Citrus Sinensis ID: 048749
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 536 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LIL5 | 523 | Putative pentatricopeptid | yes | no | 0.893 | 0.915 | 0.548 | 1e-155 | |
| Q9LFQ4 | 572 | Pentatricopeptide repeat- | no | no | 0.751 | 0.704 | 0.351 | 2e-71 | |
| Q9LZP3 | 599 | Pentatricopeptide repeat- | no | no | 0.759 | 0.679 | 0.315 | 1e-57 | |
| Q9M8M3 | 448 | Pentatricopeptide repeat- | no | no | 0.716 | 0.857 | 0.326 | 4e-57 | |
| Q3EAF8 | 599 | Pentatricopeptide repeat- | no | no | 0.759 | 0.679 | 0.312 | 6e-57 | |
| Q9LEQ7 | 598 | Pentatricopeptide repeat- | no | no | 0.759 | 0.680 | 0.312 | 1e-56 | |
| P0C8A0 | 638 | Pentatricopeptide repeat- | no | no | 0.787 | 0.661 | 0.292 | 4e-52 | |
| Q9FH87 | 637 | Putative pentatricopeptid | no | no | 0.796 | 0.670 | 0.297 | 5e-50 | |
| Q0WP85 | 509 | Pentatricopeptide repeat- | no | no | 0.731 | 0.770 | 0.317 | 6e-49 | |
| Q9FVX2 | 517 | Pentatricopeptide repeat- | no | no | 0.761 | 0.789 | 0.290 | 2e-48 |
| >sp|Q9LIL5|PP233_ARATH Putative pentatricopeptide repeat-containing protein At3g15200 OS=Arabidopsis thaliana GN=At3g15200 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 548 bits (1411), Expect = e-155, Method: Compositional matrix adjust.
Identities = 270/492 (54%), Positives = 352/492 (71%), Gaps = 13/492 (2%)
Query: 25 QLTTQFSKLQSCNSVTSHKTLIPIINLQARN----SEFLFLGRIETAQLVHSLANSDE-K 79
QL + S+ + +S+ + + P +N S F FLG +HSL D+
Sbjct: 12 QLQSALSR-RRISSLVDFRRVFPPETPNHKNNITLSRFHFLG----THFLHSLGAPDKFP 66
Query: 80 SEFQRYPGDEIAINVQNILKTCSVSTKGEIEKALNQCELTLTDDLIVNVINRYRFDWEAA 139
+ F + A++V NI+K S+ +I++ L++C + LT++L++ V+NR R DW+ A
Sbjct: 67 NRFNDDKDKQSALDVHNIIKHHRGSSPEKIKRILDKCGIDLTEELVLEVVNRNRSDWKPA 126
Query: 140 YTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMPD---LVNEKTYGILLN 196
Y + V ++ + S ++N ILDVLG+ RRF E QVFDEM VNEKTY +LLN
Sbjct: 127 YILSQLVVKQSVHLSSSMLYNEILDVLGKMRRFEEFHQVFDEMSKRDGFVNEKTYEVLLN 186
Query: 197 RYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYD 256
RYAAAH V+EA+GVF+RRKEFG DDL AF LL+WLCRYKHVE AET F S + EFG D
Sbjct: 187 RYAAAHKVDEAVGVFERRKEFGIDDDLVAFHGLLMWLCRYKHVEFAETLFCSRRREFGCD 246
Query: 257 IKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQ 316
IK MN+ILNGWCVLGNV+EAKRFWKDII SKC PD V+Y T +NALTKKGKLG A+ L++
Sbjct: 247 IKAMNMILNGWCVLGNVHEAKRFWKDIIASKCRPDVVSYGTMINALTKKGKLGKAMELYR 306
Query: 317 AMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIK 376
AMW+ R PDV CN +IDALCFKKRIPEALEV RE+ +G PNV TYNSL+KHLCKI+
Sbjct: 307 AMWDTRRNPDVKICNNVIDALCFKKRIPEALEVFREISEKGPDPNVVTYNSLLKHLCKIR 366
Query: 377 RMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNV 436
R E V+E ++EME K GSC PN++TF+YLLK ++ ++V VLERM +N C+M++D YN+
Sbjct: 367 RTEKVWELVEEMELKGGSCSPNDVTFSYLLKYSQRSKDVDIVLERMAKNKCEMTSDLYNL 426
Query: 437 ILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKG 496
+ +LYV WD E+KVR W EME+ G+GPDQR+YT+ IHGL+ KG++ +ALSYF EM KG
Sbjct: 427 MFRLYVQWDKEEKVREIWSEMERSGLGPDQRTYTIRIHGLHTKGKIGEALSYFQEMMSKG 486
Query: 497 MVPEPRTGILVN 508
MVPEPRT +L+N
Sbjct: 487 MVPEPRTEMLLN 498
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFQ4|PP383_ARATH Pentatricopeptide repeat-containing protein At5g15010, mitochondrial OS=Arabidopsis thaliana GN=At5g15010 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 270 bits (691), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 145/412 (35%), Positives = 239/412 (58%), Gaps = 9/412 (2%)
Query: 94 VQNILKTCSVSTKGEIEKALNQCELTLTDDLIVNVINRYRFDWEAAYTFFKWVSREGDYS 153
+ ++K C S + E+ L +C++ +++L+V +++R R DWE A+TFF W ++ Y
Sbjct: 100 ISKLVKDCG-SDRKELRNKLEECDVKPSNELVVEILSRVRNDWETAFTFFVWAGKQQGYV 158
Query: 154 PGSNVFNAILDVLGRARRFVELIQVFDEM----PDLVNEKTYGILLNRYAAAHMVEEAIG 209
+++++ +LG+ R+F + DEM P LVN +T I++ +Y A H V +AI
Sbjct: 159 RSVREYHSMISILGKMRKFDTAWTLIDEMRKFSPSLVNSQTLLIMIRKYCAVHDVGKAIN 218
Query: 210 VFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWC- 268
F K F + FQ+LL LCRYK+V A K+++ +D K+ NI+LNGWC
Sbjct: 219 TFHAYKRFKLEMGIDDFQSLLSALCRYKNVSDAGHLIFCNKDKYPFDAKSFNIVLNGWCN 278
Query: 269 VLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVV 328
V+G+ EA+R W ++ + D V+Y++ ++ +K G L L+LF M ++ +PD
Sbjct: 279 VIGSPREAERVWMEMGNVGVKHDVVSYSSMISCYSKGGSLNKVLKLFDRMKKECIEPDRK 338
Query: 329 TCNCIIDALCFKKRIPEALEVLREMKN-RGCLPNVTTYNSLIKHLCKIKRMETVYEYLDE 387
N ++ AL + EA +++ M+ +G PNV TYNSLIK LCK ++ E + DE
Sbjct: 339 VYNAVVHALAKASFVSEARNLMKTMEEEKGIEPNVVTYNSLIKPLCKARKTEEAKQVFDE 398
Query: 388 MEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCE 447
M +K P T++ ++ L+ EEV +L +M + GC+ + +TY ++++ W
Sbjct: 399 MLEKG--LFPTIRTYHAFMRILRTGEEVFELLAKMRKMGCEPTVETYIMLIRKLCRWRDF 456
Query: 448 DKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVP 499
D V W+EM++K +GPD SY VMIHGL+ G++E+A Y+ EM+ KGM P
Sbjct: 457 DNVLLLWDEMKEKTVGPDLSSYIVMIHGLFLNGKIEEAYGYYKEMKDKGMRP 508
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LZP3|PP293_ARATH Pentatricopeptide repeat-containing protein At3g62470, mitochondrial OS=Arabidopsis thaliana GN=At3g62470 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 224 bits (571), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 132/419 (31%), Positives = 219/419 (52%), Gaps = 12/419 (2%)
Query: 89 EIAINVQNILKTCSV-----STKGEIEKALNQCELTLTDDLIVNVINRYRFDWEAAYTFF 143
E + N + + + C V + +E L++ +L L+ DLIV V+ R+R + A+ FF
Sbjct: 123 ESSTNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFF 182
Query: 144 KWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEM--PDLVNEKTYGILLNRYAAA 201
W + ++ S +N+++ +L + R+F ++ V +EM L+ +T+ I + +AAA
Sbjct: 183 CWAAERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAA 242
Query: 202 HMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMN 261
++A+G+F+ K++ + LL L R K + A+ F+ K F ++ T
Sbjct: 243 KERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYT 302
Query: 262 IILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEK 321
++LNGWC + N+ EA R W D+I +PD V + + L + K A++LF M K
Sbjct: 303 VLLNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSK 362
Query: 322 GRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETV 381
G P+V + +I C + + A+E +M + G P+ Y LI K+++TV
Sbjct: 363 GPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTV 422
Query: 382 YEYLDEMEQKNGSCLPNEITFNYLLKSL---KKPEEVPWVLERMERNGCKMSTDTYNVIL 438
YE L EM++K P+ T+N L+K + K PE + +M +N + S T+N+I+
Sbjct: 423 YELLKEMQEKGHP--PDGKTYNALIKLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIM 480
Query: 439 KLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGM 497
K Y + R WEEM KKG+ PD SYTV+I GL +G+ +A Y EM KGM
Sbjct: 481 KSYFMARNYEMGRAVWEEMIKKGICPDDNSYTVLIRGLIGEGKSREACRYLEEMLDKGM 539
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M8M3|PP136_ARATH Pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Arabidopsis thaliana GN=At1g80550 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 223 bits (567), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 129/395 (32%), Positives = 206/395 (52%), Gaps = 11/395 (2%)
Query: 125 IVNVINRYRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEM-- 182
+ + Y DW+ A FF WV RE + + FN ++D+LG+ F + + M
Sbjct: 50 VCEALTCYSNDWQKALEFFNWVERESGFRHTTETFNRVIDILGKYFEFEISWALINRMIG 109
Query: 183 --PDLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHV- 239
+ N T+ I+ RY AH+V+EAI +D+ +F L D ++F NL+ LC +KHV
Sbjct: 110 NTESVPNHVTFRIVFKRYVTAHLVQEAIDAYDKLDDFN-LRDETSFYNLVDALCEHKHVV 168
Query: 240 EVAETFFESEKNEFGYDI---KTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYA 296
E E F G+ + K N+IL GW LG + K +WK + D +Y+
Sbjct: 169 EAEELCFGKNVIGNGFSVSNTKIHNLILRGWSKLGWWGKCKEYWKKMDTEGVTKDLFSYS 228
Query: 297 TFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNR 356
+++ + K GK A++L++ M + K DVV N +I A+ + + + V REM+ R
Sbjct: 229 IYMDIMCKSGKPWKAVKLYKEMKSRRMKLDVVAYNTVIRAIGASQGVEFGIRVFREMRER 288
Query: 357 GCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVP 416
GC PNV T+N++IK LC+ RM Y LDEM ++ C P+ IT+ L L+KP E+
Sbjct: 289 GCEPNVATHNTIIKLLCEDGRMRDAYRMLDEMPKRG--CQPDSITYMCLFSRLEKPSEIL 346
Query: 417 WVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGL 476
+ RM R+G + DTY ++++ + W V + W+ M++ G PD +Y +I L
Sbjct: 347 SLFGRMIRSGVRPKMDTYVMLMRKFERWGFLQPVLYVWKTMKESGDTPDSAAYNAVIDAL 406
Query: 477 YDKGRLEDALSYFHEMRLKGMVPEPRTGILVNDMN 511
KG L+ A Y EM +G+ P R ++ ++
Sbjct: 407 IQKGMLDMAREYEEEMIERGLSPRRRPELVEKSLD 441
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3EAF8|PP294_ARATH Pentatricopeptide repeat-containing protein At3g62540, mitochondrial OS=Arabidopsis thaliana GN=At3g62540 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 222 bits (565), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 131/419 (31%), Positives = 219/419 (52%), Gaps = 12/419 (2%)
Query: 89 EIAINVQNILKTCSV-----STKGEIEKALNQCELTLTDDLIVNVINRYRFDWEAAYTFF 143
E + N + + + C V + +E L++ +L L+ DLIV V+ R+R + A+ FF
Sbjct: 123 ESSTNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFF 182
Query: 144 KWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEM--PDLVNEKTYGILLNRYAAA 201
W + ++ S +N+++ +L + R+F ++ V +EM L+ +T+ I + +AAA
Sbjct: 183 CWAAERQGFAHASRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAA 242
Query: 202 HMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMN 261
++A+G+F+ K++ + LL L R K + A+ F+ K F ++ T
Sbjct: 243 KERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYT 302
Query: 262 IILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEK 321
++LNGWC + N+ EA R W D+I +PD V + + L + K A++LF M K
Sbjct: 303 VLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSK 362
Query: 322 GRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETV 381
G P+V + +I C + + A+E +M + G P+ Y LI K+++TV
Sbjct: 363 GPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTV 422
Query: 382 YEYLDEMEQKNGSCLPNEITFNYLLKSL---KKPEEVPWVLERMERNGCKMSTDTYNVIL 438
YE L EM++K P+ T+N L+K + K PE + +M +N + S T+N+I+
Sbjct: 423 YELLKEMQEKGHP--PDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIM 480
Query: 439 KLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGM 497
K Y + R W+EM KKG+ PD SYTV+I GL +G+ +A Y EM KGM
Sbjct: 481 KSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGM 539
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LEQ7|PP382_ARATH Pentatricopeptide repeat-containing protein At5g14820, mitochondrial OS=Arabidopsis thaliana GN=At5g14820 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 221 bits (563), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 131/419 (31%), Positives = 219/419 (52%), Gaps = 12/419 (2%)
Query: 89 EIAINVQNILKTCSV-----STKGEIEKALNQCELTLTDDLIVNVINRYRFDWEAAYTFF 143
E + N + + + C V + +E L++ +L L+ DLIV V+ R+R + A+ FF
Sbjct: 122 ESSTNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFF 181
Query: 144 KWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEM--PDLVNEKTYGILLNRYAAA 201
W + ++ S +N+++ +L + R+F ++ V +EM L+ +T+ I + +AAA
Sbjct: 182 CWAAERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAA 241
Query: 202 HMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMN 261
++A+G+F+ K++ + LL L R K + A+ F+ K F ++ T
Sbjct: 242 KERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYT 301
Query: 262 IILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEK 321
++LNGWC + N+ EA R W D+I +PD V + + L + K A++LF M K
Sbjct: 302 VLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSK 361
Query: 322 GRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETV 381
