Citrus Sinensis ID: 048655
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 288 | ||||||
| 359488819 | 386 | PREDICTED: beta-1,4-mannosyl-glycoprotei | 1.0 | 0.746 | 0.829 | 1e-143 | |
| 296087591 | 412 | unnamed protein product [Vitis vinifera] | 1.0 | 0.699 | 0.826 | 1e-142 | |
| 255560942 | 387 | acetylglucosaminyltransferase, putative | 1.0 | 0.744 | 0.826 | 1e-142 | |
| 449450064 | 386 | PREDICTED: beta-1,4-mannosyl-glycoprotei | 1.0 | 0.746 | 0.802 | 1e-140 | |
| 296081354 | 671 | unnamed protein product [Vitis vinifera] | 0.986 | 0.423 | 0.823 | 1e-138 | |
| 297815018 | 390 | glycosyl transferase family 17 protein [ | 1.0 | 0.738 | 0.777 | 1e-138 | |
| 225424663 | 393 | PREDICTED: beta-1,4-mannosyl-glycoprotei | 0.986 | 0.722 | 0.823 | 1e-138 | |
| 15232194 | 390 | beta-1,4-mannosyl-glycoprotein [Arabidop | 1.0 | 0.738 | 0.770 | 1e-137 | |
| 356570564 | 387 | PREDICTED: beta-1,4-mannosyl-glycoprotei | 1.0 | 0.744 | 0.788 | 1e-136 | |
| 15241413 | 387 | beta-1,4-mannosyl-glycoprotein [Arabidop | 1.0 | 0.744 | 0.778 | 1e-136 |
| >gi|359488819|ref|XP_002272340.2| PREDICTED: beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust.
Identities = 239/288 (82%), Positives = 261/288 (90%)
Query: 1 MTDGYYSSKKTDDICEDVCGQASRVGLTMSRLRCMLRGFDLKTLFFVFVFIPVFIFGIYL 60
M DGYYSSKKTDDICEDVCGQAS L+M+RLRC+LRG DLKT + V +P F FG+YL
Sbjct: 1 MADGYYSSKKTDDICEDVCGQASHGALSMTRLRCILRGLDLKTYILLIVIVPTFFFGVYL 60
Query: 61 HGQKISYFLRPLWESPPKPFIKIPHYYHENVTMERLCKLHGWGIRESPRRVFDAVLFSTE 120
HGQKISYFLRPLWESPPKPFI+IPHYYHE+V M LC+LHGWGIRESPRRVFDAVLFS E
Sbjct: 61 HGQKISYFLRPLWESPPKPFIEIPHYYHEDVPMANLCRLHGWGIRESPRRVFDAVLFSNE 120
Query: 121 EDILTIRWKELYPFITQFVLLESNSTFTGLPKPLFFASNRHKFKFVEPRLTYGMIGGRFK 180
DILTIRWKELYP++TQ VLLESNSTFTGLPKPL F+ NR KFKF+EPRLTYG IGGRFK
Sbjct: 121 VDILTIRWKELYPYVTQVVLLESNSTFTGLPKPLLFSKNRDKFKFIEPRLTYGTIGGRFK 180
Query: 181 KGENPFVEEAYQRVALDQLLRIAGIEDDDLLIMSDVDEIPSAHTINLLRWCDDIPSILHL 240
KGENPFVEEAYQRVALDQLL+IAGI+DDDLLIMSDVDEIPS+HTINLLRWCDDIP ILHL
Sbjct: 181 KGENPFVEEAYQRVALDQLLKIAGIDDDDLLIMSDVDEIPSSHTINLLRWCDDIPPILHL 240
Query: 241 QLRNYLYSFEYFVDNNSWRASVHQYKRGKTRYAHYRQTDLLFSDAGWH 288
+LRNYLYSFE+F+DN SWRASVH+Y+ GKTRYAHYRQTD + SDAGWH
Sbjct: 241 RLRNYLYSFEFFLDNKSWRASVHRYQIGKTRYAHYRQTDYVLSDAGWH 288
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296087591|emb|CBI34847.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|255560942|ref|XP_002521484.1| acetylglucosaminyltransferase, putative [Ricinus communis] gi|223539383|gb|EEF40974.1| acetylglucosaminyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|449450064|ref|XP_004142784.1| PREDICTED: beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like [Cucumis sativus] gi|449483790|ref|XP_004156692.1| PREDICTED: beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|296081354|emb|CBI16787.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|297815018|ref|XP_002875392.1| glycosyl transferase family 17 protein [Arabidopsis lyrata subsp. lyrata] gi|297321230|gb|EFH51651.1| glycosyl transferase family 17 protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
