensus 240 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~ 316 (519)
.....++..+..+...+... ..+...+..+..+|-+.|+.++|..+++++.+ .|+.+.|.+...|... +.++|.
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred cccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHH
Confidence 33333444444444444443 23444566677777777777777777777654 2556667777777766 777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 048578 317 KMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPME 396 (519)
Q Consensus 317 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 396 (519)
+++.+.... +...+++..+.++|.++.. ..+.+...+..+.+.....- +..
T Consensus 170 ~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~~------------~~~ 220 (906)
T PRK14720 170 TYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGHR------------EFT 220 (906)
T ss_pred HHHHHHHHH---------------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhhh------------ccc
Confidence 777666542 4455566666777777665 22233333322222222111 111
Q ss_pred CCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 048578 397 PNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYA 447 (519)
Q Consensus 397 p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 447 (519)
--..++..+...|.. .++++++..+++.+++.+|.|-.+...++..|.
T Consensus 221 ~~~~~~~~l~~~y~~---~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 221 RLVGLLEDLYEPYKA---LEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhHHHHHHHHHHHhh---hhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 122333444445555 667777777777777777777777777777766
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.00011 Score=63.09 Aligned_cols=175 Identities=18% Similarity=0.088 Sum_probs=93.9
Q ss_pred HHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 048578 251 WVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPD 330 (519)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~ 330 (519)
.+.+.+.......+......-...|+..|++++|++..... .+......=+..+.+..+++-|.+.+++|.+ --+
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~--~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~---ide 168 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG--ENLEAAALNVQILLKMHRFDLAEKELKKMQQ---IDE 168 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cch
Confidence 33344444333333333333445566667777777666652 2233333333445566667777777777764 224
Q ss_pred HHHHHHHHHHHhc----cCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHH
Q 048578 331 DVTLIAVLTACSH----AGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM--PMEPNAVLWGS 404 (519)
Q Consensus 331 ~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~p~~~~~~~ 404 (519)
..|.+.|..++.+ .+....|.-+|+++.+ ..+|+..+.+-...++...|++++|..++++. ....+..+...
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~N 246 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLAN 246 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 4566655555443 3456666777777765 45566666666666666667777776666666 22224444444
Q ss_pred HHHHHccccCCCCHHHHHHHHHHHHhhCCC
Q 048578 405 LLTACASADDGANVELAEIAMERLIKLEPF 434 (519)
Q Consensus 405 ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (519)
++...... ..+.+...+.+.++....|.
T Consensus 247 liv~a~~~--Gkd~~~~~r~l~QLk~~~p~ 274 (299)
T KOG3081|consen 247 LIVLALHL--GKDAEVTERNLSQLKLSHPE 274 (299)
T ss_pred HHHHHHHh--CCChHHHHHHHHHHHhcCCc
Confidence 44443330 23344455555665555555
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.1e-05 Score=82.05 Aligned_cols=160 Identities=8% Similarity=-0.033 Sum_probs=107.7
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHH
Q 048578 295 NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDV-TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCL 373 (519)
Q Consensus 295 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 373 (519)
++..+..|.....+.|.+++|+.+++...+ +.|+.. ....++.++.+.+++++|...++.... .-+-+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 466777777777788888888888888776 356654 667777778888888888888887776 344455666777
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 048578 374 VDLLCRARLLDEAYEVIRNM-PMEPN-AVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQ 451 (519)
Q Consensus 374 ~~~~~~~~~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 451 (519)
..++.+.|++++|.++|++. .-.|+ ..++..+..++.. .|+.++|...|++++....+-...|+.++ ++
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~---~G~~~~A~~~~~~a~~~~~~~~~~~~~~~------~~ 231 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTR---RGALWRARDVLQAGLDAIGDGARKLTRRL------VD 231 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhhCcchHHHHHHH------HH
Confidence 77788888888888888877 33443 5567777777777 78888888888888776533234433332 23
Q ss_pred chHHHHHHHHHHhCCC
Q 048578 452 WDDAGKMRRLMKERNI 467 (519)
Q Consensus 452 ~~~A~~~~~~m~~~~~ 467 (519)
+..-...++++.-.+.
T Consensus 232 ~~~~~~~~~~~~~~~~ 247 (694)
T PRK15179 232 LNADLAALRRLGVEGD 247 (694)
T ss_pred HHHHHHHHHHcCcccc
Confidence 3334445555544333
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.8e-05 Score=77.27 Aligned_cols=372 Identities=11% Similarity=0.028 Sum_probs=183.9
Q ss_pred ChHHHHHHHhcCCCCCc---chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHHHHH
Q 048578 80 QIAYAHLVFNQIINPST---FAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVK 156 (519)
Q Consensus 80 ~~~~A~~~~~~~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~ 156 (519)
+.+.|...|=+..+.|+ ..|..|...|...-+...|.+.|.+..+.+ ..|..........++...+.+.++.....
T Consensus 473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 45555555544433222 346666666665556666666666665532 12333455555566666665555555443
Q ss_pred hCCCCCch---hHHHHHHHHHHhcCChHHHHHHHhcCCC---CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH
Q 048578 157 SKDFNSVI---HSLTRLITFYCNFGDVKSAQLLFDQMTE---KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNE 230 (519)
Q Consensus 157 ~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 230 (519)
.+...|-. ..|....-.|.+.++...|..-|+...+ .|...|..+..+|...|++..|.++|.+.... +|+.
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s 629 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS 629 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh
Confidence 33222211 1122233345566777777777766655 34456677777777777777777777766553 3432
Q ss_pred HHHHHHH--HHHhccCChHHHHHHHHHHHHcC------CCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---------
Q 048578 231 LTLVSVL--SACANLGASELGKWVHEFVNKNC------IILNDKLGAALTDMYAKCGYIEEALRVFKIVLE--------- 293 (519)
Q Consensus 231 ~~~~~ll--~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------- 293 (519)
+|...- ..-+..|.+.++...++.+.... ...-..++-.+...+.-.|-..+|.+.+++-.+
T Consensus 630 -~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~ 708 (1238)
T KOG1127|consen 630 -KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS 708 (1238)
T ss_pred -HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 222221 22455677777777666665421 111112222222222233333333333333211
Q ss_pred --CChhhHHHHHHHHHH---cC-C-h-HHHHHHHH-HHHHCCCC--------------------CCHHHHHHHHHHHhc-
Q 048578 294 --KNVCTWNSIIGGLAI---HG-C-G-EEAVKMFW-QMQMSGIK--------------------PDDVTLIAVLTACSH- 343 (519)
Q Consensus 294 --~~~~~~~~l~~~~~~---~g-~-~-~~a~~~~~-~m~~~g~~--------------------p~~~~~~~l~~~~~~- 343 (519)
.+...|-.+-.++.- .. + + .....++. +....+.- .+..+|..++..|.+
T Consensus 709 ~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~ 788 (1238)
T KOG1127|consen 709 LQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRY 788 (1238)
T ss_pred hhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHH
Confidence 111122222111110 00 0 0 00001111 11111111 122233333333322
Q ss_pred ---c----CcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccC
Q 048578 344 ---A----GLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADD 414 (519)
Q Consensus 344 ---~----g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~ 414 (519)
. .+...|+..+.+..+ -..-+..+|+.|.-. ...|++.-|..-|-+- -..| ...+|..+.-.+..
T Consensus 789 f~~l~et~~~~~~Ai~c~KkaV~--L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~--- 862 (1238)
T KOG1127|consen 789 FLLLGETMKDACTAIRCCKKAVS--LCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLE--- 862 (1238)
T ss_pred HHHcCCcchhHHHHHHHHHHHHH--HhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEe---
Confidence 1 122345555555544 122344555555444 4445555555544443 2223 45566666666777
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 048578 415 GANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRL 461 (519)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (519)
..+++.|...|.+...++|.|...|...+......|+.-++..+|..
T Consensus 863 n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 863 NQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred cccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 77888888888888888888888888777777788887777777766
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.8e-05 Score=70.61 Aligned_cols=181 Identities=13% Similarity=0.002 Sum_probs=122.2
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcc---hhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---Chh---h
Q 048578 228 VNELTLVSVLSACANLGASELGKWVHEFVNKNCIILN---DKLGAALTDMYAKCGYIEEALRVFKIVLEK---NVC---T 298 (519)
Q Consensus 228 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~---~ 298 (519)
.....+..+...+...|+++.|...++.+.+.. +.+ ...+..+..++...|++++|...++++.+. +.. +
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 355677778888999999999999999998865 222 246677889999999999999999998653 222 3
Q ss_pred HHHHHHHHHHc--------CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhH
Q 048578 299 WNSIIGGLAIH--------GCGEEAVKMFWQMQMSGIKPDDV-TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKH 369 (519)
Q Consensus 299 ~~~l~~~~~~~--------g~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 369 (519)
+..+..++... |++++|.+.++++... .|+.. ....+..... . .... . ..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~------~~~~-~--------~~ 168 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----L------RNRL-A--------GK 168 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----H------HHHH-H--------HH
Confidence 55555556554 7889999999999875 45443 2222211100 0 0000 0 11
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CC---CC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCC
Q 048578 370 YGCLVDLLCRARLLDEAYEVIRNM-PM---EP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEP 433 (519)
Q Consensus 370 ~~~l~~~~~~~~~~~~A~~~~~~~-~~---~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p 433 (519)
...+...|.+.|++++|...+++. .. .| ....+..+..++.. .|++++|...++.+....|
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~---lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLK---LGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhhCC
Confidence 124566778888888888888777 22 23 24567777777888 8888888888877766554
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.2e-05 Score=65.00 Aligned_cols=172 Identities=15% Similarity=0.107 Sum_probs=120.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCC--Ch-hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 048578 268 GAALTDMYAKCGYIEEALRVFKIVLEK--NV-CTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHA 344 (519)
Q Consensus 268 ~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 344 (519)
+..++-+....|+.+.|..+++.+..+ +. ..-..-.--+-..|++++|+++++.+.+.+ +-|..++--=+...-..
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHc
Confidence 444455555566666666666655332 11 111111122345688899999999988775 44555666556566667
Q ss_pred CcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHH
Q 048578 345 GLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAE 422 (519)
Q Consensus 345 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~ 422 (519)
|+--+|++-+....+ .+.-|...|.-+...|...|++++|.-.++++ -+.| +...+..+...+...|...+++.+.
T Consensus 134 GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred CCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 777788888888888 57789999999999999999999999999998 5566 4556677777655544477899999
Q ss_pred HHHHHHHhhCCCCCchHHHH
Q 048578 423 IAMERLIKLEPFNDGNYVLM 442 (519)
Q Consensus 423 ~~~~~~~~~~p~~~~~~~~l 442 (519)
++|.+++++.|.+.+.+..+
T Consensus 212 kyy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 212 KYYERALKLNPKNLRALFGI 231 (289)
T ss_pred HHHHHHHHhChHhHHHHHHH
Confidence 99999999999665555433
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00037 Score=64.38 Aligned_cols=224 Identities=13% Similarity=0.037 Sum_probs=112.2
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccC-ChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCC--
Q 048578 205 HVKQKNYREGIDLFRKMRDSGVEVNE-LTLVSVLSACANLG-ASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGY-- 280 (519)
Q Consensus 205 ~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-- 280 (519)
+...++.++|+.++.++++. .|+. .+|+.-..++...| +++++...++.+.+.+ +.+..+++.-..++.+.|+
T Consensus 47 l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 47 YASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchh
Confidence 33444555555555555543 2222 23333333333334 3455555555555543 2333334433333333343
Q ss_pred HHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc---Cc----HHHH
Q 048578 281 IEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHA---GL----IEKG 350 (519)
Q Consensus 281 ~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~---g~----~~~a 350 (519)
.+++..+++++.+ .|..+|+...-.+...|+++++++.++++++.+ .-|...|+.....+.+. |. .++.
T Consensus 124 ~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 124 ANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHH
Confidence 2445555555543 345566666666666677777777777776654 22334444444443332 21 2345
Q ss_pred HHHHHHcHHhcCCCCChhHHHHHHHHHHhc----CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccC----------
Q 048578 351 KEIFYNMRRDYKVEPNVKHYGCLVDLLCRA----RLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADD---------- 414 (519)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~---------- 414 (519)
..+..++.. ..+-+...|+.+...+... ++..+|.+.+.+. ...| +......|+..|....+
T Consensus 203 l~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~ 280 (320)
T PLN02789 203 LKYTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVD 280 (320)
T ss_pred HHHHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhh
Confidence 555545544 2344556666666666652 3345566666655 3334 44456666666554110
Q ss_pred -----CCCHHHHHHHHHHHHhhCCC
Q 048578 415 -----GANVELAEIAMERLIKLEPF 434 (519)
Q Consensus 415 -----~~~~~~a~~~~~~~~~~~p~ 434 (519)
....++|.++++.+.+.+|-
T Consensus 281 ~~~~~~~~~~~a~~~~~~l~~~d~i 305 (320)
T PLN02789 281 TLAEELSDSTLAQAVCSELEVADPM 305 (320)
T ss_pred ccccccccHHHHHHHHHHHHhhCcH
Confidence 11346777777777666665
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=7.8e-06 Score=65.10 Aligned_cols=96 Identities=13% Similarity=0.013 Sum_probs=82.8
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHH
Q 048578 366 NVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPNAV-LWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMS 443 (519)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 443 (519)
+......+...+...|++++|..+|+-. -+.|... -|..|.-.+.. .|++++|+..|.++..++|++++.+..++
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~---~g~~~~AI~aY~~A~~L~~ddp~~~~~ag 110 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQA---QKHWGEAIYAYGRAAQIKIDAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH---HhhHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 4455566777788999999999999998 6677554 55666666777 99999999999999999999999999999
Q ss_pred HHHHhcCCchHHHHHHHHHHh
Q 048578 444 NIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~m~~ 464 (519)
.++...|+.+.|.+.|+....
T Consensus 111 ~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999998865
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=6.5e-05 Score=70.04 Aligned_cols=126 Identities=18% Similarity=0.139 Sum_probs=100.6
Q ss_pred HHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHccccCC
Q 048578 338 LTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPN-AVLWGSLLTACASADDG 415 (519)
Q Consensus 338 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~ 415 (519)
...+...|+++.|+..++.+.+ ..+.|+..+....+.+.+.++.++|.+.++++ ...|+ ......+..++.. .
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~---~ 387 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLK---G 387 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHh---c
Confidence 3345667888999999988887 45566777777888899999999999999888 66776 4566677778888 8
Q ss_pred CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 048578 416 ANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIV 468 (519)
Q Consensus 416 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 468 (519)
|++.+|+.+++.....+|+|+..|..|+.+|...|+..+|.....+.......
T Consensus 388 g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~ 440 (484)
T COG4783 388 GKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGR 440 (484)
T ss_pred CChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCC
Confidence 88999999999998889999999999999998888888888777666544433
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.7e-05 Score=65.86 Aligned_cols=135 Identities=14% Similarity=0.090 Sum_probs=113.5
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHH
Q 048578 328 KPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM--PMEPNAVLWGSL 405 (519)
Q Consensus 328 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~p~~~~~~~l 405 (519)
.|+......+-..+...|+-+....+...... ..+.+......++....+.|++.+|...+.+. .-++|...|+.+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 55444336677778888888888888777654 34455566677999999999999999999998 434567788888
Q ss_pred HHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 406 LTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 406 l~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
.-+|.+ .|+++.|...|.++.++.|.++..++.++..|.-.|+++.|..++......+.
T Consensus 141 gaaldq---~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 141 GAALDQ---LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred HHHHHH---ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 888999 99999999999999999999999999999999999999999999999876655
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00039 Score=59.76 Aligned_cols=169 Identities=13% Similarity=0.058 Sum_probs=109.5
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC-
Q 048578 216 DLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEK- 294 (519)
Q Consensus 216 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~- 294 (519)
++.+.+.......+......-...|+..++++.|.+...... +......=+..+.+..+.+-|...+++|.+-
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id 167 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID 167 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 344444444333333333333445777888888877765521 2223333345566777888888888888764
Q ss_pred ChhhHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHH
Q 048578 295 NVCTWNSIIGGLAI----HGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHY 370 (519)
Q Consensus 295 ~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 370 (519)
+..+.+.|..++.+ .+.+..|.-+|++|-++ ..|+..+.+....++...|++++|..++++... .-..++.+.
T Consensus 168 ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~--kd~~dpetL 244 (299)
T KOG3081|consen 168 EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD--KDAKDPETL 244 (299)
T ss_pred hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh--ccCCCHHHH
Confidence 44556666666654 35678899999998754 588888999999999999999999999999887 344456666
Q ss_pred HHHHHHHHhcCChHHH-HHHHHhC
Q 048578 371 GCLVDLLCRARLLDEA-YEVIRNM 393 (519)
Q Consensus 371 ~~l~~~~~~~~~~~~A-~~~~~~~ 393 (519)
..++-+-...|...++ .+.+.+.
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHH
Confidence 6666665556655443 3344444
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.1e-05 Score=65.01 Aligned_cols=96 Identities=22% Similarity=0.191 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 048578 368 KHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNI 445 (519)
Q Consensus 368 ~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 445 (519)
.....+...+...|++++|.+.++.. ...| +...+..+...+.. .|++++|...++++++.+|.++..+..++.+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~---~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 94 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQM---LKEYEEAIDAYALAAALDPDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 34445556666666666666666665 3334 34455555555666 6667777777777777777767777777777
Q ss_pred HHhcCCchHHHHHHHHHHhCC
Q 048578 446 YAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 446 ~~~~g~~~~A~~~~~~m~~~~ 466 (519)
|...|++++|...+++..+..
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHhc
Confidence 777777777777776665543
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00016 Score=73.63 Aligned_cols=143 Identities=12% Similarity=0.065 Sum_probs=118.7
Q ss_pred CCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 048578 260 CIILNDKLGAALTDMYAKCGYIEEALRVFKIVLE--K-NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIA 336 (519)
Q Consensus 260 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 336 (519)
..+.+...+..|.....+.|.+++|+.+++.+.+ | +......++..+.+.+++++|+..+++..... +-+......
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 3566788999999999999999999999999865 3 55678888999999999999999999998753 334457788
Q ss_pred HHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHH
Q 048578 337 VLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM--PMEPNAVLWGSL 405 (519)
Q Consensus 337 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~p~~~~~~~l 405 (519)
+..++.+.|++++|..+|+++.. ..+-+..++..+..++...|+.++|...|++. ...|-...|+..
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~ 228 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRR 228 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHH
Confidence 88899999999999999999997 34445788999999999999999999999998 333444454444
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.27 E-value=4.3e-05 Score=71.87 Aligned_cols=131 Identities=13% Similarity=0.055 Sum_probs=105.2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 048578 264 NDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSH 343 (519)
Q Consensus 264 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 343 (519)
+......|+..+...++++.|+.+|+++.+.++.....++..+...++-.+|.+++++..... +-+......-...|.+
T Consensus 168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred chHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 344556677777788899999999999988888888888888888888889999999888642 3455566667777889
Q ss_pred cCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC
Q 048578 344 AGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEP 397 (519)
Q Consensus 344 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p 397 (519)
.++++.|..+.+++.+ -.+-+-.+|..|..+|...|++++|+-.++.++..|
T Consensus 247 k~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 247 KKKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred cCCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 9999999999999987 344456699999999999999999999999885433
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.0003 Score=72.66 Aligned_cols=233 Identities=8% Similarity=-0.016 Sum_probs=125.0
Q ss_pred CchhHHHHHHHHHhhcCCCChHHHHHHHhcCCC--CC-cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHH
Q 048578 61 RTISDTQLAKLIESLVNSSQIAYAHLVFNQIIN--PS-TFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPIL 137 (519)
Q Consensus 61 ~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 137 (519)
+...+..|+..|... +++++|.++.+.... |+ ...|-.+...+.+.++...+..+ .+.. ..+...-|..+
T Consensus 30 n~~a~~~Li~~~~~~---~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~--~~~~~~~~~~v 102 (906)
T PRK14720 30 KFKELDDLIDAYKSE---NLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLID--SFSQNLKWAIV 102 (906)
T ss_pred hHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhh--hcccccchhHH
Confidence 455667777777666 788888777775532 33 33344444466666666666555 3322 22222222222
Q ss_pred HHHHcCccchHHHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CchhHHHHHHHHHHHcCChhHH
Q 048578 138 LKACGDLRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTE---KNVVTWTAMINGHVKQKNYREG 214 (519)
Q Consensus 138 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a 214 (519)
-..|. ..+....+...+..+..+|-+.|+.++|..+++++.+ .|+.+.|.+...|... ++++|
T Consensus 103 e~~~~-------------~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 103 EHICD-------------KILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred HHHHH-------------HHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHH
Confidence 22211 1111333444666677777777777777777777765 3556667777777777 77777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC
Q 048578 215 IDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEK 294 (519)
Q Consensus 215 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 294 (519)
.+++.+.... +...+++..+..+|..+.... +.+...+..+.+.....-. ..+
T Consensus 169 ~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~-~~d~d~f~~i~~ki~~~~~-----------~~~ 221 (906)
T PRK14720 169 ITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN-SDDFDFFLRIERKVLGHRE-----------FTR 221 (906)
T ss_pred HHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC-cccchHHHHHHHHHHhhhc-----------cch
Confidence 7777666543 334445555666666655543 2222222222111111100 111
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 048578 295 NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACS 342 (519)
Q Consensus 295 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 342 (519)
-+.++..+-..|-..++|+++..+++.+.+.. +-|.....-++.+|.
T Consensus 222 ~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 222 LVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred hHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 23344555566667777777777777777643 234445666665554
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.5e-05 Score=73.45 Aligned_cols=123 Identities=15% Similarity=0.124 Sum_probs=97.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHc
Q 048578 333 TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACA 410 (519)
Q Consensus 333 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 410 (519)
....|+..+...++++.|..+|+++.+. .|+ ....+++.+...++-.+|.+++.+. ...| +...+..-...+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3445666677778888888888888773 244 4445778888888888888888877 3344 4455555556677
Q ss_pred cccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 048578 411 SADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMK 463 (519)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (519)
. .++++.|..+.+++.+..|.+-.+|..|+.+|.+.|++++|+-.++.+.
T Consensus 246 ~---k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 S---KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred h---cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 7 8899999999999999999999999999999999999999999888775
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.4e-06 Score=50.07 Aligned_cols=35 Identities=31% Similarity=0.725 Sum_probs=33.0
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCc
Q 048578 97 FAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDS 131 (519)
Q Consensus 97 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 131 (519)
.+||.+|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999984
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00058 Score=63.91 Aligned_cols=137 Identities=15% Similarity=0.076 Sum_probs=93.9
Q ss_pred HHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHH
Q 048578 274 MYAKCGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPD-DVTLIAVLTACSHAGLIEK 349 (519)
Q Consensus 274 ~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~ 349 (519)
.+...|++++|+..++.+.. .|+..+......+.+.++.++|.+.++++... .|+ ......+..++.+.|++.+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 34456777777777776643 35555666667777777777777777777763 555 3455666777777777777
Q ss_pred HHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHH
Q 048578 350 GKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVELAEIAMERLI 429 (519)
Q Consensus 350 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~ 429 (519)
|+.++..... ..+-|+..|..|.++|...|+..+|.....+ ++.. .|+++.|...+..+.
T Consensus 393 ai~~L~~~~~--~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE---------------~~~~---~G~~~~A~~~l~~A~ 452 (484)
T COG4783 393 AIRILNRYLF--NDPEDPNGWDLLAQAYAELGNRAEALLARAE---------------GYAL---AGRLEQAIIFLMRAS 452 (484)
T ss_pred HHHHHHHHhh--cCCCCchHHHHHHHHHHHhCchHHHHHHHHH---------------HHHh---CCCHHHHHHHHHHHH
Confidence 7777777766 5566677777777777777777777665544 3444 677777777777777
Q ss_pred hhC
Q 048578 430 KLE 432 (519)
Q Consensus 430 ~~~ 432 (519)
+..
T Consensus 453 ~~~ 455 (484)
T COG4783 453 QQV 455 (484)
T ss_pred Hhc
Confidence 655
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.7e-05 Score=60.70 Aligned_cols=101 Identities=13% Similarity=0.046 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 048578 332 VTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTAC 409 (519)
Q Consensus 332 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 409 (519)
.....+...+...|++++|...|+.+.. ..+.+...+..+...+...|++++|...++.. ...| +...+..+...+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAA--YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3555666677777888888888877766 23446677777788888888888888877776 4445 345566666667
Q ss_pred ccccCCCCHHHHHHHHHHHHhhCCCCCc
Q 048578 410 ASADDGANVELAEIAMERLIKLEPFNDG 437 (519)
Q Consensus 410 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 437 (519)
.. .|+++.|...++++.+.+|++..
T Consensus 96 ~~---~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 96 LA---LGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred HH---cCCHHHHHHHHHHHHHhccccch
Confidence 77 78888888888888888887544
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.5e-06 Score=48.95 Aligned_cols=34 Identities=29% Similarity=0.603 Sum_probs=32.1
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 048578 96 TFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDP 129 (519)
Q Consensus 96 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p 129 (519)
+.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999987
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0036 Score=63.76 Aligned_cols=416 Identities=12% Similarity=0.036 Sum_probs=213.4
Q ss_pred HHhccCchHHHHHHHHHHHhcCCCC-chhHHHHHHHHHhhcCCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCCh
Q 048578 37 LQKCTHLVQFKQVHAQIIKASFDNR-TISDTQLAKLIESLVNSSQIAYAHLVFNQIIN---PSTFAFNTVIRGYAEAGLG 112 (519)
Q Consensus 37 l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~ 112 (519)
...|.+......+...+....+.++ ...|..|-..|... .+...|.+.|+...+ .+..++......|++..++
T Consensus 466 a~~~~rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~---~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~w 542 (1238)
T KOG1127|consen 466 ALGCMRKNSALALHALIRALRLDVSLAPAFAFLGQIYRDS---DDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTW 542 (1238)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccH
Confidence 3344444455555555555555554 34577777777777 677778888877744 3456677777888888888
Q ss_pred hHHHHHHHHHHhCCCCCCcchHHHHHH--HHcCccchHHHHHHHHHhCCCCC-chhHHHHHHHHHHhcCChHHHHHHHhc
Q 048578 113 HRGIQLYTQMIGNGLDPDSFTYPILLK--ACGDLRQVKGVHSLVVKSKDFNS-VIHSLTRLITFYCNFGDVKSAQLLFDQ 189 (519)
Q Consensus 113 ~~a~~~~~~m~~~g~~p~~~~~~~ll~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 189 (519)
+.|..+.-..-+.. +.-...++.+-. .+-..++..++...++..-...| |...|..+..+|.++|++..|.++|.+
T Consensus 543 e~a~~I~l~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~k 621 (1238)
T KOG1127|consen 543 EEAFEICLRAAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTK 621 (1238)
T ss_pred HHHHHHHHHHhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhh
Confidence 88877733222211 111112332222 23444444444444444322444 566777788888888888888888877
Q ss_pred CCCCchhHH-HH--HHHHHHHcCChhHHHHHHHHHHhC------CCCCCHHHHHHHHHHHhccCChHHHHHHHHH-----
Q 048578 190 MTEKNVVTW-TA--MINGHVKQKNYREGIDLFRKMRDS------GVEVNELTLVSVLSACANLGASELGKWVHEF----- 255 (519)
Q Consensus 190 ~~~~~~~~~-~~--li~~~~~~~~~~~a~~~~~~m~~~------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~----- 255 (519)
...-++.++ .. ..-.-+..|.+.+|+..+...... +...-..++..+...+...|-...+..+++.
T Consensus 622 As~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f 701 (1238)
T KOG1127|consen 622 ASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESF 701 (1238)
T ss_pred hHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 654332221 11 111234455555555555443221 0000111121111111111111111111111
Q ss_pred --HHHcCC-----------------------Ccc---------------------------------------hhHHHHH
Q 048578 256 --VNKNCI-----------------------ILN---------------------------------------DKLGAAL 271 (519)
Q Consensus 256 --~~~~~~-----------------------~~~---------------------------------------~~~~~~l 271 (519)
...... .|+ +.++..+
T Consensus 702 ~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNL 781 (1238)
T KOG1127|consen 702 IVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNL 781 (1238)
T ss_pred HHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHH
Confidence 111000 011 1111112
Q ss_pred HHHHHh----c----CCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048578 272 TDMYAK----C----GYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTA 340 (519)
Q Consensus 272 ~~~~~~----~----g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 340 (519)
+..|.+ . .+...|+..+.+.++ .+...|+.|.-. ...|++.-+..-|-+-.... +-...+|..+.-.
T Consensus 782 Ginylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL 859 (1238)
T KOG1127|consen 782 GINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVL 859 (1238)
T ss_pred hHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheecccee
Confidence 111111 0 111233333333322 233444444333 33344444444444333221 2233456566666
Q ss_pred HhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCCHHHHHHHHHHHcccc
Q 048578 341 CSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-------PMEPNAVLWGSLLTACASAD 413 (519)
Q Consensus 341 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~~~p~~~~~~~ll~~~~~~~ 413 (519)
|.+..+++.|...|...+. -.+.+...|.-........|+.-++..+|..- |-.|.-.-|.....-...
T Consensus 860 ~l~n~d~E~A~~af~~~qS--LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~-- 935 (1238)
T KOG1127|consen 860 VLENQDFEHAEPAFSSVQS--LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQ-- 935 (1238)
T ss_pred EEecccHHHhhHHHHhhhh--cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHh--
Confidence 6677888999999888876 34456667766666666778888888887662 333444433333333444
Q ss_pred CCCCHHH----------HHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 048578 414 DGANVEL----------AEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMK 463 (519)
Q Consensus 414 ~~~~~~~----------a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (519)
.|+.++ |.-.+++.....|+...+|...+....+.+.+.+|.+...+..
T Consensus 936 -Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 936 -NGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred -ccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 444444 4444555566779999999999999999999999888777653
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00011 Score=59.66 Aligned_cols=114 Identities=18% Similarity=0.190 Sum_probs=66.0
Q ss_pred cCcHHHHHHHHHHcHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHccccCCCC
Q 048578 344 AGLIEKGKEIFYNMRRDYKVEP-NVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPNA----VLWGSLLTACASADDGAN 417 (519)
Q Consensus 344 ~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~~~~~~ 417 (519)
.++...+...++.+.+.++-.+ .....-.+...+...|++++|...|+.. ...|+. .....+...+.. .|+
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~---~~~ 100 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQ---QGQ 100 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH---cCC
Confidence 5666666666666666322111 1223334556666677777777777666 222332 133334455666 777
Q ss_pred HHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 048578 418 VELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRL 461 (519)
Q Consensus 418 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (519)
+++|...++.. ...+..+..+...+++|.+.|++++|...|++
T Consensus 101 ~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 101 YDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777777552 22233456666777777777777777777765
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.11 E-value=5.7e-06 Score=48.41 Aligned_cols=34 Identities=29% Similarity=0.626 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH
Q 048578 197 TWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNE 230 (519)
Q Consensus 197 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 230 (519)
+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6899999999999999999999999999998873
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00039 Score=59.29 Aligned_cols=164 Identities=14% Similarity=0.113 Sum_probs=131.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHH
Q 048578 298 TWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDV-TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDL 376 (519)
Q Consensus 298 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 376 (519)
.|..++-+....|+.+-|...++++... + |.+. .-..-.--+-..|++++|+++++.+.+ .-+.|..++-.-+-+
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~--ddpt~~v~~KRKlAi 129 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLE--DDPTDTVIRKRKLAI 129 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhc--cCcchhHHHHHHHHH
Confidence 3455666777889999999999998765 2 4443 222223335667999999999999998 346677778777777
Q ss_pred HHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC---C
Q 048578 377 LCRARLLDEAYEVIRNM--PMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKA---Q 451 (519)
Q Consensus 377 ~~~~~~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~ 451 (519)
.-..|+.-+|++-+.+. .+-.|...|.-+-..|.. .|++++|.-.+++++-.+|-++..+..+++++.-.| +
T Consensus 130 lka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~---~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN 206 (289)
T KOG3060|consen 130 LKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLS---EGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAEN 206 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh---HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHH
Confidence 77888888888877766 556688999999999999 999999999999999999999999999999887555 6
Q ss_pred chHHHHHHHHHHhCCCc
Q 048578 452 WDDAGKMRRLMKERNIV 468 (519)
Q Consensus 452 ~~~A~~~~~~m~~~~~~ 468 (519)
++-|.++|++..+.+.+
T Consensus 207 ~~~arkyy~~alkl~~~ 223 (289)
T KOG3060|consen 207 LELARKYYERALKLNPK 223 (289)
T ss_pred HHHHHHHHHHHHHhChH
Confidence 67788899998876663
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.09 E-value=4.7e-05 Score=66.99 Aligned_cols=110 Identities=13% Similarity=0.098 Sum_probs=93.7
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHH
Q 048578 363 VEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYV 440 (519)
Q Consensus 363 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 440 (519)
-+-|...|..|...|...|+...|..-|.+. .+.| +...+..+..++..+.+.....++..+++++++.+|.|.++..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 4568899999999999999999999999988 5554 4556666667655544567788999999999999999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhCCCccCCc
Q 048578 441 LMSNIYAAKAQWDDAGKMRRLMKERNIVKNPG 472 (519)
Q Consensus 441 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 472 (519)
.|+..+...|++.+|...++.|.+.....+|.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 99999999999999999999999877765444
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.07 E-value=7.7e-06 Score=47.46 Aligned_cols=33 Identities=24% Similarity=0.494 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC
Q 048578 196 VTWTAMINGHVKQKNYREGIDLFRKMRDSGVEV 228 (519)
Q Consensus 196 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 228 (519)
.+|+.++.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888899999999999999999988888876
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.02 E-value=4.6e-05 Score=56.59 Aligned_cols=94 Identities=20% Similarity=0.175 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 048578 369 HYGCLVDLLCRARLLDEAYEVIRNM-PMEPNA-VLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIY 446 (519)
Q Consensus 369 ~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 446 (519)
.+..++..+...|++++|...+++. ...|+. ..+..+...+.. .++++.|.+.+++..+..|.+...+..++.++
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYK---LGKYEEALEDYEKALELDPDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhCCCcchhHHHHHHHHH
Confidence 3455677777888888888888876 444543 556666666777 78889999999988888888888888888899
Q ss_pred HhcCCchHHHHHHHHHHhC
Q 048578 447 AAKAQWDDAGKMRRLMKER 465 (519)
Q Consensus 447 ~~~g~~~~A~~~~~~m~~~ 465 (519)
...|++++|...+++..+.
T Consensus 79 ~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 79 YKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHhHHHHHHHHHHHHcc
Confidence 9999999999888887653
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0001 Score=57.65 Aligned_cols=93 Identities=14% Similarity=0.028 Sum_probs=45.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCC---CchHHH
Q 048578 370 YGCLVDLLCRARLLDEAYEVIRNM-PMEPN----AVLWGSLLTACASADDGANVELAEIAMERLIKLEPFN---DGNYVL 441 (519)
Q Consensus 370 ~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~ 441 (519)
+..++..+.+.|++++|.+.|+.+ ...|+ ...+..+...+.. .|+++.|...++.+.+..|.+ +.++..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYA---QGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHh---hccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 334444445555555555555444 21222 1233334444444 555555555555555554442 334555
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhC
Q 048578 442 MSNIYAAKAQWDDAGKMRRLMKER 465 (519)
Q Consensus 442 l~~~~~~~g~~~~A~~~~~~m~~~ 465 (519)
++.++.+.|++++|.+.++++.+.
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHH
Confidence 555555555555555555555544
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00013 Score=56.96 Aligned_cols=105 Identities=12% Similarity=0.045 Sum_probs=65.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHH
Q 048578 333 TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEP-NVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPN----AVLWGSLL 406 (519)
Q Consensus 333 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~----~~~~~~ll 406 (519)
++..++..+.+.|++++|...|..+.....-.+ ....+..+..++.+.|++++|...|+.+ ...|+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 445556666667777777777777765321111 1334555677777777777777777766 32333 34455555
Q ss_pred HHHccccCCCCHHHHHHHHHHHHhhCCCCCchHH
Q 048578 407 TACASADDGANVELAEIAMERLIKLEPFNDGNYV 440 (519)
Q Consensus 407 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 440 (519)
..+.. .|+.+.|...++++++..|+++....
T Consensus 84 ~~~~~---~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 84 MSLQE---LGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHH---hCChHHHHHHHHHHHHHCcCChhHHH
Confidence 66666 77778888888887777777655443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00011 Score=64.34 Aligned_cols=100 Identities=13% Similarity=0.077 Sum_probs=45.8
Q ss_pred hccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHccccCCCCHH
Q 048578 342 SHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPNA-VLWGSLLTACASADDGANVE 419 (519)
Q Consensus 342 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~~~~~~~~ 419 (519)
.+.+++++|+..|.+..+ -.+-|...|..-..+|.+.|.++.|.+-.+.. .+.|+. .+|..|-.+|.. .|+++
T Consensus 92 m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~---~gk~~ 166 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA---LGKYE 166 (304)
T ss_pred HHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc---cCcHH
Confidence 344445555555544444 22233344444444555555555554444443 444432 244445445544 45555
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHH
Q 048578 420 LAEIAMERLIKLEPFNDGNYVLMSNIY 446 (519)
Q Consensus 420 ~a~~~~~~~~~~~p~~~~~~~~l~~~~ 446 (519)
+|++.|+++++++|+|......|-.+-
T Consensus 167 ~A~~aykKaLeldP~Ne~~K~nL~~Ae 193 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESYKSNLKIAE 193 (304)
T ss_pred HHHHHHHhhhccCCCcHHHHHHHHHHH
Confidence 555555555555555444444433333
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.018 Score=53.19 Aligned_cols=123 Identities=15% Similarity=0.064 Sum_probs=83.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 048578 267 LGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGL 346 (519)
Q Consensus 267 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 346 (519)
+.+..+.-+...|+...|.++-.+..-|+...|...+.+++..++|++-..+... .- +..-|..++.+|.+.|+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK--sPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----KK--SPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC--CCCChHHHHHHHHHCCC
Confidence 3444456667778888888888888778888888888888888888877765432 11 23667778888888888
Q ss_pred HHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048578 347 IEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTAC 409 (519)
Q Consensus 347 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~ 409 (519)
..+|..+..++. +..-+..|.++|++.+|.+.--+.+ |...+..+...+
T Consensus 253 ~~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~~ 301 (319)
T PF04840_consen 253 KKEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKRC 301 (319)
T ss_pred HHHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHHC
Confidence 888887776631 1345677788888888877655532 344444444333
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00098 Score=54.15 Aligned_cols=115 Identities=15% Similarity=0.103 Sum_probs=56.9
Q ss_pred cCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCC--hhHHHHHHHHHHhcCCh
Q 048578 309 HGCGEEAVKMFWQMQMSGIKPD---DVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPN--VKHYGCLVDLLCRARLL 383 (519)
Q Consensus 309 ~g~~~~a~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~ 383 (519)
.++...+...++.+.... +.+ ......+...+...|++++|...|+.+... ...|+ ......+...+...|++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHcCCH
Confidence 555555655566655432 111 123333445555666666666666666552 21111 12233455556666666
Q ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHccccCCCCHHHHHHHHHHH
Q 048578 384 DEAYEVIRNMPM-EPNAVLWGSLLTACASADDGANVELAEIAMERL 428 (519)
Q Consensus 384 ~~A~~~~~~~~~-~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~ 428 (519)
++|+..++...- ......+......+.. .|+.++|...|+++
T Consensus 102 d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~---~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 102 DEALATLQQIPDEAFKALAAELLGDIYLA---QGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHHHH---CCCHHHHHHHHHHh
Confidence 666666655411 1222333444444555 66666666666553
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.3e-05 Score=58.09 Aligned_cols=77 Identities=17% Similarity=0.210 Sum_probs=41.6
Q ss_pred CChHHHHHHHHhC-CCCC---CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHH
Q 048578 381 RLLDEAYEVIRNM-PMEP---NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAG 456 (519)
Q Consensus 381 ~~~~~A~~~~~~~-~~~p---~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 456 (519)
|+++.|+.+++++ ...| +...+..+..++.+ .|++++|..++++ .+.+|.+......++.++.+.|++++|+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~---~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ---QGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH---TTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH---CCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 4555555555555 2222 23333335555566 6666666666666 5455555555555566666666666666
Q ss_pred HHHHH
Q 048578 457 KMRRL 461 (519)
Q Consensus 457 ~~~~~ 461 (519)
+++++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66654
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00039 Score=63.32 Aligned_cols=132 Identities=13% Similarity=0.129 Sum_probs=100.1
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHH
Q 048578 297 CTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTA-CSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVD 375 (519)
Q Consensus 297 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 375 (519)
.+|-.++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+. ++.+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 367788888888889999999999998543 3333444444444 33357778899999999984 5567788999999
Q ss_pred HHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC
Q 048578 376 LLCRARLLDEAYEVIRNM-PMEPNA----VLWGSLLTACASADDGANVELAEIAMERLIKLEPF 434 (519)
Q Consensus 376 ~~~~~~~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (519)
.+...++.+.|..+|++. ..-|.. ..|...+..-.. .|+.+.+.++.+++.+.-|.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~---~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESK---YGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHH---HS-HHHHHHHHHHHHHHTTT
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHhhh
Confidence 999999999999999988 333333 489999988888 89999999999999988877
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.85 E-value=4e-05 Score=53.14 Aligned_cols=65 Identities=22% Similarity=0.197 Sum_probs=57.2
Q ss_pred CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC-CchHHHHHHHHHHhC
Q 048578 398 NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKA-QWDDAGKMRRLMKER 465 (519)
Q Consensus 398 ~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~ 465 (519)
+..+|..+...+.. .|++++|+..|+++++.+|.++.+|..++.+|...| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~---~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQ---QGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 45677778888888 899999999999999999999999999999999999 799999999887653
|
... |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0016 Score=59.68 Aligned_cols=149 Identities=15% Similarity=0.197 Sum_probs=75.2
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHc-CChHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHhccC
Q 048578 273 DMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIH-GCGEEAVKMFWQMQM----SGIKPD--DVTLIAVLTACSHAG 345 (519)
Q Consensus 273 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~----~g~~p~--~~~~~~l~~~~~~~g 345 (519)
..|...|++..|-.++.. +...|... |++++|++.|++..+ .| .+. ...+..+...+.+.|
T Consensus 102 ~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~ 169 (282)
T PF14938_consen 102 EIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLG 169 (282)
T ss_dssp HHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhC
Confidence 345556665555544332 34444444 666666666666532 22 111 125556666777777
Q ss_pred cHHHHHHHHHHcHHhcCC----CCChh-HHHHHHHHHHhcCChHHHHHHHHhC-CCCC----C--HHHHHHHHHHHcccc
Q 048578 346 LIEKGKEIFYNMRRDYKV----EPNVK-HYGCLVDLLCRARLLDEAYEVIRNM-PMEP----N--AVLWGSLLTACASAD 413 (519)
Q Consensus 346 ~~~~a~~~~~~~~~~~~~----~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p----~--~~~~~~ll~~~~~~~ 413 (519)
++++|.++|+++....-- ..+.. .|-..+-++...||...|.+.+++. ...| + ......|+.++-. +
T Consensus 170 ~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~-~ 248 (282)
T PF14938_consen 170 RYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEE-G 248 (282)
T ss_dssp -HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHT-T
T ss_pred CHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHh-C
Confidence 888888877777652111 11121 2233344556677777777777765 3322 2 2245555555543 3
Q ss_pred CCCCHHHHHHHHHHHHhhCCC
Q 048578 414 DGANVELAEIAMERLIKLEPF 434 (519)
Q Consensus 414 ~~~~~~~a~~~~~~~~~~~p~ 434 (519)
+...++.+..-|+.+.+++|.
T Consensus 249 D~e~f~~av~~~d~~~~ld~w 269 (282)
T PF14938_consen 249 DVEAFTEAVAEYDSISRLDNW 269 (282)
T ss_dssp -CCCHHHHCHHHTTSS---HH
T ss_pred CHHHHHHHHHHHcccCccHHH
Confidence 355666666666666555544
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.81 E-value=2.9e-05 Score=43.86 Aligned_cols=31 Identities=23% Similarity=0.614 Sum_probs=28.4
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 048578 97 FAFNTVIRGYAEAGLGHRGIQLYTQMIGNGL 127 (519)
Q Consensus 97 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 127 (519)
.+||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999998874
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00019 Score=67.82 Aligned_cols=109 Identities=14% Similarity=0.045 Sum_probs=90.9
Q ss_pred HHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHcccc
Q 048578 336 AVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASAD 413 (519)
Q Consensus 336 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~ 413 (519)
.-...+...|+++.|+..|+++.+ ..+.+...|..+..+|...|++++|+..++++ .+.| +...|..+..+|..
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~-- 82 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK-- 82 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH--
Confidence 345567788999999999999988 34456778889999999999999999999998 6667 45677778888888
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhc
Q 048578 414 DGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAK 449 (519)
Q Consensus 414 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 449 (519)
.|++++|...|+++++++|.++.+...+..+..+.
T Consensus 83 -lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 83 -LEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred -hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999988877776654444
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00029 Score=59.24 Aligned_cols=80 Identities=15% Similarity=0.061 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHH
Q 048578 369 HYGCLVDLLCRARLLDEAYEVIRNM-PMEPN----AVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMS 443 (519)
Q Consensus 369 ~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 443 (519)
.+..+...+...|++++|...|++. ...|+ ...+..+...+.. .|++++|...++++++..|.+...+..++
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~lg 113 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYAS---NGEHDKALEYYHQALELNPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 4455555556666666666666555 22222 2355555555666 67777777777777777777677777777
Q ss_pred HHHHhcCC
Q 048578 444 NIYAAKAQ 451 (519)
Q Consensus 444 ~~~~~~g~ 451 (519)
.+|...|+
T Consensus 114 ~~~~~~g~ 121 (172)
T PRK02603 114 VIYHKRGE 121 (172)
T ss_pred HHHHHcCC
Confidence 77766665
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.032 Score=52.07 Aligned_cols=375 Identities=12% Similarity=0.076 Sum_probs=215.2
Q ss_pred CchHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCCCCCc---chHHHHHHHHHhcCChhHHHHH
Q 048578 42 HLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIINPST---FAFNTVIRGYAEAGLGHRGIQL 118 (519)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~ll~~~~~~g~~~~a~~~ 118 (519)
-++|..++-+.+++. |.|..+|-+|+..|... +..++-.++++++..|-+ .+|..-|++-....++.....+
T Consensus 24 i~~D~lrLRerIkdN--PtnI~S~fqLiq~~~tq---~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~l 98 (660)
T COG5107 24 IHGDELRLRERIKDN--PTNILSYFQLIQYLETQ---ESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESL 98 (660)
T ss_pred CCchHHHHHHHhhcC--chhHHHHHHHHHHHhhh---hhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHH
Confidence 344556666666543 66788999999999998 999999999999987765 5788888888888999999999
Q ss_pred HHHHHhCCCCCCcchHHHHHHHHcCcc-----c----hHHHHHHHHHhCCCCCc-hhHHHHHHHH---HHhcC------C
Q 048578 119 YTQMIGNGLDPDSFTYPILLKACGDLR-----Q----VKGVHSLVVKSKDFNSV-IHSLTRLITF---YCNFG------D 179 (519)
Q Consensus 119 ~~~m~~~g~~p~~~~~~~ll~~~~~~~-----~----~~~~~~~~~~~~~~~~~-~~~~~~l~~~---~~~~g------~ 179 (519)
|.+.....+. ...|..-+.-..+.. + .-++++.+.....+.|- ...|+..+.. .-..| +
T Consensus 99 f~rCL~k~l~--ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqr 176 (660)
T COG5107 99 FGRCLKKSLN--LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQR 176 (660)
T ss_pred HHHHHhhhcc--HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHH
Confidence 9998886544 444444444333322 1 55666666665445553 2333333322 11222 3
Q ss_pred hHHHHHHHhcCCC-C--c---------------------------hhHH----------HHHHHHHHHcC----------
Q 048578 180 VKSAQLLFDQMTE-K--N---------------------------VVTW----------TAMINGHVKQK---------- 209 (519)
Q Consensus 180 ~~~A~~~~~~~~~-~--~---------------------------~~~~----------~~li~~~~~~~---------- 209 (519)
++...+.+.++.. | + ...| ..+..++....
T Consensus 177 id~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~ 256 (660)
T COG5107 177 IDKIRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKA 256 (660)
T ss_pred HHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccc
Confidence 3344444444431 0 0 0000 00111111000
Q ss_pred ------------------------C--hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCc
Q 048578 210 ------------------------N--YREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIIL 263 (519)
Q Consensus 210 ------------------------~--~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 263 (519)
+ .....-++++.... +......|----..+...+|-+.|.+.... |.+.
T Consensus 257 ~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~r----g~~~ 331 (660)
T COG5107 257 ARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVER----GIEM 331 (660)
T ss_pred cccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHh----cccC
Confidence 0 00011111111111 111222332222233444555555544333 2222
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhcC---------------------------------CCChhhHHHHHHHHHHcC
Q 048578 264 NDKLGAALTDMYAKCGYIEEALRVFKIVL---------------------------------EKNVCTWNSIIGGLAIHG 310 (519)
Q Consensus 264 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---------------------------------~~~~~~~~~l~~~~~~~g 310 (519)
.+..--.+...|-..++-+.....|++.. .+-..+|...+....+..
T Consensus 332 spsL~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~ 411 (660)
T COG5107 332 SPSLTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKR 411 (660)
T ss_pred CCchheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 22221222333333334333333333321 011235666777777888
Q ss_pred ChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 048578 311 CGEEAVKMFWQMQMSG-IKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEV 389 (519)
Q Consensus 311 ~~~~a~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 389 (519)
..+.|..+|-+..+.| +.++...+++++..++ .|+...|..+|+.-... ++.+..--+..+..+.+.++-..|..+
T Consensus 412 Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraL 488 (660)
T COG5107 412 GLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARAL 488 (660)
T ss_pred hHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHH
Confidence 8888999999988888 5677778888887655 57788888888877663 323333344567777888888889888
Q ss_pred HHhC--CCCCC--HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC
Q 048578 390 IRNM--PMEPN--AVLWGSLLTACASADDGANVELAEIAMERLIKLEPF 434 (519)
Q Consensus 390 ~~~~--~~~p~--~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (519)
|+.. .+..+ ...|..+|..-.. .|+...+..+-+++.+.-|.
T Consensus 489 Fetsv~r~~~~q~k~iy~kmi~YEs~---~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 489 FETSVERLEKTQLKRIYDKMIEYESM---VGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHhHHHHHHhhhhHHHHHHHHHHHh---hcchHHHHhHHHHHHHHcCc
Confidence 8865 33333 4578888888777 88888888888888887776
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.78 E-value=4.9e-05 Score=51.94 Aligned_cols=58 Identities=21% Similarity=0.224 Sum_probs=48.2
Q ss_pred HHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048578 406 LTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 406 l~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
...+.. .|++++|...|+++++..|.++.++..++.++...|++++|...|+++.+..
T Consensus 4 a~~~~~---~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 4 ARALYQ---QGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHH---CTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHH---cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 345666 8889999999999999999989999999999999999999999998887644
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00045 Score=65.36 Aligned_cols=106 Identities=10% Similarity=-0.023 Sum_probs=87.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcC
Q 048578 302 IIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRAR 381 (519)
Q Consensus 302 l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 381 (519)
-...+...|++++|+..|+++++.. +-+...|..+..+|...|++++|+..++++.. -.+.+...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhC
Confidence 3556778899999999999999854 44566888899999999999999999999987 33456778889999999999
Q ss_pred ChHHHHHHHHhC-CCCCCHHHHHHHHHHHc
Q 048578 382 LLDEAYEVIRNM-PMEPNAVLWGSLLTACA 410 (519)
Q Consensus 382 ~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~ 410 (519)
++++|...|++. .+.|+...+...+..|.
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~ 114 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECD 114 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999998 77787766665555443
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00054 Score=50.61 Aligned_cols=89 Identities=16% Similarity=0.039 Sum_probs=41.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhc
Q 048578 301 SIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRA 380 (519)
Q Consensus 301 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 380 (519)
.+...+...|++++|...+++..+.. +.+...+..+..++...|+++.|.+.++.... ..+.+...+..+...+...
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALE--LDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCcchhHHHHHHHHHHHH
Confidence 34444444555555555555554431 11223444444455555555555555555444 1122223444444455555
Q ss_pred CChHHHHHHHHh
Q 048578 381 RLLDEAYEVIRN 392 (519)
Q Consensus 381 ~~~~~A~~~~~~ 392 (519)
|++++|...+..
T Consensus 82 ~~~~~a~~~~~~ 93 (100)
T cd00189 82 GKYEEALEAYEK 93 (100)
T ss_pred HhHHHHHHHHHH
Confidence 555555544443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.73 E-value=4.2e-05 Score=43.15 Aligned_cols=30 Identities=30% Similarity=0.757 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 048578 197 TWTAMINGHVKQKNYREGIDLFRKMRDSGV 226 (519)
Q Consensus 197 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 226 (519)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 678888888888888888888888877663
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0023 Score=63.40 Aligned_cols=138 Identities=14% Similarity=0.024 Sum_probs=63.2
Q ss_pred CChhhHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcc--------CcHHHHHHHHHHcHH
Q 048578 294 KNVCTWNSIIGGLAIH-----GCGEEAVKMFWQMQMSGIKPDDV-TLIAVLTACSHA--------GLIEKGKEIFYNMRR 359 (519)
Q Consensus 294 ~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~--------g~~~~a~~~~~~~~~ 359 (519)
.+..+|...+.+.... ++...|..+|++..+. .|+.. .+..+..++... +++..+.+.......
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 3556666666654332 2255677777777663 45532 333332222111 112222222222211
Q ss_pred hcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCC
Q 048578 360 DYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFND 436 (519)
Q Consensus 360 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 436 (519)
....+.+...|..+.-.+...|++++|...++++ .+.|+...|..+...+.. .|+.++|.+.++++..++|.++
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~---~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYEL---KGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCCc
Confidence 0012223344444444444455555555555555 444554455555555555 5555555555555555555544
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0014 Score=55.00 Aligned_cols=129 Identities=13% Similarity=0.046 Sum_probs=71.2
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHH
Q 048578 297 CTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPD--DVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLV 374 (519)
Q Consensus 297 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 374 (519)
..+..+...+...|++++|...|++..+.+..+. ...+..+..++.+.|++++|...+.+.... .+.+...+..+.
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg 113 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHH
Confidence 3455555666666666666666666654322221 235556666666666666666666666551 222344455555
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 048578 375 DLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQ 451 (519)
Q Consensus 375 ~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 451 (519)
.++...|+...+..-++.. ...+++|.+.++++.+.+|++ +..++..+...|+
T Consensus 114 ~~~~~~g~~~~a~~~~~~A---------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEA---------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHcCChHhHhhCHHHH---------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 5555555544443222211 112577788888888888775 5555555554443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00044 Score=57.92 Aligned_cols=94 Identities=12% Similarity=-0.075 Sum_probs=72.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHH
Q 048578 366 NVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPN----AVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYV 440 (519)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 440 (519)
....|..++..+...|++++|...|++. .+.|+ ..++..+...+.. .|++++|...++++.+..|.....+.
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~---~g~~~eA~~~~~~Al~~~~~~~~~~~ 110 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS---NGEHTKALEYYFQALERNPFLPQALN 110 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCcCcHHHHH
Confidence 3556677777788888888888888877 33332 2467777777888 89999999999999999988888888
Q ss_pred HHHHHHH-------hcCCchHHHHHHHHH
Q 048578 441 LMSNIYA-------AKAQWDDAGKMRRLM 462 (519)
Q Consensus 441 ~l~~~~~-------~~g~~~~A~~~~~~m 462 (519)
.++.+|. ..|++++|...+++-
T Consensus 111 ~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 111 NMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8888888 778888666655544
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00014 Score=63.64 Aligned_cols=91 Identities=18% Similarity=0.199 Sum_probs=79.0
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCc
Q 048578 375 DLLCRARLLDEAYEVIRNM-PMEPN-AVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQW 452 (519)
Q Consensus 375 ~~~~~~~~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 452 (519)
.-+.+.+++.+|+..|.+. .+.|+ .+-|..=..+|.+ .|.++.|++-.+.+++++|....+|..|+.+|...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~---Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSK---LGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH---hcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence 3466789999999999988 88885 4556666667999 99999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhCCCc
Q 048578 453 DDAGKMRRLMKERNIV 468 (519)
Q Consensus 453 ~~A~~~~~~m~~~~~~ 468 (519)
++|.+.|++..+....
T Consensus 166 ~~A~~aykKaLeldP~ 181 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPD 181 (304)
T ss_pred HHHHHHHHhhhccCCC
Confidence 9999999887764443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0065 Score=55.66 Aligned_cols=204 Identities=13% Similarity=0.116 Sum_probs=109.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCC-------C--chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 048578 165 HSLTRLITFYCNFGDVKSAQLLFDQMTE-------K--NVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVS 235 (519)
Q Consensus 165 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 235 (519)
..|......|-..|++++|...|.+... + -...|.....+|.+. ++++|...+++.
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A-------------- 100 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKA-------------- 100 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHH--------------
Confidence 3455556677777777777777665422 0 011233333333332 555555544443
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhc-CCHHHHHHHHhhcCC-----CC----hhhHHHHHHH
Q 048578 236 VLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKC-GYIEEALRVFKIVLE-----KN----VCTWNSIIGG 305 (519)
Q Consensus 236 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~ 305 (519)
+..|...|++..+-..+.. +...|... |++++|++.|++..+ .. ...+..+...
T Consensus 101 -~~~y~~~G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 101 -IEIYREAGRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL 164 (282)
T ss_dssp -HHHHHHCT-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred -HHHHHhcCcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence 3344555555554443333 33445555 666666666665532 11 2345567778
Q ss_pred HHHcCChHHHHHHHHHHHHCCC-----CCCHH-HHHHHHHHHhccCcHHHHHHHHHHcHHhc-CCCCC--hhHHHHHHHH
Q 048578 306 LAIHGCGEEAVKMFWQMQMSGI-----KPDDV-TLIAVLTACSHAGLIEKGKEIFYNMRRDY-KVEPN--VKHYGCLVDL 376 (519)
Q Consensus 306 ~~~~g~~~~a~~~~~~m~~~g~-----~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~--~~~~~~l~~~ 376 (519)
+.+.|++++|.++|++....-. +.+.. .|...+-++...||...|...|++..... ++..+ ......|+.+
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A 244 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEA 244 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHH
Confidence 8899999999999998866432 22222 33334446677789999999999886521 22222 3455566777
Q ss_pred HHh--cCChHHHHHHHHhCCCCCCHH
Q 048578 377 LCR--ARLLDEAYEVIRNMPMEPNAV 400 (519)
Q Consensus 377 ~~~--~~~~~~A~~~~~~~~~~p~~~ 400 (519)
+-. ...+.+|+.-|+.+. +.|..
T Consensus 245 ~~~~D~e~f~~av~~~d~~~-~ld~w 269 (282)
T PF14938_consen 245 YEEGDVEAFTEAVAEYDSIS-RLDNW 269 (282)
T ss_dssp HHTT-CCCHHHHCHHHTTSS----HH
T ss_pred HHhCCHHHHHHHHHHHcccC-ccHHH
Confidence 654 345777777777773 33444
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0094 Score=48.56 Aligned_cols=131 Identities=12% Similarity=0.053 Sum_probs=104.6
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC------CCCCCHH
Q 048578 327 IKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM------PMEPNAV 400 (519)
Q Consensus 327 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~------~~~p~~~ 400 (519)
..|+..--..|..+..+.|+..+|...|++... .-+..|......+.++....++...|...+++. +..||
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd-- 161 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD-- 161 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--
Confidence 467777778888899999999999999999887 244567777888888999999999999999887 22333
Q ss_pred HHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048578 401 LWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 401 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
+...+.+.+.. .|.+..|+..|+.++...|. +.........+.++|+..+|..-+..+.+
T Consensus 162 ~~Ll~aR~laa---~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 162 GHLLFARTLAA---QGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred chHHHHHHHHh---cCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 34445667888 88999999999999999887 77788888889999988888776555543
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0013 Score=48.83 Aligned_cols=82 Identities=17% Similarity=0.058 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHhccC--------ChHHHHHHHHHHHHcCCCcchhH
Q 048578 197 TWTAMINGHVKQKNYREGIDLFRKMRDSGV-EVNELTLVSVLSACANLG--------ASELGKWVHEFVNKNCIILNDKL 267 (519)
Q Consensus 197 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 267 (519)
+....|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ..-....+++.+...+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 334556667777999999999999999999 899999999999877654 23345678888888899999999
Q ss_pred HHHHHHHHHhc
Q 048578 268 GAALTDMYAKC 278 (519)
Q Consensus 268 ~~~l~~~~~~~ 278 (519)
|+.++..+.+.
T Consensus 107 Ynivl~~Llkg 117 (120)
T PF08579_consen 107 YNIVLGSLLKG 117 (120)
T ss_pred HHHHHHHHHHh
Confidence 99988877653
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.60 E-value=7.6e-05 Score=51.56 Aligned_cols=53 Identities=17% Similarity=0.296 Sum_probs=46.9
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 415 GANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
.|++++|.+.++++.+.+|.+..++..++.+|.+.|++++|.++++++.....
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 68899999999999999999999999999999999999999999988766444
|
... |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00036 Score=63.59 Aligned_cols=130 Identities=12% Similarity=-0.063 Sum_probs=95.0
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHcH---HhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-------C-CCCCH
Q 048578 332 VTLIAVLTACSHAGLIEKGKEIFYNMR---RDYKVEP-NVKHYGCLVDLLCRARLLDEAYEVIRNM-------P-MEPNA 399 (519)
Q Consensus 332 ~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~-~~p~~ 399 (519)
..|..|...|.-.|+++.|+...+.-. +++|-.. ....+..+..++.-.|+++.|.+.|+.. | .....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 367777777778899999987665322 2244332 2456778899999999999999988765 2 22345
Q ss_pred HHHHHHHHHHccccCCCCHHHHHHHHHHHHhh----C--CCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048578 400 VLWGSLLTACASADDGANVELAEIAMERLIKL----E--PFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 400 ~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
.+..+|...|.- ..++++|+.++.+=+.+ + ....+++..|+.+|...|.-++|+...+.-.+
T Consensus 276 QscYSLgNtytl---l~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTL---LKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 577778888888 77899999988775542 2 22567888999999999999999988776654
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00025 Score=49.72 Aligned_cols=58 Identities=14% Similarity=0.094 Sum_probs=52.3
Q ss_pred HHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 407 TACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 407 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
..|.. .++++.|.+.++++++.+|.++..+...+.++.+.|++++|.+.+++..+.+.
T Consensus 3 ~~~~~---~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQ---QEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHh---CCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 45666 88999999999999999999999999999999999999999999999987554
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0035 Score=57.48 Aligned_cols=159 Identities=14% Similarity=0.066 Sum_probs=91.2
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChh-------------HHH
Q 048578 305 GLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVK-------------HYG 371 (519)
Q Consensus 305 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-------------~~~ 371 (519)
++.-.|+.++|..+--...+.. ..+......-..++.-.++.+.|...|++... ..|+.. .+.
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHHHH
Confidence 4445666666666665555432 11222222222234445666666666666554 233321 122
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCCC-----HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 048578 372 CLVDLLCRARLLDEAYEVIRNM-PMEPN-----AVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNI 445 (519)
Q Consensus 372 ~l~~~~~~~~~~~~A~~~~~~~-~~~p~-----~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 445 (519)
.-..-..+.|++.+|.+.|.+. ++.|+ ...|.....+..+ .|+..+|+.--+++.+++|.-..+|..-+.+
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~r---Lgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIR---LGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcc---cCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 2223345677777777777776 44443 3344444444555 7777777777777777777666677777777
Q ss_pred HHhcCCchHHHHHHHHHHhCCCccC
Q 048578 446 YAAKAQWDDAGKMRRLMKERNIVKN 470 (519)
Q Consensus 446 ~~~~g~~~~A~~~~~~m~~~~~~~~ 470 (519)
+.-.++|++|.+-+++..+..-.+.
T Consensus 331 ~l~le~~e~AV~d~~~a~q~~~s~e 355 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQLEKDCE 355 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccc
Confidence 7777777777777777665544433
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00024 Score=51.48 Aligned_cols=81 Identities=17% Similarity=0.173 Sum_probs=51.2
Q ss_pred cCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHH
Q 048578 309 HGCGEEAVKMFWQMQMSGIK-PDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAY 387 (519)
Q Consensus 309 ~g~~~~a~~~~~~m~~~g~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 387 (519)
.|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++. .+. +. .+......+..++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~-~~-~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL-DP-SNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH-HH-CHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC-CC-CCHHHHHHHHHHHHHhCCHHHHH
Confidence 57778888888887765321 2344555577788888888888888877 221 11 22344445577788888888888
Q ss_pred HHHHh
Q 048578 388 EVIRN 392 (519)
Q Consensus 388 ~~~~~ 392 (519)
++|++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77764
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0016 Score=48.32 Aligned_cols=79 Identities=14% Similarity=0.157 Sum_probs=61.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccC--------cHHHHHHHHHHcHHhcCCCCChhHH
Q 048578 300 NSIIGGLAIHGCGEEAVKMFWQMQMSGI-KPDDVTLIAVLTACSHAG--------LIEKGKEIFYNMRRDYKVEPNVKHY 370 (519)
Q Consensus 300 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~ 370 (519)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|+.+.. .+++|+..+|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~-~~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILS-NKLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHH-hccCCcHHHH
Confidence 3345566667999999999999999999 899999999998876543 34556778888887 4788888888
Q ss_pred HHHHHHHHh
Q 048578 371 GCLVDLLCR 379 (519)
Q Consensus 371 ~~l~~~~~~ 379 (519)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 888877654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.074 Score=49.20 Aligned_cols=111 Identities=14% Similarity=0.165 Sum_probs=87.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHccc
Q 048578 333 TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASA 412 (519)
Q Consensus 333 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~ 412 (519)
+.+..+.-|...|+...|.++-.+. ++ |+..-|...+.+|+..++|++-.++... +-++..|..++.+|..
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~- 249 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK- 249 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH-
Confidence 5556667777888888777765444 45 8888999999999999999988887654 3345778889999999
Q ss_pred cCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 048578 413 DDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMK 463 (519)
Q Consensus 413 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (519)
.|+..+|..+..+ ..+..-+..|.++|+|.+|.+.--+.+
T Consensus 250 --~~~~~eA~~yI~k---------~~~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 250 --YGNKKEASKYIPK---------IPDEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred --CCCHHHHHHHHHh---------CChHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 8999999998887 122677889999999999988765544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.015 Score=51.58 Aligned_cols=55 Identities=16% Similarity=0.096 Sum_probs=27.1
Q ss_pred HHHHHhccCcHHHHHHHHHHcHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHH
Q 048578 337 VLTACSHAGLIEKGKEIFYNMRRDYKVEP-NVKHYGCLVDLLCRARLLDEAYEVIR 391 (519)
Q Consensus 337 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 391 (519)
+.+-|.+.|.+..|..-++.+.+++.-.| .......++.+|...|..++|..+..
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 34445555555555555555555332222 22334445555555666555555443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.001 Score=63.18 Aligned_cols=118 Identities=10% Similarity=0.006 Sum_probs=86.1
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcCCC-C-----chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 048578 161 NSVIHSLTRLITFYCNFGDVKSAQLLFDQMTE-K-----NVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLV 234 (519)
Q Consensus 161 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 234 (519)
+.+......+++.+....+++.+..++.+... | -..|..++++.|...|..+.++.+++.=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 34455555666666666777777777766654 2 13355688888888888888888888888888888888888
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhc
Q 048578 235 SVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKC 278 (519)
Q Consensus 235 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 278 (519)
.+++.+.+.|++..|.++...|...+...+..++...+.++.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888888877777666666666555555554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.081 Score=48.57 Aligned_cols=274 Identities=16% Similarity=0.171 Sum_probs=164.5
Q ss_pred cCChHHHHHHHhcCCC---CchhHHHHHHH--HHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH----HhccCChH
Q 048578 177 FGDVKSAQLLFDQMTE---KNVVTWTAMIN--GHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSA----CANLGASE 247 (519)
Q Consensus 177 ~g~~~~A~~~~~~~~~---~~~~~~~~li~--~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~----~~~~~~~~ 247 (519)
.|+-..|.++-.+..+ .|....-.++. +-.-.|+++.|.+-|+.|.. |+.|-..-+++ ..+.|+.+
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~Gare 171 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGARE 171 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHH
Confidence 4555555555444322 33333333333 23445777777777777764 22222222222 23556666
Q ss_pred HHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhc-----CCCChhh--HHHHHHHH---HHcCChHHHHH
Q 048578 248 LGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIV-----LEKNVCT--WNSIIGGL---AIHGCGEEAVK 317 (519)
Q Consensus 248 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-----~~~~~~~--~~~l~~~~---~~~g~~~~a~~ 317 (519)
.|..+-+..-... +.-.....+.+...+..|+++.|+++++.- +++++.- -..|+.+- .-..+...|..
T Consensus 172 aAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~ 250 (531)
T COG3898 172 AARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARD 250 (531)
T ss_pred HHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 6666665554433 233445566677777777777777777643 2333321 11222211 11234555666
Q ss_pred HHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC---
Q 048578 318 MFWQMQMSGIKPDDV-TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM--- 393 (519)
Q Consensus 318 ~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--- 393 (519)
.-.+..+ +.||.. .-..-..++.+.|+..++-.+++.+=+ ..|.+..+.. ..+.+.|+ .++.-++..
T Consensus 251 ~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK---~ePHP~ia~l--Y~~ar~gd--ta~dRlkRa~~L 321 (531)
T COG3898 251 DALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK---AEPHPDIALL--YVRARSGD--TALDRLKRAKKL 321 (531)
T ss_pred HHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh---cCCChHHHHH--HHHhcCCC--cHHHHHHHHHHH
Confidence 5555444 567755 444556789999999999999999865 3566555432 22334444 444444333
Q ss_pred -CCCCCH-HHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhc-CCchHHHHHHHHHHhCCCcc
Q 048578 394 -PMEPNA-VLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAK-AQWDDAGKMRRLMKERNIVK 469 (519)
Q Consensus 394 -~~~p~~-~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~~ 469 (519)
..+||. .+...+..+... .|++..|..--+.+....|. .++|..|+++-... |+-.++...+-+-.+.--.|
T Consensus 322 ~slk~nnaes~~~va~aAld---a~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 322 ESLKPNNAESSLAVAEAALD---AGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred HhcCccchHHHHHHHHHHHh---ccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 556654 466667777777 89999999999999999997 78899999987654 99999999988876644433
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.015 Score=46.66 Aligned_cols=92 Identities=8% Similarity=-0.094 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHH
Q 048578 298 TWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLL 377 (519)
Q Consensus 298 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (519)
....+...+...|++++|..+|+-+..-. +-+...|..|.-+|...|++++|+..|..... .. +-++..+-.+..++
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~-L~-~ddp~~~~~ag~c~ 113 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ-IK-IDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cC-CCCchHHHHHHHHH
Confidence 33334444445555555555555544321 22233444555555555555555555555544 11 23344445555555
Q ss_pred HhcCChHHHHHHHHh
Q 048578 378 CRARLLDEAYEVIRN 392 (519)
Q Consensus 378 ~~~~~~~~A~~~~~~ 392 (519)
...|+.+.|.+.|+.
T Consensus 114 L~lG~~~~A~~aF~~ 128 (157)
T PRK15363 114 LACDNVCYAIKALKA 128 (157)
T ss_pred HHcCCHHHHHHHHHH
Confidence 555555555555544
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0011 Score=60.31 Aligned_cols=129 Identities=13% Similarity=0.137 Sum_probs=100.2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHh-cCChHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 048578 332 VTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCR-ARLLDEAYEVIRNM--PMEPNAVLWGSLLTA 408 (519)
Q Consensus 332 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~--~~~p~~~~~~~ll~~ 408 (519)
.+|..+++.+-+.+..+.|..+|.+..+. -..+...|...+..-.. .++.+.|..+|+.. .+..+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46888899999999999999999999863 22344556555555344 56777799999998 444567788888888
Q ss_pred HccccCCCCHHHHHHHHHHHHhhCCCCC---chHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048578 409 CASADDGANVELAEIAMERLIKLEPFND---GNYVLMSNIYAAKAQWDDAGKMRRLMKER 465 (519)
Q Consensus 409 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 465 (519)
+.. .++.+.|..+|++++..-|.+. .+|...+..-.+.|+++.+.++.+++.+.
T Consensus 80 l~~---~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIK---LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHH---TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHH---hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888 9999999999999998765533 58999999999999999999999998764
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.17 Score=51.57 Aligned_cols=189 Identities=7% Similarity=0.015 Sum_probs=115.3
Q ss_pred cHHHHHHhc-----cCchHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCCCCCcc--hHHHHHH
Q 048578 32 HHLPLLQKC-----THLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIINPSTF--AFNTVIR 104 (519)
Q Consensus 32 ~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~ll~ 104 (519)
.|..+|.++ ++..++..+++.....+.. |..+...+-..|... ++.++|..+++++.+.++. ....+-.
T Consensus 43 ~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~---~~~d~~~~~Ye~~~~~~P~eell~~lFm 118 (932)
T KOG2053|consen 43 LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDL---GKLDEAVHLYERANQKYPSEELLYHLFM 118 (932)
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHH---hhhhHHHHHHHHHHhhCCcHHHHHHHHH
Confidence 344555554 4555556677766665544 788899999999999 9999999999999764444 3333445
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccc-------------hHHHHHHHHHhCCCCCchhHHHHHH
Q 048578 105 GYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQ-------------VKGVHSLVVKSKDFNSVIHSLTRLI 171 (519)
Q Consensus 105 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~l~ 171 (519)
+|.+.+++.+-.+.=-+|-+ .++-++..|=+++........ ++...+.+.+.++--.+..-.....
T Consensus 119 ayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl 197 (932)
T KOG2053|consen 119 AYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYL 197 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHH
Confidence 67777777544444333333 233344444444443322211 4444444444442111222222334
Q ss_pred HHHHhcCChHHHHHHHhc-CC----CCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 048578 172 TFYCNFGDVKSAQLLFDQ-MT----EKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSG 225 (519)
Q Consensus 172 ~~~~~~g~~~~A~~~~~~-~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 225 (519)
..+...|++++|+.++.. .. ..+...-+.-+..+...++|.+..++-.++...|
T Consensus 198 ~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 198 LILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 456678899999999832 22 2344444566777888899999999888888876
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00062 Score=46.41 Aligned_cols=60 Identities=23% Similarity=0.251 Sum_probs=38.7
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCC
Q 048578 373 LVDLLCRARLLDEAYEVIRNM-PMEPN-AVLWGSLLTACASADDGANVELAEIAMERLIKLEPFN 435 (519)
Q Consensus 373 l~~~~~~~~~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (519)
+...+...|++++|.+.|++. ...|+ ...+..+...+.. .|++++|...++++++..|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~---~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQ---QGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHCcCC
Confidence 445666777777777777776 44554 3355555566666 777777777777777777765
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.16 Score=50.72 Aligned_cols=327 Identities=12% Similarity=0.065 Sum_probs=186.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccc--hHHHHHHHHHhCCC-CCchhHHHHHHHHHHh
Q 048578 100 NTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQ--VKGVHSLVVKSKDF-NSVIHSLTRLITFYCN 176 (519)
Q Consensus 100 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 176 (519)
..+|.-+...+.+..|+++-..+...-.+- ...|......+.+..+ -+++.+.+.+.-.. -.....|..+......
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~ 519 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQ 519 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHh
Confidence 345667777788888888877775422112 3455555555444433 44444444333212 1344567778888888
Q ss_pred cCChHHHHHHHhcCCCC--------chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHH
Q 048578 177 FGDVKSAQLLFDQMTEK--------NVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASEL 248 (519)
Q Consensus 177 ~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 248 (519)
+|+.+.|..+++.=+.. +..-+...+.-+.+.|+.+....++-.+...- +...|...+ .+...
T Consensus 520 ~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l~~~l------~~~p~ 590 (829)
T KOG2280|consen 520 EGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSLFMTL------RNQPL 590 (829)
T ss_pred cCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHHHHHH------Hhchh
Confidence 99999999888754331 22234455566677777777777776665531 122222222 23334
Q ss_pred HHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHh-hc------CCCChhhHHHHHHHHHHcCC----------
Q 048578 249 GKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFK-IV------LEKNVCTWNSIIGGLAIHGC---------- 311 (519)
Q Consensus 249 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~-~~------~~~~~~~~~~l~~~~~~~g~---------- 311 (519)
|..+|.+..+..-.. .+-+.|-...+.. +...|. +- .++-..........+.+...
T Consensus 591 a~~lY~~~~r~~~~~------~l~d~y~q~dn~~-~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed 663 (829)
T KOG2280|consen 591 ALSLYRQFMRHQDRA------TLYDFYNQDDNHQ-ALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALED 663 (829)
T ss_pred hhHHHHHHHHhhchh------hhhhhhhcccchh-hhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHH
Confidence 455555544421110 1111122222222 211111 00 11111112222233333222
Q ss_pred hHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 048578 312 GEEAVKMFWQMQ-MSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVI 390 (519)
Q Consensus 312 ~~~a~~~~~~m~-~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 390 (519)
..+-+.+.+.+. +.|......+.+--+.-+...|+..+|.++-.+.+- ||...|-.-+.+++..++|++-.++-
T Consensus 664 ~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki-----pdKr~~wLk~~aLa~~~kweeLekfA 738 (829)
T KOG2280|consen 664 QMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI-----PDKRLWWLKLTALADIKKWEELEKFA 738 (829)
T ss_pred HHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCC-----cchhhHHHHHHHHHhhhhHHHHHHHH
Confidence 112222333332 123344444666667777788999999888776643 88888888899999999999988888
Q ss_pred HhCCCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 048578 391 RNMPMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLM 462 (519)
Q Consensus 391 ~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 462 (519)
+... ++..|.-++.+|.+ .|+.++|.+++-+.-. +.....+|.+.|++.+|.++--+-
T Consensus 739 kskk---sPIGy~PFVe~c~~---~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 739 KSKK---SPIGYLPFVEACLK---QGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred hccC---CCCCchhHHHHHHh---cccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHHHh
Confidence 8762 24456668889999 9999999988876322 226788999999999998865443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0027 Score=60.37 Aligned_cols=114 Identities=17% Similarity=0.071 Sum_probs=53.6
Q ss_pred CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcC--CCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC----CChhh
Q 048578 225 GVEVNELTLVSVLSACANLGASELGKWVHEFVNKNC--IILNDKLGAALTDMYAKCGYIEEALRVFKIVLE----KNVCT 298 (519)
Q Consensus 225 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~ 298 (519)
+.+.+...+..+++.+....+.+.+..++....... ...-+.+..++++.|.+.|..+.++.++..=.. +|..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 334455666666666666666666666666655542 112222333444444444444444444433222 34444
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048578 299 WNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVL 338 (519)
Q Consensus 299 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~ 338 (519)
++.++..+.+.|++..|.++...|...+...+..|+..-+
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l 180 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALAL 180 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHH
Confidence 4444444444444444444444444333333333333333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00012 Score=42.01 Aligned_cols=33 Identities=24% Similarity=0.494 Sum_probs=30.8
Q ss_pred HHHHHhhCCCCCchHHHHHHHHHhcCCchHHHH
Q 048578 425 MERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGK 457 (519)
Q Consensus 425 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 457 (519)
++++++++|+|+.+|..++.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678999999999999999999999999999863
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0069 Score=50.66 Aligned_cols=81 Identities=6% Similarity=-0.063 Sum_probs=47.2
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHH
Q 048578 195 VVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEV--NELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALT 272 (519)
Q Consensus 195 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 272 (519)
...|..+...+...|++++|+..|++.......+ ...++..+..++...|++++|...++...... +.....+..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3455666666677777777777777776542222 12356666666677777777777776666543 22333444444
Q ss_pred HHHH
Q 048578 273 DMYA 276 (519)
Q Consensus 273 ~~~~ 276 (519)
..+.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 4444
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0096 Score=59.06 Aligned_cols=136 Identities=15% Similarity=0.120 Sum_probs=97.8
Q ss_pred CCCCCHHHHHHHHHHHhcc-----CcHHHHHHHHHHcHHhcCCCCC-hhHHHHHHHHHHhc--------CChHHHHHHHH
Q 048578 326 GIKPDDVTLIAVLTACSHA-----GLIEKGKEIFYNMRRDYKVEPN-VKHYGCLVDLLCRA--------RLLDEAYEVIR 391 (519)
Q Consensus 326 g~~p~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------~~~~~A~~~~~ 391 (519)
+.+.+...|...+++.... ++.+.|..+|++..+ ..|+ ...|..+..++... .++..+.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 4466778888888875432 347789999999987 2454 44555544444332 12344455554
Q ss_pred hC-C---CCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 392 NM-P---MEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 392 ~~-~---~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
+. . ...+...+..+.-.+.. .|++++|...+++++.++| +..+|..++.++...|+.++|.+.+++....+.
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~---~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALV---KGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 43 1 23345667766666666 7899999999999999999 478999999999999999999999999877665
Q ss_pred c
Q 048578 468 V 468 (519)
Q Consensus 468 ~ 468 (519)
.
T Consensus 485 ~ 485 (517)
T PRK10153 485 G 485 (517)
T ss_pred C
Confidence 4
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.048 Score=44.59 Aligned_cols=124 Identities=12% Similarity=-0.017 Sum_probs=67.1
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC-----ChhhHHH
Q 048578 227 EVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEK-----NVCTWNS 301 (519)
Q Consensus 227 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~ 301 (519)
.|+...-..+..+....|+..+|...|++....-...|..+.-.+.++....++...|...++++.+- .+.....
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 34444444555566666666666666666665555556666666666666666666666666555331 2334444
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 048578 302 IIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKE 352 (519)
Q Consensus 302 l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~ 352 (519)
+...+...|.+.+|+..|+..... -|+...-......+.++|+.+++..
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHH
Confidence 555566666666666666665552 4444333223333445554444443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0025 Score=51.26 Aligned_cols=90 Identities=14% Similarity=0.002 Sum_probs=74.1
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhc
Q 048578 372 CLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAK 449 (519)
Q Consensus 372 ~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 449 (519)
....-+...|++++|..+|+-+ -..| +..-|..|...+.. .+++++|...|..+..++++||+.+...+.+|...
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~---~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l 118 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQL---KKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLM 118 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHh
Confidence 3445566889999999999887 3344 34445555555666 88999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHh
Q 048578 450 AQWDDAGKMRRLMKE 464 (519)
Q Consensus 450 g~~~~A~~~~~~m~~ 464 (519)
|+.+.|+..|+...+
T Consensus 119 ~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 119 RKAAKARQCFELVNE 133 (165)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999988876
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0011 Score=45.55 Aligned_cols=59 Identities=15% Similarity=0.179 Sum_probs=30.9
Q ss_pred ccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHH
Q 048578 343 HAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPNAVLWG 403 (519)
Q Consensus 343 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~~~~ 403 (519)
..|++++|+.+|+.+... .+-+...+..++.+|.+.|++++|.++++++ ...|+...|.
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 62 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ 62 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 345566666666665552 2334445555566666666666666666655 4445544333
|
... |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.019 Score=49.53 Aligned_cols=138 Identities=17% Similarity=0.076 Sum_probs=100.8
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcch-----hHHHH
Q 048578 196 VTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILND-----KLGAA 270 (519)
Q Consensus 196 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~ 270 (519)
...+.++.++.-.|.+.-....+.+.++...+.++.....+.+.-.+.||.+.|..+|+.+.+..-..+. .+...
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 3456777788888888888999999988876778888888999999999999999999988775433333 33334
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 048578 271 LTDMYAKCGYIEEALRVFKIVLEK---NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLI 335 (519)
Q Consensus 271 l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 335 (519)
....|.-.+++..|...|.+++.. ++..-|.-.-+....|+...|++.++.|... .|...+-+
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 445566777888888888877664 4445555555556678888888888888774 45544443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0084 Score=46.25 Aligned_cols=92 Identities=16% Similarity=0.175 Sum_probs=64.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCC-ChhHHHHHHHHH
Q 048578 301 SIIGGLAIHGCGEEAVKMFWQMQMSGIKPDD--VTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEP-NVKHYGCLVDLL 377 (519)
Q Consensus 301 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~ 377 (519)
....++-..|+.++|+.+|++....|..... ..+..+..++...|++++|..+|+.....+.-.+ +......+..++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 3455677788889999999988888766543 3677778888888999999999988877422111 222223345577
Q ss_pred HhcCChHHHHHHHHh
Q 048578 378 CRARLLDEAYEVIRN 392 (519)
Q Consensus 378 ~~~~~~~~A~~~~~~ 392 (519)
...|+.++|++.+-.
T Consensus 86 ~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 86 YNLGRPKEALEWLLE 100 (120)
T ss_pred HHCCCHHHHHHHHHH
Confidence 788888888877654
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0038 Score=52.50 Aligned_cols=97 Identities=14% Similarity=0.172 Sum_probs=75.9
Q ss_pred HHHHhcC--CCCchhHHHHHHHHHHHc-----CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC------------
Q 048578 184 QLLFDQM--TEKNVVTWTAMINGHVKQ-----KNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLG------------ 244 (519)
Q Consensus 184 ~~~~~~~--~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~------------ 244 (519)
...|+.. ...+-.+|..++..|.+. |..+=....+..|.+-|+.-|..+|+.||+.+=+..
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3445554 346777888888887654 677777888889999999999999999998876532
Q ss_pred ----ChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCC
Q 048578 245 ----ASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGY 280 (519)
Q Consensus 245 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 280 (519)
+.+.|.+++++|...|+.||..++..+++.+.+.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 556788999999999999999999998888866554
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.14 Score=47.49 Aligned_cols=84 Identities=10% Similarity=-0.029 Sum_probs=40.3
Q ss_pred HHcCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCC-hhHHHHHHHHHHhcCC
Q 048578 307 AIHGCGEEAVKMFWQMQMS---GIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPN-VKHYGCLVDLLCRARL 382 (519)
Q Consensus 307 ~~~g~~~~a~~~~~~m~~~---g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~ 382 (519)
.+.|++..|.+.|.+.+.. .+.|+...|.....+..+.|+..+|+.-.+...+ +.+. +..|..-..++...++
T Consensus 260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syikall~ra~c~l~le~ 336 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYIKALLRRANCHLALEK 336 (486)
T ss_pred hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666555432 2334444555555555556666666555555543 1111 1122222333444455
Q ss_pred hHHHHHHHHhC
Q 048578 383 LDEAYEVIRNM 393 (519)
Q Consensus 383 ~~~A~~~~~~~ 393 (519)
|++|.+-|++.
T Consensus 337 ~e~AV~d~~~a 347 (486)
T KOG0550|consen 337 WEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHH
Confidence 55555555544
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.021 Score=49.31 Aligned_cols=132 Identities=9% Similarity=0.022 Sum_probs=75.8
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--------CCCCCHHHHHHH
Q 048578 334 LIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM--------PMEPNAVLWGSL 405 (519)
Q Consensus 334 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--------~~~p~~~~~~~l 405 (519)
.+.++......|.+.-....+.++.+ ..-+.++.....|++.-.+.|+.+.|...|+.. +++-+.......
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~-~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIK-YYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHH-hCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34444455555555555555555555 233344455555556666666666666666533 222222222222
Q ss_pred HHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcc
Q 048578 406 LTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVK 469 (519)
Q Consensus 406 l~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 469 (519)
...+.- .+++..|...+.++...+|.++...+.-+-+..-.|+..+|.+.++.|.+....+
T Consensus 259 a~i~lg---~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 259 AFLHLG---QNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhheec---ccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 233444 5677777777777777777777777766666666777777777777776655443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.014 Score=45.05 Aligned_cols=104 Identities=21% Similarity=0.174 Sum_probs=61.1
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCC--cchhHHHHHHHHHH
Q 048578 201 MINGHVKQKNYREGIDLFRKMRDSGVEVN--ELTLVSVLSACANLGASELGKWVHEFVNKNCII--LNDKLGAALTDMYA 276 (519)
Q Consensus 201 li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~ 276 (519)
+..++-..|+.++|+.+|++....|...+ ...+..+...+...|++++|..+++........ .+......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44566677888888888888877775544 234555666677777777777777777654211 12223333344556
Q ss_pred hcCCHHHHHHHHhhcCCCChhhHHHHHH
Q 048578 277 KCGYIEEALRVFKIVLEKNVCTWNSIIG 304 (519)
Q Consensus 277 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~ 304 (519)
..|+.++|++.+-....++...|..-|.
T Consensus 87 ~~gr~~eAl~~~l~~la~~~~~y~ra~~ 114 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAETLPRYRRAIR 114 (120)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777766655444333333333333
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.25 Score=49.00 Aligned_cols=337 Identities=12% Similarity=0.036 Sum_probs=181.2
Q ss_pred CCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCCC-CCcch------------HHHHHHHHHhcCChhHHHHHHHHHHhC
Q 048578 59 DNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIIN-PSTFA------------FNTVIRGYAEAGLGHRGIQLYTQMIGN 125 (519)
Q Consensus 59 ~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~-~~~~~------------~~~ll~~~~~~g~~~~a~~~~~~m~~~ 125 (519)
.|.+..|..|....... -.++-|+..|-+... +.+.. -.+=+.+ --|.+++|.++|-+|-++
T Consensus 689 nPHprLWrllAe~Al~K---l~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drr 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFK---LALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRR 763 (1189)
T ss_pred CCchHHHHHHHHHHHHH---HhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchh
Confidence 56777787777665555 577788877766532 22111 1111222 247888999888887664
Q ss_pred CCCCCcchHHHHHHHHcCccchHHHHHHHHHhCCCCCc---hhHHHHHHHHHHhcCChHHHHHHHhcCCCCchhHHHHHH
Q 048578 126 GLDPDSFTYPILLKACGDLRQVKGVHSLVVKSKDFNSV---IHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMI 202 (519)
Q Consensus 126 g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li 202 (519)
+ ..+....+.|+.-.+++++..-++-..+ ...++.+...++....+++|.+.|..-.. . ...+
T Consensus 764 D---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--~---e~~~ 829 (1189)
T KOG2041|consen 764 D---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--T---ENQI 829 (1189)
T ss_pred h---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--h---HhHH
Confidence 3 3455566778888888877665422222 45678888888888888888888765432 1 1345
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHH
Q 048578 203 NGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIE 282 (519)
Q Consensus 203 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 282 (519)
.++.+..++++-+.+.+.+ +.+....-.+..++...|.-++|...+-+ .+.+ .+.+..|...+++.
T Consensus 830 ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr---~s~p------kaAv~tCv~LnQW~ 895 (1189)
T KOG2041|consen 830 ECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLR---RSLP------KAAVHTCVELNQWG 895 (1189)
T ss_pred HHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHh---ccCc------HHHHHHHHHHHHHH
Confidence 5666666666555554443 33444555566667777776666554422 2211 13345566667777
Q ss_pred HHHHHHhhcCCCChhhHH--------------HHHHHHHHcCChHHHHHHHHHHHH----CCCCCCHHHHHHHHHHHh--
Q 048578 283 EALRVFKIVLEKNVCTWN--------------SIIGGLAIHGCGEEAVKMFWQMQM----SGIKPDDVTLIAVLTACS-- 342 (519)
Q Consensus 283 ~a~~~~~~~~~~~~~~~~--------------~l~~~~~~~g~~~~a~~~~~~m~~----~g~~p~~~~~~~l~~~~~-- 342 (519)
+|.++-+...-|.+.+.- --|..+.+.|++-.|.+++.+|-+ ++.+|-..--..++.++.
T Consensus 896 ~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE 975 (1189)
T KOG2041|consen 896 EAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVE 975 (1189)
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHH
Confidence 777776665444332211 113344566666677777777643 333333321111111111
Q ss_pred -------------ccCcHHHHHHHHHHcHHh--cCCC------CChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCC
Q 048578 343 -------------HAGLIEKGKEIFYNMRRD--YKVE------PNVKHYGCLVDLLCRARLLDEAYEVIRNM----PMEP 397 (519)
Q Consensus 343 -------------~~g~~~~a~~~~~~~~~~--~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~p 397 (519)
..|..++|..+++...-. ..+. ....+|..|..-....|.++.|+..--.+ .+-|
T Consensus 976 ~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lp 1055 (1189)
T KOG2041|consen 976 NHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLP 1055 (1189)
T ss_pred HHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCC
Confidence 124444444433322110 0000 12334445555556678888887654433 4445
Q ss_pred CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhh
Q 048578 398 NAVLWGSLLTACASADDGANVELAEIAMERLIKL 431 (519)
Q Consensus 398 ~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~ 431 (519)
....|..+.-+.+. ...+-...+.|-++...