G P+V + +I C + + A+E +M + G P+ Y LI K+++TV
Sbjct: 362 GPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTV 421
Query: 382 YEYLDEMEQKNGSCLPNEITFNYLLKSL---KKPEEVPWVLERMERNGCKMSTDTYNVIL 438
YE L EM++K P+ T+N L+K + K PE + +M +N + S T+N+I+
Sbjct: 422 YELLKEMQEKGHP--PDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIM 479
Query: 439 KLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGM 497
K Y + R W+EM KKG+ PD SYTV+I GL +G+ +A Y EM KGM
Sbjct: 480 KSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGM 538
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C8A0|PP275_ARATH Pentatricopeptide repeat-containing protein At3g49730 OS=Arabidopsis thaliana GN=At3g49730 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 206 bits (524), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 127/434 (29%), Positives = 225/434 (51%), Gaps = 12/434 (2%)
Query: 88 DEIAINVQNILKTC--SVSTKGEIEKALNQCELTLTDDLIVNVINRYRFDWEAAYTFFKW 145
DE A V+ I + S ++E ALN+ + L LI+ V++R Y FF W
Sbjct: 61 DEFAGEVEKIYRILRNHHSRVPKLELALNESGIDLRPGLIIRVLSRCGDAGNLGYRFFLW 120
Query: 146 VSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEM----PDLVNEKTYGILLNRYAAA 201
+++ Y V +++ +L + R+F + + +EM P+L+ + + +L+ R+A+A
Sbjct: 121 ATKQPGYFHSYEVCKSMVMILSKMRQFGAVWGLIEEMRKTNPELIEPELFVVLMRRFASA 180
Query: 202 HMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMN 261
+MV++A+ V D ++G D F LL LC+ V+ A FE + +F +++
Sbjct: 181 NMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMREKFPPNLRYFT 240
Query: 262 IILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEK 321
+L GWC G + EAK + ++ EPD V + ++ GK+ A L M ++
Sbjct: 241 SLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKR 300
Query: 322 GRKPDVVTCNCIIDALC-FKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMET 380
G +P+V +I ALC +KR+ EA+ V EM+ GC ++ TY +LI CK ++
Sbjct: 301 GFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDK 360
Query: 381 VYEYLDEMEQKNGSCLPNEITFNYLLKSLKKP---EEVPWVLERMERNGCKMSTDTYNVI 437
Y LD+M +K +P+++T+ ++ + +K EE ++E+M+R GC YNV+
Sbjct: 361 GYSVLDDMRKK--GVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVV 418
Query: 438 LKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGM 497
++L + W EME G+ P ++ +MI+G +G L +A ++F EM +G+
Sbjct: 419 IRLACKLGEVKEAVRLWNEMEANGLSPGVDTFVIMINGFTSQGFLIEACNHFKEMVSRGI 478
Query: 498 VPEPRTGILVNDMN 511
P+ G L + +N
Sbjct: 479 FSAPQYGTLKSLLN 492
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FH87|PP447_ARATH Putative pentatricopeptide repeat-containing protein At5g65820 OS=Arabidopsis thaliana GN=At5g65820 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 199 bits (505), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 131/440 (29%), Positives = 225/440 (51%), Gaps = 13/440 (2%)
Query: 88 DEIAINVQN---ILKTCSVSTKGEIEKALNQCELTLTDDLIVNVINRYRFDWEAAYTFFK 144
DE A +V+ IL+ S ++E ALN+ + L LI V+NR Y FF
Sbjct: 77 DEFASDVEKSYRILRKFH-SRVPKLELALNESGVELRPGLIERVLNRCGDAGNLGYRFFV 135
Query: 145 WVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEM----PDLVNEKTYGILLNRYAA 200
W +++ Y V+ +++ +L + R+F + + +EM P L+ + + +L+ R+A+
Sbjct: 136 WAAKQPRYCHSIEVYKSMVKILSKMRQFGAVWGLIEEMRKENPQLIEPELFVVLVQRFAS 195
Query: 201 AHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTM 260
A MV++AI V D +FG D F LL LC++ V+ A FE + F +++
Sbjct: 196 ADMVKKAIEVLDEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKLFEDMRMRFPVNLRYF 255
Query: 261 NIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWE 320
+L GWC +G + EAK + ++ EPD V Y ++ GK+ A L + M
Sbjct: 256 TSLLYGWCRVGKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMADAYDLLRDMRR 315
Query: 321 KGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMET 380
+G +P+ +I ALC R+ EA++V EM+ C +V TY +L+ CK +++
Sbjct: 316 RGFEPNANCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGFCKWGKIDK 375
Query: 381 VYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMER-NGCKMSTD--TYNVI 437
Y LD+M +K +P+E+T+ +++ + +K E LE ME+ + D YNV+
Sbjct: 376 CYIVLDDMIKKG--LMPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPDIGIYNVV 433
Query: 438 LKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGM 497
++L + W EME+ G+ P ++ +MI+GL +G L +A +F EM +G+
Sbjct: 434 IRLACKLGEVKEAVRLWNEMEENGLSPGVDTFVIMINGLASQGCLLEASDHFKEMVTRGL 493
Query: 498 VPEPRTGILVNDMNIKLKER 517
+ G L +N LK++
Sbjct: 494 FSVSQYGTLKLLLNTVLKDK 513
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WP85|PP150_ARATH Pentatricopeptide repeat-containing protein At2g13420, mitochondrial OS=Arabidopsis thaliana GN=At2g13420 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 195 bits (496), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 130/410 (31%), Positives = 212/410 (51%), Gaps = 18/410 (4%)
Query: 109 IEKALNQCELTLTDDLIVNVINRYRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGR 168
+E +L ++LT +LI + R R + + A +FF+++ S FN I+D+LGR
Sbjct: 58 MESSLQLNGISLTPNLIHQTLLRLRHNSKIALSFFQYLRSLPSPSTTPTSFNLIIDILGR 117
Query: 169 ARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDD--LSAF 226
R+F + Q+ EM D + +T+ IL+ R AA + +A+ FD F E L F
Sbjct: 118 VRQFDVVRQLIVEM-DQTSPETFLILVKRLIAAGLTRQAVRAFDDAPCFLENRRFRLVEF 176
Query: 227 QNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKS 286
LL LC+Y + ++A F K EFG D K I++ GWC L + A++F ++I+S
Sbjct: 177 GFLLDTLCKYGYTKMAVGVFNERKEEFGSDEKVYTILIAGWCKLRRIDMAEKFLVEMIES 236
Query: 287 KCEPDSVTYATFVNALTKKGKLG----------TALRLFQAMWEKGRKPDVVTCNCIIDA 336
EP+ VTY +N + + L A ++F M ++G +PDV + + ++
Sbjct: 237 GIEPNVVTYNVLLNGICRTASLHPEERFERNVRNAEKVFDEMRQRGIEPDVTSFSIVLHM 296
Query: 337 LCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCL 396
+ L+ ++ MK +G P + TY S++K LC R+E E L+ M + S
Sbjct: 297 YSRAHKAELTLDKMKLMKAKGISPTIETYTSVVKCLCSCGRLEEAEELLETMVESGIS-- 354
Query: 397 PNEITFNYLLKSLKKPEEVPWV--LERMERNG-CKMSTDTYNVILKLYVNWDCEDKVRHT 453
P+ T+N K K ++ L R +NG CK ST TYNV+L ++N + V+
Sbjct: 355 PSSATYNCFFKEYKGRKDANGAMNLYRKMKNGLCKPSTQTYNVLLGTFINLGKMETVKEI 414
Query: 454 WEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRT 503
W++++ GPD SYT ++HGL K + ++A YF EM +G +P+ T
Sbjct: 415 WDDLKASETGPDLDSYTSLVHGLCSKEKWKEACGYFVEMIERGFLPQKLT 464
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FVX2|PP129_ARATH Pentatricopeptide repeat-containing protein At1g77360, mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 194 bits (493), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 123/424 (29%), Positives = 225/424 (53%), Gaps = 16/424 (3%)
Query: 89 EIAINVQNILKTCSVSTKGEIEKALNQCELTLTDDLIVNVINRYRFDWEAAYTFFKWVSR 148
++A +NI K S + ++ AL+Q L ++ +++ +V+NR+R Y FF+W +
Sbjct: 67 DVADVAKNISKVLMSSPQLVLDSALDQSGLRVSQEVVEDVLNRFRNAGLLTYRFFQWSEK 126
Query: 149 EGDYSPGSNVFNAILDVLGRARRFVELIQVFDEM--PDLVNEKTYGILLNRYAAAHMVEE 206
+ Y ++ +++ + R++ + + + M ++N +T+ I++ +YA A V+E
Sbjct: 127 QRHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMRKKKMLNVETFCIVMRKYARAQKVDE 186
Query: 207 AIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNG 266
AI F+ +++ +L AF LL LC+ K+V A+ FE+ ++ F D KT +I+L G
Sbjct: 187 AIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEVFENMRDRFTPDSKTYSILLEG 246
Query: 267 WCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPD 326
W N+ +A+ ++++I + C PD VTY+ V+ L K G++ AL + ++M KP
Sbjct: 247 WGKEPNLPKAREVFREMIDAGCHPDIVTYSIMVDILCKAGRVDEALGIVRSMDPSICKPT 306
Query: 327 VVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLD 386
+ ++ + R+ EA++ EM+ G +V +NSLI CK RM+ VY L
Sbjct: 307 TFIYSVLVHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCKANRMKNVYRVLK 366
Query: 387 EMEQKNGSCLPNEITFNYLLKSL---KKPEEVPWVLERMERNGCKMSTDTYNVILKLYVN 443
EM+ K + PN + N +L+ L + +E V +M + C+ DTY +++K++
Sbjct: 367 EMKSKGVT--PNSKSCNIILRHLIERGEKDEAFDVFRKMIK-VCEPDADTYTMVIKMF-- 421
Query: 444 WDCEDKVRHT----WEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVP 499
CE K T W+ M KKG+ P +++V+I+GL ++ + A EM G+ P
Sbjct: 422 --CEKKEMETADKVWKYMRKKGVFPSMHTFSVLINGLCEERTTQKACVLLEEMIEMGIRP 479
Query: 500 EPRT 503
T
Sbjct: 480 SGVT 483
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 536 | ||||||
| 225461528 | 546 | PREDICTED: putative pentatricopeptide re | 0.942 | 0.924 | 0.610 | 1e-179 | |
| 147793827 | 546 | hypothetical protein VITISV_022418 [Viti | 0.947 | 0.930 | 0.614 | 1e-179 | |
| 255582957 | 507 | pentatricopeptide repeat-containing prot | 0.891 | 0.942 | 0.610 | 1e-170 | |
| 224117122 | 433 | predicted protein [Populus trichocarpa] | 0.759 | 0.939 | 0.665 | 1e-162 | |
| 449444202 | 532 | PREDICTED: putative pentatricopeptide re | 0.945 | 0.953 | 0.552 | 1e-162 | |
| 302142966 | 509 | unnamed protein product [Vitis vinifera] | 0.871 | 0.917 | 0.562 | 1e-158 | |
| 297834384 | 517 | pentatricopeptide repeat-containing prot | 0.873 | 0.905 | 0.559 | 1e-155 | |
| 15232517 | 523 | pentatricopeptide repeat-containing prot | 0.893 | 0.915 | 0.548 | 1e-153 | |
| 356546852 | 481 | PREDICTED: putative pentatricopeptide re | 0.852 | 0.950 | 0.560 | 1e-146 | |
| 357450985 | 497 | Pentatricopeptide repeat-containing prot | 0.895 | 0.965 | 0.478 | 1e-130 |
| >gi|225461528|ref|XP_002282646.1| PREDICTED: putative pentatricopeptide repeat-containing protein At3g15200-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 635 bits (1639), Expect = e-179, Method: Compositional matrix adjust.
Identities = 323/529 (61%), Positives = 386/529 (72%), Gaps = 24/529 (4%)
Query: 1 MRSRFRQLKRIYREHFQQKFKFHSQLTTQFSKLQSCNSVTSHKTLIPII------NLQAR 54
M SRF+ LK R + Q KFKF + TQ + H L II + Q
Sbjct: 1 MHSRFQMLKLYSRVNTQLKFKF--EFLTQPRR--------KHPILPHIIPNQHFHSTQNP 50
Query: 55 NSEFLFLGRIETAQLVHSLANSDEKSEFQRYPGDEIAINVQNILKTCSVSTKGEIEKALN 114
NSEF F E + V +A+ ++ F+R P E A+ VQN+LKT S+ EIE AL+
Sbjct: 51 NSEFNFREGFERDEFVGLVADPGKREVFRRDPDGETALEVQNLLKTYRDSSVSEIEGALH 110
Query: 115 QCELTLTDDLIVNVINRYRFDWEAAYTFFKWVSR---EGDYSPGSNVFNAILDVLGRARR 171
QC L+LTDDL+++V+ R+R DW AY FF W SR E YSPG V N ILD+LGR RR
Sbjct: 111 QCRLSLTDDLVLDVLKRHRSDWRPAYVFFNWASRCGIESGYSPGCGVHNEILDILGRMRR 170
Query: 172 FVELIQVFDEMP---DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQN 228
F E+ Q+FDEM LVNE+T+G+LLNRYAAAH EEA+ +F++RK G DL AFQ
Sbjct: 171 FHEMTQLFDEMSKRKGLVNERTFGVLLNRYAAAHKTEEAVKIFNKRKGLGFELDLIAFQT 230
Query: 229 LLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKC 288
LL+ LCRYKHVE+AE F S+KNEF DIK+MN+ILNGWCVLG++ EAKRFW DII SKC
Sbjct: 231 LLMSLCRYKHVEMAEFLFHSKKNEFPPDIKSMNVILNGWCVLGSLREAKRFWNDIITSKC 290
Query: 289 EPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALE 348
+PD TY F+N+LTK GKL TA++LFQAMWEKG PDV CNCIIDALCFKKRIPEALE
Sbjct: 291 KPDKFTYGIFINSLTKAGKLSTAVKLFQAMWEKGCNPDVAICNCIIDALCFKKRIPEALE 350
Query: 349 VLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKS 408
VLREM R C P+V TYNSLIKHLCKI+R E VYE LD+MEQK CLPN T+ YLLKS
Sbjct: 351 VLREMNERDCQPDVATYNSLIKHLCKIQRFEKVYELLDDMEQK--GCLPNARTYGYLLKS 408
Query: 409 LKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRS 468
KKPEEVP +LERMERNGC+M++D YN+ILKLY++W E K+R T +EME+ GMGPDQR+
Sbjct: 409 TKKPEEVPGILERMERNGCRMNSDCYNLILKLYMDWGYELKLRSTLDEMERNGMGPDQRT 468
Query: 469 YTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRTGILVNDMNIKLKER 517
YT+MIHGLYDKGR++DALSYF +M L GMVPEPRT +LVN MNIKLKER
Sbjct: 469 YTIMIHGLYDKGRMDDALSYFKQMTLMGMVPEPRTTLLVNAMNIKLKER 517
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147793827|emb|CAN62355.1| hypothetical protein VITISV_022418 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 633 bits (1633), Expect = e-179, Method: Compositional matrix adjust.