| >gi|225424663|ref|XP_002285541.1| PREDICTED: beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|15232194|ref|NP_189391.1| beta-1,4-mannosyl-glycoprotein [Arabidopsis thaliana] gi|11994181|dbj|BAB01284.1| unnamed protein product [Arabidopsis thaliana] gi|20466726|gb|AAM20680.1| unknown protein [Arabidopsis thaliana] gi|23198206|gb|AAN15630.1| unknown protein [Arabidopsis thaliana] gi|332643814|gb|AEE77335.1| beta-1,4-mannosyl-glycoprotein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|356570564|ref|XP_003553455.1| PREDICTED: beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|15241413|ref|NP_196952.1| beta-1,4-mannosyl-glycoprotein [Arabidopsis thaliana] gi|7573473|emb|CAB87787.1| putative protein [Arabidopsis thaliana] gi|53850467|gb|AAU95410.1| At5g14480 [Arabidopsis thaliana] gi|55167912|gb|AAV43788.1| At5g14480 [Arabidopsis thaliana] gi|332004656|gb|AED92039.1| beta-1,4-mannosyl-glycoprotein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 288 | ||||||
| TAIR|locus:2091448 | 390 | AT3G27540 [Arabidopsis thalian | 1.0 | 0.738 | 0.75 | 7e-125 | |
| TAIR|locus:2145733 | 387 | AT5G14480 [Arabidopsis thalian | 1.0 | 0.744 | 0.754 | 6.5e-122 | |
| TAIR|locus:2084173 | 388 | AT3G01620 [Arabidopsis thalian | 1.0 | 0.742 | 0.727 | 1.2e-115 | |
| TAIR|locus:2031800 | 392 | AT1G12990 [Arabidopsis thalian | 0.989 | 0.727 | 0.715 | 5e-115 | |
| TAIR|locus:2200191 | 390 | AT1G67880 [Arabidopsis thalian | 0.979 | 0.723 | 0.716 | 5.9e-112 | |
| TAIR|locus:2042280 | 361 | AT2G13290 [Arabidopsis thalian | 0.784 | 0.626 | 0.582 | 3.5e-75 | |
| TAIR|locus:504955860 | 118 | AT3G26445 [Arabidopsis thalian | 0.232 | 0.567 | 0.731 | 3.6e-27 | |
| RGD|3084 | 538 | Mgat3 "mannosyl (beta-1,4-)-gl | 0.590 | 0.315 | 0.301 | 9e-12 | |
| UNIPROTKB|Q09327 | 533 | MGAT3 "Beta-1,4-mannosyl-glyco | 0.590 | 0.318 | 0.301 | 1.2e-11 | |
| UNIPROTKB|E1BJA5 | 536 | MGAT3 "Uncharacterized protein | 0.590 | 0.317 | 0.301 | 1.2e-11 |
| TAIR|locus:2091448 AT3G27540 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1227 (437.0 bits), Expect = 7.0e-125, P = 7.0e-125
Identities = 216/288 (75%), Positives = 251/288 (87%)
Query: 1 MTDGYYSSKKTDDICEDVCGQASRVGLTMSRLRCMLRGFDLKTLXXXXXXXXXXXXXXYL 60
M+DGY +SKKTDDICEDVCGQ S+ T+SRL+C+L+GFDL+T YL
Sbjct: 1 MSDGYINSKKTDDICEDVCGQGSKAAKTISRLKCVLKGFDLRTYLFLFVLMPFGILAIYL 60
Query: 61 HGQKISYFLRPLWESPPKPFIKIPHYYHENVTMERLCKLHGWGIRESPRRVFDAVLFSTE 120
HGQK +YF RPLWESPPKPF IPHYY+ENVTME LC LHGWGIR+SPRRVFDAVLFS E
Sbjct: 61 HGQKFTYFFRPLWESPPKPFQTIPHYYNENVTMESLCSLHGWGIRDSPRRVFDAVLFSNE 120
Query: 121 EDILTIRWKELYPFITQFVLLESNSTFTGLPKPLFFASNRHKFKFVEPRLTYGMIGGRFK 180
+D+LT+RW ELYP++TQFV+LESNSTFTGLPKPL F SN+ +FKFVEPRLTYG IGGRF+