T Consensus 1056 P~eiySllALaaca---~raFGtCSKAfmkLe~~ 1086 (1189)
T KOG2041|consen 1056 PAEIYSLLALAACA---VRAFGTCSKAFMKLEAF 1086 (1189)
T ss_pred HHHHHHHHHHHHhh---hhhhhhhHHHHHHHHhh
Confidence 56666665555444 33444444444444433
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00093 Score=46.17 Aligned_cols=64 Identities=23% Similarity=0.255 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHccccCCC-CHHHHHHHHHHHHhhCC
Q 048578 367 VKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPN-AVLWGSLLTACASADDGA-NVELAEIAMERLIKLEP 433 (519)
Q Consensus 367 ~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~-~~~~a~~~~~~~~~~~p 433 (519)
...|..+...+...|++++|+..|++. .+.|+ ...|..+..++.. .| ++++|.+.++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~---~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMK---LGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH---TTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH---hCccHHHHHHHHHHHHHcCc
Confidence 456666677777777777777777666 44453 3355556566666 66 57777777777777765
|
... |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.04 Score=51.40 Aligned_cols=161 Identities=18% Similarity=0.064 Sum_probs=93.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCC-------ChhhHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048578 268 GAALTDMYAKCGYIEEALRVFKIVLEK-------NVCTWNSIIGGLAI---HGCGEEAVKMFWQMQMSGIKPDDVTLIAV 337 (519)
Q Consensus 268 ~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 337 (519)
.-.++-+|....+++..+++++.+... ....-....-++.+ .|+.++|++++..+....-.++..+|..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 334555577777777777777776543 11222233445556 78888888888886655557777788877
Q ss_pred HHHHhc---------cCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChH----HHHHHH---HhC-------C
Q 048578 338 LTACSH---------AGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLD----EAYEVI---RNM-------P 394 (519)
Q Consensus 338 ~~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~A~~~~---~~~-------~ 394 (519)
.+.|-. ....++|+..|.+.-+ +.|+..+=-.++..+...|.-. +..++- ... .
T Consensus 224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 224 GRIYKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 776532 2236667776665533 4454433223333333333211 111211 111 1
Q ss_pred CCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC
Q 048578 395 MEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPF 434 (519)
Q Consensus 395 ~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (519)
-..+-..+..++.++.- .|+.+.|.+.++++.+..|+
T Consensus 301 ~~~dYWd~ATl~Ea~vL---~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVL---AGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred ccccHHHHHHHHHHHHH---cCCHHHHHHHHHHHhhcCCc
Confidence 22455667777777777 78888888888888887655
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0046 Score=52.05 Aligned_cols=88 Identities=17% Similarity=0.164 Sum_probs=55.3
Q ss_pred CCCChhhHHHHHHHHHH-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----------------cHHHH
Q 048578 292 LEKNVCTWNSIIGGLAI-----HGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAG----------------LIEKG 350 (519)
Q Consensus 292 ~~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g----------------~~~~a 350 (519)
..++..+|..++..|.+ .|..+-....++.|.+-|+.-|..+|+.|++.+=+.. +-+-|
T Consensus 43 ~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~ 122 (228)
T PF06239_consen 43 QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECA 122 (228)
T ss_pred ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHH
Confidence 34566677777777664 4677778888888888899999999999888765421 23334
Q ss_pred HHHHHHcHHhcCCCCChhHHHHHHHHHHhc
Q 048578 351 KEIFYNMRRDYKVEPNVKHYGCLVDLLCRA 380 (519)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 380 (519)
+++++.|.. +|+-||.+++..+++.+++.
T Consensus 123 i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~ 151 (228)
T PF06239_consen 123 IDLLEQMEN-NGVMPDKETEQMLLNIFGRK 151 (228)
T ss_pred HHHHHHHHH-cCCCCcHHHHHHHHHHhccc
Confidence 444444444 34444444444444444433
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0031 Score=56.46 Aligned_cols=50 Identities=12% Similarity=0.060 Sum_probs=23.9
Q ss_pred CCCHHHHHHHHHHHHhhCCCC---CchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048578 415 GANVELAEIAMERLIKLEPFN---DGNYVLMSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
.|+++.|...|+.+++..|++ +.++..++.++...|++++|.++++++.+
T Consensus 193 ~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 193 KGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred cCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455555555555555444432 23333344445455555555555555444
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.053 Score=48.19 Aligned_cols=172 Identities=11% Similarity=0.036 Sum_probs=94.7
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCC--Ch-h---hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--
Q 048578 272 TDMYAKCGYIEEALRVFKIVLEK--NV-C---TWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSH-- 343 (519)
Q Consensus 272 ~~~~~~~g~~~~a~~~~~~~~~~--~~-~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~-- 343 (519)
...+...|++++|.+.|+.+... +. . ..-.++.++.+.+++++|...+++..+....-....+...+.+.+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~ 118 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMA 118 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhh
Confidence 34445567777777777666442 11 1 1233456667777777777777777664211111222222222221
Q ss_pred c---------------Cc---HHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHH
Q 048578 344 A---------------GL---IEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSL 405 (519)
Q Consensus 344 ~---------------g~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~l 405 (519)
. .| ...|...|+.+.+.+ |+. .-.++|...+..+....-... ..+
T Consensus 119 ~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~S-------------~ya~~A~~rl~~l~~~la~~e-~~i 181 (243)
T PRK10866 119 LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PNS-------------QYTTDATKRLVFLKDRLAKYE-LSV 181 (243)
T ss_pred cchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cCC-------------hhHHHHHHHHHHHHHHHHHHH-HHH
Confidence 1 11 234445555555531 322 112333332222210000111 123
Q ss_pred HHHHccccCCCCHHHHHHHHHHHHhhCCCC---CchHHHHHHHHHhcCCchHHHHHHHHHH
Q 048578 406 LTACASADDGANVELAEIAMERLIKLEPFN---DGNYVLMSNIYAAKAQWDDAGKMRRLMK 463 (519)
Q Consensus 406 l~~~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (519)
...|.+ .|.+..|..-++.+++.-|+. +.+...++.+|...|..++|..+...+.
T Consensus 182 a~~Y~~---~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 182 AEYYTK---RGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHH---cCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 445777 889999999999999988774 4566788889999999999998876654
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.36 Score=46.53 Aligned_cols=417 Identities=10% Similarity=0.070 Sum_probs=232.3
Q ss_pred CcccHHHHHHhccCc--hHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCCC--CCcchHHHHHH
Q 048578 29 KSHHHLPLLQKCTHL--VQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIIN--PSTFAFNTVIR 104 (519)
Q Consensus 29 ~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~ll~ 104 (519)
|..+|..+++-...- ...+...+++... ++..+..|..-+..-.+. ++++..+++|.+... -+...|...|+
T Consensus 19 di~sw~~lire~qt~~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~s---kdfe~VEkLF~RCLvkvLnlDLW~lYl~ 94 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQPIDKVRETYEQLVNV-FPSSPRAWKLYIERELAS---KDFESVEKLFSRCLVKVLNLDLWKLYLS 94 (656)
T ss_pred cHHHHHHHHHHHccCCHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 677899999876433 3336667776543 566777888888888777 999999999999843 56777888777
Q ss_pred HHHhc-CChhH----HHHHHHHHH-hCCCCCCcc-hHHHHHHHH---cCccc------hHHHHHHHHHhCCCCCc---hh
Q 048578 105 GYAEA-GLGHR----GIQLYTQMI-GNGLDPDSF-TYPILLKAC---GDLRQ------VKGVHSLVVKSKDFNSV---IH 165 (519)
Q Consensus 105 ~~~~~-g~~~~----a~~~~~~m~-~~g~~p~~~-~~~~ll~~~---~~~~~------~~~~~~~~~~~~~~~~~---~~ 165 (519)
.--+. |+... ..+.|+-.. +.|..+-.. .|+..+.-+ -..|. ...+.+...+.- ..|- ..
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral-~tPm~nlEk 173 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRAL-VTPMHNLEK 173 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHh-cCccccHHH
Confidence 55432 33322 233333333 335444332 344433322 22232 333333333332 2221 11
Q ss_pred HHHH------HHHH-------HHhcCChHHHHHHHhcCCC---------Cc------------hhHHHHHHHHHHHcC--
Q 048578 166 SLTR------LITF-------YCNFGDVKSAQLLFDQMTE---------KN------------VVTWTAMINGHVKQK-- 209 (519)
Q Consensus 166 ~~~~------l~~~-------~~~~g~~~~A~~~~~~~~~---------~~------------~~~~~~li~~~~~~~-- 209 (519)
.|+. -|+. --+...+..|.++++++.. |. ...|-.+|.-=-..+
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~ 253 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLR 253 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcc
Confidence 1211 1111 1122345556666655431 00 112333332111110
Q ss_pred ----C--hhHHHHHHHHHH-hCCCCCCHHH-HHHH----HHHHhccCCh-------HHHHHHHHHHHHcCCCcchhHHHH
Q 048578 210 ----N--YREGIDLFRKMR-DSGVEVNELT-LVSV----LSACANLGAS-------ELGKWVHEFVNKNCIILNDKLGAA 270 (519)
Q Consensus 210 ----~--~~~a~~~~~~m~-~~~~~~~~~~-~~~l----l~~~~~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~ 270 (519)
. .....-++++.. -.+..|+..- +... -+.+...|+. +++..+++.....-...+..+|..
T Consensus 254 t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~ 333 (656)
T KOG1914|consen 254 TLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFA 333 (656)
T ss_pred cccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 011122222221 1123332211 1111 1122333333 334444444443322333333333
Q ss_pred HHHHHHhc---CCHHHHHHHHhhcCC----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHh
Q 048578 271 LTDMYAKC---GYIEEALRVFKIVLE----KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKP-DDVTLIAVLTACS 342 (519)
Q Consensus 271 l~~~~~~~---g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~ 342 (519)
+.+.--.. ...+.....++++.. .-..+|-..+....+...+..|..+|.+..+.+..+ .....++++.-+|
T Consensus 334 ~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c 413 (656)
T KOG1914|consen 334 LADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC 413 (656)
T ss_pred HHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh
Confidence 32221111 124444455554432 234578888888889999999999999999998887 5557778887665
Q ss_pred ccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC---CCCCC--HHHHHHHHHHHccccCCCC
Q 048578 343 HAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM---PMEPN--AVLWGSLLTACASADDGAN 417 (519)
Q Consensus 343 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~p~--~~~~~~ll~~~~~~~~~~~ 417 (519)
+++.+-|.++|+.-.+.+|- ++.--...++-+...++-..|..+|++. ++.|+ ...|..+|..-.. .|+
T Consensus 414 -skD~~~AfrIFeLGLkkf~d--~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~---vGd 487 (656)
T KOG1914|consen 414 -SKDKETAFRIFELGLKKFGD--SPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESN---VGD 487 (656)
T ss_pred -cCChhHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHh---ccc
Confidence 57889999999998885544 4445567888889999999999999998 34554 4699999999888 999
Q ss_pred HHHHHHHHHHHHhhCCCC----CchHHHHHHHHHhcCCchHHH
Q 048578 418 VELAEIAMERLIKLEPFN----DGNYVLMSNIYAAKAQWDDAG 456 (519)
Q Consensus 418 ~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~ 456 (519)
...+.++-++....-|.+ ...-..+++-|.-.+.+..-.
T Consensus 488 L~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~ 530 (656)
T KOG1914|consen 488 LNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSL 530 (656)
T ss_pred HHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccH
Confidence 999999988887666521 123345556666555554333
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.074 Score=40.83 Aligned_cols=140 Identities=12% Similarity=0.070 Sum_probs=91.9
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHH
Q 048578 307 AIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEA 386 (519)
Q Consensus 307 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 386 (519)
.-.|.+++..++..+... ..+..-++.+|--....-+-+-..++++.+-+-+.+. .+|+....
T Consensus 13 ildG~V~qGveii~k~v~---Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVN---SSNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHH---HS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THHH
T ss_pred HHhchHHHHHHHHHHHcC---cCCccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHHH
Confidence 446888888888888876 3466677777776666667777777777776533332 24445555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048578 387 YEVIRNMPMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 387 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
...+-.++ .+.......+..... .|.-+.-.+++..+.+.+..+|.....++.+|.+.|+..++.+++++.-++|
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~---~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVK---QGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHH---TT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHhc--chHHHHHHHHHHHHH---hccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 55544443 234455666777888 8899999999999887666679999999999999999999999999999998
Q ss_pred Cc
Q 048578 467 IV 468 (519)
Q Consensus 467 ~~ 468 (519)
++
T Consensus 151 ~k 152 (161)
T PF09205_consen 151 LK 152 (161)
T ss_dssp -H
T ss_pred hH
Confidence 75
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.062 Score=52.52 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=15.2
Q ss_pred HHHHHcCChHHHHHHHHHHHHC
Q 048578 304 GGLAIHGCGEEAVKMFWQMQMS 325 (519)
Q Consensus 304 ~~~~~~g~~~~a~~~~~~m~~~ 325 (519)
.+|.+.|+-.+|.++++++...
T Consensus 825 kAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 825 KAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHHHHhcchHHHHHHHHHhhhh
Confidence 3556777777888887776543
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.66 Score=47.65 Aligned_cols=323 Identities=10% Similarity=-0.000 Sum_probs=149.1
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 048578 107 AEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLL 186 (519)
Q Consensus 107 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 186 (519)
.+.|++..+..+...+....+ ..-..|..+...+. .....++..++.+..+.+.....-...+..+.+.+++.....+
T Consensus 44 ~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l~-~~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~ 121 (644)
T PRK11619 44 WDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDLM-NQPAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAF 121 (644)
T ss_pred HHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhccc-cCCHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHh
Confidence 355666666666555532211 11112322222221 1235566666666654444555555566667778888888874
Q ss_pred HhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchh
Q 048578 187 FDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDK 266 (519)
Q Consensus 187 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 266 (519)
+..- ..+...-.....+....|+.++|......+-..| ...+.....++..+.+.|.+... .
T Consensus 122 ~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~lt~~----------------d 183 (644)
T PRK11619 122 SPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGKQDPL----------------A 183 (644)
T ss_pred cCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCCCCHH----------------H
Confidence 4332 2345555667777888888887877776665544 22344555555555544433221 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--H-HHHHHHHHhc
Q 048578 267 LGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDV--T-LIAVLTACSH 343 (519)
Q Consensus 267 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--~-~~~l~~~~~~ 343 (519)
++.- +......|+...|..+...+..........++..+. +...+...+.. +.|+.. . ....+.-+ .
T Consensus 184 ~w~R-~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~---~p~~~~~~~~~-----~~~~~~~~~~~~~~l~Rl-a 253 (644)
T PRK11619 184 YLER-IRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQN---DPNTVETFART-----TGPTDFTRQMAAVAFASV-A 253 (644)
T ss_pred HHHH-HHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHH---CHHHHHHHhhc-----cCCChhhHHHHHHHHHHH-H
Confidence 2211 233334455555555555442211111222222221 12222221111 112211 1 11111112 2
Q ss_pred cCcHHHHHHHHHHcHHhcCCCCCh--hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHccccCCCCHHH
Q 048578 344 AGLIEKGKEIFYNMRRDYKVEPNV--KHYGCLVDLLCRARLLDEAYEVIRNM-PMEPNAVLWGSLLTACASADDGANVEL 420 (519)
Q Consensus 344 ~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~~~~ 420 (519)
..+.+.|...+.......++.+.. ..+..++......+..++|...++.. ....+......-+..... .++.+.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~---~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALG---TGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHH---ccCHHH
Confidence 234456666666554433333222 22233333333332245555555554 111233333333333334 556666
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 048578 421 AEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLM 462 (519)
Q Consensus 421 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 462 (519)
+...+..+-......+.-..-+++++...|+.++|...|++.
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666554333334455556666666666666666666665
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.064 Score=52.41 Aligned_cols=90 Identities=14% Similarity=0.079 Sum_probs=47.3
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCCC-----------CchhHHHHHHHHHHHcCCh--hHHHHHHHHHHhCCCCCC
Q 048578 163 VIHSLTRLITFYCNFGDVKSAQLLFDQMTE-----------KNVVTWTAMINGHVKQKNY--REGIDLFRKMRDSGVEVN 229 (519)
Q Consensus 163 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~~~~--~~a~~~~~~m~~~~~~~~ 229 (519)
....+.+-+..|...|.+++|.++----.- -+...++..=.+|.+..+. -+...-+++++++|-.|+
T Consensus 555 ~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~ 634 (1081)
T KOG1538|consen 555 VEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPN 634 (1081)
T ss_pred ccccccccchhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCch
Confidence 334444555667788888888654211100 1222344444555554442 333444566666776666
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHH
Q 048578 230 ELTLVSVLSACANLGASELGKWVHEF 255 (519)
Q Consensus 230 ~~~~~~ll~~~~~~~~~~~a~~~~~~ 255 (519)
.... ...|+-.|.+.+|.++|.+
T Consensus 635 ~iLl---A~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 635 DLLL---ADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHH---HHHHHhhhhHHHHHHHHHH
Confidence 6432 3345556667777666544
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.044 Score=49.13 Aligned_cols=101 Identities=15% Similarity=0.062 Sum_probs=63.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHH
Q 048578 333 TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEP-NVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPN----AVLWGSLL 406 (519)
Q Consensus 333 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~----~~~~~~ll 406 (519)
.|...+..+.+.|++++|...|+.+.+.+.-.+ ....+..+..+|...|++++|...|+.+ ...|+ ...+..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 444444444556777777777777776421111 1245556777777778888887777776 22232 22344444
Q ss_pred HHHccccCCCCHHHHHHHHHHHHhhCCCCC
Q 048578 407 TACASADDGANVELAEIAMERLIKLEPFND 436 (519)
Q Consensus 407 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 436 (519)
..+.. .|+.+.|...++++++..|++.
T Consensus 225 ~~~~~---~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 225 VIMQD---KGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHH---cCCHHHHHHHHHHHHHHCcCCH
Confidence 45556 7888888888888888888754
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0035 Score=50.98 Aligned_cols=68 Identities=22% Similarity=0.320 Sum_probs=53.1
Q ss_pred HHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH-----hCCCccCC
Q 048578 401 LWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMK-----ERNIVKNP 471 (519)
Q Consensus 401 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~ 471 (519)
....++..+.. .|+++.|...+++++..+|.+..+|..++.+|...|+..+|.+.|+++. +.|+.|.+
T Consensus 64 ~~~~l~~~~~~---~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 64 ALERLAEALLE---AGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHH---TT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHh---ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 44556666777 8999999999999999999999999999999999999999999999885 55776643
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0067 Score=57.25 Aligned_cols=62 Identities=19% Similarity=0.034 Sum_probs=30.4
Q ss_pred HHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCch---HHHHHHHHHhcCCchHHHHHHHHHHh
Q 048578 400 VLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGN---YVLMSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 400 ~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
..++.+..+|.. .|++++|...++++++++|++..+ |..++.+|...|+.++|+..+++..+
T Consensus 76 ~a~~NLG~AL~~---lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 76 EDAVNLGLSLFS---KGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHH---cCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444444 455555555555555555544422 45555555555555555555555444
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.019 Score=44.83 Aligned_cols=53 Identities=17% Similarity=0.227 Sum_probs=40.6
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHH
Q 048578 326 GIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLC 378 (519)
Q Consensus 326 g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (519)
...|+..+..+++.+|+..|++..|.++++...+.++++-+...|..|++-..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 45677888888888888888888888888888887787777777777776443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0033 Score=38.68 Aligned_cols=41 Identities=20% Similarity=0.290 Sum_probs=35.1
Q ss_pred HHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 048578 401 LWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSN 444 (519)
Q Consensus 401 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 444 (519)
++..+..+|.. .|++++|++.++++++.+|+|+.++..++.
T Consensus 3 ~~~~la~~~~~---~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRR---LGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHH---cCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 56677788888 999999999999999999999888887764
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0065 Score=42.42 Aligned_cols=61 Identities=21% Similarity=0.294 Sum_probs=36.2
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCch
Q 048578 375 DLLCRARLLDEAYEVIRNM-PMEPNA-VLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGN 438 (519)
Q Consensus 375 ~~~~~~~~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 438 (519)
..|.+.+++++|.++++.+ ...|+. ..+......+.. .|++++|.+.++++++..|+++..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~---~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQ---LGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHH---hccHHHHHHHHHHHHHHCCCcHHH
Confidence 4556666666666666666 444433 344444445556 666777777777777666654433
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.068 Score=47.58 Aligned_cols=103 Identities=17% Similarity=0.124 Sum_probs=77.2
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHhC-CCCCCHH-HH
Q 048578 328 KPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRAR---LLDEAYEVIRNM-PMEPNAV-LW 402 (519)
Q Consensus 328 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~-~~~p~~~-~~ 402 (519)
+-|...|..|..+|...|+.+.|..-|.+..+ -.++++..+..+..++.... ...++.++|+++ ..+|+.. +.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 44667899999999999999999999998887 34456666667776665432 456788888888 6677555 44
Q ss_pred HHHHHHHccccCCCCHHHHHHHHHHHHhhCCCC
Q 048578 403 GSLLTACASADDGANVELAEIAMERLIKLEPFN 435 (519)
Q Consensus 403 ~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (519)
..|...+.. .|++.+|...++.+++..|.+
T Consensus 231 ~lLA~~afe---~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 231 SLLAFAAFE---QGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHHH---cccHHHHHHHHHHHHhcCCCC
Confidence 444455777 889999999999999988764
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.63 Score=43.99 Aligned_cols=367 Identities=11% Similarity=0.042 Sum_probs=188.7
Q ss_pred CChHHHHHHHhcCCC------------------CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCC----CCcchHHH
Q 048578 79 SQIAYAHLVFNQIIN------------------PSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLD----PDSFTYPI 136 (519)
Q Consensus 79 ~~~~~A~~~~~~~~~------------------~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~----p~~~~~~~ 136 (519)
+.+..|.+.+..-.. +|-.-=+..+.++.+.|++.++..++++|...=++ -+..+|+.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 788888877754421 11122245667888999999999999988875333 57777777
Q ss_pred HHHHHcCccchHHHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCchhHHHHHHHHHHHc--CChhHH
Q 048578 137 LLKACGDLRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQ--KNYREG 214 (519)
Q Consensus 137 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~--~~~~~a 214 (519)
++-.++++= +-.+.+....+.-+. |--++-.|.+.=+.-++.. +++. -|.......++....-. .+..--
T Consensus 173 ~vlmlsrSY-----fLEl~e~~s~dl~pd-yYemilfY~kki~~~d~~~-Y~k~-~peeeL~s~imqhlfi~p~e~l~~~ 244 (549)
T PF07079_consen 173 AVLMLSRSY-----FLELKESMSSDLYPD-YYEMILFYLKKIHAFDQRP-YEKF-IPEEELFSTIMQHLFIVPKERLPPL 244 (549)
T ss_pred HHHHHhHHH-----HHHHHHhcccccChH-HHHHHHHHHHHHHHHhhch-HHhh-CcHHHHHHHHHHHHHhCCHhhccHH
Confidence 555554331 111111110111111 2222333322111101000 0000 02222222333322211 122233
Q ss_pred HHHHHHHHhCCCCCCHHH-HHHHHHHHhccCChHHHHHHHHHHHHcCCC----cchhHHHHHHHHHHhcCCHHHHHHHHh
Q 048578 215 IDLFRKMRDSGVEVNELT-LVSVLSACANLGASELGKWVHEFVNKNCII----LNDKLGAALTDMYAKCGYIEEALRVFK 289 (519)
Q Consensus 215 ~~~~~~m~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~ 289 (519)
.++++.....-+.|+... ...+...+.+ +.+++..+.+.+....+. .-..++..++....+.++...|.+.+.
T Consensus 245 mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~ 322 (549)
T PF07079_consen 245 MQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLA 322 (549)
T ss_pred HHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 344444444445555432 2233333333 555555555555443221 123466777777788888888777765
Q ss_pred hcC--CCChhh-------HHHHHHHHH----HcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHH---HHhccCc-HHHHH
Q 048578 290 IVL--EKNVCT-------WNSIIGGLA----IHGCGEEAVKMFWQMQMSGIKPDDV-TLIAVLT---ACSHAGL-IEKGK 351 (519)
Q Consensus 290 ~~~--~~~~~~-------~~~l~~~~~----~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~---~~~~~g~-~~~a~ 351 (519)
-+. +|+... -..+-+..+ ..-+...-+.+|+.....++ |.. ....|+. -+-+.|. -++|.
T Consensus 323 lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekal 400 (549)
T PF07079_consen 323 LLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKAL 400 (549)
T ss_pred HHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHH
Confidence 442 332221 111112222 11122334455555554432 222 2222332 3455555 78889
Q ss_pred HHHHHcHHhcCCCCChhHHHHHH----HHHHhc---CChHHH---HHHHHhCCCCC----CHHHHHHHHHH--HccccCC
Q 048578 352 EIFYNMRRDYKVEPNVKHYGCLV----DLLCRA---RLLDEA---YEVIRNMPMEP----NAVLWGSLLTA--CASADDG 415 (519)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~---~~~~~A---~~~~~~~~~~p----~~~~~~~ll~~--~~~~~~~ 415 (519)
.+++.+.+- -+-|..+-|.+. ..|... ..+.+- ....++.|+.| +...-|.|..+ +.. +
T Consensus 401 nLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLys---q 475 (549)
T PF07079_consen 401 NLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYS---Q 475 (549)
T ss_pred HHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHh---c
Confidence 998888772 223333333222 222221 122222 22334447666 34466677766 455 8
Q ss_pred CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 048578 416 ANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMK 463 (519)
Q Consensus 416 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (519)
|++.++.-.-.-+.+..| ++.+|..++.++....++++|+.++..+.
T Consensus 476 gey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 476 GEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred ccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 999999999989999999 69999999999999999999999998753
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.85 Score=45.47 Aligned_cols=285 Identities=11% Similarity=0.081 Sum_probs=133.3
Q ss_pred CChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----cchHHHHHHHHcCccchHHHHHHH
Q 048578 79 SQIAYAHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPD----SFTYPILLKACGDLRQVKGVHSLV 154 (519)
Q Consensus 79 ~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~~~~~~ 154 (519)
|++++|++++-++..+|. .|..+.+.|++-.+.++++.- |-..| ...|+.+-..+......+++.+..
T Consensus 748 g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY 819 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYY 819 (1189)
T ss_pred cchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999988877665 366677777777766665421 11111 123444444444444444444444
Q ss_pred HHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 048578 155 VKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLV 234 (519)
Q Consensus 155 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 234 (519)
...+ -....+.++.+..++++-+.+-+.+++. ....-.+..++...|.-++|.+.|-+-- .| .
T Consensus 820 ~~~~-------~~e~~~ecly~le~f~~LE~la~~Lpe~-s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----k 882 (1189)
T KOG2041|consen 820 SYCG-------DTENQIECLYRLELFGELEVLARTLPED-SELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----K 882 (1189)
T ss_pred Hhcc-------chHhHHHHHHHHHhhhhHHHHHHhcCcc-cchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----H
Confidence 4433 1123444555555555555555544432 2223344555555555555555443221 11 1
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCC-----------CcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh-------
Q 048578 235 SVLSACANLGASELGKWVHEFVNKNCI-----------ILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNV------- 296 (519)
Q Consensus 235 ~ll~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------- 296 (519)
..+..|...++|.+|.++-+...-..+ -.+..+. --|..+.+.|+.-+|-+++.+|.++..
T Consensus 883 aAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~-eaIe~~Rka~~~~daarll~qmae~e~~K~~p~l 961 (1189)
T KOG2041|consen 883 AAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHM-EAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYL 961 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchH-HHHHHhhhcccchhHHHHHHHHhHHHhhccCCHH
Confidence 223344444445444443322110000 0000000 123445555666566666666633211
Q ss_pred -----hhHHHH-HHHH----------HHcCChHHHHHHHHHHHHC-------CCCCCHH--HHHHHHHHHhccCcHHHHH
Q 048578 297 -----CTWNSI-IGGL----------AIHGCGEEAVKMFWQMQMS-------GIKPDDV--TLIAVLTACSHAGLIEKGK 351 (519)
Q Consensus 297 -----~~~~~l-~~~~----------~~~g~~~~a~~~~~~m~~~-------g~~p~~~--~~~~l~~~~~~~g~~~~a~ 351 (519)
....++ +.-+ -+.|..++|..+++...-. +.--... .|..|.+--...|..+.|.
T Consensus 962 r~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al 1041 (1189)
T KOG2041|consen 962 RLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDAL 1041 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHH
Confidence 111111 1111 1345566666554443211 0011122 3344444455567777777
Q ss_pred HHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 048578 352 EIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEV 389 (519)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 389 (519)
+.--.+..-..+-|....|..+.-+-+..+.+.-.-+.
T Consensus 1042 ~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKA 1079 (1189)
T KOG2041|consen 1042 QTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKA 1079 (1189)
T ss_pred HHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHH
Confidence 65544443224557778888777666655544443333
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.054 Score=43.94 Aligned_cols=71 Identities=17% Similarity=0.240 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHH----hcCCCCChhH
Q 048578 298 TWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRR----DYKVEPNVKH 369 (519)
Q Consensus 298 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~ 369 (519)
+...++..+...|++++|..+++.+.... +-+...+..+|.++...|+...|.++|+.+.+ +.|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34445556666777777777777776643 44555777777777777777777777766543 3466666554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.18 Score=43.59 Aligned_cols=49 Identities=12% Similarity=0.049 Sum_probs=36.9
Q ss_pred HHHHHccccCCCCHHHHHHHHHHHHhhCCCCC---chHHHHHHHHHhcCCchHHH
Q 048578 405 LLTACASADDGANVELAEIAMERLIKLEPFND---GNYVLMSNIYAAKAQWDDAG 456 (519)
Q Consensus 405 ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~ 456 (519)
+...|.+ .|.+..|..-++.+++.-|+++ .+...++.+|.+.|..+.|.
T Consensus 147 ia~~Y~~---~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYYK---RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHC---TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHH---cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 3455778 8999999999999999988843 45678888899999877444
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.024 Score=52.22 Aligned_cols=128 Identities=11% Similarity=-0.036 Sum_probs=85.8
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHH----cCC-CcchhHHHHHHHHHHhcCCHHHHHHHHhhc-------CCCC--hh
Q 048578 232 TLVSVLSACANLGASELGKWVHEFVNK----NCI-ILNDKLGAALTDMYAKCGYIEEALRVFKIV-------LEKN--VC 297 (519)
Q Consensus 232 ~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-------~~~~--~~ 297 (519)
.|..+.+.|.-.|+++.|....+.-+. -|. ......+..+.++++-.|+++.|.+.|+.. ..+. ..
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 466666666777899988776554322 221 223456677888889999999998888754 2222 33
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHH
Q 048578 298 TWNSIIGGLAIHGCGEEAVKMFWQMQM----SG-IKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRR 359 (519)
Q Consensus 298 ~~~~l~~~~~~~g~~~~a~~~~~~m~~----~g-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 359 (519)
....|...|.-..++++|+.++.+-.. .+ ..-....+.+|..++...|..++|+.+.+...+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 455677777777788888887766321 11 223445788888899999999888887765544
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.55 Score=40.57 Aligned_cols=83 Identities=14% Similarity=0.108 Sum_probs=42.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCC-hhHHHHHHHHHH
Q 048578 300 NSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPN-VKHYGCLVDLLC 378 (519)
Q Consensus 300 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 378 (519)
..++.-|-...-..+|...+..+.+. . ..--..+..-|.+.|.+..|..-++.+.+++.-.+. ......++.+|.
T Consensus 114 ~~li~~yP~S~y~~~A~~~l~~l~~~---l-a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~ 189 (203)
T PF13525_consen 114 EELIKRYPNSEYAEEAKKRLAELRNR---L-AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYY 189 (203)
T ss_dssp HHHHHH-TTSTTHHHHHHHHHHHHHH---H-HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCchHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHH
Confidence 33444444444445555444444321 0 011123455677778888888888877775322221 234456677777
Q ss_pred hcCChHHH
Q 048578 379 RARLLDEA 386 (519)
Q Consensus 379 ~~~~~~~A 386 (519)
+.|..+.|
T Consensus 190 ~l~~~~~a 197 (203)
T PF13525_consen 190 KLGLKQAA 197 (203)
T ss_dssp HTT-HHHH
T ss_pred HhCChHHH
Confidence 77776644
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.055 Score=50.08 Aligned_cols=95 Identities=18% Similarity=0.157 Sum_probs=78.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 048578 368 KHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNI 445 (519)
Q Consensus 368 ~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 445 (519)
.++..+.-+|.+.+++.+|++...+. ...| |....-.=..++.. .|+++.|+..|+++.+++|.|..+-..|+.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~---~~e~~~A~~df~ka~k~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLA---LGEYDLARDDFQKALKLEPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHh---hccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 46778888999999999999988887 4454 55566666778888 9999999999999999999999998899888
Q ss_pred HHhcCCchHH-HHHHHHHHhC
Q 048578 446 YAAKAQWDDA-GKMRRLMKER 465 (519)
Q Consensus 446 ~~~~g~~~~A-~~~~~~m~~~ 465 (519)
-.+..++++. .++|..|-..
T Consensus 335 ~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 8877766655 6788888543
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.0074 Score=42.81 Aligned_cols=61 Identities=8% Similarity=0.052 Sum_probs=42.6
Q ss_pred HHHHHHHHHccccCCCCHHHHHHHHHHHHhh----CCC---CCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048578 401 LWGSLLTACASADDGANVELAEIAMERLIKL----EPF---NDGNYVLMSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 401 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
+++.+...|.. .|++++|...++++++. +++ -..++..++.+|...|++++|++++++..+
T Consensus 7 ~~~~la~~~~~---~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRE---LGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55666666777 77777777777777643 222 245677888888888888888888887643
|
... |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.0095 Score=42.23 Aligned_cols=59 Identities=12% Similarity=0.104 Sum_probs=26.3
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHcHHh---cCC-CCC-hhHHHHHHHHHHhcCChHHHHHHHH
Q 048578 333 TLIAVLTACSHAGLIEKGKEIFYNMRRD---YKV-EPN-VKHYGCLVDLLCRARLLDEAYEVIR 391 (519)
Q Consensus 333 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~-~~~-~~~~~~l~~~~~~~~~~~~A~~~~~ 391 (519)
+++.+...|...|++++|+..|++..+. .|- .|+ ..++..+..+|...|++++|++.++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~ 70 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQ 70 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4555555555555555555555554431 010 011 2334444444444444444444444
|
... |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.068 Score=41.72 Aligned_cols=48 Identities=15% Similarity=0.200 Sum_probs=31.8
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHH
Q 048578 362 KVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM----PMEPNAVLWGSLLTAC 409 (519)
Q Consensus 362 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~p~~~~~~~ll~~~ 409 (519)
...|+..+..+++.+|+..|++..|+++++.. +++.+..+|..|+.-+
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 44566677777777777777777777766655 5555566677666653
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.11 E-value=1.8 Score=43.68 Aligned_cols=108 Identities=15% Similarity=0.057 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 048578 267 LGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGL 346 (519)
Q Consensus 267 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 346 (519)
+.+--+.-+...|+..+|.++-.+..-||-..|-.-+.+++..+++++-+++-+.++ ...-|..+..+|.+.|+
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n 759 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGN 759 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhccc
Confidence 334444555566777777777766666666666666667777777666655544433 12345556666777777
Q ss_pred HHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 048578 347 IEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVI 390 (519)
Q Consensus 347 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 390 (519)
.++|.+++-+... .+ -...+|.+.|++.+|.++-
T Consensus 760 ~~EA~KYiprv~~---l~-------ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 760 KDEAKKYIPRVGG---LQ-------EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHHHhhhhhccCC---hH-------HHHHHHHHhccHHHHHHHH
Confidence 7777766655422 11 3455666666666665544
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.36 Score=47.62 Aligned_cols=113 Identities=17% Similarity=0.109 Sum_probs=57.8
Q ss_pred CcHHHHHHHHHHcHHhcCCCCChhHHH-HHHHHHHhcCChHHHHHHHHhC-CCC-----CCHHHHHHHHHHHccccCCCC
Q 048578 345 GLIEKGKEIFYNMRRDYKVEPNVKHYG-CLVDLLCRARLLDEAYEVIRNM-PME-----PNAVLWGSLLTACASADDGAN 417 (519)
Q Consensus 345 g~~~~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~~-~~~-----p~~~~~~~ll~~~~~~~~~~~ 417 (519)
.+.+.|.++++.+.+. -|+...|. .-.+.+...|++++|++.|++. ..+ .....+--+.-.+.. ..+
T Consensus 247 ~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~---~~~ 320 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF---QHD 320 (468)
T ss_pred CCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH---Hch
Confidence 3455566666666552 24433333 2234455566666666666654 101 111222223333444 556
Q ss_pred HHHHHHHHHHHHhhCCCCCchHHHHHH-HHHhcCCc-------hHHHHHHHHHH
Q 048578 418 VELAEIAMERLIKLEPFNDGNYVLMSN-IYAAKAQW-------DDAGKMRRLMK 463 (519)
Q Consensus 418 ~~~a~~~~~~~~~~~p~~~~~~~~l~~-~~~~~g~~-------~~A~~~~~~m~ 463 (519)
+++|...+.++.+.+..+...|..+.- ++...|+. ++|.++|+++.
T Consensus 321 w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 321 WEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 777777777766666655444443333 34455666 66666666654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.16 Score=48.29 Aligned_cols=144 Identities=12% Similarity=0.048 Sum_probs=78.8
Q ss_pred ChHHHHHHHHHHHH-CCCCCCHH-HHHHHHHHHhcc---------CcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHh
Q 048578 311 CGEEAVKMFWQMQM-SGIKPDDV-TLIAVLTACSHA---------GLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCR 379 (519)
Q Consensus 311 ~~~~a~~~~~~m~~-~g~~p~~~-~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (519)
..+.|+.+|.+... ..+.|+-. .|..+..++... .+..+|.+.-++..+ --+-|......+..++.-
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD--ITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHh
Confidence 34567777777762 22455543 555555544322 223445555555554 223455555566666666
Q ss_pred cCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCc--hHHHHHHHHHhcCCchHH
Q 048578 380 ARLLDEAYEVIRNM-PMEPNAV-LWGSLLTACASADDGANVELAEIAMERLIKLEPFNDG--NYVLMSNIYAAKAQWDDA 455 (519)
Q Consensus 380 ~~~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~--~~~~l~~~~~~~g~~~~A 455 (519)
.++++.|..+|++. .+.||.. +|......+.. .|+.++|.+.++++++++|.-.. .....++.|+.. .+++|
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~---~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~ 426 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFH---NEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNN 426 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHH---cCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhh
Confidence 66777777777776 5566543 33333333444 66777777777777777776332 222333345544 35666
Q ss_pred HHHHH
Q 048578 456 GKMRR 460 (519)
Q Consensus 456 ~~~~~ 460 (519)
.+++-
T Consensus 427 ~~~~~ 431 (458)
T PRK11906 427 IKLYY 431 (458)
T ss_pred HHHHh
Confidence 66653
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.85 E-value=1.2 Score=41.99 Aligned_cols=168 Identities=14% Similarity=0.074 Sum_probs=89.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCC-c------hhHHHHHHHHHHH---cCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 048578 166 SLTRLITFYCNFGDVKSAQLLFDQMTEK-N------VVTWTAMINGHVK---QKNYREGIDLFRKMRDSGVEVNELTLVS 235 (519)
Q Consensus 166 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~------~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 235 (519)
+...++-.|-...+++...++++.+... + ...--....++-+ .|+.++|++++..+....-.+++.+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 3334555577888888888888888762 1 1111233445556 7888888888888665556777788877
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHH--HHHHHHHcCC-h
Q 048578 236 VLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNS--IIGGLAIHGC-G 312 (519)
Q Consensus 236 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--l~~~~~~~g~-~ 312 (519)
+.+.|-.. ..+.+.. + ...+++|++.|.+.-+-+...|+. ++..+...|. +
T Consensus 223 ~GRIyKD~------------~~~s~~~-d-------------~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~ 276 (374)
T PF13281_consen 223 LGRIYKDL------------FLESNFT-D-------------RESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDF 276 (374)
T ss_pred HHHHHHHH------------HHHcCcc-c-------------hHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcc
Confidence 77665321 1111100 1 112555666665553322222211 1111112221 1
Q ss_pred H---HHHHHH---HH-HHHCC---CCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHH
Q 048578 313 E---EAVKMF---WQ-MQMSG---IKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRR 359 (519)
Q Consensus 313 ~---~a~~~~---~~-m~~~g---~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 359 (519)
+ +..++- .. +.+.| -..+-..+..++.++.-.|+.++|.+..+.+.+
T Consensus 277 ~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 277 ETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred cchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 1 122222 11 11223 233444667777778888888888888888876
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.72 Score=41.16 Aligned_cols=121 Identities=10% Similarity=0.069 Sum_probs=70.5
Q ss_pred HHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHH---HHHHHccccCCC
Q 048578 340 ACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGS---LLTACASADDGA 416 (519)
Q Consensus 340 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~---ll~~~~~~~~~~ 416 (519)
.....|++.+|...|+..... .+-+...-..++++|...|+.+.|..++..++..-...-+.. -|..+.+....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 455667777777777776662 233344555677777777777777777777733322222222 122233311133
Q ss_pred CHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048578 417 NVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 417 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
+..... +-...+|+|...-..++..|...|+.++|.+.+=.+.+++
T Consensus 221 ~~~~l~----~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 221 EIQDLQ----RRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred CHHHHH----HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 333332 3334577777777778888888888888777666655443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.8 Score=37.22 Aligned_cols=84 Identities=11% Similarity=0.020 Sum_probs=54.2
Q ss_pred HhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhc---CCCChhhHHHHHHHHHHcCChHHHH
Q 048578 240 CANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIV---LEKNVCTWNSIIGGLAIHGCGEEAV 316 (519)
Q Consensus 240 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~ 316 (519)
+...|++++|..+|..+.-.+ +-+...+..|..++-..+++++|+..|... ...|+..+-....++...|+.+.|.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHH
Confidence 446677777777777766654 334555566666666777777777776544 2345555666667777777777777
Q ss_pred HHHHHHHH
Q 048578 317 KMFWQMQM 324 (519)
Q Consensus 317 ~~~~~m~~ 324 (519)
..|+..++
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 77766665
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.77 E-value=1.4 Score=39.47 Aligned_cols=173 Identities=13% Similarity=0.041 Sum_probs=109.2
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcC
Q 048578 283 EALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYK 362 (519)
Q Consensus 283 ~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 362 (519)
...+++++...+....-..-.......|++.+|...|+...... .-+...-..++.+|...|+.+.|..++..+..+ -
T Consensus 121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~ 198 (304)
T COG3118 121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-A 198 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-c
Confidence 44445555544422222223345567888888888888877643 223456677888889999999999998887652 1
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhC--CCCCchH
Q 048578 363 VEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLE--PFNDGNY 439 (519)
Q Consensus 363 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~ 439 (519)
-.........-+..+.+.....+...+-.+..-.| |...-..+...+.. .|+.+.|.+.+=.+++.+ -.|...-
T Consensus 199 ~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~---~g~~e~Ale~Ll~~l~~d~~~~d~~~R 275 (304)
T COG3118 199 QDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHL---VGRNEAALEHLLALLRRDRGFEDGEAR 275 (304)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhcccccCcHHH
Confidence 11111222234555666666655555555554466 44455556666777 888999888887777765 4477888
Q ss_pred HHHHHHHHhcCCchHHHHHHH
Q 048578 440 VLMSNIYAAKAQWDDAGKMRR 460 (519)
Q Consensus 440 ~~l~~~~~~~g~~~~A~~~~~ 460 (519)
..++..+.-.|.-+.+...++
T Consensus 276 k~lle~f~~~g~~Dp~~~~~R 296 (304)
T COG3118 276 KTLLELFEAFGPADPLVLAYR 296 (304)
T ss_pred HHHHHHHHhcCCCCHHHHHHH
Confidence 888888888886555444443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.079 Score=50.29 Aligned_cols=62 Identities=11% Similarity=0.010 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH----HHHHHHHHHccccCCCCHHHHHHHHHHHHhh
Q 048578 367 VKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPNAV----LWGSLLTACASADDGANVELAEIAMERLIKL 431 (519)
Q Consensus 367 ~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~----~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~ 431 (519)
...++.+..+|...|++++|+..|++. .+.|+.. +|..+..+|.. .|+.++|...++++++.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~---LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAY---REEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHh
Confidence 445555555555555555555555554 4455432 35555555555 55556666555555554
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.33 Score=38.40 Aligned_cols=56 Identities=21% Similarity=0.218 Sum_probs=27.8
Q ss_pred HHhcCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCC
Q 048578 377 LCRARLLDEAYEVIRNM----PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFN 435 (519)
Q Consensus 377 ~~~~~~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (519)
..+.|++++|.+.|+.+ +..| ....-..++.++.. .++++.|...+++.++++|.+
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~---~~~y~~A~a~~~rFirLhP~h 80 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK---QGDYEEAIAAYDRFIRLHPTH 80 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHhCCCC
Confidence 33455555555555554 1111 22333444555555 555666666666666655553
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.11 Score=48.29 Aligned_cols=66 Identities=12% Similarity=-0.012 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 399 AVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 399 ~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
..++..+.-++.+ .+.+..|++...+++..+|+|..+...-+.+|...|+++.|+..|+++++...
T Consensus 257 ~~~~lNlA~c~lK---l~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P 322 (397)
T KOG0543|consen 257 LACHLNLAACYLK---LKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEP 322 (397)
T ss_pred HHHhhHHHHHHHh---hhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCC
Confidence 3456667777888 99999999999999999999999999999999999999999999999988544
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.33 Score=43.80 Aligned_cols=48 Identities=15% Similarity=-0.033 Sum_probs=20.2
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcH
Q 048578 310 GCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMR 358 (519)
Q Consensus 310 g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 358 (519)
|++.+|...++++.+. .+-|...+...=.+|...|+.+.-...++++.
T Consensus 117 g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIi 164 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKII 164 (491)
T ss_pred ccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhc
Confidence 4444444444444432 22233334444444444444444444444443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.098 Score=40.07 Aligned_cols=89 Identities=18% Similarity=0.101 Sum_probs=46.2
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhC-CCC---CchHHHHHHHHHhc
Q 048578 376 LLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLE-PFN---DGNYVLMSNIYAAK 449 (519)
Q Consensus 376 ~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~-p~~---~~~~~~l~~~~~~~ 449 (519)
++...|+.+.|++.|.+. .+-| ....||.-.+++.- .|+.++|..-+++++++. |.. ..+|..-+..|...
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RL---q~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRL---QGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHH---cCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 344555555555555554 2222 34455555555555 555556655555555543 221 12344455555556
Q ss_pred CCchHHHHHHHHHHhCCC
Q 048578 450 AQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 450 g~~~~A~~~~~~m~~~~~ 467 (519)
|+-+.|..=|+..-+.|.
T Consensus 129 g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGS 146 (175)
T ss_pred CchHHHHHhHHHHHHhCC
Confidence 666666665555555544
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.48 E-value=1.6 Score=38.15 Aligned_cols=197 Identities=19% Similarity=0.089 Sum_probs=122.7
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHc-CCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC--Ch-hhHHHHHH-H
Q 048578 231 LTLVSVLSACANLGASELGKWVHEFVNKN-CIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEK--NV-CTWNSIIG-G 305 (519)
Q Consensus 231 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~-~~~~~l~~-~ 305 (519)
..+......+...+.+..+...+...... ........+......+...+.+..+...+...... +. ........ .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 44444445555555555555555554432 22344445555555566666666666666665442 11 22222233 6
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCC-ChhHHHHHHHHHHhc
Q 048578 306 LAIHGCGEEAVKMFWQMQMSGIKP----DDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEP-NVKHYGCLVDLLCRA 380 (519)
Q Consensus 306 ~~~~g~~~~a~~~~~~m~~~g~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 380 (519)
+...|+++.|...+.+... ..| ....+......+...++.+.+...+..... ..+. ....+..+...+...
T Consensus 140 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 140 LYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHHHc
Confidence 7788888888888888755 233 233444445556777888888888888877 2333 466777788888888
Q ss_pred CChHHHHHHHHhC-CCCCC-HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC
Q 048578 381 RLLDEAYEVIRNM-PMEPN-AVLWGSLLTACASADDGANVELAEIAMERLIKLEPF 434 (519)
Q Consensus 381 ~~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (519)
++++.|...+... ...|+ ...+..+...+.. .+..+.+...+.+..+..|.
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLE---LGRYEEALEALEKALELDPD 268 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHH---cCCHHHHHHHHHHHHHhCcc
Confidence 8888888888877 44554 3334444444435 67888888888888888876
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.65 Score=45.22 Aligned_cols=158 Identities=13% Similarity=0.070 Sum_probs=88.1
Q ss_pred HHHHcCChhHHHHHHH--HHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCH
Q 048578 204 GHVKQKNYREGIDLFR--KMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYI 281 (519)
Q Consensus 204 ~~~~~~~~~~a~~~~~--~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 281 (519)
...-.++++++.+..+ ++.. .+ +....+.++..+.+.|..+.|..+...-. .-.....+.|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCH
Confidence 3445566666655554 1111 11 23345566666666777776665532221 123445677788
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhc
Q 048578 282 EEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDY 361 (519)
Q Consensus 282 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 361 (519)
+.|.++.++.. +...|..|.......|+++-|++.|++... |..|+-.|.-.|+.+...++.+.....
T Consensus 335 ~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~- 402 (443)
T PF04053_consen 335 DIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER- 402 (443)
T ss_dssp HHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT-
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc-
Confidence 88777765544 566788888888888888888888877542 445555666677777666666655542
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 048578 362 KVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMP 394 (519)
Q Consensus 362 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 394 (519)
| -++....++.-.|+.++..+++.+.+
T Consensus 403 ~------~~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 403 G------DINIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp T-------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred c------CHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 2 24445556666777777777777664
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.44 E-value=1.6 Score=37.88 Aligned_cols=24 Identities=13% Similarity=0.189 Sum_probs=12.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHH
Q 048578 198 WTAMINGHVKQKNYREGIDLFRKM 221 (519)
Q Consensus 198 ~~~li~~~~~~~~~~~a~~~~~~m 221 (519)
|..-..+|...+++++|-..+.+.
T Consensus 34 yekAAvafRnAk~feKakdcLlkA 57 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKA 57 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHH
Confidence 444444555555555555544444
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.9 Score=35.13 Aligned_cols=137 Identities=12% Similarity=0.137 Sum_probs=75.8
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchh---HHHHHHHHHHhcCCH
Q 048578 205 HVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDK---LGAALTDMYAKCGYI 281 (519)
Q Consensus 205 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~ 281 (519)
..-.|..++..++..+.... .+..-++.++.-....-+-+-..+.++.+-+ ..|.. -...++.+|+..|.
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis~C~NlKrVi~C~~~~n~- 84 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDISKCGNLKRVIECYAKRNK- 84 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GGG-S-THHHHHHHHHTT--
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCchhhcchHHHHHHHHHhcc-
Confidence 44567777778887777653 2444555555443333333333333333322 22221 12334455554443
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhc
Q 048578 282 EEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDY 361 (519)
Q Consensus 282 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 361 (519)
+.......+..+...|+-++-.+++.++.+.+ .++......+..+|.+.|+..++.+++.+..+.
T Consensus 85 -------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek- 149 (161)
T PF09205_consen 85 -------------LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEK- 149 (161)
T ss_dssp ---------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-
T ss_pred -------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-
Confidence 23344556777888888888888888887543 778888888888999999999999988888873
Q ss_pred CC
Q 048578 362 KV 363 (519)
Q Consensus 362 ~~ 363 (519)
|+
T Consensus 150 G~ 151 (161)
T PF09205_consen 150 GL 151 (161)
T ss_dssp T-
T ss_pred ch
Confidence 55
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.42 E-value=2.3 Score=39.61 Aligned_cols=274 Identities=12% Similarity=0.075 Sum_probs=127.6
Q ss_pred CChHHHHHHHhcC---CCCCcchHHHHHHHH--HhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHH
Q 048578 79 SQIAYAHLVFNQI---INPSTFAFNTVIRGY--AEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSL 153 (519)
Q Consensus 79 ~~~~~A~~~~~~~---~~~~~~~~~~ll~~~--~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~ 153 (519)
|+-..|.++-.+. ...|....-.++.+- .-.|+++.|.+-|+.|... +.|-..=+++
T Consensus 98 Gda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-----PEtRllGLRg------------- 159 (531)
T COG3898 98 GDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-----PETRLLGLRG------------- 159 (531)
T ss_pred CchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-----hHHHHHhHHH-------------
Confidence 5666666655443 234555444444433 2357777777777777652 1111111111
Q ss_pred HHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-chhHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCC
Q 048578 154 VVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTE--K-NVVTWTAMINGHVKQKNYREGIDLFRKMRDSG-VEVN 229 (519)
Q Consensus 154 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~ 229 (519)
|.----+.|+.+.|.++-+.... | -...+...+...+..|+|+.|+++++.-+... +.++
T Consensus 160 ----------------LyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~ 223 (531)
T COG3898 160 ----------------LYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKD 223 (531)
T ss_pred ----------------HHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchh
Confidence 11112244566666655554433 2 23456677777777777777777776655442 2233
Q ss_pred HH--HHHHHHHHHh---ccCChHHHHHHHHHHHHcCCCcchhH-HHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHH
Q 048578 230 EL--TLVSVLSACA---NLGASELGKWVHEFVNKNCIILNDKL-GAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSII 303 (519)
Q Consensus 230 ~~--~~~~ll~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~ 303 (519)
.. .-..|+.+-. -..+...|...-.+..+. .|+..- -..-..++++.|+..++-.+++.+-+..++.--..+
T Consensus 224 ~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~l 301 (531)
T COG3898 224 VAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALL 301 (531)
T ss_pred hHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHH
Confidence 21 1122222211 112344444444444332 222211 112244566666666666666666443332222222
Q ss_pred HHHHHcCChHHHHHHHHHHHH-CCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhc-
Q 048578 304 GGLAIHGCGEEAVKMFWQMQM-SGIKPDD-VTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRA- 380 (519)
Q Consensus 304 ~~~~~~g~~~~a~~~~~~m~~-~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 380 (519)
..+.+.|+ .+..-+++... ..++||. .....+..+....|++..|..--+.... ..|....|..|.+.-...
T Consensus 302 Y~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r---~~pres~~lLlAdIeeAet 376 (531)
T COG3898 302 YVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR---EAPRESAYLLLADIEEAET 376 (531)
T ss_pred HHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh---hCchhhHHHHHHHHHhhcc
Confidence 22333333 23333333221 1123332 3555555556666666655554444432 345555555555544333
Q ss_pred CChHHHHHHHHhC
Q 048578 381 RLLDEAYEVIRNM 393 (519)
Q Consensus 381 ~~~~~A~~~~~~~ 393 (519)
|+-.++..++.+.
T Consensus 377 GDqg~vR~wlAqa 389 (531)
T COG3898 377 GDQGKVRQWLAQA 389 (531)
T ss_pred CchHHHHHHHHHH
Confidence 5666666555544
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.93 Score=43.39 Aligned_cols=140 Identities=10% Similarity=0.046 Sum_probs=92.1
Q ss_pred CHHHHHHHHhhcC---CCC---hhhHHHHHHHHHH---------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 048578 280 YIEEALRVFKIVL---EKN---VCTWNSIIGGLAI---------HGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHA 344 (519)
Q Consensus 280 ~~~~a~~~~~~~~---~~~---~~~~~~l~~~~~~---------~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 344 (519)
..+.|..+|.+.. +-| ...|..+..++.. .....+|.+..++..+.+ +-|......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 3567888888887 434 3444444433322 123456677777777765 55677777777777778
Q ss_pred CcHHHHHHHHHHcHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH---HHHHHHHHHccccCCCCHH
Q 048578 345 GLIEKGKEIFYNMRRDYKVEPN-VKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPNAV---LWGSLLTACASADDGANVE 419 (519)
Q Consensus 345 g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~---~~~~ll~~~~~~~~~~~~~ 419 (519)
++++.|...|+.... +.|| ..+|....-.+.-.|+.++|.+.+++. .+.|... .....+..|.. ...+
T Consensus 352 ~~~~~a~~~f~rA~~---L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~----~~~~ 424 (458)
T PRK11906 352 GQAKVSHILFEQAKI---HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP----NPLK 424 (458)
T ss_pred cchhhHHHHHHHHhh---cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC----Cchh
Confidence 889999999998876 3454 456666666677789999999998884 6666443 44444445654 3577
Q ss_pred HHHHHHHH
Q 048578 420 LAEIAMER 427 (519)
Q Consensus 420 ~a~~~~~~ 427 (519)
.|++++-+
T Consensus 425 ~~~~~~~~ 432 (458)
T PRK11906 425 NNIKLYYK 432 (458)
T ss_pred hhHHHHhh
Confidence 77777655
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.22 Score=43.76 Aligned_cols=109 Identities=10% Similarity=0.154 Sum_probs=81.8
Q ss_pred HHHHHhcCC--CCchhHHHHHHHHHHH-----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-----------
Q 048578 183 AQLLFDQMT--EKNVVTWTAMINGHVK-----QKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLG----------- 244 (519)
Q Consensus 183 A~~~~~~~~--~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~----------- 244 (519)
.+..|.... +.|-.+|.+.+..+.. .+.++-....++.|.+.|+.-|..+|+.|++.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345566655 4677788877776653 4667777788889999999999999999998876543
Q ss_pred -----ChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCH-HHHHHHHhhc
Q 048578 245 -----ASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYI-EEALRVFKIV 291 (519)
Q Consensus 245 -----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~ 291 (519)
+-+.+.+++++|...|+.||-.+-..|++++.+.+.. .+..++.--|
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 4456788999999999999999999999999887753 3344444333
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.27 E-value=1.8 Score=37.69 Aligned_cols=219 Identities=18% Similarity=0.067 Sum_probs=156.4
Q ss_pred CChHHHHHHHHHHHHcCCC-cchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CChhhHHHHHHHHHHcCChHHHHH
Q 048578 244 GASELGKWVHEFVNKNCII-LNDKLGAALTDMYAKCGYIEEALRVFKIVLE-----KNVCTWNSIIGGLAIHGCGEEAVK 317 (519)
Q Consensus 244 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~ 317 (519)
+....+...+......... ............+...+.+..+...+..... .....+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3344444444444443322 1356677778888889999999888877643 344567777778888888999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHH-HHhccCcHHHHHHHHHHcHHhcCC--CCChhHHHHHHHHHHhcCChHHHHHHHHhC-
Q 048578 318 MFWQMQMSGIKPDDVTLIAVLT-ACSHAGLIEKGKEIFYNMRRDYKV--EPNVKHYGCLVDLLCRARLLDEAYEVIRNM- 393 (519)
Q Consensus 318 ~~~~m~~~g~~p~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~- 393 (519)
.+.........+. ........ ++...|+++.|...+.+... ... ......+......+...++.+.+...+...
T Consensus 117 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 9999887543331 22222333 78899999999999999855 221 123344445555577889999999999888
Q ss_pred CCCCC--HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 394 PMEPN--AVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 394 ~~~p~--~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
...++ ...+..+...+.. .++++.+...+.......|.....+..+...+...|.++++...+++......
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLK---LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred hhCcccchHHHHHhhHHHHH---cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 44444 5677777777888 88999999999999999987666777777777777889999998888776544
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.17 Score=44.52 Aligned_cols=86 Identities=20% Similarity=0.077 Sum_probs=42.8
Q ss_pred HcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCC-hhHHHHHHHHHHhcCChH
Q 048578 308 IHGCGEEAVKMFWQMQMSGI--KPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPN-VKHYGCLVDLLCRARLLD 384 (519)
Q Consensus 308 ~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 384 (519)
+.|++..|...|...++..- .-....+..|..++...|+++.|..+|..+.+.++-.|- +..+-.|.....+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 44556666666666554320 011124445556666666666666666655554333222 244444445555555555
Q ss_pred HHHHHHHhC
Q 048578 385 EAYEVIRNM 393 (519)
Q Consensus 385 ~A~~~~~~~ 393 (519)
+|..+|++.
T Consensus 233 ~A~atl~qv 241 (262)
T COG1729 233 EACATLQQV 241 (262)
T ss_pred HHHHHHHHH
Confidence 555555444
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.22 Score=43.82 Aligned_cols=98 Identities=12% Similarity=0.079 Sum_probs=75.8
Q ss_pred HHHHhhcC--CCChhhHHHHHHHHHH-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC------------
Q 048578 285 LRVFKIVL--EKNVCTWNSIIGGLAI-----HGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAG------------ 345 (519)
Q Consensus 285 ~~~~~~~~--~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g------------ 345 (519)
+..|..+. ++|-.+|.+.+..|.. .+.++-....++.|.+-|+.-|..+|..|++.+=+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 44455554 5677788888777754 3667777888889999999999999999998765532
Q ss_pred ----cHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCCh
Q 048578 346 ----LIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLL 383 (519)
Q Consensus 346 ----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 383 (519)
+-+=++++++.|.. +|+.||..+-..|+.++.+.+-.
T Consensus 134 HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhcccccc
Confidence 33457889999988 79999999999999999887753
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.10 E-value=3.8 Score=40.44 Aligned_cols=180 Identities=14% Similarity=0.063 Sum_probs=123.7
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC--CCCHHHHHHH
Q 048578 263 LNDKLGAALTDMYAKCGYIEEALRVFKIVLEK---NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGI--KPDDVTLIAV 337 (519)
Q Consensus 263 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~l 337 (519)
++..+|...+..-.+.|+.+.+.-+|++..-| =...|-..+.-....|+.+-|..++....+--+ .|....+.+.
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 35667888888888999999999999988665 234555555555566999988888877654332 2333333333
Q ss_pred HHHHhccCcHHHHHHHHHHcHHhcCCCCCh-hHHHHHHHHHHhcCChHHHH---HHHHhC-CCCCCHHH----HHHHHHH
Q 048578 338 LTACSHAGLIEKGKEIFYNMRRDYKVEPNV-KHYGCLVDLLCRARLLDEAY---EVIRNM-PMEPNAVL----WGSLLTA 408 (519)
Q Consensus 338 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~---~~~~~~-~~~p~~~~----~~~ll~~ 408 (519)
.+-..|+++.|..+++.+.++ . |+. ..-..-+....+.|..+.+. +++... ...-+... +.-....
T Consensus 375 --f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~ 449 (577)
T KOG1258|consen 375 --FEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARL 449 (577)
T ss_pred --HHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHH
Confidence 345668999999999999984 3 543 33334556677888888887 555544 11212222 2222222
Q ss_pred -HccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC
Q 048578 409 -CASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKA 450 (519)
Q Consensus 409 -~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 450 (519)
+.. .++.+.|..++.++.+..|++...|..++......+
T Consensus 450 ~~~i---~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 450 RYKI---REDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHH---hcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 333 668999999999999999999999999999888776
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.55 Score=42.88 Aligned_cols=207 Identities=12% Similarity=0.030 Sum_probs=122.8
Q ss_pred HHHcCChHHHHHHHHHHHHCC--CCCCHH-----HHHHHHHHHhccC-cHHHHHHHHHHcHHhc-------CCCCC----
Q 048578 306 LAIHGCGEEAVKMFWQMQMSG--IKPDDV-----TLIAVLTACSHAG-LIEKGKEIFYNMRRDY-------KVEPN---- 366 (519)
Q Consensus 306 ~~~~g~~~~a~~~~~~m~~~g--~~p~~~-----~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~-------~~~~~---- 366 (519)
..+.|+++.|...+.+..... ..|+.. .+..+.......+ +++.|...+++..+-. ...|+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 357899999999999986532 344442 2333344445566 9999999988876521 12233
Q ss_pred -hhHHHHHHHHHHhcCChH---HHHHHHHhC-CCCCC-HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHH
Q 048578 367 -VKHYGCLVDLLCRARLLD---EAYEVIRNM-PMEPN-AVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYV 440 (519)
Q Consensus 367 -~~~~~~l~~~~~~~~~~~---~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 440 (519)
..+...++.+|...+..+ +|..+++.+ +--|+ ...+..-+..+.+ .++.+.+.+.+.+|+..-+-....+.
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~---~~~~~~~~~~L~~mi~~~~~~e~~~~ 159 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLK---SFDEEEYEEILMRMIRSVDHSESNFD 159 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhc---cCChhHHHHHHHHHHHhcccccchHH
Confidence 245667788888877655 455555555 22344 3455556677777 78999999999999987654455666
Q ss_pred HHHHHHH--hcCCchHHHHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCCChhHHHHHHHHHHHHHHhcccCC
Q 048578 441 LMSNIYA--AKAQWDDAGKMRRLMKERNIVKNPGCSVIEINDVVHEFMVGDGRHPCSEEIYSMLEYVAISLREECYAA 516 (519)
Q Consensus 441 ~l~~~~~--~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 516 (519)
..+..+. .......|...+.++....+.|.+.. |++..-..+.++..........+..+.++++.....+....|
T Consensus 160 ~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ 236 (278)
T PF08631_consen 160 SILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQ 236 (278)
T ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCC
Confidence 5555552 22344678888888887777765542 322221111222222223334444555555555445444444
|
It is also involved in sporulation []. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.06 E-value=1.4 Score=35.26 Aligned_cols=129 Identities=12% Similarity=0.017 Sum_probs=80.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHH
Q 048578 298 TWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLL 377 (519)
Q Consensus 298 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (519)
....++..+...+.......+++.+...+ ..+...++.++..|++.+ .++....+.. . .+.......++.|
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~-----~~~yd~~~~~~~c 79 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--K-----SNHYDIEKVGKLC 79 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--c-----cccCCHHHHHHHH
Confidence 34456667777778888888888887766 356667778888887653 3344444442 1 2223334467777
Q ss_pred HhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHh
Q 048578 378 CRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAA 448 (519)
Q Consensus 378 ~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 448 (519)
.+.+-++++.-++.++|.. ...+..+.. ..++++.|.+++.+ +.++..|..++..+..
T Consensus 80 ~~~~l~~~~~~l~~k~~~~------~~Al~~~l~--~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l~ 137 (140)
T smart00299 80 EKAKLYEEAVELYKKDGNF------KDAIVTLIE--HLGNYEKAIEYFVK-----QNNPELWAEVLKALLD 137 (140)
T ss_pred HHcCcHHHHHHHHHhhcCH------HHHHHHHHH--cccCHHHHHHHHHh-----CCCHHHHHHHHHHHHc
Confidence 7888888888888887532 222333333 03678888887765 2356677777766653
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.05 E-value=4 Score=40.42 Aligned_cols=157 Identities=12% Similarity=0.121 Sum_probs=84.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCC-CCCC-----cchHHHHHHHHcCc--cc--hHHHHHHHHHhCCCCCchhHHHH
Q 048578 100 NTVIRGYAEAGLGHRGIQLYTQMIGNG-LDPD-----SFTYPILLKACGDL--RQ--VKGVHSLVVKSKDFNSVIHSLTR 169 (519)
Q Consensus 100 ~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~p~-----~~~~~~ll~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~ 169 (519)
..+++...-.||-+.+++++.+..+.+ +.-. ...|+.++..+... .+ ...+.+.+......-|+...|..
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~ 271 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLF 271 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 345555556678888888777765532 1111 12344444444433 12 33444444333323455444433
Q ss_pred -HHHHHHhcCChHHHHHHHhcCCC-----C--chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH-
Q 048578 170 -LITFYCNFGDVKSAQLLFDQMTE-----K--NVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSAC- 240 (519)
Q Consensus 170 -l~~~~~~~g~~~~A~~~~~~~~~-----~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~- 240 (519)
-.+.+...|++++|.+.|+.... + ....+-.+.-++.-..+|++|...|..+.+.. .-+..+|..+..+|
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~ 350 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACL 350 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHH
Confidence 34556677778888877776443 1 12233445556677777788877777777653 33444555544443
Q ss_pred hccCCh-------HHHHHHHHHHH
Q 048578 241 ANLGAS-------ELGKWVHEFVN 257 (519)
Q Consensus 241 ~~~~~~-------~~a~~~~~~~~ 257 (519)
...++. ++|..++.++.
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HhhccchhhhhhHHHHHHHHHHHH
Confidence 345555 56666665553
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.34 Score=38.30 Aligned_cols=116 Identities=16% Similarity=0.096 Sum_probs=57.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhc
Q 048578 303 IGGLAIHGCGEEAVKMFWQMQMSGI--KPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRA 380 (519)
Q Consensus 303 ~~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 380 (519)
.....+.|++++|.+.|+.+...-- .-....-..++.++.+.|+++.|...+++..+-+.-.|+ .-|...+.+++.-
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHHH
Confidence 3344455666666666666654310 112234555566666666666666666666553333333 2233334443332
Q ss_pred CChHHHHHHHHhCCCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCc
Q 048578 381 RLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDG 437 (519)
Q Consensus 381 ~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 437 (519)
...+..+.-+- ....+.+....|...|+.+++.-|++..
T Consensus 96 ~~~~~~~~~~~------------------~~drD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 96 EQDEGSLQSFF------------------RSDRDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHhhhHHhhhc------------------ccccCcHHHHHHHHHHHHHHHHCcCChh
Confidence 22221111110 1112244567788888888888887543
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.33 Score=44.29 Aligned_cols=162 Identities=10% Similarity=0.021 Sum_probs=78.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCC----ChhH
Q 048578 298 TWNSIIGGLAIHGCGEEAVKMFWQMQMS-GIKPD---DVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEP----NVKH 369 (519)
Q Consensus 298 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~-g~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~ 369 (519)
+|..+..++.+..++.+++.+-+.-... |..|. .....++..+....+.++++.+.|+...+-..-.. ....
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 4444555555555555555554443221 22221 12333455556666666777776666654211111 2345
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-------CCCCCHH-----HHHHHHHHHccccCCCCHHHHHHHHHHHHhh----C-
Q 048578 370 YGCLVDLLCRARLLDEAYEVIRNM-------PMEPNAV-----LWGSLLTACASADDGANVELAEIAMERLIKL----E- 432 (519)
Q Consensus 370 ~~~l~~~~~~~~~~~~A~~~~~~~-------~~~p~~~-----~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~----~- 432 (519)
+-.|...|.+..++++|.-+..+. +++--.. ....+.-++.. .|..-.|.+.-+++.++ +
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~---~G~LgdA~e~C~Ea~klal~~Gd 241 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRL---LGRLGDAMECCEEAMKLALQHGD 241 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHH---hcccccHHHHHHHHHHHHHHhCC
Confidence 566666777777776665544333 2221111 22223334555 33344444444443332 2
Q ss_pred -CCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 048578 433 -PFNDGNYVLMSNIYAAKAQWDDAGKMRRLM 462 (519)
Q Consensus 433 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 462 (519)
+........++++|...|+.|.|+.-|+..
T Consensus 242 ra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 242 RALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred hHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 223445556777777777777666655543
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.80 E-value=3.8 Score=38.93 Aligned_cols=130 Identities=14% Similarity=0.122 Sum_probs=87.3
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHcHHhcC-CCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHH-HHHHHHH
Q 048578 333 TLIAVLTACSHAGLIEKGKEIFYNMRRDYK-VEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPNAVLW-GSLLTAC 409 (519)
Q Consensus 333 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~~~-~~ll~~~ 409 (519)
.|...+.+-.+..-++.|..+|-++.+. + +.+++..+++++..++ .|+..-|..+|+-- ..-||...| .-.+..+
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4556666666777778888888888774 5 5677777777777654 56677777777765 333444433 3444455
Q ss_pred ccccCCCCHHHHHHHHHHHHhhCCC--CCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 410 ASADDGANVELAEIAMERLIKLEPF--NDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 410 ~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
.. .++-+.|..+|+..+..-.. -...|..++..-..-|++..+..+=++|.+.-.
T Consensus 477 i~---inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~p 533 (660)
T COG5107 477 IR---INDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVP 533 (660)
T ss_pred HH---hCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcC
Confidence 56 67778888888866543222 256788888888888888888887777776543
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.26 Score=43.43 Aligned_cols=101 Identities=18% Similarity=0.158 Sum_probs=53.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCC-CChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC-HHHHHHHH
Q 048578 333 TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVE-PNVKHYGCLVDLLCRARLLDEAYEVIRNM----PMEPN-AVLWGSLL 406 (519)
Q Consensus 333 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~p~-~~~~~~ll 406 (519)
.|+.-+. +.+.|++..|...|....+.+.-. -....+..|..++...|++++|..+|..+ +-.|- ...+--|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 4444443 344566777777777766632110 11223344666666666666666666655 22221 12333333
Q ss_pred HHHccccCCCCHHHHHHHHHHHHhhCCCCCc
Q 048578 407 TACASADDGANVELAEIAMERLIKLEPFNDG 437 (519)
Q Consensus 407 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 437 (519)
....+ .|+.++|...|+++.+..|..+.
T Consensus 223 ~~~~~---l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 223 VSLGR---LGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHH---hcCHHHHHHHHHHHHHHCCCCHH
Confidence 34444 66666666666666666666443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.86 Score=41.76 Aligned_cols=220 Identities=12% Similarity=0.078 Sum_probs=120.1
Q ss_pred HHhcCChHHHHHHHhcCCCC------chhHHHHHHHHHHHcCChhHHHHHHHHHHhC--CCCCCH---HHHHHHHHHHhc
Q 048578 174 YCNFGDVKSAQLLFDQMTEK------NVVTWTAMINGHVKQKNYREGIDLFRKMRDS--GVEVNE---LTLVSVLSACAN 242 (519)
Q Consensus 174 ~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~---~~~~~ll~~~~~ 242 (519)
+....+.++|+..+.+.... .-.++..+..+.+..|.+++++..--.-.+. ...... ..|..+.+++.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567778888777665441 1235666777778888877776543222211 111111 233344444444
Q ss_pred cCChHHHHHHHHHHHHc-CCC---cchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-------C--ChhhHHHHHHHHHHc
Q 048578 243 LGASELGKWVHEFVNKN-CII---LNDKLGAALTDMYAKCGYIEEALRVFKIVLE-------K--NVCTWNSIIGGLAIH 309 (519)
Q Consensus 243 ~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~--~~~~~~~l~~~~~~~ 309 (519)
..++.+++.+-..-... |.. .......++..++...+.++++++.|+...+ + ....+-.+...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 44555555444433321 111 1223445566777777777888777776632 1 234677777778888
Q ss_pred CChHHHHHHHHHHHH----CCCCCCHHHH-----HHHHHHHhccCcHHHHHHHHHHcHHh---cCCCCC-hhHHHHHHHH
Q 048578 310 GCGEEAVKMFWQMQM----SGIKPDDVTL-----IAVLTACSHAGLIEKGKEIFYNMRRD---YKVEPN-VKHYGCLVDL 376 (519)
Q Consensus 310 g~~~~a~~~~~~m~~----~g~~p~~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~-~~~~~~l~~~ 376 (519)
.|+++|.-+..+..+ -++.-=..-| ..+.-++...|.+-.|.+..++..+- .|..+. ......+.+.
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 888888776665532 1211111122 23334566677777777777666541 122221 2334456677
Q ss_pred HHhcCChHHHHHHHHhC
Q 048578 377 LCRARLLDEAYEVIRNM 393 (519)
Q Consensus 377 ~~~~~~~~~A~~~~~~~ 393 (519)
|...|+.+.|..-|+..
T Consensus 256 yR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHhcccHhHHHHHHHHH
Confidence 77778888877777664
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.57 E-value=1.3 Score=38.04 Aligned_cols=95 Identities=13% Similarity=-0.006 Sum_probs=52.9
Q ss_pred HHHHHHhc-CChHHHHHHHHhC-----CCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCch-------H
Q 048578 373 LVDLLCRA-RLLDEAYEVIRNM-----PMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGN-------Y 439 (519)
Q Consensus 373 l~~~~~~~-~~~~~A~~~~~~~-----~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-------~ 439 (519)
+...|..- .+++.|+..|+.. +-+.+...-..++.+..-+...+++.+|+.+|+++....-+|+-. +
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyf 198 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYF 198 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHH
Confidence 44444433 5666777776665 333344444555554322223889999999999988765443322 1
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 440 VLMSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 440 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
..-+.++.-.++.-.+...+++-.+..+
T Consensus 199 lkAgLChl~~~D~v~a~~ALeky~~~dP 226 (288)
T KOG1586|consen 199 LKAGLCHLCKADEVNAQRALEKYQELDP 226 (288)
T ss_pred HHHHHHhHhcccHHHHHHHHHHHHhcCC
Confidence 1222223333566666677776665443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.36 E-value=1.1 Score=43.58 Aligned_cols=155 Identities=12% Similarity=0.064 Sum_probs=95.6
Q ss_pred HHhcCChHHHHHHHh--cCC-CCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHH
Q 048578 174 YCNFGDVKSAQLLFD--QMT-EKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGK 250 (519)
Q Consensus 174 ~~~~g~~~~A~~~~~--~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 250 (519)
..-.++++++.++.+ ++. .-.....+.++..+-+.|.++.|+++..+-. .-.....+.|+++.|.
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~ 338 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIAL 338 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHH
T ss_pred HHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHH
Confidence 344677887655554 211 1123457778888888888888887754321 1233445678888777
Q ss_pred HHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 048578 251 WVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPD 330 (519)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~ 330 (519)
++.+. ..+...|..|.+...+.|+++-|++.|.+.. -|..|+-.|.-.|+.+...++.+.....|
T Consensus 339 ~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~-----d~~~L~lLy~~~g~~~~L~kl~~~a~~~~---- 403 (443)
T PF04053_consen 339 EIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAK-----DFSGLLLLYSSTGDREKLSKLAKIAEERG---- 403 (443)
T ss_dssp HHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT----
T ss_pred HHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc-----CccccHHHHHHhCCHHHHHHHHHHHHHcc----
Confidence 65433 2356688888888888999999988888764 36666777778888888877777777665
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHc
Q 048578 331 DVTLIAVLTACSHAGLIEKGKEIFYNM 357 (519)
Q Consensus 331 ~~~~~~l~~~~~~~g~~~~a~~~~~~~ 357 (519)
-++....++.-.|+.++..+++.+.
T Consensus 404 --~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 404 --DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp ---HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred --CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 2445555566668887777776655
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.21 E-value=3.1 Score=35.40 Aligned_cols=32 Identities=19% Similarity=0.382 Sum_probs=25.1
Q ss_pred CchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 436 DGNYVLMSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 436 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
..+|..|+.-|...|+.++|..+|+.....++
T Consensus 237 TEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 237 TETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 45777888888888999999888887766544
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.19 E-value=5.8 Score=38.45 Aligned_cols=57 Identities=12% Similarity=-0.011 Sum_probs=30.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHHcH
Q 048578 302 IIGGLAIHGCGEEAVKMFWQMQMSGIK-PDDVTLIAVLTACSHAGLIEKGKEIFYNMR 358 (519)
Q Consensus 302 l~~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 358 (519)
+..++.+.|+.++|++.+++|.+..-. -+......|+.++...+.+.++..++.+..
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 444455556666666666666543211 112245555666666666666666655553
|
The molecular function of this protein is uncertain. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.51 Score=42.69 Aligned_cols=116 Identities=7% Similarity=0.001 Sum_probs=89.3
Q ss_pred hccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHH----HHHHccccCC
Q 048578 342 SHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-P-MEPNAVLWGSL----LTACASADDG 415 (519)
Q Consensus 342 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~-~~p~~~~~~~l----l~~~~~~~~~ 415 (519)
...|+..+|-..++++.+ ..|.|...+..-=+++...|+.+.-...++++ + -.|+...|..+ ..++.. .
T Consensus 114 ~~~g~~h~a~~~wdklL~--d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E---~ 188 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLD--DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE---C 188 (491)
T ss_pred hccccccHHHHHHHHHHH--hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH---h
Confidence 456788888888999998 56778888888888999999999998888888 3 35665433322 222344 8
Q ss_pred CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 048578 416 ANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLM 462 (519)
Q Consensus 416 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 462 (519)
|-+++|++..+++.+++|.|.-+.-.++-++...|+..++.+.+.+-
T Consensus 189 g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 189 GIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred ccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 88999999999999999988777777777788888888888876654
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.67 Score=35.70 Aligned_cols=89 Identities=15% Similarity=0.066 Sum_probs=55.6
Q ss_pred HHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCCHHHHHHHHH---HHccc
Q 048578 340 ACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM----PMEPNAVLWGSLLT---ACASA 412 (519)
Q Consensus 340 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~p~~~~~~~ll~---~~~~~ 412 (519)
+....|+++.|++.|..... -.+.....||.-..++.-.|+.++|++-+++. |-+ ......+.++ .|..
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl- 127 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRL- 127 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHH-
Confidence 45566777777777777665 34455667777777777777777777766665 212 2222222222 2555
Q ss_pred cCCCCHHHHHHHHHHHHhhCCC
Q 048578 413 DDGANVELAEIAMERLIKLEPF 434 (519)
Q Consensus 413 ~~~~~~~~a~~~~~~~~~~~p~ 434 (519)
.|+.+.|..-|+.+.+++..
T Consensus 128 --~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 128 --LGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred --hCchHHHHHhHHHHHHhCCH
Confidence 77788888888877777643
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.05 E-value=4.7 Score=36.84 Aligned_cols=117 Identities=12% Similarity=0.121 Sum_probs=57.4
Q ss_pred HhcCChHHHHHHHhcCCC------Cch------hHHHHHHHHHHHcC-ChhHHHHHHHHHHhC--------CCCCCH---
Q 048578 175 CNFGDVKSAQLLFDQMTE------KNV------VTWTAMINGHVKQK-NYREGIDLFRKMRDS--------GVEVNE--- 230 (519)
Q Consensus 175 ~~~g~~~~A~~~~~~~~~------~~~------~~~~~li~~~~~~~-~~~~a~~~~~~m~~~--------~~~~~~--- 230 (519)
.+.|+.+.|..++.+... |+. ..||. .......+ +++.|...+++..+- ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~-G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNI-GKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHH-HHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 456788888888777654 221 12333 33334445 777776666554332 112222
Q ss_pred --HHHHHHHHHHhccCChHHH---HHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC
Q 048578 231 --LTLVSVLSACANLGASELG---KWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLE 293 (519)
Q Consensus 231 --~~~~~ll~~~~~~~~~~~a---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 293 (519)
.++..++.++...+..+.. ..+.+.+.+. .+..+.++..-+..+.+.++.+.+.+.+.+|+.
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~ 149 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIR 149 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHH
Confidence 2344455556555544433 3333333222 222234444445555555666666666666543
|
It is also involved in sporulation []. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.01 E-value=7.6 Score=40.09 Aligned_cols=177 Identities=12% Similarity=0.007 Sum_probs=103.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCCchh---HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 048578 166 SLTRLITFYCNFGDVKSAQLLFDQMTEKNVV---TWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACAN 242 (519)
Q Consensus 166 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 242 (519)
....-++.+++...++-|..+-+.-..+... ........+.+.|++++|...|-+-... +.|. .++.-+..
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLd 409 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLD 409 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcC
Confidence 3445566666677777777766554332111 2222334456778888888777665432 2332 23444555
Q ss_pred cCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhh--HHHHHHHHHHcCChHHHHHHHH
Q 048578 243 LGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCT--WNSIIGGLAIHGCGEEAVKMFW 320 (519)
Q Consensus 243 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~ 320 (519)
......-..+++.+.+.|. .+...-..|+.+|.+.++.+.-.++.+... .+... ....+..+.+.+-.++|..+-.
T Consensus 410 aq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~ 487 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLAT 487 (933)
T ss_pred HHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHH
Confidence 5566666677777777774 345555678888888888888777776665 22222 3445556666666666665554
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcH
Q 048578 321 QMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMR 358 (519)
Q Consensus 321 ~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 358 (519)
+... .......+ +-..|++++|.++++.+.
T Consensus 488 k~~~-----he~vl~il---le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 488 KFKK-----HEWVLDIL---LEDLHNYEEALRYISSLP 517 (933)
T ss_pred Hhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence 4332 22333333 345678888888877663
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=93.95 E-value=6 Score=37.76 Aligned_cols=324 Identities=12% Similarity=0.072 Sum_probs=179.8
Q ss_pred HHHHHHHhhcCCCChHHHHHHHhcCCC--------CCcchHHHHHHHHHhc--------CC-------hhHHHHHHHHHH
Q 048578 67 QLAKLIESLVNSSQIAYAHLVFNQIIN--------PSTFAFNTVIRGYAEA--------GL-------GHRGIQLYTQMI 123 (519)
Q Consensus 67 ~ll~~~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~ll~~~~~~--------g~-------~~~a~~~~~~m~ 123 (519)
..++.+... |++.+++.+++++.+ -+..+||.++-.+++. .. ++.++-...+|.
T Consensus 133 i~a~sLIe~---g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~ 209 (549)
T PF07079_consen 133 IEAHSLIET---GRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIH 209 (549)
T ss_pred HHHHHHHhc---CCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHH
Confidence 344555666 999999999998843 4778888855444332 11 234444444444
Q ss_pred hC------CCCCCcchHHHHHHHHcCccc-----hHHHHHHHHHhCCCCCchh-HHHHHHHHHHhcCChHHHHHHHhcCC
Q 048578 124 GN------GLDPDSFTYPILLKACGDLRQ-----VKGVHSLVVKSKDFNSVIH-SLTRLITFYCNFGDVKSAQLLFDQMT 191 (519)
Q Consensus 124 ~~------g~~p~~~~~~~ll~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~ 191 (519)
.. .+.|....+..++....-... ..++++.....- +.|+-. +...+..-+.. +.+++..+-+.+.
T Consensus 210 ~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~y-v~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia 286 (549)
T PF07079_consen 210 AFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFY-VHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIA 286 (549)
T ss_pred HHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhc-cCCchhHHHHHHHHHHhc--ChHHHHHHHHHHH
Confidence 32 234555555666655443333 444444444444 556533 33444444444 4455544444432
Q ss_pred C--------CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHH-------HHHHHHh-ccC---ChHHHHHH
Q 048578 192 E--------KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLV-------SVLSACA-NLG---ASELGKWV 252 (519)
Q Consensus 192 ~--------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-------~ll~~~~-~~~---~~~~a~~~ 252 (519)
. .=+.+|..++....+.++...|.+.+.-+... .|+...-. .+-+..+ .-. +...-..+
T Consensus 287 ~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~l 364 (549)
T PF07079_consen 287 SSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNL 364 (549)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHH
Confidence 2 33457889999999999999999998877654 33332111 1112222 111 22223344
Q ss_pred HHHHHHcCCCcchhHHHHHH---HHHHhcCC-HHHHHHHHhhcCC---CChhhHHHHH----HHHHH---cCChHHHHHH
Q 048578 253 HEFVNKNCIILNDKLGAALT---DMYAKCGY-IEEALRVFKIVLE---KNVCTWNSII----GGLAI---HGCGEEAVKM 318 (519)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~l~---~~~~~~g~-~~~a~~~~~~~~~---~~~~~~~~l~----~~~~~---~g~~~~a~~~ 318 (519)
|+.+...++.. .....-|+ .-+-+.|. -++|+++++.+.+ .|...-|.+. ..|.+ ...+..-+.+
T Consensus 365 we~~qs~DiDr-qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkL 443 (549)
T PF07079_consen 365 WEEIQSYDIDR-QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKL 443 (549)
T ss_pred HHHHHhhcccH-HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 55555444321 11222222 22334444 7788888877743 3443333322 12221 2334444455
Q ss_pred HHHHHHCCCCCCHH----HHHHHHHH--HhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 048578 319 FWQMQMSGIKPDDV----TLIAVLTA--CSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRN 392 (519)
Q Consensus 319 ~~~m~~~g~~p~~~----~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 392 (519)
-+-+.+.|++|-.. .-+.|..| +...|++.++.-.-..+.+ +.|++.+|..+.-++....++++|.+.+..
T Consensus 444 e~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~---iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 444 EDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK---IAPSPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH---hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 55556677776443 33333333 4567888888777666654 678888888888888888899999999888
Q ss_pred CCCCCCHHHHHH
Q 048578 393 MPMEPNAVLWGS 404 (519)
Q Consensus 393 ~~~~p~~~~~~~ 404 (519)
++ |+..++++
T Consensus 521 LP--~n~~~~ds 530 (549)
T PF07079_consen 521 LP--PNERMRDS 530 (549)
T ss_pred CC--CchhhHHH
Confidence 74 45555543
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.11 Score=30.05 Aligned_cols=26 Identities=12% Similarity=0.160 Sum_probs=21.9
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHH
Q 048578 438 NYVLMSNIYAAKAQWDDAGKMRRLMK 463 (519)
Q Consensus 438 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (519)
+|..|+.+|.+.|++++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47789999999999999999999854
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.75 E-value=4.5 Score=35.59 Aligned_cols=59 Identities=15% Similarity=0.087 Sum_probs=44.1
Q ss_pred HHHHccccCCCCHHHHHHHHHHHHhhCCCCC---chHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 048578 406 LTACASADDGANVELAEIAMERLIKLEPFND---GNYVLMSNIYAAKAQWDDAGKMRRLMKERNIV 468 (519)
Q Consensus 406 l~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 468 (519)
.+.|.+ .|.+..|..-++++++.-|+.+ .++..+..+|...|-.++|.+.-+-+ ..+.+
T Consensus 174 aryY~k---r~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl-~~N~p 235 (254)
T COG4105 174 ARYYLK---RGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVL-GANYP 235 (254)
T ss_pred HHHHHH---hcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHH-HhcCC
Confidence 345777 8899999999999998876644 45567778899999999998875444 44443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.45 Score=38.44 Aligned_cols=70 Identities=13% Similarity=-0.026 Sum_probs=32.7
Q ss_pred hcCChHHHHHHHHhC-CCCCCHHHHHHHHHH-HccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 048578 379 RARLLDEAYEVIRNM-PMEPNAVLWGSLLTA-CASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQ 451 (519)
Q Consensus 379 ~~~~~~~A~~~~~~~-~~~p~~~~~~~ll~~-~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 451 (519)
+.++.+++..++..+ -++|.......+-.. +.. .|++.+|.++|+.+.+..|..+..-..++.++...|+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~---r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIV---RGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHH---hCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 445555555555555 334433332222211 334 4555555555555555555444444444444444443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.38 Score=43.10 Aligned_cols=61 Identities=21% Similarity=0.342 Sum_probs=42.9
Q ss_pred HHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048578 401 LWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 401 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
++..++..+.. .|+++.+...+++.+..+|-+...|..++.+|.+.|+...|+..|+++..
T Consensus 155 ~l~~lae~~~~---~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIA---CGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHh---cccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 34445556666 66777777777777777777777777777777777777777777776653
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.62 E-value=2.7 Score=43.14 Aligned_cols=147 Identities=11% Similarity=0.042 Sum_probs=95.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCh
Q 048578 167 LTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGAS 246 (519)
Q Consensus 167 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 246 (519)
.....+.+.+.|++++|...|-+....-.. ..+|.-|....+...-..+++.+.+.|+. +...-..|+.+|.+.++.
T Consensus 371 ~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~ 447 (933)
T KOG2114|consen 371 HRKYGDYLYGKGDFDEATDQYIETIGFLEP--SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDV 447 (933)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHcccCCh--HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcch
Confidence 344456677889999998877665441111 23566667777777778888888888865 555667889999999998
Q ss_pred HHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 048578 247 ELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQ 323 (519)
Q Consensus 247 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 323 (519)
++..++.+... .|.. ..-....+..+.+.+-+++|..+-.+... +......++ -..+++++|++.+..+.
T Consensus 448 ~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-he~vl~ill---e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 448 EKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-HEWVLDILL---EDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-CHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence 88777665544 2211 11134556667777777777776655444 333333333 35678888888887653
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.24 Score=41.15 Aligned_cols=101 Identities=12% Similarity=0.087 Sum_probs=53.4
Q ss_pred HHhccCcHHHHHHHHHHcHHhcCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHccc
Q 048578 340 ACSHAGLIEKGKEIFYNMRRDYKVEPN-----VKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPNA-VLWGSLLTACASA 412 (519)
Q Consensus 340 ~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~ 412 (519)
-+...|++++|..-|..... .+++. ...|..-.-++.+.+.++.|++-..+. .+.|+. .....-..+|..