Identities = 323/526 (61%), Positives = 387/526 (73%), Gaps = 18/526 (3%)
Query: 1 MRSRFRQLKRIYREHFQQKFKFHSQLTTQFSKLQSCNSVTSHKTLIP---IINLQARNSE 57
M SRF+ LK R + Q KFKF + TQ + +S+ H LIP + Q NSE
Sbjct: 1 MHSRFQMLKLHSRVNTQLKFKF--EFLTQPRRK---HSILPH--LIPNQHFHSTQNPNSE 53
Query: 58 FLFLGRIETAQLVHSLANSDEKSEFQRYPGDEIAINVQNILKTCSVSTKGEIEKALNQCE 117
F F E + V +A+ ++ F+R P E A+ VQN+LKT S+ EIE AL+QC
Sbjct: 54 FNFREGFERDEFVGLVADPGKREVFRRDPDGETALEVQNLLKTYRDSSVSEIEGALHQCR 113
Query: 118 LTLTDDLIVNVINRYRFDWEAAYTFFKWVSR---EGDYSPGSNVFNAILDVLGRARRFVE 174
L+LTDDL+++V+ R+R DW AY FF W SR E YSPG V N ILD+LGR RRF E
Sbjct: 114 LSLTDDLVLDVLKRHRSDWRPAYVFFNWASRCGXESGYSPGCGVHNEILDILGRMRRFHE 173
Query: 175 LIQVFDEMP---DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLL 231
+ Q+FDEM L NE+T+G+LLNRYAAAH EEA+ +F +RK G DL AFQ LL+
Sbjct: 174 MTQLFDEMSKRKGLXNERTFGVLLNRYAAAHKTEEAVKIFYKRKGLGFELDLIAFQTLLM 233
Query: 232 WLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPD 291
LCRYKHVE+AE F S+KNEF DIK+MN+ILNGWCVLG++ EAKRFW DII SKC+PD
Sbjct: 234 SLCRYKHVEMAEFLFHSKKNEFPPDIKSMNVILNGWCVLGSLREAKRFWNDIITSKCKPD 293
Query: 292 SVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLR 351
TY F+N+LTK GKL TA++LFQAMWEKG PDV CNCIIDALCFKKRIPEALEVLR
Sbjct: 294 KFTYGIFINSLTKAGKLSTAVKLFQAMWEKGCNPDVAICNCIIDALCFKKRIPEALEVLR 353
Query: 352 EMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKK 411
EM R C P+V TYNSLIKHLCKI+R E VYE LD+MEQK CLPN T+ YLLKS KK
Sbjct: 354 EMNERDCQPDVATYNSLIKHLCKIQRFEKVYELLDDMEQK--GCLPNARTYGYLLKSTKK 411
Query: 412 PEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTV 471
PEEVP +LERMERNGC+M++D YN+ILKLY++W E K+R T +EME+ GMGPDQR+YT+
Sbjct: 412 PEEVPGILERMERNGCRMNSDCYNLILKLYMDWGYELKLRSTLDEMERNGMGPDQRTYTI 471
Query: 472 MIHGLYDKGRLEDALSYFHEMRLKGMVPEPRTGILVNDMNIKLKER 517
MIHGLYDKGR++DALSYF +M L GMVPEPRT +LVN MNIKLKER
Sbjct: 472 MIHGLYDKGRMDDALSYFKQMTLMGMVPEPRTTLLVNAMNIKLKER 517
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255582957|ref|XP_002532249.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223528067|gb|EEF30143.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 605 bits (1561), Expect = e-170, Method: Compositional matrix adjust.
Identities = 296/485 (61%), Positives = 365/485 (75%), Gaps = 7/485 (1%)
Query: 46 IPIINLQARN---SEFLFLGRIETAQLVHSLANSDEKSEFQRYPGDEIAINVQNILKTCS 102
+P+I+ Q R+ +F + + A S EFQ+ P E+A+ VQN+LK
Sbjct: 1 MPLISQQLRSISRKDFCWRSKFYFPTKSLEFAKSHSLIEFQQEPPGELALKVQNVLKNYR 60
Query: 103 VSTKGEIEKALNQCELTLTDDLIVNVINRYRFDWEAAYTFFKWVSREGDYSPGSNVFNAI 162
S +IE AL QC T+T+DLI+ V+ R+R DW+ A FF WVS+ G GS +N I
Sbjct: 61 DSPTRKIELALTQCNPTVTEDLILKVLKRHRSDWKPALIFFNWVSKGGKVLMGSGAYNEI 120
Query: 163 LDVLGRARRFVELIQVFDEMP---DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGE 219
LD+LG+ RRF EL QV D M LVNE+TY +L+NRYAAAH VEEAI +F+ R++ G
Sbjct: 121 LDILGKMRRFDELSQVLDIMSKREGLVNEETYRVLVNRYAAAHKVEEAIEIFNTRRDIGL 180
Query: 220 LDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRF 279
DL +FQNLL++LCRYKHV++AE+ S+ +FG DIKTMNI+LNGWCVLGNV+EAKRF
Sbjct: 181 EIDLVSFQNLLMFLCRYKHVQIAESLLYSKGKDFGMDIKTMNIVLNGWCVLGNVHEAKRF 240
Query: 280 WKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCF 339
WKDII SKC+PD TY TF+ ALTKKGKLGTAL++++AMWEK KPDVV CNCIIDALCF
Sbjct: 241 WKDIIGSKCKPDLFTYGTFIKALTKKGKLGTALKIYRAMWEKQCKPDVVICNCIIDALCF 300
Query: 340 KKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNE 399
K R+PEALEV REM +GCLPN TYNSLIKH +I+RME VYE LDEM K GSC+P+
Sbjct: 301 KNRVPEALEVFREMSQQGCLPNGATYNSLIKHFSRIRRMEKVYELLDEMLDKKGSCMPDH 360
Query: 400 ITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEK 459
ITFNYLLK+LKKPEE+P VLERMERNGC +STDTYN+IL+LY +WDCE++V TW EMEK
Sbjct: 361 ITFNYLLKALKKPEELPLVLERMERNGCMISTDTYNLILRLYADWDCEERVGDTWNEMEK 420
Query: 460 KGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRTGILVNDMNIKLKER-G 518
G+GPD+RSYT+MIH LY+KGR+ DAL YF EM KGMV EPRT +LV+ MN+KLK+
Sbjct: 421 LGLGPDRRSYTIMIHWLYEKGRINDALHYFGEMTSKGMVSEPRTEMLVSSMNMKLKDNDA 480
Query: 519 EQGKK 523
EQG+K
Sbjct: 481 EQGEK 485
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224117122|ref|XP_002317482.1| predicted protein [Populus trichocarpa] gi|222860547|gb|EEE98094.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 578 bits (1491), Expect = e-162, Method: Compositional matrix adjust.
Identities = 273/410 (66%), Positives = 327/410 (79%), Gaps = 3/410 (0%)
Query: 120 LTDDLIVNVINRYRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVF 179
+T DL++ V+ R+R DW+ AY FF WVS+EG S S V+N ILD+LGR RRF EL V
Sbjct: 1 MTQDLVLKVLKRHRSDWKPAYIFFNWVSKEGTISLSSCVYNEILDILGRMRRFEELTLVL 60
Query: 180 DEMP---DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRY 236
DEM V+E TY +L+NRYA AHMVEEAIG F++R+E G DL +FQ LL++LCRY
Sbjct: 61 DEMSKREGFVDEDTYRVLVNRYAGAHMVEEAIGAFNKRRELGLELDLVSFQKLLMYLCRY 120
Query: 237 KHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYA 296
KHV+VAET S+ +EFG DIKTMNI+LNGWCVLGNV EAKRFWKDII SKC+PD TY
Sbjct: 121 KHVDVAETLLHSKGHEFGVDIKTMNIVLNGWCVLGNVREAKRFWKDIIASKCKPDVFTYG 180
Query: 297 TFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNR 356
TF+ ALT KGKLGTA++L++AMW+ KPDVV CNC+IDALCFKKR+PEAL V MK R
Sbjct: 181 TFIKALTNKGKLGTAMKLYEAMWKMQCKPDVVICNCVIDALCFKKRVPEALAVFEGMKER 240
Query: 357 GCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVP 416
GC+PNV TYNSLIKH+CKI RME VYE LDEM++K GSC+P+EITFNYLLKSLKKPEEV
Sbjct: 241 GCIPNVATYNSLIKHMCKIGRMEKVYELLDEMQEKKGSCMPDEITFNYLLKSLKKPEEVA 300
Query: 417 WVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGL 476
VLERM+ NGCKM+ DT N++LKL+ +WD E+KVR+TWEEMEK G+G D+RSYT+MIH L
Sbjct: 301 GVLERMKINGCKMNNDTCNLLLKLHADWDSEEKVRYTWEEMEKNGLGLDRRSYTIMIHWL 360
Query: 477 YDKGRLEDALSYFHEMRLKGMVPEPRTGILVNDMNIKLKERGEQGKKVIK 526
YDKGR+EDAL YF EM KGMVPEPRT IL N MN + ++ E+G+K K
Sbjct: 361 YDKGRVEDALRYFGEMENKGMVPEPRTKILCNSMNTRKQKEAEEGEKSAK 410
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449444202|ref|XP_004139864.1| PREDICTED: putative pentatricopeptide repeat-containing protein At3g15200-like [Cucumis sativus] gi|449502917|ref|XP_004161779.1| PREDICTED: putative pentatricopeptide repeat-containing protein At3g15200-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 578 bits (1489), Expect = e-162, Method: Compositional matrix adjust.
Identities = 291/527 (55%), Positives = 380/527 (72%), Gaps = 20/527 (3%)
Query: 1 MRSRFRQLKRIYREHFQQ--KFKFHSQLTTQFSKLQSCNSVTSHKTLI----PIINLQAR 54
M+ +F +L+ I E F KF+F S L +F + TSH+ PI ++ +
Sbjct: 1 MKFKFLRLRNISAEDFHGNFKFRFQSNLVKRFLP----HIPTSHRPFSVVSDPIHHILSC 56
Query: 55 NSEFLFLGRIETAQLVH-SLANSDEKSEFQRYPGDEIAINVQNILKTCSVSTKGEIEKAL 113
++ LV S+A SDE +P D A+ VQN+L +IE+AL
Sbjct: 57 HNLTPSPRNCHDRTLVSDSIAVSDEP--ITVHPDDPSAVYVQNVLYFRRHKPVEDIERAL 114
Query: 114 NQCELTLTDDLIVNVINRYRFDWEAAYTFFKWVSREG----DYSPGSNVFNAILDVLGRA 169
+ C+L LTDD ++ V+ R+R DW A+ FF WV + G ++PGS ++N IL +LG+
Sbjct: 115 SLCDLVLTDDFVLKVLRRHRSDWNPAFIFFNWVLKRGTNEEKFTPGSVIYNEILVILGKF 174
Query: 170 RRFVELIQVFDEMP---DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAF 226
RRF E+ +V EM +LVNE+TY +LLNRYAAAH VEEAI +F RR+EFG +L AF
Sbjct: 175 RRFEEVDKVLVEMSKRKELVNEETYSVLLNRYAAAHKVEEAISIFYRRQEFGLEMNLIAF 234
Query: 227 QNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKS 286
Q+LL+WLCRYKHVE AET F S+K+EF DIKT NIILNGWCVLGNV+EAKRFW++II+S
Sbjct: 235 QSLLMWLCRYKHVEAAETLFHSKKHEFVTDIKTSNIILNGWCVLGNVHEAKRFWREIIES 294
Query: 287 KCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEA 346
KCEPD TY T +N+LTKKGKLGTAL+LF+AMWE+G DVV CNCIIDALCFKKRIPEA
Sbjct: 295 KCEPDIYTYGTLINSLTKKGKLGTALKLFRAMWERGLTTDVVICNCIIDALCFKKRIPEA 354
Query: 347 LEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLL 406
LE+ +EM RGC NV TYN+LIKHLCKI+RME V E L+EME++ GSC PN +TF YLL
Sbjct: 355 LEIFKEMNERGCAANVATYNTLIKHLCKIRRMEKVNELLNEMEERKGSCWPNSVTFIYLL 414
Query: 407 KSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQ 466
S++ PEEVP + +RMER+GCKM++D YN+IL+LY++WD +++V+ TW EM++ G+GPD+
Sbjct: 415 GSVRGPEEVPVLFQRMERSGCKMTSDIYNLILRLYMDWDIQERVKSTWNEMKEMGLGPDR 474
Query: 467 RSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRTGILVNDMNIK 513
RSYT+MIHGLY+KGR +D L YF+EM LKG++PEP+T LVN N+K
Sbjct: 475 RSYTIMIHGLYEKGRTKDGLRYFNEMTLKGIMPEPKTEKLVNATNVK 521
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302142966|emb|CBI20261.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 563 bits (1452), Expect = e-158, Method: Compositional matrix adjust.
Identities = 298/530 (56%), Positives = 358/530 (67%), Gaps = 63/530 (11%)
Query: 1 MRSRFRQLKRIYREHFQQKFKFHSQLTTQFSKLQSCNSVTSHKTLIPII------NLQAR 54
M SRF+ LK R + Q KFKF + TQ + H L II + Q
Sbjct: 1 MHSRFQMLKLYSRVNTQLKFKF--EFLTQPRR--------KHPILPHIIPNQHFHSTQNP 50
Query: 55 NSEFLFLGRIETAQLVHSLANSDEKSEFQRYPGDEIAINVQNILKTCSVSTKGEIEKALN 114
NSEF F E + V +A+ ++ F+R P E A+ VQN+LKT S+ EIE AL+
Sbjct: 51 NSEFNFREGFERDEFVGLVADPGKREVFRRDPDGETALEVQNLLKTYRDSSVSEIEGALH 110
Query: 115 QCELTLTDDLIVNVINRYRFDWEAAYTFFKWVSR---EGDYSPGSNVFNAILDVLGRARR 171
QC L+LTDDL+++V+ R+R DW AY FF W SR E YSPG V N ILD+LGR RR
Sbjct: 111 QCRLSLTDDLVLDVLKRHRSDWRPAYVFFNWASRCGIESGYSPGCGVHNEILDILGRMRR 170
Query: 172 FVELIQVFDEMP---DLVNEKTYGILLNRYAAAHMVEEA-IGVFDRRKEFGELDDLSAFQ 227
F E+ Q+FDEM LVNE+T+G+LLNRYAAAH EEA + +F +RK
Sbjct: 171 FHEMTQLFDEMSKRKGLVNERTFGVLLNRYAAAHKTEEAAVKIFYKRK------------ 218
Query: 228 NLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSK 287
G I++MN+ILNGWCVLG++ EAKRFW DII SK
Sbjct: 219 --------------------------GAWIRSMNVILNGWCVLGSLREAKRFWNDIITSK 252
Query: 288 CEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEAL 347
C+PD TY F+N+LTK GKL TA++LFQAMWEKG PDV CNCIIDALCFKKRIPEAL
Sbjct: 253 CKPDKFTYGIFINSLTKAGKLSTAVKLFQAMWEKGCNPDVAICNCIIDALCFKKRIPEAL 312
Query: 348 EVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLK 407
EVLREM R C P+V TYNSLIKHLCKI+R E VYE LD+MEQK CLPN T+ YLLK
Sbjct: 313 EVLREMNERDCQPDVATYNSLIKHLCKIQRFEKVYELLDDMEQK--GCLPNARTYGYLLK 370
Query: 408 SLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQR 467
S KKPEEVP +LERMERNGC+M++D YN+ILKLY++W E K+R T +EME+ GMGPDQR
Sbjct: 371 STKKPEEVPGILERMERNGCRMNSDCYNLILKLYMDWGYELKLRSTLDEMERNGMGPDQR 430
Query: 468 SYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRTGILVNDMNIKLKER 517
+YT+MIHGLYDKGR++DALSYF +M L GMVPEPRT +LVN MNIKLKER
Sbjct: 431 TYTIMIHGLYDKGRMDDALSYFKQMTLMGMVPEPRTTLLVNAMNIKLKER 480
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297834384|ref|XP_002885074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297330914|gb|EFH61333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 555 bits (1431), Expect = e-155, Method: Compositional matrix adjust.