Sbjct: 121 KDLLTVRWNELYPYVTQFVILESNSTFTGLPKPLVFKSNKDQFKFVEPRLTYGTIGGRFR 180
Query: 181 KGENPFVEEAYQRVALDQLLRIAGIEDDDLLIMSDVDEIPSAHTINLLRWCDDIPSILHL 240
KGENPFVEEAYQRVALDQLLRIAGI++DDLLIMSDVDEIPSAHTINLLRWCDDIP +LHL
Sbjct: 181 KGENPFVEEAYQRVALDQLLRIAGIQEDDLLIMSDVDEIPSAHTINLLRWCDDIPPVLHL 240
Query: 241 QLRNYLYSFEYFVDNNSWRASVHQYKRGKTRYAHYRQTDLLFSDAGWH 288
QL+NYLYSFEY+VD+ SWRAS+H+Y GKTRYAH+RQ++++ +D+GWH
Sbjct: 241 QLKNYLYSFEYYVDSKSWRASIHRYSPGKTRYAHFRQSNVMLADSGWH 288
|
|
| TAIR|locus:2145733 AT5G14480 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2084173 AT3G01620 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2031800 AT1G12990 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2200191 AT1G67880 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2042280 AT2G13290 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:504955860 AT3G26445 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| RGD|3084 Mgat3 "mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q09327 MGAT3 "Beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1BJA5 MGAT3 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| GSVIVG00020645001 | SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (387 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
| GSVIVG00029100001 | • | 0.899 |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 288 | |||
| pfam04724 | 357 | pfam04724, Glyco_transf_17, Glycosyltransferase fa | 1e-154 |
| >gnl|CDD|218230 pfam04724, Glyco_transf_17, Glycosyltransferase family 17 | Back alignment and domain information |
|---|
Score = 433 bits (1116), Expect = e-154
Identities = 189/264 (71%), Positives = 212/264 (80%), Gaps = 5/264 (1%)
Query: 26 GLTMSRLRCMLRGFDLKTLFFVFVFIPVFIFGIYLHGQKISYFLRPLWESPPKPFIKIPH 85
L +SRL+C LRG L +FV +P + GIY HGQKISYF RPLWE PPKPF IPH
Sbjct: 1 ALGISRLKCRLRGLFL----PLFVLMPTCLLGIYKHGQKISYFCRPLWEGPPKPFCGIPH 56
Query: 86 YYHENVTMERLCKLHGWGIRESPRRVFDAVLFSTEEDILTIRWKELYPFITQFVLLESNS 145
YY+ENV+ME LCKLHGWG RE+PRRVFDAVLFS E D+L +RW ELYP++ QFVLLESNS
Sbjct: 57 YYYENVSMENLCKLHGWGPRETPRRVFDAVLFSNEFDLLEVRWHELYPYVDQFVLLESNS 116
Query: 146 TFTGLPKPLFFASNRHKFKFVEPRLTYGMIGGRFKKGE-NPFVEEAYQRVALDQLLRIAG 204
TFTGLPKPL+F NR +FKFVE ++ YG I G KKG NPF+EEAYQRVALD LLRIAG
Sbjct: 117 TFTGLPKPLYFLENRGRFKFVESKILYGFIDGFPKKGRKNPFIEEAYQRVALDGLLRIAG 176
Query: 205 IEDDDLLIMSDVDEIPSAHTINLLRWCDDIPSILHLQLRNYLYSFEYFVDNNSWRASVHQ 264
I DDD+LIMSD DEIPS HTIN L+WCD IP +LHL LRNYLYSFEY VD SWRASVH+
Sbjct: 177 IRDDDVLIMSDADEIPSRHTINFLKWCDGIPEVLHLHLRNYLYSFEYPVDGKSWRASVHR 236
Query: 265 YKRGKTRYAHYRQTDLLFSDAGWH 288
Y GKTRYAHYRQTD + +DAGWH
Sbjct: 237 YMPGKTRYAHYRQTDHILADAGWH 260
|
This family represents beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase (EC:2.4.1.144). This enzyme transfers the bisecting GlcNAc to the core mannose of complex N-glycans. The addition of this residue is regulated during development and has functional consequences for receptor signalling, cell adhesion, and tumour progression. Length = 357 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 288 | |||