T Consensus 104 ~~F~ngdyeeA~skY~~Ale--~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek- 180 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALE--SCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK- 180 (271)
T ss_pred HhhhcccHHHHHHHHHHHHH--hCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh-
Confidence 35666777777777777666 23322 223444445556666666666555444 444422 122222233444
Q ss_pred cCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 048578 413 DDGANVELAEIAMERLIKLEPFNDGNYVLMSNI 445 (519)
Q Consensus 413 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 445 (519)
...++.|++-|+++.+.+|....+....+++
T Consensus 181 --~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 181 --MEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred --hhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 5566666666666666666654444444443
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.4 Score=38.01 Aligned_cols=52 Identities=17% Similarity=0.188 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048578 415 GANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
.++.+.+..+++.+.-+.|..+..-..-++.+...|+|++|.++|+.+.+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 4556666666666666666666665666666666666666666666665544
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.55 E-value=1.7 Score=36.43 Aligned_cols=96 Identities=13% Similarity=0.028 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHH--HH
Q 048578 298 TWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDV--TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYG--CL 373 (519)
Q Consensus 298 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--~l 373 (519)
.+..+...|.+.|+.+.|.+.|.++.+....+... .+..+|+.+...+++..+...+.+...-..-..|...-+ ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 46667777788888888888888877765555443 566777777777888887777776655211111111111 11
Q ss_pred H--HHHHhcCChHHHHHHHHhC
Q 048578 374 V--DLLCRARLLDEAYEVIRNM 393 (519)
Q Consensus 374 ~--~~~~~~~~~~~A~~~~~~~ 393 (519)
. -.+...+++.+|-+.|-..
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHcc
Confidence 1 1234567888888877766
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.14 Score=31.39 Aligned_cols=33 Identities=15% Similarity=0.172 Sum_probs=28.8
Q ss_pred CchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 048578 436 DGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIV 468 (519)
Q Consensus 436 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 468 (519)
|.++..++.+|.+.|++++|.+++++..+....
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~ 33 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPD 33 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 457889999999999999999999999886543
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.36 E-value=5 Score=34.93 Aligned_cols=86 Identities=10% Similarity=0.051 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCC---CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048578 164 IHSLTRLITFYCNFGDVKSAQLLFDQMTE---KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSAC 240 (519)
Q Consensus 164 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 240 (519)
...|..-..+|-...++++|...+.+..+ .|...|. ..+.++.|.-+.++|.+. .--...|......|
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 34555566677777888888777666542 2222221 222234444444444332 11122344444556
Q ss_pred hccCChHHHHHHHHHHHH
Q 048578 241 ANLGASELGKWVHEFVNK 258 (519)
Q Consensus 241 ~~~~~~~~a~~~~~~~~~ 258 (519)
...|.++.|-..+++.-+
T Consensus 102 ~E~GspdtAAmaleKAak 119 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAK 119 (308)
T ss_pred HHhCCcchHHHHHHHHHH
Confidence 666666666555555433
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.27 Score=27.78 Aligned_cols=30 Identities=30% Similarity=0.269 Sum_probs=15.2
Q ss_pred HHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC
Q 048578 402 WGSLLTACASADDGANVELAEIAMERLIKLEPF 434 (519)
Q Consensus 402 ~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (519)
+..+...+.. .|++++|++.++++++++|+
T Consensus 4 ~~~lg~~~~~---~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 4 WYYLGQAYYQ---LGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHH---TT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHH---hCCHHHHHHHHHHHHHHCcC
Confidence 3334444555 55555555555555555554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.2 Score=28.44 Aligned_cols=31 Identities=23% Similarity=0.122 Sum_probs=15.8
Q ss_pred HHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC
Q 048578 401 LWGSLLTACASADDGANVELAEIAMERLIKLEPF 434 (519)
Q Consensus 401 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (519)
+|..+...+.. .|++++|...++++++++|+
T Consensus 3 ~~~~~g~~~~~---~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQ---LGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHH---TT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHH---hCCchHHHHHHHHHHHHCcC
Confidence 34444445555 55555555555555555553
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=93.13 E-value=11 Score=39.23 Aligned_cols=198 Identities=13% Similarity=0.053 Sum_probs=107.4
Q ss_pred HHhcCCHHHHHHHHhhcC----CCCh-------hhHHHHHH-HHHHcCChHHHHHHHHHHHHC----CCCCCHHHHHHHH
Q 048578 275 YAKCGYIEEALRVFKIVL----EKNV-------CTWNSIIG-GLAIHGCGEEAVKMFWQMQMS----GIKPDDVTLIAVL 338 (519)
Q Consensus 275 ~~~~g~~~~a~~~~~~~~----~~~~-------~~~~~l~~-~~~~~g~~~~a~~~~~~m~~~----g~~p~~~~~~~l~ 338 (519)
.....++++|..+..++. .++. ..|+++-. .....|+++.|+++.+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345678888888876652 2221 13444432 334568889988888776543 2234445667777
Q ss_pred HHHhccCcHHHHHHHHHHcHHhcCCCCChhH---HHHHH--HHHHhcCChHHH--HHHHHhC-----CCCC----CHHHH
Q 048578 339 TACSHAGLIEKGKEIFYNMRRDYKVEPNVKH---YGCLV--DLLCRARLLDEA--YEVIRNM-----PMEP----NAVLW 402 (519)
Q Consensus 339 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~~l~--~~~~~~~~~~~A--~~~~~~~-----~~~p----~~~~~ 402 (519)
.+..-.|++++|..+.....+. .-.-+... |..+. ..+...|+...+ ...|... +-+| -..+.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 7788889999998887766552 11223333 32222 234556633333 2222222 1122 12244
Q ss_pred HHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCC---chHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCcccE
Q 048578 403 GSLLTACASADDGANVELAEIAMERLIKLEPFND---GNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPGCSV 475 (519)
Q Consensus 403 ~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 475 (519)
..++.++.+ -.+...++..-++-.....|..- ..+..|+.++...|+.++|...+.++......+.+..+|
T Consensus 584 ~~ll~~~~r--~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~ 657 (894)
T COG2909 584 AQLLRAWLR--LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDY 657 (894)
T ss_pred HHHHHHHHH--HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchH
Confidence 444444433 02222233333333222333321 122378888899999999999999998776665555444
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.10 E-value=3.8 Score=32.77 Aligned_cols=40 Identities=13% Similarity=0.053 Sum_probs=16.2
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 048578 201 MINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACA 241 (519)
Q Consensus 201 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 241 (519)
++..+...+.+.....+++.+...+ ..+....+.++..|+
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~ 52 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYA 52 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHH
Confidence 3444444444444444444444333 123333334444433
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.04 E-value=2.8 Score=34.26 Aligned_cols=50 Identities=8% Similarity=0.003 Sum_probs=24.4
Q ss_pred CCCHHHHHHHHHHHHhhC-CCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048578 415 GANVELAEIAMERLIKLE-PFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
.|.++......+-+-.-+ |--......|+.+-.+.|++.+|.+.|+.+..
T Consensus 145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 445554444444332221 32333444555555566666666666655543
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=92.55 E-value=9.7 Score=36.10 Aligned_cols=152 Identities=11% Similarity=-0.036 Sum_probs=76.3
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCC--hhH
Q 048578 295 NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKP---DDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPN--VKH 369 (519)
Q Consensus 295 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~ 369 (519)
...+|..++..+.+.|.++.|...+..+...+... .......-++..-..|+..+|...++...+. .+..+ ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 44567777777778888888888777776533111 2234444455566677777777777766651 11111 111
Q ss_pred HHHHHHHHHhcCChHHHHHH-HHhCCCCCCHHHHHHHHHHHccc---cCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 048578 370 YGCLVDLLCRARLLDEAYEV-IRNMPMEPNAVLWGSLLTACASA---DDGANVELAEIAMERLIKLEPFNDGNYVLMSNI 445 (519)
Q Consensus 370 ~~~l~~~~~~~~~~~~A~~~-~~~~~~~p~~~~~~~ll~~~~~~---~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 445 (519)
...+...+.. ..+..... ........-...+..+...+... -..++.+.+...|..+.+..|.....|..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111000 00000000 00000000011222222222220 015788999999999999998888888877777
Q ss_pred HHhc
Q 048578 446 YAAK 449 (519)
Q Consensus 446 ~~~~ 449 (519)
+.+.
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 6544
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.51 E-value=2.1 Score=35.89 Aligned_cols=94 Identities=16% Similarity=0.045 Sum_probs=63.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHH-----HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCC-ChhHHHHHHHH
Q 048578 303 IGGLAIHGCGEEAVKMFWQMQMSGIKPDDV-----TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEP-NVKHYGCLVDL 376 (519)
Q Consensus 303 ~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~ 376 (519)
..-+.+.|++++|..-|.+.++. +++... .|..-..++.+.+.++.|+.-..+..+ +.| .......-..+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie---l~pty~kAl~RRAea 177 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE---LNPTYEKALERRAEA 177 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh---cCchhHHHHHHHHHH
Confidence 34567789999999999988875 233322 344445577888888888888777776 223 22333344567
Q ss_pred HHhcCChHHHHHHHHhC-CCCCCHH
Q 048578 377 LCRARLLDEAYEVIRNM-PMEPNAV 400 (519)
Q Consensus 377 ~~~~~~~~~A~~~~~~~-~~~p~~~ 400 (519)
|.+...+++|++-|+++ ...|...
T Consensus 178 yek~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcchH
Confidence 88888888998888887 5556543
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=92.49 E-value=8.3 Score=35.19 Aligned_cols=79 Identities=9% Similarity=-0.009 Sum_probs=35.0
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhcCCCCchhHHHHHHHHHHHcCCh----hHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048578 162 SVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNY----REGIDLFRKMRDSGVEVNELTLVSVL 237 (519)
Q Consensus 162 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~----~~a~~~~~~m~~~~~~~~~~~~~~ll 237 (519)
++..+....+..+...|..+-...+..-+..+|...-...+.++.+.|+. +++...+..+... .++...-...+
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~ 112 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAI 112 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHH
Confidence 33334444444454445433333333322334555555555555665553 3455555554332 34444444444
Q ss_pred HHHhc
Q 048578 238 SACAN 242 (519)
Q Consensus 238 ~~~~~ 242 (519)
.++..
T Consensus 113 ~aLG~ 117 (280)
T PRK09687 113 NATGH 117 (280)
T ss_pred HHHhc
Confidence 44433
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.42 E-value=2.5 Score=34.57 Aligned_cols=134 Identities=10% Similarity=0.064 Sum_probs=72.6
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchh-HHHH--H
Q 048578 196 VTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNEL-TLVSVLSACANLGASELGKWVHEFVNKNCIILNDK-LGAA--L 271 (519)
Q Consensus 196 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~--l 271 (519)
..|..-+. +.+.+..++|+.-|..+.+.|...=+. .--.......+.|+-..|...|.++-.....|... -... -
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 34443333 355666677777777776665321111 11112223456667777777777766554333222 1111 1
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCC-C---hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 048578 272 TDMYAKCGYIEEALRVFKIVLEK-N---VCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPD 330 (519)
Q Consensus 272 ~~~~~~~g~~~~a~~~~~~~~~~-~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~ 330 (519)
.-.+...|.+++...-.+-+..+ + ...-.+|.-+-.+.|++.+|...|..+......|.
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~apr 201 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPR 201 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcH
Confidence 22355677777777776666433 1 22344566666778888888888888766444443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=92.24 E-value=10 Score=35.94 Aligned_cols=68 Identities=19% Similarity=0.235 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC----CCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 048578 398 NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPF----NDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIV 468 (519)
Q Consensus 398 ~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 468 (519)
...+|..+...+.+ .|.++.|...+.++.+.++. .+.....-+..+...|+.++|...++......+.
T Consensus 145 ~~~~~l~~a~~aRk---~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~ 216 (352)
T PF02259_consen 145 LAETWLKFAKLARK---AGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLS 216 (352)
T ss_pred HHHHHHHHHHHHHH---CCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Confidence 44578888888888 99999999999998876522 4677788899999999999999999888874443
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.90 E-value=8.4 Score=33.95 Aligned_cols=158 Identities=12% Similarity=0.006 Sum_probs=85.4
Q ss_pred HHhcCCHHHHHHHHhhcCCC------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHH--HHHHHHHHHhcc-
Q 048578 275 YAKCGYIEEALRVFKIVLEK------NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMS-GIKPDDV--TLIAVLTACSHA- 344 (519)
Q Consensus 275 ~~~~g~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~--~~~~l~~~~~~~- 344 (519)
-.+.|++++|.+.|+.+..+ ...+.-.++.++-+.++++.|+..+++.... +-.||.. .|...+.-+...
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQID 123 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCC
Confidence 34556677777777666443 1233444556666777777777777776553 2233332 222222222211
Q ss_pred ---CcHH---HHHHHHHHcHHhcCC---CCChhH------------HHHHHHHHHhcCChHHHHHHHHhC--C--CCC-C
Q 048578 345 ---GLIE---KGKEIFYNMRRDYKV---EPNVKH------------YGCLVDLLCRARLLDEAYEVIRNM--P--MEP-N 398 (519)
Q Consensus 345 ---g~~~---~a~~~~~~~~~~~~~---~~~~~~------------~~~l~~~~~~~~~~~~A~~~~~~~--~--~~p-~ 398 (519)
.|.. .|..-|+.+..++.- .||... =..+.+-|.+.|.+-.|..-+++| . -.+ .
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~ 203 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAV 203 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccch
Confidence 2222 334444444442211 122111 123556788899999888888887 2 122 2
Q ss_pred HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCC
Q 048578 399 AVLWGSLLTACASADDGANVELAEIAMERLIKLEPFN 435 (519)
Q Consensus 399 ~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (519)
...+-.+..+|.. .|-.++|.+.-+-+....|++
T Consensus 204 ~eaL~~l~eaY~~---lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 204 REALARLEEAYYA---LGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHHHHHHHHHH---hCChHHHHHHHHHHHhcCCCC
Confidence 3356667778888 888888877665544444554
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=91.71 E-value=3.3 Score=40.07 Aligned_cols=48 Identities=13% Similarity=-0.031 Sum_probs=27.6
Q ss_pred CCCHHHHHHHHHHHHhhCCC--CCchHHHHHHHHHhcCCchHHHHHHHHH
Q 048578 415 GANVELAEIAMERLIKLEPF--NDGNYVLMSNIYAAKAQWDDAGKMRRLM 462 (519)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m 462 (519)
.|+.++|++.++.+.+..|. +-.....|+.++...+.+.++..++.+-
T Consensus 272 lGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 272 LGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred hCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 55666666666666555443 2335555666666666666666666554
|
The molecular function of this protein is uncertain. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.33 E-value=2.3 Score=38.29 Aligned_cols=77 Identities=8% Similarity=0.182 Sum_probs=37.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHH----hcCCCCChhHHHHHH
Q 048578 299 WNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRR----DYKVEPNVKHYGCLV 374 (519)
Q Consensus 299 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~~l~ 374 (519)
+..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ ..|+.|...+...+.
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 3344444445555555555555554432 33444555555555555555555555444433 235555555544443
Q ss_pred HH
Q 048578 375 DL 376 (519)
Q Consensus 375 ~~ 376 (519)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 33
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=91.32 E-value=25 Score=38.19 Aligned_cols=25 Identities=12% Similarity=0.262 Sum_probs=14.4
Q ss_pred HHHHHHHHHcC--ChhHHHHHHHHHHh
Q 048578 199 TAMINGHVKQK--NYREGIDLFRKMRD 223 (519)
Q Consensus 199 ~~li~~~~~~~--~~~~a~~~~~~m~~ 223 (519)
..+|..|++.+ .++.+++...+...
T Consensus 794 ~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 794 LFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 35566666666 55566655555543
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.31 E-value=17 Score=36.21 Aligned_cols=118 Identities=14% Similarity=-0.002 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-----CCCCCHHHHHHHH
Q 048578 332 VTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-----PMEPNAVLWGSLL 406 (519)
Q Consensus 332 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-----~~~p~~~~~~~ll 406 (519)
.+|...+.--...|+.+.+.-.|+...- .+..=...|-..++-....|+.+-|..++... +-.|....+.+.+
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli--~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLI--PCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHh--HHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 3555555555566666666666665544 11122334444444444556666665555444 2223333332222
Q ss_pred HHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHH
Q 048578 407 TACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAG 456 (519)
Q Consensus 407 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 456 (519)
. -. .|+++.|..+++.+.+.-|.....-..-+....+.|+.+.+.
T Consensus 376 ~--e~---~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 376 E--ES---NGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred H--Hh---hccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 1 12 456666666666666555554444444455555566666555
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=91.30 E-value=7.3 Score=32.08 Aligned_cols=135 Identities=12% Similarity=0.146 Sum_probs=78.3
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHHHHHhCCCCCchhHHHHHHHHHHhc-CChHHHHHHHhcCCCCc
Q 048578 116 IQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNF-GDVKSAQLLFDQMTEKN 194 (519)
Q Consensus 116 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~ 194 (519)
++.+..+.+.|++|+...+..++..+.+.|...++...+.-.- ++++...-..|++.-.+. .-..-|..++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~V-i~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~--- 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHV-IPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG--- 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcc-cCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh---
Confidence 4455556667788888888888888888887666666655544 444444444443322111 11344555555543
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 048578 195 VVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKN 259 (519)
Q Consensus 195 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 259 (519)
..+..+++.+...|++-+|+++.+..... +......++.+..+.+|...-..++......
T Consensus 90 -~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 90 -TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred -hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 24566778888888888888887765322 1122234555655666655555555554443
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=91.28 E-value=12 Score=38.61 Aligned_cols=32 Identities=25% Similarity=0.464 Sum_probs=19.5
Q ss_pred hhHHHHHHHH-----HHhcCChHHHHHHHHhCCCCCC
Q 048578 367 VKHYGCLVDL-----LCRARLLDEAYEVIRNMPMEPN 398 (519)
Q Consensus 367 ~~~~~~l~~~-----~~~~~~~~~A~~~~~~~~~~p~ 398 (519)
..|+..|++. +...|++++|++.++++++-|.
T Consensus 500 ~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~liP~ 536 (613)
T PF04097_consen 500 RETFQLLLDLAEFFDLYHAGQYEQALDIIEKLDLIPL 536 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT-S-S
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC
Confidence 3455544443 4578888888888888877773
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.14 E-value=0.57 Score=27.07 Aligned_cols=25 Identities=12% Similarity=0.244 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHH
Q 048578 197 TWTAMINGHVKQKNYREGIDLFRKM 221 (519)
Q Consensus 197 ~~~~li~~~~~~~~~~~a~~~~~~m 221 (519)
+|+.|...|.+.|++++|+++|++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3556666667777777777766663
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=91.09 E-value=16 Score=35.62 Aligned_cols=176 Identities=12% Similarity=0.049 Sum_probs=93.7
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048578 263 LNDKLGAALTDMYAKCGYIEEALRVFKIVLE--KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTA 340 (519)
Q Consensus 263 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 340 (519)
.|.....+++..+.......-.+.+-.+|.. .+-..+..+++.|..+ ..+.-..+|+++.+. ..|...+.--+.-
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~--dfnDvv~~ReLa~ 140 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEY--DFNDVVIGRELAD 140 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHh--cchhHHHHHHHHH
Confidence 3444444555555555455445555444432 3445566666666666 456666677766664 2333333333333
Q ss_pred HhccCcHHHHHHHHHHcHHhcCCCCC------hhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHc
Q 048578 341 CSHAGLIEKGKEIFYNMRRDYKVEPN------VKHYGCLVDLLCRARLLDEAYEVIRNM----PMEPNAVLWGSLLTACA 410 (519)
Q Consensus 341 ~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~p~~~~~~~ll~~~~ 410 (519)
+...++.+.+..+|.++... +-|. ...|..+...- ..+.+..+.+..++ |..--...+.-+..-|.
T Consensus 141 ~yEkik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 141 KYEKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 33346666777777666652 2221 12343333211 33455555555554 33333444555555566
Q ss_pred cccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHh
Q 048578 411 SADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAA 448 (519)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 448 (519)
. ..++++|++++..+++.+..|.-+...++.-+..
T Consensus 217 ~---~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 217 E---NENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred c---ccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 6 7788888888887777776666555555554443
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=90.76 E-value=3 Score=32.54 Aligned_cols=20 Identities=15% Similarity=0.091 Sum_probs=10.0
Q ss_pred CCCHHHHHHHHHHHHhhCCC
Q 048578 415 GANVELAEIAMERLIKLEPF 434 (519)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~p~ 434 (519)
.++++.+.++.+.+++.+|+
T Consensus 84 lkeY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 84 LKEYSKSLRYVDALLETEPN 103 (149)
T ss_pred HhhHHHHHHHHHHHHhhCCC
Confidence 44555555555555554444
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=90.76 E-value=2 Score=31.57 Aligned_cols=61 Identities=13% Similarity=0.155 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHH
Q 048578 313 EEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVD 375 (519)
Q Consensus 313 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 375 (519)
-+..+-+..+....+.|+.....+.+++|.+.+++..|.++|+.++.+.+.. ...|..+++
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 3566677777777889999999999999999999999999999998865543 336766654
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=90.60 E-value=0.34 Score=25.56 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=19.9
Q ss_pred chHHHHHHHHHhcCCchHHHHHHH
Q 048578 437 GNYVLMSNIYAAKAQWDDAGKMRR 460 (519)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~~ 460 (519)
.+...++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456788889999999999988876
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=90.57 E-value=42 Score=39.54 Aligned_cols=283 Identities=9% Similarity=-0.009 Sum_probs=144.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhc-CCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 048578 166 SLTRLITFYCNFGDVKSAQLLFDQ-MTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLG 244 (519)
Q Consensus 166 ~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 244 (519)
.+..+...|+.-++.|....+... ...|+. ..-|......|+++.|...|+.+.+.+ ++...+++-++......+
T Consensus 1422 l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~ 1497 (2382)
T KOG0890|consen 1422 LYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQ 1497 (2382)
T ss_pred HHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhccc
Confidence 344445577777777777766653 333332 234445567788888888888887663 223556666666666666
Q ss_pred ChHHHHHHHHHHHHcCCCcchhHH-HHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHH--HHHHHHcC--ChHHHHHHH
Q 048578 245 ASELGKWVHEFVNKNCIILNDKLG-AALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSI--IGGLAIHG--CGEEAVKMF 319 (519)
Q Consensus 245 ~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l--~~~~~~~g--~~~~a~~~~ 319 (519)
.++...-..+-..... .+....+ +.=+.+--+.++++....... ..+...|... ...+.+.. +.-.-.+..
T Consensus 1498 ~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i 1573 (2382)
T KOG0890|consen 1498 HLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLI 1573 (2382)
T ss_pred chhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh---cccccchhHHHHHHHHHhhcccchhhHHHHH
Confidence 6666555443333322 2222222 222444456666666666555 4455555444 22222221 111111223
Q ss_pred HHHHHCCCCC--------C-HHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCC------hhHHHHHHHHHHhcCChH
Q 048578 320 WQMQMSGIKP--------D-DVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPN------VKHYGCLVDLLCRARLLD 384 (519)
Q Consensus 320 ~~m~~~g~~p--------~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~ 384 (519)
+.+++.-+.| + ...|..++....-. +.+.-.+.+. ++.++ ..-|..-+..-....+..
T Consensus 1574 ~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~~~~~l~------~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~ 1646 (2382)
T KOG0890|consen 1574 ENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELENSIEELK------KVSYDEDSANNSDNWKNRLERTQPSFRIK 1646 (2382)
T ss_pred HHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHHHHHHHhh------ccCccccccccchhHHHHHHHhchhHHHH
Confidence 3222211111 0 01233332221110 0111111111 22222 122322222211111122
Q ss_pred HHHHHHHhC----CCCC-----CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHH
Q 048578 385 EAYEVIRNM----PMEP-----NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDA 455 (519)
Q Consensus 385 ~A~~~~~~~----~~~p-----~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 455 (519)
+-+--+++. ..+| -..+|....+.+.. .|.++.|...+-.+.+..+ +.++...+..+...|+-..|
T Consensus 1647 epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~---aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~A 1721 (2382)
T KOG0890|consen 1647 EPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARL---AGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNA 1721 (2382)
T ss_pred hHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHh---cccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHH
Confidence 221112211 1122 23467777777777 8999999998888777773 67999999999999999999
Q ss_pred HHHHHHHHhCCCc
Q 048578 456 GKMRRLMKERNIV 468 (519)
Q Consensus 456 ~~~~~~m~~~~~~ 468 (519)
+.++++-.+.+.+
T Consensus 1722 l~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1722 LSVLQEILSKNFP 1734 (2382)
T ss_pred HHHHHHHHHhhcc
Confidence 9999999876654
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.49 E-value=0.35 Score=27.38 Aligned_cols=30 Identities=17% Similarity=0.226 Sum_probs=25.8
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048578 437 GNYVLMSNIYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
.+|..++.+|...|++++|+..+++..+..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 478899999999999999999999987644
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.44 E-value=0.35 Score=27.27 Aligned_cols=30 Identities=10% Similarity=0.155 Sum_probs=25.4
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048578 437 GNYVLMSNIYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
..+..++.+|.+.|++++|.+.+++..+..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 468899999999999999999999987643
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=90.42 E-value=4.3 Score=34.03 Aligned_cols=62 Identities=11% Similarity=0.087 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhccCChHHHHHHHHHHHH
Q 048578 197 TWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNE--LTLVSVLSACANLGASELGKWVHEFVNK 258 (519)
Q Consensus 197 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 258 (519)
.+..+...|++.|+.+.|.+.|.++.+....+.. ..+-.+++.+.-.+++..+.....++..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4455555555666666666666555554322222 2334444555555555555555444433
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=90.33 E-value=2.1 Score=31.06 Aligned_cols=63 Identities=14% Similarity=0.180 Sum_probs=49.0
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHH
Q 048578 311 CGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVD 375 (519)
Q Consensus 311 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 375 (519)
+.-++.+-++.+....+.|+.....+.+++|.+.+++..|.++|+.++.+.+. +...|..++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 44566777777777888999999999999999999999999999988864443 4446665553
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=90.11 E-value=9.5 Score=31.42 Aligned_cols=123 Identities=14% Similarity=0.106 Sum_probs=73.1
Q ss_pred CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccc--hHHHHHHHHHhCCCCCchhHHHH
Q 048578 92 INPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQ--VKGVHSLVVKSKDFNSVIHSLTR 169 (519)
Q Consensus 92 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 169 (519)
..++...|..++..+.+.|++.. +..+...++-+|.......+-.+..... .+-..+.+.+.+ ..+..
T Consensus 25 i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~------~~~~~ 94 (167)
T PF07035_consen 25 IPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG------TAYEE 94 (167)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh------hhHHH
Confidence 44556666667777776665433 3344455555666655555544433322 222222222222 13556
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 048578 170 LITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDS 224 (519)
Q Consensus 170 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 224 (519)
++..+...|++-+|.++.+.....+......++.+..+.+|...-..+|+-....
T Consensus 95 iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 95 IIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6778888999999999998865555555566777777777776666666655554
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=89.74 E-value=16 Score=33.56 Aligned_cols=136 Identities=15% Similarity=0.231 Sum_probs=72.8
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc--cC----ChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHH
Q 048578 211 YREGIDLFRKMRDSGVEVNELTLVSVLSACAN--LG----ASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEA 284 (519)
Q Consensus 211 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 284 (519)
+++.+.+++.|.+.|+.-+..+|.+....... .. ....+..+++.|.+...-.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fL--------------------- 136 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFL--------------------- 136 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccc---------------------
Confidence 34556788889999888887777664433322 11 2334555666665543110
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHHcCC----hHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCc--HHHHHHHHHH
Q 048578 285 LRVFKIVLEKNVCTWNSIIGGLAIHGC----GEEAVKMFWQMQMSGIKPDDV--TLIAVLTACSHAGL--IEKGKEIFYN 356 (519)
Q Consensus 285 ~~~~~~~~~~~~~~~~~l~~~~~~~g~----~~~a~~~~~~m~~~g~~p~~~--~~~~l~~~~~~~g~--~~~a~~~~~~ 356 (519)
..++-..+..++.. ..++ .+.++.+|+.+.+.|+..+.. ....++..+..... ..++..+++.
T Consensus 137 -------Ts~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~ 207 (297)
T PF13170_consen 137 -------TSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNA 207 (297)
T ss_pred -------cCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 00112222222222 1112 245667777777777655443 34444433333322 3467778888
Q ss_pred cHHhcCCCCChhHHHHHHHHH
Q 048578 357 MRRDYKVEPNVKHYGCLVDLL 377 (519)
Q Consensus 357 ~~~~~~~~~~~~~~~~l~~~~ 377 (519)
+.+ .++++....|..+.-..
T Consensus 208 l~~-~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 208 LKK-NGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHH-cCCccccccccHHHHHH
Confidence 877 48887777766554433
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=89.42 E-value=6.8 Score=28.74 Aligned_cols=88 Identities=13% Similarity=0.146 Sum_probs=58.9
Q ss_pred ChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 048578 245 ASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQM 324 (519)
Q Consensus 245 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 324 (519)
..++|..|-+.+...+.. ...+--+-+..+...|+|++|..+.+...-||...|.++-. .+.|..+.+...+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 345555555555554321 22222223456778899999999999888889888877765 467777888888888887
Q ss_pred CCCCCCHHHHHH
Q 048578 325 SGIKPDDVTLIA 336 (519)
Q Consensus 325 ~g~~p~~~~~~~ 336 (519)
+| .|....|..
T Consensus 97 sg-~p~lq~Faa 107 (115)
T TIGR02508 97 SG-DPRLQTFVA 107 (115)
T ss_pred CC-CHHHHHHHH
Confidence 77 666555543
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=89.30 E-value=37 Score=36.99 Aligned_cols=108 Identities=21% Similarity=0.169 Sum_probs=50.1
Q ss_pred HHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 048578 275 YAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIF 354 (519)
Q Consensus 275 ~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 354 (519)
-.+.|.+++|+.++.--.+.-...|.+...-+.....+++|.-.|+..=+ ..-.+.+|...|+|.+|+.+.
T Consensus 918 I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a 988 (1265)
T KOG1920|consen 918 IKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLA 988 (1265)
T ss_pred HHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHH
Confidence 33444455555444332222223344444444455555555555443211 112344556666666666665
Q ss_pred HHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 048578 355 YNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM 393 (519)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 393 (519)
..+.. +-.--..+-..|+.-+...++.-+|-++..+.
T Consensus 989 ~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 989 AQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 55533 11111112244555566666666666666555
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.16 E-value=30 Score=35.75 Aligned_cols=64 Identities=19% Similarity=0.325 Sum_probs=37.1
Q ss_pred HHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHcc
Q 048578 336 AVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACAS 411 (519)
Q Consensus 336 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~ 411 (519)
..+..|.+.|-+++-.-++.+|-. ++.+|.-.--+.+++++|+++.++ .-|...|..||..+..
T Consensus 639 kA~eiC~q~~~~~E~VYlLgrmGn---------~k~AL~lII~el~die~AIefvKe---q~D~eLWe~LI~~~ld 702 (846)
T KOG2066|consen 639 KALEICSQKNFYEELVYLLGRMGN---------AKEALKLIINELRDIEKAIEFVKE---QDDSELWEDLINYSLD 702 (846)
T ss_pred HHHHHHHhhCcHHHHHHHHHhhcc---------hHHHHHHHHHHhhCHHHHHHHHHh---cCCHHHHHHHHHHhhc
Confidence 344455555555555555555521 333444444456677777777666 4477778888877655
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=88.94 E-value=0.9 Score=25.58 Aligned_cols=19 Identities=26% Similarity=0.281 Sum_probs=9.3
Q ss_pred CCCHHHHHHHHHHHHhhCC
Q 048578 415 GANVELAEIAMERLIKLEP 433 (519)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~p 433 (519)
.|++++|...|+++++.+|
T Consensus 14 ~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 14 LGDYEEALEYFEKALELNP 32 (34)
T ss_dssp TTSHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHhhCC
Confidence 4445555555555444444
|
... |
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=88.83 E-value=9.2 Score=34.43 Aligned_cols=112 Identities=12% Similarity=0.121 Sum_probs=67.0
Q ss_pred cCChhHHHHHHHHHHh-CCCCCCcchHHHHHHHHcCccc-----hHHHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHH
Q 048578 109 AGLGHRGIQLYTQMIG-NGLDPDSFTYPILLKACGDLRQ-----VKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKS 182 (519)
Q Consensus 109 ~g~~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 182 (519)
+..+.+|+.+|+..-- ..+--|..+...+++......+ .-++.+.+....+..++..+...++..+++.+++.+
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 3445566666663222 2344566666666666655222 444445554432245666667777777777777777
Q ss_pred HHHHHhcCCC-----CchhHHHHHHHHHHHcCChhHHHHHHHH
Q 048578 183 AQLLFDQMTE-----KNVVTWTAMINGHVKQKNYREGIDLFRK 220 (519)
Q Consensus 183 A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~ 220 (519)
-.++++.... .|...|...|+.-...|+..-..++.++
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 7777766543 3566777777777777776665555443
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=88.61 E-value=0.81 Score=27.20 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=23.3
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048578 437 GNYVLMSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
.+++.|+.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678899999999999999999988864
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=88.29 E-value=0.099 Score=42.21 Aligned_cols=84 Identities=13% Similarity=0.239 Sum_probs=45.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHHHHHhCCCCCchhHHHHHHHHHHhcCChH
Q 048578 102 VIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVK 181 (519)
Q Consensus 102 ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 181 (519)
++..+.+.+.++.....++.+...+...+....+.++..|++.++.+.+.+.+......+ ...++..|.+.|.++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~yd-----~~~~~~~c~~~~l~~ 87 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNNYD-----LDKALRLCEKHGLYE 87 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSSS------CTHHHHHHHTTTSHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccccC-----HHHHHHHHHhcchHH
Confidence 455555666666677777777665555555666666666666665555555554333211 223444455555555
Q ss_pred HHHHHHhcC
Q 048578 182 SAQLLFDQM 190 (519)
Q Consensus 182 ~A~~~~~~~ 190 (519)
+|.-++.++
T Consensus 88 ~a~~Ly~~~ 96 (143)
T PF00637_consen 88 EAVYLYSKL 96 (143)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHHc
Confidence 555554444
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=88.19 E-value=9 Score=36.83 Aligned_cols=120 Identities=15% Similarity=0.109 Sum_probs=54.7
Q ss_pred HcCChHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHH
Q 048578 308 IHGCGEEAVKMF-WQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEA 386 (519)
Q Consensus 308 ~~g~~~~a~~~~-~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 386 (519)
..|++-.|-+-+ ..++.....|+.....+.| +...|+++.+...+....+ -+.....+..++++...+.|++++|
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHH
Confidence 345554443333 2333322334433333322 3455666666665555544 2333444555566666666666666
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC
Q 048578 387 YEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPF 434 (519)
Q Consensus 387 ~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (519)
..+-+.| +-+. +............. .|-++++...++++..++|+
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~---l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADA---LQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHH---HhHHHHHHHHHHHHhccCCh
Confidence 6655555 2111 11111111111222 45556666666666665544
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.17 E-value=5 Score=36.28 Aligned_cols=100 Identities=14% Similarity=0.093 Sum_probs=67.5
Q ss_pred cCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC-Ch-----hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 048578 259 NCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEK-NV-----CTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDV 332 (519)
Q Consensus 259 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~-----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 332 (519)
.|.+....+...++..-....++++++..+-++... +. .+-.+.+..+ -.-++++++.++..=+.-|+-||..
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 344555555556666666667777777777666442 11 1112223322 2346678888888878889999999
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHcHH
Q 048578 333 TLIAVLTACSHAGLIEKGKEIFYNMRR 359 (519)
Q Consensus 333 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 359 (519)
+++.+|..+.+.+++..|..+...+..
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 999999999999999988888777665
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=87.87 E-value=29 Score=34.01 Aligned_cols=96 Identities=8% Similarity=0.023 Sum_probs=55.9
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048578 161 NSVIHSLTRLITFYCNFGDVKSAQLLFDQMTE--KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLS 238 (519)
Q Consensus 161 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 238 (519)
+.+.....+++..+...-...-.+.+..+|.. .+-..|..++.+|... ..++-..+++++.+..+ +...+.--+.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHHHH
Confidence 44555566666777766666666666666654 4555677777777766 56666777776666532 3333333333
Q ss_pred HHhccCChHHHHHHHHHHHHc
Q 048578 239 ACANLGASELGKWVHEFVNKN 259 (519)
Q Consensus 239 ~~~~~~~~~~a~~~~~~~~~~ 259 (519)
-+...++...+..+|..+..+
T Consensus 140 ~~yEkik~sk~a~~f~Ka~yr 160 (711)
T COG1747 140 DKYEKIKKSKAAEFFGKALYR 160 (711)
T ss_pred HHHHHhchhhHHHHHHHHHHH
Confidence 333336666666666665544
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=87.76 E-value=0.57 Score=26.12 Aligned_cols=29 Identities=14% Similarity=0.182 Sum_probs=21.2
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048578 438 NYVLMSNIYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 438 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
++..++.+|.+.|++++|.+.|+++.+..
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 45567777888888888888888776543
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=87.64 E-value=1.1 Score=25.21 Aligned_cols=28 Identities=18% Similarity=0.262 Sum_probs=25.3
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048578 437 GNYVLMSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
.+|..++.+|...|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4688999999999999999999998865
|
... |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=87.59 E-value=14 Score=30.10 Aligned_cols=69 Identities=16% Similarity=0.182 Sum_probs=41.2
Q ss_pred HHhccCcHHHHHHHHHHcHHhcCCCCChhHHH-HHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHcc
Q 048578 340 ACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYG-CLVDLLCRARLLDEAYEVIRNM-PMEPNAVLWGSLLTACAS 411 (519)
Q Consensus 340 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~ 411 (519)
.-...++.+.+..++..+.- +.|...... .-...+...|+|.+|..+|+++ .-.|.......|+..|..
T Consensus 19 ~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 34456677777777777754 334322221 2234456778888888888887 434555555556655555
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=87.55 E-value=23 Score=32.59 Aligned_cols=148 Identities=14% Similarity=0.185 Sum_probs=79.1
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--cC----cHHHHHHHHHHcHHhcCCC--CChhHHHHHHHHHHhcCCh
Q 048578 312 GEEAVKMFWQMQMSGIKPDDVTLIAVLTACSH--AG----LIEKGKEIFYNMRRDYKVE--PNVKHYGCLVDLLCRARLL 383 (519)
Q Consensus 312 ~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~--~g----~~~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~ 383 (519)
+++.+.+++.|.+.|+.-+..+|.+....... .. ...+|..+|+.|++++.+- ++...+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34567788888999888887776654333332 22 3567889999999866543 333444444332 34444
Q ss_pred HH----HHHHHHhC---CCCC-CH-HHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC-CCchHHHHHHHHHhcCCch
Q 048578 384 DE----AYEVIRNM---PMEP-NA-VLWGSLLTACASADDGANVELAEIAMERLIKLEPF-NDGNYVLMSNIYAAKAQWD 453 (519)
Q Consensus 384 ~~----A~~~~~~~---~~~p-~~-~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~ 453 (519)
+. +...|+.+ |+.. |. .....++..+.... ...+.++.++++.+.+.+-. ....|..++-+-.-.+..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~-~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~ 234 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDD-QEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEE 234 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccc-hHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchH
Confidence 33 33444444 5544 33 33344443333311 22255777888888877733 3344555544444444442
Q ss_pred HHHHHHHHH
Q 048578 454 DAGKMRRLM 462 (519)
Q Consensus 454 ~A~~~~~~m 462 (519)
+..+-+.++
T Consensus 235 ~~~~~i~ev 243 (297)
T PF13170_consen 235 KIVEEIKEV 243 (297)
T ss_pred HHHHHHHHH
Confidence 444444444
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.28 E-value=8.9 Score=38.04 Aligned_cols=151 Identities=18% Similarity=0.103 Sum_probs=101.8
Q ss_pred HhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 048578 276 AKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFY 355 (519)
Q Consensus 276 ~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 355 (519)
.-.|+++.|..++..+.+ ..-+.+++.+.+.|-.++|+++- ..||. -| ....+.|+++.|.++..
T Consensus 597 vmrrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~s-------~D~d~-rF----elal~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALELS-------TDPDQ-RF----ELALKLGRLDIAFDLAV 661 (794)
T ss_pred hhhccccccccccccCch---hhhhhHHhHhhhccchHhhhhcC-------CChhh-hh----hhhhhcCcHHHHHHHHH
Confidence 445777777776666553 23344556666777777776542 12222 22 23456789999888766
Q ss_pred HcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCC
Q 048578 356 NMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFN 435 (519)
Q Consensus 356 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (519)
+.. +..-|..|.++....+++..|.+.|.+.. -|..|+-.+.. .|+.+....+-....+.+..|
T Consensus 662 e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~---~g~~~~l~~la~~~~~~g~~N 725 (794)
T KOG0276|consen 662 EAN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTS---SGNAEGLAVLASLAKKQGKNN 725 (794)
T ss_pred hhc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhh---cCChhHHHHHHHHHHhhcccc
Confidence 553 45678999999999999999999998752 24556667777 777777777776666666654
Q ss_pred CchHHHHHHHHHhcCCchHHHHHHHHH
Q 048578 436 DGNYVLMSNIYAAKAQWDDAGKMRRLM 462 (519)
Q Consensus 436 ~~~~~~l~~~~~~~g~~~~A~~~~~~m 462 (519)
.-..+|...|+++++.+++..-
T Consensus 726 -----~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 726 -----LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred -----hHHHHHHHcCCHHHHHHHHHhc
Confidence 3334677889999998887654
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=87.03 E-value=1.3 Score=40.36 Aligned_cols=99 Identities=14% Similarity=-0.019 Sum_probs=71.5
Q ss_pred HHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHccccC
Q 048578 337 VLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PME-PNAVLWGSLLTACASADD 414 (519)
Q Consensus 337 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~~~ 414 (519)
-.+-|.++|.+++|++.|..... -.+.++.++..-..+|.+..++..|..-.... .+. .-...|..-..+-..
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~--- 177 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARES--- 177 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHH---
Confidence 35678999999999999998875 23338889999999999999999887665554 221 112234444444344
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCchHH
Q 048578 415 GANVELAEIAMERLIKLEPFNDGNYV 440 (519)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~p~~~~~~~ 440 (519)
.|+..+|.+-++.++++.|.+-..--
T Consensus 178 Lg~~~EAKkD~E~vL~LEP~~~ELkK 203 (536)
T KOG4648|consen 178 LGNNMEAKKDCETVLALEPKNIELKK 203 (536)
T ss_pred HhhHHHHHHhHHHHHhhCcccHHHHH
Confidence 78899999999999999998544433
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=86.93 E-value=17 Score=34.64 Aligned_cols=121 Identities=12% Similarity=0.051 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHH---hcCChHHHHHHHHhC--CCCCCHHHHHHH
Q 048578 331 DVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLC---RARLLDEAYEVIRNM--PMEPNAVLWGSL 405 (519)
Q Consensus 331 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~~--~~~p~~~~~~~l 405 (519)
..|+..+-..|...|+.+.|.+++++..-.++ .++......+. ..|. .++ ...-|...|.++
T Consensus 40 idtLlqls~v~~~~gd~~~A~~lleRALf~~e-----~~~~~~F~~~~~~~~~g~--------~rL~~~~~eNR~fflal 106 (360)
T PF04910_consen 40 IDTLLQLSEVYRQQGDHAQANDLLERALFAFE-----RAFHPSFSPFRSNLTSGN--------CRLDYRRPENRQFFLAL 106 (360)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-----HHHHHHhhhhhcccccCc--------cccCCccccchHHHHHH
Confidence 34677777777777777777777776653110 00000000000 0000 001 111244555555
Q ss_pred HHHHccccCCCCHHHHHHHHHHHHhhCCC-CCchHHHHHHHHH-hcCCchHHHHHHHHHHh
Q 048578 406 LTACASADDGANVELAEIAMERLIKLEPF-NDGNYVLMSNIYA-AKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 406 l~~~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~ 464 (519)
.......++.|-+..|.++.+-+.+++|. ||......++.|+ +.++++--.++.+....
T Consensus 107 ~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 107 FRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 54433333389999999999999999988 8888888888876 77888878887777654
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=86.81 E-value=2 Score=39.17 Aligned_cols=95 Identities=17% Similarity=0.031 Sum_probs=65.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcC
Q 048578 303 IGGLAIHGCGEEAVKMFWQMQMSGIKP-DDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRAR 381 (519)
Q Consensus 303 ~~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 381 (519)
..-|.+.|.+++|+..|..... +.| |.+++..-..+|.+...+..|+.=......- -..-+..|..-+.+-...|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--d~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--DKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--hHHHHHHHHHHHHHHHHHh
Confidence 4568899999999999998776 456 8889999999999999998887766666541 1112234444444444455
Q ss_pred ChHHHHHHHHhC-CCCCCHHH
Q 048578 382 LLDEAYEVIRNM-PMEPNAVL 401 (519)
Q Consensus 382 ~~~~A~~~~~~~-~~~p~~~~ 401 (519)
...+|.+-++.. .+.|+..-
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHH
Confidence 666666655555 67777443
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=86.01 E-value=46 Score=34.48 Aligned_cols=60 Identities=10% Similarity=0.025 Sum_probs=41.6
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccc-------hHHHHHHHHHh
Q 048578 97 FAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQ-------VKGVHSLVVKS 157 (519)
Q Consensus 97 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-------~~~~~~~~~~~ 157 (519)
..-=.+|-.|.+.|++++|.++..+... ........|...+..+...++ ..++.....+.
T Consensus 112 ~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~ 178 (613)
T PF04097_consen 112 DPIWALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQR 178 (613)
T ss_dssp EEHHHHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHH
T ss_pred CccHHHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHH
Confidence 3344688889999999999999966654 356677888899999977644 34555555443
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.80 E-value=25 Score=31.23 Aligned_cols=242 Identities=17% Similarity=0.191 Sum_probs=138.9
Q ss_pred cCChHHHHHHHhcCCC----Cch---hHHHHHHHHHHHcCChhHHHHHHHHHHhC---C--CCCCHHHHHHHHHHHhccC
Q 048578 177 FGDVKSAQLLFDQMTE----KNV---VTWTAMINGHVKQKNYREGIDLFRKMRDS---G--VEVNELTLVSVLSACANLG 244 (519)
Q Consensus 177 ~g~~~~A~~~~~~~~~----~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~--~~~~~~~~~~ll~~~~~~~ 244 (519)
..+.++|+.-|+...+ ... .+...++..+.+.+++++.+..|.+|... . -.-+..+.+.+++......
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3467777777776644 222 24456778888888888888888777532 1 1234566777777766666
Q ss_pred ChHHHHHHHHHHHHc-----CCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC----C-----------ChhhHHHHHH
Q 048578 245 ASELGKWVHEFVNKN-----CIILNDKLGAALTDMYAKCGYIEEALRVFKIVLE----K-----------NVCTWNSIIG 304 (519)
Q Consensus 245 ~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~-----------~~~~~~~l~~ 304 (519)
+.+....+++.-++. +-..--.+-..|...|...|++.+...++.++.. . -...|..-|+
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 666655555543321 1111222334677778888888888777776622 1 1245777778
Q ss_pred HHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHH-----hccCcHHHHHHHHHHcHHhc---CCCCC--hhHHHHH
Q 048578 305 GLAIHGCGEEAVKMFWQMQMSG-IKPDDVTLIAVLTAC-----SHAGLIEKGKEIFYNMRRDY---KVEPN--VKHYGCL 373 (519)
Q Consensus 305 ~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~l~~~~-----~~~g~~~~a~~~~~~~~~~~---~~~~~--~~~~~~l 373 (519)
.|....+-...-.++++...-. ..|- .....+|+-| .+.|++++|..=|-+..+.+ |.+.. .--|..|
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPH-PlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVL 278 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPH-PLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVL 278 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCc-hHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHH
Confidence 8888777777777777764321 2333 2344455555 35688888865554444422 32222 2234555
Q ss_pred HHHHHhcCC----hHHHHHHHHhCCCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHH
Q 048578 374 VDLLCRARL----LDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVELAEIAMER 427 (519)
Q Consensus 374 ~~~~~~~~~----~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~ 427 (519)
..++.+.|- -.+|. -..-.|.......++.+|.. +++.+-++++..
T Consensus 279 ANMLmkS~iNPFDsQEAK----PyKNdPEIlAMTnlv~aYQ~----NdI~eFE~Il~~ 328 (440)
T KOG1464|consen 279 ANMLMKSGINPFDSQEAK----PYKNDPEILAMTNLVAAYQN----NDIIEFERILKS 328 (440)
T ss_pred HHHHHHcCCCCCcccccC----CCCCCHHHHHHHHHHHHHhc----ccHHHHHHHHHh
Confidence 666666552 11111 01234566677888888875 455555555443
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=85.70 E-value=20 Score=30.17 Aligned_cols=88 Identities=14% Similarity=0.021 Sum_probs=38.5
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCCHHHHHHH-----HHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhc
Q 048578 375 DLLCRARLLDEAYEVIRNMPMEPNAVLWGSL-----LTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAK 449 (519)
Q Consensus 375 ~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~l-----l~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 449 (519)
..+..++++++|...++..--.|....+..+ .+.... .|.++.|...++.....+- .+.....-++++...
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q---~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~k 172 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQ---QKKADAALKTLDTIKEESW-AAIVAELRGDILLAK 172 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHH---hhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHc
Confidence 3445555555555555543112222222222 222333 4555555555443222111 122333445555555
Q ss_pred CCchHHHHHHHHHHhCC
Q 048578 450 AQWDDAGKMRRLMKERN 466 (519)
Q Consensus 450 g~~~~A~~~~~~m~~~~ 466 (519)
|+-++|+.-|++..+.+
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 55555555555555443
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=85.55 E-value=1 Score=36.27 Aligned_cols=53 Identities=13% Similarity=0.011 Sum_probs=27.4
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 048578 202 INGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHE 254 (519)
Q Consensus 202 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 254 (519)
+..+.+.+.+.....+++.+...+...+....+.++..|++.++.+....+++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 44444555555555555555554444445555556666666555555544444
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=85.38 E-value=5.1 Score=33.90 Aligned_cols=74 Identities=16% Similarity=0.113 Sum_probs=51.0
Q ss_pred hcCChHHHHHHHHhCCCCC--CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC----CCchHHHHHHHHHhcCCc
Q 048578 379 RARLLDEAYEVIRNMPMEP--NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPF----NDGNYVLMSNIYAAKAQW 452 (519)
Q Consensus 379 ~~~~~~~A~~~~~~~~~~p--~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~ 452 (519)
+.|+ ++|.+.|-.+.-.| +.......+..|.. ..|.+++..++-+++++.+. |+..+..|+.+|.+.|++
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~---krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYALATYYT---KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH---ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 3344 56777776661122 33444444444444 56899999999999886522 688999999999999999
Q ss_pred hHHH
Q 048578 453 DDAG 456 (519)
Q Consensus 453 ~~A~ 456 (519)
++|-
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8874
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=84.83 E-value=8 Score=28.22 Aligned_cols=46 Identities=13% Similarity=0.120 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 048578 213 EGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNK 258 (519)
Q Consensus 213 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 258 (519)
++.+-++.+....+.|++....+.+++|.+.+|+..|.++++.+..
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3445555555666777777777777777777777777777776653
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.75 E-value=49 Score=33.75 Aligned_cols=153 Identities=14% Similarity=0.040 Sum_probs=85.4
Q ss_pred HHcCChHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHhccC-----cHHHHHHHHHHcHHhcCCCCChhHHHHHH
Q 048578 307 AIHGCGEEAVKMFWQMQM-------SGIKPDDVTLIAVLTACSHAG-----LIEKGKEIFYNMRRDYKVEPNVKHYGCLV 374 (519)
Q Consensus 307 ~~~g~~~~a~~~~~~m~~-------~g~~p~~~~~~~l~~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 374 (519)
....+++.|+.+|+.+.+ .| .......+..+|.+.. +.+.|..++....+ .|. |+.... +.
T Consensus 260 g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~-~g~-~~a~~~--lg 332 (552)
T KOG1550|consen 260 GVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE-LGN-PDAQYL--LG 332 (552)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh-cCC-chHHHH--HH
Confidence 345566777777766655 44 2224455555555532 56778888877776 343 443333 33
Q ss_pred HHHHh---cCChHHHHHHHHhCCCCCCHHHHHHHHHHHcc-ccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHH--HHh
Q 048578 375 DLLCR---ARLLDEAYEVIRNMPMEPNAVLWGSLLTACAS-ADDGANVELAEIAMERLIKLEPFNDGNYVLMSNI--YAA 448 (519)
Q Consensus 375 ~~~~~---~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~-~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~ 448 (519)
..+.. ..+...|.++|......-....+..+...|.. .+-..+.+.|..+++++.+.++. .+...+... +..
T Consensus 333 ~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~--~A~~~~~~~~~~g~ 410 (552)
T KOG1550|consen 333 VLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNP--SAAYLLGAFYEYGV 410 (552)
T ss_pred HHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccCh--hhHHHHHHHHHHcc
Confidence 33322 24567888888877111122222222222111 22256888888888888888833 333333333 333
Q ss_pred cCCchHHHHHHHHHHhCCCcc
Q 048578 449 KAQWDDAGKMRRLMKERNIVK 469 (519)
Q Consensus 449 ~g~~~~A~~~~~~m~~~~~~~ 469 (519)
++++.+.-.+..+.+.|.+-
T Consensus 411 -~~~~~~~~~~~~~a~~g~~~ 430 (552)
T KOG1550|consen 411 -GRYDTALALYLYLAELGYEV 430 (552)
T ss_pred -ccccHHHHHHHHHHHhhhhH
Confidence 78888888887777777654
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=84.61 E-value=1.5 Score=24.96 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=14.9
Q ss_pred CCChhHHHHHHHHHHhcCChHHHH
Q 048578 364 EPNVKHYGCLVDLLCRARLLDEAY 387 (519)
Q Consensus 364 ~~~~~~~~~l~~~~~~~~~~~~A~ 387 (519)
|-+...|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 344566666666666666666664
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=83.03 E-value=3.1 Score=30.27 Aligned_cols=45 Identities=13% Similarity=0.140 Sum_probs=32.4
Q ss_pred HHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 423 IAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 423 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
.-+++.++.+|+|......++..+...|++++|++.+-.+.+...
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr 53 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDR 53 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-T
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 445666677888888888888888888888888888777766554
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=82.98 E-value=16 Score=26.86 Aligned_cols=60 Identities=20% Similarity=0.196 Sum_probs=43.9
Q ss_pred HHHHhcCChHHHHHHHhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 048578 172 TFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLV 234 (519)
Q Consensus 172 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 234 (519)
..+...|++++|..+.+....||...|-+|.. .+.|.-++...-+.+|...| .|....|.
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 44677899999999988888888888877655 46677777777777777665 45444443
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=82.72 E-value=3.5 Score=24.31 Aligned_cols=28 Identities=18% Similarity=0.334 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 048578 196 VTWTAMINGHVKQKNYREGIDLFRKMRD 223 (519)
Q Consensus 196 ~~~~~li~~~~~~~~~~~a~~~~~~m~~ 223 (519)
.+++.|...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3566666667777777777776666543
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=82.29 E-value=11 Score=27.82 Aligned_cols=46 Identities=11% Similarity=0.074 Sum_probs=27.5
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 048578 214 GIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKN 259 (519)
Q Consensus 214 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 259 (519)
..+-++.+....+.|++....+.+.+|.+.+++..|.++++.+...
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4445555555566677777777777777777777777777666554
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=82.08 E-value=2.8 Score=25.52 Aligned_cols=28 Identities=11% Similarity=0.135 Sum_probs=23.6
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 440 VLMSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 440 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
..|+.+|...|+.+.|.++++++...|-
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 4688999999999999999999886443
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF13762 MNE1: Mitochondrial splicing apparatus component | Back alignment and domain information |
|---|
Probab=81.90 E-value=19 Score=28.83 Aligned_cols=91 Identities=10% Similarity=0.114 Sum_probs=59.8
Q ss_pred HHHHHhcCCCCch--hHHHHHHHHHhhcCCCChHHHHHHHhcCC---------CCCcchHHHHHHHHHhcCC-hhHHHHH
Q 048578 51 AQIIKASFDNRTI--SDTQLAKLIESLVNSSQIAYAHLVFNQII---------NPSTFAFNTVIRGYAEAGL-GHRGIQL 118 (519)
Q Consensus 51 ~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~~~~A~~~~~~~~---------~~~~~~~~~ll~~~~~~g~-~~~a~~~ 118 (519)
..|.+.+..+++. ..+.++.-.+.. ++....+.+++.+. ..+..+|+.++.+.++..- --.+..+
T Consensus 26 ~y~~~~~~~~~~k~~fiN~iL~hl~~~---~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~L 102 (145)
T PF13762_consen 26 PYMQEENASQSTKTIFINCILNHLASY---QNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTL 102 (145)
T ss_pred HHhhhcccChhHHHHHHHHHHHHHHHc---cchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHH
Confidence 3445455555543 356677766666 67777666666652 2456678888888866555 3456778
Q ss_pred HHHHHhCCCCCCcchHHHHHHHHcCc
Q 048578 119 YTQMIGNGLDPDSFTYPILLKACGDL 144 (519)
Q Consensus 119 ~~~m~~~g~~p~~~~~~~ll~~~~~~ 144 (519)
|+.|++.+.++++.-|..+++++.+-
T Consensus 103 f~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 103 FNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 88888777778888888888776543
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=81.89 E-value=16 Score=31.04 Aligned_cols=73 Identities=15% Similarity=0.058 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc---CCCcchhHHHHHHHHHHhcCCHHHHH
Q 048578 212 REGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKN---CIILNDKLGAALTDMYAKCGYIEEAL 285 (519)
Q Consensus 212 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~ 285 (519)
+.|.+.|-.+...+.--++ .....+..|....|.+++..++....+. +-.+|+..+.+|+..|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~-elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETA-ELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCH-HHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 4566666666555433333 3333333344456666777666666553 22556667777777777777666653
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=81.30 E-value=73 Score=33.19 Aligned_cols=224 Identities=10% Similarity=-0.065 Sum_probs=115.4
Q ss_pred CChHHHHHHHHHHHHcC-CCcc--hhHHHHHHHHHHhcCCHHHHHHHHhhcCCC--ChhhHHHHHHHHHHcCChHHHHHH
Q 048578 244 GASELGKWVHEFVNKNC-IILN--DKLGAALTDMYAKCGYIEEALRVFKIVLEK--NVCTWNSIIGGLAIHGCGEEAVKM 318 (519)
Q Consensus 244 ~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~ 318 (519)
.+.+.|..++....... ..+. ..+...+.......+...++...++..... +......-+....+.++++.+...
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~ 334 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTW 334 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHH
Confidence 34566666666553322 1111 112233333333322244555555554322 333333334444466666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhc-----------CCC--------CCh------hHHHHH
Q 048578 319 FWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDY-----------KVE--------PNV------KHYGCL 373 (519)
Q Consensus 319 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----------~~~--------~~~------~~~~~l 373 (519)
+..|.... .-...-...+.+++...|+.++|..+|+.+.... |.+ |.. ..--.-
T Consensus 335 i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~r 413 (644)
T PRK11619 335 LARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAPKPDSALTQGPEMAR 413 (644)
T ss_pred HHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCCchhhhhccChHHHH
Confidence 66654321 2233445556666555666666666666653311 111 000 001123
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhC-C--CCCchHHHHHHHHHhcC
Q 048578 374 VDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLE-P--FNDGNYVLMSNIYAAKA 450 (519)
Q Consensus 374 ~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~-p--~~~~~~~~l~~~~~~~g 450 (519)
+..+...|....|...+..+....+......+...... .|..+.++.........+ . .-|..|...+..+.+.-
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~---~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~ 490 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFN---QQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGK 490 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHc
Confidence 45566778888888777666223444555555555555 788888887766543321 1 12445777777777776
Q ss_pred CchHHHHHHHHHHhCCCccCC
Q 048578 451 QWDDAGKMRRLMKERNIVKNP 471 (519)
Q Consensus 451 ~~~~A~~~~~~m~~~~~~~~~ 471 (519)
.++.++-.---.+|.++.|..
T Consensus 491 ~v~~~lv~ai~rqES~f~p~a 511 (644)
T PRK11619 491 GIPQSYAMAIARQESAWNPKA 511 (644)
T ss_pred CCCHHHHHHHHHHhcCCCCCC
Confidence 777777544444577777753
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=81.11 E-value=12 Score=36.02 Aligned_cols=133 Identities=14% Similarity=0.087 Sum_probs=84.3
Q ss_pred HHHHhcCCHHHHHH-HHhhcCC--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHH
Q 048578 273 DMYAKCGYIEEALR-VFKIVLE--KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEK 349 (519)
Q Consensus 273 ~~~~~~g~~~~a~~-~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 349 (519)
.--...|++..|-+ ++..+.. .++.........+...|+++.+...+...... +.....+...+++...+.|+++.
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHH
Confidence 33344567665544 3333322 24444444445567789999999888776543 34566788899999999999999
Q ss_pred HHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHH
Q 048578 350 GKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PME-PNAVLWGSLLTA 408 (519)
Q Consensus 350 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~-p~~~~~~~ll~~ 408 (519)
|...-.-|..+ .+ -+.+....-.......|-++++.-.+++. .+. |....|..++..
T Consensus 376 a~s~a~~~l~~-ei-e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~ 434 (831)
T PRK15180 376 ALSTAEMMLSN-EI-EDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSS 434 (831)
T ss_pred HHHHHHHHhcc-cc-CChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeecc
Confidence 99988888763 33 23333333334445667788888888887 444 344455555554
|
|
| >PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion) | Back alignment and domain information |
|---|
Probab=80.77 E-value=21 Score=26.66 Aligned_cols=86 Identities=10% Similarity=0.149 Sum_probs=45.8
Q ss_pred ChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 048578 245 ASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQM 324 (519)
Q Consensus 245 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 324 (519)
..++|..|.+.+...+. ....+--+-+..+...|+|++|+..=.....||...|.++-. .+.|-.+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 45666666666666553 222222333455667777777744434444566666655544 467777777777777765
Q ss_pred CCCCCCHHHH
Q 048578 325 SGIKPDDVTL 334 (519)
Q Consensus 325 ~g~~p~~~~~ 334 (519)
+| .|....|
T Consensus 98 ~g-~~~~q~F 106 (116)
T PF09477_consen 98 SG-SPELQAF 106 (116)
T ss_dssp -S-SHHHHHH
T ss_pred CC-CHHHHHH
Confidence 55 4444444
|
The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C. |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.28 E-value=6.3 Score=33.70 Aligned_cols=63 Identities=16% Similarity=0.123 Sum_probs=42.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCC
Q 048578 370 YGCLVDLLCRARLLDEAYEVIRNM-PMEPNAV-LWGSLLTACASADDGANVELAEIAMERLIKLEPFN 435 (519)
Q Consensus 370 ~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (519)
.+.-++.+.+.++..+++...++- .-+|... +-..+++.++. .|++++|..-++-+-++.|.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcv---aGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCV---AGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhh---cchHHHHHHHHHHHhhcCccc
Confidence 344456667777788887776554 5566443 44556666777 788888888888777777763
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=80.25 E-value=2.8 Score=23.10 Aligned_cols=27 Identities=26% Similarity=0.123 Sum_probs=18.9
Q ss_pred HHHHHccccCCCCHHHHHHHHHHHHhhCCC
Q 048578 405 LLTACASADDGANVELAEIAMERLIKLEPF 434 (519)
Q Consensus 405 ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (519)
+..++.. .|+.++|.+.|+++++..|+
T Consensus 6 ~a~~~~~---~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYK---LGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHH---HCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHH---ccCHHHHHHHHHHHHHHCcC
Confidence 3444555 67788888888887777775
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 58.7 bits (140), Expect = 3e-09
Identities = 25/191 (13%), Positives = 60/191 (31%), Gaps = 7/191 (3%)
Query: 216 DLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMY 275
L R + E L +L + ++ + ++ + + A
Sbjct: 78 CLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCC 137
Query: 276 AKCGYIEEALRVFKIVLEK-------NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIK 328
+ A + + + + +N+++ G A G +E V + + ++ +G+
Sbjct: 138 LLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLT 197
Query: 329 PDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYE 388
PD ++ A L E ++ L+ RA +L ++
Sbjct: 198 PDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHK 257
Query: 389 VIRNMPMEPNA 399
V + P
Sbjct: 258 VKPTFSLPPQL 268
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 52.5 bits (124), Expect = 3e-07
Identities = 24/148 (16%), Positives = 45/148 (30%), Gaps = 8/148 (5%)
Query: 3 KQLVPNSQLTHFTNSANSHKNSNTATKSHHHLP-LLQKCTHLVQFKQVHAQIIKASFDNR 61
Q+ P + L LLQ+ + A + S
Sbjct: 64 LQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQL 123
Query: 62 TISDTQLAKLIESLVNSSQIAYAHLVFNQIIN-------PSTFAFNTVIRGYAEAGLGHR 114
+ +L + + + Q+ AH + + +N V+ G+A G
Sbjct: 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKE 183
Query: 115 GIQLYTQMIGNGLDPDSFTYPILLKACG 142
+ + + GL PD +Y L+ G
Sbjct: 184 LVYVLFMVKDAGLTPDLLSYAAALQCMG 211
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 47.9 bits (112), Expect = 8e-06
Identities = 19/137 (13%), Positives = 42/137 (30%), Gaps = 10/137 (7%)
Query: 121 QMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVV-----KSKDFNSVIHSLTRLITFYC 175
Q L K C Q+ H L+V + K + ++ +
Sbjct: 117 QHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWA 176
Query: 176 NFGDVKSAQLLFDQMTEK----NVVTWTAMINGHVKQKNYREGI-DLFRKMRDSGVEVNE 230
G K + + + +++++ A + +Q I +M G+++
Sbjct: 177 RQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQA 236
Query: 231 LTLVSVLSACANLGASE 247
L +LS +
Sbjct: 237 LFTAVLLSEEDRATVLK 253
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.6 bits (138), Expect = 7e-09
Identities = 71/563 (12%), Positives = 173/563 (30%), Gaps = 138/563 (24%)
Query: 21 HKNSNTATKSHHH-----LPLLQK-------CTHLVQF-KQVHAQIIKASFDNRTIS--- 64
H + + T H + L + + C + K + + K D+ +S
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSI---LSKEEIDHIIMSKDA 60
Query: 65 DTQLAKLIESLVNSSQIAYAHLVFNQIINPS-TFAFNTVIRGYAEAGLGHRGIQLYTQMI 123
+ +L +L++ + V +++ + F + + + + R +
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFV-EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 124 GNGLDPDSFT-YPI--------LLKACGDLRQVKGV--H--------SLVVKSKDFNSVI 164
N D F Y + L +A +LR K V + + V
Sbjct: 120 YN--DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177
Query: 165 HSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDS 224
+ I F+ N + S + + + + + ++ + N+ D ++
Sbjct: 178 CKMDFKI-FWLNLKNCNSPETVLEML--QKLL--------YQIDPNWTSRSDHSSNIKLR 226
Query: 225 GVEVNELTLVSVLSACANLGASELGKWVHEFVNKNC-IILNDKLGAALTDMYAKCGYIEE 283
+ EL + + +NC ++L + + + +
Sbjct: 227 IHSIQA----------------ELRRLLKSKPYENCLLVLLN-----VQN--------AK 257
Query: 284 ALRVFKI-----VLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMS-------GIKPDD 331
A F + + + + + H + ++ +P D
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Query: 332 VTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEP-NVKHYGCLVDLLCRAR-----LLDE 385
+ + T +I + I RD N KH C D L +L+
Sbjct: 318 LPREVLTTNPRRLSII--AESI-----RDGLATWDNWKHVNC--DKLTTIIESSLNVLEP 368
Query: 386 A-----YE---VIR---NMPMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPF 434
A ++ V ++P +++W ++ + V + ++ L++ +P
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM------VVVNKLHKYSLVEKQP- 421
Query: 435 NDGNYVLMSNIYAAKAQWDDAGKM-RRLMKERNIVK---NPGCSVIEINDVVHEFMVGDG 490
+ + S K + ++ + R ++ NI K + ++ + + G
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI---G 478
Query: 491 RHPCS---EEIYSMLEYVAISLR 510
H + E ++ V + R
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDFR 501
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 519 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.91 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.9 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.88 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.87 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.84 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.83 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.83 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.82 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.8 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.79 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.79 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.79 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.78 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.78 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.78 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.77 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.76 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.76 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.76 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.75 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.74 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.72 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.72 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.7 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.68 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.68 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.68 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.66 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.65 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.64 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.63 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.59 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.59 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.58 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.58 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.57 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.57 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.57 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.56 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.56 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.56 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.56 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.56 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.55 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.54 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.54 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.53 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.53 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.52 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.51 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.5 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.5 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.5 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.46 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.46 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.44 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.44 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.43 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.42 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.42 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.39 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.38 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.38 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.38 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.37 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.36 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.35 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.32 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.3 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.3 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.3 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.28 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.27 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.23 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.22 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.19 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.17 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.17 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.12 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.11 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.1 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.09 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.09 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.08 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.06 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.05 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.05 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.05 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.04 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.97 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.96 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.96 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.95 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.94 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.93 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.92 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.9 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.9 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.88 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.86 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.86 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.86 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.85 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.84 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.82 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.82 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.8 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.79 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.78 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.77 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.77 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.76 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.76 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.76 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.71 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.71 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.7 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.68 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.66 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.66 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.65 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.65 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.64 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.62 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.62 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.61 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.6 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.58 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.55 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.53 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.53 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.53 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.51 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.51 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.5 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.5 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.5 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.5 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.5 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.49 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.48 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.48 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.48 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.48 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.48 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.47 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.46 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.46 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.46 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.45 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.44 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.4 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.37 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.36 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.33 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.33 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.32 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.31 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.3 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.3 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.3 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.29 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.28 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.27 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.27 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.25 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.23 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.22 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.21 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.21 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.2 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.2 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.19 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.18 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.18 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.17 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.16 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.16 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.09 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.05 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.01 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.01 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.99 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.96 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.88 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.88 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.85 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.84 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.81 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.72 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.7 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.64 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.62 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.53 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.45 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.41 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 97.4 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 97.33 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.3 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.28 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.22 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.2 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.2 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.02 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.01 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.0 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.96 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.86 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.83 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.82 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.8 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.75 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.73 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.53 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.38 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.32 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.18 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.16 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.12 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.86 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.63 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.61 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.51 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 95.45 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.32 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 94.59 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.47 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.46 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 93.53 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.34 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 93.04 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.01 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 92.97 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 92.26 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 92.12 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 92.12 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 91.44 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 91.21 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 91.19 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 90.8 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 90.4 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 89.12 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 88.75 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 88.61 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 88.52 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 87.79 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 87.52 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 87.44 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 87.37 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 87.04 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 85.54 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 85.28 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 85.19 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 84.92 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 82.97 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 82.02 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 81.16 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-37 Score=313.26 Aligned_cols=427 Identities=10% Similarity=-0.008 Sum_probs=366.8
Q ss_pred CCcccHHHHHHhcc---CchHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcC--CCCCcchHHHH
Q 048578 28 TKSHHHLPLLQKCT---HLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQI--INPSTFAFNTV 102 (519)
Q Consensus 28 p~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~l 102 (519)
|+...|+.++..+. ....+..+++.+.+ ..|+..++..++..|.+. |++++|..+|+.+ ..++..+++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~l 156 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCT---GDYARAKCLLTKEDLYNRSSACRYLA 156 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHT---TCHHHHHHHHHHTCGGGTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHc---CcHHHHHHHHHHHhccccchhHHHHH
Confidence 56667777877764 45555777777774 456778889999999999 9999999999998 56888999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC---------------CCCCCcchHHHHHHHHcCccchHHHHHHHHHhCCCCCc-hhH
Q 048578 103 IRGYAEAGLGHRGIQLYTQMIGN---------------GLDPDSFTYPILLKACGDLRQVKGVHSLVVKSKDFNSV-IHS 166 (519)
Q Consensus 103 l~~~~~~g~~~~a~~~~~~m~~~---------------g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 166 (519)
+.+|.+.|++++|+++|+++... |.+++..+|+.+..++.+.|+.+++.+.+.+.....|+ ...
T Consensus 157 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 236 (597)
T 2xpi_A 157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEA 236 (597)
T ss_dssp HHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHH
Confidence 99999999999999999953221 22345779999999999999966666665543222332 222
Q ss_pred H--------------------------------------HHHHHHHHhcCChHHHHHHHhcCCC--CchhHHHHHHHHHH
Q 048578 167 L--------------------------------------TRLITFYCNFGDVKSAQLLFDQMTE--KNVVTWTAMINGHV 206 (519)
Q Consensus 167 ~--------------------------------------~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~ 206 (519)
+ +.++..|.+.|++++|.++|+++.+ ++..+|+.++.+|.
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLF 316 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Confidence 2 2235567788999999999999988 78999999999999
Q ss_pred HcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHH
Q 048578 207 KQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALR 286 (519)
Q Consensus 207 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 286 (519)
+.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|..+++.+.+.. +.+..++..++.+|.+.|++++|.+
T Consensus 317 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 394 (597)
T 2xpi_A 317 VRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARR 394 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHH
Confidence 9999999999999999875 3377789999999999999999999999999765 6678899999999999999999999
Q ss_pred HHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCC
Q 048578 287 VFKIVLE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKV 363 (519)
Q Consensus 287 ~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 363 (519)
+|+++.+ .+..+|+.++.++.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+. .
T Consensus 395 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~ 471 (597)
T 2xpi_A 395 YFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--F 471 (597)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 9998853 467899999999999999999999999999864 557789999999999999999999999999883 4
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC--HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC
Q 048578 364 EPNVKHYGCLVDLLCRARLLDEAYEVIRNM-------PMEPN--AVLWGSLLTACASADDGANVELAEIAMERLIKLEPF 434 (519)
Q Consensus 364 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~~~p~--~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (519)
+.+..+|+.++.+|.+.|++++|.++|+++ +..|+ ..+|..+..+|.. .|++++|.+.++++.+.+|+
T Consensus 472 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~p~ 548 (597)
T 2xpi_A 472 QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK---LKMYDAAIDALNQGLLLSTN 548 (597)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHSSC
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH---hcCHHHHHHHHHHHHHhCCC
Confidence 557889999999999999999999999988 45787 7899999999999 99999999999999999999
Q ss_pred CCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 435 NDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 435 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
++.+|..++.+|.+.|++++|.+.++++.+.+.
T Consensus 549 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 549 DANVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999987543
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=289.14 Aligned_cols=409 Identities=8% Similarity=-0.027 Sum_probs=349.1
Q ss_pred CCCCcccHHHHHHhccCch---HHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCCCC--------
Q 048578 26 TATKSHHHLPLLQKCTHLV---QFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIINP-------- 94 (519)
Q Consensus 26 ~~p~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~~-------- 94 (519)
..|+..++..+..++...+ .+..+++.+. ..++++.+++.++..|.+. |++++|.++|+++.+.
T Consensus 113 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~ 187 (597)
T 2xpi_A 113 ITGNPNDAFWLAQVYCCTGDYARAKCLLTKED--LYNRSSACRYLAAFCLVKL---YDWQGALNLLGETNPFRKDEKNAN 187 (597)
T ss_dssp HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTC--GGGTCHHHHHHHHHHHHHT---TCHHHHHHHHCSSCTTC-------
T ss_pred hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHh--ccccchhHHHHHHHHHHHH---hhHHHHHHHHhccCCccccccccc
Confidence 3466677777777765444 4455555443 3478899999999999999 9999999999975443
Q ss_pred -----------CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcc-hHHHH-------------------------
Q 048578 95 -----------STFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSF-TYPIL------------------------- 137 (519)
Q Consensus 95 -----------~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~l------------------------- 137 (519)
+..+|+.++.+|.+.|++++|+++|++|.+.+ |+.. .+..+
T Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 265 (597)
T 2xpi_A 188 KLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSK 265 (597)
T ss_dssp ---CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHG
T ss_pred cccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCccccc
Confidence 37899999999999999999999999999854 4432 22222
Q ss_pred -------------HHHHcCccchHHHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CchhHHHHH
Q 048578 138 -------------LKACGDLRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTE---KNVVTWTAM 201 (519)
Q Consensus 138 -------------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 201 (519)
+..|.+.|+.+++.+.+.+....+++..+++.++.+|.+.|++++|..+|+++.+ .+..+|+.+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 345 (597)
T 2xpi_A 266 EDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLH 345 (597)
T ss_dssp GGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHH
T ss_pred chHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHH
Confidence 3445566677778888877665568899999999999999999999999999864 467789999
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCH
Q 048578 202 INGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYI 281 (519)
Q Consensus 202 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 281 (519)
+.++.+.|++++|.++++++.+.. +.+..++..++..|.+.|++++|..+|+.+.+.. +.+..+++.++.+|.+.|++
T Consensus 346 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 423 (597)
T 2xpi_A 346 LASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEH 423 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 999999999999999999998653 4578899999999999999999999999999865 55788999999999999999
Q ss_pred HHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcH
Q 048578 282 EEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMR 358 (519)
Q Consensus 282 ~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 358 (519)
++|+++|+++.+ .+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|..++.+|.+.|++++|.++|+++.
T Consensus 424 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 502 (597)
T 2xpi_A 424 DQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNAL 502 (597)
T ss_dssp HHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999998743 477899999999999999999999999998754 4578899999999999999999999999998
Q ss_pred Hhc---CCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhh
Q 048578 359 RDY---KVEPN--VKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKL 431 (519)
Q Consensus 359 ~~~---~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~ 431 (519)
+.. +..|+ ..+|..++.+|.+.|++++|.+.++++ ...| +..+|..+..+|.. .|++++|.+.++++++.
T Consensus 503 ~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 503 LLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLH---KKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHH
T ss_pred HhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH---hCCHHHHHHHHHHHHhc
Confidence 732 55677 789999999999999999999999998 4445 78899999999999 99999999999999999
Q ss_pred CCCCCchHHHHHHHHH
Q 048578 432 EPFNDGNYVLMSNIYA 447 (519)
Q Consensus 432 ~p~~~~~~~~l~~~~~ 447 (519)
+|+++.++..++.+|.
T Consensus 580 ~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 580 SPNEIMASDLLKRALE 595 (597)
T ss_dssp CTTCHHHHHHHHHTTC
T ss_pred CCCChHHHHHHHHHHh
Confidence 9999999999988774
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-26 Score=221.25 Aligned_cols=350 Identities=11% Similarity=0.004 Sum_probs=229.7
Q ss_pred HHHHhhcCCCChHHHHHHHhcCC--CC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccc
Q 048578 70 KLIESLVNSSQIAYAHLVFNQII--NP-STFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQ 146 (519)
Q Consensus 70 ~~~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 146 (519)
..+.+. |++++|.+.++.+. .| +...+..+...+...|++++|...++...+.
T Consensus 7 ~~~~~~---g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~--------------------- 62 (388)
T 1w3b_A 7 HREYQA---GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--------------------- 62 (388)
T ss_dssp HHHHHH---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------
T ss_pred HHHHHC---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---------------------
Confidence 344455 77777777776652 23 3345555566666777777777777666552
Q ss_pred hHHHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-chhHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 048578 147 VKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTE--K-NVVTWTAMINGHVKQKNYREGIDLFRKMRD 223 (519)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 223 (519)
.+.+...+..+..+|.+.|++++|...|+++.+ | +..+|..+..++.+.|++++|.+.|+++.+
T Consensus 63 -------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 129 (388)
T 1w3b_A 63 -------------NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ 129 (388)
T ss_dssp -------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH
T ss_pred -------------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 233455666666677777777777777776643 3 344567777777777777777777777766
Q ss_pred CCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHH
Q 048578 224 SGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLE---KNVCTWN 300 (519)
Q Consensus 224 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~ 300 (519)
.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+..++...|++++|...|+++.+ .+...|.
T Consensus 130 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 207 (388)
T 1w3b_A 130 YN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYI 207 (388)
T ss_dssp HC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 43 1233445556666666777777777777776654 44556667777777777777777777776643 2445666
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhc
Q 048578 301 SIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRA 380 (519)
Q Consensus 301 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 380 (519)
.+...+...|++++|...+++..... +.+..++..+..++...|++++|...|+++.+ ..+.+..+|..++.++.+.
T Consensus 208 ~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~ 284 (388)
T 1w3b_A 208 NLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEK 284 (388)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHc
Confidence 66777777777777777777766532 22355667777777777777777777777766 2233456677777777777
Q ss_pred CChHHHHHHHHhC-CCC-CCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHH
Q 048578 381 RLLDEAYEVIRNM-PME-PNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKM 458 (519)
Q Consensus 381 ~~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 458 (519)
|++++|.+.|+++ ... .+..++..+...+.. .|++++|...++++++..|+++.++..++.+|.+.|++++|.+.
T Consensus 285 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 361 (388)
T 1w3b_A 285 GSVAEAEDCYNTALRLCPTHADSLNNLANIKRE---QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 361 (388)
T ss_dssp SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT---TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777776 222 355666677777776 77777777777777777777777777777777777777777777
Q ss_pred HHHHHh
Q 048578 459 RRLMKE 464 (519)
Q Consensus 459 ~~~m~~ 464 (519)
++++.+
T Consensus 362 ~~~a~~ 367 (388)
T 1w3b_A 362 YKEAIR 367 (388)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 777765
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=8.8e-26 Score=217.64 Aligned_cols=367 Identities=11% Similarity=0.057 Sum_probs=310.9
Q ss_pred hccCchHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChhHH
Q 048578 39 KCTHLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQII---NPSTFAFNTVIRGYAEAGLGHRG 115 (519)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a 115 (519)
..++...+.+.+..+.+.. |.+...+..+...+... |++++|...++... +.+..+|..+...+.+.|++++|
T Consensus 11 ~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~---~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 11 QAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQC---RRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 3466777777777777664 44556677777888888 99999999998773 35667899999999999999999
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--C
Q 048578 116 IQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTE--K 193 (519)
Q Consensus 116 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~ 193 (519)
+..|+++.+. .+.+...+..+..++.+.|++++|...|+++.+ |
T Consensus 87 ~~~~~~al~~----------------------------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 132 (388)
T 1w3b_A 87 IEHYRHALRL----------------------------------KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP 132 (388)
T ss_dssp HHHHHHHHHH----------------------------------CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHc----------------------------------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999999872 123345677788888999999999999988765 4
Q ss_pred -chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHH
Q 048578 194 -NVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALT 272 (519)
Q Consensus 194 -~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 272 (519)
+...+..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|+++.|...++++.+.+ +.+...+..+.
T Consensus 133 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 210 (388)
T 1w3b_A 133 DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLG 210 (388)
T ss_dssp TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 34567788888999999999999999998763 3356788889999999999999999999999876 55677888999
Q ss_pred HHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHH
Q 048578 273 DMYAKCGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEK 349 (519)
Q Consensus 273 ~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 349 (519)
.++...|++++|...|++..+ .+..++..+...+...|++++|...|+++.+.+ +.+..++..+..++.+.|++++
T Consensus 211 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 289 (388)
T 1w3b_A 211 NVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAE 289 (388)
T ss_dssp HHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999987743 357789999999999999999999999999853 3356789999999999999999
Q ss_pred HHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHH
Q 048578 350 GKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMER 427 (519)
Q Consensus 350 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~ 427 (519)
|...|+++.+ ..+.+..++..++..+...|++++|.+.++++ ...| +..++..+...+.. .|++++|...+++
T Consensus 290 A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~ 364 (388)
T 1w3b_A 290 AEDCYNTALR--LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ---QGKLQEALMHYKE 364 (388)
T ss_dssp HHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHT---TTCCHHHHHHHHH
T ss_pred HHHHHHHHHh--hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH---cCCHHHHHHHHHH
Confidence 9999999998 35677889999999999999999999999998 6566 46789999999999 9999999999999
Q ss_pred HHhhCCCCCchHHHHHHHHHhcCC
Q 048578 428 LIKLEPFNDGNYVLMSNIYAAKAQ 451 (519)
Q Consensus 428 ~~~~~p~~~~~~~~l~~~~~~~g~ 451 (519)
+++..|.++.+|..++.++...|+
T Consensus 365 a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 365 AIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999999999999999887764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-28 Score=239.10 Aligned_cols=183 Identities=14% Similarity=0.159 Sum_probs=161.9
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC---------hHHHHHHHHHHHHcCCCcchh
Q 048578 196 VTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGA---------SELGKWVHEFVNKNCIILNDK 266 (519)
Q Consensus 196 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 266 (519)
..++.+|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.+. ++.|..+|++|...|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 45778889999999999999999999988999999999999998876654 577888999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcC----CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 048578 267 LGAALTDMYAKCGYIEEALRVFKIVL----EKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACS 342 (519)
Q Consensus 267 ~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 342 (519)
+|+++|.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999998884 46888999999999999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHh
Q 048578 343 HAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCR 379 (519)
Q Consensus 343 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (519)
+.|++++|.++|++|.+ .+..|+..||+.++..|+.
T Consensus 187 ~~g~~d~A~~ll~~Mr~-~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRD-LVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCHHHHHHHHHHHHH-HTSSBCHHHHHHHHHHHHS
T ss_pred hCCCHHHHHHHHHHHHH-hCCCcCHHHHHHHHHHHhc
Confidence 99999999999999988 5899999999999888875
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-27 Score=233.30 Aligned_cols=199 Identities=17% Similarity=0.167 Sum_probs=172.7
Q ss_pred hHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCC---------H
Q 048578 212 REGIDLFRKMRDSGVEVNE-LTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGY---------I 281 (519)
Q Consensus 212 ~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~ 281 (519)
..+..+.+++.+.+..+.+ ..++.+|++|++.|++++|..+|++|.+.|+.||..+|++||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 4455666777777766554 46888999999999999999999999999999999999999999987664 7
Q ss_pred HHHHHHHhhcC----CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHc
Q 048578 282 EEALRVFKIVL----EKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNM 357 (519)
Q Consensus 282 ~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 357 (519)
++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 89999999984 57999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC---CCCCCHHHHHHHHHHHcc
Q 048578 358 RRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM---PMEPNAVLWGSLLTACAS 411 (519)
Q Consensus 358 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~ 411 (519)
.+ .|+.||..+|+.||.+|++.|++++|.++|++| +..|+..||+.++..|..
T Consensus 167 ~~-~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 167 VE-SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HH-TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred Hh-cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 98 699999999999999999999999999999999 899999999999998765
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-22 Score=201.72 Aligned_cols=395 Identities=10% Similarity=-0.042 Sum_probs=297.1
Q ss_pred hHHHHHHHHHhhcCCCChHHHHHHHhcCC--CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHH
Q 048578 64 SDTQLAKLIESLVNSSQIAYAHLVFNQII--NPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKAC 141 (519)
Q Consensus 64 ~~~~ll~~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 141 (519)
.+..+...+.+. |++++|...|+++. .|+..+|..+..++.+.|++++|+..++++.+.+ +.+...+..+...+
T Consensus 8 ~~~~~g~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 8 ALKDKGNQFFRN---KKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHT---SCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---ccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 445566677777 88888888888874 3778888888888888889999988888888753 22345777777788
Q ss_pred cCccchHHHHHHHHHhCCCCC-chhHHHHHHHHHHhcCChHHHHHHH---------------------------------
Q 048578 142 GDLRQVKGVHSLVVKSKDFNS-VIHSLTRLITFYCNFGDVKSAQLLF--------------------------------- 187 (519)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~--------------------------------- 187 (519)
...|+.+++...+.+.....| +......++..+........+.+.+
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 888886666655544322222 3333333333333322222222111
Q ss_pred -----hcCCC---------C-chhHHHHHHHHHHH---cCChhHHHHHHHHHHh-----CCCC--------CCHHHHHHH
Q 048578 188 -----DQMTE---------K-NVVTWTAMINGHVK---QKNYREGIDLFRKMRD-----SGVE--------VNELTLVSV 236 (519)
Q Consensus 188 -----~~~~~---------~-~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~-----~~~~--------~~~~~~~~l 236 (519)
..... | +...+......+.. .|++++|...|+++.+ ..-. .+..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 11110 1 13445555555554 8999999999999987 3111 234577788
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChH
Q 048578 237 LSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGE 313 (519)
Q Consensus 237 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~ 313 (519)
...+...|+++.|...++.+.+.+.. ...+..+..++...|++++|...++++.+ .+..++..+...+...|+++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHH
Confidence 88899999999999999999988643 88889999999999999999999998855 36678899999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 048578 314 EAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM 393 (519)
Q Consensus 314 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 393 (519)
+|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...++++
T Consensus 322 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 322 QAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp HHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999998864 335678899999999999999999999999883 3446678899999999999999999999887
Q ss_pred -CC---CCC----HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048578 394 -PM---EPN----AVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKER 465 (519)
Q Consensus 394 -~~---~p~----~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 465 (519)
.. .++ ...+..+...+......|++++|...++++++..|.++.++..++.+|.+.|++++|.+.+++..+.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 22 222 3366666666654111478999999999999999999999999999999999999999999999875
Q ss_pred CC
Q 048578 466 NI 467 (519)
Q Consensus 466 ~~ 467 (519)
+.
T Consensus 479 ~~ 480 (514)
T 2gw1_A 479 AR 480 (514)
T ss_dssp CS
T ss_pred cc
Confidence 54
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.8e-22 Score=196.19 Aligned_cols=326 Identities=13% Similarity=0.048 Sum_probs=262.1
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHHHHHhCCCCCchhHHHHHHHHH
Q 048578 95 STFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKSKDFNSVIHSLTRLITFY 174 (519)
Q Consensus 95 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 174 (519)
+...|..+...+.+.|++++|+.+|+++.+. .+.+...+..+..+|
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----------------------------------~p~~~~~~~~l~~~~ 70 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG----------------------------------DPDNYIAYYRRATVF 70 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------------CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------------------------------CCccHHHHHHHHHHH
Confidence 4567888888999999999999999998863 233456677777888
Q ss_pred HhcCChHHHHHHHhcCCC---CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH----HHHHHH-----------
Q 048578 175 CNFGDVKSAQLLFDQMTE---KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNE----LTLVSV----------- 236 (519)
Q Consensus 175 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~l----------- 236 (519)
...|++++|...|+++.+ .+..+|..+..+|.+.|++++|.+.|+++.+.. |+. ..+..+
T Consensus 71 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~ 148 (450)
T 2y4t_A 71 LAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRS 148 (450)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHH
Confidence 888888888888888765 346678888888999999999999998888753 433 444444
Q ss_pred -HHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCCh
Q 048578 237 -LSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCG 312 (519)
Q Consensus 237 -l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~ 312 (519)
...+...|+++.|...++.+.+.. +.+..++..+..+|.+.|++++|.++|+++.+ .+..+|..+...+...|++
T Consensus 149 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 227 (450)
T 2y4t_A 149 QALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDH 227 (450)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 344788899999999999998875 56778888999999999999999999988854 4678899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHH------------HHHHhccCcHHHHHHHHHHcHHhcCCCCC--hhHHHHHHHHH
Q 048578 313 EEAVKMFWQMQMSGIKPDD-VTLIAV------------LTACSHAGLIEKGKEIFYNMRRDYKVEPN--VKHYGCLVDLL 377 (519)
Q Consensus 313 ~~a~~~~~~m~~~g~~p~~-~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~ 377 (519)
++|...|+++.+. .|+. ..+..+ ..+|...|++++|...|+++.+.....|. ...|..++.++
T Consensus 228 ~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~ 305 (450)
T 2y4t_A 228 ELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCF 305 (450)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 9999999999864 4443 344444 78899999999999999999873211111 45788899999
Q ss_pred HhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHH----------
Q 048578 378 CRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNI---------- 445 (519)
Q Consensus 378 ~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~---------- 445 (519)
.+.|++++|+..++++ ...| +...|..+..+|.. .|++++|...++++++..|.++.++..++.+
T Consensus 306 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 382 (450)
T 2y4t_A 306 SKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLI---EEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKR 382 (450)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH---hcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccch
Confidence 9999999999999998 4455 67889999999999 9999999999999999999999999998844
Q ss_pred --HHhcC-----CchHHHHHHHHH
Q 048578 446 --YAAKA-----QWDDAGKMRRLM 462 (519)
Q Consensus 446 --~~~~g-----~~~~A~~~~~~m 462 (519)
|...| +.+++.+.++++
T Consensus 383 ~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 383 DYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp CSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred hHHHHhCCCccCCHHHHHHHHHHH
Confidence 55555 556777777763
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=6.7e-22 Score=194.38 Aligned_cols=299 Identities=11% Similarity=0.015 Sum_probs=257.9
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048578 161 NSVIHSLTRLITFYCNFGDVKSAQLLFDQMTE---KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVL 237 (519)
Q Consensus 161 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 237 (519)
+.+...+..++..|.+.|++++|..+|+++.+ .+..+|..+..++...|++++|...|+++.+.+ +.+...+..+.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 45677889999999999999999999998865 467889999999999999999999999998875 34578889999
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCcch---hHHHHH------------HHHHHhcCCHHHHHHHHhhcCC---CChhhH
Q 048578 238 SACANLGASELGKWVHEFVNKNCIILND---KLGAAL------------TDMYAKCGYIEEALRVFKIVLE---KNVCTW 299 (519)
Q Consensus 238 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~---~~~~~~ 299 (519)
.++.+.|+++.|...++.+.+.+ +.+. ..+..+ ...+...|++++|...|+++.+ .+...+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 180 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELR 180 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 99999999999999999999865 3344 555544 4458999999999999998854 467889
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHH------
Q 048578 300 NSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCL------ 373 (519)
Q Consensus 300 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l------ 373 (519)
..+...+.+.|++++|..+|+++.+.. +.+..++..+..++...|++++|...|+++.+. .+.+...+..+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKL 257 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHH
Confidence 999999999999999999999998753 456789999999999999999999999999873 33344555544
Q ss_pred ------HHHHHhcCChHHHHHHHHhC-CCCCC-----HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHH
Q 048578 374 ------VDLLCRARLLDEAYEVIRNM-PMEPN-----AVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVL 441 (519)
Q Consensus 374 ------~~~~~~~~~~~~A~~~~~~~-~~~p~-----~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 441 (519)
+..+...|++++|.+.|+++ .+.|+ ...+..+...+.. .|++++|...++++++..|+++.+|..