Identities = 272/486 (55%), Positives = 347/486 (71%), Gaps = 18/486 (3%)
Query: 33 LQSCNSVTSHKTLIPIINLQARNSEFLFLGRIETAQLVHSLANSDEKSEFQRYPG--DEI 90
L SV +HK I + S F LG + +HSLA D ++P ++
Sbjct: 25 LVDLRSVPNHKNNITL-------SRFHLLGINQATHFLHSLAAPD------KFPNGFNQS 71
Query: 91 AINVQNILKTCSVSTKGEIEKALNQCELTLTDDLIVNVINRYRFDWEAAYTFFKWVSREG 150
A++V NI+K S+ EIE+ L++C + LT++L+ V+NR R DW+ AY + + +
Sbjct: 72 AVDVHNIIKHHRGSSPEEIERILDKCGIQLTEELVFEVVNRNRSDWKPAYILSRLIVKHS 131
Query: 151 DYSPGSNVFNAILDVLGRARRFVELIQVFDEMP---DLVNEKTYGILLNRYAAAHMVEEA 207
Y S V+N ILDVLG+ RRF E QV DEM V+EKTY +LLNRYAAAH V+EA
Sbjct: 132 VYISSSLVYNEILDVLGKMRRFEEFHQVVDEMSKRDGFVDEKTYEVLLNRYAAAHKVDEA 191
Query: 208 IGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGW 267
+GVF+RR+EFG DDL AF LL+WLCRYKHVE AET F S + EFG DI+TMNIILNGW
Sbjct: 192 VGVFERRREFGIEDDLVAFHGLLMWLCRYKHVEFAETLFCSRRREFGCDIRTMNIILNGW 251
Query: 268 CVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDV 327
CVLGNV+EAKR WKDII SKC+PD V+Y T +NALTKKGKLG A+ L++A+WE GR PDV
Sbjct: 252 CVLGNVHEAKRIWKDIIASKCKPDVVSYGTMINALTKKGKLGKAMELYRALWETGRNPDV 311
Query: 328 VTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDE 387
CN +IDALCFKKRIPEALEV +EM +G PNV TYNSL+KHLCKI+R E V+E ++E
Sbjct: 312 KICNNVIDALCFKKRIPEALEVFKEMSEKGPSPNVVTYNSLLKHLCKIRRTEKVWELVEE 371
Query: 388 MEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCE 447
ME K GSC PN++TF YLLK ++ ++V VLERM +N C+M++D YN++ +LYV WD E
Sbjct: 372 MEHKGGSCSPNDVTFGYLLKYSQRSKDVDAVLERMAKNKCEMTSDLYNLMFRLYVQWDNE 431
Query: 448 DKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRTGILV 507
+KVR W EME+ G+GPDQR+YT+ IHGL+ KG++ +ALSYF EM KGMVPEPRT +L+
Sbjct: 432 EKVREIWGEMERSGLGPDQRTYTIRIHGLHTKGKIGEALSYFQEMMSKGMVPEPRTEMLL 491
Query: 508 NDMNIK 513
N K
Sbjct: 492 NQNKTK 497
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15232517|ref|NP_188138.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75273407|sp|Q9LIL5.1|PP233_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At3g15200 gi|11994509|dbj|BAB02574.1| unnamed protein product [Arabidopsis thaliana] gi|332642110|gb|AEE75631.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust.
Identities = 270/492 (54%), Positives = 352/492 (71%), Gaps = 13/492 (2%)
Query: 25 QLTTQFSKLQSCNSVTSHKTLIPIINLQARN----SEFLFLGRIETAQLVHSLANSDE-K 79
QL + S+ + +S+ + + P +N S F FLG +HSL D+
Sbjct: 12 QLQSALSR-RRISSLVDFRRVFPPETPNHKNNITLSRFHFLG----THFLHSLGAPDKFP 66
Query: 80 SEFQRYPGDEIAINVQNILKTCSVSTKGEIEKALNQCELTLTDDLIVNVINRYRFDWEAA 139
+ F + A++V NI+K S+ +I++ L++C + LT++L++ V+NR R DW+ A
Sbjct: 67 NRFNDDKDKQSALDVHNIIKHHRGSSPEKIKRILDKCGIDLTEELVLEVVNRNRSDWKPA 126
Query: 140 YTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMPD---LVNEKTYGILLN 196
Y + V ++ + S ++N ILDVLG+ RRF E QVFDEM VNEKTY +LLN
Sbjct: 127 YILSQLVVKQSVHLSSSMLYNEILDVLGKMRRFEEFHQVFDEMSKRDGFVNEKTYEVLLN 186
Query: 197 RYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYD 256
RYAAAH V+EA+GVF+RRKEFG DDL AF LL+WLCRYKHVE AET F S + EFG D
Sbjct: 187 RYAAAHKVDEAVGVFERRKEFGIDDDLVAFHGLLMWLCRYKHVEFAETLFCSRRREFGCD 246
Query: 257 IKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQ 316
IK MN+ILNGWCVLGNV+EAKRFWKDII SKC PD V+Y T +NALTKKGKLG A+ L++
Sbjct: 247 IKAMNMILNGWCVLGNVHEAKRFWKDIIASKCRPDVVSYGTMINALTKKGKLGKAMELYR 306
Query: 317 AMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIK 376
AMW+ R PDV CN +IDALCFKKRIPEALEV RE+ +G PNV TYNSL+KHLCKI+
Sbjct: 307 AMWDTRRNPDVKICNNVIDALCFKKRIPEALEVFREISEKGPDPNVVTYNSLLKHLCKIR 366
Query: 377 RMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNV 436
R E V+E ++EME K GSC PN++TF+YLLK ++ ++V VLERM +N C+M++D YN+
Sbjct: 367 RTEKVWELVEEMELKGGSCSPNDVTFSYLLKYSQRSKDVDIVLERMAKNKCEMTSDLYNL 426
Query: 437 ILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKG 496
+ +LYV WD E+KVR W EME+ G+GPDQR+YT+ IHGL+ KG++ +ALSYF EM KG
Sbjct: 427 MFRLYVQWDKEEKVREIWSEMERSGLGPDQRTYTIRIHGLHTKGKIGEALSYFQEMMSKG 486
Query: 497 MVPEPRTGILVN 508
MVPEPRT +L+N
Sbjct: 487 MVPEPRTEMLLN 498
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356546852|ref|XP_003541836.1| PREDICTED: putative pentatricopeptide repeat-containing protein At3g15200-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust.
Identities = 259/462 (56%), Positives = 331/462 (71%), Gaps = 5/462 (1%)
Query: 68 QLVHSLANSDEKSEFQRYPGDEIAINVQNILKTCSVSTKGEIEKALNQCELTLTDDLIVN 127
Q + +++ K+ R+ A +QN+LK ++ +AL+QC L DL+++
Sbjct: 13 QGIFQTFSNNVKTSTPRFVHSCPATFIQNLLKFRRDKPTEQLYRALDQCGFDLNHDLVLD 72
Query: 128 VINRYRFDWEAAYTFFKWVSREG-DYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--- 183
V+ R+R DW A+ FF W S+ Y P S+V N I+D+LG+ +RF EL QV DEM
Sbjct: 73 VLRRHRSDWRPAHVFFNWASKTTTGYQPSSDVCNEIVDILGKMQRFQELHQVLDEMSKRE 132
Query: 184 DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAE 243
+L++E + L+ R+ AH V+EAI +F RRKEFG + AF+ LL+WLCRYKHVE AE
Sbjct: 133 ELLDEAVFATLVRRFVGAHKVDEAIQLFYRRKEFGLELNSEAFRTLLMWLCRYKHVEDAE 192
Query: 244 TFFE-SEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNAL 302
F S K DIK N+ILNGWCVLGN +EAKR W+DI+ S C+PD TYATF+ AL
Sbjct: 193 ALFHNSVKKGLRADIKMWNVILNGWCVLGNSHEAKRVWRDIVASPCKPDIFTYATFIKAL 252
Query: 303 TKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNV 362
TKKGKLGTAL+LF+ MW+KG KPDVV CNCIIDALCFKKRIPEALE+ +M RGC PNV
Sbjct: 253 TKKGKLGTALKLFRGMWDKGGKPDVVICNCIIDALCFKKRIPEALEIFCDMSERGCEPNV 312
Query: 363 TTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERM 422
TYNSLIK++CKI+RM+ VYE +DEME+K GSCLPN +T+ YLLKSLK+P EV VLERM
Sbjct: 313 ATYNSLIKYMCKIQRMKKVYELVDEMERKKGSCLPNAVTYCYLLKSLKEPGEVCRVLERM 372
Query: 423 ERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRL 482
ERNGC M+ D YN++L+LY+ WD D VR TWEEME+ G GPD+RSYT+MIH ++KGR+
Sbjct: 373 ERNGCGMNDDVYNMVLRLYMKWDDGDGVRKTWEEMERNGWGPDRRSYTIMIHENFEKGRV 432
Query: 483 EDALSYFHEMRLKGMVPEPRTGILVNDMNIKLKERGEQGKKV 524
+DA+ Y EM KGMVPE RT LV+ MNI+LK R E+ + V
Sbjct: 433 KDAVRYLEEMISKGMVPERRTEKLVSSMNIRLKGRSEKQEDV 474
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357450985|ref|XP_003595769.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355484817|gb|AES66020.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 473 bits (1216), Expect = e-130, Method: Compositional matrix adjust.
Identities = 252/527 (47%), Positives = 337/527 (63%), Gaps = 47/527 (8%)
Query: 7 QLKRIYREHFQQKFKFHSQLTTQFSKLQSCNSVTSHKTLIPIINLQARNSEFLFLGRIET 66
Q K ++H K F + T L + TS T RNS +
Sbjct: 2 QTKSNLQQHASNKNTFMQKQQTNSHNLVQQSPNTSEPTFPSSFPQNPRNS---------S 52
Query: 67 AQLVHSLANSDEKSEFQRYPGDEIAINVQNILKTCSVSTKGEIEKALNQCELTLTDDLIV 126
++ +HS +S + F +QN+LK +IE+ALN + ++L++
Sbjct: 53 SRFLHSHHDSPPLASF-----------IQNLLKFRRDKPTEQIEQALNLIGIHPNNNLVL 101
Query: 127 NVINRYRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--- 183
V+ R+R DW+ A+ FFKWVS+ +Y+P V+N I+++LG+ + F EL QV DEM
Sbjct: 102 QVLQRHRSDWKPAFIFFKWVSKTNNYTPSCEVYNEIINILGKMKCFEELHQVLDEMSQRK 161
Query: 184 DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFG---ELDDLSAFQNLLLWLCRYKHVE 240
+ +NE+T+ IL+ R+ AAH +EEAI +F RR+EFG ELD AF+ LL+W+CRYKH+E
Sbjct: 162 EFINEETFCILIRRFVAAHKLEEAINIFYRREEFGLDNELDS-KAFRTLLMWMCRYKHIE 220
Query: 241 VAETFFESEKNEFGY--DIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATF 298
AET F N+F + DIKT N+ILNGWCVLGN +EAKR WKDII KC+
Sbjct: 221 EAETLFHRNLNKFRFCRDIKTWNVILNGWCVLGNTHEAKRLWKDIIAYKCK--------- 271
Query: 299 VNALTKKGKLGTALRLFQ-AMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRG 357
++G + Q + E+ KPDVV NC+ID LCFKKRIPEAL+V +MK R
Sbjct: 272 --------EIGNCFEVVQWDVEEESCKPDVVIFNCLIDGLCFKKRIPEALQVFHDMKERD 323
Query: 358 CLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPW 417
CLPNV TYNSLIKHL KI+RME VYE +++ME+++G CLPN +T++YLL+SLK PEEVP
Sbjct: 324 CLPNVATYNSLIKHLFKIRRMEKVYELVEDMERRSGDCLPNGVTYSYLLQSLKAPEEVPA 383
Query: 418 VLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLY 477
VLERMERNGC MS D N+IL+LY+ WD D +R TW+EME+ G+GPD+RSYT+MIHG Y
Sbjct: 384 VLERMERNGCAMSDDICNLILRLYMKWDDLDGLRKTWDEMERNGLGPDRRSYTIMIHGHY 443
Query: 478 DKGRLEDALSYFHEMRLKGMVPEPRTGILVNDMNIKLKERGEQGKKV 524
+ GR +DA+ YF EM KG+V EPRT LV MN +LKER E+ + V
Sbjct: 444 ENGRTKDAMRYFQEMTSKGIVLEPRTEKLVISMNGQLKERTEKQEGV 490
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 536 | ||||||
| TAIR|locus:2083671 | 523 | AT3G15200 [Arabidopsis thalian | 0.944 | 0.967 | 0.535 | 2.3e-142 | |
| TAIR|locus:2198908 | 448 | AT1G80550 [Arabidopsis thalian | 0.716 | 0.857 | 0.334 | 4.6e-57 | |
| TAIR|locus:2096099 | 599 | AT3G62470 "AT3G62470" [Arabido | 0.759 | 0.679 | 0.315 | 4.8e-55 | |
| TAIR|locus:2096074 | 599 | AT3G62540 "AT3G62540" [Arabido | 0.759 | 0.679 | 0.312 | 2.6e-54 | |
| TAIR|locus:2185455 | 598 | AT5G14820 "AT5G14820" [Arabido | 0.759 | 0.680 | 0.312 | 3.4e-54 | |
| TAIR|locus:2097395 | 638 | AT3G49730 [Arabidopsis thalian | 0.809 | 0.680 | 0.293 | 4e-51 | |
| TAIR|locus:2156213 | 637 | AT5G65820 [Arabidopsis thalian | 0.837 | 0.704 | 0.299 | 2.8e-50 | |
| TAIR|locus:2035206 | 523 | AT1G52640 [Arabidopsis thalian | 0.772 | 0.791 | 0.299 | 1.6e-47 | |
| TAIR|locus:2026346 | 510 | AT1G71060 [Arabidopsis thalian | 0.860 | 0.903 | 0.272 | 6.9e-47 | |
| TAIR|locus:2094394 | 562 | AT3G22670 [Arabidopsis thalian | 0.824 | 0.786 | 0.284 | 3.4e-45 |
| TAIR|locus:2083671 AT3G15200 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1392 (495.1 bits), Expect = 2.3e-142, P = 2.3e-142
Identities = 279/521 (53%), Positives = 363/521 (69%)
Query: 17 QQKFKFHSQLTTQFSKLQSCNSVTSHKTLIPIINLQARN----SEFLFLGRIETAQLVHS 72
+ K + QL + S+ + +S+ + + P +N S F FLG +HS
Sbjct: 4 KNKIEILFQLQSALSR-RRISSLVDFRRVFPPETPNHKNNITLSRFHFLG----THFLHS 58
Query: 73 LANSDE-KSEFQRYPGDEIAINVQNILKTCSVSTKGEIEKALNQCELTLTDDLIVNVINR 131
L D+ + F + A++V NI+K S+ +I++ L++C + LT++L++ V+NR
Sbjct: 59 LGAPDKFPNRFNDDKDKQSALDVHNIIKHHRGSSPEKIKRILDKCGIDLTEELVLEVVNR 118
Query: 132 YRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMPD---LVNE 188
R DW+ AY + V ++ + S ++N ILDVLG+ RRF E QVFDEM VNE
Sbjct: 119 NRSDWKPAYILSQLVVKQSVHLSSSMLYNEILDVLGKMRRFEEFHQVFDEMSKRDGFVNE 178
Query: 189 KTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFES 248
KTY +LLNRYAAAH V+EA+GVF+RRKEFG DDL AF LL+WLCRYKHVE AET F S
Sbjct: 179 KTYEVLLNRYAAAHKVDEAVGVFERRKEFGIDDDLVAFHGLLMWLCRYKHVEFAETLFCS 238
Query: 249 EKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKL 308
+ EFG DIK MN+ILNGWCVLGNV+EAKRFWKDII SKC PD V+Y T +NALTKKGKL
Sbjct: 239 RRREFGCDIKAMNMILNGWCVLGNVHEAKRFWKDIIASKCRPDVVSYGTMINALTKKGKL 298
Query: 309 GTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSL 368
G A+ L++AMW+ R PDV CN +IDALCFKKRIPEALEV RE+ +G PNV TYNSL
Sbjct: 299 GKAMELYRAMWDTRRNPDVKICNNVIDALCFKKRIPEALEVFREISEKGPDPNVVTYNSL 358
Query: 369 IKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCK 428
+KHLCKI+R E V+E ++EME K GSC PN++TF+YLLK ++ ++V VLERM +N C+
Sbjct: 359 LKHLCKIRRTEKVWELVEEMELKGGSCSPNDVTFSYLLKYSQRSKDVDIVLERMAKNKCE 418
Query: 429 MSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSY 488
M++D YN++ +LYV WD E+KVR W EME+ G+GPDQR+YT+ IHGL+ KG++ +ALSY
Sbjct: 419 MTSDLYNLMFRLYVQWDKEEKVREIWSEMERSGLGPDQRTYTIRIHGLHTKGKIGEALSY 478
Query: 489 FHEMRLKGMVPEPRTGILVNDMNIKLKERGEQGKKVIKLTS 529
F EM KGMVPEPRT +L+N N K K R E LTS
Sbjct: 479 FQEMMSKGMVPEPRTEMLLNQ-N-KTKPRVEDKMLRSNLTS 517
|
|
| TAIR|locus:2198908 AT1G80550 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
Identities = 132/395 (33%), Positives = 207/395 (52%)
Query: 125 IVNVINRYRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFV---ELI-QVFD 180
+ + Y DW+ A FF WV RE + + FN ++D+LG+ F LI ++
Sbjct: 50 VCEALTCYSNDWQKALEFFNWVERESGFRHTTETFNRVIDILGKYFEFEISWALINRMIG 109
Query: 181 EMPDLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHV- 239
+ N T+ I+ RY AH+V+EAI +D+ +F L D ++F NL+ LC +KHV
Sbjct: 110 NTESVPNHVTFRIVFKRYVTAHLVQEAIDAYDKLDDFN-LRDETSFYNLVDALCEHKHVV 168
Query: 240 EVAETFFESEKNEFGYDI---KTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYA 296
E E F G+ + K N+IL GW LG + K +WK + D +Y+
Sbjct: 169 EAEELCFGKNVIGNGFSVSNTKIHNLILRGWSKLGWWGKCKEYWKKMDTEGVTKDLFSYS 228
Query: 297 TFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNR 356
+++ + K GK A++L++ M + K DVV N +I A+ + + + V REM+ R
Sbjct: 229 IYMDIMCKSGKPWKAVKLYKEMKSRRMKLDVVAYNTVIRAIGASQGVEFGIRVFREMRER 288
Query: 357 GCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVP 416
GC PNV T+N++IK LC+ RM Y LDEM K G C P+ IT+ L L+KP E+
Sbjct: 289 GCEPNVATHNTIIKLLCEDGRMRDAYRMLDEMP-KRG-CQPDSITYMCLFSRLEKPSEIL 346
Query: 417 WVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGL 476
+ RM R+G + DTY ++++ + W V + W+ M++ G PD +Y +I L
Sbjct: 347 SLFGRMIRSGVRPKMDTYVMLMRKFERWGFLQPVLYVWKTMKESGDTPDSAAYNAVIDAL 406
Query: 477 YDKGRLEDALSYFHEMRLKGMVPEPRTGILVNDMN 511
KG L+ A Y EM +G+ P R ++ ++
Sbjct: 407 IQKGMLDMAREYEEEMIERGLSPRRRPELVEKSLD 441
|
|
| TAIR|locus:2096099 AT3G62470 "AT3G62470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
Identities = 132/419 (31%), Positives = 219/419 (52%)
Query: 89 EIAINVQNILKTCSV-----STKGEIEKALNQCELTLTDDLIVNVINRYRFDWEAAYTFF 143
E + N + + + C V + +E L++ +L L+ DLIV V+ R+R + A+ FF
Sbjct: 123 ESSTNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFF 182
Query: 144 KWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEM--PDLVNEKTYGILLNRYAAA 201
W + ++ S +N+++ +L + R+F ++ V +EM L+ +T+ I + +AAA
Sbjct: 183 CWAAERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAA 242
Query: 202 HMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMN 261
++A+G+F+ K++ + LL L R K + A+ F+ K F ++ T
Sbjct: 243 KERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYT 302
Query: 262 IILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEK 321
++LNGWC + N+ EA R W D+I +PD V + + L + K A++LF M K
Sbjct: 303 VLLNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSK 362
Query: 322 GRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETV 381
G P+V + +I C + + A+E +M + G P+ Y LI K+++TV
Sbjct: 363 GPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTV 422
Query: 382 YEYLDEMEQKNGSCLPNEITFNYLLKSL---KKPEEVPWVLERMERNGCKMSTDTYNVIL 438
YE L EM++K P+ T+N L+K + K PE + +M +N + S T+N+I+
Sbjct: 423 YELLKEMQEKGHP--PDGKTYNALIKLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIM 480
Query: 439 KLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGM 497
K Y + R WEEM KKG+ PD SYTV+I GL +G+ +A Y EM KGM
Sbjct: 481 KSYFMARNYEMGRAVWEEMIKKGICPDDNSYTVLIRGLIGEGKSREACRYLEEMLDKGM 539
|
|
| TAIR|locus:2096074 AT3G62540 "AT3G62540" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
Identities = 131/419 (31%), Positives = 219/419 (52%)
Query: 89 EIAINVQNILKTCSV-----STKGEIEKALNQCELTLTDDLIVNVINRYRFDWEAAYTFF 143
E + N + + + C V + +E L++ +L L+ DLIV V+ R+R + A+ FF
Sbjct: 123 ESSTNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFF 182
Query: 144 KWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEM--PDLVNEKTYGILLNRYAAA 201
W + ++ S +N+++ +L + R+F ++ V +EM L+ +T+ I + +AAA
Sbjct: 183 CWAAERQGFAHASRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAA 242
Query: 202 HMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMN 261
++A+G+F+ K++ + LL L R K + A+ F+ K F ++ T
Sbjct: 243 KERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYT 302
Query: 262 IILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEK 321
++LNGWC + N+ EA R W D+I +PD V + + L + K A++LF M K
Sbjct: 303 VLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSK 362
Query: 322 GRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETV 381
G P+V + +I C + + A+E +M + G P+ Y LI K+++TV
Sbjct: 363 GPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTV 422
Query: 382 YEYLDEMEQKNGSCLPNEITFNYLLKSL---KKPEEVPWVLERMERNGCKMSTDTYNVIL 438
YE L EM++K P+ T+N L+K + K PE + +M +N + S T+N+I+
Sbjct: 423 YELLKEMQEKGHP--PDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIM 480
Query: 439 KLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGM 497
K Y + R W+EM KKG+ PD SYTV+I GL +G+ +A Y EM KGM
Sbjct: 481 KSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGM 539
|
|
| TAIR|locus:2185455 AT5G14820 "AT5G14820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
Identities = 131/419 (31%), Positives = 219/419 (52%)
Query: 89 EIAINVQNILKTCSV-----STKGEIEKALNQCELTLTDDLIVNVINRYRFDWEAAYTFF 143
E + N + + + C V + +E L++ +L L+ DLIV V+ R+R + A+ FF