| PF04724 | 356 | Glyco_transf_17: Glycosyltransferase family 17; In | 100.0 | |
| cd02511 | 229 | Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 | 95.73 | |
| PF13704 | 97 | Glyco_tranf_2_4: Glycosyl transferase family 2 | 92.97 | |
| TIGR01556 | 281 | rhamnosyltran L-rhamnosyltransferase. Rhamnolipids | 85.63 | |
| cd02526 | 237 | GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl tr | 85.09 | |
| cd04186 | 166 | GT_2_like_c Subfamily of Glycosyltransferase Famil | 80.53 |
| >PF04724 Glyco_transf_17: Glycosyltransferase family 17; InterPro: IPR006813 This family represents beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase (2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-87 Score=642.31 Aligned_cols=257 Identities=55% Similarity=1.073 Sum_probs=248.1
Q ss_pred ccccceeeeecCchhHHHHHHHHhhhheeeeEeeceeEeeecCCCCCCCCCCCCCcceEeccCccHHhHHHhcCccccCC
Q 048655 28 TMSRLRCMLRGFDLKTLFFVFVFIPVFIFGIYLHGQKISYFLRPLWESPPKPFIKIPHYYHENVTMERLCKLHGWGIRES 107 (288)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~W~~p~~p~~~iP~~y~~~~~~~~~c~~hgw~~r~~ 107 (288)
+|||++|++|++ ++++++++|+|+++++.++++++|+|||+|||||+|||+|||||+++.+|+++|++|||++|++
T Consensus 2 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~rp~w~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~~R~~ 77 (356)
T PF04724_consen 2 SMSRRRCILRGL----FLFLFVLLPLCVIGVYQHGQSISCFCRPGWHGPPDPFCGIPHYYWESVSMSNLCQLHGWKPRKT 77 (356)
T ss_pred cchhHHHHHHHH----HHHHHHHHHHHhheeeecCceeEEeccCccCCCCCCCCCCCcceeecchhhhcccccCCCcCCC
Confidence 688999999986 6779999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEecCChHHHHHHHHHHhcccccEEEEEEeCCCccCCCccccchhchhcccccCCCEEEEEeCCccCCCC-Cch
Q 048655 108 PRRVFDAVLFSTEEDILTIRWKELYPFITQFVLLESNSTFTGLPKPLFFASNRHKFKFVEPRLTYGMIGGRFKKGE-NPF 186 (288)
Q Consensus 108 pRkIyD~flfs~ElDlLEIRL~EL~dvVD~FVIvESn~TFtG~pKpL~f~~n~~rF~~~~~KIiy~~l~~~~~~~~-~~w 186 (288)
||||||||+||+|+|||||||+||+|+||+|||||||.||||.||||+|.+|+++|+++++||+|+++++.+..+. ++|
T Consensus 78 pRrV~D~~~f~~ElDlLeiRl~eL~~vVD~FVIvEs~~Tf~G~~KpL~f~~~~~~f~~~~~KIiy~~l~~~~~~g~~~~w 157 (356)
T PF04724_consen 78 PRRVYDCFLFNNELDLLEIRLNELYDVVDYFVIVESNRTFTGKPKPLYFAENKERFAFFHDKIIYVTLDDPPEKGRKDPW 157 (356)
T ss_pred CCeEEEEEEeCChHHHHHHHHHHhhCcceEEEEEEECCCcCCCCCCccHHHHHHHHHhhhcceEEEEecCcCCCCCCchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998766554 999
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcEEEeeCCCcCCCHHHHHHHHhcCCCCcceEEEeeeeeeeEEeeeCCCceeeeEEEee
Q 048655 187 VEEAYQRVALDQLLRIAGIEDDDLLIMSDVDEIPSAHTINLLRWCDDIPSILHLQLRNYLYSFEYFVDNNSWRASVHQYK 266 (288)
Q Consensus 187 ~~E~~qRn~l~~~lr~~~~~~dDlIIvSDvDEIP~~~tl~~Lr~cdg~p~~~~l~lr~y~YsF~~~~~~~~W~~~a~~y~ 266 (288)
++|++|||+|.++++.+|+++|||||+|||||||+|++|++||+|||+|++++|+||+|||||+|++++++|+++++.|.