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~a~~~~p~~~~~~~~ 334 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSK---DEKPVEAIRVCSEVLQMEPDNVNALKD 334 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHT---TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 88999999999999999998 55565 3477888888998 999999999999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 442 MSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 442 l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
++.+|...|++++|...+++..+...
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al~~~p 360 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQEHNE 360 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 99999999999999999999988543
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-21 Score=196.08 Aligned_cols=391 Identities=8% Similarity=-0.081 Sum_probs=308.4
Q ss_pred hccCchHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChhHH
Q 048578 39 KCTHLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQII---NPSTFAFNTVIRGYAEAGLGHRG 115 (519)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a 115 (519)
...+...+...++.+.+.. |++.++..+...|.+. |++++|...|+.+. +.+..+|..+..++.+.|++++|
T Consensus 18 ~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 92 (514)
T 2gw1_A 18 RNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSV---GDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADA 92 (514)
T ss_dssp HTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHH---hhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHH
Confidence 3467777888899888876 6889999999999999 99999999999874 34567899999999999999999
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHcCccchHH--------------------------------------HHHHHHHh
Q 048578 116 IQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKG--------------------------------------VHSLVVKS 157 (519)
Q Consensus 116 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~--------------------------------------~~~~~~~~ 157 (519)
+..|+++.+.+. ++......++..+........ +...+...
T Consensus 93 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (514)
T 2gw1_A 93 MFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIF 171 (514)
T ss_dssp HHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTS
T ss_pred HHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhc
Confidence 999999998753 333343333333322111110 00111000
Q ss_pred CC--------CCCchhHHHHHHHHHHh---cCChHHHHHHHhcCCC----------------C-chhHHHHHHHHHHHcC
Q 048578 158 KD--------FNSVIHSLTRLITFYCN---FGDVKSAQLLFDQMTE----------------K-NVVTWTAMINGHVKQK 209 (519)
Q Consensus 158 ~~--------~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~----------------~-~~~~~~~li~~~~~~~ 209 (519)
.. .+.+...+......+.. .|++++|..+|+++.+ | +..+|..+...+...|
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (514)
T 2gw1_A 172 KPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKN 251 (514)
T ss_dssp CCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCC
Confidence 00 01124444444454554 8999999999988754 1 3457888999999999
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHh
Q 048578 210 NYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFK 289 (519)
Q Consensus 210 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 289 (519)
++++|...|+++.+... +...+..+..++...|+++.|...++.+.+.. +.+..++..+..+|...|++++|...|+
T Consensus 252 ~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 328 (514)
T 2gw1_A 252 DPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFD 328 (514)
T ss_dssp CHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 99999999999988753 37888889999999999999999999998875 5577889999999999999999999999
Q ss_pred hcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCC
Q 048578 290 IVLE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPN 366 (519)
Q Consensus 290 ~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 366 (519)
++.+ .+...+..+...+...|++++|...++++.+.. +.+..++..+..++...|++++|...++++.+...-.++
T Consensus 329 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 407 (514)
T 2gw1_A 329 KAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDG 407 (514)
T ss_dssp HHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccch
Confidence 8743 366788999999999999999999999998753 335678899999999999999999999998773222222
Q ss_pred ----hhHHHHHHHHHHh---cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCc
Q 048578 367 ----VKHYGCLVDLLCR---ARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDG 437 (519)
Q Consensus 367 ----~~~~~~l~~~~~~---~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 437 (519)
...+..+...+.. .|++++|...++++ ...| +..++..+...+.. .|++++|...++++++.+|.++.
T Consensus 408 ~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~a~~~~~~~~~ 484 (514)
T 2gw1_A 408 IYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQ---QEDIDEAITLFEESADLARTMEE 484 (514)
T ss_dssp CSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH---hcCHHHHHHHHHHHHHhccccHH
Confidence 3488999999999 99999999999998 4445 56788888889999 99999999999999999999877
Q ss_pred hHHHH
Q 048578 438 NYVLM 442 (519)
Q Consensus 438 ~~~~l 442 (519)
.+..+
T Consensus 485 ~~~~~ 489 (514)
T 2gw1_A 485 KLQAI 489 (514)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77665
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.90 E-value=7.9e-21 Score=191.20 Aligned_cols=410 Identities=9% Similarity=-0.038 Sum_probs=275.4
Q ss_pred cCchHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChhHHHH
Q 048578 41 THLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQII---NPSTFAFNTVIRGYAEAGLGHRGIQ 117 (519)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~ 117 (519)
.+...+...++.+.+.. +.++.++..+...|.+. |++++|.+.|+++. +.+..+|..+..++...|++++|+.
T Consensus 39 g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 114 (537)
T 3fp2_A 39 KNFNEAIKYYQYAIELD-PNEPVFYSNISACYIST---GDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMF 114 (537)
T ss_dssp TCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred ccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 56666677777777664 44667777778888887 88888888887763 2455677777788888888888888
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHHHHHhCCCC----CchhHHHHHHHHHHhcCChHHHHHHHhcCCCC
Q 048578 118 LYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKSKDFN----SVIHSLTRLITFYCNFGDVKSAQLLFDQMTEK 193 (519)
Q Consensus 118 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 193 (519)
.|+ .... .|+.... .+..+...+...+....+.+.-... +........+..+....+.+.+...+......
T Consensus 115 ~~~-~~~~--~~~~~~~--~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (537)
T 3fp2_A 115 DLS-VLSL--NGDFDGA--SIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNY 189 (537)
T ss_dssp HHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSS
T ss_pred HHH-HHhc--CCCCChH--HHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhcccc
Confidence 885 3322 2222111 1111111222223333332221111 11111223334455566666666666555543
Q ss_pred chh---HHHHHHHHHH--------HcCChhHHHHHHHHHHhCCCCCC------HHHHHHHHHHHhccCChHHHHHHHHHH
Q 048578 194 NVV---TWTAMINGHV--------KQKNYREGIDLFRKMRDSGVEVN------ELTLVSVLSACANLGASELGKWVHEFV 256 (519)
Q Consensus 194 ~~~---~~~~li~~~~--------~~~~~~~a~~~~~~m~~~~~~~~------~~~~~~ll~~~~~~~~~~~a~~~~~~~ 256 (519)
+.. ....+...+. ..|++++|..+|+++.+...... ..++..+...+...|+++.|...++.+
T Consensus 190 ~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~ 269 (537)
T 3fp2_A 190 DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQES 269 (537)
T ss_dssp CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 322 2333332222 22478888888888887532211 224666667778888999999999998
Q ss_pred HHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 048578 257 NKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVT 333 (519)
Q Consensus 257 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 333 (519)
.+.. |+...+..+...+...|++++|...|+++.+ .+..++..+...+...|++++|...++++.+.. +.+...
T Consensus 270 ~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~ 346 (537)
T 3fp2_A 270 INLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYP 346 (537)
T ss_dssp HHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHH
T ss_pred HhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 8875 3477888888889999999999999888743 356788888889999999999999999988753 334568
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC---C----CCHHHHHHH
Q 048578 334 LIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PM---E----PNAVLWGSL 405 (519)
Q Consensus 334 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~---~----p~~~~~~~l 405 (519)
+..+..++...|++++|...++++.+. .+.+...+..+...+...|++++|.+.|+++ .. . .....+...
T Consensus 347 ~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 424 (537)
T 3fp2_A 347 YIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGK 424 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHH
Confidence 888888999999999999999998873 3455678888899999999999999998886 11 1 122223344
Q ss_pred HHHHccccCC----------CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 406 LTACASADDG----------ANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 406 l~~~~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
...+.. . |++++|...++++++.+|.++.++..++.+|.+.|++++|.+.+++..+...
T Consensus 425 a~~~~~---~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 425 ATILAR---QSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp HHHHHH---HHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHH---HhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 445555 5 8899999999999999999899999999999999999999999999877554
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-19 Score=172.17 Aligned_cols=296 Identities=11% Similarity=0.004 Sum_probs=246.8
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCCC---CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048578 163 VIHSLTRLITFYCNFGDVKSAQLLFDQMTE---KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSA 239 (519)
Q Consensus 163 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 239 (519)
++..+..+...+...|++++|...|+++.+ .+..+|..+..++...|++++|...|+++.+.. +.+...+..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 345677788889999999999999998865 456788899999999999999999999998764 3356788889999
Q ss_pred HhccCChHHHHHHHHHHHHcCCC---cchhHHHHH------------HHHHHhcCCHHHHHHHHhhcCC---CChhhHHH
Q 048578 240 CANLGASELGKWVHEFVNKNCII---LNDKLGAAL------------TDMYAKCGYIEEALRVFKIVLE---KNVCTWNS 301 (519)
Q Consensus 240 ~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ 301 (519)
+...|+++.|...++.+.+.. + .+...+..+ ...+...|++++|...++++.+ .+...+..
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 159 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELREL 159 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHH
Confidence 999999999999999998865 3 344555444 5889999999999999998754 46778889
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHH----------
Q 048578 302 IIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYG---------- 371 (519)
Q Consensus 302 l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---------- 371 (519)
+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...|++..+. .+.+...+.
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHH
Confidence 9999999999999999999998763 556779999999999999999999999999873 233333333
Q ss_pred --HHHHHHHhcCChHHHHHHHHhC-CCCCCHH-----HHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHH
Q 048578 372 --CLVDLLCRARLLDEAYEVIRNM-PMEPNAV-----LWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMS 443 (519)
Q Consensus 372 --~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~-----~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 443 (519)
.+...+.+.|++++|...++++ ...|+.. .+..+...+.. .|++++|...++++++.+|.++.++..++
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 313 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSK---DEKPVEAIRICSEVLQMEPDNVNALKDRA 313 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 2367799999999999999988 4445432 34456677888 99999999999999999999999999999
Q ss_pred HHHHhcCCchHHHHHHHHHHhCC
Q 048578 444 NIYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
.+|.+.|++++|.+.+++..+..
T Consensus 314 ~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 314 EAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC
Confidence 99999999999999999997743
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-19 Score=171.48 Aligned_cols=314 Identities=11% Similarity=0.014 Sum_probs=249.1
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHHHHHhCCCCCchhHHHHHHHHH
Q 048578 95 STFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKSKDFNSVIHSLTRLITFY 174 (519)
Q Consensus 95 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 174 (519)
|+..+..+...+...|++++|+..|+++.+. .+.+...+..+..++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----------------------------------~p~~~~~~~~~a~~~ 47 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDG----------------------------------DPDNYIAYYRRATVF 47 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------------CTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------------------------------CcccHHHHHHHHHHH
Confidence 3456777888889999999999999988873 233455667777788
Q ss_pred HhcCChHHHHHHHhcCCC--C-chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC--CCHHHHHHH------------H
Q 048578 175 CNFGDVKSAQLLFDQMTE--K-NVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVE--VNELTLVSV------------L 237 (519)
Q Consensus 175 ~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~l------------l 237 (519)
...|++++|...|+++.+ | +...|..+..++...|++++|...|++..+.... .+...+..+ .
T Consensus 48 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 127 (359)
T 3ieg_A 48 LAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQA 127 (359)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888754 3 5667888888889999999999999888875320 133334333 4
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHH
Q 048578 238 SACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEE 314 (519)
Q Consensus 238 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~ 314 (519)
..+...|+++.|...++.+.+.. +.+...+..+..++...|++++|...++++.+ .+..++..+...+...|++++
T Consensus 128 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 206 (359)
T 3ieg_A 128 LDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHEL 206 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 67888999999999999998875 56778888999999999999999999988854 366788889999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHH------------HHHHHHhccCcHHHHHHHHHHcHHhcCCCCCh----hHHHHHHHHHH
Q 048578 315 AVKMFWQMQMSGIKPDDVTLI------------AVLTACSHAGLIEKGKEIFYNMRRDYKVEPNV----KHYGCLVDLLC 378 (519)
Q Consensus 315 a~~~~~~m~~~g~~p~~~~~~------------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~ 378 (519)
|...+++..+.. +.+...+. .+...+...|++++|...++++.+.. +.+. ..+..+..++.
T Consensus 207 A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~ 283 (359)
T 3ieg_A 207 SLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFS 283 (359)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHH
Confidence 999999988743 22233332 23667899999999999999998842 2222 33556888999
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhc
Q 048578 379 RARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAK 449 (519)
Q Consensus 379 ~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 449 (519)
..|++++|.+.+++. ...| +..++..+...+.. .|++++|...++++++.+|+++.++..+..++...
T Consensus 284 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 284 KDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLI---EEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 999999999999998 4455 67788889899999 99999999999999999999999888888776654
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-18 Score=162.01 Aligned_cols=287 Identities=14% Similarity=0.020 Sum_probs=221.1
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 048578 160 FNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTE---KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSV 236 (519)
Q Consensus 160 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 236 (519)
.+.+...+..++..+...|++++|..+|+++.+ .+...+..++.++...|++++|..+++++.+.. +.+...+..+
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 455566777778888888999999998888754 344566677788888899999999998888763 3356677778
Q ss_pred HHHHhccC-ChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCCh
Q 048578 237 LSACANLG-ASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCG 312 (519)
Q Consensus 237 l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~ 312 (519)
...+...| +++.|...++.+.+.. +.+...+..+..++...|++++|...|+++.+ .+...+..+...+...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH
Confidence 88888888 8888988888888765 45667788888888888888888888887743 3456677788888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcC-------CCCChhHHHHHHHHHHhcCChHH
Q 048578 313 EEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYK-------VEPNVKHYGCLVDLLCRARLLDE 385 (519)
Q Consensus 313 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~ 385 (519)
++|...+++..+.. +.+...+..+...+...|++++|...++++.+... .+....++..+..+|...|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 88988888887653 44566888888888888888888888888876321 13345678888888888888888
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH-hcCCc
Q 048578 386 AYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYA-AKAQW 452 (519)
Q Consensus 386 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~ 452 (519)
|...+++. ...| +...+..+...+.. .|++++|...++++++..|+++..+..++.++. ..|+.
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSL---MGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHH---HTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHH---hccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 88888887 3334 45677777778888 888888888888888888888888888888874 55553
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.5e-18 Score=161.19 Aligned_cols=266 Identities=11% Similarity=0.021 Sum_probs=230.6
Q ss_pred CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHH
Q 048578 193 KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALT 272 (519)
Q Consensus 193 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 272 (519)
.+...+..+...+...|++++|.++|+++.+.. +.+...+..++.++...|+++.|..+++.+.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 456677888899999999999999999998764 3345566677788899999999999999999875 56778899999
Q ss_pred HHHHhcC-CHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH
Q 048578 273 DMYAKCG-YIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIE 348 (519)
Q Consensus 273 ~~~~~~g-~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 348 (519)
..+...| ++++|...|+++.+ .+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999998865 356789999999999999999999999998753 334567777999999999999
Q ss_pred HHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC----------CCCHHHHHHHHHHHccccCCCC
Q 048578 349 KGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PM----------EPNAVLWGSLLTACASADDGAN 417 (519)
Q Consensus 349 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~----------~p~~~~~~~ll~~~~~~~~~~~ 417 (519)
+|...++++.+ ..+.+...+..+...+...|++++|...+++. .. ..+..++..+...+.. .|+
T Consensus 177 ~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~ 251 (330)
T 3hym_B 177 LAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK---LKK 251 (330)
T ss_dssp HHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHH---TTC
T ss_pred HHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHH---hcC
Confidence 99999999987 34566788999999999999999999999887 11 2345688889999999 999
Q ss_pred HHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048578 418 VELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 418 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
+++|...++++++..|.++.++..++.+|.+.|++++|.+.+++..+..
T Consensus 252 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 252 YAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999999876543
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.9e-17 Score=166.51 Aligned_cols=412 Identities=10% Similarity=0.016 Sum_probs=294.4
Q ss_pred hhhhhhhhhccccCCCCCCCCCcccHHHHHHhc---cCchHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCChHHH
Q 048578 8 NSQLTHFTNSANSHKNSNTATKSHHHLPLLQKC---THLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYA 84 (519)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A 84 (519)
..++..++.+....+ .+...+..+-..+ .+...+...++.+.+.. +.+..++..+...+... |++++|
T Consensus 42 ~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~---g~~~~A 112 (537)
T 3fp2_A 42 NEAIKYYQYAIELDP-----NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESL---GNFTDA 112 (537)
T ss_dssp C-CHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH---TCHHHH
T ss_pred HHHHHHHHHHHhhCC-----CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHc---CCHHHH
Confidence 345566666655322 1334444333333 67777788888888775 55678888999999999 999999
Q ss_pred HHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC------CCCCCcchHHHHHHHHcCccchHHHHHHHHHhC
Q 048578 85 HLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGN------GLDPDSFTYPILLKACGDLRQVKGVHSLVVKSK 158 (519)
Q Consensus 85 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~------g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~ 158 (519)
...|+.+ ..++...+..+..+...+...+|+..++++... ...|+...... +....+.......+.+..
T Consensus 113 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 187 (537)
T 3fp2_A 113 MFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLAS----FFGIFDSHLEVSSVNTSS 187 (537)
T ss_dssp HHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHH----HHHTSCHHHHHHTSCCCC
T ss_pred HHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHH----HHHhcChHHHHHHHhhcc
Confidence 9999744 333333444456666777778999999999764 12233333332 222333333333332222
Q ss_pred CCCCchh-HHHHHHHHHHh--------cCChHHHHHHHhcCCC--Cc--------hhHHHHHHHHHHHcCChhHHHHHHH
Q 048578 159 DFNSVIH-SLTRLITFYCN--------FGDVKSAQLLFDQMTE--KN--------VVTWTAMINGHVKQKNYREGIDLFR 219 (519)
Q Consensus 159 ~~~~~~~-~~~~l~~~~~~--------~g~~~~A~~~~~~~~~--~~--------~~~~~~li~~~~~~~~~~~a~~~~~ 219 (519)
...+... ....+...+.. .|++++|..+|+.+.+ |+ ..++..+...+...|++++|...|+
T Consensus 188 ~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~ 267 (537)
T 3fp2_A 188 NYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQ 267 (537)
T ss_dssp SSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 2222221 22233322222 2588999999998866 33 2357777788999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCh
Q 048578 220 KMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLE---KNV 296 (519)
Q Consensus 220 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~ 296 (519)
+..+. .|+...+..+...+...|+++.|...++.+.+.. +.+..++..+..++...|++++|...|+++.+ .+.
T Consensus 268 ~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 344 (537)
T 3fp2_A 268 ESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENV 344 (537)
T ss_dssp HHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCS
T ss_pred HHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Confidence 99886 4567888899999999999999999999999876 56788899999999999999999999998854 356
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCC----ChhHHHH
Q 048578 297 CTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEP----NVKHYGC 372 (519)
Q Consensus 297 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~ 372 (519)
..+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...|+++.+...-.+ ....+..
T Consensus 345 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 423 (537)
T 3fp2_A 345 YPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIG 423 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHH
Confidence 789999999999999999999999998753 44566889999999999999999999999876321111 2223455
Q ss_pred HHHHHHhc----------CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHH
Q 048578 373 LVDLLCRA----------RLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYV 440 (519)
Q Consensus 373 l~~~~~~~----------~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 440 (519)
+...+... |++++|...|+++ ...| +...+..+...+.. .|++++|...++++.+..|.++....
T Consensus 424 ~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 424 KATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQ---MEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---hccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 56778888 9999999999998 4445 56788889999999 99999999999999999998765544
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-18 Score=166.38 Aligned_cols=281 Identities=11% Similarity=-0.006 Sum_probs=223.6
Q ss_pred HHhcCChHHHHH-HHhcCCC--C-----chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 048578 174 YCNFGDVKSAQL-LFDQMTE--K-----NVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGA 245 (519)
Q Consensus 174 ~~~~g~~~~A~~-~~~~~~~--~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 245 (519)
+.-.|++++|.. .|++... | +...+..+...+.+.|++++|...|+++.+.. +.+...+..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 344578888888 8876654 1 34567888889999999999999999998864 4467788888888999999
Q ss_pred hHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHH---------------HHHHHH
Q 048578 246 SELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEK---NVCTWNS---------------IIGGLA 307 (519)
Q Consensus 246 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~---------------l~~~~~ 307 (519)
++.|...++.+.+.. +.+..++..+..+|...|++++|.+.++++.+. +...+.. .+..+.
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 999999999998876 567788889999999999999999999887542 2222211 233344
Q ss_pred HcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHH
Q 048578 308 IHGCGEEAVKMFWQMQMSGIK-PDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEA 386 (519)
Q Consensus 308 ~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 386 (519)
..|++++|...++++.+.... ++..++..+..++...|++++|...|+++.+. .+.+...|..++..+...|++++|
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHH
Confidence 889999999999999875311 14789999999999999999999999999883 345678999999999999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCC-----------CchHHHHHHHHHhcCCch
Q 048578 387 YEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFN-----------DGNYVLMSNIYAAKAQWD 453 (519)
Q Consensus 387 ~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~ 453 (519)
...|+++ .+.| +...+..+...+.. .|++++|...++++++..|.+ ..+|..++.+|...|+++
T Consensus 271 ~~~~~~al~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 347 (368)
T 1fch_A 271 VAAYRRALELQPGYIRSRYNLGISCIN---LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD 347 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChH
Confidence 9999998 4455 56788889999999 999999999999999998877 789999999999999999
Q ss_pred HHHHHHHH
Q 048578 454 DAGKMRRL 461 (519)
Q Consensus 454 ~A~~~~~~ 461 (519)
+|..++++
T Consensus 348 ~A~~~~~~ 355 (368)
T 1fch_A 348 AYGAADAR 355 (368)
T ss_dssp GHHHHHTT
T ss_pred hHHHhHHH
Confidence 99998763
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.80 E-value=3.8e-18 Score=159.83 Aligned_cols=344 Identities=12% Similarity=0.051 Sum_probs=146.3
Q ss_pred CChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHHHHHhC
Q 048578 79 SQIAYAHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKSK 158 (519)
Q Consensus 79 ~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~ 158 (519)
|++++|.+.++++..| .+|..+..++.+.|++++|++.|.+. +|..+|..++.++...|+.+++...+....
T Consensus 17 ~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ar 88 (449)
T 1b89_A 17 GNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMAR 88 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 6667777777766433 36667777777777777777776432 455566666666666666555555443332
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048578 159 DFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLS 238 (519)
Q Consensus 159 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 238 (519)
...+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|..+|..+ ..|..+..
T Consensus 89 k~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~ 156 (449)
T 1b89_A 89 KKARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLAS 156 (449)
T ss_dssp --------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT---------TCHHHHHH
T ss_pred HhCccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHH
Confidence 233445667777777888888877776664 366667888888888888888888888766 26777777
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHH
Q 048578 239 ACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKM 318 (519)
Q Consensus 239 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 318 (519)
++.+.|+++.|.+.+.++ .++.+|..++.+|...|+++.|......+. ..+.....++..|.+.|++++|..+
T Consensus 157 ~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~l 229 (449)
T 1b89_A 157 TLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITM 229 (449)
T ss_dssp HHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHH
Confidence 888888888887777776 256777788888888888888877666544 3444455678888888999999888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhc--cCcHHHHHHHHHHcHHhcCCCC------ChhHHHHHHHHHHhcCChHHHHHHH
Q 048578 319 FWQMQMSGIKPDDVTLIAVLTACSH--AGLIEKGKEIFYNMRRDYKVEP------NVKHYGCLVDLLCRARLLDEAYEVI 390 (519)
Q Consensus 319 ~~~m~~~g~~p~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~ 390 (519)
++...... +--...|+-+.-+|++ .+++.+.++.|. +..+++| +...|..+...|..-++++.|..+.
T Consensus 230 Le~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 230 LEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 88876543 3333455555444443 344444444443 3234544 4677889999999999999998766
Q ss_pred HhCCCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 048578 391 RNMPMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRL 461 (519)
Q Consensus 391 ~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (519)
-+- .|+..--..+.....+ ..+.+---+...--++.. |..++.|..++...=+...+.+++++
T Consensus 306 ~~h--~~~a~~~~~f~~~~~k---v~n~elyYkai~fyl~~~---p~~l~~ll~~l~~~ld~~r~v~~~~~ 368 (449)
T 1b89_A 306 MNH--PTDAWKEGQFKDIITK---VANVELYYRAIQFYLEFK---PLLLNDLLMVLSPRLDHTRAVNYFSK 368 (449)
T ss_dssp HHS--TTTTCCHHHHHHHHHH---CSSTHHHHHHHHHHHHHC---GGGHHHHHHHHGGGCCHHHHHHHHHH
T ss_pred HhC--ChhhhhhHHHHHHHhc---hhHHHHHHHHHHHHHhcC---HHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 553 1222222223333333 444444333333333333 33556666655544444444444433
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.8e-15 Score=151.62 Aligned_cols=395 Identities=9% Similarity=0.021 Sum_probs=285.6
Q ss_pred CCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHH
Q 048578 59 DNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIIN---PSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYP 135 (519)
Q Consensus 59 ~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 135 (519)
|.+...|..++.. .+. |++++|..+|+++.+ .+...|..++..+.+.|++++|..+|+++... .|+...|.
T Consensus 10 P~~~~~w~~l~~~-~~~---~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~ 83 (530)
T 2ooe_A 10 PYDLDAWSILIRE-AQN---QPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWK 83 (530)
T ss_dssp TTCHHHHHHHHHH-HHS---SCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHH
T ss_pred CCCHHHHHHHHHH-HHh---CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHH
Confidence 4467788888874 566 999999999999854 35567889999999999999999999999985 36766666
Q ss_pred HHHHHH-cCccc---hH----HHHHHHHHhCCCCC-chhHHHHHHHHHHh---------cCChHHHHHHHhcCCC-Cch-
Q 048578 136 ILLKAC-GDLRQ---VK----GVHSLVVKSKDFNS-VIHSLTRLITFYCN---------FGDVKSAQLLFDQMTE-KNV- 195 (519)
Q Consensus 136 ~ll~~~-~~~~~---~~----~~~~~~~~~~~~~~-~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~-~~~- 195 (519)
..+... ...|+ +. .+++...+..+..| +...|...+....+ .|+++.|..+|++..+ |..
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~ 163 (530)
T 2ooe_A 84 CYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMIN 163 (530)
T ss_dssp HHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTT
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhh
Confidence 655422 12232 32 24444444322443 56677777776654 7899999999999875 332
Q ss_pred --hHHHHHHHHH-------------HHcCChhHHHHHHHHHH------hCC---CCCC--------HHHHHHHHHHHhcc
Q 048578 196 --VTWTAMINGH-------------VKQKNYREGIDLFRKMR------DSG---VEVN--------ELTLVSVLSACANL 243 (519)
Q Consensus 196 --~~~~~li~~~-------------~~~~~~~~a~~~~~~m~------~~~---~~~~--------~~~~~~ll~~~~~~ 243 (519)
..|....... .+.+++..|..++.++. +.. ++|+ ...|...+......
T Consensus 164 ~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~ 243 (530)
T 2ooe_A 164 IEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSN 243 (530)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcC
Confidence 2343322211 12355777777776532 221 2443 23454444433221
Q ss_pred ----CCh----HHHHHHHHHHHHcCCCcchhHHHHHHHHHHh-------cCCHH-------HHHHHHhhcCC---C-Chh
Q 048578 244 ----GAS----ELGKWVHEFVNKNCIILNDKLGAALTDMYAK-------CGYIE-------EALRVFKIVLE---K-NVC 297 (519)
Q Consensus 244 ----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~a~~~~~~~~~---~-~~~ 297 (519)
++. +.+..+|++..... +.+...|..++..+.+ .|+++ +|..+|++..+ | +..
T Consensus 244 ~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~ 322 (530)
T 2ooe_A 244 PLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNML 322 (530)
T ss_dssp SSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHH
T ss_pred CccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHH
Confidence 233 36777888888864 5678888888888875 68877 89999998874 3 567
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHH
Q 048578 298 TWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDD--VTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVD 375 (519)
Q Consensus 298 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 375 (519)
.|..++..+.+.|++++|..+|+++.+. .|+. ..|..++..+.+.|++++|..+|++..+. .+.+...|...+.
T Consensus 323 l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~ 398 (530)
T 2ooe_A 323 LYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAAL 398 (530)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHH
Confidence 8999999999999999999999999984 5543 47888888899999999999999999873 2223333333222
Q ss_pred H-HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCc----hHHHHHHHHHh
Q 048578 376 L-LCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDG----NYVLMSNIYAA 448 (519)
Q Consensus 376 ~-~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~ 448 (519)
. +...|+.++|..+|++. ...| +...|..++..+.. .|+.++|..+|+++++..|.++. +|...+.....
T Consensus 399 ~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~---~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~ 475 (530)
T 2ooe_A 399 MEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH---LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN 475 (530)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---TTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHH
T ss_pred HHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHh---CCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 2 34689999999999987 4445 56788899988888 99999999999999998877665 88888898899
Q ss_pred cCCchHHHHHHHHHHhCCC
Q 048578 449 KAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 449 ~g~~~~A~~~~~~m~~~~~ 467 (519)
.|+.+.+.++++++.+.-.
T Consensus 476 ~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 476 IGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp SSCHHHHHHHHHHHHHHTH
T ss_pred cCCHHHHHHHHHHHHHHCc
Confidence 9999999999999876543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.4e-16 Score=153.84 Aligned_cols=373 Identities=12% Similarity=-0.030 Sum_probs=283.9
Q ss_pred CCCchhHHHHHHHHHhh-cCCCChHHHHHHHhcCCC-CCcchHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCcc
Q 048578 59 DNRTISDTQLAKLIESL-VNSSQIAYAHLVFNQIIN-PSTFAFNTVIRGYAE----AGLGHRGIQLYTQMIGNGLDPDSF 132 (519)
Q Consensus 59 ~~~~~~~~~ll~~~~~~-~~~~~~~~A~~~~~~~~~-~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~ 132 (519)
..++.....|...|..- +..+++++|...|+...+ .+..++..+...|.. .+++++|++.|++..+.| +..
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~ 112 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQ 112 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 44667777777777761 112899999999988743 567788888888988 899999999999999865 455
Q ss_pred hHHHHHHHHcC----ccchHHHHHHHHHhCCCCCchhHHHHHHHHHHh----cCChHHHHHHHhcCCC-CchhHHHHHHH
Q 048578 133 TYPILLKACGD----LRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCN----FGDVKSAQLLFDQMTE-KNVVTWTAMIN 203 (519)
Q Consensus 133 ~~~~ll~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~ 203 (519)
.+..+-..+.. .++.+++...+.+.. -.-+...+..+...|.. .++.++|...|++..+ .+..++..+..
T Consensus 113 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~-~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~ 191 (490)
T 2xm6_A 113 AQQNLGVMYHEGNGVKVDKAESVKWFRLAA-EQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGY 191 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 55556555655 566777777766554 23356677778888877 7899999999988754 56778888888
Q ss_pred HHHH----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHcCCCcchhHHHHHHHHH
Q 048578 204 GHVK----QKNYREGIDLFRKMRDSGVEVNELTLVSVLSACAN----LGASELGKWVHEFVNKNCIILNDKLGAALTDMY 275 (519)
Q Consensus 204 ~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 275 (519)
.|.. .+++++|.+.|++..+.| +...+..+...+.. .+++++|...++...+.+ +...+..+..+|
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y 265 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYIL 265 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHH
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 8888 899999999999988765 55667777777765 789999999999988765 345666677778
Q ss_pred Hh----cCCHHHHHHHHhhcCCC-ChhhHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 048578 276 AK----CGYIEEALRVFKIVLEK-NVCTWNSIIGGLAIH-----GCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAG 345 (519)
Q Consensus 276 ~~----~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 345 (519)
.. .++.++|..+|++..+. +..++..+...+... +++++|..+|++..+.| +...+..+...|...|
T Consensus 266 ~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g 342 (490)
T 2xm6_A 266 EQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLG 342 (490)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSC
T ss_pred HCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCC
Confidence 77 88999999999888654 667777888888877 89999999999998865 4566777777777656
Q ss_pred ---cHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHcc-ccCCCC
Q 048578 346 ---LIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCR----ARLLDEAYEVIRNMPMEPNAVLWGSLLTACAS-ADDGAN 417 (519)
Q Consensus 346 ---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~-~~~~~~ 417 (519)
+.++|...|++..+. .+...+..+...|.. .+++++|.+.|++.--..+...+..+...|.. .+-.++
T Consensus 343 ~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d 418 (490)
T 2xm6_A 343 SEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERD 418 (490)
T ss_dssp CHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCC
T ss_pred CcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCC
Confidence 788999999998873 456788888888888 88999999999887112245666666666553 122579
Q ss_pred HHHHHHHHHHHHhhCCC---CCchHHHHHHHHHh
Q 048578 418 VELAEIAMERLIKLEPF---NDGNYVLMSNIYAA 448 (519)
Q Consensus 418 ~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 448 (519)
+++|...|+++.+.+|+ ++.+...++.++..
T Consensus 419 ~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 419 YVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 99999999999998844 66677766666554
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=6.3e-18 Score=161.14 Aligned_cols=259 Identities=10% Similarity=-0.066 Sum_probs=188.3
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHH
Q 048578 196 VTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMY 275 (519)
Q Consensus 196 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 275 (519)
..|..+...+.+.|++++|..+|+++.+.. +.+..++..+..++...|+++.|...++++.+.. +.+...+..+..+|
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY 143 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345566666666666666666666666543 2345566666666666666666666666666654 34456666666667
Q ss_pred HhcCCHHHHHHHHhhcCCCC-------------hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHH
Q 048578 276 AKCGYIEEALRVFKIVLEKN-------------VCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIK-PDDVTLIAVLTAC 341 (519)
Q Consensus 276 ~~~g~~~~a~~~~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~l~~~~ 341 (519)
...|++++|...|+++.+.+ ...+..+...+...|++++|...++++.+.... ++..++..+...+
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 77777777777666664321 223344577888899999999999999875311 1577899999999
Q ss_pred hccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHH
Q 048578 342 SHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVE 419 (519)
Q Consensus 342 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~ 419 (519)
...|++++|...|+++.+. .+.+..+|..+..+|...|++++|.+.|+++ ...| +..++..+...+.. .|+++
T Consensus 224 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~---~g~~~ 298 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCIN---LGAYR 298 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---HTCCH
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH---CCCHH
Confidence 9999999999999999883 4556789999999999999999999999988 5455 47788889899999 99999
Q ss_pred HHHHHHHHHHhhCCC------------CCchHHHHHHHHHhcCCchHHHHHHHH
Q 048578 420 LAEIAMERLIKLEPF------------NDGNYVLMSNIYAAKAQWDDAGKMRRL 461 (519)
Q Consensus 420 ~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (519)
+|...++++++..|. +..+|..++.++...|+.+.|.++.++
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999998866 367899999999999999988887654
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-16 Score=146.13 Aligned_cols=270 Identities=10% Similarity=-0.012 Sum_probs=215.2
Q ss_pred HHHHhcCChHHHHHHHhcCCCCch----hHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChH
Q 048578 172 TFYCNFGDVKSAQLLFDQMTEKNV----VTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASE 247 (519)
Q Consensus 172 ~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 247 (519)
+-....|+++.|+..++.....++ .....+.++|...|+++.|+..++. . -+|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHH
Confidence 335567999999999988765332 3456678899999999999987654 2 3567778888888999999999
Q ss_pred HHHHHHHHHHHcCC-CcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 048578 248 LGKWVHEFVNKNCI-ILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSG 326 (519)
Q Consensus 248 ~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 326 (519)
.|...++.+...+. |.+...+..+..++...|++++|++.+++ ..+..++..++..+.+.|++++|.+.++++.+.
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 159 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ- 159 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-
Confidence 99999999988764 55677778888999999999999999998 567888999999999999999999999999875
Q ss_pred CCCCHHHH---HHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHH
Q 048578 327 IKPDDVTL---IAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVL 401 (519)
Q Consensus 327 ~~p~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~ 401 (519)
.|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.|++. ...| +..+
T Consensus 160 -~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 160 -DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp -CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred -CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 4554311 22334455669999999999999984 5678889999999999999999999999997 5556 5668
Q ss_pred HHHHHHHHccccCCCCHHH-HHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHH
Q 048578 402 WGSLLTACASADDGANVEL-AEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKM 458 (519)
Q Consensus 402 ~~~ll~~~~~~~~~~~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 458 (519)
+..++..+.. .|+.++ +.++++++.+.+|+++.+. ....+.+.++++..-
T Consensus 237 l~~l~~~~~~---~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 237 LINLVVLSQH---LGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHHHH---TTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---cCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHHH
Confidence 8888888888 777765 6789999999999987554 345555555555543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=8.3e-17 Score=159.04 Aligned_cols=369 Identities=11% Similarity=-0.057 Sum_probs=221.3
Q ss_pred CCchhHHHHHHHHHhhcCCCChHHHHHHHhcCC-----------C-CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 048578 60 NRTISDTQLAKLIESLVNSSQIAYAHLVFNQII-----------N-PSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGL 127 (519)
Q Consensus 60 ~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~-----------~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 127 (519)
.....|+.|..++... |++++|++.|++.. . ....+|+.+..+|...|++++|...+++..+..
T Consensus 49 ~~a~~yn~Lg~~~~~~---G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~- 124 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLK---GQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC- 124 (472)
T ss_dssp -CCHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh-
Confidence 3456788888888888 99999999887652 1 234678889999999999999999988876520
Q ss_pred CCCcchHHHHHHHHcCccchHHHHHHHHHhCC-C-CCchhHHHHHHHHHHh--cCChHHHHHHHhcCCC--C-chhHHHH
Q 048578 128 DPDSFTYPILLKACGDLRQVKGVHSLVVKSKD-F-NSVIHSLTRLITFYCN--FGDVKSAQLLFDQMTE--K-NVVTWTA 200 (519)
Q Consensus 128 ~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~--~-~~~~~~~ 200 (519)
.+..+ . .....++.....++.. .+++++|...|++..+ | ++..+..
T Consensus 125 ---------------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~ 177 (472)
T 4g1t_A 125 ---------------------------EKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSG 177 (472)
T ss_dssp ---------------------------HHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred ---------------------------HhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 00000 0 1122334333333333 3457777777776644 3 3334443
Q ss_pred HHHH---HHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh----ccCChHHHHHHHHHHHHcCCCcchhHHHHHHH
Q 048578 201 MING---HVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACA----NLGASELGKWVHEFVNKNCIILNDKLGAALTD 273 (519)
Q Consensus 201 li~~---~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 273 (519)
+..+ +...++.++|++.+++..+.. +.+...+..+...+. ..++.+.|...+++..... +.+..++..+..
T Consensus 178 ~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~ 255 (472)
T 4g1t_A 178 LAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAK 255 (472)
T ss_dssp HHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHH
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHH
Confidence 3333 344566677777777766543 223444444443333 3356677777777776654 455666777777
Q ss_pred HHHhcCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHH-------------------cCChHHHHHHHHHHHHCCCCCCH
Q 048578 274 MYAKCGYIEEALRVFKIVLE--K-NVCTWNSIIGGLAI-------------------HGCGEEAVKMFWQMQMSGIKPDD 331 (519)
Q Consensus 274 ~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~-------------------~g~~~~a~~~~~~m~~~g~~p~~ 331 (519)
.|...|++++|...+++..+ | +..++..+...|.. .+.++.|...+++..+.. +.+.
T Consensus 256 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~ 334 (472)
T 4g1t_A 256 FYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLF 334 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTC
T ss_pred HHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cchh
Confidence 77777777777777777643 2 34445555444432 234567888888877643 3334
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCCh--hHHHHHHH-HHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHH
Q 048578 332 VTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNV--KHYGCLVD-LLCRARLLDEAYEVIRNM-PMEPNAVLWGSLLT 407 (519)
Q Consensus 332 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~-~~~~~~~~~~A~~~~~~~-~~~p~~~~~~~ll~ 407 (519)
.++..+...+...|++++|...|++..+. ...+.. ..+..+.. .+...|+.++|+..|++. .+.|+.....
T Consensus 335 ~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~---- 409 (472)
T 4g1t_A 335 RVCSILASLHALADQYEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE---- 409 (472)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH----
T ss_pred hhhhhHHHHHHHhccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH----
Confidence 57788889999999999999999998872 322221 12333333 245678999999999887 6667654322
Q ss_pred HHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCcccE
Q 048578 408 ACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPGCSV 475 (519)
Q Consensus 408 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 475 (519)
+..+.+.+++++.++.+|.++.+|..++.+|...|++++|.+.|++..+.+.......+|
T Consensus 410 --------~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 410 --------KMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp --------HHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred --------HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 234556677888889999999999999999999999999999999998877654333434
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.78 E-value=6.9e-17 Score=153.99 Aligned_cols=278 Identities=12% Similarity=0.018 Sum_probs=182.2
Q ss_pred CChHHHHH-HHhcCCC-----C--CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHH
Q 048578 79 SQIAYAHL-VFNQIIN-----P--STFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGV 150 (519)
Q Consensus 79 ~~~~~A~~-~~~~~~~-----~--~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~ 150 (519)
|++++|.. .|++... | +...+..+...+.+.|++++|+..|+++.+.
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~------------------------- 93 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ------------------------- 93 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS-------------------------
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------------------------
Confidence 77888887 7776532 1 3566888888888999999999999888873
Q ss_pred HHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC
Q 048578 151 HSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTE---KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVE 227 (519)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 227 (519)
.+.+...+..+..+|...|++++|...|+++.+ .+..++..+..++...|++++|...|+++......
T Consensus 94 ---------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 164 (368)
T 1fch_A 94 ---------DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA 164 (368)
T ss_dssp ---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT
T ss_pred ---------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 223455666777788888888888888887754 45678888888899999999999999888876422
Q ss_pred CCHHHHHH---------------HHHHHhccCChHHHHHHHHHHHHcCCCc-chhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 048578 228 VNELTLVS---------------VLSACANLGASELGKWVHEFVNKNCIIL-NDKLGAALTDMYAKCGYIEEALRVFKIV 291 (519)
Q Consensus 228 ~~~~~~~~---------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 291 (519)
+...+.. .+..+...|+++.|...++.+.+..... +..++..+..+|...|++++|...|+++
T Consensus 165 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 243 (368)
T 1fch_A 165 -YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAA 243 (368)
T ss_dssp -TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1111111 1233336677777777777777654221 4666777777777777777777777666
Q ss_pred CC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCC----
Q 048578 292 LE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVE---- 364 (519)
Q Consensus 292 ~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---- 364 (519)
.+ .+..+|..+...+...|++++|...++++.+.. +.+..++..+..++...|++++|...|+++.+...-.
T Consensus 244 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 322 (368)
T 1fch_A 244 LSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPR 322 (368)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC----
T ss_pred HHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCcc
Confidence 33 245566777777777777777777777766542 3345567777777777777777777777665521100
Q ss_pred -----CChhHHHHHHHHHHhcCChHHHHHHHHh
Q 048578 365 -----PNVKHYGCLVDLLCRARLLDEAYEVIRN 392 (519)
Q Consensus 365 -----~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 392 (519)
....+|..+..+|...|++++|..++++
T Consensus 323 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 323 GEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp --CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred ccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 0145666777777777777777666653
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.3e-17 Score=154.38 Aligned_cols=257 Identities=11% Similarity=-0.054 Sum_probs=179.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHh
Q 048578 198 WTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAK 277 (519)
Q Consensus 198 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 277 (519)
+..+...+...|++++|..+|+++.+.. +.+...+..+..++...|+++.|...++.+.+.. +.+..++..+..+|..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 3444444555555555555555544432 1234444444445555555555555555554443 3344455555555555
Q ss_pred cCCHHHHHHHHhhcCCC---ChhhHHHH--------------HH-HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048578 278 CGYIEEALRVFKIVLEK---NVCTWNSI--------------IG-GLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLT 339 (519)
Q Consensus 278 ~g~~~~a~~~~~~~~~~---~~~~~~~l--------------~~-~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 339 (519)
.|++++|.+.++++.+. +...+..+ .. .+...|++++|...++++.+.. +.+...+..+..
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 180 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGV 180 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 55555555555554321 11222222 22 3667789999999999988754 446778999999
Q ss_pred HHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCC
Q 048578 340 ACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGAN 417 (519)
Q Consensus 340 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~ 417 (519)
.+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.++++ ...| +..++..+...+.. .|+
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~---~g~ 255 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSN---MSQ 255 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTC
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH---hcc
Confidence 999999999999999999873 3456788999999999999999999999987 4444 56788888889999 999
Q ss_pred HHHHHHHHHHHHhhCCC------------CCchHHHHHHHHHhcCCchHHHHHHHHH
Q 048578 418 VELAEIAMERLIKLEPF------------NDGNYVLMSNIYAAKAQWDDAGKMRRLM 462 (519)
Q Consensus 418 ~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m 462 (519)
+++|...++++++..|. ++.++..++.++.+.|++++|..++++.
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999999998 6889999999999999999999988654
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.76 E-value=1e-14 Score=144.67 Aligned_cols=356 Identities=11% Similarity=0.012 Sum_probs=289.2
Q ss_pred CCCcchHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcC----ccchHHHHHHHHHhCCCCCch
Q 048578 93 NPSTFAFNTVIRGYAE----AGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGD----LRQVKGVHSLVVKSKDFNSVI 164 (519)
Q Consensus 93 ~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~~~~~~~~~~~~~~~~ 164 (519)
..+..++..+...|.. .+++++|+..|++..+.| +...+..+-..+.. .++.+++...+.+.. -..+.
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~-~~~~~ 111 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAA-LKGLP 111 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTTCH
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-HCCCH
Confidence 3567777888888887 899999999999999864 45566666666665 677777777776654 23466
Q ss_pred hHHHHHHHHHHh----cCChHHHHHHHhcCCC-CchhHHHHHHHHHHH----cCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 048578 165 HSLTRLITFYCN----FGDVKSAQLLFDQMTE-KNVVTWTAMINGHVK----QKNYREGIDLFRKMRDSGVEVNELTLVS 235 (519)
Q Consensus 165 ~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 235 (519)
..+..+...|.. .+++++|...|++..+ .++.++..+...|.. .+++++|.+.|++..+.| +...+..
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~ 188 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQ 188 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 777888888888 8899999999998765 466788888888887 889999999999998875 6778888
Q ss_pred HHHHHhc----cCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHh----cCCHHHHHHHHhhcCCC-ChhhHHHHHHHH
Q 048578 236 VLSACAN----LGASELGKWVHEFVNKNCIILNDKLGAALTDMYAK----CGYIEEALRVFKIVLEK-NVCTWNSIIGGL 306 (519)
Q Consensus 236 ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~ 306 (519)
+...+.. .++.++|...++...+.+ +...+..+...|.. .+++++|..+|++..+. +...+..+...+
T Consensus 189 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y 265 (490)
T 2xm6_A 189 LGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYIL 265 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8888877 899999999999999875 45677778888886 78999999999988654 667778888888
Q ss_pred HH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-----CcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHH
Q 048578 307 AI----HGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHA-----GLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLL 377 (519)
Q Consensus 307 ~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (519)
.. .+++++|..+|++..+.| +...+..+...|... +++++|...|++..+. .+...+..+...|
T Consensus 266 ~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y 338 (490)
T 2xm6_A 266 EQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGAIY 338 (490)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHH
T ss_pred HCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHHHH
Confidence 88 899999999999998765 556777777788776 8999999999999883 3456778888888
Q ss_pred HhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHcc-ccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHh----c
Q 048578 378 CRAR---LLDEAYEVIRNMPMEPNAVLWGSLLTACAS-ADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAA----K 449 (519)
Q Consensus 378 ~~~~---~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~-~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~ 449 (519)
...| +.++|+++|++.-...+...+..+...|.. .+..+++++|...++++.+.+ ++.++..|+.+|.. .
T Consensus 339 ~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~ 416 (490)
T 2xm6_A 339 FRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVE 416 (490)
T ss_dssp HHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSC
T ss_pred HhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCC
Confidence 8866 889999999988112456667767666654 222579999999999998875 57899999999998 8
Q ss_pred CCchHHHHHHHHHHhCCC
Q 048578 450 AQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 450 g~~~~A~~~~~~m~~~~~ 467 (519)
+++++|...|++..+.+.
T Consensus 417 ~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 417 RDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp CCHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHCCC
Confidence 999999999999998874
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-14 Score=151.95 Aligned_cols=385 Identities=10% Similarity=0.052 Sum_probs=270.2
Q ss_pred CCcccHHHHHHhccCchHHHHHHHHHHHhcCC--CCchhHHHHHHHHHhhcCCCChHHHHHHHhcCC-CCC-----cchH
Q 048578 28 TKSHHHLPLLQKCTHLVQFKQVHAQIIKASFD--NRTISDTQLAKLIESLVNSSQIAYAHLVFNQII-NPS-----TFAF 99 (519)
Q Consensus 28 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~-~~~-----~~~~ 99 (519)
-|...|..+|.-... .-+++.++.....++ .++.-.+..++.|... |.+.+|+++++++. .|+ ...-
T Consensus 951 ~d~~lW~~vl~~~n~--~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~a---glp~EaieLLEKivl~~s~fs~n~~Lq 1025 (1630)
T 1xi4_A 951 KDPELWGSVLLESNP--YRRPLIDQVVQTALSETQDPEEVSVTVKAFMTA---DLPNELIELLEKIVLDNSVFSEHRNLQ 1025 (1630)
T ss_pred cCHHHHHHHhcCCcH--HHHHHHHHHHHhhcccccCHHHhHHHHHHHHhC---CCHHHHHHHHHHHHcCCCcccccHHHH
Confidence 466677777744321 114555555444433 3444456677888877 99999999998884 222 1223
Q ss_pred HHHH---------------------------HHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHH
Q 048578 100 NTVI---------------------------RGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHS 152 (519)
Q Consensus 100 ~~ll---------------------------~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~ 152 (519)
+.++ ..+...|.+++|..+|++... .....+.++. ..++.+++.+
T Consensus 1026 nlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE 1097 (1630)
T 1xi4_A 1026 NLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYE 1097 (1630)
T ss_pred HHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHH
Confidence 3333 345566777777777777521 1111222322 3444555555
Q ss_pred HHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHH
Q 048578 153 LVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELT 232 (519)
Q Consensus 153 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 232 (519)
...+. .+..+|..+..++...|++++|...|.+. .|...|..++.++.+.|++++|.+.|...++.. ++...
T Consensus 1098 ~Aerv----n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~I 1169 (1630)
T 1xi4_A 1098 FAERC----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYV 1169 (1630)
T ss_pred HHHhc----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccc
Confidence 55443 23667888888888999999999988664 567778888899999999999999988777653 33333
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCh
Q 048578 233 LVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCG 312 (519)
Q Consensus 233 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 312 (519)
.+.++.+|++.++++....+. + .++...+..+...|...|++++|..+|..+ ..|..+...+.+.|++
T Consensus 1170 dt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~ 1237 (1630)
T 1xi4_A 1170 ETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEY 1237 (1630)
T ss_pred cHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCH
Confidence 345788888888887544432 2 345556667888899999999999999875 5888899999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 048578 313 EEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRN 392 (519)
Q Consensus 313 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 392 (519)
++|.+.+++. .+..+|..+-.+|...|++..|......+. .++..+..++..|.+.|.+++|+.+++.
T Consensus 1238 q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~Ii------v~~deLeeli~yYe~~G~feEAI~LlE~ 1305 (1630)
T 1xi4_A 1238 QAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV------VHADELEELINYYQDRGYFEELITMLEA 1305 (1630)
T ss_pred HHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh------cCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999998876 355788888889999999888888665432 3566777899999999999999999988
Q ss_pred C-CCCCCH-HHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCC-----CCCchHHHHHHHHHhcCCchHHHHH
Q 048578 393 M-PMEPNA-VLWGSLLTACASADDGANVELAEIAMERLIKLEP-----FNDGNYVLMSNIYAAKAQWDDAGKM 458 (519)
Q Consensus 393 ~-~~~p~~-~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~ 458 (519)
. ++.|.. ..|.-+...+.+.+ .++..++.++|..-....| .+...|..+...|.+.|++++|...
T Consensus 1306 aL~LeraH~gmftELaiLyaKy~-peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1306 ALGLERAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HhccChhHhHHHHHHHHHHHhCC-HHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 7 666643 35655555565533 5667777777776655555 4788999999999999999999853
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-16 Score=146.32 Aligned_cols=249 Identities=9% Similarity=0.038 Sum_probs=203.9
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcC
Q 048578 202 INGHVKQKNYREGIDLFRKMRDSGVEVNE--LTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCG 279 (519)
Q Consensus 202 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 279 (519)
++.....|++..|+..++..... .|+. .....+.+++...|+++.|...++. ..+|+...+..+...+...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 45567889999999999876543 4443 3556678899999999999876644 24677888999999999999
Q ss_pred CHHHHHHHHhhcCC----C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 048578 280 YIEEALRVFKIVLE----K-NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIF 354 (519)
Q Consensus 280 ~~~~a~~~~~~~~~----~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 354 (519)
+.++|++.++++.. | +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999998742 3 556777788999999999999999987 457779999999999999999999999
Q ss_pred HHcHHhcCCCCChhHH---HHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHH
Q 048578 355 YNMRRDYKVEPNVKHY---GCLVDLLCRARLLDEAYEVIRNM--PMEPNAVLWGSLLTACASADDGANVELAEIAMERLI 429 (519)
Q Consensus 355 ~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~ 429 (519)
+++.+. .|+.... ..++..+...|++++|..+|+++ ..+.+...++.+..++.. .|++++|...+++++
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~---~g~~~eA~~~l~~al 227 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMA---QGRWEAAEGVLQEAL 227 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHH
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHH
Confidence 999884 3543211 22334445569999999999998 333467789999999999 999999999999999
Q ss_pred hhCCCCCchHHHHHHHHHhcCCchH-HHHHHHHHHhCCCc
Q 048578 430 KLEPFNDGNYVLMSNIYAAKAQWDD-AGKMRRLMKERNIV 468 (519)
Q Consensus 430 ~~~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~~~~ 468 (519)
+.+|+++.++..++.++...|+.++ +.++++++.+.+..
T Consensus 228 ~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~ 267 (291)
T 3mkr_A 228 DKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267 (291)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred HhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999976 57899998875543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-18 Score=161.82 Aligned_cols=250 Identities=12% Similarity=0.093 Sum_probs=111.5
Q ss_pred hcCChHHHHHHHhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 048578 176 NFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEF 255 (519)
Q Consensus 176 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 255 (519)
+.|++++|.++++++..| .+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|..+++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 567889999999988555 48889999999999999999998652 5777888899999999999999998887
Q ss_pred HHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 048578 256 VNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLI 335 (519)
Q Consensus 256 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 335 (519)
.++. .+++.+.+.++.+|.+.|+++++.++++. |+..+|..+...|...|++++|...|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 7774 45577888899999999999998887753 67778999999999999999999999876 3688
Q ss_pred HHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHccccCC
Q 048578 336 AVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDG 415 (519)
Q Consensus 336 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 415 (519)
.++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+...|+. ...++..|.+ .
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~--l~~lv~~Yek---~ 220 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE--LEELINYYQD---R 220 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHH--HHHHHHHHHH---T
T ss_pred HHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhh--HHHHHHHHHH---C
Confidence 8999999999999999998877 26788999999999999999997666655444443 4467788888 8
Q ss_pred CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhc--CCchHHHHHH
Q 048578 416 ANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAK--AQWDDAGKMR 459 (519)
Q Consensus 416 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~ 459 (519)
|.+++|..+++..+.+++.....|..|+.+|++- |++.+.++.|
T Consensus 221 G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~ 266 (449)
T 1b89_A 221 GYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELF 266 (449)
T ss_dssp TCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 8999999999999998888888999998888866 3444444443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.1e-16 Score=150.56 Aligned_cols=233 Identities=12% Similarity=0.001 Sum_probs=196.3
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHH
Q 048578 229 NELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLE---KNVCTWNSIIGG 305 (519)
Q Consensus 229 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~ 305 (519)
+...+..+...+.+.|+++.|..+++.+.+.. +.+..++..+..+|...|++++|+..|+++.+ .+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 44557888889999999999999999999886 66788999999999999999999999998854 467889999999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCH-----------HHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHH
Q 048578 306 LAIHGCGEEAVKMFWQMQMSGIKPDD-----------VTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLV 374 (519)
Q Consensus 306 ~~~~g~~~~a~~~~~~m~~~g~~p~~-----------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 374 (519)
+...|++++|...++++.+. .|+. ..+..+...+...|++++|...|+++.+.....++..++..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999874 3332 2334557889999999999999999998432222688999999
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCc
Q 048578 375 DLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQW 452 (519)
Q Consensus 375 ~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 452 (519)
..|...|++++|.+.|+++ ...| +..+|..+...+.. .|++++|...++++++..|.++.++..++.+|.+.|++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLAN---GDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 9999999999999999998 4445 57789999999999 99999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhCCC
Q 048578 453 DDAGKMRRLMKERNI 467 (519)
Q Consensus 453 ~~A~~~~~~m~~~~~ 467 (519)
++|...+++..+...
T Consensus 298 ~~A~~~~~~al~~~~ 312 (365)
T 4eqf_A 298 REAVSNFLTALSLQR 312 (365)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCc
Confidence 999999999986543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.8e-14 Score=144.38 Aligned_cols=401 Identities=9% Similarity=-0.000 Sum_probs=279.2
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHHHHHhCCCCCchhHHHHHHHH
Q 048578 94 PSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKSKDFNSVIHSLTRLITF 173 (519)
Q Consensus 94 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 173 (519)
.+...|..++. +.+.|++++|..+|+++.+. .+-+...|...+..+.+.|+.+++...+.+.-...|+...|..++..
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~ 88 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSY 88 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 46778999998 47899999999999999984 33355578888888888899888888887776566777777777653
Q ss_pred -HHhcCChHHHHH----HHhcCCC------CchhHHHHHHHHHHH---------cCChhHHHHHHHHHHhCCCCCCHHHH
Q 048578 174 -YCNFGDVKSAQL----LFDQMTE------KNVVTWTAMINGHVK---------QKNYREGIDLFRKMRDSGVEVNELTL 233 (519)
Q Consensus 174 -~~~~g~~~~A~~----~~~~~~~------~~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~~~~~~~~~~ 233 (519)
....|+.++|.+ +|+.... ++...|...+..... .|++++|..+|++..+....+....|
T Consensus 89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~ 168 (530)
T 2ooe_A 89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLW 168 (530)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHH
T ss_pred HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHH
Confidence 345677777665 6665421 355678887776655 68899999999999873111112333
Q ss_pred HHHHHHH-------------hccCChHHHHHHHHHHH------HcC---CCcc--------hhHHHHHHHHHHhc----C
Q 048578 234 VSVLSAC-------------ANLGASELGKWVHEFVN------KNC---IILN--------DKLGAALTDMYAKC----G 279 (519)
Q Consensus 234 ~~ll~~~-------------~~~~~~~~a~~~~~~~~------~~~---~~~~--------~~~~~~l~~~~~~~----g 279 (519)
....... ...++++.|..++.... +.. ++|+ ...|...+...... +
T Consensus 169 ~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~ 248 (530)
T 2ooe_A 169 RDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTE 248 (530)
T ss_dssp HHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCS
T ss_pred HHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCC
Confidence 3322211 12345666776666532 111 2333 23454444333221 2
Q ss_pred CH----HHHHHHHhhcCC---CChhhHHHHHHHHHH-------cCChH-------HHHHHHHHHHHCCCCCCHHHHHHHH
Q 048578 280 YI----EEALRVFKIVLE---KNVCTWNSIIGGLAI-------HGCGE-------EAVKMFWQMQMSGIKPDDVTLIAVL 338 (519)
Q Consensus 280 ~~----~~a~~~~~~~~~---~~~~~~~~l~~~~~~-------~g~~~-------~a~~~~~~m~~~g~~p~~~~~~~l~ 338 (519)
+. +++..+|+++.. .+...|...+..+.+ .|+++ +|..++++..+.-.+-+...+..++
T Consensus 249 ~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~ 328 (530)
T 2ooe_A 249 DQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYA 328 (530)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 22 467778887754 367788888888776 69987 8999999988632233567899999
Q ss_pred HHHhccCcHHHHHHHHHHcHHhcCCCCC-h-hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHH-Hcccc
Q 048578 339 TACSHAGLIEKGKEIFYNMRRDYKVEPN-V-KHYGCLVDLLCRARLLDEAYEVIRNM-PMEPN-AVLWGSLLTA-CASAD 413 (519)
Q Consensus 339 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~-~~~~~~ll~~-~~~~~ 413 (519)
..+.+.|++++|..+|+++.+ .+|+ . ..|..++..+.+.|++++|.++|++. ...|+ ...+...... +..
T Consensus 329 ~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~-- 403 (530)
T 2ooe_A 329 DYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC-- 403 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH---SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHH--
T ss_pred HHHHhcCCHHHHHHHHHHHhC---ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH--
Confidence 999999999999999999987 2443 2 58999999999999999999999998 54443 2333322222 335
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc-cC-CcccEEEECCEEEEEEeCCCC
Q 048578 414 DGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIV-KN-PGCSVIEINDVVHEFMVGDGR 491 (519)
Q Consensus 414 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~ 491 (519)
.|+.++|..+|+++++..|+++..|..++..+.+.|+.++|..+|++....+.. |+ ....|. .++.-...
T Consensus 404 -~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~-------~~~~~e~~ 475 (530)
T 2ooe_A 404 -SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWA-------RFLAFESN 475 (530)
T ss_dssp -TCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHH-------HHHHHHHH
T ss_pred -cCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHH-------HHHHHHHH
Confidence 789999999999999999999999999999999999999999999999887532 21 111120 00111123
Q ss_pred CCChhHHHHHHHHHHHHH
Q 048578 492 HPCSEEIYSMLEYVAISL 509 (519)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~ 509 (519)
+++.+.+..+..+.....
T Consensus 476 ~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 476 IGDLASILKVEKRRFTAF 493 (530)
T ss_dssp SSCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHC
Confidence 566777777666665443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.72 E-value=2.8e-16 Score=147.01 Aligned_cols=262 Identities=9% Similarity=0.004 Sum_probs=212.1
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCCC---CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048578 163 VIHSLTRLITFYCNFGDVKSAQLLFDQMTE---KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSA 239 (519)
Q Consensus 163 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 239 (519)
+...+..+...+...|++++|..+|+++.+ .+..+|..+..++...|++++|...++++.+.. +.+..++..+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 345567778889999999999999998754 356788889999999999999999999998764 3467788888999
Q ss_pred HhccCChHHHHHHHHHHHHcCCCcchhHHHHH--------------HH-HHHhcCCHHHHHHHHhhcCC---CChhhHHH
Q 048578 240 CANLGASELGKWVHEFVNKNCIILNDKLGAAL--------------TD-MYAKCGYIEEALRVFKIVLE---KNVCTWNS 301 (519)
Q Consensus 240 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ 301 (519)
+...|+++.|...++.+.+.. +.+...+..+ .. .+...|++++|...++++.+ .+...+..
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 177 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHAS 177 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 999999999999999998864 2233333333 22 37788899999999988754 36778889
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcC
Q 048578 302 IIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRAR 381 (519)
Q Consensus 302 l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 381 (519)
+...+...|++++|...++++.+.. +.+..++..+..++...|++++|...|+++.+. .+.+...+..+..+|...|
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI--NPGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999998753 445678999999999999999999999999873 3456788999999999999
Q ss_pred ChHHHHHHHHhC-CCCCC-------------HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhC
Q 048578 382 LLDEAYEVIRNM-PMEPN-------------AVLWGSLLTACASADDGANVELAEIAMERLIKLE 432 (519)
Q Consensus 382 ~~~~A~~~~~~~-~~~p~-------------~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~ 432 (519)
++++|.+.++++ ...|+ ...+..+..++.. .|++++|..+++++++..
T Consensus 255 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~l~~~ 316 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNV---MNRPDLVELTYAQNVEPF 316 (327)
T ss_dssp CHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHH---TTCHHHHHHHTTCCSHHH
T ss_pred cHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHhc
Confidence 999999999887 33344 5688888888999 999999999988766543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-13 Score=144.39 Aligned_cols=401 Identities=14% Similarity=0.073 Sum_probs=280.7
Q ss_pred chhhhhhhhhccccCCCCCCCCCcccHHHHHHhccCchHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCChHHHHH
Q 048578 7 PNSQLTHFTNSANSHKNSNTATKSHHHLPLLQKCTHLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHL 86 (519)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~ 86 (519)
|..++..+..+... ++...-+...-+.++....+. +..++.+.+.+.+ ......+...+... |.+++|..
T Consensus 1001 p~EaieLLEKivl~--~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd----~~d~~eIA~Iai~l---glyEEAf~ 1070 (1630)
T 1xi4_A 1001 PNELIELLEKIVLD--NSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD----NYDAPDIANIAISN---ELFEEAFA 1070 (1630)
T ss_pred HHHHHHHHHHHHcC--CCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh----hccHHHHHHHHHhC---CCHHHHHH
Confidence 45566666666532 111112333344444333222 3344444444333 12244466677777 99999999
Q ss_pred HHhcCCCCCcchHHHHHHHHH-hcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHHHHHhCCCCCchh
Q 048578 87 VFNQIINPSTFAFNTVIRGYA-EAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKSKDFNSVIH 165 (519)
Q Consensus 87 ~~~~~~~~~~~~~~~ll~~~~-~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (519)
+|++.. .+...+..+. ..+++++|.++.++. -++.+|..+-+++...|+.+++.+.+.+. .+..
T Consensus 1071 IYkKa~-----~~~~A~~VLie~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA----dD~s 1135 (1630)
T 1xi4_A 1071 IFRKFD-----VNTSAVQVLIEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA----DDPS 1135 (1630)
T ss_pred HHHHcC-----CHHHHHHHHHHHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc----CChH
Confidence 999974 2222233333 778899999998855 34678999999999999999998888775 3567
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCC--CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 048578 166 SLTRLITFYCNFGDVKSAQLLFDQMTE--KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANL 243 (519)
Q Consensus 166 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 243 (519)
.|..++..+.+.|++++|.++|....+ +++...+.++.+|++.+++++...+. + .++...|..+...|...
T Consensus 1136 ay~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~e 1208 (1630)
T 1xi4_A 1136 SYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDE 1208 (1630)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhc
Confidence 788899999999999999999987654 34344456899999999988644332 2 34666777899999999
Q ss_pred CChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 048578 244 GASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQ 323 (519)
Q Consensus 244 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 323 (519)
|++++|..+|..+ ..|..+..+|.+.|++++|.+.+++. .+..+|..+..+|...|++..|......
T Consensus 1209 g~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acve~~Ef~LA~~cgl~-- 1275 (1630)
T 1xi4_A 1209 KMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLH-- 1275 (1630)
T ss_pred CCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhhhhHHHHHHHHHHh--
Confidence 9999999999985 37889999999999999999999987 5668899999999999998888876654
Q ss_pred HCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhc--CChHHHHHHHHhC-CCCC---
Q 048578 324 MSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRA--RLLDEAYEVIRNM-PMEP--- 397 (519)
Q Consensus 324 ~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~-~~~p--- 397 (519)
+..+...+..++..|.+.|.+++|+.+++....- . +-....|+-+..+|++- +++.++.+.|..- .+.|
T Consensus 1276 ---Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L-e-raH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r 1350 (1630)
T 1xi4_A 1276 ---IVVHADELEELINYYQDRGYFEELITMLEAALGL-E-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLR 1350 (1630)
T ss_pred ---hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-C-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhH
Confidence 3445667778888999999999999999777651 1 33445666677776654 4566666666544 4433
Q ss_pred ---CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHh------------hCCCCCchHHHHHHHHHhcC------------
Q 048578 398 ---NAVLWGSLLTACASADDGANVELAEIAMERLIK------------LEPFNDGNYVLMSNIYAAKA------------ 450 (519)
Q Consensus 398 ---~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~------------~~p~~~~~~~~l~~~~~~~g------------ 450 (519)
+...|..++..|.+ .|+++.|...+-+-.. ..+.|+..|...+..|...+
T Consensus 1351 ~~e~~~lW~elv~LY~~---~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~P~~lndLl~~l~ 1427 (1630)
T 1xi4_A 1351 AAEQAHLWAELVFLYDK---YEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLS 1427 (1630)
T ss_pred HHHHHHHHHHHHHHHHh---cccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhChHHHHHHHHHhh
Confidence 45678888888888 8888888843222211 13456777777777777666
Q ss_pred ---CchHHHHHHH
Q 048578 451 ---QWDDAGKMRR 460 (519)
Q Consensus 451 ---~~~~A~~~~~ 460 (519)
+.+.+.++|+
T Consensus 1428 ~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1428 PRLDHTRAVNYFS 1440 (1630)
T ss_pred hcCChHHHHHHHH
Confidence 6666666665
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.8e-15 Score=133.38 Aligned_cols=230 Identities=11% Similarity=-0.016 Sum_probs=157.3
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHH
Q 048578 196 VTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMY 275 (519)
Q Consensus 196 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 275 (519)
..|..+...+...|++++|...|++..+.. .+...+..+..++...|+++.|...++.+.+......
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~----------- 72 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR----------- 72 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc-----------
Confidence 345556666666666666666666665554 4555555555555555666666555555544220000
Q ss_pred HhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 048578 276 AKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFY 355 (519)
Q Consensus 276 ~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 355 (519)
.+.. ....++..+...+...|++++|...++++.+. .|+. ..+...|++++|...++
T Consensus 73 ---~~~~-----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~ 129 (258)
T 3uq3_A 73 ---ADYK-----------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAE 129 (258)
T ss_dssp ---CCHH-----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHH
T ss_pred ---cchH-----------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHH
Confidence 0000 00345666677777777777777777777663 3443 34555677888888888
Q ss_pred HcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCC
Q 048578 356 NMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEP 433 (519)
Q Consensus 356 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p 433 (519)
.+.. ..+.+...+..+...+...|++++|...+++. ...| +...+..+...+.. .|++++|...++++++.+|
T Consensus 130 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~al~~~~ 204 (258)
T 3uq3_A 130 AEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK---LMSFPEAIADCNKAIEKDP 204 (258)
T ss_dssp HHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCT
T ss_pred HHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHhCH
Confidence 8776 33345667778888888888888888888887 3334 56678888888888 8899999999999999998
Q ss_pred CCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048578 434 FNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 434 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
.++.++..++.+|.+.|++++|.+.+++..+..
T Consensus 205 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 205 NFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 888889999999999999999999988887644
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.4e-15 Score=131.55 Aligned_cols=196 Identities=12% Similarity=0.011 Sum_probs=153.0
Q ss_pred CcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048578 262 ILNDKLGAALTDMYAKCGYIEEALRVFKIVLEK---NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVL 338 (519)
Q Consensus 262 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~ 338 (519)
|++...+..+...+.+.|++++|...|++..+. +...+..+...+.+.|++++|+..+++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 456667777888888888888888888877542 56778888888899999999999999988753 33456888888
Q ss_pred HHHhcc-----------CcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHH
Q 048578 339 TACSHA-----------GLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPNAVLWGSLL 406 (519)
Q Consensus 339 ~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~~~~~ll 406 (519)
.++... |++++|+..|++..+. .+.+...+..+..+|...|++++|+..|++. .+..+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence 888888 9999999999999883 3446788899999999999999999999988 2226788888999
Q ss_pred HHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 048578 407 TACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMK 463 (519)
Q Consensus 407 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (519)
..+.. .|++++|...++++++.+|+++.++..++.++.+.|++++|.+.+++..
T Consensus 159 ~~~~~---~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLS---MGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHH---HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHH---cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999 9999999999999999999999999999999999999999999998754
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.1e-15 Score=134.67 Aligned_cols=234 Identities=10% Similarity=0.000 Sum_probs=154.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCC--CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCC--CCC----HHHHHH
Q 048578 164 IHSLTRLITFYCNFGDVKSAQLLFDQMTE--KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGV--EVN----ELTLVS 235 (519)
Q Consensus 164 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~----~~~~~~ 235 (519)
...+..+...+...|++++|...|++..+ .+...|..+..++...|++++|...+++..+... .++ ..++..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 56788899999999999999999988744 6778899999999999999999999999876521 112 466777
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHH
Q 048578 236 VLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEA 315 (519)
Q Consensus 236 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 315 (519)
+...+...|+++.|...++.+.+.. |+. .. +...|++++|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~-------------------------------~~~~~~~~~a 124 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DI-------------------------------LTKLRNAEKE 124 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HH-------------------------------HHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--chh-------HH-------------------------------HHHHhHHHHH
Confidence 7777777888888888777777654 221 12 3334445555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C
Q 048578 316 VKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-P 394 (519)
Q Consensus 316 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~ 394 (519)
...++++.... +.+...+..+...+...|++++|...|+++.+. .+.+...|..+..+|...|++++|...+++. .
T Consensus 125 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 125 LKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp HHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 55555555431 112235555666666666666666666666552 2334556666666666666666666666665 3
Q ss_pred CCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhC------CCCCchHHHHH
Q 048578 395 MEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLE------PFNDGNYVLMS 443 (519)
Q Consensus 395 ~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~ 443 (519)
..| +...+..+...+.. .|++++|...++++.+.. |.+...+..+.
T Consensus 202 ~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 202 KDPNFVRAYIRKATAQIA---VKEYASALETLDAARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHH
Confidence 333 34556666666666 677777777777777666 55544444443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.7e-16 Score=158.00 Aligned_cols=114 Identities=10% Similarity=0.044 Sum_probs=89.7
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHH
Q 048578 297 CTWNSIIGGLAIHGCGEEAVKMFWQMQM---SGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCL 373 (519)
Q Consensus 297 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~---~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 373 (519)
.+|+++|.+|++.|++++|.++|++|.+ .|+.||..||++||.+|++.|++++|.++|++|.+ .|+.||..||+++
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~-~G~~PDvvTYntL 206 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD-AGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-TTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCcHHHHHHH
Confidence 4788888888888888888888877653 46788888888888888888888888888888877 4888888888888
Q ss_pred HHHHHhcCCh-HHHHHHHHhC---CCCCCHHHHHHHHHHHcc
Q 048578 374 VDLLCRARLL-DEAYEVIRNM---PMEPNAVLWGSLLTACAS 411 (519)
Q Consensus 374 ~~~~~~~~~~-~~A~~~~~~~---~~~p~~~~~~~ll~~~~~ 411 (519)
|.++++.|+. ++|.++|++| |+.||..+|++++.++.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 8888888774 6777888888 888888888877655444
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.7e-16 Score=160.44 Aligned_cols=123 Identities=12% Similarity=0.128 Sum_probs=110.8
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhcCC-------CCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 048578 162 SVIHSLTRLITFYCNFGDVKSAQLLFDQMT-------EKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLV 234 (519)
Q Consensus 162 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 234 (519)
....+|+++|++||+.|++++|.++|+.|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 345689999999999999999999997763 4899999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCh-HHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHH
Q 048578 235 SVLSACANLGAS-ELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEA 284 (519)
Q Consensus 235 ~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 284 (519)
++|.++++.|+. +.|.+++++|.+.|+.||..+|+.++....+.+-++.+
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~V 255 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHH
Confidence 999999999985 78999999999999999999999998776665433333
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.1e-14 Score=130.62 Aligned_cols=241 Identities=11% Similarity=-0.056 Sum_probs=177.3
Q ss_pred HcCChhHHHHHHHHHHhCCCC---CCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHH
Q 048578 207 KQKNYREGIDLFRKMRDSGVE---VNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEE 283 (519)
Q Consensus 207 ~~~~~~~a~~~~~~m~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 283 (519)
..|++++|+..|+++.+.... .+..++..+...+...|+++.|...++.+.+.. +.+..++..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 346677777777777765321 134566667777777777777777777777764 4466777778888888888888
Q ss_pred HHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHh
Q 048578 284 ALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRD 360 (519)
Q Consensus 284 a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 360 (519)
|...|+++.+ .+..++..+...+...|++++|...++++.+. .|+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 8888877744 35677888888899999999999999998874 455555555555667779999999999888773
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-----HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC
Q 048578 361 YKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPN-----AVLWGSLLTACASADDGANVELAEIAMERLIKLEPF 434 (519)
Q Consensus 361 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~-----~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (519)
.+++...+. ++..+...++.++|.+.+++. ...|+ ...+..+...+.. .|++++|...++++++.+|.
T Consensus 174 --~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~ 247 (275)
T 1xnf_A 174 --SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLS---LGDLDSATALFKLAVANNVH 247 (275)
T ss_dssp --SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHTTCCT
T ss_pred --CCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHH---cCCHHHHHHHHHHHHhCCch
Confidence 344444444 677778888889999998887 44442 4677888888999 99999999999999999987
Q ss_pred CCchHHHHHHHHHhcCCchHHHHHH
Q 048578 435 NDGNYVLMSNIYAAKAQWDDAGKMR 459 (519)
Q Consensus 435 ~~~~~~~l~~~~~~~g~~~~A~~~~ 459 (519)
+... ...++...|++++|.+.+
T Consensus 248 ~~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 NFVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TCHH---HHHHHHHHHHHHHC----
T ss_pred hHHH---HHHHHHHHHHHHhhHHHH
Confidence 6444 466788889999988776
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.3e-14 Score=129.11 Aligned_cols=242 Identities=11% Similarity=-0.012 Sum_probs=125.3
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCc--chhHHHHHHHHHHhcC
Q 048578 202 INGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIIL--NDKLGAALTDMYAKCG 279 (519)
Q Consensus 202 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g 279 (519)
...+...|++++|+..|++..+... .+...+..+..++...|+++.|...++.+.+.+..+ ....+..+..++...|
T Consensus 10 a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~ 88 (272)
T 3u4t_A 10 ADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKG 88 (272)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcc
Confidence 3344444444444444444443321 122233344444444444444444444444421111 1112444445555555
Q ss_pred CHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 048578 280 YIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYN 356 (519)
Q Consensus 280 ~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 356 (519)
++++|+..|++..+ .+..+|..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|...|++
T Consensus 89 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 167 (272)
T 3u4t_A 89 QDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVK 167 (272)
T ss_dssp CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555544422 234455555555666666666666666555431 22334455554233333466677776666
Q ss_pred cHHhcCCCCChhHHHHHHHHHHhcCC---hHHHHHHHHhC----CCCCC------HHHHHHHHHHHccccCCCCHHHHHH
Q 048578 357 MRRDYKVEPNVKHYGCLVDLLCRARL---LDEAYEVIRNM----PMEPN------AVLWGSLLTACASADDGANVELAEI 423 (519)
Q Consensus 357 ~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~----~~~p~------~~~~~~ll~~~~~~~~~~~~~~a~~ 423 (519)
+.+. .+.+...+..+..++...|+ +++|...+++. ...|+ ..++..+...+.. .|++++|..
T Consensus 168 a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~ 242 (272)
T 3u4t_A 168 VLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI---NRDKVKADA 242 (272)
T ss_dssp HHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH---TTCHHHHHH
T ss_pred HHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH---cCCHHHHHH
Confidence 6652 22335555666666666666 55566666555 11233 1456667777888 889999999
Q ss_pred HHHHHHhhCCCCCchHHHHHHHHHhcC
Q 048578 424 AMERLIKLEPFNDGNYVLMSNIYAAKA 450 (519)
Q Consensus 424 ~~~~~~~~~p~~~~~~~~l~~~~~~~g 450 (519)
.++++++.+|+++.++..+.......+
T Consensus 243 ~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 243 AWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 999999999988887777766655443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-13 Score=120.69 Aligned_cols=192 Identities=13% Similarity=-0.011 Sum_probs=93.7
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHH
Q 048578 196 VTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMY 275 (519)
Q Consensus 196 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 275 (519)
..+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|...++...+.. |.+...+..+..++
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~ 83 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAY 83 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 344445555555555555555555554432 2234444445555555555555555555555443 33344444445555
Q ss_pred Hhc-----------CCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048578 276 AKC-----------GYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTAC 341 (519)
Q Consensus 276 ~~~-----------g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 341 (519)
... |++++|+..|++..+ .+...+..+...+...|++++|+..|++..+.. .+...+..+..++
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~ 161 (217)
T 2pl2_A 84 VALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELY 161 (217)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred HHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHH
Confidence 444 555555555555432 234455555555666666666666666655544 4555555666666
Q ss_pred hccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 048578 342 SHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM 393 (519)
Q Consensus 342 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 393 (519)
...|++++|...|++..+. .+.+...+..+..++...|++++|.+.+++.
T Consensus 162 ~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 162 LSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC--------------
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666666666666666552 2334455555566666666666666555543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.59 E-value=7e-13 Score=118.80 Aligned_cols=207 Identities=14% Similarity=-0.047 Sum_probs=119.4
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHH
Q 048578 195 VVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDM 274 (519)
Q Consensus 195 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 274 (519)
...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~----------- 103 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SR----------- 103 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT-----------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cC-----------
Confidence 4456666666777777777777777666542 2234455555555555555555555555555432 11
Q ss_pred HHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHH
Q 048578 275 YAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPD-DVTLIAVLTACSHAGLIEKGKEI 353 (519)
Q Consensus 275 ~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~ 353 (519)
+...+..+...+...|++++|..+++++.+.+..|+ ...+..+..++...|++++|...
T Consensus 104 --------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (252)
T 2ho1_A 104 --------------------NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEY 163 (252)
T ss_dssp --------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --------------------cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 233444445555555555555555555554223333 33555666666666666666666
Q ss_pred HHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhh
Q 048578 354 FYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKL 431 (519)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~ 431 (519)
++++.+. .+.+...+..++..+...|++++|...++++ ...| +...+..+...+.. .|++++|.+.++++.+.
T Consensus 164 ~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 164 FEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKV---FEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHH
Confidence 6666652 2334556666666666667777776666665 3333 34455555556666 66777777777777777
Q ss_pred CCCCCchH
Q 048578 432 EPFNDGNY 439 (519)
Q Consensus 432 ~p~~~~~~ 439 (519)
.|.++...
T Consensus 239 ~p~~~~~~ 246 (252)
T 2ho1_A 239 YPGSLEYQ 246 (252)
T ss_dssp CTTSHHHH
T ss_pred CCCCHHHH
Confidence 76654443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.6e-12 Score=126.65 Aligned_cols=308 Identities=10% Similarity=-0.066 Sum_probs=218.2
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHHHHHhCCCCCchhHHHHHHHHH
Q 048578 95 STFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKSKDFNSVIHSLTRLITFY 174 (519)
Q Consensus 95 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 174 (519)
....||.+...+...|++++|++.|++..+. ..........+....+|+.+..+|
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~-------------------------~~~~~~~~~~~~~~~~~~nla~~y 104 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEEL-------------------------IQQEHADQAEIRSLVTWGNYAWVY 104 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------HHHHSGGGCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-------------------------HHhcCccccchHHHHHHHHHHHHH
Confidence 3567999999999999999999999988651 000000000223456788899999
Q ss_pred HhcCChHHHHHHHhcCCC-----------CchhHHHHHHHHHHHc--CChhHHHHHHHHHHhCCCCCC-HHHHHHHHHH-
Q 048578 175 CNFGDVKSAQLLFDQMTE-----------KNVVTWTAMINGHVKQ--KNYREGIDLFRKMRDSGVEVN-ELTLVSVLSA- 239 (519)
Q Consensus 175 ~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~- 239 (519)
...|++++|...+++..+ ....++..+..++... +++++|...|++..+.. |+ ...+..+..+
T Consensus 105 ~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~ 182 (472)
T 4g1t_A 105 YHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIAS 182 (472)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 999999999998877642 1234666666566554 57999999999998763 43 4444444444
Q ss_pred --HhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHh----cCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcC
Q 048578 240 --CANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAK----CGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHG 310 (519)
Q Consensus 240 --~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g 310 (519)
+...++.+.|...+++..+.+ +.+..++..+...+.. .|++++|.+.+++... .+..++..+...+...|
T Consensus 183 ~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~ 261 (472)
T 4g1t_A 183 YRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKD 261 (472)
T ss_dssp HHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTT
T ss_pred HHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcC
Confidence 345677888999999888875 4556666666555544 4677889999987643 46678889999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-------------------CcHHHHHHHHHHcHHhcCCCCChhHHH
Q 048578 311 CGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHA-------------------GLIEKGKEIFYNMRRDYKVEPNVKHYG 371 (519)
Q Consensus 311 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~ 371 (519)
++++|...+++..+.. +-+..++..+..+|... +..+.|...+++..+. .+.+...+.
T Consensus 262 ~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~ 338 (472)
T 4g1t_A 262 EPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA--NDNLFRVCS 338 (472)
T ss_dssp CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCHH
T ss_pred chHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--CCchhhhhh
Confidence 9999999999998753 33455666666555432 3466788888887763 344566788
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCCCHHH----HHHHHHH-HccccCCCCHHHHHHHHHHHHhhCCCCC
Q 048578 372 CLVDLLCRARLLDEAYEVIRNM-PMEPNAVL----WGSLLTA-CASADDGANVELAEIAMERLIKLEPFND 436 (519)
Q Consensus 372 ~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~~----~~~ll~~-~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 436 (519)
.+...|...|++++|.+.|++. .+.|+... +..+... ... .|++++|+..+++++++.|.+.
T Consensus 339 ~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ai~~y~kal~i~~~~~ 406 (472)
T 4g1t_A 339 ILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQ---MKCEDKAIHHFIEGVKINQKSR 406 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHT---SSCHHHHHHHHHHHHHSCCCCH
T ss_pred hHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHhcCcccH
Confidence 8999999999999999999987 55555432 2222222 334 7899999999999999999853
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.58 E-value=4.2e-13 Score=121.80 Aligned_cols=239 Identities=8% Similarity=-0.032 Sum_probs=191.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCC--C-chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHH
Q 048578 165 HSLTRLITFYCNFGDVKSAQLLFDQMTE--K-NVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVN--ELTLVSVLSA 239 (519)
Q Consensus 165 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~ 239 (519)
..+......+...|++++|...|++..+ | +...+..+..++...|++++|+..+++..+.+..++ ...|..+...
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 3455667788999999999999998855 3 455888999999999999999999999988432222 3458888999
Q ss_pred HhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHHcCChHHHH
Q 048578 240 CANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEK---NVCTWNSIIGGLAIHGCGEEAV 316 (519)
Q Consensus 240 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~ 316 (519)
+...|+++.|...++...+.. +.+..++..+..+|...|++++|...|++..+. +...|..+...+...+++++|.
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999976 556789999999999999999999999999763 5566777773455567999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCc---HHHHHHHHHHcHHhcCCCCC------hhHHHHHHHHHHhcCChHHHH
Q 048578 317 KMFWQMQMSGIKPDDVTLIAVLTACSHAGL---IEKGKEIFYNMRRDYKVEPN------VKHYGCLVDLLCRARLLDEAY 387 (519)
Q Consensus 317 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~ 387 (519)
..|+++.+.. +.+...+..+..++...|+ +++|...+++..+...-.|+ ...|..+...|...|++++|.
T Consensus 163 ~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 163 SSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999998753 3346688888888888888 88899998888774333344 257888999999999999999
Q ss_pred HHHHhC-CCCCCHH-HHHHH
Q 048578 388 EVIRNM-PMEPNAV-LWGSL 405 (519)
Q Consensus 388 ~~~~~~-~~~p~~~-~~~~l 405 (519)
+.+++. .+.|+.. .+..+
T Consensus 242 ~~~~~al~~~p~~~~a~~~l 261 (272)
T 3u4t_A 242 AAWKNILALDPTNKKAIDGL 261 (272)
T ss_dssp HHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHhcCccHHHHHHHh
Confidence 999998 5566543 44333
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.57 E-value=1.7e-13 Score=129.79 Aligned_cols=250 Identities=10% Similarity=-0.001 Sum_probs=178.9
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC-hHHHHHHHHHHHHcCCCcchhHHHHHHH
Q 048578 195 VVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGA-SELGKWVHEFVNKNCIILNDKLGAALTD 273 (519)
Q Consensus 195 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 273 (519)
...|+.+..++.+.|++++|+..|++..... +-+...|..+..++...|+ +++|...++++.+.+ +.+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 3456677777777788888888887777653 2245667777777777775 778877777777765 456677777777
Q ss_pred HHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCcHHH
Q 048578 274 MYAKCGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSH-AGLIEK 349 (519)
Q Consensus 274 ~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~-~g~~~~ 349 (519)
++...|++++|+..|+++.+ .+..+|..+..++...|++++|+..++++++.. +-+...|+.+..++.. .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 77777888888777777744 356778888888888888888888888887753 3355678888888877 555466
Q ss_pred H-----HHHHHHcHHhcCCCCChhHHHHHHHHHHhcC--ChHHHHHHHHhCCCCC-CHHHHHHHHHHHccccCC-----C
Q 048578 350 G-----KEIFYNMRRDYKVEPNVKHYGCLVDLLCRAR--LLDEAYEVIRNMPMEP-NAVLWGSLLTACASADDG-----A 416 (519)
Q Consensus 350 a-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~-----~ 416 (519)
| +..|++..+. .+-+...|..+..++...| ++++|++.+.++...| +...+..+...+...++. +
T Consensus 254 A~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 6 4777777762 3345677888888888877 5788888887774445 456677777777662100 2
Q ss_pred C-HHHHHHHHHHH-HhhCCCCCchHHHHHHHHHhc
Q 048578 417 N-VELAEIAMERL-IKLEPFNDGNYVLMSNIYAAK 449 (519)
Q Consensus 417 ~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 449 (519)
+ +++|.++++++ .+.+|.....|..++..+...
T Consensus 332 ~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 332 DILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 3 58899999998 888998888888887766543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=8.6e-14 Score=123.95 Aligned_cols=142 Identities=14% Similarity=0.020 Sum_probs=69.7
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHH
Q 048578 297 CTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDL 376 (519)
Q Consensus 297 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 376 (519)
..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...
T Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~ 168 (243)
T 2q7f_A 92 TAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMC 168 (243)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHH
Confidence 334444444444555555555555544432 223344555555555555555555555555442 22334445555555
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 048578 377 LCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSN 444 (519)
Q Consensus 377 ~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 444 (519)
+...|++++|.+.++++ ...| +..++..+...+.. .|++++|...++++.+.+|+++.++..+..