Sbjct: 122 ESSTNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFF 181
Query: 144 KWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEM--PDLVNEKTYGILLNRYAAA 201
W + ++ S +N+++ +L + R+F ++ V +EM L+ +T+ I + +AAA
Sbjct: 182 CWAAERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAA 241
Query: 202 HMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMN 261
++A+G+F+ K++ + LL L R K + A+ F+ K F ++ T
Sbjct: 242 KERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYT 301
Query: 262 IILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEK 321
++LNGWC + N+ EA R W D+I +PD V + + L + K A++LF M K
Sbjct: 302 VLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSK 361
Query: 322 GRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETV 381
G P+V + +I C + + A+E +M + G P+ Y LI K+++TV
Sbjct: 362 GPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTV 421
Query: 382 YEYLDEMEQKNGSCLPNEITFNYLLKSL---KKPEEVPWVLERMERNGCKMSTDTYNVIL 438
YE L EM++K P+ T+N L+K + K PE + +M +N + S T+N+I+
Sbjct: 422 YELLKEMQEKGHP--PDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIM 479
Query: 439 KLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGM 497
K Y + R W+EM KKG+ PD SYTV+I GL +G+ +A Y EM KGM
Sbjct: 480 KSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGM 538
|
|
| TAIR|locus:2097395 AT3G49730 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 531 (192.0 bits), Expect = 4.0e-51, P = 4.0e-51
Identities = 132/449 (29%), Positives = 236/449 (52%)
Query: 88 DEIAINVQNILKTCSV--STKGEIEKALNQCELTLTDDLIVNVINRYRFDWEAAYTFFKW 145
DE A V+ I + S ++E ALN+ + L LI+ V++R Y FF W
Sbjct: 61 DEFAGEVEKIYRILRNHHSRVPKLELALNESGIDLRPGLIIRVLSRCGDAGNLGYRFFLW 120
Query: 146 VSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEM----PDLVNEKTYGILLNRYAAA 201
+++ Y V +++ +L + R+F + + +EM P+L+ + + +L+ R+A+A
Sbjct: 121 ATKQPGYFHSYEVCKSMVMILSKMRQFGAVWGLIEEMRKTNPELIEPELFVVLMRRFASA 180
Query: 202 HMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMN 261
+MV++A+ V D ++G D F LL LC+ V+ A FE + +F +++
Sbjct: 181 NMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMREKFPPNLRYFT 240
Query: 262 IILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEK 321
+L GWC G + EAK + ++ EPD V + ++ GK+ A L M ++
Sbjct: 241 SLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKR 300
Query: 322 GRKPDVVTCNCIIDALC-FKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMET 380
G +P+V +I ALC +KR+ EA+ V EM+ GC ++ TY +LI CK ++
Sbjct: 301 GFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDK 360
Query: 381 VYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPE---EVPWVLERMERNGCKMSTDTYNVI 437
Y LD+M +K +P+++T+ ++ + +K E E ++E+M+R GC YNV+
Sbjct: 361 GYSVLDDMRKKG--VMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVV 418
Query: 438 LKLYVNW-DCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKG 496
++L + ++ VR W EME G+ P ++ +MI+G +G L +A ++F EM +G
Sbjct: 419 IRLACKLGEVKEAVR-LWNEMEANGLSPGVDTFVIMINGFTSQGFLIEACNHFKEMVSRG 477
Query: 497 MVPEPRTGILVNDMNIKLKE-RGEQGKKV 524
+ P+ G L + +N +++ + E K V
Sbjct: 478 IFSAPQYGTLKSLLNNLVRDDKLEMAKDV 506
|
|
| TAIR|locus:2156213 AT5G65820 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
Identities = 140/468 (29%), Positives = 243/468 (51%)
Query: 77 DEKSEFQRYPGDEIAINVQN---ILKTCSVSTKGEIEKALNQCELTLTDDLIVNVINRYR 133
+++++ +Y DE A +V+ IL+ S ++E ALN+ + L LI V+NR
Sbjct: 68 NDRTKNSKY--DEFASDVEKSYRILRKFH-SRVPKLELALNESGVELRPGLIERVLNRCG 124
Query: 134 FDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEM----PDLVNEK 189
Y FF W +++ Y V+ +++ +L + R+F + + +EM P L+ +
Sbjct: 125 DAGNLGYRFFVWAAKQPRYCHSIEVYKSMVKILSKMRQFGAVWGLIEEMRKENPQLIEPE 184
Query: 190 TYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESE 249
+ +L+ R+A+A MV++AI V D +FG D F LL LC++ V+ A FE
Sbjct: 185 LFVVLVQRFASADMVKKAIEVLDEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKLFEDM 244
Query: 250 KNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLG 309
+ F +++ +L GWC +G + EAK + ++ EPD V Y ++ GK+
Sbjct: 245 RMRFPVNLRYFTSLLYGWCRVGKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMA 304
Query: 310 TALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLI 369
A L + M +G +P+ +I ALC R+ EA++V EM+ C +V TY +L+
Sbjct: 305 DAYDLLRDMRRRGFEPNANCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALV 364
Query: 370 KHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMER-NGCK 428
CK +++ Y LD+M +K +P+E+T+ +++ + +K E LE ME+ +
Sbjct: 365 SGFCKWGKIDKCYIVLDDMIKKG--LMPSELTYMHIMVAHEKKESFEECLELMEKMRQIE 422
Query: 429 MSTDT--YNVILKLYVNW-DCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDA 485
D YNV+++L + ++ VR W EME+ G+ P ++ +MI+GL +G L +A
Sbjct: 423 YHPDIGIYNVVIRLACKLGEVKEAVR-LWNEMEENGLSPGVDTFVIMINGLASQGCLLEA 481
Query: 486 LSYFHEMRLKGMVPEPRTGILVNDMNIKLKERG-EQGKKVIK-LTSLG 531
+F EM +G+ + G L +N LK++ E K V +TS G
Sbjct: 482 SDHFKEMVTRGLFSVSQYGTLKLLLNTVLKDKKLEMAKDVWSCITSKG 529
|
|
| TAIR|locus:2035206 AT1G52640 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
Identities = 128/428 (29%), Positives = 210/428 (49%)
Query: 86 PGDEIAINVQNILKTCSVSTKGEIEKALNQCELTLTDDLIVNVINRYRFDWEAAYTFFKW 145
P ++ + +L + K ++E L ++ +L+ V+ R + A+ FF W
Sbjct: 33 PSPDLVNEISRVLSDHR-NPKDDLEHTLVAYSPRVSSNLVEQVLKRCKNLGFPAHRFFLW 91
Query: 146 VSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMPDL----VNEKTYGILLNRYAAA 201
R D++ ++ ++++LG +++F L E + ++ K + I+ Y+ A
Sbjct: 92 ARRIPDFAHSLESYHILVEILGSSKQFALLWDFLIEAREYNYFEISSKVFWIVFRAYSRA 151
Query: 202 HMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGY--DIKT 259
++ EA F+R EFG + LL LC KHV A+ FF K FG KT
Sbjct: 152 NLPSEACRAFNRMVEFGIKPCVDDLDQLLHSLCDKKHVNHAQEFFGKAKG-FGIVPSAKT 210
Query: 260 MNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMW 319
+I++ GW + + A++ + ++++ C D + Y ++AL K G + ++FQ M
Sbjct: 211 YSILVRGWARIRDASGARKVFDEMLERNCVVDLLAYNALLDALCKSGDVDGGYKMFQEMG 270
Query: 320 EKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRME 379
G KPD + I A C + A +VL MK +PNV T+N +IK LCK ++++
Sbjct: 271 NLGLKPDAYSFAIFIHAYCDAGDVHSAYKVLDRMKRYDLVPNVYTFNHIIKTLCKNEKVD 330
Query: 380 TVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEV---PWVLERMERNGCKMSTDTYNV 436
Y LDEM QK + P+ T+N ++ EV +L RM+R C TYN+
Sbjct: 331 DAYLLLDEMIQKGAN--PDTWTYNSIMAYHCDHCEVNRATKLLSRMDRTKCLPDRHTYNM 388
Query: 437 ILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLY-DKGRLEDALSYFHEMRLK 495
+LKL + D+ WE M ++ P +YTVMIHGL KG+LE+A YF M +
Sbjct: 389 VLKLLIRIGRFDRATEIWEGMSERKFYPTVATYTVMIHGLVRKKGKLEEACRYFEMMIDE 448
Query: 496 GMVPEPRT 503
G+ P T
Sbjct: 449 GIPPYSTT 456
|
|
| TAIR|locus:2026346 AT1G71060 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
Identities = 131/480 (27%), Positives = 240/480 (50%)
Query: 64 IETAQLVHSLANSDEKSEFQRYPGD-EIAIN--VQNILKTCSVSTK---GEIEKALNQCE 117
+E+ +H +N F + +++ N Q+ + C + TK ++E LN+
Sbjct: 30 LESIPWIHKASNFTLYGSFHASSVETQVSANDASQDAERICKILTKFTDSKVETLLNEAS 89
Query: 118 LTLTDDLIVNVINRYRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQ 177
+ L+ LI V+ + A + FKW + + ++ +NA+++ LG+ ++F +
Sbjct: 90 VKLSPALIEEVLKKLSNAGVLALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWS 149
Query: 178 VFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCR 235
+ D+M L++++T+ ++ RYA A V+EAIG F + +EFG + S F +L L +
Sbjct: 150 LVDDMKAKKLLSKETFALISRRYARARKVKEAIGAFHKMEEFGFKMESSDFNRMLDTLSK 209
Query: 236 YKHVEVAETFFES-EKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVT 294
++V A+ F+ +K F DIK+ I+L GW N+ +++ EPD V
Sbjct: 210 SRNVGDAQKVFDKMKKKRFEPDIKSYTILLEGWGQELNLLRVDEVNREMKDEGFEPDVVA 269
Query: 295 YATFVNALTKKGKLGTALRLFQAMWEKGRKPDV-VTCNCIIDALCFKKRIPEALEVLREM 353
Y +NA K K A+R F M ++ KP + C+ +I+ L +K++ +ALE
Sbjct: 270 YGIIINAHCKAKKYEEAIRFFNEMEQRNCKPSPHIFCS-LINGLGSEKKLNDALEFFERS 328
Query: 354 KNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPE 413
K+ G TYN+L+ C +RME Y+ +DEM K PN T++ +L L + +
Sbjct: 329 KSSGFPLEAPTYNALVGAYCWSQRMEDAYKTVDEMRLKGVG--PNARTYDIILHHLIRMQ 386
Query: 414 EVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMI 473
E + C+ + TY ++++++ N + D W+EM+ KG+ P ++ +I
Sbjct: 387 RSKEAYEVYQTMSCEPTVSTYEIMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLI 446
Query: 474 HGLYDKGRLEDALSYFHEMRLKGMVPEPRTGILVNDMNIKLKERGEQGKK---VIKLTSL 530
L + +L++A YF+EM G+ P P G + + + L + G + K V+K+ L
Sbjct: 447 TALCHENKLDEACEYFNEMLDVGIRP-P--GHMFSRLKQTLLDEGRKDKVTDLVVKMDRL 503
|
|
| TAIR|locus:2094394 AT3G22670 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
Identities = 133/467 (28%), Positives = 230/467 (49%)
Query: 69 LVHSLANSDEKSEFQRYP---GDEIAINVQNILKTCSVSTKGE-----IEKALNQCELTL 120
++ SLAN E +F R G+ + V++I K C K + + K L++C++ +
Sbjct: 71 VIPSLANWVESQKFSRQQVSEGNVVKKPVEDIDKVCDFLNKKDTSHEDVVKELSKCDVVV 130
Query: 121 TDDLIVNVINRYRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFD 180
T+ L++ V+ R+ W AY FF W + + Y + +NA++DVLG+ R F + ++ +
Sbjct: 131 TESLVLQVLRRFSNGWNQAYGFFIWANSQTGYVHSGHTYNAMVDVLGKCRNFDLMWELVN 190
Query: 181 EM-----PDLVNEKTYGILLNRYAAAHMVEEAIGVF-DRRKEFGELDDLSAFQNLLLWLC 234
EM LV T ++ R A + +A+ F + K +G D A +L+ L
Sbjct: 191 EMNKNEESKLVTLDTMSKVMRRLAKSGKYNKAVDAFLEMEKSYGVKTDTIAMNSLMDALV 250
Query: 235 RYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIK-SKCEPDSV 293
+ +E A F + D +T NI+++G+C ++ R D++K ++ PD V
Sbjct: 251 KENSIEHAHEVFLKLFDTIKPDARTFNILIHGFCK-ARKFDDARAMMDLMKVTEFTPDVV 309
Query: 294 TYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREM 353
TY +FV A K+G + + M E G P+VVT ++ +L K++ EAL V +M
Sbjct: 310 TYTSFVEAYCKEGDFRRVNEMLEEMRENGCNPNVVTYTIVMHSLGKSKQVAEALGVYEKM 369
Query: 354 KNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSL---K 410
K GC+P+ Y+SLI L K R + E ++M N + + +N ++ +
Sbjct: 370 KEDGCVPDAKFYSSLIHILSKTGRFKDAAEIFEDMT--NQGVRRDVLVYNTMISAALHHS 427
Query: 411 KPEEVPWVLERME-RNG--CKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQR 467
+ E +L+RME G C + +TY +LK+ + + M K + D
Sbjct: 428 RDEMALRLLKRMEDEEGESCSPNVETYAPLLKMCCHKKKMKLLGILLHHMVKNDVSIDVS 487
Query: 468 SYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRT-GILVNDMNIK 513
+Y ++I GL G++E+A +F E KGMVP T +LV+++ K
Sbjct: 488 TYILLIRGLCMSGKVEEACLFFEEAVRKGMVPRDSTCKMLVDELEKK 534
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LIL5 | PP233_ARATH | No assigned EC number | 0.5487 | 0.8936 | 0.9158 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 536 | |||
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-19 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-14 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-11 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 8e-10 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-08 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-07 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 7e-07 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-06 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-06 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 6e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-05 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-04 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 6e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 0.004 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 80.1 bits (199), Expect = 5e-19
Identities = 28/50 (56%), Positives = 34/50 (68%)
Query: 325 PDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCK 374
PDVVT N +ID C K ++ EAL++ EMK RG PNV TY+ LI LCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 7e-14
Identities = 66/279 (23%), Positives = 108/279 (38%), Gaps = 55/279 (19%)
Query: 148 REGDYSPGSNVFNAILDVLGRARRFVELIQVFDEM--------PDLVNEKTYGILLNRYA 199
R + P VFNA++ G++ V EM PD + T G L+ A
Sbjct: 534 RSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHI---TVGALMKACA 590
Query: 200 AAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIK- 258
A V+ A V+ E Y+IK
Sbjct: 591 NAGQVDRAKEVYQMIHE--------------------------------------YNIKG 612
Query: 259 ---TMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLF 315
I +N G+ A + D+ K +PD V ++ V+ G L A +
Sbjct: 613 TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEIL 672
Query: 316 QAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKI 375
Q ++G K V+ + ++ A K +ALE+ ++K+ P V+T N+LI LC+
Sbjct: 673 QDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEG 732
Query: 376 KRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEE 414
++ E L EM K PN IT++ LL + ++ ++
Sbjct: 733 NQLPKALEVLSEM--KRLGLCPNTITYSILLVASERKDD 769
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 68.0 bits (166), Expect = 7e-12
Identities = 45/172 (26%), Positives = 83/172 (48%), Gaps = 5/172 (2%)
Query: 271 GNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTC 330
G V AK ++ I + + Y VN+ ++KG AL ++ M +KG KPD V
Sbjct: 593 GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFF 652
Query: 331 NCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQ 390
+ ++D + +A E+L++ + +G +Y+SL+ K + E +++
Sbjct: 653 SALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI-- 710
Query: 391 KNGSCLPNEITFNYLLKSLKKPEEVP---WVLERMERNGCKMSTDTYNVILK 439
K+ P T N L+ +L + ++P VL M+R G +T TY+++L
Sbjct: 711 KSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 59.7 bits (146), Expect = 8e-12
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 360 PNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKK 411
P+V TYN+LI CK ++E + +EM+++ PN T++ L+ L K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRG--IKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 59.0 bits (144), Expect = 2e-11
Identities = 24/49 (48%), Positives = 33/49 (67%)
Query: 290 PDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALC 338
PD VTY T ++ KKGK+ AL+LF M ++G KP+V T + +ID LC
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 8e-10
Identities = 44/216 (20%), Positives = 92/216 (42%), Gaps = 9/216 (4%)
Query: 290 PDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEV 349
D Y T ++ K GK+ +F M G + +V T +ID ++ +A
Sbjct: 470 ADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGA 529
Query: 350 LREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSL 409
M+++ P+ +N+LI + ++ ++ L EM+ + P+ IT L+K+
Sbjct: 530 YGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKAC 589
Query: 410 KKPEEVPWVLE---RMERNGCKMSTDTYNVILK---LYVNWDCEDKVRHTWEEMEKKGMG 463
+V E + K + + Y + + +WD + +++M+KKG+
Sbjct: 590 ANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSI---YDDMKKKGVK 646
Query: 464 PDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVP 499
PD+ ++ ++ G L+ A + R +G+
Sbjct: 647 PDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 6e-09
Identities = 56/227 (24%), Positives = 95/227 (41%), Gaps = 31/227 (13%)
Query: 290 PDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEV 349
PD +T A+ ++A G L ++L + KG VV N +I+ K I +ALEV
Sbjct: 387 PDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEV 446
Query: 350 LREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLK-- 407
+ + +V ++ S+I L R +E L Q + PN +T L
Sbjct: 447 FHNIPEK----DVISWTSIIAGLRLNNR---CFEALIFFRQMLLTLKPNSVTLIAALSAC 499
Query: 408 ----SLKKPEEV-PWVLERMERNGCKMSTDTY--NVILKLYVNWDCEDKVRHTWEEM--E 458
+L +E+ VL + D + N +L LYV C ++ + W +
Sbjct: 500 ARIGALMCGKEIHAHVLR------TGIGFDGFLPNALLDLYVR--C-GRMNYAWNQFNSH 550
Query: 459 KKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRTGI 505
+K D S+ +++ G G+ A+ F+ M G+ P+ T I
Sbjct: 551 EK----DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFI 593
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 1e-08
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 256 DIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTK 304
D+ T N +++G+C G V EA + + ++ K +P+ TY+ ++ L K
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 50.0 bits (121), Expect = 1e-08
Identities = 20/34 (58%), Positives = 25/34 (73%)
Query: 321 KGRKPDVVTCNCIIDALCFKKRIPEALEVLREMK 354
KG KPDVVT N +ID LC R+ EA+E+L EM+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 1e-07
Identities = 58/236 (24%), Positives = 99/236 (41%), Gaps = 13/236 (5%)
Query: 271 GNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTC 330
V EA RF K I P T+ ++ + ALR+ + + E G K D
Sbjct: 420 RAVKEAFRFAKLIR----NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLY 475