T Consensus 158 ~~E~~qR~~l~~l~~~~~~~~dDliivSDvDEIP~p~~l~~Lr~cd~~p~~l~l~lr~y~YsF~~~~~~~~~r~~~~~~~ 237 (356)
T PF04724_consen 158 DRENYQRNALNGLLRLAGIQDDDLIIVSDVDEIPSPETLKFLRWCDGFPEPLHLRLRFYYYSFQFQHDGKSWRASVHTYS 237 (356)
T ss_pred HHHHHHHHHHHHHhhhcCCCCCCEEEEcCcccccCHHHHHHHHhcCCCCCeeEEEeeceEEEEEEecCCcchhhhhhhhc
Confidence 99999999998888889999999999999999999999999999999999999999999999999999999999988887
Q ss_pred cCccccccccccccccCCCCCC
Q 048655 267 RGKTRYAHYRQTDLLFSDAGWH 288 (288)
Q Consensus 267 ~~~t~y~~~r~~d~~ladaGWH 288 (288)
.+.+.|+|+|+++.+|+|||||
T Consensus 238 ~~~~~~~~~r~~~~il~daGWH 259 (356)
T PF04724_consen 238 QGMRRYRHSRQSDHILADAGWH 259 (356)
T ss_pred cccchhhhhcccCccccCCcee
Confidence 7888999999999999999999
|
4.1.144 from EC). This enzyme transfers the bisecting GlcNAc to the core mannose of complex N-glycans. The addition of this residue is regulated during development and has functional consequences for receptor signalling, cell adhesion, and tumour progression [, ].; GO: 0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0016020 membrane |
| >cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide | Back alignment and domain information |
|---|
| >PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2 | Back alignment and domain information |
|---|
| >TIGR01556 rhamnosyltran L-rhamnosyltransferase | Back alignment and domain information |
|---|
| >cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase | Back alignment and domain information |
|---|
| >cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 288 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-07 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.0 bits (121), Expect = 2e-07
Identities = 52/321 (16%), Positives = 90/321 (28%), Gaps = 94/321 (29%)
Query: 48 FVFIPVFIFGIY--------------LHGQKISYFLRPLWESPPKPFIKIPHYYHENVTM 93
+ F I+ QK+ Y + P W S I H
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS--IQ 231
Query: 94 ERLCKLHGWGIRESPR-----------RVFDAVLFS--TEEDILTIRWKELYPFI----- 135
L +L + + ++A S +LT R+K++ F+
Sbjct: 232 AELRRL--LKSKPYENCLLVLLNVQNAKAWNAFNLSCKI---LLTTRFKQVTDFLSAATT 286
Query: 136 TQFVLLESNSTFTGLPKPL-FFASNRHKFKFVEPR-------LTYGMIGGRFKKGENPFV 187
T L + T T + PR +I + G +
Sbjct: 287 THISLDHHSMTLT-PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW- 344
Query: 188 EEAYQRVALDQLLRI--AGIED----------DDLLIM-SDVDEIPSAHTINLLRWCDDI 234
+ ++ V D+L I + + D L + IP+ ++L+ W D I
Sbjct: 345 -DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH-IPTI-LLSLI-WFDVI 400
Query: 235 P-------------SILHLQLRNYLYS-----FEYFVDNNSWRASVH-----QYKRGKTR 271
S++ Q + S E V + ++H Y KT
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN-EYALHRSIVDHYNIPKTF 459
Query: 272 YAHYRQTDLL----FSDAGWH 288
+ L +S G H
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHH 480
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00