T Consensus 169 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 235 (243)
T 2q7f_A 169 LANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAY---KENREKALEMLDKAIDIQPDHMLALHAKKL 235 (243)
T ss_dssp HHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCTTHHHHHHHHHHHHCTTCHHHHHHHTC
T ss_pred HHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH---ccCHHHHHHHHHHHHccCcchHHHHHHHHH
Confidence 55555555555555554 2222 34445555555555 555555555555555555555544444433
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.57 E-value=5.9e-13 Score=116.83 Aligned_cols=195 Identities=10% Similarity=-0.030 Sum_probs=111.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048578 265 DKLGAALTDMYAKCGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTAC 341 (519)
Q Consensus 265 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 341 (519)
...+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 33444445555555555555555544422 234455555555666666666666666655432 23444566666666
Q ss_pred hcc-CcHHHHHHHHHHcHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCC
Q 048578 342 SHA-GLIEKGKEIFYNMRRDYKVEP-NVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGAN 417 (519)
Q Consensus 342 ~~~-g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~ 417 (519)
... |++++|...++++.+ .+..| +...+..+..++...|++++|.+.++++ ...| +...+..+...+.. .|+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~---~~~ 162 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKML---AGQ 162 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH---HTC
T ss_pred HHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH---cCC
Confidence 666 666666666666655 22222 2445556666666666666666666655 2233 34555556666666 666
Q ss_pred HHHHHHHHHHHHhhCC-CCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048578 418 VELAEIAMERLIKLEP-FNDGNYVLMSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 418 ~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
+++|...++++.+..| .++..+..++..+...|+.++|..+++.+.+
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 6666666666666666 6666666666666666666666666666654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.56 E-value=1.6e-13 Score=130.02 Aligned_cols=229 Identities=10% Similarity=0.007 Sum_probs=195.0
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCC-HHHHHHHHhhcCC---CChhhHHHHHHH
Q 048578 230 ELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGY-IEEALRVFKIVLE---KNVCTWNSIIGG 305 (519)
Q Consensus 230 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~---~~~~~~~~l~~~ 305 (519)
...|..+..++.+.|+++.|...++.+++.. +-+...|..+..++...|+ +++|+..|+++.+ .+..+|+.+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3567777788889999999999999999986 6678899999999999997 9999999999865 367889999999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHh-cCChH
Q 048578 306 LAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCR-ARLLD 384 (519)
Q Consensus 306 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 384 (519)
+...|++++|+..|+++++.. +-+...|..+..++...|++++|+..|+++.+. -+.+...|+.+..++.. .|..+
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 999999999999999998853 446679999999999999999999999999983 34567899999999999 66658
Q ss_pred HH-----HHHHHhC-CCCC-CHHHHHHHHHHHccccCCC--CHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC-----
Q 048578 385 EA-----YEVIRNM-PMEP-NAVLWGSLLTACASADDGA--NVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKA----- 450 (519)
Q Consensus 385 ~A-----~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g----- 450 (519)
+| ++.|++. .+.| +...|..+...+.. .| ++++|.+.++++ +.+|+++.++..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~---~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD---RGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT---TCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHc---cCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhccccc
Confidence 87 4777776 5566 45678888888887 66 689999999998 888999999999999999875
Q ss_pred ----CchHHHHHHHHH-HhCC
Q 048578 451 ----QWDDAGKMRRLM-KERN 466 (519)
Q Consensus 451 ----~~~~A~~~~~~m-~~~~ 466 (519)
.+++|.++++++ .+.+
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~D 349 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKD 349 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHHhC
Confidence 358999999998 5543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.1e-14 Score=136.92 Aligned_cols=262 Identities=13% Similarity=-0.009 Sum_probs=167.5
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhccCChHHHHHHHHHHHHc----C-CCcchhHHHH
Q 048578 200 AMINGHVKQKNYREGIDLFRKMRDSGVEVNE----LTLVSVLSACANLGASELGKWVHEFVNKN----C-IILNDKLGAA 270 (519)
Q Consensus 200 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~ 270 (519)
.+...+...|++++|...|++..+.+.. +. ..+..+...+...|+++.|...+++..+. + .+.....+..
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 3444555555555555555555544211 11 24444555555555555555555554432 1 1223345555
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCC---------ChhhHHHHHHHHHHcCC-----------------hHHHHHHHHHHHH
Q 048578 271 LTDMYAKCGYIEEALRVFKIVLEK---------NVCTWNSIIGGLAIHGC-----------------GEEAVKMFWQMQM 324 (519)
Q Consensus 271 l~~~~~~~g~~~~a~~~~~~~~~~---------~~~~~~~l~~~~~~~g~-----------------~~~a~~~~~~m~~ 324 (519)
+...|...|++++|...+++..+- ...++..+...+...|+ +++|+..+++..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 666666666666666666554321 22356666677777777 7777777776543
Q ss_pred C----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC-C
Q 048578 325 S----GIKPD-DVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPN----VKHYGCLVDLLCRARLLDEAYEVIRNM-P 394 (519)
Q Consensus 325 ~----g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~-~ 394 (519)
. +-.+. ..++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|.+.+++. .
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 1 11122 236777888888889999998888887662111111 236778888899999999999888876 1
Q ss_pred CC---CC----HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC------CCchHHHHHHHHHhcCCchHHHHHHHH
Q 048578 395 ME---PN----AVLWGSLLTACASADDGANVELAEIAMERLIKLEPF------NDGNYVLMSNIYAAKAQWDDAGKMRRL 461 (519)
Q Consensus 395 ~~---p~----~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (519)
+. .+ ..++..+...+.. .|++++|...++++++..+. ...++..++.+|.+.|++++|.+.+++
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTL---LHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 11 11 3567777778888 89999999999998876533 234888899999999999999999998
Q ss_pred HHhC
Q 048578 462 MKER 465 (519)
Q Consensus 462 m~~~ 465 (519)
..+.
T Consensus 369 al~~ 372 (411)
T 4a1s_A 369 HLQL 372 (411)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=7.3e-14 Score=124.43 Aligned_cols=198 Identities=12% Similarity=0.064 Sum_probs=155.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048578 264 NDKLGAALTDMYAKCGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTA 340 (519)
Q Consensus 264 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 340 (519)
....+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 445566677777888888888888887754 356778888889999999999999999988753 4467789999999
Q ss_pred HhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCH
Q 048578 341 CSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANV 418 (519)
Q Consensus 341 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~ 418 (519)
+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.++++ ...| +...+..+...+.. .|++
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~ 175 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLAN---EGML 175 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---HTCC
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH---cCCH
Confidence 99999999999999999883 3456788999999999999999999999988 4344 57788888888999 9999
Q ss_pred HHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 419 ELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 419 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
++|...++++.+..|.++.++..++.+|...|++++|.+.+++..+...
T Consensus 176 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 176 DEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence 9999999999999999999999999999999999999999999987543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.56 E-value=8.9e-13 Score=118.14 Aligned_cols=194 Identities=11% Similarity=-0.025 Sum_probs=141.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCC---CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048578 164 IHSLTRLITFYCNFGDVKSAQLLFDQMTE---KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSAC 240 (519)
Q Consensus 164 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 240 (519)
...+..+...+...|++++|...|+++.+ .+...+..+..++...|++++|.+.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 57788899999999999999999998764 467789999999999999999999999998764 33667788888888
Q ss_pred hccCChHHHHHHHHHHHHcCC-CcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHH
Q 048578 241 ANLGASELGKWVHEFVNKNCI-ILNDKLGAALTDMYAKCGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAV 316 (519)
Q Consensus 241 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~ 316 (519)
...|++++|..+++.+.+.+. +.+...+..+..++...|++++|...++++.+ .+...+..+...+...|++++|.
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 888999999988888877322 33455666667777777777777777666532 24455666666666666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHH
Q 048578 317 KMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRR 359 (519)
Q Consensus 317 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 359 (519)
..++++.+.. +.+...+..+...+...|++++|..+++.+.+
T Consensus 196 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 196 QYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6666665432 33444555666666666666666666666655
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.3e-12 Score=114.69 Aligned_cols=209 Identities=11% Similarity=-0.044 Sum_probs=131.7
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHH
Q 048578 195 VVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDM 274 (519)
Q Consensus 195 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 274 (519)
...|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|+++.|...++.+.+.. +
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~------------ 73 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-P------------ 73 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T------------
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-C------------
Confidence 3455555666666666666666666655542 2234444445555555555555555555544432 1
Q ss_pred HHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHH
Q 048578 275 YAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIH-GCGEEAVKMFWQMQMSGIKPD-DVTLIAVLTACSHAGLIEKGKE 352 (519)
Q Consensus 275 ~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~ 352 (519)
.+..++..+...+... |++++|...++++.+.+..|+ ...+..+..++...|++++|..
T Consensus 74 -------------------~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 134 (225)
T 2vq2_A 74 -------------------DSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEA 134 (225)
T ss_dssp -------------------TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -------------------CChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence 2344555566666666 777777777777665323343 3467777777777888888888
Q ss_pred HHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC--CHHHHHHHHHHHccccCCCCHHHHHHHHHHHH
Q 048578 353 IFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP--NAVLWGSLLTACASADDGANVELAEIAMERLI 429 (519)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p--~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~ 429 (519)
.++++.+. .+.+...+..++.++...|++++|.+.++++ ...| +...+..+...+.. .|+.+.+..+++.+.
T Consensus 135 ~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 135 YLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKA---LGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh---cCcHHHHHHHHHHHH
Confidence 88777762 2334667777788888888888888888776 3233 45556666666677 788888888888888
Q ss_pred hhCCCCCchHHH
Q 048578 430 KLEPFNDGNYVL 441 (519)
Q Consensus 430 ~~~p~~~~~~~~ 441 (519)
+..|+++.....
T Consensus 210 ~~~p~~~~~~~~ 221 (225)
T 2vq2_A 210 ANFPYSEELQTV 221 (225)
T ss_dssp HHCTTCHHHHHH
T ss_pred HhCCCCHHHHHH
Confidence 888877655543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-13 Score=133.92 Aligned_cols=371 Identities=11% Similarity=0.017 Sum_probs=190.4
Q ss_pred cCchHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCCh---HHHHHHHhcCCCCCcchHHHHHHHHHhcC-----Ch
Q 048578 41 THLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQI---AYAHLVFNQIINPSTFAFNTVIRGYAEAG-----LG 112 (519)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~ll~~~~~~g-----~~ 112 (519)
.+...+.+.++...+.| ++..+..|..+|... |+. ++|...|++..+.++..+..+...+...+ ++
T Consensus 17 g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~---g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~ 90 (452)
T 3e4b_A 17 GDTVTAQQNYQQLAELG---YSEAQVGLADIQVGT---RDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEH 90 (452)
T ss_dssp HHHHHHHHHHHHHHHHT---CCTGGGTCC-------------------------------CHHHHHHHHHTC--CCHHHH
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcc---CCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCH
Confidence 34444455555555554 233334444455444 444 66666666665445555555555444444 55
Q ss_pred hHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHH---HHHHHhc
Q 048578 113 HRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKS---AQLLFDQ 189 (519)
Q Consensus 113 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~ 189 (519)
++|+..|++..+.|... .+ ..|...|...+..++ +.+.+..
T Consensus 91 ~~A~~~~~~Aa~~g~~~---A~---------------------------------~~Lg~~y~~~~~~~~~~~a~~~~~~ 134 (452)
T 3e4b_A 91 HEAESLLKKAFANGEGN---TL---------------------------------IPLAMLYLQYPHSFPNVNAQQQISQ 134 (452)
T ss_dssp HHHHHHHHHHHHTTCSS---CH---------------------------------HHHHHHHHHCGGGCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHH---HH---------------------------------HHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 66666666666644221 22 223333332222211 2222222
Q ss_pred CCC-CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC---ChHHHHHHHHHHHHcCCCcch
Q 048578 190 MTE-KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLG---ASELGKWVHEFVNKNCIILND 265 (519)
Q Consensus 190 ~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~ 265 (519)
... .++..+..+...|...+.++++......+.+.-...++..+..+...|...| +.++|...++...+.| +++.
T Consensus 135 a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a 213 (452)
T 3e4b_A 135 WQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTA 213 (452)
T ss_dssp HHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCH
T ss_pred HHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHH
Confidence 211 2344455555555555544333333222221111112225555555555566 6666666666666655 3344
Q ss_pred hHHHHHHHHHHhc----CCHHHHHHHHhhcCCCChhhHHHHHHH-H--HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048578 266 KLGAALTDMYAKC----GYIEEALRVFKIVLEKNVCTWNSIIGG-L--AIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVL 338 (519)
Q Consensus 266 ~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~ 338 (519)
..+..+..+|... +++++|..+|++....++..+..+... + ...+++++|..+|++..+.| +...+..+.
T Consensus 214 ~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg 290 (452)
T 3e4b_A 214 QRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLG 290 (452)
T ss_dssp HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 4444555555444 577777777777663355666666665 3 45788888888888888766 556666666
Q ss_pred HHHhccC-----cHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048578 339 TACSHAG-----LIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCR----ARLLDEAYEVIRNMPMEPNAVLWGSLLTAC 409 (519)
Q Consensus 339 ~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~ 409 (519)
..|. .| ++++|...|++.. +-+...+..|...|.. ..++++|..+|++.--.-+......|...|
T Consensus 291 ~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y 364 (452)
T 3e4b_A 291 KLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLF 364 (452)
T ss_dssp HHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHH
T ss_pred HHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHH
Confidence 6666 45 8888888888775 3456677777777766 348888998888871111223334444444
Q ss_pred cc-ccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH--HhcCCchHHHHHHHHHHhC
Q 048578 410 AS-ADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIY--AAKAQWDDAGKMRRLMKER 465 (519)
Q Consensus 410 ~~-~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~A~~~~~~m~~~ 465 (519)
.. .+-..+.++|..+++++.+.++.+ +...+..+. ...++.++|.++.++-+..
T Consensus 365 ~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 365 SQGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HSCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 32 111458999999999988887543 333333332 2334667777777766543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.1e-13 Score=131.50 Aligned_cols=269 Identities=12% Similarity=0.036 Sum_probs=127.5
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-c----hhHHHHHHHHHHHcCChhHHHHHHHHHHhC----CCCC-CH
Q 048578 163 VIHSLTRLITFYCNFGDVKSAQLLFDQMTE--K-N----VVTWTAMINGHVKQKNYREGIDLFRKMRDS----GVEV-NE 230 (519)
Q Consensus 163 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~ 230 (519)
....+......+...|++++|...|++..+ | + ...|..+...+...|++++|...+++.... +-.| ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 344455566667777777777777766543 2 2 235666666777777777777777665432 1111 12
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcCC-----CcchhHHHHHHHHHHhcCC--------------------HHHHH
Q 048578 231 LTLVSVLSACANLGASELGKWVHEFVNKNCI-----ILNDKLGAALTDMYAKCGY--------------------IEEAL 285 (519)
Q Consensus 231 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~--------------------~~~a~ 285 (519)
.++..+...+...|+++.|...++...+... .....++..+...|...|+ +++|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 3455555566666666666666666554210 0112345555555555555 55555
Q ss_pred HHHhhcCC-----C----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHhccCcHHHHH
Q 048578 286 RVFKIVLE-----K----NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSG-IKPD----DVTLIAVLTACSHAGLIEKGK 351 (519)
Q Consensus 286 ~~~~~~~~-----~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g-~~p~----~~~~~~l~~~~~~~g~~~~a~ 351 (519)
..+++..+ . ...++..+...+...|++++|...+++..+.. -.++ ..++..+...+...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 55544321 0 11234444444555555555555555443210 0011 114444444455555555555
Q ss_pred HHHHHcHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHccccCCCCHH
Q 048578 352 EIFYNMRRDYKVEPN----VKHYGCLVDLLCRARLLDEAYEVIRNM----PMEPN----AVLWGSLLTACASADDGANVE 419 (519)
Q Consensus 352 ~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~p~----~~~~~~ll~~~~~~~~~~~~~ 419 (519)
..+++..+...-.++ ..++..+...|...|++++|.+.+++. ...++ ..++..+...+.. .|+++
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~ 324 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTA---LGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---HTCHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH---cCCHH
Confidence 555444331000000 233444444455555555555554444 11111 2233334444444 44455
Q ss_pred HHHHHHHHHHhhCCC
Q 048578 420 LAEIAMERLIKLEPF 434 (519)
Q Consensus 420 ~a~~~~~~~~~~~p~ 434 (519)
+|...++++++..+.
T Consensus 325 ~A~~~~~~al~~~~~ 339 (406)
T 3sf4_A 325 QAMHFAEKHLEISRE 339 (406)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555554444443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.54 E-value=8.8e-14 Score=130.20 Aligned_cols=263 Identities=14% Similarity=0.009 Sum_probs=174.9
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHc----CC-CcchhHHHH
Q 048578 200 AMINGHVKQKNYREGIDLFRKMRDSGVEVN----ELTLVSVLSACANLGASELGKWVHEFVNKN----CI-ILNDKLGAA 270 (519)
Q Consensus 200 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ 270 (519)
.....+...|++++|...|+++.+.... + ...+..+...+...|+++.|...++...+. +. +....++..
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 3444555666666666666666554211 2 234555555566666666666666554432 11 122445566
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC-----CC----hhhHHHHHHHHHHcCC--------------------hHHHHHHHHH
Q 048578 271 LTDMYAKCGYIEEALRVFKIVLE-----KN----VCTWNSIIGGLAIHGC--------------------GEEAVKMFWQ 321 (519)
Q Consensus 271 l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~--------------------~~~a~~~~~~ 321 (519)
+...|...|++++|...+++..+ .+ ..++..+...+...|+ +++|...+++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 66677777777777777666532 11 2356667777777777 7888877777
Q ss_pred HHHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHh
Q 048578 322 MQMS----GIKPD-DVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPN----VKHYGCLVDLLCRARLLDEAYEVIRN 392 (519)
Q Consensus 322 m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~ 392 (519)
.... +..|. ...+..+...+...|++++|...+++..+...-.++ ..++..+...+...|++++|.+.+++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5431 11121 236778888889999999999999887652111111 33778888999999999999999887
Q ss_pred C-CC---CCC----HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCC------CchHHHHHHHHHhcCCchHHHHH
Q 048578 393 M-PM---EPN----AVLWGSLLTACASADDGANVELAEIAMERLIKLEPFN------DGNYVLMSNIYAAKAQWDDAGKM 458 (519)
Q Consensus 393 ~-~~---~p~----~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~ 458 (519)
. .+ .++ ..++..+...+.. .|++++|...++++++..+.. ..++..++.+|.+.|++++|.+.
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTL---LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHH---hcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 6 11 112 4467777778888 999999999999998765432 44788999999999999999999
Q ss_pred HHHHHhCC
Q 048578 459 RRLMKERN 466 (519)
Q Consensus 459 ~~~m~~~~ 466 (519)
+++..+..
T Consensus 326 ~~~a~~~~ 333 (338)
T 3ro2_A 326 AEKHLEIS 333 (338)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 99987643
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=6.2e-12 Score=114.17 Aligned_cols=231 Identities=9% Similarity=-0.047 Sum_probs=125.5
Q ss_pred chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHcCCCcchhHHH
Q 048578 194 NVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACAN----LGASELGKWVHEFVNKNCIILNDKLGA 269 (519)
Q Consensus 194 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 269 (519)
++.++..+...+...|++++|...|++..+.+ +...+..+...+.. .+++++|...+++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 44556666666667777777777776666532 33455555555555 666666666666655543 334444
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cC
Q 048578 270 ALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSH----AG 345 (519)
Q Consensus 270 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g 345 (519)
.+..+|.... ...+++++|+..|++..+.+ +...+..+...|.. .+
T Consensus 79 ~lg~~~~~g~---------------------------~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~ 128 (273)
T 1ouv_A 79 LLGNLYYSGQ---------------------------GVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTR 128 (273)
T ss_dssp HHHHHHHHTS---------------------------SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCC
T ss_pred HHHHHHhCCC---------------------------CcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCccc
Confidence 4444444400 00455555555555554433 34445555555555 55
Q ss_pred cHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhC-CCCCCHHHHHHHHHHHcc-ccCCCCHH
Q 048578 346 LIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCR----ARLLDEAYEVIRNM-PMEPNAVLWGSLLTACAS-ADDGANVE 419 (519)
Q Consensus 346 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~-~~~~~~~~ 419 (519)
++++|...|++..+. + +...+..+...|.. .+++++|...|++. .. .+...+..+...+.. .+..++++
T Consensus 129 ~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~g~~~~~~~~ 203 (273)
T 1ouv_A 129 DFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-KDSPGCFNAGNMYHHGEGATKNFK 203 (273)
T ss_dssp CHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTCSSCCCHH
T ss_pred CHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCccHH
Confidence 555555555555541 2 33444455555555 55555555555554 11 123333333333322 11145677
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHHh----cCCchHHHHHHHHHHhCCC
Q 048578 420 LAEIAMERLIKLEPFNDGNYVLMSNIYAA----KAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 420 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 467 (519)
+|...++++.+.+| +.++..++.+|.. .+++++|.+.+++..+.|.
T Consensus 204 ~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 204 EALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 77777777766654 4566677777777 7777777777777766554
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=6.6e-12 Score=114.00 Aligned_cols=218 Identities=10% Similarity=-0.055 Sum_probs=147.0
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhcCCCC-chhHHHHHHHHHHH----cCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 048578 162 SVIHSLTRLITFYCNFGDVKSAQLLFDQMTEK-NVVTWTAMINGHVK----QKNYREGIDLFRKMRDSGVEVNELTLVSV 236 (519)
Q Consensus 162 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 236 (519)
-+...+..+...|...|++++|...|++..++ +..++..+...|.. .+++++|...|++..+.+ +...+..+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 35667888899999999999999999988764 56678889999999 999999999999999876 67888888
Q ss_pred HHHHhc----cCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHh----cCCHHHHHHHHhhcCCC-ChhhHHHHHHHHH
Q 048578 237 LSACAN----LGASELGKWVHEFVNKNCIILNDKLGAALTDMYAK----CGYIEEALRVFKIVLEK-NVCTWNSIIGGLA 307 (519)
Q Consensus 237 l~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~ 307 (519)
...+.. .+++++|...+++..+.+ +...+..+...|.. .+++++|+..|++..+. +..++..+...+.
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~ 157 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYD 157 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 888988 999999999999988865 45566666666666 66666666666655432 3444555555555
Q ss_pred H----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHh
Q 048578 308 I----HGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSH----AGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCR 379 (519)
Q Consensus 308 ~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (519)
. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+. + +...+..+..+|..
T Consensus 158 ~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 158 AGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL-E---NGGGCFNLGAMQYN 230 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHT
T ss_pred cCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC-C---CHHHHHHHHHHHHc
Confidence 5 555555555555555432 33444455555555 55555555555555441 1 13344444444444
Q ss_pred ----cCChHHHHHHHHh
Q 048578 380 ----ARLLDEAYEVIRN 392 (519)
Q Consensus 380 ----~~~~~~A~~~~~~ 392 (519)
.+++++|.+.|++
T Consensus 231 g~~~~~~~~~A~~~~~~ 247 (273)
T 1ouv_A 231 GEGVTRNEKQAIENFKK 247 (273)
T ss_dssp TSSSSCCSTTHHHHHHH
T ss_pred CCCcccCHHHHHHHHHH
Confidence 4444444444444
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-12 Score=111.34 Aligned_cols=167 Identities=16% Similarity=0.075 Sum_probs=141.7
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHH
Q 048578 295 NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLV 374 (519)
Q Consensus 295 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 374 (519)
+...|..+...+...|++++|+..|++..+.. +-+..++..+..++.+.|++++|...+...... .+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 56678888888899999999999999988753 335568888899999999999999999998873 345567778888
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCc
Q 048578 375 DLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQW 452 (519)
Q Consensus 375 ~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 452 (519)
..+...++++.|.+.+.+. ...| +...+..+...+.. .|++++|++.++++++.+|.++.+|..++.+|.+.|++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~---~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDS---MGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH---hCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCH
Confidence 8899999999999999887 4445 56678888888888 99999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhCCC
Q 048578 453 DDAGKMRRLMKERNI 467 (519)
Q Consensus 453 ~~A~~~~~~m~~~~~ 467 (519)
++|.+.|++..+.+.
T Consensus 158 ~~A~~~~~~al~~~p 172 (184)
T 3vtx_A 158 DEAVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHhCCc
Confidence 999999999887543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.5e-11 Score=120.01 Aligned_cols=332 Identities=10% Similarity=0.021 Sum_probs=199.1
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcC--CCChHHHHHHHhcCCC-CCcchHHHHHHHHHhcCChhHHHHHHHH
Q 048578 45 QFKQVHAQIIKASFDNRTISDTQLAKLIESLVN--SSQIAYAHLVFNQIIN-PSTFAFNTVIRGYAEAGLGHRGIQLYTQ 121 (519)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~~~~~A~~~~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 121 (519)
.+...++...+. ++..+..|..++..... .+++++|...|++... .+..++..+...|...+..+++.+.++.
T Consensus 56 ~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~ 131 (452)
T 3e4b_A 56 QAEATYRAAADT----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQ 131 (452)
T ss_dssp -------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHH
T ss_pred HHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 444555544433 56666677765555411 1278899999988754 3455777788877766554433333222
Q ss_pred HHhCCCCCCcchHHHHHHHHcCccchHHHHHHHHHhCCCCCchhHHHHHHHHHHhcC----ChHHHHHHHhcCCCCchhH
Q 048578 122 MIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFG----DVKSAQLLFDQMTEKNVVT 197 (519)
Q Consensus 122 m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~~ 197 (519)
+... .. ..+......+...|...+ +.+++..+++.....++.+
T Consensus 132 ~~~a-----------------------------~~----~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a 178 (452)
T 3e4b_A 132 ISQW-----------------------------QA----AGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDIC 178 (452)
T ss_dssp HHHH-----------------------------HH----HTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTH
T ss_pred HHHH-----------------------------HH----CCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHH
Confidence 2221 00 112233444445555555 3444555666666666668
Q ss_pred HHHHHHHHHHcC---ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc----CChHHHHHHHHHHHHcCCCcchhHHHH
Q 048578 198 WTAMINGHVKQK---NYREGIDLFRKMRDSGVEVNELTLVSVLSACANL----GASELGKWVHEFVNKNCIILNDKLGAA 270 (519)
Q Consensus 198 ~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~ 270 (519)
+..|...|...| +.++|++.|++..+.| .++...+..+...|... +++++|...|+... +-++..+..
T Consensus 179 ~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa----~g~~~a~~~ 253 (452)
T 3e4b_A 179 YVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA----PGYPASWVS 253 (452)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG----GGSTHHHHH
T ss_pred HHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc----CCCHHHHHH
Confidence 888888888888 8888888888888776 44555545566666554 68888888888876 334555666
Q ss_pred HHHH-H--HhcCCHHHHHHHHhhcCCC-ChhhHHHHHHHHHHcC-----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048578 271 LTDM-Y--AKCGYIEEALRVFKIVLEK-NVCTWNSIIGGLAIHG-----CGEEAVKMFWQMQMSGIKPDDVTLIAVLTAC 341 (519)
Q Consensus 271 l~~~-~--~~~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~g-----~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 341 (519)
+..+ | ...+++++|..+|++..+. +..++..+...|. .| ++++|..+|++.. .| +......|...|
T Consensus 254 Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y 328 (452)
T 3e4b_A 254 LAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIY 328 (452)
T ss_dssp HHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHH
Confidence 6665 3 4578888888888887654 5667777777776 55 8888988888877 33 555666666666
Q ss_pred hc----cCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHcc
Q 048578 342 SH----AGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCR----ARLLDEAYEVIRNM-PM-EPNAVLWGSLLTACAS 411 (519)
Q Consensus 342 ~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~ 411 (519)
.. ..++++|...|++..+. | +......|..+|.. ..+.++|..+|+.. .. .++.......+.....
T Consensus 329 ~~G~g~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~ 404 (452)
T 3e4b_A 329 RRGYLGKVYPQKALDHLLTAARN-G---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLT 404 (452)
T ss_dssp HTTTTSSCCHHHHHHHHHHHHTT-T---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCC
T ss_pred HCCCCCCcCHHHHHHHHHHHHhh-C---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 55 34889999999888772 3 34455666777664 45788888888877 21 2222222222222222
Q ss_pred ccCCCCHHHHHHHHHHHHh
Q 048578 412 ADDGANVELAEIAMERLIK 430 (519)
Q Consensus 412 ~~~~~~~~~a~~~~~~~~~ 430 (519)
.++.++|..+.++-.+
T Consensus 405 ---~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 405 ---PAQRAEGQRLVQQELA 420 (452)
T ss_dssp ---HHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHH
Confidence 4456666666666544
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.6e-13 Score=132.29 Aligned_cols=267 Identities=13% Similarity=0.013 Sum_probs=188.3
Q ss_pred chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHc----CC-Ccc
Q 048578 194 NVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVN----ELTLVSVLSACANLGASELGKWVHEFVNKN----CI-ILN 264 (519)
Q Consensus 194 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~ 264 (519)
....+......+...|++++|...|++..+.+.. + ...+..+...+...|+++.|...+++.... +. +..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3445666777888888888888888888776322 2 246677777888888888888888876543 21 223
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhhHHHHHHHHHHcCC--------------------hHHH
Q 048578 265 DKLGAALTDMYAKCGYIEEALRVFKIVLE-----KN----VCTWNSIIGGLAIHGC--------------------GEEA 315 (519)
Q Consensus 265 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~--------------------~~~a 315 (519)
..++..+...|...|++++|...+++..+ .+ ..++..+...+...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 55677788888888888888888877643 12 3467777788888888 8888
Q ss_pred HHHHHHHHH----CCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCC----hhHHHHHHHHHHhcCChHHH
Q 048578 316 VKMFWQMQM----SGIKPD-DVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPN----VKHYGCLVDLLCRARLLDEA 386 (519)
Q Consensus 316 ~~~~~~m~~----~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A 386 (519)
...+++..+ .+..|. ..++..+...+...|++++|...+++..+...-.++ ..++..+...|...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 888877643 121222 236777788888888888888888877652111122 23677888888888888888
Q ss_pred HHHHHhC-CC---CCC----HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCC------CchHHHHHHHHHhcCCc
Q 048578 387 YEVIRNM-PM---EPN----AVLWGSLLTACASADDGANVELAEIAMERLIKLEPFN------DGNYVLMSNIYAAKAQW 452 (519)
Q Consensus 387 ~~~~~~~-~~---~p~----~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~ 452 (519)
...+++. .+ .++ ..++..+...+.. .|++++|...++++.+..+.. ..++..++.+|...|++
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 323 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL---LQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNH 323 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHH---hCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 8888776 11 112 3466677777887 888888888888888764332 55788888888888888
Q ss_pred hHHHHHHHHHHh
Q 048578 453 DDAGKMRRLMKE 464 (519)
Q Consensus 453 ~~A~~~~~~m~~ 464 (519)
++|.+.+++..+
T Consensus 324 ~~A~~~~~~al~ 335 (406)
T 3sf4_A 324 DQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888877643
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.6e-13 Score=134.84 Aligned_cols=193 Identities=9% Similarity=-0.050 Sum_probs=157.0
Q ss_pred cchhHHHHHHHHHHhcCCH-HHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048578 263 LNDKLGAALTDMYAKCGYI-EEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVL 338 (519)
Q Consensus 263 ~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~ 338 (519)
.+...+..+..+|...|++ ++|++.|++..+ .+..+|..+...|...|++++|...|++..+. .|+...+..+.
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg 177 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLS 177 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHH
Confidence 3445555555555566666 666666655532 24567788888888889999999999988874 57778888899
Q ss_pred HHHhcc---------CcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhc--------CChHHHHHHHHhC-CCCC---
Q 048578 339 TACSHA---------GLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRA--------RLLDEAYEVIRNM-PMEP--- 397 (519)
Q Consensus 339 ~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~A~~~~~~~-~~~p--- 397 (519)
.++... |++++|...|++..+. .+.+...|..+..+|... |++++|++.|++. .+.|
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 255 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcc
Confidence 999998 9999999999999883 345678899999999998 9999999999988 5556
Q ss_pred -CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 048578 398 -NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLM 462 (519)
Q Consensus 398 -~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 462 (519)
+...|..+...+.. .|++++|...++++++.+|+++.++..++.++...|++++|.+.++++
T Consensus 256 ~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 256 SNPDLHLNRATLHKY---EESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp GCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 67788889999999 999999999999999999999999999999999999999999755443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=4.8e-13 Score=121.52 Aligned_cols=218 Identities=13% Similarity=0.009 Sum_probs=177.9
Q ss_pred hccCChHHHHHHHHHHHHcCC---CcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHH
Q 048578 241 ANLGASELGKWVHEFVNKNCI---ILNDKLGAALTDMYAKCGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEE 314 (519)
Q Consensus 241 ~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~ 314 (519)
...|++++|...++.+.+... +.+..++..+..++...|++++|...|+++.+ .+..+|..+...+...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 345789999999999988642 23567888999999999999999999998854 367889999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-
Q 048578 315 AVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM- 393 (519)
Q Consensus 315 a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~- 393 (519)
|...++++.+.. +.+...+..+..++...|++++|...|+++.+. .|+.......+..+...|++++|...+++.
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999998753 335678999999999999999999999999873 344444445555667789999999999776
Q ss_pred -CCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC----CCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048578 394 -PMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPF----NDGNYVLMSNIYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 394 -~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
...++...+ .++..+.. .++.++|...++++.+..|. ++..+..++.+|.+.|++++|...+++..+.+
T Consensus 172 ~~~~~~~~~~-~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 172 EKSDKEQWGW-NIVEFYLG---NISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHSCCCSTHH-HHHHHHTT---SSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hcCCcchHHH-HHHHHHHH---hcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 223333344 36666777 77889999999998877653 36889999999999999999999999998765
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.3e-12 Score=123.34 Aligned_cols=285 Identities=9% Similarity=-0.018 Sum_probs=197.8
Q ss_pred HHhcCChHHHHHHHhcCCC--------CchhHHHHHHHH--HHHcCChhHHH-----------HHHHHHHhCCCCCCHHH
Q 048578 174 YCNFGDVKSAQLLFDQMTE--------KNVVTWTAMING--HVKQKNYREGI-----------DLFRKMRDSGVEVNELT 232 (519)
Q Consensus 174 ~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~--~~~~~~~~~a~-----------~~~~~m~~~~~~~~~~~ 232 (519)
+.+.+++++|..+++++.+ ++...|..++.. ....++.+.+. +.++.+.... .+...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchh
Confidence 4577888888888877643 233334444332 22223333444 5666654421 11111
Q ss_pred H------HHHHHHHhccCChHHHHHHHHHHHHc----CCCc-chhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC-
Q 048578 233 L------VSVLSACANLGASELGKWVHEFVNKN----CIIL-NDKLGAALTDMYAKCGYIEEALRVFKIVLE-----KN- 295 (519)
Q Consensus 233 ~------~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~- 295 (519)
+ ......+...|+++.|...+++..+. +.++ ...++..+..+|...|++++|...+.+..+ ++
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 1 12455577889999999999998764 2122 356788889999999999999988887643 11
Q ss_pred ----hhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHcHHh---cCC
Q 048578 296 ----VCTWNSIIGGLAIHGCGEEAVKMFWQMQMS----GIKPD-DVTLIAVLTACSHAGLIEKGKEIFYNMRRD---YKV 363 (519)
Q Consensus 296 ----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~ 363 (519)
..+++.+...|...|++++|+..+++..+. +-.+. ..++..+..+|...|++++|...+++..+. .+.
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 346788889999999999999999987642 11111 137888999999999999999999988761 123
Q ss_pred -CCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-----CCC-HHHHHHHHHHHccccCCCC---HHHHHHHHHHHHhhC
Q 048578 364 -EPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PM-----EPN-AVLWGSLLTACASADDGAN---VELAEIAMERLIKLE 432 (519)
Q Consensus 364 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~-----~p~-~~~~~~ll~~~~~~~~~~~---~~~a~~~~~~~~~~~ 432 (519)
+....++..+...|.+.|++++|.+.+++. .+ .|. ...+..+...+.. .|+ +++|..++++. ...
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~al~~~~~~-~~~ 335 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLS---GPDEEAIQGFFDFLESK-MLY 335 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTS---SCCHHHHHHHHHHHHHT-TCH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHC-cCH
Confidence 334667888999999999999999999887 11 222 2235556666777 777 77777777765 222
Q ss_pred CCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048578 433 PFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 433 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
|....++..++.+|...|++++|...+++..+
T Consensus 336 ~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 336 ADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44456888999999999999999999999864
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.46 E-value=9.9e-13 Score=127.17 Aligned_cols=268 Identities=12% Similarity=0.013 Sum_probs=206.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCC--Cc-h----hHHHHHHHHHHHcCChhHHHHHHHHHHhC----CC-CCCHH
Q 048578 164 IHSLTRLITFYCNFGDVKSAQLLFDQMTE--KN-V----VTWTAMINGHVKQKNYREGIDLFRKMRDS----GV-EVNEL 231 (519)
Q Consensus 164 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~ 231 (519)
...+..+...+...|++++|...|++..+ |+ . ..|..+...|...|++++|...+++..+. +- .....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 33455667788999999999999998765 32 2 46888899999999999999999887653 11 22345
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcC-----CCcchhHHHHHHHHHHhcCC-----------------HHHHHHHHh
Q 048578 232 TLVSVLSACANLGASELGKWVHEFVNKNC-----IILNDKLGAALTDMYAKCGY-----------------IEEALRVFK 289 (519)
Q Consensus 232 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~-----------------~~~a~~~~~ 289 (519)
.+..+...+...|+++.|...+++..+.. .+....++..+...|...|+ +++|.+.++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 67778888999999999999998877642 13345578888999999999 999999888
Q ss_pred hcCC-----C----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHH
Q 048578 290 IVLE-----K----NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGI-KPD----DVTLIAVLTACSHAGLIEKGKEIFY 355 (519)
Q Consensus 290 ~~~~-----~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~ 355 (519)
+..+ . ...++..+...+...|++++|...+++..+... .++ ...+..+..++...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 7643 1 234778888999999999999999999865310 112 2378888999999999999999999
Q ss_pred HcHHhcCCC----CChhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCC-CHHHHHHHHHHHccccCCCCHHHHHH
Q 048578 356 NMRRDYKVE----PNVKHYGCLVDLLCRARLLDEAYEVIRNM-------PMEP-NAVLWGSLLTACASADDGANVELAEI 423 (519)
Q Consensus 356 ~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~ 423 (519)
+..+...-. ....++..+...|...|++++|.+.+++. +..+ ...++..+...+.. .|++++|..
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~ 364 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSA---IGGHERALK 364 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH---TTCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH---hccHHHHHH
Confidence 887631111 12467888999999999999999999887 1111 13467778888888 999999999
Q ss_pred HHHHHHhhCCC
Q 048578 424 AMERLIKLEPF 434 (519)
Q Consensus 424 ~~~~~~~~~p~ 434 (519)
.++++.++.+.
T Consensus 365 ~~~~al~~~~~ 375 (411)
T 4a1s_A 365 YAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHCCH
T ss_pred HHHHHHHHHhh
Confidence 99999988754
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.44 E-value=4.4e-11 Score=110.58 Aligned_cols=218 Identities=8% Similarity=-0.039 Sum_probs=133.1
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHh-------ccCCh-------HHHHHHHHHHHHcCCCcchhHHHHHHHHHHh
Q 048578 212 REGIDLFRKMRDSGVEVNELTLVSVLSACA-------NLGAS-------ELGKWVHEFVNKNCIILNDKLGAALTDMYAK 277 (519)
Q Consensus 212 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 277 (519)
++|..+|++..... +-+...|..++..+. +.|++ ++|..++++..+.-.+.+...+..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45666666665542 234445555555443 23554 6666666666663223445566666666666
Q ss_pred cCCHHHHHHHHhhcCC--C-Chh-hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hccCcHHHHHH
Q 048578 278 CGYIEEALRVFKIVLE--K-NVC-TWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTAC-SHAGLIEKGKE 352 (519)
Q Consensus 278 ~g~~~~a~~~~~~~~~--~-~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~-~~~g~~~~a~~ 352 (519)
.|++++|..+|+++.+ | +.. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|+.++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 6777777777766643 2 233 66667777777777777777777776543 23333443333222 12577777777
Q ss_pred HHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C---CCC--CHHHHHHHHHHHccccCCCCHHHHHHHHH
Q 048578 353 IFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-P---MEP--NAVLWGSLLTACASADDGANVELAEIAME 426 (519)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~---~~p--~~~~~~~ll~~~~~~~~~~~~~~a~~~~~ 426 (519)
+|++..+. .+.+...|..++..+.+.|++++|..+|++. . +.| ....|..++..... .|+.+.|..+++
T Consensus 191 ~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~---~g~~~~a~~~~~ 265 (308)
T 2ond_A 191 IFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN---IGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHH---HSCHHHHHHHHH
T ss_pred HHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH---cCCHHHHHHHHH
Confidence 77777663 2335666777777777777777777777776 2 244 34566666766666 777777777777
Q ss_pred HHHhhCCCCC
Q 048578 427 RLIKLEPFND 436 (519)
Q Consensus 427 ~~~~~~p~~~ 436 (519)
++.+..|++.
T Consensus 266 ~a~~~~p~~~ 275 (308)
T 2ond_A 266 RRFTAFREEY 275 (308)
T ss_dssp HHHHHTTTTT
T ss_pred HHHHHccccc
Confidence 7777777644
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.6e-12 Score=119.13 Aligned_cols=273 Identities=12% Similarity=0.013 Sum_probs=144.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHHHHHhCCCCCchhHHHHHHHHHHhcCC
Q 048578 100 NTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGD 179 (519)
Q Consensus 100 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 179 (519)
......+...|++++|+..|+++.+.. |+... .....+..+...|...|+
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~----------------------------~~~~~~~~l~~~~~~~g~ 58 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLK----------------------------TLSAIYSQLGNAYFYLHD 58 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHH----------------------------HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhC--cccHH----------------------------HHHHHHHHHHHHHHHcCC
Confidence 334556667777888888777777631 21100 002344555566666777
Q ss_pred hHHHHHHHhcCCC---------CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhccCC
Q 048578 180 VKSAQLLFDQMTE---------KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGV-EVN----ELTLVSVLSACANLGA 245 (519)
Q Consensus 180 ~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~ll~~~~~~~~ 245 (519)
+++|...+++... ....++..+...+...|++++|...+++..+... .++ ..++..+...+...|+
T Consensus 59 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 138 (338)
T 3ro2_A 59 YAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 138 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence 7777776665432 1133556666667777777777777666543210 011 2244445555555555
Q ss_pred --------------------hHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC--ChhhHHHHH
Q 048578 246 --------------------SELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEK--NVCTWNSII 303 (519)
Q Consensus 246 --------------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~l~ 303 (519)
++.|...++..... ......+ ...++..+.
T Consensus 139 ~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~----------------------------~~~~~~~~~~~~~~~~l~ 190 (338)
T 3ro2_A 139 SFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSL----------------------------VTALGDRAAQGRAFGNLG 190 (338)
T ss_dssp TSSSSSCC----CCHHHHHHHHHHHHHHHHHHHH----------------------------HHHHTCHHHHHHHHHHHH
T ss_pred ccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHH----------------------------HHhcCCHHHHHHHHHHHH
Confidence 45554444443321 0000000 122344455
Q ss_pred HHHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCC----hhHHHHHH
Q 048578 304 GGLAIHGCGEEAVKMFWQMQMS----GIKP-DDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPN----VKHYGCLV 374 (519)
Q Consensus 304 ~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~ 374 (519)
..+...|++++|...+++..+. +..+ ...++..+...+...|++++|...+++..+...-.++ ..++..+.
T Consensus 191 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 270 (338)
T 3ro2_A 191 NTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLG 270 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Confidence 5555556666666655554321 1000 1125566666666667777777666665542111111 34566667
Q ss_pred HHHHhcCChHHHHHHHHhC-------CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCC
Q 048578 375 DLLCRARLLDEAYEVIRNM-------PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEP 433 (519)
Q Consensus 375 ~~~~~~~~~~~A~~~~~~~-------~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p 433 (519)
..|...|++++|...+++. +..+ ...++..+...+.. .|++++|...++++.+..+
T Consensus 271 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 271 NTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA---LGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHC--
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH---cCChHHHHHHHHHHHHHHH
Confidence 7777777777777776665 1111 12355566666777 7777777777777776654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.8e-13 Score=125.41 Aligned_cols=242 Identities=12% Similarity=0.028 Sum_probs=128.3
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc------C-
Q 048578 195 VVTWTAMINGHVKQKNYREGIDLFRKMRDS-------GVEVNELTLVSVLSACANLGASELGKWVHEFVNKN------C- 260 (519)
Q Consensus 195 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~- 260 (519)
..++..+...+...|++++|..+|+++.+. ........+..+...+...|+++.|...++.+.+. +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456778888888888888888888887762 12223455666677777777777777777776653 1
Q ss_pred CCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 048578 261 IILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPD-DVTLIAVLT 339 (519)
Q Consensus 261 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~ 339 (519)
.+....++..+...|...|++++|...++++.+. .++... +-.|+ ...+..+..
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~------------------------~~~~~~-~~~~~~~~~~~~la~ 161 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI------------------------REKVLG-KDHPDVAKQLNNLAL 161 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH------------------------HHHHHC-TTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH------------------------HHHhcC-CCChHHHHHHHHHHH
Confidence 1223344555555555555555555555443210 000000 11121 224555555
Q ss_pred HHhccCcHHHHHHHHHHcHHhc-----C-CCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C---------CCCCH----
Q 048578 340 ACSHAGLIEKGKEIFYNMRRDY-----K-VEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-P---------MEPNA---- 399 (519)
Q Consensus 340 ~~~~~g~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~---------~~p~~---- 399 (519)
.+...|++++|..+++++.+.. + .+....++..+..+|...|++++|.+.++++ . ..+..
T Consensus 162 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 241 (311)
T 3nf1_A 162 LCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIW 241 (311)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHH
Confidence 5555566666655555554410 0 1112334555556666666666666655554 1 11111
Q ss_pred ---HHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048578 400 ---VLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 400 ---~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
..+..+...+.. .+.+.++...++......|.++.++..++.+|.+.|++++|.+++++..+
T Consensus 242 ~~~~~~~~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 242 MHAEEREECKGKQKD---GTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHHHC----------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCchhh---HHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 111112222333 55566666777777777777778888888888888999998888887764
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.42 E-value=4.8e-12 Score=107.37 Aligned_cols=166 Identities=14% Similarity=0.044 Sum_probs=118.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048578 264 NDKLGAALTDMYAKCGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTA 340 (519)
Q Consensus 264 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 340 (519)
++.+|..+...|...|++++|++.|++..+ .+..++..+...+.+.|++++|...+++..... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 345566666666666666666666666533 255667777777777777777777777776543 3345566677777
Q ss_pred HhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCH
Q 048578 341 CSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANV 418 (519)
Q Consensus 341 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~ 418 (519)
+...++++.|...+.+..+ ..+.+...+..+..+|.+.|++++|++.|++. .+.| +..++..+...+.. .|++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~---~g~~ 157 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIA--LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEG---KGLR 157 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCH
T ss_pred HHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHH---CCCH
Confidence 7778888888888887776 23445667777888888888888888888777 4455 45677777777888 8888
Q ss_pred HHHHHHHHHHHhhCCCC
Q 048578 419 ELAEIAMERLIKLEPFN 435 (519)
Q Consensus 419 ~~a~~~~~~~~~~~p~~ 435 (519)
++|.+.++++++.+|.+
T Consensus 158 ~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 158 DEAVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHhCCccC
Confidence 88888888888887764
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.3e-11 Score=116.30 Aligned_cols=229 Identities=11% Similarity=0.035 Sum_probs=156.5
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCC------CcchhHHH
Q 048578 201 MINGHVKQKNYREGIDLFRKMRDS----GVEV-NELTLVSVLSACANLGASELGKWVHEFVNKNCI------ILNDKLGA 269 (519)
Q Consensus 201 li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~ 269 (519)
....+...|++++|...|++..+. +-.+ ...++..+...+...|+++.|...+.+..+... +....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 444556666666666666666543 1011 123555566666666777777666666654311 11234566
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHH
Q 048578 270 ALTDMYAKCGYIEEALRVFKIVLE-----KN----VCTWNSIIGGLAIHGCGEEAVKMFWQMQMS----GIKPD-DVTLI 335 (519)
Q Consensus 270 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~~~ 335 (519)
.+..+|...|++++|...|++..+ ++ ..++..+...|...|++++|...+++..+. +..|+ ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 777777778888888777776642 11 236777888888999999999998887651 32243 45788
Q ss_pred HHHHHHhccCcHHHHHHHHHHcHHhc---CCCCChhHHHHHHHHHHhcCC---hHHHHHHHHhCCCCCCH-HHHHHHHHH
Q 048578 336 AVLTACSHAGLIEKGKEIFYNMRRDY---KVEPNVKHYGCLVDLLCRARL---LDEAYEVIRNMPMEPNA-VLWGSLLTA 408 (519)
Q Consensus 336 ~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~p~~-~~~~~ll~~ 408 (519)
.+..++...|++++|...+++..+.. +.+.....+..+...|...|+ +++|+.++++.+..|+. ..+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 89999999999999999998876621 122223345678888888898 88999999998555543 366677777
Q ss_pred HccccCCCCHHHHHHHHHHHHhhC
Q 048578 409 CASADDGANVELAEIAMERLIKLE 432 (519)
Q Consensus 409 ~~~~~~~~~~~~a~~~~~~~~~~~ 432 (519)
|.. .|++++|...++++.+..
T Consensus 349 y~~---~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 349 YHE---RKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHH---TTCHHHHHHHHHHHHHHH
T ss_pred HHH---CCCHHHHHHHHHHHHHHH
Confidence 888 999999999999988764
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=7.4e-12 Score=128.05 Aligned_cols=162 Identities=14% Similarity=0.162 Sum_probs=138.4
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHH
Q 048578 296 VCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPD-DVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLV 374 (519)
Q Consensus 296 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 374 (519)
..+++.+...+.+.|++++|++.|++..+. .|+ ..++..+..+|.+.|++++|+..|++..+. -+-+...|..+.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg 84 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 456777888888888888888888888774 444 568888888999999999999999988872 234577888999
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCc
Q 048578 375 DLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQW 452 (519)
Q Consensus 375 ~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 452 (519)
.+|...|++++|++.|++. .+.| +...|..+...+.. .|++++|+..|+++++++|+++.++..++.+|...|++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~---~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKD---SGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence 9999999999999999887 6666 46688888889999 99999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHh
Q 048578 453 DDAGKMRRLMKE 464 (519)
Q Consensus 453 ~~A~~~~~~m~~ 464 (519)
++|.+.+++..+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999888764
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.38 E-value=4e-10 Score=107.25 Aligned_cols=261 Identities=11% Similarity=-0.032 Sum_probs=161.7
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCHH----HHHHHHHHHhccCChHHHHHHHHHHHHcCC---Cc--chhHHHHHH
Q 048578 202 INGHVKQKNYREGIDLFRKMRDSGVEVNEL----TLVSVLSACANLGASELGKWVHEFVNKNCI---IL--NDKLGAALT 272 (519)
Q Consensus 202 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~ 272 (519)
...+...|++++|...+++........+.. .+..+...+...|+++.|...+++...... .+ ....+..+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 344555666666666666655543211221 334444555566666666666666544210 01 122345566
Q ss_pred HHHHhcCCHHHHHHHHhhcCC-------C----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--C--CHHHHHHH
Q 048578 273 DMYAKCGYIEEALRVFKIVLE-------K----NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIK--P--DDVTLIAV 337 (519)
Q Consensus 273 ~~~~~~g~~~~a~~~~~~~~~-------~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~--p--~~~~~~~l 337 (519)
..+...|++++|.+.+++..+ + ....+..+...+...|++++|...+++....... + ...++..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 667777777777777765532 1 1234555667777888888888888877643211 1 23467777
Q ss_pred HHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHH-----HHHHHHHhcCChHHHHHHHHhC-CCCCC-----HHHHHHHH
Q 048578 338 LTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYG-----CLVDLLCRARLLDEAYEVIRNM-PMEPN-----AVLWGSLL 406 (519)
Q Consensus 338 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~A~~~~~~~-~~~p~-----~~~~~~ll 406 (519)
...+...|++++|...+++......-......+. ..+..+...|++++|...+++. ...|. ...+..+.
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 8888888999999888888765211111111121 2334477889999999988887 22221 23456666
Q ss_pred HHHccccCCCCHHHHHHHHHHHHhhCCC------CCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048578 407 TACASADDGANVELAEIAMERLIKLEPF------NDGNYVLMSNIYAAKAQWDDAGKMRRLMKER 465 (519)
Q Consensus 407 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 465 (519)
..+.. .|++++|...++++....+. ...++..++.++...|++++|...+++....
T Consensus 261 ~~~~~---~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 261 RAQIL---LGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHH---cCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 77888 88999999999888765422 1236677888889999999999988887653
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.38 E-value=2e-11 Score=103.27 Aligned_cols=162 Identities=16% Similarity=0.055 Sum_probs=109.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHH
Q 048578 299 WNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLC 378 (519)
Q Consensus 299 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (519)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..++..+.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 4444555555666666666666554432 234456666666666667777777766666652 2344566666777777
Q ss_pred hcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHH
Q 048578 379 RARLLDEAYEVIRNM-PME-PNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAG 456 (519)
Q Consensus 379 ~~~~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 456 (519)
..|++++|.+.++++ ... .+...+..+...+.. .|++++|...++++.+..|.++.++..++.++...|++++|.
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDN---LGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHH---cCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 777777777777666 222 345566667777777 788888888888888888888888888888888888888888
Q ss_pred HHHHHHHhCC
Q 048578 457 KMRRLMKERN 466 (519)
Q Consensus 457 ~~~~~m~~~~ 466 (519)
+.+++..+..
T Consensus 165 ~~~~~~~~~~ 174 (186)
T 3as5_A 165 PHFKKANELD 174 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHcC
Confidence 8888876543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.1e-10 Score=107.84 Aligned_cols=214 Identities=10% Similarity=0.011 Sum_probs=172.7
Q ss_pred HHHHHHHHHHHHcCCCcchhHHHHHHHHHH-------hcCCH-------HHHHHHHhhcCC---C-ChhhHHHHHHHHHH
Q 048578 247 ELGKWVHEFVNKNCIILNDKLGAALTDMYA-------KCGYI-------EEALRVFKIVLE---K-NVCTWNSIIGGLAI 308 (519)
Q Consensus 247 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~a~~~~~~~~~---~-~~~~~~~l~~~~~~ 308 (519)
+.|...|+++.... +.++..|..++..+. +.|++ ++|..+|++..+ | +...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 57778888888764 667778887777775 35775 899999998865 2 45689999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCH-H-HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHH-hcCChHH
Q 048578 309 HGCGEEAVKMFWQMQMSGIKPDD-V-TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLC-RARLLDE 385 (519)
Q Consensus 309 ~g~~~~a~~~~~~m~~~g~~p~~-~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~ 385 (519)
.|++++|..+|+++.+. .|+. . .|..++..+.+.|++++|..+|++..+. .+++...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999974 5543 3 7899999999999999999999999872 3345555554444322 3699999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhh---CCC-CCchHHHHHHHHHhcCCchHHHHHH
Q 048578 386 AYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKL---EPF-NDGNYVLMSNIYAAKAQWDDAGKMR 459 (519)
Q Consensus 386 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~ 459 (519)
|..+|++. ...| +...|..++..+.. .|++++|..+|+++++. .|. +...|..++..+.+.|++++|..++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~---~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSH---LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT---TCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHH---CCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999988 3344 56788888888888 99999999999999996 443 5678999999999999999999999
Q ss_pred HHHHhCCCc
Q 048578 460 RLMKERNIV 468 (519)
Q Consensus 460 ~~m~~~~~~ 468 (519)
+++.+....
T Consensus 265 ~~a~~~~p~ 273 (308)
T 2ond_A 265 KRRFTAFRE 273 (308)
T ss_dssp HHHHHHTTT
T ss_pred HHHHHHccc
Confidence 999876553
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.37 E-value=4.7e-11 Score=113.93 Aligned_cols=300 Identities=11% Similarity=0.062 Sum_probs=201.6
Q ss_pred CCchhHHHHHHHHH--HhcCChHHHHHHHhcCCC--------CchhHHHHHHHH--HHHcCChhHHH---------HHHH
Q 048578 161 NSVIHSLTRLITFY--CNFGDVKSAQLLFDQMTE--------KNVVTWTAMING--HVKQKNYREGI---------DLFR 219 (519)
Q Consensus 161 ~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~--~~~~~~~~~a~---------~~~~ 219 (519)
.|+..+-+.+-.-| ...+++++|..+++++.+ .+...|-.++.. ....+....+. ..++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 44445555555555 788999999888877532 233344444432 11112222222 5555
Q ss_pred HHHhCCCCCCH-H---HHHHHHHHHhccCChHHHHHHHHHHHHcCC-----CcchhHHHHHHHHHHhcCCHHHHHHHHhh
Q 048578 220 KMRDSGVEVNE-L---TLVSVLSACANLGASELGKWVHEFVNKNCI-----ILNDKLGAALTDMYAKCGYIEEALRVFKI 290 (519)
Q Consensus 220 ~m~~~~~~~~~-~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 290 (519)
.+.....+.+. . .+......+...|+++.|...+++..+... +....++..+..+|...|+++.|...+++
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 55432111111 1 122334456788999999999999876421 12355778889999999999999988877
Q ss_pred cCC-----CC-----hhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHH
Q 048578 291 VLE-----KN-----VCTWNSIIGGLAIHGCGEEAVKMFWQMQMS----GIKP-DDVTLIAVLTACSHAGLIEKGKEIFY 355 (519)
Q Consensus 291 ~~~-----~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~ 355 (519)
..+ ++ ..+++.+...+...|++++|.+.+++..+. +-.+ ...++..+..+|...|++++|...++
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 246 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 632 12 346778889999999999999999887642 2111 12478888999999999999999999
Q ss_pred HcHHhc---CCCCChhHHHHHHHHHHhcCChHHHHHHHHhC----CC--CCC-HHHHHHHHHHHccccCCCC---HHHHH
Q 048578 356 NMRRDY---KVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM----PM--EPN-AVLWGSLLTACASADDGAN---VELAE 422 (519)
Q Consensus 356 ~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~--~p~-~~~~~~ll~~~~~~~~~~~---~~~a~ 422 (519)
+..+.. +.+....++..+...|.+.|++++|...+++. .. .|. ...+..+...+.. .++ +++|.
T Consensus 247 ~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~---~~~~~~~~~al 323 (378)
T 3q15_A 247 KAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKE---TVDERKIHDLL 323 (378)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSS---SCCHHHHHHHH
T ss_pred HHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC---CCcHHHHHHHH
Confidence 887611 22334677888999999999999999999887 11 232 3345555555666 777 77777
Q ss_pred HHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048578 423 IAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 423 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
..+++. ...|.....+..++..|...|++++|...+++..+
T Consensus 324 ~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 324 SYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777762 12233456778999999999999999999998864
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.4e-12 Score=119.04 Aligned_cols=238 Identities=13% Similarity=0.029 Sum_probs=147.4
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCCC--------C---chhHHHHHHHHHHHcCChhHHHHHHHHHHhC------C
Q 048578 163 VIHSLTRLITFYCNFGDVKSAQLLFDQMTE--------K---NVVTWTAMINGHVKQKNYREGIDLFRKMRDS------G 225 (519)
Q Consensus 163 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~ 225 (519)
...++..+...+...|++++|..+|+++.+ . ...++..+...|...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 467788999999999999999999988764 1 2356888999999999999999999998764 2
Q ss_pred C-CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc------CC-CcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh
Q 048578 226 V-EVNELTLVSVLSACANLGASELGKWVHEFVNKN------CI-ILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVC 297 (519)
Q Consensus 226 ~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 297 (519)
- .....++..+...+...|++++|...++.+.+. +. +.....+..+...+...|++++|.+++
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~--------- 176 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYY--------- 176 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHH---------
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHH---------
Confidence 1 223567888888999999999999999988764 11 222334444555555555555555544
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHcHHhc------CCC
Q 048578 298 TWNSIIGGLAIHGCGEEAVKMFWQMQMS------GIKPD-DVTLIAVLTACSHAGLIEKGKEIFYNMRRDY------KVE 364 (519)
Q Consensus 298 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~------g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~ 364 (519)
+++.+. +..|+ ..++..+..++...|++++|...++++.+.. ...
T Consensus 177 ----------------------~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 177 ----------------------QRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp ----------------------HHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred ----------------------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 443321 11222 2255556666666666666666666655410 011
Q ss_pred CC-------hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC
Q 048578 365 PN-------VKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPF 434 (519)
Q Consensus 365 ~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (519)
+. ...+..+...+...+.+.+|...++.. ...| +..++..+...|.. .|++++|.+.+++++++.|.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRR---QGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHHC-
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHhhc
Confidence 11 112222333344455555666666665 3334 34567778888888 88999999999998887664
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.35 E-value=8.7e-09 Score=104.19 Aligned_cols=413 Identities=9% Similarity=-0.008 Sum_probs=270.0
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCC---hhHHHHHHH
Q 048578 47 KQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIIN---PSTFAFNTVIRGYAEAGL---GHRGIQLYT 120 (519)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~---~~~a~~~~~ 120 (519)
...++..+... +.|...|..++..+.+. +.++.+..+|+.+.. .+...|...+..-.+.|+ ++.+..+|+
T Consensus 52 i~~lE~~l~~n-p~d~~~W~~yi~~~~~~---~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 52 IGKLNDMIEEQ-PTDIFLYVKLLKHHVSL---KQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred HHHHHHHHHHC-cCCHHHHHHHHHHHHhc---CcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 44455555554 56888999999999888 899999999998843 456678888888888888 999999999
Q ss_pred HHHhCC-CCCCcchHHHHHHHHcCccc-----------hHHHHHHHHHhCCC-CC-chhHHHHHHHHHH---------hc
Q 048578 121 QMIGNG-LDPDSFTYPILLKACGDLRQ-----------VKGVHSLVVKSKDF-NS-VIHSLTRLITFYC---------NF 177 (519)
Q Consensus 121 ~m~~~g-~~p~~~~~~~ll~~~~~~~~-----------~~~~~~~~~~~~~~-~~-~~~~~~~l~~~~~---------~~ 177 (519)
+..... ..|+...|..-+.-..+.++ +.++++.....-+. .+ +...|...+.... ..
T Consensus 128 Ral~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq 207 (679)
T 4e6h_A 128 RCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQ 207 (679)
T ss_dssp HHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHH
Confidence 999854 24777777766654332221 33555554443335 44 4567777776543 23
Q ss_pred CChHHHHHHHhcCCC-Cc---hhHHHH---HHHHH----------HHcCChhHHHHHHHHHHhC--CCC-----------
Q 048578 178 GDVKSAQLLFDQMTE-KN---VVTWTA---MINGH----------VKQKNYREGIDLFRKMRDS--GVE----------- 227 (519)
Q Consensus 178 g~~~~A~~~~~~~~~-~~---~~~~~~---li~~~----------~~~~~~~~a~~~~~~m~~~--~~~----------- 227 (519)
++++.+..+|++... |. ..+|.. ..... -...+++.|...+.++... ++.
T Consensus 208 ~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~ 287 (679)
T 4e6h_A 208 QRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQAT 287 (679)
T ss_dssp HHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCC
T ss_pred hHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccch
Confidence 457788899988875 31 123322 21111 0011233444445443211 110
Q ss_pred ----C-----C---HHHHHHHHHHHhccC-------ChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHH-HH
Q 048578 228 ----V-----N---ELTLVSVLSACANLG-------ASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEAL-RV 287 (519)
Q Consensus 228 ----~-----~---~~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~ 287 (519)
| + ...|...+..--..+ ..+.+..+|++.+... +....+|-..+..+...|+.++|. .+
T Consensus 288 ~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~i 366 (679)
T 4e6h_A 288 ESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKY 366 (679)
T ss_dssp TTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHH
T ss_pred hccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 1 1 123444443322222 1233456777777763 567778888888888888888886 88
Q ss_pred HhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC---------CCCC------------HHHHHHHHHHHhc
Q 048578 288 FKIVLE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSG---------IKPD------------DVTLIAVLTACSH 343 (519)
Q Consensus 288 ~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g---------~~p~------------~~~~~~l~~~~~~ 343 (519)
|++... .+...|...+....+.|+++.|..+|+++.... -.|+ ...|...+....+
T Consensus 367 l~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR 446 (679)
T 4e6h_A 367 LKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKR 446 (679)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHH
Confidence 888754 345567777888888999999999999887531 0142 2357777777778
Q ss_pred cCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhc-CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHH
Q 048578 344 AGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRA-RLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVEL 420 (519)
Q Consensus 344 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~ 420 (519)
.|+.+.|..+|....+. ...+....|...+..-.+. ++.+.|..+|+.. ..-| +...|...+..... .|+.+.
T Consensus 447 ~~~l~~AR~vf~~A~~~-~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~---~~~~~~ 522 (679)
T 4e6h_A 447 IQGLAASRKIFGKCRRL-KKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIY---VNEESQ 522 (679)
T ss_dssp HHCHHHHHHHHHHHHHT-GGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HTCHHH
T ss_pred cCCHHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHh---CCCHHH
Confidence 88999999999998873 0112334444444444444 4589999999887 2223 45566677777777 788999
Q ss_pred HHHHHHHHHhhCCC---CCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 048578 421 AEIAMERLIKLEPF---NDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIV 468 (519)
Q Consensus 421 a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 468 (519)
|..+|+++++..|+ ....|...+..-.+.|+.+.+.++.+++.+....
T Consensus 523 AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 523 VKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999988773 4567888888888999999999999999876654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.32 E-value=8.2e-11 Score=103.53 Aligned_cols=205 Identities=13% Similarity=0.017 Sum_probs=152.5
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHH
Q 048578 228 VNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEK---NVCTWNSIIG 304 (519)
Q Consensus 228 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~ 304 (519)
.|+..+......+...|++++|...|+...+...+++...+..+..++...|++++|+..|++..+. +..+|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 3567788888889999999999999999998874367777777889999999999999999888543 4567888888
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCC---hhHHHHHH
Q 048578 305 GLAIHGCGEEAVKMFWQMQMSGIKPDD-------VTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPN---VKHYGCLV 374 (519)
Q Consensus 305 ~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~ 374 (519)
.+...|++++|+..+++..+.. +.+. ..|..+...+...|++++|+..|++..+ ..|+ ...|..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHH
Confidence 9999999999999999988742 2233 4577778888889999999999998876 2343 56777778
Q ss_pred HHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 048578 375 DLLCRARLLDEAYEVIRNM-PM-EPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIY 446 (519)
Q Consensus 375 ~~~~~~~~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 446 (519)
.+|...|+. .++++ .+ ..+...+...... . .+.+++|...++++++++|+++.+...+..+.
T Consensus 161 ~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~--~---~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 161 VLFYNNGAD-----VLRKATPLASSNKEKYASEKAK--A---DAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHH-----HHHHHGGGTTTCHHHHHHHHHH--H---HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHhcccCCHHHHHHHHHH--H---HHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 887665543 23332 11 2234444444322 2 45789999999999999999887777766554
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.30 E-value=2e-10 Score=96.96 Aligned_cols=168 Identities=10% Similarity=-0.009 Sum_probs=141.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048578 265 DKLGAALTDMYAKCGYIEEALRVFKIVLEK---NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTAC 341 (519)
Q Consensus 265 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 341 (519)
...+..+...+...|++++|...++++.+. +...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 445667788888999999999999988653 56778888999999999999999999988753 44667888899999
Q ss_pred hccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHH
Q 048578 342 SHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVE 419 (519)
Q Consensus 342 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~ 419 (519)
...|++++|...++++.+. .+.+...+..+...+...|++++|.+.++++ ...| +...+..+...+.. .|+++
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~---~~~~~ 161 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQ---MGRHE 161 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHH---cCCHH
Confidence 9999999999999999883 4456788889999999999999999999988 3334 56788888888999 99999
Q ss_pred HHHHHHHHHHhhCCCCCch
Q 048578 420 LAEIAMERLIKLEPFNDGN 438 (519)
Q Consensus 420 ~a~~~~~~~~~~~p~~~~~ 438 (519)
+|...++++.+..|.++..
T Consensus 162 ~A~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 162 EALPHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHHHHcCCCchhh
Confidence 9999999999988876543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.30 E-value=7.3e-11 Score=115.95 Aligned_cols=206 Identities=12% Similarity=-0.055 Sum_probs=110.3
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHh
Q 048578 211 YREGIDLFRKMRDSGVEVNELTLVSVLSACANLGAS-ELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFK 289 (519)
Q Consensus 211 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 289 (519)
++++++.+++..... +.+...+..+..++...|++ ++|...+++..+.. +.+...+..+..+|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344444444433321 22444555555555555555 55555555555543 3344555555555555666666666555
Q ss_pred hcCC--CChhhHHHHHHHHHHc---------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--------CcHHHH
Q 048578 290 IVLE--KNVCTWNSIIGGLAIH---------GCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHA--------GLIEKG 350 (519)
Q Consensus 290 ~~~~--~~~~~~~~l~~~~~~~---------g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~--------g~~~~a 350 (519)
+..+ |+...+..+...+... |++++|+..+++..+.. +-+...+..+..+|... |++++|
T Consensus 162 ~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 162 GALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 5532 3344455555555555 66666666666665532 22344566666666655 666666
Q ss_pred HHHHHHcHHhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHH
Q 048578 351 KEIFYNMRRDYKVE---PNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIA 424 (519)
Q Consensus 351 ~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~ 424 (519)
...|++..+. .+ .+...|..+..+|...|++++|.+.|++. .+.| +...+..+...+.. .|++++|.+.
T Consensus 241 ~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~---lg~~~eAi~~ 314 (474)
T 4abn_A 241 LSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEF---LSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 6666666552 12 24556666666666666666666666665 3334 23345555555555 5555555543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.30 E-value=2.5e-08 Score=100.81 Aligned_cols=396 Identities=9% Similarity=-0.002 Sum_probs=267.0
Q ss_pred CcccHHHHHHhc---cCchHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCC---hHHHHHHHhcCCC-----CCcc
Q 048578 29 KSHHHLPLLQKC---THLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQ---IAYAHLVFNQIIN-----PSTF 97 (519)
Q Consensus 29 ~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~---~~~A~~~~~~~~~-----~~~~ 97 (519)
|..++..++..+ .....++.+++.+... +|.....|...+..-.+. ++ ++.+..+|++... |++.
T Consensus 65 d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~---~~~~~~~~v~~lfeRal~~~~~~~sv~ 140 (679)
T 4e6h_A 65 DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDK---MEELDAAVIEPVLARCLSKELGNNDLS 140 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC-----CCCHHHHHHHHHHHTCSSSCCCCHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhh---CCcchHHHHHHHHHHHHHhcCCCCCHH
Confidence 666777777766 3455567888888866 577778888888887777 77 9999999999843 7777
Q ss_pred hHHHHHHHHHhcCCh--------hHHHHHHHHHHh-CCC-CCCc-chHHHHHHHHcC---------ccchHHHHHHHHHh
Q 048578 98 AFNTVIRGYAEAGLG--------HRGIQLYTQMIG-NGL-DPDS-FTYPILLKACGD---------LRQVKGVHSLVVKS 157 (519)
Q Consensus 98 ~~~~ll~~~~~~g~~--------~~a~~~~~~m~~-~g~-~p~~-~~~~~ll~~~~~---------~~~~~~~~~~~~~~ 157 (519)
.|...+.-..+.++. +.+.++|+.... .|. .|+. ..|...+.-... .++.+.+...+.+.
T Consensus 141 LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ra 220 (679)
T 4e6h_A 141 LWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTL 220 (679)
T ss_dssp HHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHH
Confidence 888887766665554 344578877665 466 5644 567666654332 11234444444444
Q ss_pred CCCCCc--hhHHHHHHHHHHh-------------cCChHHHHHHHhcC-------CC--Cc-------------------
Q 048578 158 KDFNSV--IHSLTRLITFYCN-------------FGDVKSAQLLFDQM-------TE--KN------------------- 194 (519)
Q Consensus 158 ~~~~~~--~~~~~~l~~~~~~-------------~g~~~~A~~~~~~~-------~~--~~------------------- 194 (519)
-.+|.. ..+|......--. ..+++.|...+..+ .. |.
T Consensus 221 L~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ 300 (679)
T 4e6h_A 221 LCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQ 300 (679)
T ss_dssp TTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHH
T ss_pred HhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHH
Confidence 323221 2333222111111 12233344444331 11 00
Q ss_pred -hhHHHHHHHHHHHcC-------ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHH-HHHHHHHHcCCCcch
Q 048578 195 -VVTWTAMINGHVKQK-------NYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGK-WVHEFVNKNCIILND 265 (519)
Q Consensus 195 -~~~~~~li~~~~~~~-------~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~ 265 (519)
...|...+..--..+ ..+.+..+|++.... ++-....|...+..+...|+.+.|. .+++..... +|.+.
T Consensus 301 ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~ 378 (679)
T 4e6h_A 301 QLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSA 378 (679)
T ss_dssp HHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCH
T ss_pred HHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCH
Confidence 134555554333322 124456778888775 3447778888888888889999996 999999875 35667
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCC-------------CC------------hhhHHHHHHHHHHcCChHHHHHHHH
Q 048578 266 KLGAALTDMYAKCGYIEEALRVFKIVLE-------------KN------------VCTWNSIIGGLAIHGCGEEAVKMFW 320 (519)
Q Consensus 266 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------------~~------------~~~~~~l~~~~~~~g~~~~a~~~~~ 320 (519)
..+-..+...-+.|++++|.++|+++.+ |+ ...|...+....+.|+.+.|..+|.
T Consensus 379 ~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~ 458 (679)
T 4e6h_A 379 VLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFG 458 (679)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7778888999999999999999998854 21 2357888888888999999999999
Q ss_pred HHHHC-CCCCCHHHHHHHHHHHhc-cCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 048578 321 QMQMS-GIKPDDVTLIAVLTACSH-AGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP 397 (519)
Q Consensus 321 ~m~~~-g~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p 397 (519)
+..+. + .+....|...+..-.+ .++.+.|..+|+...+. .+.+...|...++.....|+.+.|..+|+.. ...|
T Consensus 459 ~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 459 KCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred HHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 99876 2 2223344333333233 35589999999999985 4456667888899889999999999999997 3334
Q ss_pred ----CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCC
Q 048578 398 ----NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFND 436 (519)
Q Consensus 398 ----~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 436 (519)
....|...+..-.. .|+.+.+..+.+++.+..|+++
T Consensus 536 ~~~~~~~lw~~~~~fE~~---~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 536 DSHLLKMIFQKVIFFESK---VGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp STTHHHHHHHHHHHHHHH---TCCSHHHHHHHHHHHHHSTTCC
T ss_pred CHHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCc
Confidence 23578888888777 9999999999999999999864
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.28 E-value=8.8e-11 Score=103.31 Aligned_cols=190 Identities=12% Similarity=-0.075 Sum_probs=124.6
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHhhcCC----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 048578 263 LNDKLGAALTDMYAKCGYIEEALRVFKIVLE----KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPD-DVTLIAV 337 (519)
Q Consensus 263 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~l 337 (519)
.++..+......+...|++++|+..|++..+ ++...+..+..++...|++++|+..+++..+. .|+ ...+..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHH
Confidence 3456677777777778888888887776633 45556666777777778888888888777764 344 3467777
Q ss_pred HHHHhccCcHHHHHHHHHHcHHhcCCCCCh-------hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC--H-HHHHHHH
Q 048578 338 LTACSHAGLIEKGKEIFYNMRRDYKVEPNV-------KHYGCLVDLLCRARLLDEAYEVIRNM-PMEPN--A-VLWGSLL 406 (519)
Q Consensus 338 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~--~-~~~~~ll 406 (519)
..++...|++++|...|++..+. .+.+. ..|..+...+...|++++|++.|++. .+.|+ . ..+..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 77777778888888887777763 22233 44666777777777777777777776 56665 2 3444444
Q ss_pred HHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048578 407 TACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 407 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
..+.. .+...++++....+.++..|... .....+.+++|...+++..+..
T Consensus 161 ~~~~~--------~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 161 VLFYN--------NGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHH--------HHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHH--------HHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcC
Confidence 44433 33455666666665554443322 3344566799999999987744
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.3e-09 Score=103.94 Aligned_cols=227 Identities=13% Similarity=0.039 Sum_probs=150.2
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHcCC-----C-cchhHHH
Q 048578 201 MINGHVKQKNYREGIDLFRKMRDSGV-EVN----ELTLVSVLSACANLGASELGKWVHEFVNKNCI-----I-LNDKLGA 269 (519)
Q Consensus 201 li~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~-~~~~~~~ 269 (519)
....+...|++++|...|++..+... .++ ..++..+...+...|+++.|...+++..+... . ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 33445566677777777666654310 111 23455566666667777777666666554210 1 1244566
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHHHH
Q 048578 270 ALTDMYAKCGYIEEALRVFKIVLE-----KN----VCTWNSIIGGLAIHGCGEEAVKMFWQMQM-----SGIKPDDVTLI 335 (519)
Q Consensus 270 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~~ 335 (519)
.+..+|...|++++|.+.|++..+ ++ ..++..+...+...|++++|...+++..+ .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 677777777777777777766533 11 24567777888888888888888888765 32 22356788
Q ss_pred HHHHHHhccCcHHHHHHHHHHcHHhcCC---CCChhHHHHHHHHHHhcCC---hHHHHHHHHhCCCCCCH-HHHHHHHHH
Q 048578 336 AVLTACSHAGLIEKGKEIFYNMRRDYKV---EPNVKHYGCLVDLLCRARL---LDEAYEVIRNMPMEPNA-VLWGSLLTA 408 (519)
Q Consensus 336 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~p~~-~~~~~ll~~ 408 (519)
.+..++.+.|++++|...+++..+...- +.....+..+...+...++ +.+|+..+++.+..|+. ..+..+...
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence 8888899999999999999888773222 2223455666677777788 88888888887544433 355667777
Q ss_pred HccccCCCCHHHHHHHHHHHHhh
Q 048578 409 CASADDGANVELAEIAMERLIKL 431 (519)
Q Consensus 409 ~~~~~~~~~~~~a~~~~~~~~~~ 431 (519)
|.. .|++++|...++++.+.
T Consensus 346 y~~---~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 346 FES---SCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHH---TTCHHHHHHHHHHHHHH
T ss_pred HHH---CCCHHHHHHHHHHHHHH
Confidence 888 89999999999988764
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.23 E-value=1.6e-09 Score=103.13 Aligned_cols=263 Identities=9% Similarity=-0.056 Sum_probs=182.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCC----Cch----hHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCCH----HHH
Q 048578 167 LTRLITFYCNFGDVKSAQLLFDQMTE----KNV----VTWTAMINGHVKQKNYREGIDLFRKMRDSGV-EVNE----LTL 233 (519)
Q Consensus 167 ~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~----~~~ 233 (519)
.......+...|++++|...+++... .+. .+++.+...+...|++++|...+++...... ..+. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 33445567788999999998876532 222 2466677788889999999999988765311 1122 235
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHc----CCC--c-chhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C------Chhh
Q 048578 234 VSVLSACANLGASELGKWVHEFVNKN----CII--L-NDKLGAALTDMYAKCGYIEEALRVFKIVLE--K------NVCT 298 (519)
Q Consensus 234 ~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~------~~~~ 298 (519)
..+...+...|+++.|...++...+. +.+ | ....+..+...+...|++++|...+++... + ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 56677788899999999998887653 221 2 345666788889999999999999987632 1 1245
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHH----HHHHHHhccCcHHHHHHHHHHcHHhcCCCC---ChhH
Q 048578 299 WNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPD--DVTLI----AVLTACSHAGLIEKGKEIFYNMRRDYKVEP---NVKH 369 (519)
Q Consensus 299 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~ 369 (519)
+..+...+...|++++|...+++.....-.++ ..... ..+..+...|++++|...++..... ...+ ....
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~ 255 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP-EFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTTCGGGHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC-CCCcchhhHHH
Confidence 77788888999999999999998865311111 11111 2334477899999999999988762 2111 1235
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-------CCCCCHH-HHHHHHHHHccccCCCCHHHHHHHHHHHHhhCC
Q 048578 370 YGCLVDLLCRARLLDEAYEVIRNM-------PMEPNAV-LWGSLLTACASADDGANVELAEIAMERLIKLEP 433 (519)
Q Consensus 370 ~~~l~~~~~~~~~~~~A~~~~~~~-------~~~p~~~-~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p 433 (519)
+..+...+...|++++|...+++. +..++.. .+..+..++.. .|+.++|...++++....+
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQ---AGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHhc
Confidence 667888999999999999998876 2111222 45555666777 8999999999999887653
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.22 E-value=6.7e-11 Score=107.51 Aligned_cols=167 Identities=14% Similarity=0.104 Sum_probs=86.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHcHHhc-----C-CC
Q 048578 298 TWNSIIGGLAIHGCGEEAVKMFWQMQMS------GIKPD-DVTLIAVLTACSHAGLIEKGKEIFYNMRRDY-----K-VE 364 (519)
Q Consensus 298 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~------g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~-~~ 364 (519)
++..+...+...|++++|...+++..+. .-.|+ ..++..+...+...|++++|...+++..+.. + .+
T Consensus 87 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 166 (283)
T 3edt_B 87 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP 166 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4444555555555555555555554432 11122 3356666667777777777777776665520 1 11
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhC-C---------CCCCH-HHHHHHHHHHcccc---CCCCHHHHHHHHHHHHh
Q 048578 365 PNVKHYGCLVDLLCRARLLDEAYEVIRNM-P---------MEPNA-VLWGSLLTACASAD---DGANVELAEIAMERLIK 430 (519)
Q Consensus 365 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~---------~~p~~-~~~~~ll~~~~~~~---~~~~~~~a~~~~~~~~~ 430 (519)
....++..+..+|...|++++|.+.+++. . ..+.. ..+..+.......+ ....+..+...++....
T Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (283)
T 3edt_B 167 NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV 246 (283)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC
Confidence 23455666777777777777777776655 1 12211 12222222222200 12223333333333333
Q ss_pred hCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048578 431 LEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 431 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
..|....++..++.+|...|++++|..++++..+
T Consensus 247 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 247 DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344566788889999999999999998888765
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.19 E-value=4.9e-10 Score=102.58 Aligned_cols=226 Identities=13% Similarity=-0.008 Sum_probs=133.5
Q ss_pred ChHHHHHHHhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHhccCChHHHHHHH
Q 048578 179 DVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDS----GVEVN-ELTLVSVLSACANLGASELGKWVH 253 (519)
Q Consensus 179 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~ 253 (519)
++++|...|++. ...|...|++++|...|++.... |-.++ ..+|..+..+|...|++++|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 366666555443 55666777777777777665432 11111 234555555555555555555555
Q ss_pred HHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHc-CChHHHHHHHHHHHHC----CCC
Q 048578 254 EFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIH-GCGEEAVKMFWQMQMS----GIK 328 (519)
Q Consensus 254 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~----g~~ 328 (519)
++..+. +...|+...+ ..+++.+...|... |++++|+..|++..+. +-.
T Consensus 101 ~~Al~l---------------~~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~ 154 (292)
T 1qqe_A 101 ENAIQI---------------FTHRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV 154 (292)
T ss_dssp HHHHHH---------------HHHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHH---------------HHHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence 544432 1112222211 23466677777775 8888888888877542 101
Q ss_pred CC-HHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCCh-----hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-
Q 048578 329 PD-DVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNV-----KHYGCLVDLLCRARLLDEAYEVIRNM-PMEPNAV- 400 (519)
Q Consensus 329 p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~- 400 (519)
+. ..++..+...+...|++++|+..|++..+...-.+.. ..|..+..++...|++++|...|++. .+.|+..
T Consensus 155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 11 2467788888888899999999988887731111221 15677788888899999999999887 5555432
Q ss_pred -----HHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHH
Q 048578 401 -----LWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLM 442 (519)
Q Consensus 401 -----~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 442 (519)
.+..++.++. .++.+++++|...|+++.+++|.+...+..+
T Consensus 235 ~~~~~~l~~l~~~~~-~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~ 280 (292)
T 1qqe_A 235 SRESNFLKSLIDAVN-EGDSEQLSEHCKEFDNFMRLDKWKITILNKI 280 (292)
T ss_dssp ---HHHHHHHHHHHH-TTCTTTHHHHHHHHTTSSCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH-cCCHHHHHHHHHHhccCCccHHHHHHHHHHH
Confidence 2344455553 2337788888888888888777654443333
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.17 E-value=5e-09 Score=94.11 Aligned_cols=138 Identities=12% Similarity=0.011 Sum_probs=61.7
Q ss_pred HHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC-----ChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 048578 249 GKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEK-----NVCTWNSIIGGLAIHGCGEEAVKMFWQMQ 323 (519)
Q Consensus 249 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 323 (519)
+...+++....+ +++...+..+..++...|++++|++++.+.... +...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444444333 223333334555555555555555555554222 22344444555555555555555555554
Q ss_pred HCCCCC-----CHHHHHHHHHHH--hccC--cHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 048578 324 MSGIKP-----DDVTLIAVLTAC--SHAG--LIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRN 392 (519)
Q Consensus 324 ~~g~~p-----~~~~~~~l~~~~--~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 392 (519)
+. .| +..+...++.++ ...| +++.|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~ 236 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVEL 236 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 42 33 233444444332 1112 555555555555432 12211222222245555555555555543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=2.9e-10 Score=116.35 Aligned_cols=164 Identities=13% Similarity=0.105 Sum_probs=115.0
Q ss_pred CcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 048578 262 ILNDKLGAALTDMYAKCGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPD-DVTLIAV 337 (519)
Q Consensus 262 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~l 337 (519)
|-+...++.|..+|.+.|++++|++.|++..+ .+..+|..+..++.+.|++++|+..|++..+. .|+ ...|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 33455666677777777777777777766643 24566777777777777777777777777664 343 4577777
Q ss_pred HHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCC
Q 048578 338 LTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDG 415 (519)
Q Consensus 338 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~ 415 (519)
..++...|++++|++.|++..+. -+-+...|..+..+|...|++++|++.|++. .+.| +...+..+...+.. .
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~---~ 158 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQI---V 158 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH---T
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHh---c
Confidence 77777888888888888777762 2334667777788888888888888887776 5556 34567777777777 7
Q ss_pred CCHHHHHHHHHHHHhhC
Q 048578 416 ANVELAEIAMERLIKLE 432 (519)
Q Consensus 416 ~~~~~a~~~~~~~~~~~ 432 (519)
|++++|.+.+++++++.
T Consensus 159 g~~~~A~~~~~kal~l~ 175 (723)
T 4gyw_A 159 CDWTDYDERMKKLVSIV 175 (723)
T ss_dssp TCCTTHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC
Confidence 77777777777776543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.12 E-value=6e-09 Score=93.62 Aligned_cols=184 Identities=11% Similarity=-0.044 Sum_probs=111.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---C---hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC-HHHHH
Q 048578 264 NDKLGAALTDMYAKCGYIEEALRVFKIVLEK---N---VCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGI-KPD-DVTLI 335 (519)
Q Consensus 264 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~-~p~-~~~~~ 335 (519)
+...+..+...+.+.|++++|+..|+++.+. + ..++..+..++.+.|++++|+..|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 3445555566666666666666666666442 2 34455566666666666666666666655311 112 23455
Q ss_pred HHHHHHhc--------cCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHH
Q 048578 336 AVLTACSH--------AGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLT 407 (519)
Q Consensus 336 ~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~ 407 (519)
.+..++.. .|++++|...|+++.+.. +.+......+.......++. ...+..+..
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la~ 156 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKL---------------ARKQYEAAR 156 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHH---------------HHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHH---------------HHHHHHHHH
Confidence 55555555 666666666666665531 11222222111111000000 011345566
Q ss_pred HHccccCCCCHHHHHHHHHHHHhhCCCCC---chHHHHHHHHHhc----------CCchHHHHHHHHHHhCCC
Q 048578 408 ACASADDGANVELAEIAMERLIKLEPFND---GNYVLMSNIYAAK----------AQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 408 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~ 467 (519)
.+.. .|++++|...++++++..|+++ .++..++.+|... |++++|...++++.+...
T Consensus 157 ~~~~---~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 157 LYER---RELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHH---TTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHH---ccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 7888 9999999999999999998854 4788999999877 889999999999987543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.11 E-value=1.8e-09 Score=85.62 Aligned_cols=127 Identities=17% Similarity=0.176 Sum_probs=83.0
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHcc
Q 048578 334 LIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACAS 411 (519)
Q Consensus 334 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 411 (519)
+..+...+...|++++|..+++++.+. .+.+...+..++..+...|++++|...++++ ...| +...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 444555555666666666666665542 2234455556666666666666666666665 2222 44556666666777
Q ss_pred ccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048578 412 ADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKER 465 (519)
Q Consensus 412 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 465 (519)
.|++++|...++++.+..|.++..+..++.++.+.|++++|.+.++++.+.
T Consensus 82 ---~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 82 ---QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp ---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred ---hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 777888888888877777777777777888888888888888888777654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.2e-09 Score=98.21 Aligned_cols=205 Identities=11% Similarity=-0.023 Sum_probs=143.4
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcc---hhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-C---hhh
Q 048578 228 VNELTLVSVLSACANLGASELGKWVHEFVNKNCIILN---DKLGAALTDMYAKCGYIEEALRVFKIVLE--K-N---VCT 298 (519)
Q Consensus 228 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~---~~~ 298 (519)
.+...+-.....+.+.|+++.|...|+.+.+.. +.+ ...+..+..+|.+.|++++|+..|+++.+ | + ..+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 356677778888999999999999999999875 333 67788899999999999999999999855 2 1 345
Q ss_pred HHHHHHHHHH--------cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhH
Q 048578 299 WNSIIGGLAI--------HGCGEEAVKMFWQMQMSGIKPDDV-TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKH 369 (519)
Q Consensus 299 ~~~l~~~~~~--------~g~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 369 (519)
+..+..++.. .|++++|+..|+++.+. .|+.. .... ...+..+... ....
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a--------------~~~~~~~~~~-----~~~~ 150 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDA--------------TQKIRELRAK-----LARK 150 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHH--------------HHHHHHHHHH-----HHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHH--------------HHHHHHHHHH-----HHHH
Confidence 7777888888 99999999999999874 34432 2211 1111111110 1123
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHccccC-------CCCHHHHHHHHHHHHhhCCCCCc
Q 048578 370 YGCLVDLLCRARLLDEAYEVIRNM-PMEPN----AVLWGSLLTACASADD-------GANVELAEIAMERLIKLEPFNDG 437 (519)
Q Consensus 370 ~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~~~-------~~~~~~a~~~~~~~~~~~p~~~~ 437 (519)
+..+...|...|++++|+..|+++ ...|+ ...+..+..++...|. .|++++|...++++++..|+++.
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 556777888888888888888877 33333 3356666666665111 28899999999999999998754
Q ss_pred ---hHHHHHHHHHhcCCchH
Q 048578 438 ---NYVLMSNIYAAKAQWDD 454 (519)
Q Consensus 438 ---~~~~l~~~~~~~g~~~~ 454 (519)
+...+..++.+.|++++
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 34445555555554443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.09 E-value=3.3e-09 Score=96.21 Aligned_cols=202 Identities=11% Similarity=-0.027 Sum_probs=106.3
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcC-------C
Q 048578 196 VTWTAMINGHVKQKNYREGIDLFRKMRDS------GVEV-NELTLVSVLSACANLGASELGKWVHEFVNKNC-------I 261 (519)
Q Consensus 196 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------~ 261 (519)
.++..+...|...|++++|...+++..+. +-.| ...++..+...+...|++++|...+.++.+.. .
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34555666666666666666666665432 1111 22344445555555555555555555444320 0
Q ss_pred CcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHHH
Q 048578 262 ILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMS------GIKPD-DVTL 334 (519)
Q Consensus 262 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~------g~~p~-~~~~ 334 (519)
+.. ..++..+...+...|++++|...++++.+. +-.|+ ..++
T Consensus 124 ~~~-------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 124 PDV-------------------------------AKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHH-------------------------------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred hHH-------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 111 234555556666666666666666665542 11222 3467
Q ss_pred HHHHHHHhccCcHHHHHHHHHHcHHhc------CCCC-ChhHHHHHHHHHHhcCC------hHHHHHHHHhCC-CCCC-H
Q 048578 335 IAVLTACSHAGLIEKGKEIFYNMRRDY------KVEP-NVKHYGCLVDLLCRARL------LDEAYEVIRNMP-MEPN-A 399 (519)
Q Consensus 335 ~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~------~~~A~~~~~~~~-~~p~-~ 399 (519)
..+..++...|++++|...+++..+.. ...+ ....|..+...+...+. +.++...++..+ ..|+ .
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVN 252 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHH
Confidence 777777888888888888887776520 1112 22334334333333222 334444444442 2232 3
Q ss_pred HHHHHHHHHHccccCCCCHHHHHHHHHHHHhh
Q 048578 400 VLWGSLLTACASADDGANVELAEIAMERLIKL 431 (519)
Q Consensus 400 ~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~ 431 (519)
.++..+...+.. .|++++|...++++++.
T Consensus 253 ~~~~~la~~~~~---~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 253 TTLRSLGALYRR---QGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHH---TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH---cCCHHHHHHHHHHHHHh
Confidence 467777778888 88999999999888764
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.09 E-value=5.4e-09 Score=91.54 Aligned_cols=182 Identities=10% Similarity=-0.048 Sum_probs=111.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHH
Q 048578 266 KLGAALTDMYAKCGYIEEALRVFKIVLE--KN----VCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDD----VTLI 335 (519)
Q Consensus 266 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~ 335 (519)
..+..+...+.+.|++++|+..|+++.+ |+ ...+..+..++.+.|++++|+..|+++.+. .|+. ..+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHH
Confidence 3444556667777777777777777643 22 235666667777777777777777776653 2221 1344
Q ss_pred HHHHHHhc------------------cCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC
Q 048578 336 AVLTACSH------------------AGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEP 397 (519)
Q Consensus 336 ~l~~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p 397 (519)
.+..++.. .|++++|...|+++.+. .+-+...+........-.+...
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~~------------- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRLA------------- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHH-------------
Confidence 44444433 34555555555555542 1112222211111000000000
Q ss_pred CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCC---chHHHHHHHHHhcCCchHHHHHHHHHHhCCCcc
Q 048578 398 NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFND---GNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVK 469 (519)
Q Consensus 398 ~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 469 (519)
.....+...+.. .|++++|...++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+...