Query: 331 NCIIDALCFKKRIPEAL-EVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEME 389
+I C K +A+ EV EM N G NV T+ +LI + ++ + M
Sbjct: 476 TTLIST-CAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMR 534
Query: 390 QKNGSCLPNEITFNYLLKSLKKPEEVPW---VLERMERNGCKMSTD--TYNVILKLYVNW 444
KN P+ + FN L+ + + V VL M+ + D T ++K N
Sbjct: 535 SKN--VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANA 592
Query: 445 DCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPE 500
D+ + ++ + + + YT+ ++ KG + ALS + +M+ KG+ P+
Sbjct: 593 GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD 648
|
Length = 1060 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.8 bits (110), Expect = 4e-07
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 356 RGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEME 389
+G P+V TYN+LI LC+ R++ E LDEME
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 7e-07
Identities = 85/378 (22%), Positives = 144/378 (38%), Gaps = 60/378 (15%)
Query: 160 NAILDVLGRARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGE 219
NA+L + R V VF +MP+ + ++ +L+ YA A +EA+ ++ R G
Sbjct: 125 NAMLSMFVRFGELVHAWYVFGKMPER-DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGV 183
Query: 220 LDDLSAFQNLL--------LWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLG 271
D+ F +L L R H V FE D+ +N ++ + G
Sbjct: 184 RPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFEL-------DVDVVNALITMYVKCG 236
Query: 272 NVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCN 331
+V A+ + + + C +++ ++ + G+ L LF M E PD++T
Sbjct: 237 DVVSARLVFDRMPRRDC----ISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTIT 292
Query: 332 CIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEME-- 389
+I A E+ + G +V+ NSLI+ + + ME
Sbjct: 293 SVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK 352
Query: 390 ------------QKNGSCLPNEITFNYLLKSLK--KPEEV--PWVL-------------- 419
+KNG LP++ Y L P+E+ VL
Sbjct: 353 DAVSWTAMISGYEKNG--LPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVK 410
Query: 420 --ERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLY 477
E ER G N ++++Y C DK + + +K D S+T +I GL
Sbjct: 411 LHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLR 466
Query: 478 DKGRLEDALSYFHEMRLK 495
R +AL +F +M L
Sbjct: 467 LNNRCFEALIFFRQMLLT 484
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 1e-06
Identities = 62/348 (17%), Positives = 125/348 (35%), Gaps = 77/348 (22%)
Query: 152 YSPGSNVFNAILDVLGRARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVF 211
+ P + N +L + + ++ ++FDEMP+ N ++G ++ A EA +F
Sbjct: 154 FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER-NLASWGTIIGGLVDAGNYREAFALF 212
Query: 212 DRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLG 271
R+ + + D AE +T ++L LG
Sbjct: 213 --REMWEDGSD-------------------AEP-------------RTFVVMLRASAGLG 238
Query: 272 NVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCN 331
+ ++ ++K+ D+ ++ +K G + A +F M EK V N
Sbjct: 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK----TTVAWN 294
Query: 332 CIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQK 391
++ EAL + EM++ G + T++ +I+ ++ +E + + +
Sbjct: 295 SMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT 354
Query: 392 NGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVR 451
P +I N L + LY W + R
Sbjct: 355 G---FPLDIVANTAL-------------------------------VDLYSKWGRMEDAR 380
Query: 452 HTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVP 499
+ ++ M +K + S+ +I G + GR A+ F M +G+ P
Sbjct: 381 NVFDRMPRKNL----ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP 424
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 2e-06
Identities = 45/180 (25%), Positives = 84/180 (46%), Gaps = 20/180 (11%)
Query: 256 DIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLF 315
D+ + NI+L G+ G A + +++S PD VT+ + + A ++ G + L F
Sbjct: 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYF 612
Query: 316 QAMWEK-GRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCK 374
+M EK P++ C++D L ++ EA + +M P+ + +L+ + C+
Sbjct: 613 HSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPIT---PDPAVWGALL-NACR 668
Query: 375 IKRM----ETVYEYLDEMEQKNGSCLPNEITFNYLLKSL----KKPEEVPWVLERMERNG 426
I R E +++ E++ PN + + LL +L K +EV V + M NG
Sbjct: 669 IHRHVELGELAAQHIFELD-------PNSVGYYILLCNLYADAGKWDEVARVRKTMRENG 721
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.5 bits (104), Expect = 4e-06
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 433 TYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGL 476
TYN ++ Y ++ + EM+K+G+ P+ +Y+++I GL
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 6e-06
Identities = 42/185 (22%), Positives = 71/185 (38%), Gaps = 40/185 (21%)
Query: 320 EKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLP-NVTTYNSLIKHLCKIKRM 378
+ RK V C+ I + L R EALE+ ++ +TY++L++
Sbjct: 81 TQIRKSGVSLCSQI-EKLVACGRHREALELFEILEAGCPFTLPASTYDALVE-------- 131
Query: 379 ETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVIL 438
+C+ +LK V V +E +G + N +L
Sbjct: 132 ---------------ACI-----------ALKSIRCVKAVYWHVESSGFEPDQYMMNRVL 165
Query: 439 KLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMV 498
++V R ++EM ++ + S+ +I GL D G +A + F EM G
Sbjct: 166 LMHVKCGMLIDARRLFDEMPER----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSD 221
Query: 499 PEPRT 503
EPRT
Sbjct: 222 AEPRT 226
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 9e-06
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 464 PDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVP 499
PD +Y +I G KG++E+AL F+EM+ +G+ P
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKP 36
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 1e-05
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 328 VTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNV 362
VT N +ID LC R+ EALE+ +EMK RG P+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 2e-05
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 7/107 (6%)
Query: 286 SKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKR--- 342
+ E D V++ + GK A+ LF M E G PD VT I LC R
Sbjct: 548 NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT---FISLLCACSRSGM 604
Query: 343 IPEALEVLREMKNR-GCLPNVTTYNSLIKHLCKIKRMETVYEYLDEM 388
+ + LE M+ + PN+ Y ++ L + ++ Y ++++M
Sbjct: 605 VTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 4e-05
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 467 RSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVP 499
+Y +I GL GR+E+AL F EM+ +G+ P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEP 33
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 5e-05
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 328 VTCNCIIDALCFKKRIPEALEVLREMKNRGC 358
VT N +I C ++ EALE+ +EMK +G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.9 bits (92), Expect = 1e-04
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 288 CEPDSVTYATFVNALTKKGKLGTALRLFQAM 318
+PD VTY T ++ L + G++ A+ L M
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 2e-04
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 468 SYTVMIHGLYDKGRLEDALSYFHEMRLKGM 497
+Y +I G G+LE+AL F EM+ KG+
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 37.3 bits (88), Expect = 4e-04
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 460 KGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMR 493
KG+ PD +Y +I GL GR+++A+ EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 4e-04
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 293 VTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDV 327
VTY T ++ L K G++ AL LF+ M E+G +PDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 6e-04
Identities = 48/203 (23%), Positives = 86/203 (42%), Gaps = 19/203 (9%)
Query: 234 CRYKHVEVAETFFES--EKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPD 291
++ +E A F+ KN + + N ++ G+ G +A ++ +I P+
Sbjct: 371 SKWGRMEDARNVFDRMPRKN-----LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN 425
Query: 292 SVTYATFVNALTKKGKLGTALRLFQAMWEKGR-KPDVVTCNCIIDALCFKKRIPEALEVL 350
VT+ ++A G +FQ+M E R KP + C+I+ L + + EA ++
Sbjct: 426 HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMI 485
Query: 351 REMKNRGCLPNVTTYNSLIKHLCKI-KRME---TVYEYLDEMEQKNGSCLPNEITFNYLL 406
R + P V + +L+ C+I K +E E L M + L N + L
Sbjct: 486 RRAPFK---PTVNMWAALLT-ACRIHKNLELGRLAAEKLYGMGPEK---LNNYVVLLNLY 538
Query: 407 KSLKKPEEVPWVLERMERNGCKM 429
S + E V+E ++R G M
Sbjct: 539 NSSGRQAEAAKVVETLKRKGLSM 561
|
Length = 697 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 364 TYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNE 399
TYN+LI LCK R+E E EM+++ P+
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERG--IEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 364 TYNSLIKHLCKIKRMETVYEYLDEMEQKN 392
TYNSLI CK ++E E EM++K
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.002
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 362 VTTYNSLIKHLCKIKRMETVYEYLDEMEQKN 392
+ TYN+L+ L K + L+EM+
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASG 31
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.004
Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 1/107 (0%)
Query: 268 CVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDV 327
N +A ++DI K P T + AL + +L AL + M G P+
Sbjct: 695 SNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT 754
Query: 328 VTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCK 374
+T + ++ A K L++L + K G PN+ + LC
Sbjct: 755 ITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITG-LCL 800
|
Length = 1060 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 536 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.95 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.95 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.92 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.86 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.85 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.84 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.84 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.84 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.83 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.81 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.8 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.8 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.79 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.78 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.77 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.72 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.69 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.67 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.64 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.63 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.63 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.61 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.59 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.56 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.56 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.55 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.55 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.54 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.53 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.51 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.51 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.5 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.5 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.5 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.48 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.47 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.44 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.44 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.42 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.42 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.39 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.38 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.38 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.37 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.37 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.37 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.37 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.36 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.36 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.34 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.34 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.32 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.32 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.28 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.27 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.22 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.18 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.17 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.14 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.13 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.12 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.11 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.11 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.07 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.07 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.06 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.04 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.01 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.01 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.0 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.0 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.97 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.94 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.92 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.88 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.82 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.81 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.8 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.8 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.78 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.78 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.77 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.74 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.73 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.69 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.68 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.66 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.65 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.63 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.62 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.62 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.6 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.6 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.59 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.58 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.58 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.56 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.54 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.54 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.52 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.52 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.52 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.5 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.5 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.49 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.49 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.44 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.42 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.41 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.39 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.38 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.37 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.35 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.35 