T Consensus 148 --~~~~~~a~~~~~---~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 148 --KYEYSVAEYYTE---RGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp --HHHHHHHHHHHH---HTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred --HHHHHHHHHHHH---cCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 011234455777 8999999999999999999875 578999999999999999999999998876653
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.08 E-value=6.1e-10 Score=101.96 Aligned_cols=200 Identities=11% Similarity=-0.053 Sum_probs=140.9
Q ss_pred ChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC-----C----hhhHHHHHHHHHHcCChHHH
Q 048578 245 ASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEK-----N----VCTWNSIIGGLAIHGCGEEA 315 (519)
Q Consensus 245 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~----~~~~~~l~~~~~~~g~~~~a 315 (519)
+++.|...++.. ...|...|++++|...|.+..+- + ..+|+.+...|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 467777666665 34567788888888888766331 1 35788888889999999999
Q ss_pred HHHHHHHHHC----CCCCC-HHHHHHHHHHHhcc-CcHHHHHHHHHHcHHhcCCCCC----hhHHHHHHHHHHhcCChHH
Q 048578 316 VKMFWQMQMS----GIKPD-DVTLIAVLTACSHA-GLIEKGKEIFYNMRRDYKVEPN----VKHYGCLVDLLCRARLLDE 385 (519)
Q Consensus 316 ~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~ 385 (519)
+..+++..+. |-... ..++..+..+|... |++++|+..|++..+...-..+ ..++..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 9988887642 21111 34788899999996 9999999999998763111111 3568889999999999999
Q ss_pred HHHHHHhC-CCCCCH--------HHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCch-----HHHHHHHHH--hc
Q 048578 386 AYEVIRNM-PMEPNA--------VLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGN-----YVLMSNIYA--AK 449 (519)
Q Consensus 386 A~~~~~~~-~~~p~~--------~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~ 449 (519)
|+..|++. .+.|+. ..+..+..++.. .|++++|...++++++++|..... +..++.+|. ..
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~ 253 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLA---ATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDS 253 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHH---TTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCH
Confidence 99999987 333321 156667777888 999999999999999999875443 445666665 45
Q ss_pred CCchHHHHHHHHH
Q 048578 450 AQWDDAGKMRRLM 462 (519)
Q Consensus 450 g~~~~A~~~~~~m 462 (519)
+++++|...|+++
T Consensus 254 ~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 254 EQLSEHCKEFDNF 266 (292)
T ss_dssp TTHHHHHHHHTTS
T ss_pred HHHHHHHHHhccC
Confidence 6777888777554
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.06 E-value=4.9e-10 Score=115.12 Aligned_cols=166 Identities=10% Similarity=-0.060 Sum_probs=79.0
Q ss_pred hccCChHHHHHHHHHHH--------HcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHc
Q 048578 241 ANLGASELGKWVHEFVN--------KNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIH 309 (519)
Q Consensus 241 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 309 (519)
...|++++|...++... +.. +.+...+..+..+|...|++++|++.|+++.+ .+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 44455555555555554 221 33344445555555555555555555555432 2344455555555555
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 048578 310 GCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEV 389 (519)
Q Consensus 310 g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 389 (519)
|++++|+..|++..+.. +-+...+..+..++.+.|++++ +..|++..+. .+.+...|..+..++.+.|++++|++.
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555554421 1123344555555555555555 5555555441 122344455555555555555555555
Q ss_pred HHhC-CCCCCH-HHHHHHHHHHcc
Q 048578 390 IRNM-PMEPNA-VLWGSLLTACAS 411 (519)
Q Consensus 390 ~~~~-~~~p~~-~~~~~ll~~~~~ 411 (519)
|++. .+.|+. ..+..+..++..
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred HHhhcccCcccHHHHHHHHHHHHc
Confidence 5555 444442 233333334333
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.05 E-value=2.4e-08 Score=89.67 Aligned_cols=175 Identities=10% Similarity=0.024 Sum_probs=101.7
Q ss_pred HHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHcHH
Q 048578 284 ALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKP-DDVTLIAVLTACSHAGLIEKGKEIFYNMRR 359 (519)
Q Consensus 284 a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 359 (519)
|+..|++..+ ++..+...+..++...|++++|++++.+.+..|-.+ +...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4555555442 233444555666666777777777777665543212 334666666677777777777777777755
Q ss_pred hcCCCC-----ChhHHHHHHHH--HHhcC--ChHHHHHHHHhC-CCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHH
Q 048578 360 DYKVEP-----NVKHYGCLVDL--LCRAR--LLDEAYEVIRNM-PMEPNAVLWGSLLTACASADDGANVELAEIAMERLI 429 (519)
Q Consensus 360 ~~~~~~-----~~~~~~~l~~~--~~~~~--~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~ 429 (519)
. .| +..+...++.+ ....| ++.+|..+|+++ ...|+..+-..++.++.. .|++++|.+.++.+.
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~---~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQ---QRNIAEAQGIVELLL 238 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHH---HTCHHHHHHHHHHHH
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHH---cCCHHHHHHHHHHHH
Confidence 2 34 23444444444 22223 677777777776 334543333333445666 677777777777665
Q ss_pred hh----------CCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048578 430 KL----------EPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 430 ~~----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
+. +|+++.++..++.+....|+ +|.++++++++..
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 54 36666666666666666665 6667777766654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.3e-10 Score=94.67 Aligned_cols=140 Identities=15% Similarity=0.003 Sum_probs=94.9
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCCh
Q 048578 305 GLAIHGCGEEAVKMFWQMQMSGIKPDDV-TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLL 383 (519)
Q Consensus 305 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 383 (519)
.+...|++++|+..+++.... .|+.. .+..+...|.+.|++++|+..|++..+. .+-+..+|..+..+|...|++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCch
Confidence 334456667777776665532 33322 4556677777777777777777777662 234566777777777778888
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHH-HHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 048578 384 DEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEI-AMERLIKLEPFNDGNYVLMSNIYAAKAQ 451 (519)
Q Consensus 384 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 451 (519)
++|+..|++. .+.| +...+..+...+.. .|++++|.+ +++++++++|.++.+|.....++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCK---NDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---HCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 8887777776 5555 35567777777777 677665544 4588888888888888888888777774
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=4.5e-09 Score=95.82 Aligned_cols=175 Identities=11% Similarity=0.007 Sum_probs=139.1
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhc
Q 048578 282 EEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDY 361 (519)
Q Consensus 282 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 361 (519)
+.....+......+...+..+...+...|++++|...|++..+.. +-+...+..+..++...|++++|...++++...
T Consensus 103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~- 180 (287)
T 3qou_A 103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ- 180 (287)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-
Confidence 344444555454455667778888889999999999999988753 335668889999999999999999999998763
Q ss_pred CCCCChhHHH-HHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCC--C
Q 048578 362 KVEPNVKHYG-CLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFN--D 436 (519)
Q Consensus 362 ~~~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~--~ 436 (519)
.|+..... .....+...++.++|.+.+++. ...| +...+..+...+.. .|++++|...++++++.+|.+ .
T Consensus 181 --~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~---~g~~~~A~~~l~~~l~~~p~~~~~ 255 (287)
T 3qou_A 181 --DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQ---VGRNEEALELLFGHLRXDLTAADG 255 (287)
T ss_dssp --GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTGGGG
T ss_pred --hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHH---cccHHHHHHHHHHHHhcccccccc
Confidence 34543332 3333466778888899888887 4456 56688888888999 999999999999999999987 8
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHH
Q 048578 437 GNYVLMSNIYAAKAQWDDAGKMRRLMK 463 (519)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (519)
.++..++.+|...|+.++|...+++..
T Consensus 256 ~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 256 QTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 899999999999999999999988754
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.04 E-value=9e-09 Score=81.48 Aligned_cols=131 Identities=15% Similarity=0.164 Sum_probs=100.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHH
Q 048578 298 TWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLL 377 (519)
Q Consensus 298 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (519)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|..+++++.+. .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 45667777788888888888888877643 345667777888888888888888888888763 344566777888888
Q ss_pred HhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC
Q 048578 378 CRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPF 434 (519)
Q Consensus 378 ~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (519)
...|++++|.+.++++ ...| +...+..+...+.. .|++++|...++++.+.+|.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK---QGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT---TTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH---HccHHHHHHHHHHHHccCCC
Confidence 8888888888888877 3333 56677777778888 88899999999888888775
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=6.5e-09 Score=104.84 Aligned_cols=163 Identities=7% Similarity=-0.046 Sum_probs=125.1
Q ss_pred cCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 048578 278 CGYIEEALRVFKIVLEK---NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIF 354 (519)
Q Consensus 278 ~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 354 (519)
.|++++|++.|++..+. +...|..+...+...|++++|.+.+++..+.. +.+...+..+..++...|++++|...+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 47889999999988653 56788999999999999999999999998753 345678999999999999999999999
Q ss_pred HHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhC
Q 048578 355 YNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLE 432 (519)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~ 432 (519)
++..+. .+.+...+..+..+|...|++++|.+.+++. ...| +...+..+...+...++.|++++|.+.++++++.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999883 3456788999999999999999999999998 4455 56678888888888211299999999999999999
Q ss_pred CCCCchHHHHH
Q 048578 433 PFNDGNYVLMS 443 (519)
Q Consensus 433 p~~~~~~~~l~ 443 (519)
|.+...|..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99888887776
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=9.6e-10 Score=89.42 Aligned_cols=124 Identities=11% Similarity=0.008 Sum_probs=102.7
Q ss_pred HHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccC
Q 048578 337 VLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADD 414 (519)
Q Consensus 337 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~ 414 (519)
|...+...|++++|+..++.... ..+.+...+..+...|.+.|++++|++.|++. .+.| +..+|..+...+..
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~--- 77 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYEL--- 77 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---
T ss_pred hHHHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---
Confidence 45567788999999999988765 22223456678999999999999999999998 6666 56788888888999
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHH-HHHHHhC
Q 048578 415 GANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKM-RRLMKER 465 (519)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~ 465 (519)
.|++++|...|+++++++|.++.++..++.+|.+.|++++|.+. +++..+.
T Consensus 78 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 78 EENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999887765 5777653
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.96 E-value=6.5e-09 Score=87.11 Aligned_cols=159 Identities=12% Similarity=0.018 Sum_probs=110.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHH-H
Q 048578 299 WNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDL-L 377 (519)
Q Consensus 299 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~ 377 (519)
+......+...|++++|...+++..+.. +.+...+..+..++...|++++|...|+++.+. .|+...+..+... +
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHH
Confidence 4445566667777777777777765431 234456777777777777777777777777652 2233333222211 1
Q ss_pred HhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCC--CchHHHHHHHHHhcCCch
Q 048578 378 CRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFN--DGNYVLMSNIYAAKAQWD 453 (519)
Q Consensus 378 ~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~ 453 (519)
...++..+|...+++. ...| +...+..+...+.. .|++++|...++++++.+|.. +..+..++.++...|+.+
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~---~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQ---VGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCC
Confidence 2222334467777776 4456 46778888888888 999999999999999999874 568999999999999999
Q ss_pred HHHHHHHHHHh
Q 048578 454 DAGKMRRLMKE 464 (519)
Q Consensus 454 ~A~~~~~~m~~ 464 (519)
+|...|++...
T Consensus 162 ~A~~~y~~al~ 172 (176)
T 2r5s_A 162 AIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 99999987643
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.95 E-value=7.8e-08 Score=83.15 Aligned_cols=176 Identities=9% Similarity=-0.078 Sum_probs=126.3
Q ss_pred HHHHHhhcCC-CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----cHHHHHHHHHHcH
Q 048578 284 ALRVFKIVLE-KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAG----LIEKGKEIFYNMR 358 (519)
Q Consensus 284 a~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~ 358 (519)
|.+.|++..+ .++.++..+...|...+++++|+.+|++..+.| +...+..+...|.. + ++++|...|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 3344444332 356677777777777888888888888887765 55667777777777 6 7888888888887
Q ss_pred HhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHcc-ccCCCCHHHHHHHHHHHH
Q 048578 359 RDYKVEPNVKHYGCLVDLLCR----ARLLDEAYEVIRNM-PMEPN---AVLWGSLLTACAS-ADDGANVELAEIAMERLI 429 (519)
Q Consensus 359 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~-~~~~~~~~~a~~~~~~~~ 429 (519)
+. -+...+..|...|.. .+++++|+++|++. ...|+ ...+..|...|.. .+..+++++|..+++++.
T Consensus 81 ~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 62 355677777777776 78888888888887 44453 5566666666554 122568899999999988
Q ss_pred hhCCCCCchHHHHHHHHHhc-C-----CchHHHHHHHHHHhCCCc
Q 048578 430 KLEPFNDGNYVLMSNIYAAK-A-----QWDDAGKMRRLMKERNIV 468 (519)
Q Consensus 430 ~~~p~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~~~~ 468 (519)
+. |.++.++..|+.+|... | ++++|...+++..+.|..
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 87 55677888888888764 3 889999999888777653
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.94 E-value=3.9e-08 Score=101.04 Aligned_cols=150 Identities=12% Similarity=0.001 Sum_probs=75.0
Q ss_pred HHcCChhHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHh
Q 048578 206 VKQKNYREGIDLFRKMR--------DSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAK 277 (519)
Q Consensus 206 ~~~~~~~~a~~~~~~m~--------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 277 (519)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|...++.+.+.+ +.+...+..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 44555555555555554 211 2233444445555555555555555555555543 3344455555555555
Q ss_pred cCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 048578 278 CGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIF 354 (519)
Q Consensus 278 ~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 354 (519)
.|++++|++.|++..+ .+...|..+..++.+.|++++ +..|++..+.. +-+...+..+..++.+.|++++|...|
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5555555555555432 234445555555555555555 55555554432 223345555555555555555555555
Q ss_pred HHcHH
Q 048578 355 YNMRR 359 (519)
Q Consensus 355 ~~~~~ 359 (519)
+++.+
T Consensus 558 ~~al~ 562 (681)
T 2pzi_A 558 DEVPP 562 (681)
T ss_dssp HTSCT
T ss_pred Hhhcc
Confidence 55543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.7e-08 Score=87.14 Aligned_cols=129 Identities=8% Similarity=-0.075 Sum_probs=94.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHh
Q 048578 300 NSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCR 379 (519)
Q Consensus 300 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (519)
..+...+.+.|++++|+..|++..+.. +-+...+..+..++...|++++|...|+++.+. -+.+...|..+..+|..
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 337888889999999999999988753 335668888999999999999999999999873 34567788888888766
Q ss_pred cCC--hHHHHHHHHhC-CCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC
Q 048578 380 ARL--LDEAYEVIRNM-PMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPF 434 (519)
Q Consensus 380 ~~~--~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (519)
.|+ .+.+...++.. ...|....+.....++.. .|++++|...|++++++.|+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~---~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLF---TTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHH---HHTHHHHHHHHHHHTTTSCC
T ss_pred HhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHH---ccCHHHHHHHHHHHHHhCCC
Confidence 654 44556666665 222223333444445566 78899999999999999987
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.8e-08 Score=92.86 Aligned_cols=219 Identities=13% Similarity=0.020 Sum_probs=143.2
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHH
Q 048578 208 QKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRV 287 (519)
Q Consensus 208 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 287 (519)
.|++++|.+++++..+... .. .+...++++.|...|..+ ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 3556667766666554311 00 011135566665555443 3445666777777666
Q ss_pred HhhcCCC-----C----hhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHhccCcHHHHHH
Q 048578 288 FKIVLEK-----N----VCTWNSIIGGLAIHGCGEEAVKMFWQMQMS----GIKPD--DVTLIAVLTACSHAGLIEKGKE 352 (519)
Q Consensus 288 ~~~~~~~-----~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----g~~p~--~~~~~~l~~~~~~~g~~~~a~~ 352 (519)
|.+..+- + ..+|+.+...|...|++++|+..|++..+. | .|. ..++..+..+|.. |++++|+.
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 6655321 1 346777788888889999999888886542 2 222 3477888888988 99999999
Q ss_pred HHHHcHHhcC---CCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CC---CCC----HHHHHHHHHHHccccCCCCHHH
Q 048578 353 IFYNMRRDYK---VEP-NVKHYGCLVDLLCRARLLDEAYEVIRNM-PM---EPN----AVLWGSLLTACASADDGANVEL 420 (519)
Q Consensus 353 ~~~~~~~~~~---~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~---~p~----~~~~~~ll~~~~~~~~~~~~~~ 420 (519)
.|++..+... ..+ ...++..+...|...|++++|++.|++. .+ .++ ...+..+...+.. .|++++
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~---~g~~~~ 213 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLH---RADYVA 213 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---TTCHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH---cCCHHH
Confidence 9998876211 111 1467888999999999999999999887 11 112 1255556666777 899999
Q ss_pred HHHHHHHHHhhCCCCCch-----HHHHHHHHHhcCCchHHHHH
Q 048578 421 AEIAMERLIKLEPFNDGN-----YVLMSNIYAAKAQWDDAGKM 458 (519)
Q Consensus 421 a~~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~~ 458 (519)
|...+++++ ..|..... ...++.++ ..|+.+.+.++
T Consensus 214 A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 214 AQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 999999999 88875433 34455555 56776666553
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=4.4e-08 Score=98.77 Aligned_cols=147 Identities=12% Similarity=-0.067 Sum_probs=88.8
Q ss_pred cCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHHcCChHHHHHHH
Q 048578 243 LGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEK---NVCTWNSIIGGLAIHGCGEEAVKMF 319 (519)
Q Consensus 243 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~ 319 (519)
.|++++|...+++..+.. +.+...+..+...|...|++++|.+.|++..+. +...+..+...+...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 356677777777766653 445666777777777777777777777776442 4556777777777777777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhc---CChHHHHHHHHhC
Q 048578 320 WQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRA---RLLDEAYEVIRNM 393 (519)
Q Consensus 320 ~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~ 393 (519)
++..+.. +.+...+..+..++...|++++|.+.|++..+. .+.+...+..+..++... |+.++|.+.+++.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 7776642 334557777777777777777777777777662 233456667777777777 7777777777766
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.90 E-value=8.8e-08 Score=82.59 Aligned_cols=184 Identities=11% Similarity=0.043 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHH
Q 048578 197 TWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNEL-TLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMY 275 (519)
Q Consensus 197 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 275 (519)
.+......+...|++++|+..|++..+. .|+.. .+.. . .... ...........+..+|
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~-~----~~~~--------------~~~~~~~~~~~lg~~~ 64 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYW-T----NVDK--------------NSEISSKLATELALAY 64 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHH-H----HSCT--------------TSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHH-h----hhcc--------------hhhhhHHHHHHHHHHH
Confidence 3444556677888888888888887765 34322 2211 0 0000 0011222334477788
Q ss_pred HhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc--HHHH
Q 048578 276 AKCGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGL--IEKG 350 (519)
Q Consensus 276 ~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~--~~~a 350 (519)
.+.|++++|+..|++..+ .+...+..+...+...|++++|+..|++..+.. +-+..++..+..++...|+ .+.+
T Consensus 65 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~ 143 (208)
T 3urz_A 65 KKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKL 143 (208)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHH
Confidence 888888888888887754 356778888888888999999999999888743 3345677777777765554 3444
Q ss_pred HHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHH
Q 048578 351 KEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPNAVLWGSL 405 (519)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~~~~~l 405 (519)
...+..... ..|....+..+..++...|++++|...|++. .+.|+......+
T Consensus 144 ~~~~~~~~~---~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l 196 (208)
T 3urz_A 144 ETDYKKLSS---PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTL 196 (208)
T ss_dssp HHHHC---C---CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHH
T ss_pred HHHHHHHhC---CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 555555432 2233334445566777788999999999887 778886554443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.88 E-value=8.5e-09 Score=83.45 Aligned_cols=99 Identities=9% Similarity=-0.106 Sum_probs=85.8
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHH
Q 048578 366 NVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMS 443 (519)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 443 (519)
+...+..+...+.+.|++++|...|++. .+.| +...|..+..++.. .|++++|...|+++++++|+++.+|..++
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~---~g~~~~Ai~~~~~al~l~P~~~~~~~~lg 111 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQI---KEQFQQAADLYAVAFALGKNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HccHHHHHHHHHHHHhhCCCCcHHHHHHH
Confidence 3557778888889999999999999888 5566 56678888888888 99999999999999999999999999999
Q ss_pred HHHHhcCCchHHHHHHHHHHhCCC
Q 048578 444 NIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
.+|.+.|++++|...|++..+...
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999887553
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.7e-08 Score=79.16 Aligned_cols=108 Identities=10% Similarity=-0.007 Sum_probs=72.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHc
Q 048578 333 TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACA 410 (519)
Q Consensus 333 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 410 (519)
.+......|.+.|++++|+..|++..+. .+.+...|..+..+|.+.|++++|++.+++. .+.| +...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 5566666777777777777777776662 3345666677777777777777777777666 4444 3456666666677
Q ss_pred cccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 048578 411 SADDGANVELAEIAMERLIKLEPFNDGNYVLMSNI 445 (519)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 445 (519)
. .|++++|.+.|+++++++|.++.++..+..+
T Consensus 93 ~---~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 93 A---MREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp H---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred H---CCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 7 7777777777777777777776666665543
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.86 E-value=9.1e-08 Score=80.02 Aligned_cols=156 Identities=14% Similarity=0.061 Sum_probs=108.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCC---CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH-H
Q 048578 165 HSLTRLITFYCNFGDVKSAQLLFDQMTE---KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSA-C 240 (519)
Q Consensus 165 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~ 240 (519)
..+......+...|++++|...|++..+ .+...+..+..++...|++++|+..|++..... |+.......... +
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 3455667778899999999999999886 456788999999999999999999999887653 344333222212 1
Q ss_pred hccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC-----hhhHHHHHHHHHHcCChHHH
Q 048578 241 ANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKN-----VCTWNSIIGGLAIHGCGEEA 315 (519)
Q Consensus 241 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a 315 (519)
...+....+...++...+.. |.+...+..+..++...|++++|...|+++.+.+ ...+..+...+...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 22223334567777777654 4456677777777777777777777777764422 33666677777777777777
Q ss_pred HHHHHHHH
Q 048578 316 VKMFWQMQ 323 (519)
Q Consensus 316 ~~~~~~m~ 323 (519)
...|++..
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=1.7e-07 Score=85.36 Aligned_cols=162 Identities=10% Similarity=-0.004 Sum_probs=121.0
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhhH-HHHHHH
Q 048578 229 NELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLE--KNVCTW-NSIIGG 305 (519)
Q Consensus 229 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~-~~l~~~ 305 (519)
+...+..+...+...|++++|...++.+.+.. |.+...+..+..++...|++++|...++++.. |+.... ......
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 44556666677778888888888888887765 55677788888889999999999999988865 333222 222334
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHH
Q 048578 306 LAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDE 385 (519)
Q Consensus 306 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 385 (519)
+...++.++|...+++..+.. +.+...+..+...+...|++++|...|.++.+...-..+...+..++..|...|+.++
T Consensus 195 l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 667778888888888887753 4456688888889999999999999999988842222236678888999999999888
Q ss_pred HHHHHHh
Q 048578 386 AYEVIRN 392 (519)
Q Consensus 386 A~~~~~~ 392 (519)
|...+++
T Consensus 274 a~~~~r~ 280 (287)
T 3qou_A 274 LASXYRR 280 (287)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887765
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.85 E-value=3.2e-07 Score=83.26 Aligned_cols=226 Identities=8% Similarity=-0.042 Sum_probs=117.7
Q ss_pred HcCC-hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC--ChHHHHHHHHHHHHcCCCcchhHHHHHHHHH----Hhc-
Q 048578 207 KQKN-YREGIDLFRKMRDSGVEVNELTLVSVLSACANLG--ASELGKWVHEFVNKNCIILNDKLGAALTDMY----AKC- 278 (519)
Q Consensus 207 ~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~- 278 (519)
+.|. .++|+++++.+...+ +-+...|+.--.++...+ +++++...++.+...+ |-+..+++.-..++ ...
T Consensus 44 ~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 44 KAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTT
T ss_pred HcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcc
Confidence 4444 467888888877653 223445565555666666 7777777777777665 33344443332222 333
Q ss_pred --CCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc-----
Q 048578 279 --GYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGE--EAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGL----- 346 (519)
Q Consensus 279 --g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~--~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~----- 346 (519)
+++++++.+++++.+ +|..+|+.-.-.+.+.|.++ ++++.++++.+.. .-|...|+.-...+...|.
T Consensus 122 ~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhh
Confidence 556666666666543 24445555555555556555 6666666666543 3344455544444444444
Q ss_pred -HHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHH-HHHHHHhC-CC----CCCHHHHHHHHHHHccccCCCCHH
Q 048578 347 -IEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDE-AYEVIRNM-PM----EPNAVLWGSLLTACASADDGANVE 419 (519)
Q Consensus 347 -~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~-~~----~p~~~~~~~ll~~~~~~~~~~~~~ 419 (519)
++++++.++.+.. ..+-|...|+.+...+.+.|+..+ +.++..++ .. ..+...+..+...+.. .|+.+
T Consensus 201 ~~~eEl~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~---~~~~~ 275 (306)
T 3dra_A 201 TIDEELNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQ---QKKYN 275 (306)
T ss_dssp HHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHH---TTCHH
T ss_pred hHHHHHHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHc---cCCHH
Confidence 5555555555554 223445555555555555554332 33344443 11 1234444555555544 45555
Q ss_pred HHHHHHHHHHh-hCCCCCchHH
Q 048578 420 LAEIAMERLIK-LEPFNDGNYV 440 (519)
Q Consensus 420 ~a~~~~~~~~~-~~p~~~~~~~ 440 (519)
+|.++++.+.+ .+|.....|.
T Consensus 276 ~A~~~~~~l~~~~Dpir~~yW~ 297 (306)
T 3dra_A 276 ESRTVYDLLKSKYNPIRSNFWD 297 (306)
T ss_dssp HHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHHHhccChHHHHHHH
Confidence 55555555553 4554444443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.84 E-value=5.7e-08 Score=84.97 Aligned_cols=185 Identities=9% Similarity=-0.092 Sum_probs=129.8
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCC--cchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC-hh---hHH
Q 048578 229 NELTLVSVLSACANLGASELGKWVHEFVNKNCII--LNDKLGAALTDMYAKCGYIEEALRVFKIVLE--KN-VC---TWN 300 (519)
Q Consensus 229 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~---~~~ 300 (519)
+...+..+...+.+.|++++|...|+.+.+.... .....+..+..+|.+.|++++|+..|+++.+ |+ .. ++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3445666777889999999999999999986422 1245777889999999999999999999854 32 21 455
Q ss_pred HHHHHHHH------------------cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHcHHhc
Q 048578 301 SIIGGLAI------------------HGCGEEAVKMFWQMQMSGIKPDDV-TLIAVLTACSHAGLIEKGKEIFYNMRRDY 361 (519)
Q Consensus 301 ~l~~~~~~------------------~g~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 361 (519)
.+..++.. .|++++|...|+++.+. .|+.. ....... ...+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~~--- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHHH---
Confidence 55555554 57899999999999875 45543 2221111 001111111
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCC
Q 048578 362 KVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPNA----VLWGSLLTACASADDGANVELAEIAMERLIKLEPFND 436 (519)
Q Consensus 362 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 436 (519)
.....+...|.+.|++++|+..|+++ ...|+. ..+..+..++.. .|+.++|.+.++++....|.+.
T Consensus 148 ------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~---~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 148 ------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQ---MQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHCCSCCC
T ss_pred ------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHH---cCCcHHHHHHHHHHHhhCCCch
Confidence 12235677888999999999999887 444442 467777788888 9999999999999888888754
Q ss_pred c
Q 048578 437 G 437 (519)
Q Consensus 437 ~ 437 (519)
.
T Consensus 219 ~ 219 (225)
T 2yhc_A 219 E 219 (225)
T ss_dssp C
T ss_pred h
Confidence 4
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.5e-07 Score=81.25 Aligned_cols=142 Identities=12% Similarity=-0.080 Sum_probs=81.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH
Q 048578 269 AALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIE 348 (519)
Q Consensus 269 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 348 (519)
..+...+...|++++|...|++...++..+|..+...+...|++++|+..+++..+.. +.+...+..+..++...|+++
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHH
Confidence 3445556666777777777776666666666666666666777777777666665532 334456666666666666666
Q ss_pred HHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCC-HHHHHHHHHHHccccCCCCHHHHHHHH
Q 048578 349 KGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM--PMEPN-AVLWGSLLTACASADDGANVELAEIAM 425 (519)
Q Consensus 349 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~p~-~~~~~~ll~~~~~~~~~~~~~~a~~~~ 425 (519)
+|...|++..+. .+.+.... +... ...|+ ...+..+...+.. .|++++|...+
T Consensus 89 ~A~~~~~~al~~--~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~ 144 (213)
T 1hh8_A 89 LAIKDLKEALIQ--LRGNQLID-------------------YKILGLQFKLFACEVLYNIAFMYAK---KEEWKKAEEQL 144 (213)
T ss_dssp HHHHHHHHHHHT--TTTCSEEE-------------------CGGGTBCCEEEHHHHHHHHHHHHHH---TTCHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCccHHH-------------------HHHhccccCccchHHHHHHHHHHHH---ccCHHHHHHHH
Confidence 666666666552 11111000 0000 12222 2355555556666 66777777777
Q ss_pred HHHHhhCCCC
Q 048578 426 ERLIKLEPFN 435 (519)
Q Consensus 426 ~~~~~~~p~~ 435 (519)
+++++..|.+
T Consensus 145 ~~al~~~p~~ 154 (213)
T 1hh8_A 145 ALATSMKSEP 154 (213)
T ss_dssp HHHHTTCCSG
T ss_pred HHHHHcCccc
Confidence 7777776654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.82 E-value=1e-07 Score=82.44 Aligned_cols=127 Identities=13% Similarity=0.055 Sum_probs=105.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHc
Q 048578 333 TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACA 410 (519)
Q Consensus 333 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 410 (519)
.+..+...+...|++++|...|++.. .|+...|..+..+|...|++++|.+.|++. ...| +...+..+...+.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 34556667778888888888887763 457778888888888888888888888877 3344 5667888888888
Q ss_pred cccCCCCHHHHHHHHHHHHhhCCCCC----------------chHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 411 SADDGANVELAEIAMERLIKLEPFND----------------GNYVLMSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
. .|++++|...++++++..|.+. .++..++.+|.+.|++++|.+.+++..+...
T Consensus 83 ~---~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 83 Q---TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp H---TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred H---cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 8 8999999999999999888877 8999999999999999999999999987654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.80 E-value=2.2e-08 Score=92.30 Aligned_cols=196 Identities=9% Similarity=-0.057 Sum_probs=148.5
Q ss_pred ccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHh-cCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHH
Q 048578 242 NLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAK-CGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFW 320 (519)
Q Consensus 242 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 320 (519)
..|++++|..++++..+.... . +.+ .++++.|...|.+. ...|...|++++|...|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~----------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S----------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C----------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c----------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHH
Confidence 356778888888887764311 1 122 57888888887653 567888999999999999
Q ss_pred HHHHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHcHHhc---CCCC-ChhHHHHHHHHHHhcCChHHHHHHHH
Q 048578 321 QMQMS----GIKPD-DVTLIAVLTACSHAGLIEKGKEIFYNMRRDY---KVEP-NVKHYGCLVDLLCRARLLDEAYEVIR 391 (519)
Q Consensus 321 ~m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 391 (519)
+..+. |-.+. ..+|..+..+|...|++++|+..|++..+-. +... ...++..+..+|.. |++++|++.|+
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ 139 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 87542 21111 3478889999999999999999999876621 1111 24578888999988 99999999998
Q ss_pred hC-CCCC---C----HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCC------chHHHHHHHHHhcCCchHHHH
Q 048578 392 NM-PMEP---N----AVLWGSLLTACASADDGANVELAEIAMERLIKLEPFND------GNYVLMSNIYAAKAQWDDAGK 457 (519)
Q Consensus 392 ~~-~~~p---~----~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~ 457 (519)
+. .+.| + ..++..+...+.. .|++++|...++++++..|.+. ..+..++.++...|++++|..
T Consensus 140 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 140 QAAAVFENEERLRQAAELIGKASRLLVR---QQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 87 1111 1 3577788888999 9999999999999998865543 367778888899999999999
Q ss_pred HHHHHH
Q 048578 458 MRRLMK 463 (519)
Q Consensus 458 ~~~~m~ 463 (519)
.+++..
T Consensus 217 ~~~~al 222 (307)
T 2ifu_A 217 CVRESY 222 (307)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 999987
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.79 E-value=7.5e-07 Score=81.30 Aligned_cols=160 Identities=7% Similarity=-0.056 Sum_probs=119.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCC----hhHHHH
Q 048578 302 IIGGLAIHGCGEEAVKMFWQMQMSG-IKPDDV----TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPN----VKHYGC 372 (519)
Q Consensus 302 l~~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~ 372 (519)
.+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|...|++..+...-.++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 4567788899999999998887632 122221 3345667778888999999999998872122223 336888
Q ss_pred HHHHHHhcCChHHHHHHHHhC-----CC--C-CC-HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCC------Cc
Q 048578 373 LVDLLCRARLLDEAYEVIRNM-----PM--E-PN-AVLWGSLLTACASADDGANVELAEIAMERLIKLEPFN------DG 437 (519)
Q Consensus 373 l~~~~~~~~~~~~A~~~~~~~-----~~--~-p~-~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~ 437 (519)
+...|...|++++|...|+++ .. . +. ..++..+...|.. .|++++|...++++++..+.. +.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~---~~~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL---DSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 999999999999999888876 11 1 11 2367788888999 999999999999998765332 56
Q ss_pred hHHHHHHHHHhcCC-chHHHHHHHHHHh
Q 048578 438 NYVLMSNIYAAKAQ-WDDAGKMRRLMKE 464 (519)
Q Consensus 438 ~~~~l~~~~~~~g~-~~~A~~~~~~m~~ 464 (519)
+|..++.+|.+.|+ +++|.+.+++...
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88999999999995 5999999888753
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.78 E-value=1e-07 Score=78.57 Aligned_cols=127 Identities=10% Similarity=0.008 Sum_probs=101.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHc
Q 048578 333 TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACA 410 (519)
Q Consensus 333 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 410 (519)
.+..+...+...|++++|...|++..+. .+.+...+..+..++...|++++|.+.+++. ...| +...+..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 5666777778888888888888888773 3345777888888888889999998888887 3344 5667888888888
Q ss_pred cccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHH--HHhcCCchHHHHHHHHHHh
Q 048578 411 SADDGANVELAEIAMERLIKLEPFNDGNYVLMSNI--YAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~ 464 (519)
. .|++++|...++++++..|.+...+..+..+ +...|++++|.+.+++...
T Consensus 93 ~---~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 A---LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp H---TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H---hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 8 9999999999999999999988888555554 7888999999999887754
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.8e-08 Score=81.61 Aligned_cols=98 Identities=9% Similarity=0.008 Sum_probs=79.9
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHH
Q 048578 366 NVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMS 443 (519)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 443 (519)
+...+..+...+...|++++|...|++. ...| +...|..+..++.. .|++++|...++++++.+|+++.++..++
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~l~p~~~~~~~~lg 96 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQA---MGQYDLAIHSYSYGAVMDIXEPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHSTTCTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHH---HhhHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 4556677788888888888888888877 4455 56677777777888 88899999999999999998888999999
Q ss_pred HHHHhcCCchHHHHHHHHHHhCC
Q 048578 444 NIYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
.+|...|++++|.+.|++..+..
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC
Confidence 99999999999999888887644
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.77 E-value=5.7e-06 Score=75.03 Aligned_cols=213 Identities=13% Similarity=0.072 Sum_probs=133.7
Q ss_pred ChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcC--CHHHHHHHHhhcCCC---ChhhHHHHHHHH----HHc---CCh
Q 048578 245 ASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCG--YIEEALRVFKIVLEK---NVCTWNSIIGGL----AIH---GCG 312 (519)
Q Consensus 245 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~---~~~~~~~l~~~~----~~~---g~~ 312 (519)
..++|....+.++..+ |-+..+++.--.++...| ++++++++++.+... +..+|+.-...+ ... +++
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 3456666666666665 445555666666666666 777777777776542 344555443333 344 667
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH--HHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCC------hH
Q 048578 313 EEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIE--KGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARL------LD 384 (519)
Q Consensus 313 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~ 384 (519)
++++.+++++.+.. +-+..+|+.-...+.+.|.++ ++++.++++.+. -+-|-..|+.....+...++ ++
T Consensus 127 ~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 127 YREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHH
Confidence 77777777777643 445556666666666666666 777777777762 34556666666666666665 67
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCC-HHHHHHHHHHHHhhC---CCCCchHHHHHHHHHhcCCchHHHHH
Q 048578 385 EAYEVIRNM-PMEP-NAVLWGSLLTACASADDGAN-VELAEIAMERLIKLE---PFNDGNYVLMSNIYAAKAQWDDAGKM 458 (519)
Q Consensus 385 ~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~-~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~ 458 (519)
++++.++++ ...| |...|+.+-..+.. .|+ .+.+..+.+++.+.+ |.++.++..++.+|.+.|+.++|.++
T Consensus 204 eEl~~~~~aI~~~p~n~SaW~y~~~ll~~---~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 204 EELNYVKDKIVKCPQNPSTWNYLLGIHER---FDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHHHH---TTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHHh---cCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 777777666 4444 45566655555555 333 444555666666554 66677777777777777777777777
Q ss_pred HHHHHh
Q 048578 459 RRLMKE 464 (519)
Q Consensus 459 ~~~m~~ 464 (519)
++.+.+
T Consensus 281 ~~~l~~ 286 (306)
T 3dra_A 281 YDLLKS 286 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 777764
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.76 E-value=5.2e-08 Score=76.29 Aligned_cols=101 Identities=13% Similarity=0.128 Sum_probs=89.9
Q ss_pred CCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchH
Q 048578 363 VEPN-VKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNY 439 (519)
Q Consensus 363 ~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 439 (519)
+.|+ ...+......|.+.|++++|++.|++. .+.| +...|..+..++.. .|++++|+..++++++++|.++.+|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~---~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTK---LMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHh---hccHHHHHHHHHHHHHhhhhhhHHH
Confidence 3444 456778899999999999999999998 5556 56788888888999 9999999999999999999999999
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048578 440 VLMSNIYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 440 ~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
..++.+|...|++++|.+.|++..+..
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 999999999999999999999987744
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.76 E-value=2.7e-07 Score=84.28 Aligned_cols=164 Identities=6% Similarity=-0.075 Sum_probs=118.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCC--CC--hh
Q 048578 298 TWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDD-----VTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVE--PN--VK 368 (519)
Q Consensus 298 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~--~~ 368 (519)
.+...+..+...|++++|.+.+++..+.....+. ..+..+...+...|++++|...+++..+...-. +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444566777888888888888877664322111 234445666778889999999988877521111 11 44
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC----CCCCC-----HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC-----
Q 048578 369 HYGCLVDLLCRARLLDEAYEVIRNM----PMEPN-----AVLWGSLLTACASADDGANVELAEIAMERLIKLEPF----- 434 (519)
Q Consensus 369 ~~~~l~~~~~~~~~~~~A~~~~~~~----~~~p~-----~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~----- 434 (519)
+|+.+...|...|++++|...|++. ...|+ ..++..+...|.. .|++++|...++++++..+.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~---~~~y~~Al~~~~kal~~~~~~~~~~ 233 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL---DSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHH---HhhHHHHHHHHHHHHHHHHhcCcHH
Confidence 7888899999999999999888776 11222 2477788888988 99999999999999876422
Q ss_pred -CCchHHHHHHHHHhcCCchHH-HHHHHHHHh
Q 048578 435 -NDGNYVLMSNIYAAKAQWDDA-GKMRRLMKE 464 (519)
Q Consensus 435 -~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 464 (519)
-..+|..++.+|.+.|++++| ...+++...
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 156788999999999999999 777877653
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.76 E-value=6.8e-07 Score=77.20 Aligned_cols=168 Identities=9% Similarity=-0.053 Sum_probs=114.8
Q ss_pred HHHHHhcCCC-CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC----ChHHHHHHHHHHH
Q 048578 183 AQLLFDQMTE-KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLG----ASELGKWVHEFVN 257 (519)
Q Consensus 183 A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~ 257 (519)
|.+.|++..+ .++.++..+...|...+++++|++.|++..+.| +...+..+...|.. + ++++|...++...
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 4444444433 466677777778888888888888888887765 45666666666666 5 7888888888877
Q ss_pred HcCCCcchhHHHHHHHHHHh----cCCHHHHHHHHhhcCCCC-----hhhHHHHHHHHHH----cCChHHHHHHHHHHHH
Q 048578 258 KNCIILNDKLGAALTDMYAK----CGYIEEALRVFKIVLEKN-----VCTWNSIIGGLAI----HGCGEEAVKMFWQMQM 324 (519)
Q Consensus 258 ~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~-----~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~ 324 (519)
+.+ ++..+..|..+|.. .+++++|+.+|++..+.+ +.++..|...|.. .+++++|..+|++..+
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 654 45566666677766 677888888887776643 4667777777777 6778888888888776
Q ss_pred CCCCCCHHHHHHHHHHHhcc------CcHHHHHHHHHHcHH
Q 048578 325 SGIKPDDVTLIAVLTACSHA------GLIEKGKEIFYNMRR 359 (519)
Q Consensus 325 ~g~~p~~~~~~~l~~~~~~~------g~~~~a~~~~~~~~~ 359 (519)
. ..+...+..|...|... .+.++|...|+...+
T Consensus 158 ~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 158 L--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp T--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred c--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 5 22334555565555432 277788888777776
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.71 E-value=1.9e-07 Score=73.22 Aligned_cols=118 Identities=10% Similarity=-0.034 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 048578 331 DVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTA 408 (519)
Q Consensus 331 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~ 408 (519)
...+..+...+...|+++.|...|++..+. .+.+...+..+...+...|++++|.+.+++. ...| +...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 346677777888888888888888888773 3446677888888888888998888888877 3344 46677778888
Q ss_pred HccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCch
Q 048578 409 CASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWD 453 (519)
Q Consensus 409 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 453 (519)
+.. .|++++|...++++.+..|.++..+..++.++.+.|+++
T Consensus 90 ~~~---~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 90 LSS---LNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHH---TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHH---hCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 888 899999999999999999999999999999999888763
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.71 E-value=2.7e-07 Score=71.64 Aligned_cols=115 Identities=17% Similarity=0.152 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 048578 331 DVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTA 408 (519)
Q Consensus 331 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~ 408 (519)
...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...++++ ...| +..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 346667777777788888888888877763 2345667777788888888888888888777 3233 56677777778
Q ss_pred HccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC
Q 048578 409 CASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKA 450 (519)
Q Consensus 409 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 450 (519)
+.. .|++++|...++++.+..|.++..+..++.++.+.|
T Consensus 87 ~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYK---QGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHH---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHH---hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 888 888999999999998888888888888887776554
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.70 E-value=5.7e-06 Score=81.08 Aligned_cols=121 Identities=11% Similarity=0.004 Sum_probs=65.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcC-ChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 048578 333 TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRAR-LLDEAYEVIRNM-PMEP-NAVLWGSLLTAC 409 (519)
Q Consensus 333 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 409 (519)
.|...+....+.++.+.|..+|+.. +. . ..+...|...+..-...+ +.+.|..+|+.. ..-| +...+...+...
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e 364 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GN-E-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TT-S-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hC-C-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 4555555555566677777777766 31 1 123333432222222222 567777777665 1112 233344455555
Q ss_pred ccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 048578 410 ASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMK 463 (519)
Q Consensus 410 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (519)
.. .|+.+.|..+++++ +.....|...+..-...|+.+.+.+++++..
T Consensus 365 ~~---~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 365 LR---IGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HH---HTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HH---cCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55 66677777777765 2234566666666666677777777666665
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.68 E-value=2.1e-07 Score=73.33 Aligned_cols=115 Identities=10% Similarity=0.025 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 048578 332 VTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTAC 409 (519)
Q Consensus 332 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 409 (519)
..+..+...+...|++++|...|++..+ ..+.+...+..+..++...|++++|.+.+++. ...| +...+..+...+
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4566666666666666666666666655 22334556666666666677777777666665 3333 455666666677
Q ss_pred ccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 048578 410 ASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQ 451 (519)
Q Consensus 410 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 451 (519)
.. .|++++|...++++++.+|.+...+..++.++.+.|+
T Consensus 95 ~~---~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 95 EA---MKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HH---TTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HH---HhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 77 7788888888888888888777777777777776653
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.66 E-value=9.6e-05 Score=72.38 Aligned_cols=203 Identities=13% Similarity=-0.061 Sum_probs=137.7
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHH-HHHHHhh
Q 048578 212 REGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEE-ALRVFKI 290 (519)
Q Consensus 212 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~ 290 (519)
+.+..+|+++.... +.+...|...+..+.+.|+.+.|..+++..... |.+...+.. |....+.++ ...+++.
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~ 268 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRK 268 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHH
Confidence 45677888888753 445777887888888889999999999999988 444333322 222111111 1122222
Q ss_pred cC--C-------C---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCcHHHHHHHHHHc
Q 048578 291 VL--E-------K---NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSH-AGLIEKGKEIFYNM 357 (519)
Q Consensus 291 ~~--~-------~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~ 357 (519)
.. . + ....|...+....+.++.+.|..+|++. ... ..+...|...+..-.. .++.+.|..+|+..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~a 346 (493)
T 2uy1_A 269 YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSG 346 (493)
T ss_dssp TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 11 0 0 1245667777777788999999999999 321 2344455433322222 34699999999999
Q ss_pred HHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHh
Q 048578 358 RRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVELAEIAMERLIK 430 (519)
Q Consensus 358 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~ 430 (519)
.+.++ .++..+...++.....|+.+.|..+|+.+. .....|...+..-.. .|+.+.+..+++++.+
T Consensus 347 l~~~~--~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~---~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 347 LLKHP--DSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFM---VGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHH---HSCHHHHHHHHHHHHH
T ss_pred HHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHH
Confidence 98543 345567778888889999999999999982 256778888877777 8999999999998875
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.66 E-value=1.5e-07 Score=87.75 Aligned_cols=126 Identities=13% Similarity=0.006 Sum_probs=99.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCC---------------hhHHHHHHHHHHhcCChHHHHHHHHhC-CCC
Q 048578 333 TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPN---------------VKHYGCLVDLLCRARLLDEAYEVIRNM-PME 396 (519)
Q Consensus 333 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~ 396 (519)
.+..+...+.+.|++++|...|++..+. . +.+ ...|..+..+|.+.|++++|+..+++. .+.
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~-~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSW-L-EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH-T-TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH-h-hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4555555666666666666666666552 1 111 468888999999999999999999888 445
Q ss_pred C-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHH-HHHHHHHH
Q 048578 397 P-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDA-GKMRRLMK 463 (519)
Q Consensus 397 p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 463 (519)
| +...+..+..++.. .|++++|...|+++++++|.+..++..++.++.+.|++++| ..++++|.
T Consensus 227 p~~~~a~~~lg~~~~~---~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLA---VNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp TTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 56788888888999 99999999999999999999999999999999999999999 44566653
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.65 E-value=1.1e-07 Score=76.26 Aligned_cols=98 Identities=11% Similarity=-0.066 Sum_probs=81.3
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHH
Q 048578 366 NVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMS 443 (519)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 443 (519)
+...+..+...+.+.|++++|...|++. ...| +...|..+..++.. .|++++|...++++++.+|.++..+..++
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~lg 93 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQS---LGLYEQALQSYSYGALMDINEPRFPFHAA 93 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH---HhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 3455667778888889999999888887 4455 56677777777888 88999999999999999999999999999
Q ss_pred HHHHhcCCchHHHHHHHHHHhCC
Q 048578 444 NIYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
.+|...|++++|.+.|++..+..
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999998887643
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.65 E-value=5.6e-08 Score=88.17 Aligned_cols=189 Identities=9% Similarity=-0.082 Sum_probs=116.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048578 265 DKLGAALTDMYAKCGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTAC 341 (519)
Q Consensus 265 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 341 (519)
...+..+...+...|++++|+..|++..+ .+...|..+...+.+.|++++|+..+++..+.. +.+...+..+..++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34455566666667777777777666532 255667777777777788888888887776642 33455777777788
Q ss_pred hccCcHHHHHHHHHHcHHhcCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHccccCCCCH
Q 048578 342 SHAGLIEKGKEIFYNMRRDYKVEP---NVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANV 418 (519)
Q Consensus 342 ~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 418 (519)
...|++++|...|++..+...-.+ ....+..+ ...+...+.. .......++......+ ..+ . .|++
T Consensus 83 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~i~~~l-~~l-~---~~~~ 151 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--RIAKKKRWNS----IEERRIHQESELHSYL-TRL-I---AAER 151 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--HHHHHHHHHH----HHHTCCCCCCHHHHHH-HHH-H---HHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--HHHHHHHHHH----HHHHHHhhhHHHHHHH-HHH-H---HHHH
Confidence 888888888888877765210000 11111111 1112212211 1112222333333323 222 2 4688
Q ss_pred HHHHHHHHHHHhhCCCCCchHHHHHHHHHhc-CCchHHHHHHHHHHhC
Q 048578 419 ELAEIAMERLIKLEPFNDGNYVLMSNIYAAK-AQWDDAGKMRRLMKER 465 (519)
Q Consensus 419 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 465 (519)
++|.+.++++.+.+|.+......+...+.+. +.+++|.++|++..+.
T Consensus 152 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 152 ERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999998777777777777766 7788999999888654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.64 E-value=7.8e-08 Score=80.47 Aligned_cols=121 Identities=12% Similarity=0.118 Sum_probs=77.1
Q ss_pred hccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH-HccccCCCCH
Q 048578 342 SHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTA-CASADDGANV 418 (519)
Q Consensus 342 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~-~~~~~~~~~~ 418 (519)
...|++++|...++...+. .+.+...|..+...|...|++++|...|++. .+.| +...+..+... +.. .|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~---~~~~ 95 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQ---ASQH 95 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH---TTTC
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh---cCCc
Confidence 4456666666666666552 2345566666777777777777777777666 3333 44455555555 555 6666
Q ss_pred --HHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 419 --ELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 419 --~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
++|...++++++.+|.++.++..++.+|...|++++|...+++..+...
T Consensus 96 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 7777777777777777777777777777777777777777777766443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.62 E-value=6.6e-06 Score=74.99 Aligned_cols=158 Identities=13% Similarity=-0.037 Sum_probs=115.1
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCC---h------hhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHH
Q 048578 271 LTDMYAKCGYIEEALRVFKIVLEKN---V------CTWNSIIGGLAIHGCGEEAVKMFWQMQMSGI-KPD----DVTLIA 336 (519)
Q Consensus 271 l~~~~~~~g~~~~a~~~~~~~~~~~---~------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~ 336 (519)
.+..+...|++++|...+++..+.. . ..+..+...+...|++++|+..+++..+... .++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 4667788889999998888875421 1 1233456666677899999999999887322 222 236888
Q ss_pred HHHHHhccCcHHHHHHHHHHcHHhc----CCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC-HHHHH
Q 048578 337 VLTACSHAGLIEKGKEIFYNMRRDY----KVEPN-VKHYGCLVDLLCRARLLDEAYEVIRNM-------PMEPN-AVLWG 403 (519)
Q Consensus 337 l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~~~p~-~~~~~ 403 (519)
+..+|...|++++|...|+++.+.. +..+. ..++..+...|.+.|++++|.+.+++. +..+. ..++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999999999887421 11122 347788999999999999999988876 22233 55777
Q ss_pred HHHHHHccccCCC-CHHHHHHHHHHHHhh
Q 048578 404 SLLTACASADDGA-NVELAEIAMERLIKL 431 (519)
Q Consensus 404 ~ll~~~~~~~~~~-~~~~a~~~~~~~~~~ 431 (519)
.+...+.. .| ++++|.+.+++++..
T Consensus 241 ~lg~~~~~---~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRK---LEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHH---TTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---hCCcHHHHHHHHHHHHHH
Confidence 78888888 88 479999999988764
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=6.6e-08 Score=78.17 Aligned_cols=104 Identities=11% Similarity=-0.072 Sum_probs=83.2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 048578 332 VTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTAC 409 (519)
Q Consensus 332 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 409 (519)
..+..+...+...|++++|...|+.+... -+.+...|..+..+|...|++++|+..|++. .+.| +...+..+..++
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 46777778888889999999998888772 3456778888888889999999999988887 4455 456777777788
Q ss_pred ccccCCCCHHHHHHHHHHHHhhCCCCCchHH
Q 048578 410 ASADDGANVELAEIAMERLIKLEPFNDGNYV 440 (519)
Q Consensus 410 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 440 (519)
.. .|++++|...|+++++..|+++....
T Consensus 100 ~~---~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 100 LQ---XGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp HH---TTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HH---cCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 88 89999999999999999888776543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.7e-06 Score=78.98 Aligned_cols=162 Identities=12% Similarity=-0.040 Sum_probs=105.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCC---Ch------hhHHHHHHHHHHcCChHHHHHHHHHHHHCC---CCCC--HH
Q 048578 267 LGAALTDMYAKCGYIEEALRVFKIVLEK---NV------CTWNSIIGGLAIHGCGEEAVKMFWQMQMSG---IKPD--DV 332 (519)
Q Consensus 267 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g---~~p~--~~ 332 (519)
.+...+..+...|++++|.+.+.+..+. .. ..+..+...+...|++++|+..+++..+.. ..+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444566677777777777777654321 11 123344555667778888888888776431 1122 34
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHcHH---hcCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHhC-CC------CCC-H
Q 048578 333 TLIAVLTACSHAGLIEKGKEIFYNMRR---DYKVEP--NVKHYGCLVDLLCRARLLDEAYEVIRNM-PM------EPN-A 399 (519)
Q Consensus 333 ~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~------~p~-~ 399 (519)
+++.+...|...|++++|...|++..+ ..+..+ ...++..+...|...|++++|++.+++. .+ ... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 777888888888888888888888763 211111 1257778888888888888888888776 11 111 4
Q ss_pred HHHHHHHHHHccccCCCCHHHH-HHHHHHHHhh
Q 048578 400 VLWGSLLTACASADDGANVELA-EIAMERLIKL 431 (519)
Q Consensus 400 ~~~~~ll~~~~~~~~~~~~~~a-~~~~~~~~~~ 431 (519)
.++..+...+.. .|++++| ...++++...
T Consensus 237 ~~~~~lg~~y~~---~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRK---LEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHH---TTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---cCCcHHHHHHHHHHHHHH
Confidence 567777777888 8888888 7777777653
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.60 E-value=2.5e-07 Score=72.37 Aligned_cols=97 Identities=12% Similarity=0.031 Sum_probs=74.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 048578 367 VKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSN 444 (519)
Q Consensus 367 ~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 444 (519)
...|..+...+.+.|++++|+..|++. ...| +...|..+..++.. .|++++|...++++++.+|.++.+|..++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK---LMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH---hcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 345666777777888888888887776 4444 45677777777777 888888888888888888888888888888
Q ss_pred HHHhcCCchHHHHHHHHHHhCC
Q 048578 445 IYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 445 ~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
+|...|++++|...+++..+..
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhC
Confidence 8888888888888888876644
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.58 E-value=4.8e-07 Score=73.03 Aligned_cols=104 Identities=13% Similarity=-0.045 Sum_probs=86.4
Q ss_pred CCCCHH-HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHH
Q 048578 327 IKPDDV-TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWG 403 (519)
Q Consensus 327 ~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~ 403 (519)
+.|+.. .+..+...+.+.|++++|...|+++.+. -+.+...|..+..+|...|++++|++.|++. .+.| +...|.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 345443 7778888899999999999999999873 3456788889999999999999999999988 5556 456788
Q ss_pred HHHHHHccccCCCCHHHHHHHHHHHHhhCCCC
Q 048578 404 SLLTACASADDGANVELAEIAMERLIKLEPFN 435 (519)
Q Consensus 404 ~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (519)
.+..++.. .|++++|...|+++++..|++
T Consensus 109 ~lg~~~~~---lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 109 HTGQCQLR---LKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHHHHHH---TTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHH---cCCHHHHHHHHHHHHHhCCCH
Confidence 88888888 999999999999999999874
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.55 E-value=4.3e-07 Score=68.92 Aligned_cols=100 Identities=14% Similarity=0.024 Sum_probs=78.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC--CCchHHH
Q 048578 366 NVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPF--NDGNYVL 441 (519)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~ 441 (519)
+...+..+...+...|++++|...+++. ...| +...+..+...+.. .|++++|...++++++..|. +...+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~---~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYN---LERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 3455666777788888888888888776 3333 45667777777888 88899999999998888888 8888888
Q ss_pred HHHHHHhc-CCchHHHHHHHHHHhCCCc
Q 048578 442 MSNIYAAK-AQWDDAGKMRRLMKERNIV 468 (519)
Q Consensus 442 l~~~~~~~-g~~~~A~~~~~~m~~~~~~ 468 (519)
++.++.+. |++++|.+.+++....+..
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 99999999 9999999998888776554
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=2.6e-07 Score=71.72 Aligned_cols=96 Identities=18% Similarity=0.022 Sum_probs=82.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 048578 369 HYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIY 446 (519)
Q Consensus 369 ~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 446 (519)
.+..+...+.+.|++++|...|++. ...| +...|..+..++.. .|++++|+..++++++++|+++.++..++.+|
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~---~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAE---NEKDGLAIIALNHARMLDPKDIAVHAALAVSH 95 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4556778889999999999999988 5556 56678888888888 99999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHHhCCC
Q 048578 447 AAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 447 ~~~g~~~~A~~~~~~m~~~~~ 467 (519)
...|++++|...+++..+.+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC---
T ss_pred HHcCCHHHHHHHHHHHHHhCc
Confidence 999999999999999876543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.1e-06 Score=69.01 Aligned_cols=100 Identities=14% Similarity=0.049 Sum_probs=89.9
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHH
Q 048578 364 EPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVL 441 (519)
Q Consensus 364 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 441 (519)
+.+...+..+...+...|++++|.+.|++. ...| +...+..+...+.. .|++++|...++++++..|.++.++..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~a~~~~~~~~~~~~~ 89 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK---LLEFQLALKDCEECIQLEPTFIKGYTR 89 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTT---TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH---hccHHHHHHHHHHHHHhCCCchHHHHH
Confidence 345678889999999999999999999998 5566 66788888888988 999999999999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhCC
Q 048578 442 MSNIYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 442 l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
++.+|.+.|++++|.+.+++..+..
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 9999999999999999999987654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.1e-06 Score=77.91 Aligned_cols=124 Identities=8% Similarity=-0.088 Sum_probs=68.7
Q ss_pred HHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCH----HHHHHHHHHHcc
Q 048578 336 AVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNA----VLWGSLLTACAS 411 (519)
Q Consensus 336 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~----~~~~~ll~~~~~ 411 (519)
.+...+...|++++|.+.|+.+.. + .|+......+...+.+.+++++|+..|+.....|+. ..+..+..++..
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~--~-~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPV--A-GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCC--T-TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHh--c-CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHH
Confidence 344555666666666666666654 1 232224444555666666666666666655222222 244445555666
Q ss_pred ccCCCCHHHHHHHHHHHHhhC--CC-CCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048578 412 ADDGANVELAEIAMERLIKLE--PF-NDGNYVLMSNIYAAKAQWDDAGKMRRLMKER 465 (519)
Q Consensus 412 ~~~~~~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 465 (519)
.|++++|+..|+++.... |. .+......+.++.+.|+.++|..+|+++...
T Consensus 184 ---LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 184 ---LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp ---TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ---CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 666666666666665322 22 2335556666666666666666666666553
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.51 E-value=5.1e-07 Score=74.38 Aligned_cols=110 Identities=15% Similarity=0.019 Sum_probs=88.4
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 048578 330 DDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLT 407 (519)
Q Consensus 330 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~ 407 (519)
+...+..+...+...|++++|+..|++..+. .+.+...|..+..+|...|++++|+..|++. .+.| +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3457788888889999999999999988873 3446778888889999999999999998887 5555 4667888888
Q ss_pred HHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 048578 408 ACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSN 444 (519)
Q Consensus 408 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 444 (519)
.+.. .|++++|...++++++++|.++..+...+.
T Consensus 88 ~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 88 ARFD---MADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHH---TTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHH---ccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 8888 889999999999999999888886655443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.51 E-value=4.2e-07 Score=71.20 Aligned_cols=94 Identities=7% Similarity=0.003 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCc-------h
Q 048578 368 KHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDG-------N 438 (519)
Q Consensus 368 ~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~ 438 (519)
..+..+...+.+.|++++|++.|++. .+.| +...|..+..+|.. .|++++|+..++++++++|.+.. +
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~---~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFE---EKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHH---hhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 34556677777777777777777766 4445 34566666667777 77777777777777777765443 5
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHh
Q 048578 439 YVLMSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 439 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
|..++.++...|++++|.+.|++..+
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 56667777777788888887777655
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.1e-06 Score=75.00 Aligned_cols=132 Identities=16% Similarity=0.020 Sum_probs=59.4
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHcHHh---cCCCC--C
Q 048578 297 CTWNSIIGGLAIHGCGEEAVKMFWQMQM----SGIKPD-DVTLIAVLTACSHAGLIEKGKEIFYNMRRD---YKVEP--N 366 (519)
Q Consensus 297 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~----~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~--~ 366 (519)
.++..+...+...|++++|...+++..+ .|..|. ..++..+...+...|++++|...+++..+. .+..+ .
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 106 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA 106 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 3444444455555555555555554432 111111 224455555555555555555555554442 11011 1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhh
Q 048578 367 VKHYGCLVDLLCRARLLDEAYEVIRNM----PMEPN----AVLWGSLLTACASADDGANVELAEIAMERLIKL 431 (519)
Q Consensus 367 ~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~p~----~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~ 431 (519)
...+..+...+...|++++|...+++. ....+ ..++..+...+.. .|++++|...++++++.
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 107 SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQ---EKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH---CcCHHHHHHHHHHHHHH
Confidence 233445555555555555555555443 00011 1123344444555 55555555555555443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.50 E-value=3e-06 Score=75.06 Aligned_cols=135 Identities=12% Similarity=-0.055 Sum_probs=83.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCC--hhHHHHHHHHH
Q 048578 300 NSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPN--VKHYGCLVDLL 377 (519)
Q Consensus 300 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~ 377 (519)
..+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...+. . .|. ...+..+..++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHH
Confidence 34455666777777777777766543 344445555555677777777777777755431 1 111 23566677777
Q ss_pred HhcCChHHHHHHHHhC--CCC-CC-H-HHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHH
Q 048578 378 CRARLLDEAYEVIRNM--PME-PN-A-VLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLM 442 (519)
Q Consensus 378 ~~~~~~~~A~~~~~~~--~~~-p~-~-~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 442 (519)
...|++++|+..|++. +-. |. . ........++.. .|+.++|...|+++...+|. +..+..|
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~---lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRS---QGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 7788888888777776 211 43 2 234444445666 77788888888888887776 5544444
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.50 E-value=8.6e-07 Score=69.23 Aligned_cols=111 Identities=9% Similarity=-0.058 Sum_probs=76.2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 048578 332 VTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTAC 409 (519)
Q Consensus 332 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 409 (519)
..+..+...+.+.|++++|...|++..+. .+.+...|..+..+|.+.|++++|+..+++. .+.| +...+..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 35556666677777777777777777662 3345667777777777777777777777776 4444 355666677777
Q ss_pred ccccCCCCHHHHHHHHHHHHhhC------CCCCchHHHHHHHHH
Q 048578 410 ASADDGANVELAEIAMERLIKLE------PFNDGNYVLMSNIYA 447 (519)
Q Consensus 410 ~~~~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~ 447 (519)
.. .|++++|...++++++.+ |.++.++..+..+..
T Consensus 83 ~~---~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 83 IA---VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HH---TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HH---HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 77 778888888888888877 666666665555443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=1.8e-06 Score=66.11 Aligned_cols=108 Identities=16% Similarity=0.025 Sum_probs=61.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHc
Q 048578 333 TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACA 410 (519)
Q Consensus 333 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 410 (519)
.+..+...+...|++++|...|++.... .+.+...+..+...+...|++++|...+++. ...| +...+..+...+.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4445555555666666666666665552 2234455555566666666666666666555 2233 3445555555566
Q ss_pred cccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 048578 411 SADDGANVELAEIAMERLIKLEPFNDGNYVLMSNI 445 (519)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 445 (519)
. .|++++|...++++.+.+|.++..+..+..+
T Consensus 84 ~---~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 84 F---LNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp H---TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred H---HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 6 6666666666666666666665555555443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.1e-06 Score=73.40 Aligned_cols=127 Identities=9% Similarity=0.007 Sum_probs=98.7
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHH-HHhcCCh--
Q 048578 307 AIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDL-LCRARLL-- 383 (519)
Q Consensus 307 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~-- 383 (519)
...|++++|...+++..+.. +.+...+..+..+|...|++++|...|++..+. .+.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcch
Confidence 35678888888888887653 446678888999999999999999999998873 23466778888888 7788998
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchH
Q 048578 384 DEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNY 439 (519)
Q Consensus 384 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 439 (519)
++|...+++. ...| +...+..+...+.. .|++++|...++++++..|.++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFM---QANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH---cccHHHHHHHHHHHHhhCCCCccHH
Confidence 9999999888 4455 45677778888888 8999999999999999999876543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.49 E-value=8.5e-07 Score=75.65 Aligned_cols=96 Identities=11% Similarity=-0.076 Sum_probs=72.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 048578 368 KHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNI 445 (519)
Q Consensus 368 ~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 445 (519)
..|..+..+|...|++++|+..+++. .+.| +...+..+..++.. .|++++|...++++++.+|.++.++..+..+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 165 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMY---FGFLEEAKENLYKAASLNPNNLDIRNSYELC 165 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH---cccHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence 67778888888999999999988887 4444 56678888888888 8999999999999999999999999999999
Q ss_pred HHhcCCchHHH-HHHHHHHhCC
Q 048578 446 YAAKAQWDDAG-KMRRLMKERN 466 (519)
Q Consensus 446 ~~~~g~~~~A~-~~~~~m~~~~ 466 (519)
+...|+.+++. ..+..|-..+
T Consensus 166 ~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 166 VNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHHHHhccc
Confidence 99988888777 5565554433
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.48 E-value=1.5e-06 Score=68.95 Aligned_cols=99 Identities=14% Similarity=0.052 Sum_probs=78.8
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHH
Q 048578 365 PNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLM 442 (519)
Q Consensus 365 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 442 (519)
.+...+..+...+...|++++|...|++. ...| +...+..+...+.. .|++++|...++++++.+|.++.++..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK---MQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHH---hcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 45667777788888888888888888776 3344 45677777777888 8888888888888888888888888888
Q ss_pred HHHHHhcCCchHHHHHHHHHHhCC
Q 048578 443 SNIYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 443 ~~~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
+.+|...|++++|...+++..+..
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHC
Confidence 888888888888888888887644
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.4e-06 Score=71.77 Aligned_cols=95 Identities=15% Similarity=-0.071 Sum_probs=60.7
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHH
Q 048578 296 VCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVD 375 (519)
Q Consensus 296 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 375 (519)
...+..+...+...|++++|+..|++..+.. +-+...+..+..++...|++++|+..|++..+. .+.+...|..+..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 3455666666667777777777777666542 224556666666677777777777777766662 2334566666667
Q ss_pred HHHhcCChHHHHHHHHhC
Q 048578 376 LLCRARLLDEAYEVIRNM 393 (519)
Q Consensus 376 ~~~~~~~~~~A~~~~~~~ 393 (519)
+|...|++++|.+.|++.
T Consensus 88 ~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHH
Confidence 777777777777766665
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.48 E-value=5.9e-07 Score=71.95 Aligned_cols=105 Identities=13% Similarity=-0.006 Sum_probs=79.3
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHc
Q 048578 333 TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACA 410 (519)
Q Consensus 333 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 410 (519)
.+..+...+.+.|++++|...|+.+... .+.+...|..+..+|...|++++|+..|++. .+.| +...+..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 5666677778888888888888888762 3446677778888888888888888888877 4444 4456667777788
Q ss_pred cccCCCCHHHHHHHHHHHHhhCCCCCchHHHH
Q 048578 411 SADDGANVELAEIAMERLIKLEPFNDGNYVLM 442 (519)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 442 (519)
. .|++++|...++++++..|.++......
T Consensus 98 ~---~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 98 Q---LGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp H---TTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred H---cCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 8 8889999999999888888777665543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.48 E-value=6.4e-07 Score=81.16 Aligned_cols=92 Identities=7% Similarity=-0.107 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCC--C-chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 048578 166 SLTRLITFYCNFGDVKSAQLLFDQMTE--K-NVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACAN 242 (519)
Q Consensus 166 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 242 (519)
.+..+...+...|++++|...|++... | +...|..+..+|.+.|++++|...+++..+.. +.+...+..+..++..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 84 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLE 84 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 344444455555555555555554432 2 34445555555555555555555555554432 1233344444444555
Q ss_pred cCChHHHHHHHHHHHH
Q 048578 243 LGASELGKWVHEFVNK 258 (519)
Q Consensus 243 ~~~~~~a~~~~~~~~~ 258 (519)
.|++++|...++...+
T Consensus 85 ~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 85 MESYDEAIANLQRAYS 100 (281)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555444443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.8e-06 Score=73.66 Aligned_cols=84 Identities=10% Similarity=-0.047 Sum_probs=46.3
Q ss_pred HhcCChHHHHH---HHhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCCh
Q 048578 175 CNFGDVKSAQL---LFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDS----GVEV-NELTLVSVLSACANLGAS 246 (519)
Q Consensus 175 ~~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~ 246 (519)
...|++++|.+ .+..-......++..+...+...|++++|...+++.... +..+ ...++..+...+...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 34577777777 554433234556677777777777777777777766541 1111 223444555555666666
Q ss_pred HHHHHHHHHHHH
Q 048578 247 ELGKWVHEFVNK 258 (519)
Q Consensus 247 ~~a~~~~~~~~~ 258 (519)
+.|...+++..+
T Consensus 83 ~~A~~~~~~al~ 94 (203)
T 3gw4_A 83 DAARRCFLEERE 94 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666555444
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=0.00013 Score=66.96 Aligned_cols=173 Identities=9% Similarity=-0.053 Sum_probs=105.8
Q ss_pred HHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-ChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhc-C-CHH
Q 048578 206 VKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLG-ASELGKWVHEFVNKNCIILNDKLGAALTDMYAKC-G-YIE 282 (519)
Q Consensus 206 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~ 282 (519)
.+.+..++|+++++.+...+ +-+...|+.--.++...+ +++++..+++.+...+ +-+..+++.-..++... + +++
T Consensus 65 ~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCH
T ss_pred HhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChH
Confidence 34444567777777777653 123444555555555556 4777777777777655 44555555555555554 5 677
Q ss_pred HHHHHHhhcCCC---ChhhHHHHHHHHHHcCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc-----
Q 048578 283 EALRVFKIVLEK---NVCTWNSIIGGLAIHGCGE--------EAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGL----- 346 (519)
Q Consensus 283 ~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~--------~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~----- 346 (519)
+++++++++.+. |..+|+.-.-.+.+.|.++ ++++.++++.+.. .-|...|+.....+.+.+.
T Consensus 143 ~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccch
Confidence 788888777664 4445555444444445555 7778888877654 4456677777666666665
Q ss_pred --HHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCCh
Q 048578 347 --IEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLL 383 (519)
Q Consensus 347 --~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 383 (519)
++++++.+++... ..+-|...|+.+-..+.+.|+.
T Consensus 222 ~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 222 RSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCC
Confidence 5677777777766 2345566676666666655543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=1.2e-05 Score=73.79 Aligned_cols=219 Identities=13% Similarity=0.022 Sum_probs=154.9
Q ss_pred ccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcC-CHHHHHHHHhhcCCC---ChhhHHHHHHHHHHc-C-ChHHH
Q 048578 242 NLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCG-YIEEALRVFKIVLEK---NVCTWNSIIGGLAIH-G-CGEEA 315 (519)
Q Consensus 242 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~-g-~~~~a 315 (519)
+.+..+.|..+.+.++..+ +-+..+++.--.++...| .+++++++++.+... +..+|+.-...+... + +++++
T Consensus 66 ~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred hCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHH
Confidence 3445667888899988876 556667777777777778 599999999998654 556777777677666 7 89999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH--------HHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCC-----
Q 048578 316 VKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIE--------KGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARL----- 382 (519)
Q Consensus 316 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----- 382 (519)
+++++++.+.. +-|...|+.-...+.+.|.++ ++++.++++.+. .+-|...|+.....+.+.++
T Consensus 145 L~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 145 IEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccch
Confidence 99999998754 446667776665665555555 899999999883 45677889988888888876
Q ss_pred --hHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCC-----------------CHHHHHHHHHHHHhhC------CCC
Q 048578 383 --LDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGA-----------------NVELAEIAMERLIKLE------PFN 435 (519)
Q Consensus 383 --~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~-----------------~~~~a~~~~~~~~~~~------p~~ 435 (519)
++++++.++++ ...| |...|+.+-..+...+... ...........+.... +.+
T Consensus 222 ~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 301 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPV 301 (349)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCC
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCc
Confidence 68888888877 5566 5556766555555522110 1233333333333222 456
Q ss_pred CchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048578 436 DGNYVLMSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 436 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
+.++..++.+|...|+.++|.++++.+.+
T Consensus 302 ~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 302 PLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 77888999999999999999999999864
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.8e-06 Score=69.33 Aligned_cols=95 Identities=13% Similarity=-0.007 Sum_probs=53.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHH
Q 048578 367 VKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPN----AVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVL 441 (519)
Q Consensus 367 ~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 441 (519)
...+..+...+...|++++|.+.|++. ...|+ ...+..+...+.. .|++++|...++++++..|.++..+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLK---LEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH---HccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 344555555555555555555555554 44444 3344445455555 556666666666666665555555556
Q ss_pred HHHHHHhcCCchHHHHHHHHHHh
Q 048578 442 MSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 442 l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
++.+|...|++++|...+++..+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666655544
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.46 E-value=2.6e-06 Score=69.88 Aligned_cols=127 Identities=9% Similarity=-0.117 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHH
Q 048578 298 TWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLL 377 (519)
Q Consensus 298 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (519)
.+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+. .+.+...|..+..++
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence 45556666667777777777777766542 334566777777777777777777777777662 234566677777777
Q ss_pred HhcCChHHHHHHHHhC-CCCC-CHHHHHH--HHHHHccccCCCCHHHHHHHHHHHHh
Q 048578 378 CRARLLDEAYEVIRNM-PMEP-NAVLWGS--LLTACASADDGANVELAEIAMERLIK 430 (519)
Q Consensus 378 ~~~~~~~~A~~~~~~~-~~~p-~~~~~~~--ll~~~~~~~~~~~~~~a~~~~~~~~~ 430 (519)
...|++++|...+++. ...| +...+.. ....+.. .|++++|...+++..+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~---~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK---QKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH---HHHHHHHHHcccchHH
Confidence 7777777777777776 3333 3333322 2222455 6677777777776544
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.45 E-value=1.5e-06 Score=67.28 Aligned_cols=97 Identities=21% Similarity=0.265 Sum_probs=87.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 048578 367 VKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSN 444 (519)
Q Consensus 367 ~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 444 (519)
...+..+...+...|++++|.+.++++ ...| +..++..+...+.. .|++++|...++++.+..|.++..+..++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK---QGDYDEAIEYYQKALELDPNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 567888999999999999999999988 3334 56788888888999 999999999999999999999999999999
Q ss_pred HHHhcCCchHHHHHHHHHHhCC
Q 048578 445 IYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 445 ~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
+|...|++++|...++++.+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhcCHHHHHHHHHHHHHhC
Confidence 9999999999999999987654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.44 E-value=1.9e-06 Score=65.95 Aligned_cols=99 Identities=14% Similarity=0.122 Sum_probs=87.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHH
Q 048578 366 NVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMS 443 (519)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 443 (519)
....+..++..+...|++++|...+++. ...| +...+..+...+.. .|++++|...++++.+..|.++..+..++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 79 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAK---KGDYQKAYEDGCKTVDLKPDWGKGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh---hccHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 4567788899999999999999999998 4445 66778888888888 89999999999999999999999999999
Q ss_pred HHHHhcCCchHHHHHHHHHHhCCC
Q 048578 444 NIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
.++...|++++|.+.+++..+.+.
T Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~~ 103 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEGLKHEA 103 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHhhHHHHHHHHHHHHHcCC
Confidence 999999999999999999877543
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=9.1e-05 Score=67.59 Aligned_cols=197 Identities=10% Similarity=-0.025 Sum_probs=108.6
Q ss_pred hHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcC--CHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCC-hHHHHHHH
Q 048578 246 SELGKWVHEFVNKNCIILNDKLGAALTDMYAKCG--YIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGC-GEEAVKMF 319 (519)
Q Consensus 246 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~-~~~a~~~~ 319 (519)
++.+..+++.+...+ |-+..+++.-.-++...| .+++++.+++++.+ .|..+|+.-.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 345555566655544 445555555444455555 36666666666644 355566655555566666 46777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhcc--------------CcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhc-----
Q 048578 320 WQMQMSGIKPDDVTLIAVLTACSHA--------------GLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRA----- 380 (519)
Q Consensus 320 ~~m~~~g~~p~~~~~~~l~~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 380 (519)
+++++.. +-|...|+.....+... +.++++++.+..... -.+-|...|+.+-..+.+.
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccCccc
Confidence 7776654 33445555544444333 346677777777665 2344556665544444443
Q ss_pred ------CChHHHHHHHHhC-CCCCCH-HHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 048578 381 ------RLLDEAYEVIRNM-PMEPNA-VLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIY 446 (519)
Q Consensus 381 ------~~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 446 (519)
+.++++++.++++ .+.|+. ..+..++.........+..+++...+.++++++|....-|..+...+
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 3456677777666 445543 22222221111111156677777788888888877555555554433
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.37 E-value=2.1e-06 Score=67.96 Aligned_cols=113 Identities=9% Similarity=-0.096 Sum_probs=79.4
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 048578 329 PDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLL 406 (519)
Q Consensus 329 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll 406 (519)
.+...+..+...+...|++++|...|+...+. .+.+...|..+..++...|++++|...+++. .+.| +...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 34567777777777888888888888777762 2345667777788888888888888887776 3344 455677777
Q ss_pred HHHccccCCCCHHHHHHHHHHHHhhCCC-----CCchHHHHHHHH
Q 048578 407 TACASADDGANVELAEIAMERLIKLEPF-----NDGNYVLMSNIY 446 (519)
Q Consensus 407 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~-----~~~~~~~l~~~~ 446 (519)
..+.. .|++++|...++++++..|. +......+..+.
T Consensus 85 ~~~~~---~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 85 QCQLE---MESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HHHHH---TTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred HHHHH---HhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 77777 88888888888888887766 444444444433
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=2.3e-06 Score=66.80 Aligned_cols=99 Identities=16% Similarity=0.106 Sum_probs=88.1
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHH
Q 048578 365 PNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLM 442 (519)
Q Consensus 365 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 442 (519)
.+...+..+...+...|++++|.+.+++. ...| +...+..+...+.. .|++++|...++++.+..|.++..+..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 86 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSK---LGNYAGAVQDCERAICIDPAYSKAYGRM 86 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH---hhchHHHHHHHHHHHhcCccCHHHHHHH
Confidence 34567888899999999999999999988 4344 66788888888988 9999999999999999999999999999
Q ss_pred HHHHHhcCCchHHHHHHHHHHhCC
Q 048578 443 SNIYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 443 ~~~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
+.+|...|++++|.+.+++..+..
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcC
Confidence 999999999999999999987753
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.33 E-value=1.1e-06 Score=86.01 Aligned_cols=120 Identities=10% Similarity=-0.003 Sum_probs=96.3
Q ss_pred HHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccC
Q 048578 337 VLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADD 414 (519)
Q Consensus 337 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~ 414 (519)
+...+.+.|++++|.+.|++..+. .+.+...|..+..+|.+.|++++|++.+++. .+.| +...+..+..++..
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~--- 86 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA--- 86 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH---
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---
Confidence 344567788999999999988873 3445788888999999999999999999888 5556 56678888888888
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCchHHHHHHH--HHhcCCchHHHHHHHH
Q 048578 415 GANVELAEIAMERLIKLEPFNDGNYVLMSNI--YAAKAQWDDAGKMRRL 461 (519)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 461 (519)
.|++++|.+.++++++.+|.+..++..++.+ +.+.|++++|.+.+++
T Consensus 87 ~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 8999999999999999999999999998888 8888999999999873
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.33 E-value=7.4e-06 Score=65.64 Aligned_cols=112 Identities=12% Similarity=-0.018 Sum_probs=75.8
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHH
Q 048578 330 DDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPN----VKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWG 403 (519)
Q Consensus 330 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~ 403 (519)
+...+..+...+...|++++|...|++..+ ..|+ ...|..+..+|...|++++|...+++. ...| +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 345666666667777777777777777665 2333 456666777777777777777777766 3334 455666
Q ss_pred HHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 048578 404 SLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYA 447 (519)
Q Consensus 404 ~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 447 (519)
.+...+.. .|++++|...++++++.+|.+...+..+..+..
T Consensus 104 ~~a~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 104 RRSQALEK---LGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHH---HTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHH---cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 66667777 778888888888888888877666666655543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.32 E-value=2.2e-06 Score=68.49 Aligned_cols=93 Identities=13% Similarity=-0.052 Sum_probs=69.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCCC-------------HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhh-----
Q 048578 371 GCLVDLLCRARLLDEAYEVIRNM-PMEPN-------------AVLWGSLLTACASADDGANVELAEIAMERLIKL----- 431 (519)
Q Consensus 371 ~~l~~~~~~~~~~~~A~~~~~~~-~~~p~-------------~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~----- 431 (519)
......+...|++++|++.|++. .+.|+ ...|..+..++.. .|++++|+..+++++++
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~---Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG---LRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHhhhccc
Confidence 33444455555555555555544 22222 2377777777888 88899999999999888
Q ss_pred --CCCCCchH----HHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048578 432 --EPFNDGNY----VLMSNIYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 432 --~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
+|++..+| ...+.++...|++++|+..|++..+..
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99999999 999999999999999999999987643
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.31 E-value=3.6e-06 Score=63.64 Aligned_cols=99 Identities=15% Similarity=0.021 Sum_probs=64.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC---CHHHHHHHHHH
Q 048578 333 TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP---NAVLWGSLLTA 408 (519)
Q Consensus 333 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p---~~~~~~~ll~~ 408 (519)
.+..+...+...|++++|...|++..+. .+.+...+..+..++...|++++|.+.+++. ...| +...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 4455556666667777777776666652 2334556666677777777777777777666 3333 35566666666
Q ss_pred HccccCC-CCHHHHHHHHHHHHhhCCCCC
Q 048578 409 CASADDG-ANVELAEIAMERLIKLEPFND 436 (519)
Q Consensus 409 ~~~~~~~-~~~~~a~~~~~~~~~~~p~~~ 436 (519)
+.. . |++++|.+.++++.+..|.++
T Consensus 86 ~~~---~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRY---IEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTT---CSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHH---HhCCHHHHHHHHHHHhhcccCCC
Confidence 777 7 777777777777777776643
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.30 E-value=5.4e-06 Score=80.70 Aligned_cols=129 Identities=12% Similarity=0.024 Sum_probs=92.8
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCC-------------ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-
Q 048578 333 TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEP-------------NVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP- 397 (519)
Q Consensus 333 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p- 397 (519)
.+..+...+.+.|++++|+..|++..+.....+ ....|..+..+|.+.|++++|+..+++. .+.|
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 349 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 444445555555555555555555544211110 1467888999999999999999999888 4455
Q ss_pred CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHH-HHHHHHh
Q 048578 398 NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGK-MRRLMKE 464 (519)
Q Consensus 398 ~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~m~~ 464 (519)
+...|..+..++.. .|++++|...|+++++++|.+..++..++.++.+.|++++|.+ .+++|-.
T Consensus 350 ~~~a~~~~g~a~~~---~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 350 NEKGLYRRGEAQLL---MNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp CHHHHHHHHHHHHH---TTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56788888889999 9999999999999999999999999999999999999998875 4555543
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.30 E-value=2.2e-06 Score=67.03 Aligned_cols=109 Identities=4% Similarity=-0.080 Sum_probs=62.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC----CCC----HHHHH
Q 048578 333 TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PM----EPN----AVLWG 403 (519)
Q Consensus 333 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~----~p~----~~~~~ 403 (519)
.+..+...+...|++++|...|++..+. .+.+...+..+...+...|++++|...+++. .. .++ ..++.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 4445555555566666666666655552 2334455555666666666666666666555 11 112 44555
Q ss_pred HHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 048578 404 SLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYA 447 (519)
Q Consensus 404 ~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 447 (519)
.+...+.. .|++++|...++++.+..| ++.....+..+..
T Consensus 84 ~la~~~~~---~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 84 RIGNSYFK---EEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHH---TTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHH---hccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 66666666 6777777777777777766 3555555554443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.30 E-value=2.4e-06 Score=66.83 Aligned_cols=89 Identities=15% Similarity=0.115 Sum_probs=43.9
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCC---CchHHHHHH
Q 048578 373 LVDLLCRARLLDEAYEVIRNM-PMEPNA----VLWGSLLTACASADDGANVELAEIAMERLIKLEPFN---DGNYVLMSN 444 (519)
Q Consensus 373 l~~~~~~~~~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 444 (519)
+...+...|++++|...|++. ...|+. ..+..+...+.. .|++++|...++++++..|++ +.++..++.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~---~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYA---TRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH---hccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 334444455555555555444 112211 233344444444 555555555555555555555 444555555
Q ss_pred HHHhcCCchHHHHHHHHHHh
Q 048578 445 IYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 445 ~~~~~g~~~~A~~~~~~m~~ 464 (519)
+|...|++++|...++++.+
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555544
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.6e-05 Score=76.93 Aligned_cols=162 Identities=6% Similarity=-0.131 Sum_probs=90.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHcHHh---cCCCC-ChhH
Q 048578 299 WNSIIGGLAIHGCGEEAVKMFWQMQMS-GIKPDD----VTLIAVLTACSHAGLIEKGKEIFYNMRRD---YKVEP-NVKH 369 (519)
Q Consensus 299 ~~~l~~~~~~~g~~~~a~~~~~~m~~~-g~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~-~~~~ 369 (519)
+..+...|...|++++|.+.+.++... +..++. .+.+.+...+...|+++.|..++...... .+..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 455566666666666666666665431 111111 12233333444556677777666655431 11111 2345
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-----C--CCCC-HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhC---CCC---
Q 048578 370 YGCLVDLLCRARLLDEAYEVIRNM-----P--MEPN-AVLWGSLLTACASADDGANVELAEIAMERLIKLE---PFN--- 435 (519)
Q Consensus 370 ~~~l~~~~~~~~~~~~A~~~~~~~-----~--~~p~-~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~---p~~--- 435 (519)
+..++..|...|++++|..++++. + .+|. ..++..++..|.. .|++++|..+++++.... +.+
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~A~~~~~~al~~~~~~~~~~~~ 214 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHK---LRNLAKSKASLTAARTAANSIYCPTQT 214 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH---hCcHHHHHHHHHHHHHHhhcCCCchHH
Confidence 666777777777777777776655 1 1222 2356666666777 777777777777766543 211
Q ss_pred -CchHHHHHHHHHhcCCchHHHHHHHHHH
Q 048578 436 -DGNYVLMSNIYAAKAQWDDAGKMRRLMK 463 (519)
Q Consensus 436 -~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (519)
...+..++..+...|++++|...+.+..
T Consensus 215 ~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 215 VAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 2345566666667777777777665554
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.28 E-value=3e-06 Score=66.23 Aligned_cols=96 Identities=11% Similarity=0.003 Sum_probs=45.6
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC----C----HHHHHH
Q 048578 334 LIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP----N----AVLWGS 404 (519)
Q Consensus 334 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p----~----~~~~~~ 404 (519)
+..+...+.+.|++++|+..|++..+. .+.+...|..+..+|...|++++|++.+++. .+.| + ..+|..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 334444444444444444444444441 1223344444444455555555554444443 1111 1 123444
Q ss_pred HHHHHccccCCCCHHHHHHHHHHHHhhCCC
Q 048578 405 LLTACASADDGANVELAEIAMERLIKLEPF 434 (519)
Q Consensus 405 ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (519)
+...+.. .|++++|++.|+++++..|+
T Consensus 89 lg~~~~~---~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 89 AGNAFQK---QNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHH---TTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHH---cCCHHHHHHHHHHHHhhCcC
Confidence 4455555 66666666666666666553
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00015 Score=66.14 Aligned_cols=184 Identities=11% Similarity=0.036 Sum_probs=132.5
Q ss_pred HHHHHHHHhhcCC---CChhhHHHHHHHHHHcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc-HHHHHHHH
Q 048578 281 IEEALRVFKIVLE---KNVCTWNSIIGGLAIHG--CGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGL-IEKGKEIF 354 (519)
Q Consensus 281 ~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~-~~~a~~~~ 354 (519)
+++++.+++.+.. .+..+|+.-.-.+...| .+++++.+++++.+.. +-|...|+.-...+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 5677777777754 46677887777777777 4899999999998865 5567788777777777887 68999999
Q ss_pred HHcHHhcCCCCChhHHHHHHHHHHhc--------------CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccC----
Q 048578 355 YNMRRDYKVEPNVKHYGCLVDLLCRA--------------RLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADD---- 414 (519)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~---- 414 (519)
+.+.+. .+-|...|+.....+... +.++++++.+++. ...| |...|+.+-..+.....
T Consensus 169 ~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 999883 456777888777776665 4578888888887 4556 55566655544444100
Q ss_pred ----CCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH---HhcCCchHHHHHHHHHHhCCC
Q 048578 415 ----GANVELAEIAMERLIKLEPFNDGNYVLMSNIY---AAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 415 ----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~A~~~~~~m~~~~~ 467 (519)
.+.++++++.++++++..|++.-.+..++... ...|..+++...+.++++.+.
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCc
Confidence 04588999999999999999744444333322 245778889999999987444
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.27 E-value=1.1e-05 Score=62.94 Aligned_cols=104 Identities=14% Similarity=0.066 Sum_probs=65.8
Q ss_pred HHHHHHhccCcHHHHHHHHHHcHHhcCCCCCh---hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 048578 336 AVLTACSHAGLIEKGKEIFYNMRRDYKVEPNV---KHYGCLVDLLCRARLLDEAYEVIRNM-PMEPN----AVLWGSLLT 407 (519)
Q Consensus 336 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~----~~~~~~ll~ 407 (519)
.+...+...|++++|...|+.+.+. .+.+. ..+..+..++...|++++|...|++. ...|+ ...+..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 3445566667777777777776652 12222 35666677777777777777777666 33333 345666666
Q ss_pred HHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 048578 408 ACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSN 444 (519)
Q Consensus 408 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 444 (519)
.+.. .|++++|...++++++..|+++........
T Consensus 85 ~~~~---~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~ 118 (129)
T 2xev_A 85 SQYG---EGKNTEAQQTLQQVATQYPGSDAARVAQER 118 (129)
T ss_dssp HHHH---TTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred HHHH---cCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 6777 778888888888888888776555444333
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.25 E-value=0.00024 Score=68.48 Aligned_cols=189 Identities=6% Similarity=-0.113 Sum_probs=134.8
Q ss_pred HHHHHhcCChHHHHHHHhcCCC--C---c---------------hhHHHHHHHHHHHcCChhHHHHHHHHHHhC-CCCCC
Q 048578 171 ITFYCNFGDVKSAQLLFDQMTE--K---N---------------VVTWTAMINGHVKQKNYREGIDLFRKMRDS-GVEVN 229 (519)
Q Consensus 171 ~~~~~~~g~~~~A~~~~~~~~~--~---~---------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~ 229 (519)
...+.+.|++++|++.|..+.+ + + ..++..+...|...|++++|.+.+..+... +..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3456778999999999887643 1 1 124677889999999999999999887653 11122
Q ss_pred HH----HHHHHHHHHhccCChHHHHHHHHHHHHc----C-CCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC----C--
Q 048578 230 EL----TLVSVLSACANLGASELGKWVHEFVNKN----C-IILNDKLGAALTDMYAKCGYIEEALRVFKIVLE----K-- 294 (519)
Q Consensus 230 ~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~-- 294 (519)
.. +.+.+-..+...|+.+.+..++...... + ...-..++..+...|...|++++|..++.++.. .
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 21 2233334455678899999888877542 2 223356778899999999999999999887622 1
Q ss_pred ---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHcHH
Q 048578 295 ---NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMS----GIKPD--DVTLIAVLTACSHAGLIEKGKEIFYNMRR 359 (519)
Q Consensus 295 ---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 359 (519)
...++..++..|...|++++|..++++.... +..|. ...+..+...+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2357888899999999999999999887532 21222 23567777788899999999988877755
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=5.3e-06 Score=70.59 Aligned_cols=117 Identities=15% Similarity=-0.025 Sum_probs=56.7
Q ss_pred HHHHhcCChHHHHHHHhcCCC---CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CC--------------HHHH
Q 048578 172 TFYCNFGDVKSAQLLFDQMTE---KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVE-VN--------------ELTL 233 (519)
Q Consensus 172 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~--------------~~~~ 233 (519)
......|+++++.+.|+.... .....+..+...+...|++++|...|++....... |+ ...+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp ----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 334455666666666654433 23446777788888999999999999888764211 10 1344
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHh
Q 048578 234 VSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFK 289 (519)
Q Consensus 234 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 289 (519)
..+..++...|+++.|...++...+.. +.+...+..+..+|...|++++|...|+
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 146 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLY 146 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 444444444455555554444444432 2233333333344444444444443333
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.22 E-value=2e-05 Score=73.30 Aligned_cols=151 Identities=11% Similarity=-0.056 Sum_probs=71.5
Q ss_pred CChHHHHHHHhcCCC--C-chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 048578 178 GDVKSAQLLFDQMTE--K-NVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHE 254 (519)
Q Consensus 178 g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 254 (519)
+++++|...|+.... | +...|..+...+.+.|++++|+..|++..+....... + ..+.+..+-
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--~-----------~~~~~~~~~- 192 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS--F-----------SNEEAQKAQ- 192 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC--C-----------CSHHHHHHH-
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhcccc--C-----------ChHHHHHHH-
Confidence 334444444444332 2 3456777777788888888888888877765322110 0 000000000
Q ss_pred HHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 048578 255 FVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDD 331 (519)
Q Consensus 255 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 331 (519)
+.....+..+..+|.+.|++++|+..|+++.+ .+..+|..+..++...|++++|...|++..+.. +-+.
T Consensus 193 -------~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~ 264 (336)
T 1p5q_A 193 -------ALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNK 264 (336)
T ss_dssp -------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCH
T ss_pred -------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCH
Confidence 00122333344444444444444444444322 234445555555555555555555555555431 2233
Q ss_pred HHHHHHHHHHhccCcHHHH
Q 048578 332 VTLIAVLTACSHAGLIEKG 350 (519)
Q Consensus 332 ~~~~~l~~~~~~~g~~~~a 350 (519)
..+..+..++...|+.++|
T Consensus 265 ~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 265 AAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.21 E-value=4e-06 Score=64.85 Aligned_cols=93 Identities=9% Similarity=0.035 Sum_probs=43.5
Q ss_pred HHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccC
Q 048578 337 VLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADD 414 (519)
Q Consensus 337 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~ 414 (519)
+...+.+.|++++|...|++..+. .+.+...|..+..++...|++++|+..|++. .+.| +...+..+...+..
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~--- 97 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN--- 97 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---
Confidence 333444455555555555555441 2223444555555555555555555555544 3333 23344444444555
Q ss_pred CCCHHHHHHHHHHHHhhCCC
Q 048578 415 GANVELAEIAMERLIKLEPF 434 (519)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~p~ 434 (519)
.|++++|...++++++.+|.
T Consensus 98 ~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHC----
T ss_pred cCCHHHHHHHHHHHHHhCcC
Confidence 55555555555555555554
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.21 E-value=3.2e-06 Score=66.04 Aligned_cols=96 Identities=14% Similarity=0.111 Sum_probs=84.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCC-------Cc
Q 048578 367 VKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFN-------DG 437 (519)
Q Consensus 367 ~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~ 437 (519)
...+..+...+...|++++|...|++. ...| +...+..+...+.. .|++++|...++++.+..|.+ +.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE---KGDYNKCRELCEKAIEVGRENREDYRQIAK 80 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH---hccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence 456788899999999999999999988 3344 66778888888888 999999999999999998766 77
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048578 438 NYVLMSNIYAAKAQWDDAGKMRRLMKER 465 (519)
Q Consensus 438 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 465 (519)
++..++.+|...|++++|.+.+++..+.
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 8999999999999999999999998774
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.20 E-value=7.3e-06 Score=77.21 Aligned_cols=90 Identities=8% Similarity=-0.018 Sum_probs=79.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHH
Q 048578 366 NVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMS 443 (519)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 443 (519)
+...|..+..+|.+.|++++|++.+++. .+.| +...+..+..++.. .|++++|...++++++++|.+..++..+.
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~---~g~~~eA~~~l~~Al~l~P~~~~~~~~l~ 348 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQG---LKEYDQALADLKKAQEIAPEDKAIQAELL 348 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4568888999999999999999999988 6666 56688888888999 99999999999999999999999999999
Q ss_pred HHHHhcCCchHHHHH
Q 048578 444 NIYAAKAQWDDAGKM 458 (519)
Q Consensus 444 ~~~~~~g~~~~A~~~ 458 (519)
.++...++.+++.+.
T Consensus 349 ~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 349 KVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999888877653
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.20 E-value=2.7e-06 Score=79.26 Aligned_cols=148 Identities=14% Similarity=-0.026 Sum_probs=76.5
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHH
Q 048578 297 CTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDL 376 (519)
Q Consensus 297 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 376 (519)
..+..+...+.+.|++++|...|++.... .|+... +...|+.+++...+ . ...|..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHHH
Confidence 34555666666777777777777776653 344331 22333333333221 1 1367788888
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH-HhcCCch
Q 048578 377 LCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIY-AAKAQWD 453 (519)
Q Consensus 377 ~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 453 (519)
|.+.|++++|+..+++. .+.| +...|..+..++.. .|++++|...|+++++++|.++.++..+..+. ...+..+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~---~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAE---LGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT---TTCHHHHHHHHHHTTC------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998887 4455 56688888888888 89999999999999999999888888888874 4556777
Q ss_pred HHHHHHHHHHhCCC
Q 048578 454 DAGKMRRLMKERNI 467 (519)
Q Consensus 454 ~A~~~~~~m~~~~~ 467 (519)
++..+|++|.....
T Consensus 317 ~a~~~~~~~l~~~p 330 (338)
T 2if4_A 317 KQKEMYKGIFKGKD 330 (338)
T ss_dssp --------------
T ss_pred HHHHHHHHhhCCCC
Confidence 88888888865443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.19 E-value=4.4e-06 Score=68.04 Aligned_cols=129 Identities=13% Similarity=-0.065 Sum_probs=79.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC----HH
Q 048578 333 TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPN----VKHYGCLVDLLCRARLLDEAYEVIRNM----PMEPN----AV 400 (519)
Q Consensus 333 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~p~----~~ 400 (519)
++..+...+...|++++|...+++..+...-.++ ..++..+...+...|++++|.+.+++. ...++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4444555555555666665555555431100011 135556666666677777776666654 10111 23
Q ss_pred HHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC------CCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048578 401 LWGSLLTACASADDGANVELAEIAMERLIKLEPF------NDGNYVLMSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 401 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
.+..+...+.. .|++++|...++++++..+. ...++..++.+|...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~---~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTL---LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 55556666777 78888888888887765321 245677889999999999999999888764
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.18 E-value=3.8e-06 Score=68.86 Aligned_cols=77 Identities=17% Similarity=0.054 Sum_probs=58.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCC-chHHHHH
Q 048578 367 VKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFND-GNYVLMS 443 (519)
Q Consensus 367 ~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~-~~~~~l~ 443 (519)
...|..+..+|.+.|++++|+..+++. .+.| +...|..+..++.. .|++++|...++++++++|.++ .+...+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~---~g~~~~A~~~~~~al~l~p~~~~~~~~~l~ 139 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIA---AWKLDEAEEDLKLLLRNHPAAASVVAREMK 139 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH---HhcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 457777888888888888888888877 4455 45677778888888 8889999999999999888876 4444444
Q ss_pred HHH
Q 048578 444 NIY 446 (519)
Q Consensus 444 ~~~ 446 (519)
.+.
T Consensus 140 ~~~ 142 (162)
T 3rkv_A 140 IVT 142 (162)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.18 E-value=4.6e-06 Score=68.36 Aligned_cols=65 Identities=15% Similarity=0.145 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048578 399 AVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 399 ~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
...|..+..++.. .|++++|...++++++++|.++.+|..++.+|...|++++|...|++..+..
T Consensus 63 ~~~~~nla~~~~~---~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 63 IPLYANMSQCYLN---IGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHh---cCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 3577778888888 9999999999999999999999999999999999999999999999987753
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.6e-06 Score=66.68 Aligned_cols=82 Identities=11% Similarity=0.040 Sum_probs=43.6
Q ss_pred cCChHHHHHHHHhC-CC---CCC-HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchH
Q 048578 380 ARLLDEAYEVIRNM-PM---EPN-AVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDD 454 (519)
Q Consensus 380 ~~~~~~A~~~~~~~-~~---~p~-~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 454 (519)
.|++++|+..|++. .. .|+ ...+..+...+.. .|++++|...++++++.+|+++.++..++.+|.+.|++++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRT---LGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHH
Confidence 34555555555554 33 132 2344445555555 5666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHh
Q 048578 455 AGKMRRLMKE 464 (519)
Q Consensus 455 A~~~~~~m~~ 464 (519)
|...+++..+
T Consensus 80 A~~~~~~al~ 89 (117)
T 3k9i_A 80 GVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666655544
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=7.5e-05 Score=74.41 Aligned_cols=171 Identities=10% Similarity=-0.027 Sum_probs=130.2
Q ss_pred HHHHHHHHhhcCCC---ChhhHHHHHHHHHHcCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC--
Q 048578 281 IEEALRVFKIVLEK---NVCTWNSIIGGLAIHGC----------GEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAG-- 345 (519)
Q Consensus 281 ~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~----------~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g-- 345 (519)
.++|++.++++..- +..+|+.--..+...|+ ++++++.++++.+.. +-+..+|..-..++.+.|
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 45667777776542 34556665555656666 889999999988754 445668887777888888
Q ss_pred cHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcC-ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHcccc---------
Q 048578 346 LIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRAR-LLDEAYEVIRNM-PMEP-NAVLWGSLLTACASAD--------- 413 (519)
Q Consensus 346 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~--------- 413 (519)
+++++.+.++++.+. -+.+...|+....++.+.| .++++++.++++ ...| |...|+.....+....
T Consensus 124 ~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 779999999999883 4567788888888888888 899999999888 6666 5556666655544310
Q ss_pred --CCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchH
Q 048578 414 --DGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDD 454 (519)
Q Consensus 414 --~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 454 (519)
..+.++++.+.+++++..+|.+..+|..+..++.+.|+.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 01568999999999999999999999999999999988655
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.16 E-value=1.7e-05 Score=77.53 Aligned_cols=117 Identities=9% Similarity=-0.007 Sum_probs=71.1
Q ss_pred HHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH
Q 048578 272 TDMYAKCGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIE 348 (519)
Q Consensus 272 ~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 348 (519)
...+.+.|++++|++.|++..+ .+..+|..+..++.+.|++++|+..+++..+.. +.+...+..+..+|...|+++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 3345666777777777776643 245667777777777777777777777776642 234556677777777777777
Q ss_pred HHHHHHHHcHHhcCCCCChhHHHHHHHH--HHhcCChHHHHHHHH
Q 048578 349 KGKEIFYNMRRDYKVEPNVKHYGCLVDL--LCRARLLDEAYEVIR 391 (519)
Q Consensus 349 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~ 391 (519)
+|.+.|++..+. .+.+...+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 777777777663 12233344444444 666677777777766
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.09 E-value=2.4e-06 Score=65.70 Aligned_cols=92 Identities=12% Similarity=-0.035 Sum_probs=52.3
Q ss_pred cCcHHHHHHHHHHcHHhcC--CCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHH
Q 048578 344 AGLIEKGKEIFYNMRRDYK--VEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVE 419 (519)
Q Consensus 344 ~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~ 419 (519)
.|++++|+..|++..+. + .+.+...+..+..+|...|++++|++.|++. ...| +...+..+..++.. .|+++
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~---~g~~~ 78 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYN---LGRYE 78 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---HTCHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH---cCCHH
Confidence 45556666666666541 1 1223455666666666666666666666665 3334 34455556666666 66777
Q ss_pred HHHHHHHHHHhhCCCCCchH
Q 048578 420 LAEIAMERLIKLEPFNDGNY 439 (519)
Q Consensus 420 ~a~~~~~~~~~~~p~~~~~~ 439 (519)
+|...++++++..|.++...
T Consensus 79 ~A~~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 79 QGVELLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHH
Confidence 77777777777766655443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.05 E-value=1.1e-05 Score=75.08 Aligned_cols=153 Identities=10% Similarity=0.016 Sum_probs=83.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 048578 265 DKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHA 344 (519)
Q Consensus 265 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 344 (519)
...+..+...+.+.|++++|...|++....+.... .+...|+..++...+ . ...|..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l---~-------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAV---K-------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHH---H-------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHH---H-------HHHHHHHHHHHHHc
Confidence 45577788889999999999999998754322211 112223333333222 1 13778888899999
Q ss_pred CcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHccccCCCCHHHHH
Q 048578 345 GLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPNAV-LWGSLLTACASADDGANVELAE 422 (519)
Q Consensus 345 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~~~~~~~~~a~ 422 (519)
|++++|+..+++..+. .+.+...|..+..+|...|++++|...|++. .+.|+.. .+..+...... ..+..+.+.
T Consensus 244 g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~--~~~~~~~a~ 319 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ--EKALYQKQK 319 (338)
T ss_dssp TCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--HHHHHHHHH
Confidence 9999999999999873 3456788999999999999999999999998 6777554 33333333222 156778888
Q ss_pred HHHHHHHhhCCCCC
Q 048578 423 IAMERLIKLEPFND 436 (519)
Q Consensus 423 ~~~~~~~~~~p~~~ 436 (519)
..++++++..|.++
T Consensus 320 ~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 320 EMYKGIFKGKDEGG 333 (338)
T ss_dssp --------------
T ss_pred HHHHHhhCCCCCCC
Confidence 99999998888754
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.01 E-value=3.9e-05 Score=74.60 Aligned_cols=125 Identities=10% Similarity=0.018 Sum_probs=95.8
Q ss_pred HHhccCcHHHHHHHHHHcHHhcC--CC---C-ChhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCCH-HHHH
Q 048578 340 ACSHAGLIEKGKEIFYNMRRDYK--VE---P-NVKHYGCLVDLLCRARLLDEAYEVIRNM---------PMEPNA-VLWG 403 (519)
Q Consensus 340 ~~~~~g~~~~a~~~~~~~~~~~~--~~---~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~---------~~~p~~-~~~~ 403 (519)
.+...|++++|+.++++..+... +. | ...+++.|+.+|...|++++|..++++. +..|+. .+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35577888888888877765221 11 2 2467888999999999999998888775 233443 4788
Q ss_pred HHHHHHccccCCCCHHHHHHHHHHHHh-----hCCCCCc---hHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 404 SLLTACASADDGANVELAEIAMERLIK-----LEPFNDG---NYVLMSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 404 ~ll~~~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
.|...|.. .|++++|..+++++++ ++|+.|. +...+..++...|++++|+.+++++++.-.
T Consensus 398 nLa~~~~~---~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 398 RAGLTNWH---AGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp HHHHHHHH---TTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---CCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888999 9999999999999875 5677554 445788888899999999999999987543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.01 E-value=1.6e-05 Score=63.47 Aligned_cols=107 Identities=14% Similarity=0.050 Sum_probs=74.4
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHcHHhcCCCC-----C-----hhHHHHHHHHHHhcCChHHHHHHHHhC-CC-------
Q 048578 334 LIAVLTACSHAGLIEKGKEIFYNMRRDYKVEP-----N-----VKHYGCLVDLLCRARLLDEAYEVIRNM-PM------- 395 (519)
Q Consensus 334 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~------- 395 (519)
+......+.+.|++++|+..|++..+-..-.| + ...|..+..++.+.|++++|+..+++. .+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 34444455566666666666666655211100 1 237778888888888888888877766 44
Q ss_pred CCCHH-HH----HHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHH
Q 048578 396 EPNAV-LW----GSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMS 443 (519)
Q Consensus 396 ~p~~~-~~----~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 443 (519)
.|+.. .| .....++.. .|++++|+..|++++++.|.+...+..+.
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~---lgr~eEAl~~y~kAlel~p~d~~~~~~~~ 143 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDG---LGRGAEAMPEFKKVVEMIEERKGETPGKE 143 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHCCSCCTTHH
T ss_pred CCchHHHHHHHHHhHHHHHHH---CCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 88654 67 778888888 99999999999999999998876655443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.99 E-value=2.3e-05 Score=63.63 Aligned_cols=97 Identities=12% Similarity=-0.025 Sum_probs=49.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCC----ChhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCC-CHH
Q 048578 333 TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEP----NVKHYGCLVDLLCRARLLDEAYEVIRNM-------PMEP-NAV 400 (519)
Q Consensus 333 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~~~p-~~~ 400 (519)
++..+...+...|++++|...+++..+...-.+ ....+..+...+...|++++|.+.+++. +..+ ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 444455555555555555555555443110001 1234455555666666666666655544 1011 122
Q ss_pred HHHHHHHHHccccCCCCHHHHHHHHHHHHhhC
Q 048578 401 LWGSLLTACASADDGANVELAEIAMERLIKLE 432 (519)
Q Consensus 401 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~ 432 (519)
.+..+...+.. .|++++|.+.++++++..
T Consensus 131 ~~~~la~~~~~---~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 131 ACWSLGNAYTA---LGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHH---HTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---ccCHHHHHHHHHHHHHHH
Confidence 44455555666 667777777776666543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.96 E-value=3.5e-06 Score=63.83 Aligned_cols=93 Identities=11% Similarity=-0.041 Sum_probs=74.1
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCC------Cc
Q 048578 366 NVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFN------DG 437 (519)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~ 437 (519)
+...+..+...+...|++++|.+.|++. ...| +...+..+..++.. .|++++|...++++++.+|.+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIK---LGEYTQAIQMCQQGLRYTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHTSCSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---hcCHHHHHHHHHHHHHhCCCccHHHHHHH
Confidence 4566777888888888888888888887 4444 56677778888888 899999999999999999987 67
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHH
Q 048578 438 NYVLMSNIYAAKAQWDDAGKMRRL 461 (519)
Q Consensus 438 ~~~~l~~~~~~~g~~~~A~~~~~~ 461 (519)
++..++.++...|++++|.+.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHH
Confidence 778888888888888777665544
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.88 E-value=3.6e-05 Score=58.67 Aligned_cols=78 Identities=12% Similarity=0.076 Sum_probs=61.4
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 048578 385 EAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLM 462 (519)
Q Consensus 385 ~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 462 (519)
+|++.|++. ...| +...+..+...+.. .|++++|...++++++.+|.++..|..++.+|...|++++|...+++.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAE---HEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455566655 4455 45677777777888 888888888888888888888888888888888889999998888887
Q ss_pred HhC
Q 048578 463 KER 465 (519)
Q Consensus 463 ~~~ 465 (519)
.+.
T Consensus 80 l~~ 82 (115)
T 2kat_A 80 LAA 82 (115)
T ss_dssp HHH
T ss_pred HHh
Confidence 664
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.88 E-value=6.3e-05 Score=55.65 Aligned_cols=65 Identities=20% Similarity=0.155 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048578 398 NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKER 465 (519)
Q Consensus 398 ~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 465 (519)
+...+..+...+.. .|++++|...++++++.+|.++.+|..++.+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLK---HDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45677788888888 899999999999999999999999999999999999999999999988764
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.85 E-value=7.8e-05 Score=53.72 Aligned_cols=81 Identities=20% Similarity=0.217 Sum_probs=62.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 048578 367 VKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSN 444 (519)
Q Consensus 367 ~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 444 (519)
...+..+...+...|++++|...+++. ...| +...+..+...+.. .|++++|...++++++.+|.++..+..++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK---QGDYDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---HhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 456667777788888888888888776 3334 45667777777888 888888988888888888888888888888
Q ss_pred HHHhcC
Q 048578 445 IYAAKA 450 (519)
Q Consensus 445 ~~~~~g 450 (519)
++.+.|
T Consensus 86 ~~~~~g 91 (91)
T 1na3_A 86 AKQKQG 91 (91)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 877654
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.84 E-value=4.6e-05 Score=74.11 Aligned_cols=118 Identities=10% Similarity=-0.042 Sum_probs=95.1
Q ss_pred CcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----------------HHHHHHHHH
Q 048578 345 GLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPN----------------AVLWGSLLT 407 (519)
Q Consensus 345 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~----------------~~~~~~ll~ 407 (519)
+++++|...|+...+. .+-....|..+...|.+.|++++|+..|++. .+.|+ ...|..+..
T Consensus 248 ~~~~~A~~~~~~~~~~--~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKE--KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEECCCCGGGSCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHH--HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 3444555555444331 1123557888899999999999999999988 33343 478888888
Q ss_pred HHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 408 ACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 408 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
++.. .|++++|...++++++++|.++.+|..++.+|...|++++|...|++..+...
T Consensus 326 ~~~~---~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P 382 (457)
T 1kt0_A 326 CYLK---LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 382 (457)
T ss_dssp HHHH---TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHH---hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 8999 99999999999999999999999999999999999999999999999987654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00014 Score=68.33 Aligned_cols=89 Identities=6% Similarity=-0.112 Sum_probs=52.3
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHH
Q 048578 296 VCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVD 375 (519)
Q Consensus 296 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 375 (519)
..+|..+..++.+.|++++|+..+++..+.. +.+...+..+..+|...|++++|...|++..+. .+.+...+..+..
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~ 349 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 3455666666666666666666666666532 223456666666666666666666666666652 2234455555555
Q ss_pred HHHhcCChHHHH
Q 048578 376 LLCRARLLDEAY 387 (519)
Q Consensus 376 ~~~~~~~~~~A~ 387 (519)
++...++.+++.
T Consensus 350 ~~~~~~~~~~a~ 361 (370)
T 1ihg_A 350 VKQKIKAQKDKE 361 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00019 Score=51.97 Aligned_cols=72 Identities=18% Similarity=0.190 Sum_probs=60.3
Q ss_pred CCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 048578 397 PNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIV 468 (519)
Q Consensus 397 p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 468 (519)
++...+..+..++...++....++|..+++++++.+|+++.+...++..+.+.|++++|...++++.+....
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 466677777777655222334799999999999999999999999999999999999999999999886654
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.70 E-value=1.4e-05 Score=63.68 Aligned_cols=50 Identities=18% Similarity=0.230 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC-----------CchHHHHHHHHHHhCCC
Q 048578 418 VELAEIAMERLIKLEPFNDGNYVLMSNIYAAKA-----------QWDDAGKMRRLMKERNI 467 (519)
Q Consensus 418 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~m~~~~~ 467 (519)
+++|+..|+++++++|++..+|..++.+|...| ++++|.+.|++..+.+.
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 679999999999999999999999999998774 89999999998887544
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00061 Score=67.84 Aligned_cols=151 Identities=12% Similarity=0.002 Sum_probs=121.8
Q ss_pred CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCc----------HHHHHHHHHHcHHhcCCCCChhHHHHHHHHHH
Q 048578 310 GCGEEAVKMFWQMQMSGIKPD-DVTLIAVLTACSHAGL----------IEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLC 378 (519)
Q Consensus 310 g~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (519)
...++|++.++++... .|+ ...|+.--.++...|+ ++++.+.++.+.+ ..+.+..+|+.-.-++.
T Consensus 43 ~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 3446789999999874 454 4467666666666666 9999999999998 34567788998888889
Q ss_pred hcC--ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCC-CHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhc----
Q 048578 379 RAR--LLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGA-NVELAEIAMERLIKLEPFNDGNYVLMSNIYAAK---- 449 (519)
Q Consensus 379 ~~~--~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---- 449 (519)
+.+ +++++++.++++ ...| +...|+.-...... .| .++++.+.++++++.+|.|..+|...+.++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~---l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQ---AAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCC
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHH---cCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccc
Confidence 999 779999999999 5555 66678777777777 77 899999999999999999999999999998874
Q ss_pred ----------CCchHHHHHHHHHHhCCC
Q 048578 450 ----------AQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 450 ----------g~~~~A~~~~~~m~~~~~ 467 (519)
+.+++|.+.+++......
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~~P 223 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFTDP 223 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHHCS
T ss_pred cccccccccHHHHHHHHHHHHHHHhhCC
Confidence 557888888888876443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.0002 Score=53.72 Aligned_cols=67 Identities=12% Similarity=-0.048 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 398 NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 398 ~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
+...+..+...+.. .|++++|...++++++.+|.++.++..++.+|.+.|++++|.+.+++..+...
T Consensus 3 ~~~~~~~~g~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 69 (111)
T 2l6j_A 3 QFEKQKEQGNSLFK---QGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69 (111)
T ss_dssp HHHHHHHHHHHHHT---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS
T ss_pred hHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 45567777788888 99999999999999999999999999999999999999999999999987544
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00062 Score=66.15 Aligned_cols=62 Identities=11% Similarity=-0.042 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHH-----CCC-CCCH-HHHHHHHHHHhccCcHHHHHHHHHHcHH
Q 048578 298 TWNSIIGGLAIHGCGEEAVKMFWQMQM-----SGI-KPDD-VTLIAVLTACSHAGLIEKGKEIFYNMRR 359 (519)
Q Consensus 298 ~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~-~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 359 (519)
+++.|...|...|++++|+.++++..+ .|- .|+. .+...+..++...+.+++|+.+|..+.+
T Consensus 395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555432 121 1222 2445555666677777777777777665
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.45 E-value=9.4e-05 Score=58.97 Aligned_cols=89 Identities=16% Similarity=0.099 Sum_probs=49.3
Q ss_pred cHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCC----------hHHHHHHHHhC-CCCCC-HHHHHHHHHHHcccc
Q 048578 346 LIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARL----------LDEAYEVIRNM-PMEPN-AVLWGSLLTACASAD 413 (519)
Q Consensus 346 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~ 413 (519)
.+++|.+.++...+. -+.+...|..+..++...++ +++|+..|++. .+.|+ ...|..+..+|...+
T Consensus 17 ~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 17 LFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 344444444444441 22234444444444444433 23555555555 44453 345555555555410
Q ss_pred C--------CCCHHHHHHHHHHHHhhCCCCC
Q 048578 414 D--------GANVELAEIAMERLIKLEPFND 436 (519)
Q Consensus 414 ~--------~~~~~~a~~~~~~~~~~~p~~~ 436 (519)
. .|++++|.+.|+++++++|++.
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 0 2589999999999999999864
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00047 Score=49.44 Aligned_cols=65 Identities=20% Similarity=0.255 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048578 399 AVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 399 ~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
...+..+...+.. .|++++|...++++++..|.++..+..++.+|.+.|++++|.+.+++..+..
T Consensus 9 ~~~~~~la~~~~~---~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 9 AEAWYNLGNAYYK---QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH---ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4466777777888 9999999999999999999999999999999999999999999999987753
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.076 Score=52.91 Aligned_cols=308 Identities=8% Similarity=-0.037 Sum_probs=150.4
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 048578 107 AEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLL 186 (519)
Q Consensus 107 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 186 (519)
.+.|++..+..+...+...-+.|- ..|..+...+. .....++..++.+..+.+.....-...+..+.+.+++.....+
T Consensus 17 ~~~~~~~~~~~l~~~l~~~pL~~y-l~y~~l~~~l~-~~~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~ 94 (618)
T 1qsa_A 17 WDNRQMDVVEQMMPGLKDYPLYPY-LEYRQITDDLM-NQPAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAF 94 (618)
T ss_dssp HHTTCHHHHHHHSGGGTTSTTHHH-HHHHHHHHTGG-GCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHCCCHHHHHHHHHhhcCCCcHHH-HHHHHHHhCcc-cCCHHHHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHh
Confidence 345666666666555533222111 13433333321 1135567777776664555555566677778888889888887
Q ss_pred HhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHH--HHHHHHHHHcC----
Q 048578 187 FDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELG--KWVHEFVNKNC---- 260 (519)
Q Consensus 187 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a--~~~~~~~~~~~---- 260 (519)
+.. ...+...-.....+....|+..+|......+-..| ...+.....++..+.+.|..... ..=+..+...|
T Consensus 95 ~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~ 172 (618)
T 1qsa_A 95 SPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGL 172 (618)
T ss_dssp CCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHH
T ss_pred ccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 766 33344445556777788888877877777665554 22334455566655554433221 11111111111
Q ss_pred -------CCcch-hHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh---hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 048578 261 -------IILND-KLGAALTDMYAKCGYIEEALRVFKIVLEKNVC---TWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKP 329 (519)
Q Consensus 261 -------~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p 329 (519)
++++. .....++..+..-. .+....... .++.. .+...+.-+.+ .+.+.|...+....+.+ ..
T Consensus 173 a~~l~~~l~~~~~~~a~~~~al~~~p~---~~~~~~~~~-~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~ 246 (618)
T 1qsa_A 173 VTVLAGQMPADYQTIASAIISLANNPN---TVLTFARTT-GATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQ-QL 246 (618)
T ss_dssp HHHHHHTCCGGGHHHHHHHHHHHHCGG---GHHHHHHHS-CCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHhChH---hHHHHHhcc-CCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CC
Confidence 11111 11112222111111 111111111 11111 11111222222 36677888877775433 22
Q ss_pred CHH----HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC--CHHHHH
Q 048578 330 DDV----TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEP--NAVLWG 403 (519)
Q Consensus 330 ~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p--~~~~~~ 403 (519)
+.. ....+.......+...++...+...... . .+.....-.+....+.|+++.|...|+.|+-.+ .....-
T Consensus 247 ~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~Y 323 (618)
T 1qsa_A 247 NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR-S--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRY 323 (618)
T ss_dssp CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT-C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc-C--CChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHH
Confidence 222 2233333444455344555555554331 2 233333344444556788888888888883222 222222
Q ss_pred HHHHHHccccCCCCHHHHHHHHHHHHh
Q 048578 404 SLLTACASADDGANVELAEIAMERLIK 430 (519)
Q Consensus 404 ~ll~~~~~~~~~~~~~~a~~~~~~~~~ 430 (519)
=+..++.. .|+.++|..+|+++.+
T Consensus 324 W~~ra~~~---~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 324 WQADLLLE---RGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHH---TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHH---cCCHHHHHHHHHHHhc
Confidence 23345556 7788888888887764
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=97.33 E-value=0.019 Score=43.44 Aligned_cols=141 Identities=9% Similarity=0.000 Sum_probs=108.7
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHH
Q 048578 306 LAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDE 385 (519)
Q Consensus 306 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 385 (519)
+.-.|.+++..++..+... ..+..-|+.+|--....-+-+-..++++.+-+-+.+. .+|++..
T Consensus 17 ~ildG~v~qGveii~k~~~---ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis--------------~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcC---CCCccccceeeeecchhhchhHHHHHHHHHhhhcCcH--------------hhhcHHH
Confidence 3456888888999888876 3466778888877777777778888888776643332 3566666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048578 386 AYEVIRNMPMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKER 465 (519)
Q Consensus 386 A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 465 (519)
....+-.++ .+...+...+..... .|.-++-.+++..+....+.++.....++.+|.+.|+..+|.+++.+.-++
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~---~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVI---QGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHH---TTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHH---hccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 666666664 244556667778888 889999999999877777778999999999999999999999999999999
Q ss_pred CCc
Q 048578 466 NIV 468 (519)
Q Consensus 466 ~~~ 468 (519)
|++
T Consensus 155 G~k 157 (172)
T 1wy6_A 155 GEK 157 (172)
T ss_dssp TCH
T ss_pred hhH
Confidence 986
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0044 Score=48.67 Aligned_cols=62 Identities=6% Similarity=-0.167 Sum_probs=31.2
Q ss_pred ChhhHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHcHH
Q 048578 295 NVCTWNSIIGGLAI----HGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSH----AGLIEKGKEIFYNMRR 359 (519)
Q Consensus 295 ~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~ 359 (519)
++.++..+...|.. .+++++|..+|++..+.| +...+..|...|.. .++.++|...|++..+
T Consensus 56 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 56 SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 33444444444444 455555555555555443 33444445545544 5555555555555554
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00085 Score=50.79 Aligned_cols=65 Identities=18% Similarity=0.132 Sum_probs=32.0
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCC
Q 048578 366 NVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEP 433 (519)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p 433 (519)
+...+..+...|...|++++|...|++. ...| +...|..+...+.. .|++++|...++++++..|
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~ 84 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQG---QGDRAGARQAWESGLAAAQ 84 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhcc
Confidence 3444444555555555555555555444 2223 23344444445555 5555555555555555544
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0045 Score=48.64 Aligned_cols=110 Identities=12% Similarity=-0.031 Sum_probs=68.5
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHh----cCCHHHH
Q 048578 209 KNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAK----CGYIEEA 284 (519)
Q Consensus 209 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a 284 (519)
+++++|.+.|++..+.| .|+.. +...|...+..+.|...+++..+.| ++.....|..+|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 35667777777776665 23322 4455555566666777777666654 34555556666666 5677777
Q ss_pred HHHHhhcCC-CChhhHHHHHHHHHH----cCChHHHHHHHHHHHHCC
Q 048578 285 LRVFKIVLE-KNVCTWNSIIGGLAI----HGCGEEAVKMFWQMQMSG 326 (519)
Q Consensus 285 ~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g 326 (519)
..+|++..+ .++.++..|...|.. .+++++|..+|++..+.|
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 777766644 355566666666666 667777777777766655
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0091 Score=54.74 Aligned_cols=136 Identities=13% Similarity=-0.026 Sum_probs=63.9
Q ss_pred CChhhHHHHHHHHHH--cC---ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcc---C-----cHHHHHHHHHHcHH
Q 048578 294 KNVCTWNSIIGGLAI--HG---CGEEAVKMFWQMQMSGIKPDD-VTLIAVLTACSHA---G-----LIEKGKEIFYNMRR 359 (519)
Q Consensus 294 ~~~~~~~~l~~~~~~--~g---~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~---g-----~~~~a~~~~~~~~~ 359 (519)
.+..+|...+.+... .+ +..+|..+|++.++. .|+. ..+..+..++.-. + ........+.....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 355666666554332 22 346677777777763 5553 3444333333200 0 00111111111111
Q ss_pred hcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC
Q 048578 360 DYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPF 434 (519)
Q Consensus 360 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (519)
....+.+..+|..+...+...|++++|...++++ .+.|+...|..+...+.. .|+.++|.+.++++..++|.
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~---~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEM---KGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHSCS
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHhcCCC
Confidence 0112334455555555555556666666666555 334555455444444555 56666666666666666655
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0012 Score=48.52 Aligned_cols=63 Identities=8% Similarity=-0.021 Sum_probs=30.9
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHH
Q 048578 296 VCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRR 359 (519)
Q Consensus 296 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 359 (519)
...+..+...+...|++++|+..|++..+.. +.+...|..+..+|...|++++|...|++..+
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3344445555555555555555555554432 11233455555555555555555555555443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00078 Score=64.30 Aligned_cols=82 Identities=11% Similarity=0.057 Sum_probs=51.9
Q ss_pred cCChHHHHHHHHhC---------CCCCCH-HHHHHHHHHHccccCCCCHHHHHHHHHHHHh-----hCCCC---CchHHH
Q 048578 380 ARLLDEAYEVIRNM---------PMEPNA-VLWGSLLTACASADDGANVELAEIAMERLIK-----LEPFN---DGNYVL 441 (519)
Q Consensus 380 ~~~~~~A~~~~~~~---------~~~p~~-~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~-----~~p~~---~~~~~~ 441 (519)
.|++++|..++++. ...|+. .+++.+..+|.. .|++++|..+++++++ .+|++ ...++.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~---~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 387 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLY---MQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLK 387 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHh---hcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 35556666555543 112322 366667777777 7777777777777764 33443 346677
Q ss_pred HHHHHHhcCCchHHHHHHHHHHh
Q 048578 442 MSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 442 l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
|+.+|..+|++++|+.++++..+
T Consensus 388 La~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 388 LGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHH
Confidence 77788888888888887777654
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0012 Score=48.23 Aligned_cols=64 Identities=14% Similarity=0.104 Sum_probs=38.4
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHH-HHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchH
Q 048578 373 LVDLLCRARLLDEAYEVIRNM-PMEP-NAV-LWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNY 439 (519)
Q Consensus 373 l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~-~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 439 (519)
....+...|++++|.+.|++. ...| +.. .+..+...+.. .|++++|...++++++.+|.++.++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRK---LGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 344556666666666666665 3334 334 55555555666 6666666666666666666665554
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.051 Score=56.90 Aligned_cols=113 Identities=16% Similarity=0.119 Sum_probs=77.4
Q ss_pred HHhcCChHHHHHHHhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 048578 174 YCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVH 253 (519)
Q Consensus 174 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 253 (519)
....|++++|.++.+.+. +...|..+...+.+.++++.|.++|.++.+ |..+...+...++.+....+.
T Consensus 662 ~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~ 730 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLA 730 (814)
T ss_dssp HHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHH
Confidence 456799999999887764 567899999999999999999999998753 334444555577777766666
Q ss_pred HHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHH
Q 048578 254 EFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQ 321 (519)
Q Consensus 254 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 321 (519)
+.....|. ++....+|.+.|++++|+++|. +.+++++|..+-+.
T Consensus 731 ~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~------------------~~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 731 KDAETTGK------FNLAFNAYWIAGDIQGAKDLLI------------------KSQRFSEAAFLGST 774 (814)
T ss_dssp HHHHHTTC------HHHHHHHHHHHTCHHHHHHHHH------------------HTTCHHHHHHHHHH
T ss_pred HHHHHcCc------hHHHHHHHHHcCCHHHHHHHHH------------------HcCChHHHHHHHHH
Confidence 66555542 2333444666677777766544 45666666665543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.96 E-value=4.2e-05 Score=71.40 Aligned_cols=239 Identities=12% Similarity=0.057 Sum_probs=174.4
Q ss_pred CCchhHHHHHHHHHhhcCCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHH
Q 048578 60 NRTISDTQLAKLIESLVNSSQIAYAHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLK 139 (519)
Q Consensus 60 ~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 139 (519)
..+.+|+.|.++.... +++.+|+..|= ...|+..|..+|.+..+.|.+++-+..+.-.++..- ++..=+.++-
T Consensus 52 n~p~VWs~LgkAqL~~---~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ 124 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQK---GMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIF 124 (624)
T ss_dssp CCCCCSSSHHHHTTTS---SSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHH
T ss_pred CCccHHHHHHHHHHcc---CchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHH
Confidence 3577899999988887 88888876543 346888899999999999999999999887776533 3344467888
Q ss_pred HHcCccchHHHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC------------------------Cch
Q 048578 140 ACGDLRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTE------------------------KNV 195 (519)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------------------~~~ 195 (519)
+|++.++..++.+.+ ..|+..-...+.+-|...|.++.|.-+|..+.. .++
T Consensus 125 ayAk~~rL~elEefl-----~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ 199 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI-----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANST 199 (624)
T ss_dssp HHHTSCSSSTTTSTT-----SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSS
T ss_pred HHHhhCcHHHHHHHH-----cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 999988855544433 346666667778888888999988888877752 467
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHH
Q 048578 196 VTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMY 275 (519)
Q Consensus 196 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 275 (519)
.+|-.+-.+|...+.+.-|.-+--.+.-. || ....++..|...|.+++...+++.-.... .....+|+-|.-.|
T Consensus 200 ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILY 273 (624)
T 3lvg_A 200 RTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILY 273 (624)
T ss_dssp CSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHH
Confidence 79999999999999998887765555432 21 12235666888899988888887776432 45677888888888
Q ss_pred HhcCCHHHHHHHHhhcCC-----------CChhhHHHHHHHHHHcCChHHHHH
Q 048578 276 AKCGYIEEALRVFKIVLE-----------KNVCTWNSIIGGLAIHGCGEEAVK 317 (519)
Q Consensus 276 ~~~g~~~~a~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~ 317 (519)
++- +.++..+.++.... .....|.-++-.|.+-.+++.|..
T Consensus 274 sKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 274 SKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred Hhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 775 44555555443322 145678889999998888887754
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0038 Score=59.57 Aligned_cols=92 Identities=12% Similarity=-0.050 Sum_probs=57.4
Q ss_pred cCcHHHHHHHHHHcHHhc--CCCC----ChhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCCH-HHHHHHHH
Q 048578 344 AGLIEKGKEIFYNMRRDY--KVEP----NVKHYGCLVDLLCRARLLDEAYEVIRNM---------PMEPNA-VLWGSLLT 407 (519)
Q Consensus 344 ~g~~~~a~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~---------~~~p~~-~~~~~ll~ 407 (519)
.|++++|..++++..+.. -+.| ...+++.|..+|...|++++|..++++. +..|+. .+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 456677776666655421 1111 2356677777777777777777776665 223433 36777777
Q ss_pred HHccccCCCCHHHHHHHHHHHHh-----hCCCCCch
Q 048578 408 ACASADDGANVELAEIAMERLIK-----LEPFNDGN 438 (519)
Q Consensus 408 ~~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~ 438 (519)
.|.. .|++++|..+++++++ ++|++|.+
T Consensus 391 ~~~~---qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 391 LYMG---LENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHH---TTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHh---ccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 7777 7888888888887765 45665443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0054 Score=48.25 Aligned_cols=86 Identities=14% Similarity=0.009 Sum_probs=52.2
Q ss_pred CcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHhC-CCC-C--CHHHHHHHHHHHccccCCCC
Q 048578 345 GLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRAR---LLDEAYEVIRNM-PME-P--NAVLWGSLLTACASADDGAN 417 (519)
Q Consensus 345 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~-~~~-p--~~~~~~~ll~~~~~~~~~~~ 417 (519)
+....+.+.|.+..+. + +++..+...+.-++++.+ +.++++.+|++. ... | +...+..+.-++.+ .|+
T Consensus 12 ~~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~k---l~~ 86 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR---LKE 86 (152)
T ss_dssp HHHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH---TSC
T ss_pred HHHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHH---ccC
Confidence 3455566666655551 2 356666666677777766 555777777666 222 4 22344444445666 777
Q ss_pred HHHHHHHHHHHHhhCCCC
Q 048578 418 VELAEIAMERLIKLEPFN 435 (519)
Q Consensus 418 ~~~a~~~~~~~~~~~p~~ 435 (519)
+++|.+.++.+++.+|+|
T Consensus 87 Y~~A~~y~~~lL~ieP~n 104 (152)
T 1pc2_A 87 YEKALKYVRGLLQTEPQN 104 (152)
T ss_dssp HHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhcCCCC
Confidence 777777777777777765
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0062 Score=44.27 Aligned_cols=86 Identities=9% Similarity=0.001 Sum_probs=51.3
Q ss_pred HHHHHhccCcHHHHHHHHHHcHHhcCCCCChh-HHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHcccc
Q 048578 337 VLTACSHAGLIEKGKEIFYNMRRDYKVEPNVK-HYGCLVDLLCRARLLDEAYEVIRNM-PMEPNAV-LWGSLLTACASAD 413 (519)
Q Consensus 337 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~~ 413 (519)
....+...|++++|...|+++.+. .+.+.. .+..+..+|...|++++|.+.|++. .+.|+.. .+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~---------- 73 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQA---------- 73 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHH----------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH----------
Confidence 345566777777777777777662 233455 6677777777777777777777776 3344322 221
Q ss_pred CCCCHHHHHHHHHHHHhhCCCC
Q 048578 414 DGANVELAEIAMERLIKLEPFN 435 (519)
Q Consensus 414 ~~~~~~~a~~~~~~~~~~~p~~ 435 (519)
.+.+.++...+++....+|++
T Consensus 74 -~~~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 74 -RKMVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp -HHHHHHHHHHHCCTTHHHHCC
T ss_pred -HHHHHHHHHHHHHHhccCccc
Confidence 123555666666555555543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0026 Score=60.77 Aligned_cols=116 Identities=14% Similarity=0.121 Sum_probs=78.5
Q ss_pred HHHHHhcCChHHHHHHHHhC------CCCCC----HHHHHHHHHHHccccCCCCHHHHHHHHHHHHh-----hCCCC---
Q 048578 374 VDLLCRARLLDEAYEVIRNM------PMEPN----AVLWGSLLTACASADDGANVELAEIAMERLIK-----LEPFN--- 435 (519)
Q Consensus 374 ~~~~~~~~~~~~A~~~~~~~------~~~p~----~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~-----~~p~~--- 435 (519)
+..+...|++++|.+++++. -+.|+ ..+++.+..+|.. .|++++|+.+++++++ .+|.+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~---~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~ 370 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACIN---LGLLEEALFYGTRTMEPYRIFFPGSHPVR 370 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHHHHHSCSSCHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHh---hccHHHHHHHHHHHHHhHHHHcCCCChHH
Confidence 34455677888887777655 12222 3477778888888 8888888888888774 34443
Q ss_pred CchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCCChhHHHHHHHHHHHHHH
Q 048578 436 DGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPGCSVIEINDVVHEFMVGDGRHPCSEEIYSMLEYVAISLR 510 (519)
Q Consensus 436 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (519)
...++.|+.+|..+|++++|+.++++..+--.. .-...||...++...+.+....++
T Consensus 371 a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 371 GVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 456778889999999999999988887652111 111247777777777777765554
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0075 Score=57.60 Aligned_cols=99 Identities=11% Similarity=-0.050 Sum_probs=66.0
Q ss_pred HHHHhccCcHHHHHHHHHHcHHhc--CCCC----ChhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCCH-HH
Q 048578 338 LTACSHAGLIEKGKEIFYNMRRDY--KVEP----NVKHYGCLVDLLCRARLLDEAYEVIRNM---------PMEPNA-VL 401 (519)
Q Consensus 338 ~~~~~~~g~~~~a~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~---------~~~p~~-~~ 401 (519)
+..+.+.|++++|...+++..+.. -+.| ...+++.++.+|...|++++|+.++++. +..|+. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 334556677788877777776521 1112 2456777888888888888887777665 233433 36
Q ss_pred HHHHHHHHccccCCCCHHHHHHHHHHHHh-----hCCCCCchH
Q 048578 402 WGSLLTACASADDGANVELAEIAMERLIK-----LEPFNDGNY 439 (519)
Q Consensus 402 ~~~ll~~~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~ 439 (519)
++.|...|.. .|++++|..+++++++ ++|++|.+-
T Consensus 374 l~nLa~~~~~---~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 413 (429)
T 3qwp_A 374 VMKVGKLQLH---QGMFPQAMKNLRLAFDIMRVTHGREHSLIE 413 (429)
T ss_dssp HHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred HHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 7777778888 8888888888888875 467665443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.095 Score=54.81 Aligned_cols=129 Identities=9% Similarity=-0.021 Sum_probs=71.9
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChH
Q 048578 234 VSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGE 313 (519)
Q Consensus 234 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 313 (519)
..++..+.+.|.++.|..+.+... .-.......|+++.|.++.+.+ .+...|..+...+.+.|+++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~ 698 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFK 698 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHH
Confidence 445555555666665554432110 1123345667777777776655 34567788888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 048578 314 EAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRN 392 (519)
Q Consensus 314 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 392 (519)
.|++.|.++.. |..+...+...|+.+...++-+..... | -++....+|.+.|++++|++++.+
T Consensus 699 ~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~-~------~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 699 LAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT-G------KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc-C------chHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888777642 233344444456655555444444331 1 122333445556666666666655
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0086 Score=52.58 Aligned_cols=90 Identities=14% Similarity=0.190 Sum_probs=67.1
Q ss_pred hHHHHHHHHhC-CCCCC---HHHHHHHHHHHccccC--CCCHHHHHHHHHHHHhhCCC-CCchHHHHHHHHHhc-CCchH
Q 048578 383 LDEAYEVIRNM-PMEPN---AVLWGSLLTACASADD--GANVELAEIAMERLIKLEPF-NDGNYVLMSNIYAAK-AQWDD 454 (519)
Q Consensus 383 ~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~~~~--~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~-g~~~~ 454 (519)
...|...+++. .+.|+ ...|..+...|..... .|+.++|.++|+++++++|+ +...+..+++.++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34556666665 66676 3456666666666110 38999999999999999997 499999999999884 99999
Q ss_pred HHHHHHHHHhCCCccCCc
Q 048578 455 AGKMRRLMKERNIVKNPG 472 (519)
Q Consensus 455 A~~~~~~m~~~~~~~~~~ 472 (519)
|.+++++........+|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999998877764344
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.38 E-value=0.02 Score=52.44 Aligned_cols=135 Identities=13% Similarity=0.085 Sum_probs=92.4
Q ss_pred CCCHHHHHHHHHHH--hcc---CcHHHHHHHHHHcHHhcCCCCC-hhHHHHHHHHHHh---cC-C-------hHHHHHHH
Q 048578 328 KPDDVTLIAVLTAC--SHA---GLIEKGKEIFYNMRRDYKVEPN-VKHYGCLVDLLCR---AR-L-------LDEAYEVI 390 (519)
Q Consensus 328 ~p~~~~~~~l~~~~--~~~---g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~~-~-------~~~A~~~~ 390 (519)
+.+...|...+++. ... .+..+|..+|++..+. .|+ ...|..+..+|.. .+ . ...+.+..
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 44555666666653 332 3467899999999873 454 3455444444431 11 1 11223322
Q ss_pred HhC-CCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcc
Q 048578 391 RNM-PMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVK 469 (519)
Q Consensus 391 ~~~-~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 469 (519)
..+ ....+..++..+...+.. .|++++|...+++++.++|. ...|..++.++.-.|++++|.+.+++....+..+
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~---~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALV---KGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred HhcccCCcCHHHHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 333 224467788887777777 79999999999999999974 6778899999999999999999999988766543
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.32 E-value=0.027 Score=41.46 Aligned_cols=73 Identities=10% Similarity=0.001 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-----C---C-CCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCch
Q 048578 368 KHYGCLVDLLCRARLLDEAYEVIRNM-----P---M-EPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGN 438 (519)
Q Consensus 368 ~~~~~l~~~~~~~~~~~~A~~~~~~~-----~---~-~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 438 (519)
.-+..+...+...|++..|...|+.. + . .+....+..+..++.+ .|+++.|...++++.+..|+++.+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~---~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ---QGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHH---ccCHHHHHHHHHHHHhcCCCCHHH
Confidence 33445666666677777776666654 1 1 1245577778888888 888999999999999999888666
Q ss_pred HHHHH
Q 048578 439 YVLMS 443 (519)
Q Consensus 439 ~~~l~ 443 (519)
...+.
T Consensus 83 ~~n~~ 87 (104)
T 2v5f_A 83 NGNLK 87 (104)
T ss_dssp HHHHH
T ss_pred HhhHH
Confidence 55443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.39 Score=38.77 Aligned_cols=102 Identities=10% Similarity=0.062 Sum_probs=68.8
Q ss_pred HHHhcCChHHHHHHHhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 048578 173 FYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWV 252 (519)
Q Consensus 173 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 252 (519)
...+.|+++.|.++.+.+ .+...|..|.......|+++-|.+.|....+ +..+.-.|.-.|+.+...++
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 345678999998887766 4567899999999999999999999887753 23344445556777766666
Q ss_pred HHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 048578 253 HEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIV 291 (519)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 291 (519)
-+.....|. ++.....+...|+++++.++|.+.
T Consensus 83 a~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 83 QNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 555555542 333444455667777776666543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.18 Score=40.67 Aligned_cols=128 Identities=13% Similarity=0.127 Sum_probs=82.0
Q ss_pred HHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 048578 274 MYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEI 353 (519)
Q Consensus 274 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~ 353 (519)
...+.|+++.|.++.+.+ .+...|..+.......|+++-|++.|.+... |..+.-.|...|+.+...++
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 355678888888877765 4667888888888888888888888887653 33444455566777666655
Q ss_pred HHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHH
Q 048578 354 FYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVELAEIAMERL 428 (519)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~ 428 (519)
-+....+ | -++.....+...|+++++.++|.+.+.-|.... .... .|-.+.|.++.+.+
T Consensus 83 a~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~------~A~t---~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 83 QNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA------VAKA---NGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH------HHHH---TTCHHHHHHHHHHT
T ss_pred HHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH------HHHH---cCcHHHHHHHHHHh
Confidence 4444431 2 234455667778888888888888753332211 1122 55666777666554
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.038 Score=39.64 Aligned_cols=68 Identities=10% Similarity=0.002 Sum_probs=47.8
Q ss_pred CCChhHHHHHHHHHHhcCC---hHHHHHHHHhC-CCCCC-HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC
Q 048578 364 EPNVKHYGCLVDLLCRARL---LDEAYEVIRNM-PMEPN-AVLWGSLLTACASADDGANVELAEIAMERLIKLEPF 434 (519)
Q Consensus 364 ~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (519)
+.++..+..+..++...++ .++|..++++. ...|+ ......+...+.. .|++++|+..|+++++.+|.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~---~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFI---SFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhhCCC
Confidence 4566677777777765544 67888888777 55664 4455555556777 78888888888888888877
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.86 E-value=0.057 Score=42.46 Aligned_cols=86 Identities=15% Similarity=0.066 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---cHHHHHHHHHHcHHhcCCCC--ChhHHHHHHHHHHhcCChHHH
Q 048578 312 GEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAG---LIEKGKEIFYNMRRDYKVEP--NVKHYGCLVDLLCRARLLDEA 386 (519)
Q Consensus 312 ~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A 386 (519)
...+.+.|.+....| .++..+...+..++++++ +.++++.+|+.+.+. . .| ....+..+.-+|.+.|++++|
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHH
Confidence 345666677666666 477888778888888888 677999999998884 2 24 356677788889999999999
Q ss_pred HHHHHhC-CCCCCHH
Q 048578 387 YEVIRNM-PMEPNAV 400 (519)
Q Consensus 387 ~~~~~~~-~~~p~~~ 400 (519)
.+.++.+ .++|+..
T Consensus 91 ~~y~~~lL~ieP~n~ 105 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNN 105 (152)
T ss_dssp HHHHHHHHHHCTTCH
T ss_pred HHHHHHHHhcCCCCH
Confidence 9999988 6677544
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.63 E-value=0.51 Score=35.81 Aligned_cols=141 Identities=11% Similarity=0.055 Sum_probs=90.3
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHH
Q 048578 205 HVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEA 284 (519)
Q Consensus 205 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 284 (519)
+.-.|..++..++..+.... .+..-|+.++.-....-+-+-..+.++.+-+. .|. ..+|++...
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrV 80 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSV 80 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHH
Confidence 45567778888888777654 24455666665544444544444444444332 111 223444444
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCC
Q 048578 285 LRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVE 364 (519)
Q Consensus 285 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 364 (519)
...+-.+-. +.......+..+...|+-++-.+++.++... -+|+......+..+|.+.|+..+|.+++.+..+ .|++
T Consensus 81 i~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~-kG~k 157 (172)
T 1wy6_A 81 VECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACK-KGEK 157 (172)
T ss_dssp HHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCH
T ss_pred HHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH-hhhH
Confidence 444443322 4455666778888889999988888886443 478888888889999999999999999988888 3653
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.61 E-value=0.045 Score=40.23 Aligned_cols=66 Identities=15% Similarity=-0.010 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhC-------CCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048578 398 NAVLWGSLLTACASADDGANVELAEIAMERLIKLE-------PFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 398 ~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
+...+..+...+.. .++++.|...++++++.. +..+.++..|+.+|.+.|++++|..++++..+..
T Consensus 4 sa~dc~~lG~~~~~---~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 4 TAEDCFELGKVAYT---EADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHH---ccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 44556677778888 999999999999998753 3346688999999999999999999999987643
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.51 E-value=0.025 Score=43.82 Aligned_cols=101 Identities=11% Similarity=0.076 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHhccCcH------HHHHHHHHHcHHhcCCCCChh-HHHHHHHH------HHhcCChHHHHHHHHhC-CC
Q 048578 330 DDVTLIAVLTACSHAGLI------EKGKEIFYNMRRDYKVEPNVK-HYGCLVDL------LCRARLLDEAYEVIRNM-PM 395 (519)
Q Consensus 330 ~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~------~~~~~~~~~A~~~~~~~-~~ 395 (519)
|..+|-..+....+.|+. ++..++|++... .++|+.. .|...|.. +...++.++|.++|+.+ .+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 444666666666666666 666677776666 4555421 11111111 12335566666666555 10
Q ss_pred -CCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCC
Q 048578 396 -EPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFN 435 (519)
Q Consensus 396 -~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (519)
+--...|......-.+ .|+...|.+++.+++...|.+
T Consensus 90 hKkFAKiwi~~AqFEiR---qgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 90 CKKFAFVHISFAQFELS---QGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp CTTBHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTTCBC
T ss_pred hHHHHHHHHHHHHHHHH---cccHHHHHHHHHHHhccCCCc
Confidence 0114444444444445 566666666666666655553
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.45 E-value=0.2 Score=38.55 Aligned_cols=68 Identities=7% Similarity=-0.078 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC-CCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048578 397 PNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPF-NDGNYVLMSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 397 p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
|+..+--.+..++.+++...+..+++.+++.+.+.+|. .......|+-++.+.|++++|+++.+.+.+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 44444333444444433344445555555555555443 233444555555555555555555555544
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.32 E-value=0.07 Score=40.29 Aligned_cols=85 Identities=16% Similarity=0.034 Sum_probs=36.8
Q ss_pred cHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHH---HHHHHHhC-CCC-C-CH-HHHHHHHHHHccccCCCCH
Q 048578 346 LIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDE---AYEVIRNM-PME-P-NA-VLWGSLLTACASADDGANV 418 (519)
Q Consensus 346 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---A~~~~~~~-~~~-p-~~-~~~~~ll~~~~~~~~~~~~ 418 (519)
.+..+.+.|.+.... +. ++..+-..+.-++.+..+..+ ++.+++.. ... | .. ...-.+.-++.+ .|++
T Consensus 16 ~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yk---lg~Y 90 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR---LKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH---TTCH
T ss_pred HHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH---hhhH
Confidence 334444444443331 22 444444444445555544443 44455444 212 2 11 122223333444 5555
Q ss_pred HHHHHHHHHHHhhCCCC
Q 048578 419 ELAEIAMERLIKLEPFN 435 (519)
Q Consensus 419 ~~a~~~~~~~~~~~p~~ 435 (519)
+.|.+.++.+++..|.|
T Consensus 91 ~~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 91 EKALKYVRGLLQTEPQN 107 (126)
T ss_dssp HHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 55555555555555554
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=94.59 E-value=0.15 Score=38.70 Aligned_cols=69 Identities=7% Similarity=-0.077 Sum_probs=44.0
Q ss_pred CCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC-CCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048578 396 EPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPF-NDGNYVLMSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 396 ~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
.|+..+--.+..++.+++...+..+++.+++.+.+.+|. ....+..|+-++.+.|++++|.++.+.+.+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 355555444555555544455666777777777776663 345666777777777777777777777655
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.47 E-value=0.3 Score=37.89 Aligned_cols=97 Identities=9% Similarity=0.090 Sum_probs=59.1
Q ss_pred CChhhHHHHHHHHHHcCCh------HHHHHHHHHHHHCCCCCCHH-HHHHHHH------HHhccCcHHHHHHHHHHcHHh
Q 048578 294 KNVCTWNSIIGGLAIHGCG------EEAVKMFWQMQMSGIKPDDV-TLIAVLT------ACSHAGLIEKGKEIFYNMRRD 360 (519)
Q Consensus 294 ~~~~~~~~l~~~~~~~g~~------~~a~~~~~~m~~~g~~p~~~-~~~~l~~------~~~~~g~~~~a~~~~~~~~~~ 360 (519)
.|..+|-..+...-+.|++ ++..++|++.... ++|+.. .+...+. .+...++.++|.++|+.+.+.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4666777777777777777 7777777776653 455431 1111110 122336777777777777663
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 048578 361 YKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM 393 (519)
Q Consensus 361 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 393 (519)
.+.-...|......-.+.|++..|.+++.+.
T Consensus 90 --hKkFAKiwi~~AqFEiRqgnl~kARkILg~A 120 (161)
T 4h7y_A 90 --CKKFAFVHISFAQFELSQGNVKKSKQLLQKA 120 (161)
T ss_dssp --CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 2222666666666667777777777777765
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.46 E-value=0.074 Score=46.73 Aligned_cols=83 Identities=11% Similarity=0.075 Sum_probs=52.0
Q ss_pred HHHHHHHHHHcHHhcCCCCC---hhHHHHHHHHHHhc-----CChHHHHHHHHhC-CCCCC--HHHHHHHHHHHccccCC
Q 048578 347 IEKGKEIFYNMRRDYKVEPN---VKHYGCLVDLLCRA-----RLLDEAYEVIRNM-PMEPN--AVLWGSLLTACASADDG 415 (519)
Q Consensus 347 ~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----~~~~~A~~~~~~~-~~~p~--~~~~~~ll~~~~~~~~~ 415 (519)
...|...+++..+ +.|+ -..|..+...|... |+.++|.+.|++. .+.|+ ..++......++. ..
T Consensus 179 l~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~--~~ 253 (301)
T 3u64_A 179 VHAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCI--PL 253 (301)
T ss_dssp HHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTT--TT
T ss_pred HHHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH--hc
Confidence 4455555555554 3444 34666777777773 7777777777777 55563 4455555555554 03
Q ss_pred CCHHHHHHHHHHHHhhCCC
Q 048578 416 ANVELAEIAMERLIKLEPF 434 (519)
Q Consensus 416 ~~~~~a~~~~~~~~~~~p~ 434 (519)
|+.+.+.+.+++++...|.
T Consensus 254 gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 254 NNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp TCHHHHHHHHHHHHHCCGG
T ss_pred CCHHHHHHHHHHHHcCCCC
Confidence 7788888888888777665
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=93.53 E-value=0.061 Score=50.76 Aligned_cols=179 Identities=13% Similarity=0.129 Sum_probs=103.5
Q ss_pred CCcccHHHHHHhccCchHHHHHHHHHHHh-cCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCCCCCcchHHHHHHHH
Q 048578 28 TKSHHHLPLLQKCTHLVQFKQVHAQIIKA-SFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIINPSTFAFNTVIRGY 106 (519)
Q Consensus 28 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~ 106 (519)
-|+..|..++.++.+.+..+.+...+... .-..++.+-+.|+-.|++. +++.+-++.+ ..||..--..+..-|
T Consensus 81 ~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~---~rL~elEefl---~~~N~A~iq~VGDrc 154 (624)
T 3lvg_A 81 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKT---NRLAELEEFI---NGPNNAHIQQVGDRC 154 (624)
T ss_dssp SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTS---CSSSTTTSTT---SCCSSSCTHHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhh---CcHHHHHHHH---cCCCcccHHHHHHHH
Confidence 37778889999987666665555443321 2245677788999999999 7766544322 347777777788888
Q ss_pred HhcCChhHHHHHHHHHHhCC--------------------CCCCcchHHHHHHHHcCccc---hHHH-HHHHHHhCCCCC
Q 048578 107 AEAGLGHRGIQLYTQMIGNG--------------------LDPDSFTYPILLKACGDLRQ---VKGV-HSLVVKSKDFNS 162 (519)
Q Consensus 107 ~~~g~~~~a~~~~~~m~~~g--------------------~~p~~~~~~~ll~~~~~~~~---~~~~-~~~~~~~~~~~~ 162 (519)
...|.++.|.-+|..+.... ---++.||..+-.+|...+. ++.. +..+....
T Consensus 155 f~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhad---- 230 (624)
T 3lvg_A 155 YDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHAD---- 230 (624)
T ss_dssp HHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSS----
T ss_pred HHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccHH----
Confidence 88888887776665543221 01344566666666655554 1111 11111111
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCCC---CchhHHHHHHHHHHHcCChhHHHHHHHH
Q 048578 163 VIHSLTRLITFYCNFGDVKSAQLLFDQMTE---KNVVTWTAMINGHVKQKNYREGIDLFRK 220 (519)
Q Consensus 163 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~ 220 (519)
-...++..|-..|.+++-+.+++.-.. .....|+.|.-.|++- ++++..+.++.
T Consensus 231 ---eL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~PeKlmEHlkl 287 (624)
T 3lvg_A 231 ---ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLEL 287 (624)
T ss_dssp ---CCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTT
T ss_pred ---HHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHHHHHHHH
Confidence 112234445666777766666665543 4455666666666654 35555444443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.34 E-value=0.53 Score=35.51 Aligned_cols=90 Identities=12% Similarity=0.021 Sum_probs=55.1
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHH---HHHHHHHcHHhcCCCC--ChhHHHHHHHHHHhcC
Q 048578 307 AIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEK---GKEIFYNMRRDYKVEP--NVKHYGCLVDLLCRAR 381 (519)
Q Consensus 307 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~ 381 (519)
........+.+.|.+....| .|+..+-..+..++.++.+... ++.+++.+.+. -.| .......|.-++.+.|
T Consensus 12 ~~~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~--~~p~~~Rd~lY~LAvg~yklg 88 (126)
T 1nzn_A 12 VSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--GSKEEQRDYVFYLAVGNYRLK 88 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--SCHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHhh
Confidence 33344555566666555544 3666666666667777765554 77777777662 223 3344555667777888
Q ss_pred ChHHHHHHHHhC-CCCCCH
Q 048578 382 LLDEAYEVIRNM-PMEPNA 399 (519)
Q Consensus 382 ~~~~A~~~~~~~-~~~p~~ 399 (519)
++++|.+.++.+ .+.|+.
T Consensus 89 ~Y~~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 89 EYEKALKYVRGLLQTEPQN 107 (126)
T ss_dssp CHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHHHHhCCCC
Confidence 888888777776 555543
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=93.04 E-value=4.9 Score=36.21 Aligned_cols=130 Identities=18% Similarity=0.099 Sum_probs=74.8
Q ss_pred HHHHHHHHHhhcCCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHH----HHHHHhCCCCCCcchHHHHHHH
Q 048578 65 DTQLAKLIESLVNSSQIAYAHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQL----YTQMIGNGLDPDSFTYPILLKA 140 (519)
Q Consensus 65 ~~~ll~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~----~~~m~~~g~~p~~~~~~~ll~~ 140 (519)
+-++..-|.+. +++++|++++... ...+.+.|+...|-++ ++-+.+.++++|.....-++..
T Consensus 38 ~RTi~~Ry~~~---k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L 103 (336)
T 3lpz_A 38 TRLVAARYSKQ---GNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGC 103 (336)
T ss_dssp HHHHHHHHHHT---TCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhh---cCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 33444445555 8888888876543 3455667777655544 3555666888888777777777
Q ss_pred HcCccc--------hHHHHHHHHHhCCC-CCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCchhHHHHHHHHHHHc
Q 048578 141 CGDLRQ--------VKGVHSLVVKSKDF-NSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQ 208 (519)
Q Consensus 141 ~~~~~~--------~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 208 (519)
+..... +.++..+-.+.++. .-++.....+...|.+.+++.+|+..|-.-..+++..+..++.-+...
T Consensus 104 ~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~ 180 (336)
T 3lpz_A 104 LRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQ 180 (336)
T ss_dssp HTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHT
T ss_pred HHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHh
Confidence 765554 33333333443321 224556666777777777777777776422223334554444444333
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.01 E-value=1.1 Score=45.57 Aligned_cols=53 Identities=13% Similarity=-0.021 Sum_probs=49.1
Q ss_pred HHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 048578 408 ACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMK 463 (519)
Q Consensus 408 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (519)
.|.. .|+++.|.++.+++...-|.+-.+|..|+.+|...|+|+.|+-.+.-+.
T Consensus 346 FLl~---K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 346 FLLN---RGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHH---TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHhc---cCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3556 7899999999999999999999999999999999999999999998884
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=92.97 E-value=4.8 Score=35.96 Aligned_cols=130 Identities=13% Similarity=0.057 Sum_probs=80.4
Q ss_pred HHHHHHHHHhhcCCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHH----HHHHHHhCCCCCCcchHHHHHHH
Q 048578 65 DTQLAKLIESLVNSSQIAYAHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQ----LYTQMIGNGLDPDSFTYPILLKA 140 (519)
Q Consensus 65 ~~~ll~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~----~~~~m~~~g~~p~~~~~~~ll~~ 140 (519)
+-++..-|.+. +++++|++++... ...+.+.|+...|-+ +++...+.+++++......++..
T Consensus 36 ~Rtl~~Ry~~~---~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l 101 (312)
T 2wpv_A 36 LRTIANRYVRS---KSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRL 101 (312)
T ss_dssp HHHHHHHHHHT---TCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHh---cCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 33444445554 7888888776653 445566777765555 45566667888888887777777
Q ss_pred HcCccc--------hHHHHHHHHHhCC-CCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCchhHHHHHHHHHHHc
Q 048578 141 CGDLRQ--------VKGVHSLVVKSKD-FNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQ 208 (519)
Q Consensus 141 ~~~~~~--------~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 208 (519)
+..... +.++..+-.+.++ ..-++..+..+...|.+.|++.+|+..|-.-...|...+..++.-+...
T Consensus 102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHh
Confidence 665432 4444444444443 1235677778888888888888888877633222455555555444443
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=92.26 E-value=6 Score=35.34 Aligned_cols=170 Identities=17% Similarity=0.107 Sum_probs=103.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCCCchhHHHHHHHHHHHcCChhHHHH----HHHHHHhCCCCCCHHHHHHHHHH
Q 048578 164 IHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGID----LFRKMRDSGVEVNELTLVSVLSA 239 (519)
Q Consensus 164 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~----~~~~m~~~~~~~~~~~~~~ll~~ 239 (519)
...|.++..-|.+.+++++|.+++.. -...+.+.|+...|-+ +++-..+.+++++......++..
T Consensus 33 hQ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l 101 (312)
T 2wpv_A 33 HQTLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRL 101 (312)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 44566777778888888888876543 2334566777666555 45556667888888888888877
Q ss_pred HhccCChH-HHHHHHHHHH----HcC--CCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHc---
Q 048578 240 CANLGASE-LGKWVHEFVN----KNC--IILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIH--- 309 (519)
Q Consensus 240 ~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~--- 309 (519)
+.....-+ .-.++.+.+. +.| ..-++.....+...|.+.|++.+|+..|-.....+...+..++.-+...
T Consensus 102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~ 181 (312)
T 2wpv_A 102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDD 181 (312)
T ss_dssp HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCC
Confidence 75533211 1233334443 332 2246778888999999999999999887633323455555555444443
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHH
Q 048578 310 GCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRR 359 (519)
Q Consensus 310 g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 359 (519)
|...++--++- ..++ -|...|+...|..+|+...+
T Consensus 182 ~~~~e~dlf~~--------------RaVL-~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 182 IEDSTVAEFFS--------------RLVF-NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CCHHHHHHHHH--------------HHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred CCcchHHHHHH--------------HHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 33333221111 1122 34566888888888887765
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=92.12 E-value=13 Score=38.83 Aligned_cols=39 Identities=8% Similarity=0.057 Sum_probs=29.7
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 048578 83 YAHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIG 124 (519)
Q Consensus 83 ~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 124 (519)
-+.++|.++. ..-|-.++.++.+.++.+.+.++|.++..
T Consensus 220 ~l~~Iy~k~~---~~dy~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 220 KSFDFLMNMP---NCDYLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp HHHHHHHHSS---SCCHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHhCC---chhHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3556666653 23577788888899999999999999875
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=92.12 E-value=0.32 Score=45.63 Aligned_cols=69 Identities=16% Similarity=0.121 Sum_probs=57.7
Q ss_pred HHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH-----hCCCccCCcc
Q 048578 402 WGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMK-----ERNIVKNPGC 473 (519)
Q Consensus 402 ~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~~~ 473 (519)
...++..+.. .|+++++...++.+...+|-+...+..++.+|.+.|+..+|++.|++.. +.|+.|.+.+
T Consensus 174 ~~~~~~~~l~---~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIA---CGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHH---TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHH---CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3445566777 8899999999999999999999999999999999999999999998875 4588776554
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=91.44 E-value=2.7 Score=29.71 Aligned_cols=88 Identities=15% Similarity=0.080 Sum_probs=63.8
Q ss_pred CChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 048578 244 GASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQ 323 (519)
Q Consensus 244 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 323 (519)
...++|..|-+.+...+. ...+--+-+..+...|+|++|..+.+...-||...|.++-. .+.|..+++...+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 356677777777766653 22222233556788999999999999999899999987765 57888899998888888
Q ss_pred HCCCCCCHHHHHH
Q 048578 324 MSGIKPDDVTLIA 336 (519)
Q Consensus 324 ~~g~~p~~~~~~~ 336 (519)
.+| .|....|..
T Consensus 96 ~sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 96 GSS-DPALADFAA 107 (115)
T ss_dssp TCS-SHHHHHHHH
T ss_pred hCC-CHHHHHHHH
Confidence 776 665555543
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=91.21 E-value=2.9 Score=29.62 Aligned_cols=88 Identities=13% Similarity=0.103 Sum_probs=63.5
Q ss_pred CChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 048578 244 GASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQ 323 (519)
Q Consensus 244 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 323 (519)
...++|..|-+.+...+. ...+--+-+..+...|+|++|..+.+...-||...|.++-. .+.|..+++...+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 356677777777766653 22222233556778899999999999999999999987766 57788888888888888
Q ss_pred HCCCCCCHHHHHH
Q 048578 324 MSGIKPDDVTLIA 336 (519)
Q Consensus 324 ~~g~~p~~~~~~~ 336 (519)
.+| .|....|..
T Consensus 97 ~sg-~p~~q~Fa~ 108 (116)
T 2p58_C 97 RSQ-DPRIQTFVN 108 (116)
T ss_dssp TCC-CHHHHHHHH
T ss_pred hCC-CHHHHHHHH
Confidence 776 665555543
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=91.19 E-value=1 Score=32.04 Aligned_cols=63 Identities=14% Similarity=0.110 Sum_probs=51.3
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHH
Q 048578 311 CGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVD 375 (519)
Q Consensus 311 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 375 (519)
+.-+..+-++.+....+.|+.....+.+++|.+.+++..|.++|+.++.+.+.. ..+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHH
Confidence 455677778888888899999999999999999999999999999998865443 456766664
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=90.80 E-value=9.8 Score=41.34 Aligned_cols=163 Identities=9% Similarity=0.026 Sum_probs=91.6
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHH
Q 048578 169 RLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASEL 248 (519)
Q Consensus 169 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 248 (519)
.++..+...+..+.+..+...... +...--.+..+|...|++++|.++|++.-. |+..+.... .....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~----------~~~~~ 884 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQF----------AVLRE 884 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSC----------SSHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhh----------hhhcc
Confidence 345556666777666665555443 333334556677778888888887766421 221111000 00000
Q ss_pred HHHHHHHHHHcC--CCcchhHHHHHHHHHHhcCCHHHHHHHHhhcC----CCCh----hhHHHHHHHHHHcCChHHHHHH
Q 048578 249 GKWVHEFVNKNC--IILNDKLGAALTDMYAKCGYIEEALRVFKIVL----EKNV----CTWNSIIGGLAIHGCGEEAVKM 318 (519)
Q Consensus 249 a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~----~~~~~l~~~~~~~g~~~~a~~~ 318 (519)
+..+.... ...-...|..++..+.+.|.++.+.++-.... ..+. ..|..++.++...|++++|...
T Consensus 885 ----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~a 960 (1139)
T 4fhn_B 885 ----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVA 960 (1139)
T ss_dssp ----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHH
T ss_pred ----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHH
Confidence 00011110 01123456667777777777777776654432 2222 2578888999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCcHHH
Q 048578 319 FWQMQMSGIKPDDVTLIAVLTACSHAGLIEK 349 (519)
Q Consensus 319 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 349 (519)
+-.+..... -...+..|+...|..|..+.
T Consensus 961 L~~~pd~~~--r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 961 LMVLSTTPL--KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHSSS--CHHHHHHHHHHHHHHCCHHH
T ss_pred HHhCCCHHH--HHHHHHHHHHHHHhCCChhh
Confidence 888776433 34567777777776665443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.40 E-value=9.4 Score=36.33 Aligned_cols=185 Identities=11% Similarity=0.098 Sum_probs=119.0
Q ss_pred cCChhHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHH----HHHhc
Q 048578 208 QKNYREGIDLFRKMRDS-----GVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTD----MYAKC 278 (519)
Q Consensus 208 ~~~~~~a~~~~~~m~~~-----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~ 278 (519)
.|+++.|++.+-.+.+. ...........++..|...++++.....+..+.+..-... .....++. .....
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk-~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK-LSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH-HHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHhcC
Confidence 37788998887666542 3445567788899999999999999887776655322221 12223333 22223
Q ss_pred CC--HHHHHHHHhhcCC--CC--------hhhHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHH
Q 048578 279 GY--IEEALRVFKIVLE--KN--------VCTWNSIIGGLAIHGCGEEAVKMFWQMQMS--GIKPD---DVTLIAVLTAC 341 (519)
Q Consensus 279 g~--~~~a~~~~~~~~~--~~--------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--g~~p~---~~~~~~l~~~~ 341 (519)
.. .+.-..+.+.... .+ ......|...+...|++.+|..++.++... |.... ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 32 2223333333322 11 123456788899999999999999998632 32222 13677778889
Q ss_pred hccCcHHHHHHHHHHcHHh-cCC--CCC--hhHHHHHHHHHHhcCChHHHHHHHHhC
Q 048578 342 SHAGLIEKGKEIFYNMRRD-YKV--EPN--VKHYGCLVDLLCRARLLDEAYEVIRNM 393 (519)
Q Consensus 342 ~~~g~~~~a~~~~~~~~~~-~~~--~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~ 393 (519)
...+++.+|..++.++... ... +|+ ...+...+..+...+++.+|...|.+.
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 9999999999999987531 112 222 245667788888899999998887664
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.12 E-value=2.4 Score=33.64 Aligned_cols=111 Identities=8% Similarity=-0.026 Sum_probs=57.1
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC-----CCh-------hhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHH-HHH
Q 048578 270 ALTDMYAKCGYIEEALRVFKIVLE-----KNV-------CTWNSIIGGLAIHGCGEEAVKMFWQMQMSG-IKPDDV-TLI 335 (519)
Q Consensus 270 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~-~~~ 335 (519)
.-+..+...|.++.|+-+.+.+.. ++. .++..+..++...|++..|...|++..... .-+... +..
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 345666677777777776665421 221 144555666777777777777777753211 111111 110
Q ss_pred HHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 048578 336 AVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMP 394 (519)
Q Consensus 336 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 394 (519)
.+. . ... -........+.+.-..+..+|.+.+++++|+.+++.++
T Consensus 105 ~~~-~---~ss----------~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 105 STG-N---SAS----------TPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp --------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred ccc-c---cCC----------CcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 000 0 000 00001122344444557788888899999998888873
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=88.75 E-value=13 Score=33.45 Aligned_cols=170 Identities=12% Similarity=0.061 Sum_probs=101.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCCCchhHHHHHHHHHHHcCChhHHHHH----HHHHHhCCCCCCHHHHHHHHHH
Q 048578 164 IHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDL----FRKMRDSGVEVNELTLVSVLSA 239 (519)
Q Consensus 164 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~~~~~~~~~~~~ll~~ 239 (519)
-..|.++..-|.+.+++++|.+++.. -...+.+.|+...|-++ ++-..+.++++|......++..
T Consensus 35 HQ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L 103 (336)
T 3lpz_A 35 AQETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGC 103 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 34566777778888888888887543 23345666776555444 3555666788888888888877
Q ss_pred HhccCChH-HHHHHHHHHHH----cC--CCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCh
Q 048578 240 CANLGASE-LGKWVHEFVNK----NC--IILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCG 312 (519)
Q Consensus 240 ~~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 312 (519)
+.....-+ .-..+.+.+.+ .| ..-++.....+...|.+.+++.+|+..|-.-..+.+..+..++.-+...+..
T Consensus 104 ~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~ 183 (336)
T 3lpz_A 104 LRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDES 183 (336)
T ss_dssp HTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCG
T ss_pred HHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCC
Confidence 76555322 12333333332 23 3346777888899999999999999888532222335665555544444332
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHH
Q 048578 313 EEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRR 359 (519)
Q Consensus 313 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 359 (519)
.++- ...-..++ -|...++...|...++...+
T Consensus 184 ~e~d--------------lfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 184 HTAP--------------LYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp GGHH--------------HHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred ccHH--------------HHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 2221 11222222 35556788888777666554
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.61 E-value=1.4 Score=34.91 Aligned_cols=124 Identities=15% Similarity=0.050 Sum_probs=66.9
Q ss_pred CCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCCh-------hHHHHHHHHHHhcCChHHHHHHHHhC--
Q 048578 325 SGIKPDDV--TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNV-------KHYGCLVDLLCRARLLDEAYEVIRNM-- 393 (519)
Q Consensus 325 ~g~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~-- 393 (519)
.|+.|... ++..-++.+...|.++.|+-+.+.+..-.+.+|+. .++..+.+++...|++.+|...|++.
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 34555443 44455667778888888888777765532333432 24556778888888888888888775
Q ss_pred --CCCCCHH-HHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 048578 394 --PMEPNAV-LWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMK 463 (519)
Q Consensus 394 --~~~p~~~-~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (519)
..-+... +...+ . . ....... .. .+.+.+.-..++.+|.+.|++++|+.+++.+.
T Consensus 92 ~~k~l~k~~s~~~~~-~---~---~ss~p~s-------~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 92 QKKALSKTSKVRPST-G---N---SASTPQS-------QC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHCC----------------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHhcCCCccccc-c---c---cCCCccc-------cc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 1111111 11001 0 0 0000000 00 12234567789999999999999999987653
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.52 E-value=2.4 Score=43.12 Aligned_cols=53 Identities=15% Similarity=-0.046 Sum_probs=40.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHcH
Q 048578 304 GGLAIHGCGEEAVKMFWQMQMSGIKPDD-VTLIAVLTACSHAGLIEKGKEIFYNMR 358 (519)
Q Consensus 304 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~ 358 (519)
..+...|+++-|+++-++... ..|+. .+|..|..+|...|+++.|+-.+..+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 345567888888888888776 35654 488888888888888888888877763
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=87.79 E-value=1.6 Score=40.77 Aligned_cols=64 Identities=13% Similarity=0.059 Sum_probs=37.7
Q ss_pred HHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--------CCCCCHHH
Q 048578 336 AVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM--------PMEPNAVL 401 (519)
Q Consensus 336 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--------~~~p~~~~ 401 (519)
.++.++...|+++++...+..+... .+-+...|..+|.+|.+.|+..+|++.|+.. |+.|...+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~--~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3445555666666666666666552 2334556666666666666666666666544 55565543
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=87.52 E-value=2.4 Score=32.03 Aligned_cols=74 Identities=15% Similarity=0.175 Sum_probs=56.7
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 048578 311 CGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVI 390 (519)
Q Consensus 311 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 390 (519)
|.-+..+-++.+....+.|+.......+++|.+.+|+..|..+|+-++.+.+ +...+|..+++ +-..++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq---------ElkPtl 136 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ---------ELRPTL 136 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH---------HHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH---------HHhhHH
Confidence 4456777777887888999999999999999999999999999999988544 34556776664 444555
Q ss_pred HhCCC
Q 048578 391 RNMPM 395 (519)
Q Consensus 391 ~~~~~ 395 (519)
+++|+
T Consensus 137 ~ELGI 141 (152)
T 2y69_E 137 NELGI 141 (152)
T ss_dssp HHHTC
T ss_pred HHhCC
Confidence 55543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=87.44 E-value=4.1 Score=44.28 Aligned_cols=124 Identities=6% Similarity=-0.128 Sum_probs=86.8
Q ss_pred HHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCC----------------
Q 048578 336 AVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM--PMEP---------------- 397 (519)
Q Consensus 336 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~p---------------- 397 (519)
.++..+...+..+.+.++..... .+...--.+..+|...|++++|.+.|++. ++..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~------~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN------SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC------CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc------CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 45556666677766666544332 23333346778888999999999999887 2211
Q ss_pred -------CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCc-----hHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048578 398 -------NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDG-----NYVLMSNIYAAKAQWDDAGKMRRLMKER 465 (519)
Q Consensus 398 -------~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 465 (519)
-..-|..++..+.. .+.++.+.++.+.+++..+.+.. .|..+...+...|++++|...+-.+.+.
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~---~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~ 967 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFE---ESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT 967 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHH---TSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS
T ss_pred cccccccHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH
Confidence 11235667777888 88999999999988876643222 6778889999999999999988777655
Q ss_pred CCc
Q 048578 466 NIV 468 (519)
Q Consensus 466 ~~~ 468 (519)
..+
T Consensus 968 ~~r 970 (1139)
T 4fhn_B 968 PLK 970 (1139)
T ss_dssp SSC
T ss_pred HHH
Confidence 443
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=87.37 E-value=8.7 Score=33.25 Aligned_cols=123 Identities=14% Similarity=0.058 Sum_probs=76.7
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCCh----hHHHHHHHHHHh
Q 048578 304 GGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNV----KHYGCLVDLLCR 379 (519)
Q Consensus 304 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~ 379 (519)
....+.|++++++.....-++.. +-|...-..+++.+|-.|++++|.+-++...+- .|+. ..|..+|++
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~a--- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKA--- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHH---
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHH---
Confidence 34567788888888888877764 556677778888889999999999888887662 3442 234444433
Q ss_pred cCChHHHHH-HHHhC----CCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCch
Q 048578 380 ARLLDEAYE-VIRNM----PMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGN 438 (519)
Q Consensus 380 ~~~~~~A~~-~~~~~----~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 438 (519)
+...+ +|.-- -+.....-...++.+..... .|+.++|..+-.++.+.-|..+..
T Consensus 78 ----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~-~G~~~~A~~lr~~A~e~ap~~~G~ 136 (273)
T 1zbp_A 78 ----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMV-SQDYEQVSELALQIEELRQEKGFL 136 (273)
T ss_dssp ----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred ----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhh-cCCHHHHHHHHHHHHhcCcccCCC
Confidence 22222 22211 11112334444555533211 688999999999988888775543
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=87.04 E-value=4.3 Score=28.97 Aligned_cols=47 Identities=15% Similarity=0.109 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 048578 213 EGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKN 259 (519)
Q Consensus 213 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 259 (519)
+..+-++.+....+.|++....+.+++|.+.+++..|.++++.+...
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34555556666666777777777777777777777777777766654
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=85.54 E-value=38 Score=35.42 Aligned_cols=251 Identities=11% Similarity=-0.047 Sum_probs=131.1
Q ss_pred HHHHhcCChHHHHHHHhcCCC----Cchh--HHHHHHHHHHHcCChhHHHHHHHHHHhCCC--CCC---H-HH-HH--HH
Q 048578 172 TFYCNFGDVKSAQLLFDQMTE----KNVV--TWTAMINGHVKQKNYREGIDLFRKMRDSGV--EVN---E-LT-LV--SV 236 (519)
Q Consensus 172 ~~~~~~g~~~~A~~~~~~~~~----~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~---~-~~-~~--~l 236 (519)
-+....|+.++++.++..... .+.. .-..+.-+....|..+++..++.......- .-+ . .. -. .+
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 345667888888888877654 1222 223344455566666677777766554310 001 1 11 11 12
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCcchh--HHHHHHHHHHhcCCHHHHHHHHhhcCCC-Chhh--HHHHHHHHHHcCC
Q 048578 237 LSACANLGASELGKWVHEFVNKNCIILNDK--LGAALTDMYAKCGYIEEALRVFKIVLEK-NVCT--WNSIIGGLAIHGC 311 (519)
Q Consensus 237 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~--~~~l~~~~~~~g~ 311 (519)
.-++...++. .+...+..+..... .... .--+|...+...|+-+-...++..+.+. +... ...+.-++...|+
T Consensus 462 Gla~~GS~~e-ev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 462 GLAAMGSANI-EVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHHSTTCCCH-HHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC
T ss_pred HHHhcCCCCH-HHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC
Confidence 2223333443 34444444443321 1111 2223444556677777777777655332 2222 3333444557788
Q ss_pred hHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 048578 312 GEEAVKMFWQMQMSGIKPDDV--TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEV 389 (519)
Q Consensus 312 ~~~a~~~~~~m~~~g~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 389 (519)
.+.+..+++.+.... .|-.. ....+.-+|+..|+.....+++..+.. ....++.....+.-++...|+.+.+.++
T Consensus 540 ~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~--d~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 540 QELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS--DSNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred hHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc--CCcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 888888888887631 22222 222445578899998888889888887 2333444444444455556776666777
Q ss_pred HHhC--CCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHH
Q 048578 390 IRNM--PMEPNAVLWGSLLTACASADDGANVELAEIAMERLI 429 (519)
Q Consensus 390 ~~~~--~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~ 429 (519)
++.+ ...|...--..+.-+....+ .++ ..+...+..+.
T Consensus 617 v~~L~~~~d~~VR~gAalALGli~aG-n~~-~~aid~L~~L~ 656 (963)
T 4ady_A 617 VQLLSKSHNAHVRCGTAFALGIACAG-KGL-QSAIDVLDPLT 656 (963)
T ss_dssp TTTGGGCSCHHHHHHHHHHHHHHTSS-SCC-HHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhccC-CCc-HHHHHHHHHHc
Confidence 6655 22344333333333333311 232 56666666664
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.28 E-value=26 Score=33.26 Aligned_cols=198 Identities=9% Similarity=0.016 Sum_probs=119.5
Q ss_pred cCChHHHHHHHhcCCC-----C----chhHHHHHHHHHHHcCChhHHHHHHHHHHhC-CCCCCHHHHHHHHHHH----hc
Q 048578 177 FGDVKSAQLLFDQMTE-----K----NVVTWTAMINGHVKQKNYREGIDLFRKMRDS-GVEVNELTLVSVLSAC----AN 242 (519)
Q Consensus 177 ~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~----~~ 242 (519)
.|+++.|.+.+-.+.+ . .......++..|...|+++...+.+.-+.+. |..+ .....++..+ ..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk--~ai~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK--LSIQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH--HHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhc
Confidence 3678888887755542 1 2345777889999999999998888776544 3322 2233344332 23
Q ss_pred cCChHHHHH--HHHHHHH--cC-CCc---chhHHHHHHHHHHhcCCHHHHHHHHhhcCC----C-C----hhhHHHHHHH
Q 048578 243 LGASELGKW--VHEFVNK--NC-IIL---NDKLGAALTDMYAKCGYIEEALRVFKIVLE----K-N----VCTWNSIIGG 305 (519)
Q Consensus 243 ~~~~~~a~~--~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~-~----~~~~~~l~~~ 305 (519)
....+.... +.+.... .| +-. .......|...|...|++.+|.+++..+.. . + +..+...+..
T Consensus 107 ~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 107 SKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp HCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 333332211 1111110 11 111 234456788999999999999999988742 1 1 3467777889
Q ss_pred HHHcCChHHHHHHHHHHHH----CCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHh
Q 048578 306 LAIHGCGEEAVKMFWQMQM----SGIKPDD--VTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCR 379 (519)
Q Consensus 306 ~~~~g~~~~a~~~~~~m~~----~g~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (519)
|...+++..|..++.++.. ....|+. ..+...+..+...+++.+|... |..+...+..
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~----------------y~e~~~~~~~ 250 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQY----------------LQEIYQTDAI 250 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHH----------------HHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHH----------------HHHHHhcccc
Confidence 9999999999999998742 2223332 2445555556666666555443 4455666666
Q ss_pred cCChHHHHHHHHh
Q 048578 380 ARLLDEAYEVIRN 392 (519)
Q Consensus 380 ~~~~~~A~~~~~~ 392 (519)
.++.......+..
T Consensus 251 ~~d~~~~~~~L~~ 263 (445)
T 4b4t_P 251 KSDEAKWKPVLSH 263 (445)
T ss_dssp HSCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH
Confidence 7776655554443
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=85.19 E-value=7.9 Score=27.43 Aligned_cols=60 Identities=10% Similarity=-0.018 Sum_probs=47.0
Q ss_pred HHHHhcCChHHHHHHHhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 048578 172 TFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLV 234 (519)
Q Consensus 172 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 234 (519)
..+...|++++|..+.+....||...|-+|.. .+.|.-+++..-+.++...| .|....|.
T Consensus 47 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 44778899999999999998899999987765 57888888888887887766 45544443
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=84.92 E-value=8.4 Score=27.34 Aligned_cols=60 Identities=17% Similarity=0.127 Sum_probs=46.6
Q ss_pred HHHHhcCChHHHHHHHhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 048578 172 TFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLV 234 (519)
Q Consensus 172 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 234 (519)
..+...|++++|..+.+...-||...|-+|.. .+.|.-+++..-+.++...| .|....|.