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.34 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.33 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.32 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.31 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.31 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.3 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.3 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.28 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.27 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.26 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.24 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.21 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.2 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.18 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.17 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.15 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.15 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.06 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.06 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.02 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.98 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.96 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.95 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.91 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.9 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.86 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.86 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.86 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.8 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.77 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.7 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.67 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.64 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.63 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.62 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.62 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.62 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.56 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.55 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.54 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.49 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.46 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.4 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.4 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.4 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.38 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.37 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.35 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.34 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.32 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.32 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.31 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.3 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.29 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.28 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.26 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.23 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.14 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.11 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.09 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.03 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.0 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.9 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.88 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.84 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.77 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.74 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.72 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.72 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.71 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.68 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.67 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.66 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.64 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.61 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.61 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.6 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.56 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.56 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.53 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.49 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.34 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.3 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.26 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.19 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.19 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.16 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.14 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.12 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.09 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 96.05 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.04 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.03 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.03 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.95 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 95.94 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 95.85 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.84 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.77 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.76 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.58 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.57 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 95.55 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.54 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.54 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.5 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.49 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.46 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.31 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 95.24 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.19 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.19 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.16 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.95 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 94.87 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.83 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.79 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.76 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 94.72 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.59 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.5 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.5 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.38 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.21 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.21 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.19 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.03 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 93.97 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.86 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.75 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 93.71 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.64 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.61 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 93.56 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.52 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.43 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.3 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.25 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.01 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 92.87 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 92.7 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 92.65 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 92.61 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 92.59 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 92.45 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 92.41 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 92.08 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 92.06 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 91.87 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 91.71 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 91.63 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 91.45 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 91.26 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.26 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 91.17 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.13 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 91.11 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 90.81 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 90.66 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 90.4 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 90.4 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 89.74 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 89.15 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 88.88 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 88.55 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 88.53 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 88.41 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 88.31 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 88.06 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 87.56 | |
| PRK09687 | 280 | putative lyase; Provisional | 87.05 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 86.42 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 86.18 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 86.18 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 85.65 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 85.57 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 85.53 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 85.31 | |
| PRK09687 | 280 | putative lyase; Provisional | 85.27 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 85.17 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 84.99 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 84.99 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 84.79 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 84.43 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 83.92 | |
| KOG4077 | 149 | consensus Cytochrome c oxidase, subunit Va/COX6 [E | 83.29 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 83.18 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 82.99 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 82.8 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 82.79 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 82.69 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 82.34 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 81.86 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 81.37 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 81.32 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 81.26 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 81.01 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 80.97 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 80.88 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 80.23 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 80.03 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-62 Score=513.01 Aligned_cols=411 Identities=16% Similarity=0.233 Sum_probs=391.6
Q ss_pred HHHHHHHHhc--cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 048749 123 DLIVNVINRY--RFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMPDLVNEKTYGILLNRYAA 200 (536)
Q Consensus 123 ~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~ 200 (536)
..++.++..+ .|+++.|+++|++|.+.+-..++...++.++..|.+.|.+++|..+|+.|.. ||..+|+.++.+|++
T Consensus 371 ~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-pd~~Tyn~LL~a~~k 449 (1060)
T PLN03218 371 PEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-PTLSTFNMLMSVCAS 449 (1060)
T ss_pred hHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-CCHHHHHHHHHHHHh
Confidence 3444444433 3699999999999999875678888999999999999999999999999986 999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh-cCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048749 201 AHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESE-KNEFGYDIKTMNIILNGWCVLGNVYEAKRF 279 (536)
Q Consensus 201 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 279 (536)
.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+++.|.++|++| ..++.||..+|+.||.+|++.|++++|.++
T Consensus 450 ~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~l 529 (1060)
T PLN03218 450 SQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGA 529 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999997 567899999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH--cCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048749 280 WKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWE--KGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRG 357 (536)
Q Consensus 280 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 357 (536)
|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.|++++|.++|++|.+.|
T Consensus 530 f~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~g 609 (1060)
T PLN03218 530 YGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYN 609 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999987 6899999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCC---ChHHHHHHHHHHCCCCCCHHHH
Q 048749 358 CLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKP---EEVPWVLERMERNGCKMSTDTY 434 (536)
Q Consensus 358 ~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~---~~a~~~~~~~~~~~~~~~~~~~ 434 (536)
+.|+..+|+.+|.+|++.|++++|.++|++|.+.| +.||..+|+.++.+|++. ++|.++++.|.+.|+.||..+|
T Consensus 610 i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G--v~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ty 687 (1060)
T PLN03218 610 IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG--VKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSY 687 (1060)
T ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999999999999999999 999999999999999654 5678999999999999999999
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhh
Q 048749 435 NVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRTGILVNDMNIKL 514 (536)
Q Consensus 435 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~ 514 (536)
+.||.+|+++|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||..++.+|.+.
T Consensus 688 nsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~ 767 (1060)
T PLN03218 688 SSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERK 767 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHhhhccCCCCC
Q 048749 515 KERGEQGKKVIKLTSLGLKGNA 536 (536)
Q Consensus 515 ~~~~~a~~~~~~~~~~g~~p~a 536 (536)
|+.++|.+.+.+|.+.|+.||.
T Consensus 768 G~le~A~~l~~~M~k~Gi~pd~ 789 (1060)
T PLN03218 768 DDADVGLDLLSQAKEDGIKPNL 789 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCH
Confidence 9999999999999999999983
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-62 Score=511.17 Aligned_cols=451 Identities=19% Similarity=0.215 Sum_probs=362.0
Q ss_pred cCC-CCccccccCCChH----HHHHHHHHHhhCCC-CChhHHHHHHhhcCCCCCHHHHHHHHHhc--cCCHHHHHHHHHH
Q 048749 74 ANS-DEKSEFQRYPGDE----IAINVQNILKTCSV-STKGEIEKALNQCELTLTDDLIVNVINRY--RFDWEAAYTFFKW 145 (536)
Q Consensus 74 ~~~-~~~~~f~~~~~~~----~~~~~~~~l~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~l~~~--~~~~~~a~~~~~~ 145 (536)
+.. ++..+|++|+.+. .......++..+.. ....++...++.+.. ++..++..++..+ .++++.|+++|+.