T Consensus 48 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 48 SSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC-CHHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 44778899999999999999999999987765 57788888888887777665 45544443
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=82.97 E-value=2.6 Score=36.51 Aligned_cols=50 Identities=10% Similarity=0.057 Sum_probs=26.6
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048578 415 GANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
.|+++.++..+...++.+|.|......|...++-.|+|+.|.+-++...+
T Consensus 10 ~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 10 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp TTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 45555555555555555555555555555555555555555554444443
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=82.02 E-value=32 Score=31.87 Aligned_cols=286 Identities=8% Similarity=0.030 Sum_probs=147.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCC--------CchhHHHHHHHHHHHcCC-hhHHHHHHHHHHhCCCCCCHHHH--
Q 048578 165 HSLTRLITFYCNFGDVKSAQLLFDQMTE--------KNVVTWTAMINGHVKQKN-YREGIDLFRKMRDSGVEVNELTL-- 233 (519)
Q Consensus 165 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~-- 233 (519)
.....|...|.+.|+.++...++..... .....-..++..+....+ .+.-.++..+..+.. .-+..+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 4566788889999999999999888765 123345667777766433 333333333332210 0011122
Q ss_pred ----HHHHHHHhccCChHHHHHHHHHHHHcCCC-----cchhHHHHHHHHHHhcCCHHHHHHHHhhcCC------CChhh
Q 048578 234 ----VSVLSACANLGASELGKWVHEFVNKNCII-----LNDKLGAALTDMYAKCGYIEEALRVFKIVLE------KNVCT 298 (519)
Q Consensus 234 ----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~~~~ 298 (519)
..++..|...|++.+|..++..+.+.--. .-..++..-+..|...+++.++...+..... +++..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 24667778888888888777777663211 1233455566677777888777777755421 22222
Q ss_pred HHH----HHHHHH-HcCChHHHHHHHHHHHH----CCCCCCH---HHHHHHHHHHhccCcHHHHHHHH-HHcHHhcCCCC
Q 048578 299 WNS----IIGGLA-IHGCGEEAVKMFWQMQM----SGIKPDD---VTLIAVLTACSHAGLIEKGKEIF-YNMRRDYKVEP 365 (519)
Q Consensus 299 ~~~----l~~~~~-~~g~~~~a~~~~~~m~~----~g~~p~~---~~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~ 365 (519)
... -.-.+. ..++|..|...|-+..+ .| .|.. ..|..+. +...... .+...++ ......+ ..|
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~-~~~~~~~lkYlvL~-aLl~~~r-~el~~~l~~~~~~~~-~~p 254 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVD-SVKALTSLKYMLLC-KIMLGQS-DDVNQLVSGKLAITY-SGR 254 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHH-HHHTTCG-GGHHHHHHSHHHHTT-CSH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccc-cHHHHHHHHHHHHH-HHHcCCH-HHHHHHhcccccccc-CCc
Confidence 111 122344 56778877777766532 11 1111 1222222 2222221 1111222 1211212 235
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHH
Q 048578 366 NVKHYGCLVDLLCRARLLDEAYEVIRNM--PMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMS 443 (519)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 443 (519)
....+..++.+| ..+++.+...+++.. .+..|......+ ..+.+ .--...+.++ ..|-....+..++
T Consensus 255 ei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~-~~L~~-------~Ir~~~L~~i--~~pYsrIsl~~iA 323 (394)
T 3txn_A 255 DIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHL-GTLYD-------TMLEQNLCRI--IEPYSRVQVAHVA 323 (394)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHH-HHHHH-------HHHHHHHHHH--HTTCSEEEHHHHH
T ss_pred cHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHH-HHHHH-------HHHHHHHHHH--hHhhceeeHHHHH
Confidence 554455555543 455666666666665 233344321111 11111 0001111111 2355667777777
Q ss_pred HHHHhcCCchHHHHHHHHHHhCCCc
Q 048578 444 NIYAAKAQWDDAGKMRRLMKERNIV 468 (519)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~m~~~~~~ 468 (519)
..+.- ..++++..+-+|...|.-
T Consensus 324 ~~l~l--s~~evE~~L~~lI~dg~I 346 (394)
T 3txn_A 324 ESIQL--PMPQVEKKLSQMILDKKF 346 (394)
T ss_dssp HHHTC--CHHHHHHHHHHHHHTTSS
T ss_pred HHHCc--CHHHHHHHHHHHHHCCCe
Confidence 77654 678999999999877753
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=81.16 E-value=16 Score=27.71 Aligned_cols=73 Identities=8% Similarity=-0.072 Sum_probs=42.7
Q ss_pred CCCCHHHHHHHHHHHhccCc---HHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH
Q 048578 327 IKPDDVTLIAVLTACSHAGL---IEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPNAV 400 (519)
Q Consensus 327 ~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~ 400 (519)
-.|+..|--.+..++.++.+ ..+++.+++.+.+. +-.-....+..|.-++.+.|++++|.+..+.+ .+.|+..
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 35666655555555555543 44677777777663 21112445556666777777777777777666 5566543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 519 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.001 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.001 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.9 bits (89), Expect = 0.001
Identities = 36/287 (12%), Positives = 78/287 (27%), Gaps = 8/287 (2%)
Query: 178 GDVKSAQLLFDQMTEK---NVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLV 234
GD ++A+ Q+ + N + + H + +
Sbjct: 13 GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYS 71
Query: 235 SVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEK 294
++ + G + + + D + A +
Sbjct: 72 NLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN 131
Query: 295 NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIF 354
G + G ++ +P+ + L +A +
Sbjct: 132 PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNA--QGEIWLAI 189
Query: 355 YNMRRDYKVEPN-VKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASAD 413
++ + ++PN + Y L ++L AR+ D A AC +
Sbjct: 190 HHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE 249
Query: 414 DGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRR 460
G ++LA R I+L+P Y ++N K +A
Sbjct: 250 QG-LIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYN 295
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.5 bits (88), Expect = 0.001
Identities = 26/189 (13%), Positives = 63/189 (33%), Gaps = 9/189 (4%)
Query: 271 LTDMYAKCGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGI 327
L ++ G I A+ F+ + + + ++ L + AV + +
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234
Query: 328 KPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPN-VKHYGCLVDLLCRARLLDEA 386
+ GLI+ + + RR +++P+ Y L + L + EA
Sbjct: 235 NHAV-VHGNLACVYYEQGLIDLAIDTY---RRAIELQPHFPDAYCNLANALKEKGSVAEA 290
Query: 387 YEVIRNMPMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIY 446
+ A + G N+E A + +++ P + ++++
Sbjct: 291 EDCYNTALRLCPTHADSLNNLANIKREQG-NIEEAVRLYRKALEVFPEFAAAHSNLASVL 349
Query: 447 AAKAQWDDA 455
+ + +A
Sbjct: 350 QQQGKLQEA 358
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 519 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.62 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.61 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.26 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.19 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.16 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.14 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.14 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.13 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.1 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.1 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.07 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.92 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.71 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.68 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.66 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.62 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.62 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.62 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.61 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.6 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.58 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.45 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.44 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.43 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.42 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.31 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.31 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.25 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.21 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.15 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.14 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.13 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.07 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.06 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.03 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.01 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.99 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.95 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.91 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.89 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.8 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.73 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.65 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.61 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.6 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.57 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.51 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.49 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.41 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.29 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.29 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.23 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.02 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.89 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.93 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.79 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.25 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.0 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 91.04 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 90.92 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 85.1 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 82.44 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.7e-20 Score=177.76 Aligned_cols=352 Identities=12% Similarity=0.010 Sum_probs=185.6
Q ss_pred HHHHHHhhcCCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCc
Q 048578 68 LAKLIESLVNSSQIAYAHLVFNQIIN---PSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDL 144 (519)
Q Consensus 68 ll~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 144 (519)
+...+.+. |++++|.+.|+++.+ .+..++..+...|.+.|++++|+..|++..+.. |+
T Consensus 5 la~~~~~~---G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~-------------- 65 (388)
T d1w3ba_ 5 LAHREYQA---GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PL-------------- 65 (388)
T ss_dssp HHHHHHHH---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT--------------
T ss_pred HHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC--------------
Confidence 34455666 889999988888732 346678888888888899999999888887631 22
Q ss_pred cchHHHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CchhHHHHHHHHHHHcCChhHHHHHHHHH
Q 048578 145 RQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTE---KNVVTWTAMINGHVKQKNYREGIDLFRKM 221 (519)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m 221 (519)
+..++..+..+|.+.|++++|...+..... .+...+..........+....+.......
T Consensus 66 ------------------~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (388)
T d1w3ba_ 66 ------------------LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSA 127 (388)
T ss_dssp ------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHH
T ss_pred ------------------CHHHHHHHHHHhhhhccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 233444455555555555555555555433 22223333333333444444444433333
Q ss_pred HhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhh
Q 048578 222 RDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLE---KNVCT 298 (519)
Q Consensus 222 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~ 298 (519)
.... .................+....+...+....... +.+...+..+...+...|++++|...+++..+ .+..+
T Consensus 128 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 205 (388)
T d1w3ba_ 128 LQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDA 205 (388)
T ss_dssp HHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred cccc-cccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHH
Confidence 3322 1222223333333444444444444444444432 33344445555555555555555555554422 23344
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHH
Q 048578 299 WNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLC 378 (519)
Q Consensus 299 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (519)
|..+...+...|++++|...+++....+ ..+...+..+..++.+.|++++|...|++..+ ..+.+..++..+...+.
T Consensus 206 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~ 282 (388)
T d1w3ba_ 206 YINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALK 282 (388)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHH
T ss_pred HHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 5555555555555555555555554432 23344455555555555555555555555554 12233445555555555
Q ss_pred hcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHH
Q 048578 379 RARLLDEAYEVIRNM--PMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAG 456 (519)
Q Consensus 379 ~~~~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 456 (519)
..|++++|.+.++.. ..+.+...+..+...+.. .|++++|...++++++..|+++.++..++.+|.+.|++++|.
T Consensus 283 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 359 (388)
T d1w3ba_ 283 EKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE---QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL 359 (388)
T ss_dssp HHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT---TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHH
T ss_pred HcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHH---CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 555555555555554 212234444455555555 555555555555555555555555555555555555555555
Q ss_pred HHHHHHHh
Q 048578 457 KMRRLMKE 464 (519)
Q Consensus 457 ~~~~~m~~ 464 (519)
+.|++..+
T Consensus 360 ~~~~~al~ 367 (388)
T d1w3ba_ 360 MHYKEAIR 367 (388)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 55555543
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=4.1e-20 Score=175.05 Aligned_cols=366 Identities=12% Similarity=0.055 Sum_probs=264.1
Q ss_pred ccCchHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChhHHH
Q 048578 40 CTHLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIIN---PSTFAFNTVIRGYAEAGLGHRGI 116 (519)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~ 116 (519)
.++...+.+.++.+.+.. |-++.++..+...|.+. |++++|...|+.+.+ .+..+|..+...|.+.|++++|+
T Consensus 12 ~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~---~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~ 87 (388)
T d1w3ba_ 12 AGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQC---RRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAI 87 (388)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccccc
Confidence 367777888888887764 45677888889999999 999999999998743 45678999999999999999999
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcC---CCC
Q 048578 117 QLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQM---TEK 193 (519)
Q Consensus 117 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~ 193 (519)
..+....+.... +........... ...+....+....... ...
T Consensus 88 ~~~~~~~~~~~~-~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~ 133 (388)
T d1w3ba_ 88 EHYRHALRLKPD-FIDGYINLAAAL---------------------------------VAAGDMEGAVQAYVSALQYNPD 133 (388)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHH---------------------------------HHHSCSSHHHHHHHHHHHHCTT
T ss_pred cccccccccccc-cccccccccccc---------------------------------cccccccccccccccccccccc
Confidence 999999884321 111111111111 1111111111111111 112
Q ss_pred chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHH
Q 048578 194 NVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTD 273 (519)
Q Consensus 194 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 273 (519)
...............+....+...+....... +-+...+..+...+...|+++.|...++...+.. +.+...+..+..
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 211 (388)
T d1w3ba_ 134 LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGN 211 (388)
T ss_dssp CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhh
Confidence 23333444444555556666666655555432 2234455555666666677777777766666654 345556666777
Q ss_pred HHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH
Q 048578 274 MYAKCGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKG 350 (519)
Q Consensus 274 ~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a 350 (519)
++...|++++|...+++... .+...+..+...+.+.|++++|+..|++..+.. +-+..++..+..++...|++++|
T Consensus 212 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A 290 (388)
T d1w3ba_ 212 VLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEA 290 (388)
T ss_dssp HHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHH
T ss_pred hhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 77777777777777766533 355667778888888999999999999988753 33456888899999999999999
Q ss_pred HHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHccccCCCCHHHHHHHHHHH
Q 048578 351 KEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPN-AVLWGSLLTACASADDGANVELAEIAMERL 428 (519)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~ 428 (519)
...++.... ..+.+...+..+...+...|++++|++.|++. .+.|+ ..++..+...+.. .|++++|...++++
T Consensus 291 ~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~a 365 (388)
T d1w3ba_ 291 EDCYNTALR--LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ---QGKLQEALMHYKEA 365 (388)
T ss_dssp HHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHT---TTCCHHHHHHHHHH
T ss_pred HHHHHhhhc--cCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHH
Confidence 999999887 45667788889999999999999999999987 66774 5678888888999 99999999999999
Q ss_pred HhhCCCCCchHHHHHHHHHhcCC
Q 048578 429 IKLEPFNDGNYVLMSNIYAAKAQ 451 (519)
Q Consensus 429 ~~~~p~~~~~~~~l~~~~~~~g~ 451 (519)
++++|+++.+|..++.+|.+.||
T Consensus 366 l~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 366 IRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHhCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999998885
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=4.5e-14 Score=129.63 Aligned_cols=241 Identities=14% Similarity=0.006 Sum_probs=172.9
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcC
Q 048578 200 AMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCG 279 (519)
Q Consensus 200 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 279 (519)
.....+.+.|++++|+..|++..+.. +-+..+|..+..++...|+++.|...+.+..+.. |.+...+..+..+|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 45667788888999998888888764 2246677788888888888888888888887765 445667777777777778
Q ss_pred CHHHHHHHHhhcCCCChhh---HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 048578 280 YIEEALRVFKIVLEKNVCT---WNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYN 356 (519)
Q Consensus 280 ~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 356 (519)
++++|.+.++.....++.. +....... ...+.......+..+...+.+.+|...|.+
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAHLVTPAEEGA--------------------GGAGLGPSKRILGSLLSDSLFLEVKELFLA 161 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhccchHHHHHhhhhhh--------------------hhcccccchhhHHHHHHhhHHHHHHHHHHH
Confidence 8877777777653321110 00000000 000001111122233445667778888887
Q ss_pred cHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC
Q 048578 357 MRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPF 434 (519)
Q Consensus 357 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (519)
..+.....++...+..+...+...|++++|+..+++. ...| +...|..+...+.. .|++++|.+.++++++.+|+
T Consensus 162 al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~p~ 238 (323)
T d1fcha_ 162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN---GNQSEEAVAAYRRALELQPG 238 (323)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccc---cccchhHHHHHHHHHHHhhc
Confidence 7764334456677888889999999999999999887 4455 46678888888888 99999999999999999999
Q ss_pred CCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048578 435 NDGNYVLMSNIYAAKAQWDDAGKMRRLMKER 465 (519)
Q Consensus 435 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 465 (519)
++.++..++.+|.+.|++++|.+.|++..+.
T Consensus 239 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 239 YIRSRYNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998764
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=6.4e-14 Score=128.59 Aligned_cols=266 Identities=13% Similarity=0.058 Sum_probs=196.1
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCC--C-chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 048578 169 RLITFYCNFGDVKSAQLLFDQMTE--K-NVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGA 245 (519)
Q Consensus 169 ~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 245 (519)
.....+.+.|++++|...|+++.+ | +..+|..+..++...|++++|...|++..+.. +-+...+..+...+...|+
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccc
Confidence 456678899999999999999865 3 46789999999999999999999999998764 2356788888899999999
Q ss_pred hHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 048578 246 SELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMS 325 (519)
Q Consensus 246 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 325 (519)
++.|...++.+...... ............ ...+.......+..+...+.+.+|...+.+..+.
T Consensus 103 ~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~ 165 (323)
T d1fcha_ 103 QRQACEILRDWLRYTPA-YAHLVTPAEEGA----------------GGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL 165 (323)
T ss_dssp HHHHHHHHHHHHHTSTT-TGGGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhHHHhccc-hHHHHHhhhhhh----------------hhcccccchhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99999999998875421 111110000000 0001111111223344556678888888887653
Q ss_pred C-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHH
Q 048578 326 G-IKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLW 402 (519)
Q Consensus 326 g-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~ 402 (519)
. -.++...+..+...+...|++++|+..|++.... .+-+...|..+..+|...|++++|.+.|++. .+.| +..++
T Consensus 166 ~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 243 (323)
T d1fcha_ 166 DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSR 243 (323)
T ss_dssp STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhcccccccchhhHHHHHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHH
Confidence 2 2345678888889999999999999999998873 3446778899999999999999999999987 5566 45678
Q ss_pred HHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCc-----------hHHHHHHHHHhcCCchHHHH
Q 048578 403 GSLLTACASADDGANVELAEIAMERLIKLEPFNDG-----------NYVLMSNIYAAKAQWDDAGK 457 (519)
Q Consensus 403 ~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-----------~~~~l~~~~~~~g~~~~A~~ 457 (519)
..+..+|.. .|++++|...|++++++.|.+.. .|..+..++...|+.+.+..
T Consensus 244 ~~lg~~~~~---~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 244 YNLGISCIN---LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 306 (323)
T ss_dssp HHHHHHHHH---HTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHH---CCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 888889999 99999999999999998887554 34556667777777765544
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.26 E-value=2.1e-09 Score=98.88 Aligned_cols=259 Identities=11% Similarity=-0.039 Sum_probs=149.4
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHcC----C-CcchhHHHHHHH
Q 048578 203 NGHVKQKNYREGIDLFRKMRDSGVEVN----ELTLVSVLSACANLGASELGKWVHEFVNKNC----I-ILNDKLGAALTD 273 (519)
Q Consensus 203 ~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~ 273 (519)
..+...|++++|++++++..+.....+ ...+..+..++...|+++.|...++...+.. . ......+..+..
T Consensus 20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (366)
T d1hz4a_ 20 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 99 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 344455555555555555544321111 1233344445555555555555555544321 0 111223344455
Q ss_pred HHHhcCCHHHHHHHHhhcCC-------C----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCCHHHHHHHH
Q 048578 274 MYAKCGYIEEALRVFKIVLE-------K----NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMS----GIKPDDVTLIAVL 338 (519)
Q Consensus 274 ~~~~~g~~~~a~~~~~~~~~-------~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----g~~p~~~~~~~l~ 338 (519)
.+...|++..+...+..... + ....+..+...+...|+++.+...+...... +......++....
T Consensus 100 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (366)
T d1hz4a_ 100 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 179 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 56666666666665554321 1 1123445556677777888887777776542 2222334555666
Q ss_pred HHHhccCcHHHHHHHHHHcHHhcCCCC-----ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-----CHHHHHHHHH
Q 048578 339 TACSHAGLIEKGKEIFYNMRRDYKVEP-----NVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-----NAVLWGSLLT 407 (519)
Q Consensus 339 ~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-----~~~~~~~ll~ 407 (519)
..+...++...+...+........-.. ....+..+...+...|++++|...+++. ...| ....+..+..
T Consensus 180 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~ 259 (366)
T d1hz4a_ 180 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 259 (366)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 667777777777777766554211111 1234555666777888888888888776 2222 2335555666
Q ss_pred HHccccCCCCHHHHHHHHHHHHhh------CCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048578 408 ACASADDGANVELAEIAMERLIKL------EPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 408 ~~~~~~~~~~~~~a~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
.+.. .|++++|...+++++.. .|....++..++.+|.+.|++++|.+.+++..+
T Consensus 260 ~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 260 AQIL---LGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHH---cCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777 88888888888887643 244456778888888888888888888887654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=7e-10 Score=100.28 Aligned_cols=212 Identities=11% Similarity=0.051 Sum_probs=121.3
Q ss_pred ccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcC-CHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHH
Q 048578 242 NLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCG-YIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAVK 317 (519)
Q Consensus 242 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~ 317 (519)
+.+.+++|..+++.+.+.+ |-+...|+....++...| ++++|+..++++.+ .+..+|..+...+.+.|++++|+.
T Consensus 55 ~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~ 133 (315)
T d2h6fa1 55 RDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELE 133 (315)
T ss_dssp HTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHH
T ss_pred hCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHH
Confidence 3333334444443333332 233333444444444433 24555555544422 245566666667777777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCC------hHHHHHHHH
Q 048578 318 MFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARL------LDEAYEVIR 391 (519)
Q Consensus 318 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~A~~~~~ 391 (519)
.++++.+.. +-+...|..+...+...|++++|+..++++.+. -+.+...|+.+..++.+.+. +++|++.+.
T Consensus 134 ~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~--~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~ 210 (315)
T d2h6fa1 134 FIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTL 210 (315)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHH
T ss_pred HHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--CCccHHHHHHHHHHHHHccccchhhhhHHhHHHHH
Confidence 777776642 334567777777777777777777777777762 23455666666666665554 467777776
Q ss_pred hC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCC--CchHHHHHHHHHhc--CCchHHHHHHHH
Q 048578 392 NM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFN--DGNYVLMSNIYAAK--AQWDDAGKMRRL 461 (519)
Q Consensus 392 ~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~--g~~~~A~~~~~~ 461 (519)
+. .+.| +...|..+...+.. ...+++.+.++.+.++.|.. +..+..++.+|... +..+.+...+++
T Consensus 211 ~al~~~P~~~~~~~~l~~ll~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~k 282 (315)
T d2h6fa1 211 EMIKLVPHNESAWNYLKGILQD----RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNK 282 (315)
T ss_dssp HHHHHSTTCHHHHHHHHHHHTT----TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHhCCCchHHHHHHHHHHHh----cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 65 4455 45566655555544 34577778888888877663 34455667776543 444444444333
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.16 E-value=6.2e-09 Score=95.64 Aligned_cols=288 Identities=9% Similarity=-0.055 Sum_probs=203.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCC--Cc------hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCC----HHHH
Q 048578 167 LTRLITFYCNFGDVKSAQLLFDQMTE--KN------VVTWTAMINGHVKQKNYREGIDLFRKMRDSGV-EVN----ELTL 233 (519)
Q Consensus 167 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~ 233 (519)
.......+...|++++|+.++++... |+ ..+++.+..+|...|++++|...|++...... .++ ...+
T Consensus 15 ~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 94 (366)
T d1hz4a_ 15 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 94 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 33445678899999999999987643 22 24677788899999999999999998765311 111 2345
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHc----CCCc---chhHHHHHHHHHHhcCCHHHHHHHHhhcCCC--------Chhh
Q 048578 234 VSVLSACANLGASELGKWVHEFVNKN----CIIL---NDKLGAALTDMYAKCGYIEEALRVFKIVLEK--------NVCT 298 (519)
Q Consensus 234 ~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~ 298 (519)
..+...+...|++..+...+...... +... ....+..+...+...|+++.+...+...... ....
T Consensus 95 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 174 (366)
T d1hz4a_ 95 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 174 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHH
Confidence 55667788899999999888876542 1111 2335566778899999999999998776321 2334
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCC--CChhHH
Q 048578 299 WNSIIGGLAIHGCGEEAVKMFWQMQMS----GIKPD--DVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVE--PNVKHY 370 (519)
Q Consensus 299 ~~~l~~~~~~~g~~~~a~~~~~~m~~~----g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~ 370 (519)
+......+...+++..+...+.+.... +..+. ...+..+...+...|+++.|...+....+..... .....+
T Consensus 175 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 254 (366)
T d1hz4a_ 175 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 254 (366)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHH
Confidence 556667788889999999888776432 11111 1245666777889999999999999886621111 123456
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-------CCCCCH-HHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC--------
Q 048578 371 GCLVDLLCRARLLDEAYEVIRNM-------PMEPNA-VLWGSLLTACASADDGANVELAEIAMERLIKLEPF-------- 434 (519)
Q Consensus 371 ~~l~~~~~~~~~~~~A~~~~~~~-------~~~p~~-~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~-------- 434 (519)
..+..++...|++++|...+++. +..|+. .++..+...+.. .|++++|.+.+++++++.+.
T Consensus 255 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~l~~Al~l~~~~~~~~~~~ 331 (366)
T d1hz4a_ 255 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQ---AGRKSDAQRVLLDALKLANRTGFISHFV 331 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHhhhcCcHHHHH
Confidence 67889999999999999998876 444433 366777777888 99999999999999886532
Q ss_pred -CCchHHHHHHHHHhcCCchHHHH
Q 048578 435 -NDGNYVLMSNIYAAKAQWDDAGK 457 (519)
Q Consensus 435 -~~~~~~~l~~~~~~~g~~~~A~~ 457 (519)
....+..++..+...++.+++.+
T Consensus 332 ~~~~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 332 IEGEAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp TTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHHHHHhcCCChHHHH
Confidence 12234455666677787777765
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.14 E-value=5e-10 Score=98.41 Aligned_cols=91 Identities=15% Similarity=-0.022 Sum_probs=43.3
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHc
Q 048578 233 LVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIH 309 (519)
Q Consensus 233 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 309 (519)
+..+..++.+.|+++.|...|++.++.. |.++.++..+..+|.+.|++++|+..|+++.+ .+..++..+...+...
T Consensus 40 ~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 118 (259)
T d1xnfa_ 40 LYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG 118 (259)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHH
Confidence 3334444555555555555555555543 33444444455555555555555555544422 1233444444444444
Q ss_pred CChHHHHHHHHHHHH
Q 048578 310 GCGEEAVKMFWQMQM 324 (519)
Q Consensus 310 g~~~~a~~~~~~m~~ 324 (519)
|++++|...|++..+
T Consensus 119 g~~~~A~~~~~~al~ 133 (259)
T d1xnfa_ 119 GRDKLAQDDLLAFYQ 133 (259)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHh
Confidence 555555555544443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=5.7e-10 Score=100.88 Aligned_cols=200 Identities=11% Similarity=0.075 Sum_probs=162.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048578 265 DKLGAALTDMYAKCGYIEEALRVFKIVLEK---NVCTWNSIIGGLAIHG-CGEEAVKMFWQMQMSGIKPDDVTLIAVLTA 340 (519)
Q Consensus 265 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 340 (519)
...++.+..++.+.+.+++|+.+++++++- +..+|+....++...| ++++|+..+++..+.. +-+..+|..+...
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence 445667777888999999999999999653 5567888888888876 5899999999998753 3456699999999
Q ss_pred HhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHcccc---CC
Q 048578 341 CSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASAD---DG 415 (519)
Q Consensus 341 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~---~~ 415 (519)
+...|++++|+..++++.+ --+.+...|..+...+...|++++|++.++++ .+.| +...|+.+...+...+ +.
T Consensus 122 ~~~l~~~~eAl~~~~kal~--~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHhhccHHHHHHHHhhhhh--hhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchh
Confidence 9999999999999999998 34567889999999999999999999999998 6666 4556766655544411 13
Q ss_pred CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 048578 416 ANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIV 468 (519)
Q Consensus 416 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 468 (519)
+.+++|...+.++++.+|.+..+|..++.++...| .+++.+.++...+....
T Consensus 200 ~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~ 251 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPS 251 (315)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTT
T ss_pred hhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCC
Confidence 34789999999999999999999999988876654 68888888888765443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.13 E-value=6.3e-09 Score=93.73 Aligned_cols=183 Identities=9% Similarity=-0.005 Sum_probs=99.4
Q ss_pred hHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---C-hhhHHHHHHHHHHcCChHHHHHHHHH
Q 048578 246 SELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEK---N-VCTWNSIIGGLAIHGCGEEAVKMFWQ 321 (519)
Q Consensus 246 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 321 (519)
.+.+..+++...+...+.+...+...+..+...|+++.|..+|+++.+. + ...|...+....+.|+++.|.++|++
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 3555566666655444444555555566666666666666666655331 1 22455666666666666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHH-HhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC----CCC
Q 048578 322 MQMSGIKPDDVTLIAVLTA-CSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM----PME 396 (519)
Q Consensus 322 m~~~g~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~ 396 (519)
+.+.+ +.+...|...... +...|+.+.|..+|+.+.+. .+.+...|..+++.+...|+.++|..+|++. +..
T Consensus 160 al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 160 AREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 65543 2222233222222 23345666666666666652 3334555666666666666666666666654 223
Q ss_pred CC--HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC
Q 048578 397 PN--AVLWGSLLTACASADDGANVELAEIAMERLIKLEPF 434 (519)
Q Consensus 397 p~--~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (519)
|+ ...|...+..-.. .|+.+.+..+++++.+.-|.
T Consensus 237 ~~~~~~iw~~~~~fE~~---~G~~~~~~~~~~r~~~~~~~ 273 (308)
T d2onda1 237 PEKSGEIWARFLAFESN---IGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp GGGCHHHHHHHHHHHHH---HSCHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHCcc
Confidence 32 3355555555445 56666666666666665554
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.10 E-value=3.3e-10 Score=103.75 Aligned_cols=268 Identities=7% Similarity=-0.101 Sum_probs=191.7
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCC--Cch-hHHHHHHHH----------HHHcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 048578 169 RLITFYCNFGDVKSAQLLFDQMTE--KNV-VTWTAMING----------HVKQKNYREGIDLFRKMRDSGVEVNELTLVS 235 (519)
Q Consensus 169 ~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~----------~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 235 (519)
.++......+..++|+.+++.+.+ |+. ..|+..-.. +...|++++|+.+++...... +-+...+..
T Consensus 34 ~~~~~~~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~ 112 (334)
T d1dcea1 34 AVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHH 112 (334)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHH
Confidence 333333444455899999998865 543 345443332 333455788999999988764 335556666
Q ss_pred HHHHHhccC--ChHHHHHHHHHHHHcCCCcchhH-HHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHHc
Q 048578 236 VLSACANLG--ASELGKWVHEFVNKNCIILNDKL-GAALTDMYAKCGYIEEALRVFKIVLEK---NVCTWNSIIGGLAIH 309 (519)
Q Consensus 236 ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~ 309 (519)
+..++...+ +++.+...++.+.... +.+... +......+...+.+++|+..++.+.+. +..+|+.+...+.+.
T Consensus 113 ~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~ 191 (334)
T d1dcea1 113 RCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 191 (334)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred hhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 666655554 5889999999998876 344444 445567888899999999999998764 567888889999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 048578 310 GCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEV 389 (519)
Q Consensus 310 g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 389 (519)
|++++|...+++..+. .|+. ..+...+...+..+++...+..... ..+++...+..++..+...|+.++|...
T Consensus 192 ~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 264 (334)
T d1dcea1 192 HPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLL--GRAEPLFRCELSVEKSTVLQSELESCKE 264 (334)
T ss_dssp SCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHH--SCCCCSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHH--hCcchhhHHHHHHHHHHHHhhHHHHHHH
Confidence 9998887666554431 2222 2233344556667778888877766 3445566667778888889999999999
Q ss_pred HHhC-CCCCC-HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHh
Q 048578 390 IRNM-PMEPN-AVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAA 448 (519)
Q Consensus 390 ~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 448 (519)
+.+. ...|+ ..++..+...+.. .|++++|.+.++++++++|.+...|..|...+..
T Consensus 265 ~~~~~~~~p~~~~~~~~l~~~~~~---~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 265 LQELEPENKWCLLTIILLMRALDP---LLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHCT---GGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHhhCchHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhH
Confidence 9887 66664 4567777778888 9999999999999999999988888888877764
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.10 E-value=1.6e-09 Score=95.03 Aligned_cols=93 Identities=5% Similarity=-0.304 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHH
Q 048578 197 TWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYA 276 (519)
Q Consensus 197 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 276 (519)
+|..+..+|.+.|++++|+..|++..+.. +-+..+|..+..++.+.|++++|...|+.+.+.. +.+...+..+..+|.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHH
Confidence 34444444455555555555554444432 1233444444444555555555555555544443 223334444444444
Q ss_pred hcCCHHHHHHHHhhc
Q 048578 277 KCGYIEEALRVFKIV 291 (519)
Q Consensus 277 ~~g~~~~a~~~~~~~ 291 (519)
..|++++|...|++.
T Consensus 117 ~~g~~~~A~~~~~~a 131 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAF 131 (259)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHH
Confidence 555555555544444
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.07 E-value=1.6e-08 Score=91.02 Aligned_cols=183 Identities=9% Similarity=0.023 Sum_probs=145.0
Q ss_pred CCHHHHHHHHhhcCC----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 048578 279 GYIEEALRVFKIVLE----KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIF 354 (519)
Q Consensus 279 g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 354 (519)
+..++|..+|++..+ .+...|...+......|+++.|..+|+++.+.........|...+..+.+.|+.+.|..+|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 345778888887643 3556788888889999999999999999987543333457889999999999999999999
Q ss_pred HHcHHhcCCCCChhHHHHHHHH-HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhh
Q 048578 355 YNMRRDYKVEPNVKHYGCLVDL-LCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKL 431 (519)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~ 431 (519)
+.+.+ ..+.+...|...+.. +...|+.+.|..+|+.+ ...| +...|...+..... .|+++.|..+|+++++.
T Consensus 158 ~~al~--~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~---~g~~~~aR~~fe~ai~~ 232 (308)
T d2onda1 158 KKARE--DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH---LNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHT--STTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TCCHHHHHHHHHHHHHS
T ss_pred HHHHH--hCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH---cCChHHHHHHHHHHHHh
Confidence 99987 333445555555444 34468999999999998 3333 56789999999888 99999999999999998
Q ss_pred CCCCCc----hHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048578 432 EPFNDG----NYVLMSNIYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 432 ~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
.|.++. .|...+..-...|+.+.+.++++++.+.-
T Consensus 233 ~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~ 271 (308)
T d2onda1 233 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred CCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 765443 78888888889999999999999987643
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.92 E-value=8.7e-10 Score=100.90 Aligned_cols=255 Identities=6% Similarity=-0.157 Sum_probs=179.9
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH-HHHHHH---HH-------HhccCChHHHHHHHHHHHHcCCCcchhH
Q 048578 199 TAMINGHVKQKNYREGIDLFRKMRDSGVEVNEL-TLVSVL---SA-------CANLGASELGKWVHEFVNKNCIILNDKL 267 (519)
Q Consensus 199 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll---~~-------~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 267 (519)
..++......+..++|+++++...+. .|+.. .|+..- .. +...|++++|..+++.+.+.. |.+...
T Consensus 33 ~~~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~ 109 (334)
T d1dcea1 33 QAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGT 109 (334)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHH
Confidence 33444344444568999999999875 45544 333222 22 223345778888888888875 556667
Q ss_pred HHHHHHHHHhcC--CHHHHHHHHhhcCCC---ChhhHHH-HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048578 268 GAALTDMYAKCG--YIEEALRVFKIVLEK---NVCTWNS-IIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTAC 341 (519)
Q Consensus 268 ~~~l~~~~~~~g--~~~~a~~~~~~~~~~---~~~~~~~-l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 341 (519)
+..+..++...+ ++++|...+.++.+. +...+.. ....+...+.+++|+..++++.+.. +-+...|..+..++
T Consensus 110 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~ 188 (334)
T d1dcea1 110 WHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLL 188 (334)
T ss_dssp HHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHH
T ss_pred HHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 777766666655 488999999887543 4455543 4466677899999999999888764 34566888888899
Q ss_pred hccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHccccCCCCHH
Q 048578 342 SHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PME-PNAVLWGSLLTACASADDGANVE 419 (519)
Q Consensus 342 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~~~~~~~~ 419 (519)
.+.|++++|...++...+. .|. ...+...+...+..+++...+... ... ++...+..+...+.. .++.+
T Consensus 189 ~~~~~~~~A~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~---~~~~~ 259 (334)
T d1dcea1 189 PQLHPQPDSGPQGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTV---LQSEL 259 (334)
T ss_dssp HHHSCCCCSSSCCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHH---HHHHH
T ss_pred HHhcCHHHHHHHHHHhHHh---HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHH---HhhHH
Confidence 9999888877666655541 121 122334456667777787777665 222 333345555556666 78899
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048578 420 LAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 420 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
+|...+.+..+.+|.+..++..++.+|.+.|++++|.+.+++..+.+
T Consensus 260 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld 306 (334)
T d1dcea1 260 ESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 306 (334)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999997754
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.71 E-value=3.5e-07 Score=75.37 Aligned_cols=141 Identities=13% Similarity=-0.080 Sum_probs=91.0
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 048578 272 TDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGK 351 (519)
Q Consensus 272 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~ 351 (519)
...+...|+++.|++.|.++..++..+|..+...+...|++++|++.|++.++.. +-+...|..+..++.+.|++++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHH
Confidence 4456777888888888888877788888888888888888888888888887743 334557778888888888888888
Q ss_pred HHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCC-HHHHHHHHHHHccccCCCCHHHHHHHHHHHHh
Q 048578 352 EIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPN-AVLWGSLLTACASADDGANVELAEIAMERLIK 430 (519)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~ 430 (519)
..|++.... .+.+... .+...|. ..+++ ..++..+..++.. .|++++|.+.++++.+
T Consensus 91 ~~~~kAl~~--~~~n~~~------~~~~~~~-----------~~~~~~~e~~~n~a~~~~~---~~~~~~A~~~l~~A~~ 148 (192)
T d1hh8a_ 91 KDLKEALIQ--LRGNQLI------DYKILGL-----------QFKLFACEVLYNIAFMYAK---KEEWKKAEEQLALATS 148 (192)
T ss_dssp HHHHHHHHT--TTTCSEE------ECGGGTB-----------CCEEEHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHh--CccCchH------HHHHhhh-----------hcccchHHHHHHHHHHHHH---CCCHHHHHHHHHHHHh
Confidence 888877651 1111100 0000000 00111 1233444455666 7777777777777777
Q ss_pred hCCCC
Q 048578 431 LEPFN 435 (519)
Q Consensus 431 ~~p~~ 435 (519)
..|..
T Consensus 149 ~~~~~ 153 (192)
T d1hh8a_ 149 MKSEP 153 (192)
T ss_dssp TCCSG
T ss_pred cCCCc
Confidence 76653
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.68 E-value=1e-07 Score=71.57 Aligned_cols=103 Identities=16% Similarity=0.026 Sum_probs=65.0
Q ss_pred HHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCC
Q 048578 338 LTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDG 415 (519)
Q Consensus 338 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~ 415 (519)
...+...|++++|+..|++..+. .+.+...|..+..+|...|++++|+..+++. .+.| +...|..+..++.. .
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~---~ 84 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF---L 84 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---T
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHH---c
Confidence 44556666777777777666652 3445556666666666667777776666666 3333 44566666666666 6
Q ss_pred CCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 048578 416 ANVELAEIAMERLIKLEPFNDGNYVLMSNI 445 (519)
Q Consensus 416 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 445 (519)
|++++|...++++++.+|.++.++..+..+
T Consensus 85 ~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l 114 (117)
T d1elwa_ 85 NRFEEAKRTYEEGLKHEANNPQLKEGLQNM 114 (117)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 677777777777777777766666655544
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.66 E-value=5.6e-08 Score=81.17 Aligned_cols=117 Identities=9% Similarity=-0.114 Sum_probs=87.5
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHH
Q 048578 329 PDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPN-AVLWGSLL 406 (519)
Q Consensus 329 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~-~~~~~~ll 406 (519)
|+...+......+.+.|++++|+..|.+..+. .+.+...|..+..+|.+.|++++|+..|++. .+.|+ ..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 67777777788888888888888888887762 3456777888888888888888888888877 66674 55777777
Q ss_pred HHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC
Q 048578 407 TACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKA 450 (519)
Q Consensus 407 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 450 (519)
.++.. .|++++|...++++++++|.+...+...+..+...+
T Consensus 80 ~~~~~---l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~~ 120 (201)
T d2c2la1 80 QCQLE---MESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 120 (201)
T ss_dssp HHHHH---TTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHH
T ss_pred HHHHH---CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 77888 888888888888888877765555555555554443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=1.9e-07 Score=74.56 Aligned_cols=118 Identities=10% Similarity=0.001 Sum_probs=96.3
Q ss_pred HHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHcccc
Q 048578 336 AVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASAD 413 (519)
Q Consensus 336 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~ 413 (519)
.....|.+.|++++|+..|++..+. .+.+...|..+..+|...|++++|.+.|++. .+.| +..+|..+..++..
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~-- 90 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA-- 90 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--
T ss_pred HHHHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHH--
Confidence 3455788999999999999999883 3556788889999999999999999999988 5566 45688888888999
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH--hcCCchHHHHH
Q 048578 414 DGANVELAEIAMERLIKLEPFNDGNYVLMSNIYA--AKAQWDDAGKM 458 (519)
Q Consensus 414 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~A~~~ 458 (519)
.|++++|...++++++++|.++.++..+..+.. ..+.+++|...
T Consensus 91 -~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 91 -LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp -TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999888887766643 44556666654
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=2.8e-07 Score=75.93 Aligned_cols=121 Identities=12% Similarity=0.060 Sum_probs=83.7
Q ss_pred HHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCC
Q 048578 340 ACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGAN 417 (519)
Q Consensus 340 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~ 417 (519)
.+...|+++.|++.|.++. +|+..+|..+..+|...|++++|++.|++. .+.| +...|..+..++.. .|+
T Consensus 14 ~~~~~~d~~~Al~~~~~i~-----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~---~g~ 85 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ---TEK 85 (192)
T ss_dssp HHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTC
T ss_pred HHHHCCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHh---hcc
Confidence 4556677777777666542 355666666777777777777777777766 4445 34466666666766 777
Q ss_pred HHHHHHHHHHHHhhCCCCC----------------chHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 048578 418 VELAEIAMERLIKLEPFND----------------GNYVLMSNIYAAKAQWDDAGKMRRLMKERNIV 468 (519)
Q Consensus 418 ~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 468 (519)
+++|...|+++++..+.+. .++..++.+|.+.|++++|.+.+++.......
T Consensus 86 ~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 86 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 7777777777766544322 35678899999999999999999988765543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.62 E-value=6.8e-08 Score=80.66 Aligned_cols=97 Identities=11% Similarity=-0.109 Sum_probs=80.3
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHH
Q 048578 294 KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCL 373 (519)
Q Consensus 294 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 373 (519)
|+...+......+.+.|++++|+..|++.++.. +-+...|..+..+|.+.|++++|+..|++..+ -.+-+..+|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--l~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH--hCCCcHHHHHHH
Confidence 455566677888999999999999999988753 44566888999999999999999999999876 223357788899
Q ss_pred HHHHHhcCChHHHHHHHHhC
Q 048578 374 VDLLCRARLLDEAYEVIRNM 393 (519)
Q Consensus 374 ~~~~~~~~~~~~A~~~~~~~ 393 (519)
..+|...|++++|+..|+++
T Consensus 79 g~~~~~l~~~~~A~~~~~~a 98 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRA 98 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999999886
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=1.5e-07 Score=70.55 Aligned_cols=92 Identities=14% Similarity=0.119 Sum_probs=83.3
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhc
Q 048578 372 CLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAK 449 (519)
Q Consensus 372 ~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 449 (519)
.-...+...|++++|+..|++. ...| +...|..+..++.. .|++++|+..++++++.+|.++.+|..++.++...
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~ 84 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAK---KGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 84 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccc---cccccccchhhhhHHHhccchhhHHHHHHHHHHHc
Confidence 3567789999999999999998 5566 56678888888999 99999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhCC
Q 048578 450 AQWDDAGKMRRLMKERN 466 (519)
Q Consensus 450 g~~~~A~~~~~~m~~~~ 466 (519)
|++++|...+++..+..
T Consensus 85 ~~~~~A~~~~~~a~~~~ 101 (117)
T d1elwa_ 85 NRFEEAKRTYEEGLKHE 101 (117)
T ss_dssp TCHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHHhC
Confidence 99999999999998744
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.60 E-value=8.1e-07 Score=78.72 Aligned_cols=166 Identities=10% Similarity=-0.007 Sum_probs=90.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhhHHHHHHHHHH-cCChHHHHHHHHHHHH----CCCCCC-H
Q 048578 267 LGAALTDMYAKCGYIEEALRVFKIVLE-----KN----VCTWNSIIGGLAI-HGCGEEAVKMFWQMQM----SGIKPD-D 331 (519)
Q Consensus 267 ~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~-~g~~~~a~~~~~~m~~----~g~~p~-~ 331 (519)
+|..+..+|.+.|++++|.+.+++..+ .+ ..++..+...+.. .|++++|++.+++..+ .+..+. .
T Consensus 79 ~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~ 158 (290)
T d1qqea_ 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhh
Confidence 344444444445555555444443321 01 2234444555533 4777777777776542 221221 2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC------H
Q 048578 332 VTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPN-----VKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPN------A 399 (519)
Q Consensus 332 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~------~ 399 (519)
.++..+...+...|++++|...|+++.......+. ...+...+..+...|+++.|...+++. .+.|+ .
T Consensus 159 ~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~ 238 (290)
T d1qqea_ 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES 238 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------H
T ss_pred hHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHH
Confidence 35677777888888888888888887662211111 122344555666778888888888887 44442 1
Q ss_pred HHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCC
Q 048578 400 VLWGSLLTACASADDGANVELAEIAMERLIKLEP 433 (519)
Q Consensus 400 ~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p 433 (519)
.....++.++.. ++.+.+++|+..|+++.+++|
T Consensus 239 ~~l~~l~~a~~~-~d~e~~~eai~~y~~~~~lD~ 271 (290)
T d1qqea_ 239 NFLKSLIDAVNE-GDSEQLSEHCKEFDNFMRLDK 271 (290)
T ss_dssp HHHHHHHHHHHT-TCTTTHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHHHh-cCHHHHHHHHHHHHHHhhcCH
Confidence 234445555443 234557777777766555543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.58 E-value=8.4e-08 Score=71.34 Aligned_cols=90 Identities=19% Similarity=0.048 Sum_probs=81.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHh
Q 048578 371 GCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAA 448 (519)
Q Consensus 371 ~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 448 (519)
..+...+.+.|++++|...|++. ...| +...|..+..++.. .|++++|+..++++++.+|.++.++..++.+|..
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~---~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~ 96 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAE---NEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 96 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhh---hhhHHHhhcccccccccccccccchHHHHHHHHH
Confidence 34677888999999999999998 5566 56788888888999 9999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHH
Q 048578 449 KAQWDDAGKMRRLMK 463 (519)
Q Consensus 449 ~g~~~~A~~~~~~m~ 463 (519)
.|++++|.+.+++..
T Consensus 97 ~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 97 EHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998853
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=5.2e-07 Score=71.87 Aligned_cols=95 Identities=15% Similarity=0.081 Sum_probs=84.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 048578 370 YGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYA 447 (519)
Q Consensus 370 ~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 447 (519)
+......|.+.|++++|+..|++. .+.| +...|..+...+.. .|++++|...++++++.+|.+..+|..++.+|.
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~---~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~ 89 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR---TECYGYALGDATRAIELDKKYIKGYYRRAASNM 89 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHh---ccccchHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence 344567788999999999999998 5566 56678888888999 999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHhCCC
Q 048578 448 AKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 448 ~~g~~~~A~~~~~~m~~~~~ 467 (519)
..|++++|...+++......
T Consensus 90 ~~g~~~eA~~~~~~a~~~~p 109 (159)
T d1a17a_ 90 ALGKFRAALRDYETVVKVKP 109 (159)
T ss_dssp HTTCHHHHHHHHHHHHHHST
T ss_pred HcCCHHHHHHHHHHHHHcCC
Confidence 99999999999999987553
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=1.7e-06 Score=69.51 Aligned_cols=85 Identities=13% Similarity=0.034 Sum_probs=72.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 048578 368 KHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNI 445 (519)
Q Consensus 368 ~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 445 (519)
.+|+.+..+|.+.|++++|+..++.. .+.| +...+..+..++.. .|++++|...|+++++++|+|+.+...+..+
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~---~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~ 139 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLA---VNDFELARADFQKVLQLYPNNKAAKTQLAVC 139 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHH---hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45777888999999999999999888 5566 66788888888999 9999999999999999999999999999888
Q ss_pred HHhcCCchHH
Q 048578 446 YAAKAQWDDA 455 (519)
Q Consensus 446 ~~~~g~~~~A 455 (519)
..+.+...+.
T Consensus 140 ~~~~~~~~~~ 149 (170)
T d1p5qa1 140 QQRIRRQLAR 149 (170)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7766655544
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.43 E-value=2.6e-06 Score=75.37 Aligned_cols=162 Identities=10% Similarity=-0.069 Sum_probs=102.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCC----ChhHHHH
Q 048578 302 IIGGLAIHGCGEEAVKMFWQMQMS----GIKPD-DVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEP----NVKHYGC 372 (519)
Q Consensus 302 l~~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~ 372 (519)
....|...|++++|.+.|.+..+. +-.++ ..+|..+..+|.+.|++++|...+++..+...-.. ...++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 456667777777777777766431 21222 23677777778888888888877776654211111 1344555
Q ss_pred HHHHHHh-cCChHHHHHHHHhC-------CCCCC-HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCc------
Q 048578 373 LVDLLCR-ARLLDEAYEVIRNM-------PMEPN-AVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDG------ 437 (519)
Q Consensus 373 l~~~~~~-~~~~~~A~~~~~~~-------~~~p~-~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~------ 437 (519)
+...|.. .|++++|++.+++. +..+. ..++..+...+.. .|++++|...++++....|.++.
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~---~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 199 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL---DGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHH---cChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence 6666644 58888888877765 11111 2356666777777 88888888888888877765432
Q ss_pred -hHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048578 438 -NYVLMSNIYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 438 -~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
.+...+..+...|+++.|.+.+++..+..
T Consensus 200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~ 229 (290)
T d1qqea_ 200 DYFLKKGLCQLAATDAVAAARTLQEGQSED 229 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC-
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 24456666777888888888888776544
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=5.8e-07 Score=67.51 Aligned_cols=107 Identities=17% Similarity=0.029 Sum_probs=77.8
Q ss_pred HHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCC---hHHHHHHHHhC-CCCCCH---HHHHHHHH
Q 048578 335 IAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARL---LDEAYEVIRNM-PMEPNA---VLWGSLLT 407 (519)
Q Consensus 335 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~-~~~p~~---~~~~~ll~ 407 (519)
..+++.+...+++++|.+.|++... .-+.++.++..+..++.+.++ +++|+.+|+++ ...|+. .++..+..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~--~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKA--AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 3466777778888888888888877 234566777788888876554 44688888876 445533 25666777
Q ss_pred HHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 048578 408 ACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIY 446 (519)
Q Consensus 408 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 446 (519)
+|.. .|++++|.+.|+++++.+|++..+......+.
T Consensus 81 ~y~~---~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~ 116 (122)
T d1nzna_ 81 GNYR---LKEYEKALKYVRGLLQTEPQNNQAKELERLID 116 (122)
T ss_dssp HHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHH---HhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 7888 88999999999999999998876665554433
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.31 E-value=0.0003 Score=60.60 Aligned_cols=228 Identities=9% Similarity=-0.101 Sum_probs=126.4
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHcCCCcchhHHHH
Q 048578 195 VVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACAN----LGASELGKWVHEFVNKNCIILNDKLGAA 270 (519)
Q Consensus 195 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 270 (519)
+..+..|...+.+.+++++|++.|++..+.| +...+..|...|.. ..+...+...+....+.+
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---------- 68 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---------- 68 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc----------
Confidence 4455555666666677777777777766654 33344344444433 234455555555544433
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH----Hh
Q 048578 271 LTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAI----HGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTA----CS 342 (519)
Q Consensus 271 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~----~~ 342 (519)
+......+...+.. .++.+.|...++...+.|.. .....+... ..
T Consensus 69 ------------------------~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~ 121 (265)
T d1ouva_ 69 ------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKV 121 (265)
T ss_dssp ------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSS
T ss_pred ------------------------ccchhhccccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCc
Confidence 12222222222221 34555666666666555421 111111111 12
Q ss_pred ccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHcc-ccCCCC
Q 048578 343 HAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCR----ARLLDEAYEVIRNMPMEPNAVLWGSLLTACAS-ADDGAN 417 (519)
Q Consensus 343 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~-~~~~~~ 417 (519)
.......+...+..... ..+...+..|...|.. ..+...+..+++...-..+......+...+.. .+...+
T Consensus 122 ~~~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d 197 (265)
T d1ouva_ 122 VTRDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKN 197 (265)
T ss_dssp SCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCC
T ss_pred ccchhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccc
Confidence 23455666666665554 2445566666666664 34555666666655112244444444333332 122568
Q ss_pred HHHHHHHHHHHHhhCCCCCchHHHHHHHHHh----cCCchHHHHHHHHHHhCCCc
Q 048578 418 VELAEIAMERLIKLEPFNDGNYVLMSNIYAA----KAQWDDAGKMRRLMKERNIV 468 (519)
Q Consensus 418 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~ 468 (519)
++.|..+|+++.+.+ ++.++..|+.+|.+ ..++++|.+.|++..+.|..
T Consensus 198 ~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 198 FKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred hhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 999999999988876 46788889998886 34889999999998887764
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=2.7e-07 Score=69.40 Aligned_cols=96 Identities=7% Similarity=-0.024 Sum_probs=80.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCC--CchHHHHHHHH
Q 048578 371 GCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFN--DGNYVLMSNIY 446 (519)
Q Consensus 371 ~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~ 446 (519)
..++..+...+++++|.+.|++. .+.| +..++..+..++..+++.+++++|+.+++++++.+|.+ ..++..++.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 45778888999999999999998 5555 56788888888887555667778999999999988764 34889999999
Q ss_pred HhcCCchHHHHHHHHHHhCC
Q 048578 447 AAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 447 ~~~g~~~~A~~~~~~m~~~~ 466 (519)
.+.|++++|.+.|++..+..
T Consensus 83 ~~~g~~~~A~~~~~~aL~~~ 102 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQTE 102 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhhhHHHHHHHHHHHHhC
Confidence 99999999999999998744
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.25 E-value=9.1e-06 Score=65.00 Aligned_cols=93 Identities=13% Similarity=0.032 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 048578 368 KHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNI 445 (519)
Q Consensus 368 ~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 445 (519)
.+|+.+..+|.+.|++++|+..+++. .+.| +...|..+..++.. .|++++|...|+++++++|+++.+...+..+
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~---l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~ 141 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLL---MNEFESAKGDFEKVLEVNPQNKAARLQIFMC 141 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 35667888899999999999999988 5455 66788888889999 9999999999999999999999999988888
Q ss_pred HHhcCCchH-HHHHHHHHH
Q 048578 446 YAAKAQWDD-AGKMRRLMK 463 (519)
Q Consensus 446 ~~~~g~~~~-A~~~~~~m~ 463 (519)
..+.+...+ ..+++.+|-
T Consensus 142 ~~~~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 142 QKKAKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHH
Confidence 877665543 444555543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.21 E-value=6.6e-06 Score=65.94 Aligned_cols=64 Identities=9% Similarity=-0.067 Sum_probs=58.7
Q ss_pred HHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 401 LWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 401 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
+|..+..+|.. .|++++|+..++++++++|.++.++..++.+|...|++++|...|++..+.+.
T Consensus 64 ~~~nla~~y~k---~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P 127 (170)
T d1p5qa1 64 SHLNLAMCHLK---LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP 127 (170)
T ss_dssp HHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHh---hhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 56667777888 99999999999999999999999999999999999999999999999987543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.15 E-value=8.9e-06 Score=65.16 Aligned_cols=86 Identities=7% Similarity=-0.024 Sum_probs=71.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHH
Q 048578 366 NVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMS 443 (519)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 443 (519)
....|..+..++.+.|++++|+..+++. .+.| +...|..+..++.. .|+++.|...|+++++++|+++.+...+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~---l~~~~~A~~~~~~al~l~p~n~~~~~~l~ 152 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQG---LKEYDQALADLKKAQEIAPEDKAIQAELL 152 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHH---ccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4556778889999999999999999888 6677 56688888888999 99999999999999999999988888887
Q ss_pred HHHHhcCCchH
Q 048578 444 NIYAAKAQWDD 454 (519)
Q Consensus 444 ~~~~~~g~~~~ 454 (519)
.+..+.....+
T Consensus 153 ~~~~~l~~~~~ 163 (169)
T d1ihga1 153 KVKQKIKAQKD 163 (169)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77765544443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.14 E-value=2.9e-05 Score=60.76 Aligned_cols=63 Identities=11% Similarity=-0.059 Sum_probs=50.3
Q ss_pred HHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048578 401 LWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 401 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
+|..+..+|.. .|++++|++.++++++.+|.+..+|..++.+|...|++++|...|++..+.+
T Consensus 69 ~~~Nla~~~~~---l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~ 131 (153)
T d2fbna1 69 CNLNLATCYNK---NKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 131 (153)
T ss_dssp HHHHHHHHHHH---TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHhhHHHHHHH---hcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 55566667777 8888888888888888888888888888888888888888888888876643
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.13 E-value=1.8e-05 Score=61.99 Aligned_cols=78 Identities=13% Similarity=-0.056 Sum_probs=67.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 048578 368 KHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNI 445 (519)
Q Consensus 368 ~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 445 (519)
.+|..+..+|.+.|++++|++.+++. .+.| +..+|..+..++.. .|+++.|...|+++++++|.|+.+...+..+
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~---lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~ 144 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMY---FGFLEEAKENLYKAASLNPNNLDIRNSYELC 144 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 46778899999999999999999988 5566 66799999999999 9999999999999999999998888777665
Q ss_pred HHh
Q 048578 446 YAA 448 (519)
Q Consensus 446 ~~~ 448 (519)
..+
T Consensus 145 ~~k 147 (153)
T d2fbna1 145 VNK 147 (153)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.07 E-value=5.4e-06 Score=62.88 Aligned_cols=92 Identities=14% Similarity=0.121 Sum_probs=60.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCc-------hHH
Q 048578 370 YGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDG-------NYV 440 (519)
Q Consensus 370 ~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~ 440 (519)
+..+...+.+.|++++|++.|++. .+.| +...+..+..+|.. .|+++.|...++++++++|.++. +|.
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~---~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~ 83 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE---KGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHH---cCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 344566677777777777777666 3344 45566666667777 77777777777777777766554 344
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHh
Q 048578 441 LMSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 441 ~l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
.++..+...+++++|.+.+++...
T Consensus 84 ~lg~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 84 RIGNSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHh
Confidence 455556666777777777766543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.06 E-value=1.3e-05 Score=58.92 Aligned_cols=89 Identities=8% Similarity=-0.121 Sum_probs=55.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhc
Q 048578 301 SIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRA 380 (519)
Q Consensus 301 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 380 (519)
.+...+.+.|++++|+..|++..... +-+...|..+..++.+.|++++|+..|++..+ -.+.+...|..+...|...
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccc--cccccccchHHHHHHHHHC
Confidence 34455566666777777776666532 22345666666666777777777777766665 2334456666666667777
Q ss_pred CChHHHHHHHHh
Q 048578 381 RLLDEAYEVIRN 392 (519)
Q Consensus 381 ~~~~~A~~~~~~ 392 (519)
|++++|++.+++
T Consensus 98 g~~~~A~~~l~~ 109 (112)
T d1hxia_ 98 HNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 777777666654
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.03 E-value=0.0011 Score=56.75 Aligned_cols=94 Identities=11% Similarity=-0.067 Sum_probs=67.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCC-CchhHHHHHHHHHHH----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048578 164 IHSLTRLITFYCNFGDVKSAQLLFDQMTE-KNVVTWTAMINGHVK----QKNYREGIDLFRKMRDSGVEVNELTLVSVLS 238 (519)
Q Consensus 164 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 238 (519)
+..+..|...+.+.+++++|.++|++..+ .+..++..|...|.. ..++..|...++.....+ +......+..
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~~ 78 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGN 78 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhcccc
Confidence 44566677778889999999999998865 566677777777776 668899999998887765 2333333333
Q ss_pred HHh----ccCChHHHHHHHHHHHHcC
Q 048578 239 ACA----NLGASELGKWVHEFVNKNC 260 (519)
Q Consensus 239 ~~~----~~~~~~~a~~~~~~~~~~~ 260 (519)
.+. ...+.+.+...+....+.|
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~a~~~g 104 (265)
T d1ouva_ 79 LYYSGQGVSQNTNKALQYYSKACDLK 104 (265)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred ccccccccchhhHHHHHHHhhhhhhh
Confidence 332 2457777888888777766
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.01 E-value=8.2e-07 Score=85.14 Aligned_cols=109 Identities=8% Similarity=-0.102 Sum_probs=45.4
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHc
Q 048578 333 TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPN-AVLWGSLLTACA 410 (519)
Q Consensus 333 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~ 410 (519)
.+..+...+.+.|+.+.|...+...... .| ..++..+...+...|++++|...|++. .+.|+ ...|+.+...+.
T Consensus 122 ~~~~lg~~~~~~~~~~~A~~~~~~al~~---~~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~ 197 (497)
T d1ya0a1 122 KSSQLGIISNKQTHTSAIVKPQSSSCSY---IC-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILAS 197 (497)
T ss_dssp ---------------------CCHHHHH---HH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHH
T ss_pred HHHHhHHHHHhCCCHHHHHHHHHHHhCC---CH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 4444555555555555555554444331 01 234445555555555555555555555 44443 235555555555
Q ss_pred cccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHh
Q 048578 411 SADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAA 448 (519)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 448 (519)
. .|+..+|...|.+++...|+.+.++..|..++.+
T Consensus 198 ~---~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 198 S---KGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp H---TTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred H---cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 5 5555555555555555555555555555555543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.99 E-value=1.8e-05 Score=63.60 Aligned_cols=120 Identities=13% Similarity=0.084 Sum_probs=83.0
Q ss_pred HHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChH-HHHHHHHhCCCCCCHHHHHHHHHHHccccC
Q 048578 336 AVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLD-EAYEVIRNMPMEPNAVLWGSLLTACASADD 414 (519)
Q Consensus 336 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 414 (519)
.........|++++|...|.....-+.-.+-... ..+.+- ....-++. -....+..+...+..
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~---------~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~--- 79 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALREWRGPVLDDL---------RDFQFVEPFATALVE----DKVLAHTAKAEAEIA--- 79 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG---------TTSTTHHHHHHHHHH----HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcccccccC---------cchHHHHHHHHHHHH----HHHHHHHHHHHHHHH---
Confidence 3445677788888888888888762211110000 000100 00111111 013456777888888
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH-----hCCCccCC
Q 048578 415 GANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMK-----ERNIVKNP 471 (519)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~ 471 (519)
.|++++|...++++++.+|.+...|..++.+|.+.|++++|++.|+++. +.|+.|.+
T Consensus 80 ~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~ 141 (179)
T d2ff4a2 80 CGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 141 (179)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred CCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCH
Confidence 9999999999999999999999999999999999999999999999984 46787644
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.95 E-value=0.0051 Score=54.04 Aligned_cols=136 Identities=10% Similarity=0.040 Sum_probs=69.9
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHHHHHhCCCCCchhHHHHHHH
Q 048578 93 NPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKSKDFNSVIHSLTRLIT 172 (519)
Q Consensus 93 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 172 (519)
.+|..--..+..-|.+.|.++.|..+|..+.. |..++..+.+.++.+.+.+.+.+.. +..+|..+..
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~~----~~~~~k~~~~ 77 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKAN----STRTWKEVCF 77 (336)
T ss_dssp CC----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHHT----CHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHcC----CHHHHHHHHH
Confidence 35555555667777888888888888876654 5566666666666666666666553 3345555566
Q ss_pred HHHhcCChHHHHHHHhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 048578 173 FYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANL 243 (519)
Q Consensus 173 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 243 (519)
.+.+..+...|.-+ ......++.....++..|-..|.+++...+++..... -..+...++.++..|++.
T Consensus 78 ~l~~~~e~~la~i~-~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 78 ACVDGKEFRLAQMC-GLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF 146 (336)
T ss_dssp HHHHTTCHHHHHHT-TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTT
T ss_pred HHHhCcHHHHHHHH-HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHh
Confidence 66665555443221 1111233334455666677777777777777665432 134555566666666654
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.91 E-value=2e-05 Score=62.96 Aligned_cols=65 Identities=9% Similarity=-0.045 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048578 399 AVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 399 ~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
...+..+..++.. .|++++|+..++++++++|.++.+|..++.+|.+.|++++|.+.|++..+..
T Consensus 77 ~~~~~nla~~~~~---~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~ 141 (169)
T d1ihga1 77 LSCVLNIGACKLK---MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 141 (169)
T ss_dssp HHHHHHHHHHHHH---TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHh---hcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 3466667777888 9999999999999999999999999999999999999999999999998743
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.89 E-value=6.4e-05 Score=59.84 Aligned_cols=63 Identities=11% Similarity=0.013 Sum_probs=57.4
Q ss_pred HHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048578 401 LWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 401 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
.|..+..++.. .|++++|+..++++++++|.+..+|..++.+|...|++++|...|++..+.+
T Consensus 66 ~~~Nla~~~~~---l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~ 128 (168)
T d1kt1a1 66 AFLNLAMCYLK---LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 128 (168)
T ss_dssp HHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHhHHHHHHH---hhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 45556667888 9999999999999999999999999999999999999999999999988754
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.80 E-value=0.00012 Score=55.13 Aligned_cols=58 Identities=9% Similarity=-0.040 Sum_probs=30.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHH
Q 048578 301 SIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRR 359 (519)
Q Consensus 301 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 359 (519)
.+...+.+.|++++|+..|++.++.+ +.+...+..+..+|.+.|++++|+..++++.+
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 66 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHH
Confidence 34445555555555555555555432 22344555555555555555555555555443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.73 E-value=3.3e-05 Score=59.72 Aligned_cols=128 Identities=12% Similarity=0.010 Sum_probs=70.9
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc----------CcHHHHHHHHHHcHHhcCCCCChhHHHHHHH
Q 048578 306 LAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHA----------GLIEKGKEIFYNMRRDYKVEPNVKHYGCLVD 375 (519)
Q Consensus 306 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 375 (519)
|-+.+.+++|...|+...+.. +.+..++..+..+|... +.+++|+..|++..+ --+.+..+|..+..
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~--l~P~~~~a~~~lG~ 83 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGN 83 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH--hcchhhHHHhhHHH
Confidence 344555666666666666542 33344555555555433 233445555555544 12233444444444
Q ss_pred HHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHH
Q 048578 376 LLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDA 455 (519)
Q Consensus 376 ~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 455 (519)
+|...|++ .++... . .++++.|.+.|+++++++|++...+..|... .+|
T Consensus 84 ~y~~~g~~------------~~~~~~---------~---~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ka 132 (145)
T d1zu2a1 84 AYTSFAFL------------TPDETE---------A---KHNFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AKA 132 (145)
T ss_dssp HHHHHHHH------------CCCHHH---------H---HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HTH
T ss_pred HHHHcccc------------hhhHHH---------H---HHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------HHH
Confidence 44433321 011100 0 2357889999999999999987766666555 466
Q ss_pred HHHHHHHHhCCC
Q 048578 456 GKMRRLMKERNI 467 (519)
Q Consensus 456 ~~~~~~m~~~~~ 467 (519)
.+++.+..+.|+
T Consensus 133 ~~~~~e~~k~~~ 144 (145)
T d1zu2a1 133 PQLHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHHHSSS
T ss_pred HHHHHHHHHHhc
Confidence 677777666654
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.65 E-value=1e-05 Score=77.23 Aligned_cols=171 Identities=10% Similarity=-0.045 Sum_probs=96.7
Q ss_pred hcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 048578 277 KCGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEI 353 (519)
Q Consensus 277 ~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~ 353 (519)
..+.++.++..+....+ ++...+..+...+.+.|+.+.|...+++.... .| ..++..+...+...|++++|...
T Consensus 98 a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~~-~~~~~~LG~l~~~~~~~~~A~~~ 174 (497)
T d1ya0a1 98 ASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY--IC-QHCLVHLGDIARYRNQTSQAESY 174 (497)
T ss_dssp HHHHHHHHHHHHTC-------------------------------CCHHHHH--HH-HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC--CH-HHHHHHHHHHHHHcccHHHHHHH
Confidence 34566777766665543 34566777888888999999999888776542 11 35788889999999999999999
Q ss_pred HHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhh
Q 048578 354 FYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM--PMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKL 431 (519)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~ 431 (519)
|.+..+ -.+.+...|+.|...+...|+..+|...|.+. -..|...++..|...+.......+ + .+.
T Consensus 175 y~~A~~--l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~~~~~---~-------~~~ 242 (497)
T d1ya0a1 175 YRHAAQ--LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRD---E-------VKT 242 (497)
T ss_dssp HHHHHH--HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHTTSCC---C-------CCS
T ss_pred HHHHHH--HCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhhh---h-------hcc
Confidence 999988 34556689999999999999999999999887 335677788888777655111110 0 001
Q ss_pred CCC---CCchHHHHHHHHHhcCCchHHHHHHHHH
Q 048578 432 EPF---NDGNYVLMSNIYAAKAQWDDAGKMRRLM 462 (519)
Q Consensus 432 ~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m 462 (519)
.+. -...+..+...+...+.+++..++.+++
T Consensus 243 ~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~~~~ 276 (497)
T d1ya0a1 243 KWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKL 276 (497)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHhCCchhhHHHHHHHH
Confidence 111 1124445555566667777666655544
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.61 E-value=5.8e-05 Score=64.78 Aligned_cols=129 Identities=9% Similarity=-0.052 Sum_probs=87.6
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHH
Q 048578 306 LAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDE 385 (519)
Q Consensus 306 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 385 (519)
..+.|++++|+..+++.++.. +-|...+..+...++..|++++|...|+...+. .+-+...+..+...+...+..++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhccccHH
Confidence 345789999999999988863 455678889999999999999999999998872 22334555555555555555554
Q ss_pred HHHHHHhC--CCCCCH-HHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHH
Q 048578 386 AYEVIRNM--PMEPNA-VLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYV 440 (519)
Q Consensus 386 A~~~~~~~--~~~p~~-~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 440 (519)
+..-.... ...|+. ..+......+.. .|+.++|...++++.+..|..+..++
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~---~gd~~~A~~~~~~a~e~~p~~~~~~~ 137 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMV---SQDYEQVSELALQIEELRQEKGFLAN 137 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCCCcccc
Confidence 44333222 123332 233333445666 88999999999999999888666543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.60 E-value=0.00017 Score=56.48 Aligned_cols=88 Identities=15% Similarity=-0.060 Sum_probs=61.7
Q ss_pred HHHHhcCChHHHHHHHHhC----CCCCC----------HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC------
Q 048578 375 DLLCRARLLDEAYEVIRNM----PMEPN----------AVLWGSLLTACASADDGANVELAEIAMERLIKLEPF------ 434 (519)
Q Consensus 375 ~~~~~~~~~~~A~~~~~~~----~~~p~----------~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~------ 434 (519)
..+...|++++|++.|++. +..|+ ...|+.+..+|.. .|++++|...++++++..|.
T Consensus 17 ~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~---lg~~~~A~~~~~~al~~~~~~~~~~~ 93 (156)
T d2hr2a1 17 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG---LRSFDEALHSADKALHYFNRRGELNQ 93 (156)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHH---cCccchhhHhhhhhhhcccccccccc
Confidence 3444556666666666554 11111 3466777777888 88888888888888765432
Q ss_pred -----CCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048578 435 -----NDGNYVLMSNIYAAKAQWDDAGKMRRLMKER 465 (519)
Q Consensus 435 -----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 465 (519)
...++..++.+|...|++++|.+.|++..+.
T Consensus 94 ~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 94 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1236788999999999999999999998764
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.57 E-value=0.00018 Score=50.72 Aligned_cols=74 Identities=9% Similarity=-0.012 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC--------CCCCC-HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchH
Q 048578 369 HYGCLVDLLCRARLLDEAYEVIRNM--------PMEPN-AVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNY 439 (519)
Q Consensus 369 ~~~~l~~~~~~~~~~~~A~~~~~~~--------~~~p~-~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 439 (519)
.+-.+...+.+.|++++|...|++. ...++ ..++..+..++.+ .|++++|...++++++++|+++.++
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~---~g~~~~A~~~y~~aL~l~P~~~~a~ 83 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ---QGDLDKALLLTKKLLELDPEHQRAN 83 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHh---cCChHHHHHHHHHHHHhCcCCHHHH
Confidence 3445677777888888887777765 11223 4577888888999 9999999999999999999998888
Q ss_pred HHHHHH
Q 048578 440 VLMSNI 445 (519)
Q Consensus 440 ~~l~~~ 445 (519)
..+...
T Consensus 84 ~Nl~~~ 89 (95)
T d1tjca_ 84 GNLKYF 89 (95)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.51 E-value=0.001 Score=52.96 Aligned_cols=72 Identities=7% Similarity=0.063 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHH----hcCCCCChhH
Q 048578 297 CTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRR----DYKVEPNVKH 369 (519)
Q Consensus 297 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~ 369 (519)
..+..+...+...|++++|+..++++.+.. +-+...|..++.++...|+.++|++.|+.+.+ +.|+.|...+
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 345556666677777777777777766543 34555677777777777777777777666533 2466666544
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.49 E-value=0.038 Score=50.98 Aligned_cols=116 Identities=9% Similarity=0.003 Sum_probs=64.6
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcC--ccchHHHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHH
Q 048578 105 GYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGD--LRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKS 182 (519)
Q Consensus 105 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 182 (519)
-..+.|+...+.++...+... | ...|-..-..-.. .....++..++.+..+.+.....-...+..+.+.++++.
T Consensus 15 ~a~~~~~~~~~~~~~~~L~dy---p-L~pYl~~~~l~~~~~~~~~~~i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~w~~ 90 (450)
T d1qsaa1 15 QAWDNRQMDVVEQMMPGLKDY---P-LYPYLEYRQITDDLMNQPAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRG 90 (450)
T ss_dssp HHHHTTCHHHHHHHSGGGTTS---T-THHHHHHHHHHHTGGGCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHhhhcCC---C-CHHHHHHHHHHhccccCCHHHHHHHHHHCCCChhHHHHHHHHHHHHHhccCHHH
Confidence 344566666666665555321 2 2222222221112 222555666666655333344444555677788888887
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 048578 183 AQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSG 225 (519)
Q Consensus 183 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 225 (519)
....+..-+ .+...-.....+....|+.+.|...+..+-..|
T Consensus 91 ~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~ 132 (450)
T d1qsaa1 91 LLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG 132 (450)
T ss_dssp HHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred HHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence 776554322 244444566777888888888888877765554
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.41 E-value=3.8e-05 Score=59.40 Aligned_cols=97 Identities=13% Similarity=0.098 Sum_probs=64.8
Q ss_pred ccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHccccCCCCHHHHH
Q 048578 343 HAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVELAE 422 (519)
Q Consensus 343 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~ 422 (519)
+.+.+++|...|+...+ .-|.+...+..+..+|...+++..+.+ . .+.+++|+
T Consensus 9 r~~~fe~A~~~~e~al~--~~P~~~~~~~~~g~~l~~~~~~~~~~e----------------------~---~~~~~~Ai 61 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISD----------------------A---KQMIQEAI 61 (145)
T ss_dssp HHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHH----------------------H---HHHHHHHH
T ss_pred HHccHHHHHHHHHHHHh--hCCcchHHHHHHHHHHHHhhhhhhhhH----------------------H---HHHHHHHH
Confidence 34455555555555555 223344455555555544443333322 1 34578999
Q ss_pred HHHHHHHhhCCCCCchHHHHHHHHHhcCC-----------chHHHHHHHHHHhCC
Q 048578 423 IAMERLIKLEPFNDGNYVLMSNIYAAKAQ-----------WDDAGKMRRLMKERN 466 (519)
Q Consensus 423 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~m~~~~ 466 (519)
..++++++++|+++.+|..++.+|...|+ +++|.+.|++..+..
T Consensus 62 ~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~ 116 (145)
T d1zu2a1 62 TKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 116 (145)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccC
Confidence 99999999999999999999999987664 688888888887644
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.29 E-value=0.047 Score=47.66 Aligned_cols=217 Identities=12% Similarity=0.042 Sum_probs=124.3
Q ss_pred CCchhHHHHHHHHHhhcCCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHH
Q 048578 60 NRTISDTQLAKLIESLVNSSQIAYAHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLK 139 (519)
Q Consensus 60 ~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 139 (519)
||..--..+.+.|.+. |.++.|..++..+. -|..++..+.+.++++.|.+++.+. -+..+|..+..
T Consensus 12 ~n~~d~~~i~~~c~~~---~lye~A~~lY~~~~-----d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~ 77 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDE---KMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCF 77 (336)
T ss_dssp C-------------------CTTTHHHHHHHTT-----CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHC---CCHHHHHHHHHhCC-----CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHH
Confidence 4444445556666666 99999999998654 4888999999999999999988655 25568888888
Q ss_pred HHcCccchHHHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CchhHHHHHHHHHHHcCChhHHHH
Q 048578 140 ACGDLRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTE---KNVVTWTAMINGHVKQKNYREGID 216 (519)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~ 216 (519)
.|.......-+ .+.... ..........++..|-..|.+++...+++.... .+...++.++..|++.+ .++..+
T Consensus 78 ~l~~~~e~~la--~i~~~~-~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e 153 (336)
T d1b89a_ 78 ACVDGKEFRLA--QMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMRE 153 (336)
T ss_dssp HHHHTTCHHHH--HHTTTT-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHH
T ss_pred HHHhCcHHHHH--HHHHHH-hhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHH
Confidence 88766553221 111121 233455556788999999999999999997543 56678899999998865 444444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh
Q 048578 217 LFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNV 296 (519)
Q Consensus 217 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 296 (519)
.+... .-..| ...++..|.+.+.++++ +..|.+.|++++|..+.-.-.. +.
T Consensus 154 ~l~~~---s~~y~---~~k~~~~c~~~~l~~el----------------------v~Ly~~~~~~~~A~~~~i~~~~-~~ 204 (336)
T d1b89a_ 154 HLELF---WSRVN---IPKVLRAAEQAHLWAEL----------------------VFLYDKYEEYDNAIITMMNHPT-DA 204 (336)
T ss_dssp HHHHH---STTSC---HHHHHHHHHTTTCHHHH----------------------HHHHHHTTCHHHHHHHHHHSTT-TT
T ss_pred HHHhc---cccCC---HHHHHHHHHHcCChHHH----------------------HHHHHhcCCHHHHHHHHHHcch-hh
Confidence 44332 11222 23345666666665544 3445566666666555432211 12
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHH
Q 048578 297 CTWNSIIGGLAIHGCGEEAVKMFWQMQ 323 (519)
Q Consensus 297 ~~~~~l~~~~~~~g~~~~a~~~~~~m~ 323 (519)
.-...++..+.+..+.+...++.....
T Consensus 205 ~~~~~f~e~~~k~~N~e~~~~~i~~yL 231 (336)
T d1b89a_ 205 WKEGQFKDIITKVANVELYYRAIQFYL 231 (336)
T ss_dssp CCHHHHHHHHHHCSSTHHHHHHHHHHH
T ss_pred hhHHHHHHHHHccCChHHHHHHHHHHH
Confidence 222334444555555554444444433
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.29 E-value=0.0012 Score=51.37 Aligned_cols=92 Identities=13% Similarity=-0.002 Sum_probs=56.7
Q ss_pred HHhccCcHHHHHHHHHHcHHhcCCCCC----------hhHHHHHHHHHHhcCChHHHHHHHHhC--------CCCCCH--
Q 048578 340 ACSHAGLIEKGKEIFYNMRRDYKVEPN----------VKHYGCLVDLLCRARLLDEAYEVIRNM--------PMEPNA-- 399 (519)
Q Consensus 340 ~~~~~g~~~~a~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~A~~~~~~~--------~~~p~~-- 399 (519)
.+...|++++|+..|++..+-..-.|+ ...|+.+..+|...|++++|.+.+++. ...++.
T Consensus 18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~ 97 (156)
T d2hr2a1 18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK 97 (156)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence 344556666666666665542211121 245666777777777777777666554 122221
Q ss_pred ---HHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC
Q 048578 400 ---VLWGSLLTACASADDGANVELAEIAMERLIKLEPF 434 (519)
Q Consensus 400 ---~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (519)
..+..+..+|.. .|++++|...|++++++.|.
T Consensus 98 ~~~~a~~~~g~~~~~---lg~~eeA~~~~~~Al~l~~~ 132 (156)
T d2hr2a1 98 LWISAVYSRALALDG---LGRGAEAMPEFKKVVEMIEE 132 (156)
T ss_dssp HHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHH---HHHHHHHHHHHHHHHHhhHH
Confidence 245566677888 88999999999998877544
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.23 E-value=7.8e-05 Score=63.93 Aligned_cols=122 Identities=11% Similarity=0.106 Sum_probs=85.2
Q ss_pred HhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHccccCCCCH
Q 048578 341 CSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPNAV-LWGSLLTACASADDGANV 418 (519)
Q Consensus 341 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~~~~~~~ 418 (519)
..+.|++++|+..+++..+ .-+.+...+..++..|+..|++++|...|+.. .+.|+.. .+..+...+.. .+..
T Consensus 6 aL~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a---~~~~ 80 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA---AQAR 80 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH---HHHH
T ss_pred HHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---cccc
Confidence 4567999999999999998 45677899999999999999999999999998 6677544 44434333333 2222
Q ss_pred HHHHHHHHHHHhh-CCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 419 ELAEIAMERLIKL-EPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 419 ~~a~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
+++.......... +|++...+...+..+.+.|+.++|.+.+++..+...
T Consensus 81 ~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p 130 (264)
T d1zbpa1 81 KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ 130 (264)
T ss_dssp HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 2222211111111 233344555667788899999999999999876543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.02 E-value=0.00075 Score=47.33 Aligned_cols=64 Identities=14% Similarity=-0.026 Sum_probs=52.9
Q ss_pred HHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCC-------CchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048578 400 VLWGSLLTACASADDGANVELAEIAMERLIKLEPFN-------DGNYVLMSNIYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 400 ~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
..+-.+...+.. .|++++|...|+++++..|.+ ..++..++.+|.+.|++++|...+++..+.+
T Consensus 6 ddc~~lG~~~~~---~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~ 76 (95)
T d1tjca_ 6 EDSFELGKVAYT---EADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (95)
T ss_dssp HHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence 334456667778 899999999999999876543 3478899999999999999999999998754
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.89 E-value=0.037 Score=39.36 Aligned_cols=141 Identities=9% Similarity=-0.008 Sum_probs=106.2
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHH
Q 048578 306 LAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDE 385 (519)
Q Consensus 306 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 385 (519)
+.-.|.+++..+++.+... ..+..-|+.+|--....-+-+...++++.+-+.+.+.| +++...
T Consensus 12 ~ildG~ve~Gveii~k~~~---ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~--------------C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHH
T ss_pred HHHhhhHHhHHHHHHHHcc---cCCccccceeeeecccccchHHHHHHHHHHhhhcCchh--------------hhcHHH
Confidence 4456888889999988876 44677888888877777888888888888866444433 444444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048578 386 AYEVIRNMPMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKER 465 (519)
Q Consensus 386 A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 465 (519)
....+-.++ .+...+...+..... .|.-+.-.++++.+.+.+..+|.....++.+|.+.|...++.+++.+.-++
T Consensus 75 vv~C~~~~n--~~se~vdlALd~lv~---~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~ 149 (161)
T d1wy6a1 75 VVECGVINN--TLNEHVNKALDILVI---QGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 149 (161)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHH---TTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHH---hccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 444444442 234455666777788 888999999999988877667999999999999999999999999999999
Q ss_pred CCc
Q 048578 466 NIV 468 (519)
Q Consensus 466 ~~~ 468 (519)
|++
T Consensus 150 G~K 152 (161)
T d1wy6a1 150 GEK 152 (161)
T ss_dssp TCH
T ss_pred hHH
Confidence 875
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.93 E-value=0.005 Score=44.52 Aligned_cols=60 Identities=8% Similarity=-0.036 Sum_probs=35.9
Q ss_pred HHHHHccccCCCCHHHHHHHHHHHHhhCCCCC-chHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048578 405 LLTACASADDGANVELAEIAMERLIKLEPFND-GNYVLMSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 405 ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
...++.++...++.++++.+++.+.+.+|.+. ..+..|+.+|.+.|++++|.+.++++.+
T Consensus 41 YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 41 YAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 33344443334556666666666666665543 4556666666666777777766666655
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.79 E-value=0.19 Score=35.72 Aligned_cols=141 Identities=11% Similarity=0.072 Sum_probs=90.3
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHH
Q 048578 205 HVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEA 284 (519)
Q Consensus 205 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 284 (519)
+.-.|..++..+++.+.... .+..-|+.++.-....-+-+.....++.+-+.- | ...++++...
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~F---D----------ls~C~Nlk~v 75 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYF---D----------LDKCQNLKSV 75 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGS---C----------GGGCSCTHHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhc---C----------chhhhcHHHH
Confidence 45567788888888777653 245566666655555555555555555544321 1 1122333333
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCC
Q 048578 285 LRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVE 364 (519)
Q Consensus 285 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 364 (519)
...+-.+- .+.......+..+...|+-++-.++++++.+.+ .|+......+..+|-+.|+..++-+++.+..+. |++
T Consensus 76 v~C~~~~n-~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~-G~K 152 (161)
T d1wy6a1 76 VECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKK-GEK 152 (161)
T ss_dssp HHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCH
T ss_pred HHHHHHhc-chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH-hHH
Confidence 33332221 244455666778888899888889988877654 788888888899999999999999998888873 653
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.25 E-value=0.26 Score=36.05 Aligned_cols=52 Identities=10% Similarity=-0.041 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHh----cCCchHHHHHHHHHHhCCCc
Q 048578 415 GANVELAEIAMERLIKLEPFNDGNYVLMSNIYAA----KAQWDDAGKMRRLMKERNIV 468 (519)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~ 468 (519)
..+.++|.++|+++.+.+ ++.+...|+..|.. ..+.++|.+++++..+.|..
T Consensus 72 ~~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~ 127 (133)
T d1klxa_ 72 KKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 127 (133)
T ss_dssp CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred chhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCH
Confidence 446777777777776655 34566667777665 34677777777777666653
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.00 E-value=0.59 Score=34.00 Aligned_cols=46 Identities=9% Similarity=-0.090 Sum_probs=21.3
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHcHH
Q 048578 311 CGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSH----AGLIEKGKEIFYNMRR 359 (519)
Q Consensus 311 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~ 359 (519)
+.++|.++|++..+.| +......|...|.. ..+.++|..+|+...+
T Consensus 74 d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~ 123 (133)
T d1klxa_ 74 DLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 123 (133)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHH
Confidence 4455555555555544 22223333333332 3455556666555544
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.04 E-value=0.73 Score=30.85 Aligned_cols=63 Identities=16% Similarity=0.163 Sum_probs=50.8
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHH
Q 048578 311 CGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVD 375 (519)
Q Consensus 311 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 375 (519)
+.-++.+-+..+....+.|+.....+.+++|.+.+++..|.++|+.++.+.+ ++...|..++.
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~--~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CcHHHHHHHHH
Confidence 4556777778887888999999999999999999999999999999987544 34556666554
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| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.92 E-value=0.55 Score=33.47 Aligned_cols=51 Identities=14% Similarity=0.057 Sum_probs=23.9
Q ss_pred cHHHHHHHHHHcHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 048578 346 LIEKGKEIFYNMRRDYKVEPN-VKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPN 398 (519)
Q Consensus 346 ~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~ 398 (519)
+.++++.+|+.+.+. .+.+ ...+..|.-+|.+.|++++|.+.++.+ .+.|+
T Consensus 53 d~~~gI~lLe~~~~~--~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~ 105 (124)
T d2pqrb1 53 DERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 105 (124)
T ss_dssp HHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 344556666555542 1122 234444455555555555555555544 33443
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| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.10 E-value=2.8 Score=27.94 Aligned_cols=47 Identities=15% Similarity=0.109 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 048578 213 EGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKN 259 (519)
Q Consensus 213 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 259 (519)
++.+-++.+....+.|++....+.+.+|.+.+|+..|.++++.+...
T Consensus 24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K 70 (105)
T d1v54e_ 24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 70 (105)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44555666666667777777777777777777777777777776654
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| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=82.44 E-value=16 Score=32.42 Aligned_cols=373 Identities=12% Similarity=-0.006 Sum_probs=210.4
Q ss_pred HHHHHHHHHhcCCC-CchhHHHHHHHHHhhcCCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 048578 47 KQVHAQIIKASFDN-RTISDTQLAKLIESLVNSSQIAYAHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGN 125 (519)
Q Consensus 47 ~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 125 (519)
.++...+.+..-.| .......-+..+.+. ++++.....+... ..+...-.....+..+.|+.+.|...+..+-..
T Consensus 56 ~~i~~Fl~~~p~~P~~~~lr~~~l~~L~~~---~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~ 131 (450)
T d1qsaa1 56 VTVTNFVRANPTLPPARTLQSRFVNELARR---EDWRGLLAFSPEK-PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLT 131 (450)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHT---TCHHHHHHHCCSC-CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCChhHHHHHHHHHHHHHhc---cCHHHHHHhccCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence 45555555432221 111222334555666 8888877655432 234444456678888899999999988887765
Q ss_pred CCCCCcchHHHHHHHHcCccchHHHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCchhHHHHHHHHH
Q 048578 126 GLDPDSFTYPILLKACGDLRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGH 205 (519)
Q Consensus 126 g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 205 (519)
|.. .+.....+. ..+.+.+ ..+...+-.-+......|+...|..+...+...........+...
T Consensus 132 ~~~-~p~~c~~l~-------------~~~~~~~--~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~ 195 (450)
T d1qsaa1 132 GKS-QPNACDKLF-------------SVWRASG--KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLA 195 (450)
T ss_dssp SSC-CCTHHHHHH-------------HHHHHTT--CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHH
T ss_pred CCC-CchHHHHHH-------------HHHHhcC--CCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHH
Confidence 431 222222233 2333332 334444445555667789999999999887765555555555544
Q ss_pred HHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc--cCChHHHHHHHHHHHHcCCCcchhH---HHHHHHHHHhcCC
Q 048578 206 VKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACAN--LGASELGKWVHEFVNKNCIILNDKL---GAALTDMYAKCGY 280 (519)
Q Consensus 206 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~ 280 (519)
.. ...+...... . .++......+..++.+ ..+.+.+..++.............. ...+...+...+.
T Consensus 196 ~~---p~~~~~~~~~---~--~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 267 (450)
T d1qsaa1 196 NN---PNTVLTFART---T--GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDV 267 (450)
T ss_dssp HC---GGGHHHHHHH---S--CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTC
T ss_pred hC---hHhHHHHHhc---C--CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCc
Confidence 32 3333322221 1 2233333333333322 3577888888887766542222221 1122223334566
Q ss_pred HHHHHHHHhhcCC--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcH
Q 048578 281 IEEALRVFKIVLE--KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMR 358 (519)
Q Consensus 281 ~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 358 (519)
.+.+..++..... .+.....-.+......+++..+...+..|... ..-...-...+.+++...|+.+.|...|..+.
T Consensus 268 ~~~a~~~~~~~~~~~~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a 346 (450)
T d1qsaa1 268 TDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (450)
T ss_dssp CHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhcccccchHHHHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHh
Confidence 6777766655432 23443344555566788999999999887542 22334566788899999999999999999886
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCC-HHH---HHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC
Q 048578 359 RDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPN-AVL---WGSLLTACASADDGANVELAEIAMERLIKLEPF 434 (519)
Q Consensus 359 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~-~~~---~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (519)
. .++ -|..|.. .+.|..-.. . .......+. ... -..-+..+.. .|....|...+..+....
T Consensus 347 ~----~~~--fYG~LAa--~~Lg~~~~~-~-~~~~~~~~~~~~~~~~~~~ra~~L~~---~g~~~~A~~e~~~l~~~~-- 411 (450)
T d1qsaa1 347 Q----QRG--FYPMVAA--QRIGEEYEL-K-IDKAPQNVDSALTQGPEMARVRELMY---WNLDNTARSEWANLVKSK-- 411 (450)
T ss_dssp T----SCS--HHHHHHH--HHTTCCCCC-C-CCCCCSCCCCHHHHSHHHHHHHHHHH---TTCHHHHHHHHHHHHTTC--
T ss_pred c----CCC--hHHHHHH--HHcCCCCCC-C-cCCCCccHHHhhhcChHHHHHHHHHH---cCCchHHHHHHHHHHhCC--
Confidence 5 233 3433322 222321000 0 000011111 111 1112334556 899999999998876543
Q ss_pred CCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 048578 435 NDGNYVLMSNIYAAKAQWDDAGKMRRLMK 463 (519)
Q Consensus 435 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (519)
++.-...++....+.|.++.|+....+..
T Consensus 412 ~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 412 SKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 46677788999999999999998877653
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