T Consensus 384 G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-pd~~Tyn~LL~a~~k~g~~e~A~~lf~~ 462 (1060)
T PLN03218 384 GRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-PTLSTFNMLMSVCASSQDIDGALRVLRL 462 (1060)
T ss_pred cCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 444 5677787776541 11111222222222 223455555555544 5655555555443 3688899999999
Q ss_pred HHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 048749 146 VSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP---DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDD 222 (536)
Q Consensus 146 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 222 (536)
|.+.+ +.||..+|+.+|.+|++.|++++|.++|++|. ..||..+|+.+|.+|++.|++++|+++|++|.+.|+.||
T Consensus 463 M~~~G-l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD 541 (1060)
T PLN03218 463 VQEAG-LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD 541 (1060)
T ss_pred HHHcC-CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC
Confidence 88876 88899999999999999999999999999888 457888999999999999999999999999998899999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhc---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048749 223 LSAFQNLLLWLCRYKHVEVAETFFESEK---NEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFV 299 (536)
Q Consensus 223 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 299 (536)
..+|+.+|.+|++.|++++|.++|++|. .++.||..+|+++|.+|++.|++++|.++|++|.+.|+.|+..+|+.+|
T Consensus 542 ~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI 621 (1060)
T PLN03218 542 RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAV 621 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHH
Confidence 9999999999999999999999998874 4578888999999999999999999999999999888888999999999
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 048749 300 NALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRME 379 (536)
Q Consensus 300 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 379 (536)
.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|+++
T Consensus 622 ~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~e 701 (1060)
T PLN03218 622 NSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWK 701 (1060)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999989999999999999999999999999999999998888999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCC---CChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHH
Q 048749 380 TVYEYLDEMEQKNGSCLPNEITFNYLLKSLKK---PEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEE 456 (536)
Q Consensus 380 ~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 456 (536)
+|.++|++|.+.+ ..||..+|+.++.+|++ .++|.+++++|.+.|+.||..+|+.++.+|++.|++++|.+++++
T Consensus 702 eA~~lf~eM~~~g--~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~ 779 (1060)
T PLN03218 702 KALELYEDIKSIK--LRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQ 779 (1060)
T ss_pred HHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999998887 88999999999988854 456778888888888899999999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHh----c-------------------CCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHh
Q 048749 457 MEKKGMGPDQRSYTVMIHGLYD----K-------------------GRLEDALSYFHEMRLKGMVPEPRTGILVNDMNIK 513 (536)
Q Consensus 457 m~~~g~~p~~~~~~~li~~~~~----~-------------------g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~ 513 (536)
|.+.|+.||..+|+.|+..|.+ . +..++|+.+|++|++.|+.||..||..++.++.+
T Consensus 780 M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~ 859 (1060)
T PLN03218 780 AKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQL 859 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc
Confidence 9988999999999888865432 1 2246788889999999999998888888766655
Q ss_pred hhhhhhhhHHHHHhh
Q 048749 514 LKERGEQGKKVIKLT 528 (536)
Q Consensus 514 ~~~~~~a~~~~~~~~ 528 (536)
.+....+.+.+.+|.
T Consensus 860 ~~~~~~~~~m~~~m~ 874 (1060)
T PLN03218 860 PHDATLRNRLIENLG 874 (1060)
T ss_pred cccHHHHHHHHHHhc
Confidence 554444444444443
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-63 Score=528.59 Aligned_cols=501 Identities=16% Similarity=0.172 Sum_probs=365.3
Q ss_pred cccchhhhhccccccCCCCCcccccccccccccC--ccccccchhhhhhhhhhhcCC-CCccccccCCChHHHHHHHHHH
Q 048749 22 FHSQLTTQFSKLQSCNSVTSHKTLIPIINLQARN--SEFLFLGRIETAQLVHSLANS-DEKSEFQRYPGDEIAINVQNIL 98 (536)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~f~~~~~~~~~~~~~~~l 98 (536)
.+++..++..+++.|...+....|..+|+...+. ..+.++.+. ++++|.+++.. .+..+|++++.+ ++.+|+.++
T Consensus 82 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~-li~~~~~~g~~~~A~~~f~~m~~~-d~~~~n~li 159 (857)
T PLN03077 82 VPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNA-MLSMFVRFGELVHAWYVFGKMPER-DLFSWNVLV 159 (857)
T ss_pred CCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHH-HHHHHHhCCChHHHHHHHhcCCCC-CeeEHHHHH
Confidence 4556667888889998888888888888876554 333445555 89999999988 788999999987 688999999
Q ss_pred hhCCCCCh-hHHHHHH---hhcCCCCCHHHHHHHHHhcc--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCH
Q 048749 99 KTCSVSTK-GEIEKAL---NQCELTLTDDLIVNVINRYR--FDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRF 172 (536)
Q Consensus 99 ~~~~~~~~-~~~~~~l---~~~~~~~~~~~~~~~l~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 172 (536)
..+...+. +++...+ ...|..|+..++..++..+. +++..+.+++..+.+.+ +.||..+||.+|.+|+++|++
T Consensus 160 ~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~n~Li~~y~k~g~~ 238 (857)
T PLN03077 160 GGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFG-FELDVDVVNALITMYVKCGDV 238 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcC-CCcccchHhHHHHHHhcCCCH
Confidence 98876532 4444444 34589999999888888764 57889999999999976 999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh-cC
Q 048749 173 VELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESE-KN 251 (536)
Q Consensus 173 ~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~ 251 (536)
++|.++|++|. .+|..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.|.+++..+ +.
T Consensus 239 ~~A~~lf~~m~-~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~ 317 (857)
T PLN03077 239 VSARLVFDRMP-RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKT 317 (857)
T ss_pred HHHHHHHhcCC-CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHh
Confidence 99999999998 47889999999999999999999999999999999999999999999888888888888888885 56
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHH
Q 048749 252 EFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCN 331 (536)
Q Consensus 252 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 331 (536)
++.||..+||.||.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|+++|++|.+.|+.||..||+
T Consensus 318 g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~ 393 (857)
T PLN03077 318 GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIA 393 (857)
T ss_pred CCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHH
Confidence 778888888888888888888888888888775 5677778888888888888888888888887777777777777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------------------
Q 048749 332 CIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNG------------------ 393 (536)
Q Consensus 332 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~------------------ 393 (536)
.++.+|++.|++++|.++++.|.+.|+.|+..+|++||.+|++.|++++|.++|++|.+.+.
T Consensus 394 ~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~e 473 (857)
T PLN03077 394 SVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFE 473 (857)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHH
Confidence 77777777777777777777777777777777777777777777766666666666543210
Q ss_pred ----------CCCCcHHHHHHHHHhcCCC---ChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHC
Q 048749 394 ----------SCLPNEITFNYLLKSLKKP---EEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKK 460 (536)
Q Consensus 394 ----------~~~p~~~~~~~ll~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 460 (536)
...||..||+.+|.+|++. +.+.+++..+.+.|+.+|..++++||++|+++|++++|.++|+++
T Consensus 474 A~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--- 550 (857)
T PLN03077 474 ALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--- 550 (857)
T ss_pred HHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc---
Confidence 1578888888888877554 345566666666666554444444444444444444444444443
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhhhhhhhhhHHHHHhh-hccCCCC
Q 048749 461 GMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRTGILVNDMNIKLKERGEQGKKVIKLT-SLGLKGN 535 (536)
Q Consensus 461 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~~~~a~~~~~~~~-~~g~~p~ 535 (536)
.||..+|++||.+|+++|+.++|+++|++|.+.|+.||..||..++.+|.+.|..+++.+.+.+|. +.|+.|+
T Consensus 551 --~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~ 624 (857)
T PLN03077 551 --EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN 624 (857)
T ss_pred --CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc
Confidence 234444444444444444444444444444444444444444444444444444444444444444 3444443
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-60 Score=510.87 Aligned_cols=499 Identities=14% Similarity=0.135 Sum_probs=365.6
Q ss_pred ccccchhhhhccccccCCCCCcccccccccccccC--ccccccchhhhhhhhhhhcCC-CCccccccCCChHHHHHHHHH
Q 048749 21 KFHSQLTTQFSKLQSCNSVTSHKTLIPIINLQARN--SEFLFLGRIETAQLVHSLANS-DEKSEFQRYPGDEIAINVQNI 97 (536)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~f~~~~~~~~~~~~~~~ 97 (536)
...++..|+..+++.|+.......|.++|+...+. ..+.+..+. ++.+|.+++.. .+..+|++++.+ +..+|+.+
T Consensus 182 g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~-Li~~y~k~g~~~~A~~lf~~m~~~-d~~s~n~l 259 (857)
T PLN03077 182 GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNA-LITMYVKCGDVVSARLVFDRMPRR-DCISWNAM 259 (857)
T ss_pred CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhH-HHHHHhcCCCHHHHHHHHhcCCCC-CcchhHHH
Confidence 56677889999999999999999999999987765 445566666 99999999998 788999999987 67899999
Q ss_pred HhhCCCCCh-hHHHHHH---hhcCCCCCHHHHHHHHHhc--cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCC
Q 048749 98 LKTCSVSTK-GEIEKAL---NQCELTLTDDLIVNVINRY--RFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARR 171 (536)
Q Consensus 98 l~~~~~~~~-~~~~~~l---~~~~~~~~~~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 171 (536)
+..+...+. .++...+ ...|..|+..++..++..+ .++.+.|.++|..+.+.+ +.||..+||.+|.+|+++|+
T Consensus 260 i~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g-~~~d~~~~n~Li~~y~k~g~ 338 (857)
T PLN03077 260 ISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTG-FAVDVSVCNSLIQMYLSLGS 338 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhC-CccchHHHHHHHHHHHhcCC
Confidence 998876532 3333333 4468888888888887765 369999999999999986 99999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh-c
Q 048749 172 FVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESE-K 250 (536)
Q Consensus 172 ~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~ 250 (536)
+++|.++|++|. .+|..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+ +
T Consensus 339 ~~~A~~vf~~m~-~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~ 417 (857)
T PLN03077 339 WGEAEKVFSRME-TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAER 417 (857)
T ss_pred HHHHHHHHhhCC-CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 999999999998 47889999999999999999999999999999999999999999999999999999999999885 6
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhH
Q 048749 251 NEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTC 330 (536)
Q Consensus 251 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 330 (536)
.++.|+..+||.||.+|++.|++++|.++|++|. .+|..+|+++|.+|++.|+.++|+++|++|.. ++.||..||
T Consensus 418 ~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~ 492 (857)
T PLN03077 418 KGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTL 492 (857)
T ss_pred hCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHH
Confidence 6788899999999999999999999999888886 46777888888888888888888888888765 477777777
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH------------------------------HHHHHHHHHHHhcCCHHH
Q 048749 331 NCIIDALCFKKRIPEALEVLREMKNRGCLPNV------------------------------TTYNSLIKHLCKIKRMET 380 (536)
Q Consensus 331 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------------------------------~~~~~li~~~~~~~~~~~ 380 (536)
+.++.+|++.|+++.+.+++..+.+.|+.+|. .+||+||.+|++.|+.++
T Consensus 493 ~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~ 572 (857)
T PLN03077 493 IAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSM 572 (857)
T ss_pred HHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHH
Confidence 77776666666666666666666655555554 455555555555555555
Q ss_pred HHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCC---ChHHHHHHHHH-HCCCCCCHHHHHHHHHHHHccCChhHHHHHHHH
Q 048749 381 VYEYLDEMEQKNGSCLPNEITFNYLLKSLKKP---EEVPWVLERME-RNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEE 456 (536)
Q Consensus 381 A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~---~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 456 (536)
|.++|++|.+.| +.||..||+.+|.+|++. +++.++|+.|. +.|+.|+..+|++++++|++.|++++|.+++++
T Consensus 573 A~~lf~~M~~~g--~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 573 AVELFNRMVESG--VNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINK 650 (857)
T ss_pred HHHHHHHHHHcC--CCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 555555555544 455555555555554332 33344455554 345555555555555555555555555555554
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcH-HHHHHHHHHHHhhhhhhhhhHHHHHhhhccCCCC
Q 048749 457 MEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEP-RTGILVNDMNIKLKERGEQGKKVIKLTSLGLKGN 535 (536)
Q Consensus 457 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~ 535 (536)
|. ++||..+|++|+.+|..+|+.+.+....+++.+ +.|+. .+|.++...+...|+++++.+....|.+.|++++
T Consensus 651 m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~ 725 (857)
T PLN03077 651 MP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVD 725 (857)
T ss_pred CC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCC
Confidence 42 345555555555555555555555444444443 33432 2355555566666777777777777777777664
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-58 Score=479.50 Aligned_cols=429 Identities=17% Similarity=0.227 Sum_probs=372.6
Q ss_pred HHHHHHHHHhhCCCCC-hhHHHHHHh---h-cCCCCCHHHHHHHHHhc--cCCHHHHHHHHHHHHhCCCCCCCHHHHHHH
Q 048749 90 IAINVQNILKTCSVST-KGEIEKALN---Q-CELTLTDDLIVNVINRY--RFDWEAAYTFFKWVSREGDYSPGSNVFNAI 162 (536)
Q Consensus 90 ~~~~~~~~l~~~~~~~-~~~~~~~l~---~-~~~~~~~~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 162 (536)
...+|+.++..+...+ ..++...++ . .+..++..++..++..+ .++++.|.++|..+.+.+ +.||..+||.+
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-~~~~~~~~n~L 164 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG-FEPDQYMMNRV 164 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCcchHHHHHH
Confidence 3456777776655432 233333333 2 24667777777777664 368999999999999876 99999999999
Q ss_pred HHHHHccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-----------------
Q 048749 163 LDVLGRARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSA----------------- 225 (536)
Q Consensus 163 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~----------------- 225 (536)
+.+|++.|++++|.++|++|.. +|..+||++|.+|++.|++++|+++|++|.+.|+.||..+
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~-~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPE-RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCC-CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 9999999999999999999984 8999999999999999999999999999988777666554
Q ss_pred ------------------HHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048749 226 ------------------FQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSK 287 (536)
Q Consensus 226 ------------------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 287 (536)
|+.|+.+|++.|++++|.++|+.|. ++|..+||.||.+|++.|++++|.++|++|.+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g 320 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 4667788889999999999999886 4589999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 048749 288 CEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNS 367 (536)
Q Consensus 288 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 367 (536)
+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|++||++|++.|++++|.++|++|.+ ||..+||+
T Consensus 321 ~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~ 396 (697)
T PLN03081 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNA 396 (697)
T ss_pred CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999864 68899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCC---ChHHHHHHHHHH-CCCCCCHHHHHHHHHHHHc
Q 048749 368 LIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKP---EEVPWVLERMER-NGCKMSTDTYNVILKLYVN 443 (536)
Q Consensus 368 li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~---~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~ 443 (536)
||.+|++.|+.++|.++|++|.+.| +.||..||+.++.+|++. +++.++|+.|.+ .|+.|+..+|+.++++|++
T Consensus 397 lI~~y~~~G~~~~A~~lf~~M~~~g--~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r 474 (697)
T PLN03081 397 LIAGYGNHGRGTKAVEMFERMIAEG--VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR 474 (697)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh
Confidence 9999999999999999999999988 899999999999999655 566788889976 6999999999999999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc-HHHHHHHHHHHHhhhhhhhhhH
Q 048749 444 WDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPE-PRTGILVNDMNIKLKERGEQGK 522 (536)
Q Consensus 444 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l~~~~~~~~~~~~a~~ 522 (536)
.|++++|.+++++| ++.|+..+|++|+.+|..+|+++.|..+++++.+ +.|+ ..+|..++.++.+.|+.++|.+
T Consensus 475 ~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~ 549 (697)
T PLN03081 475 EGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAK 549 (697)
T ss_pred cCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHH
Confidence 99999999988765 5789999999999999999999999999998864 5665 5679999999999999999999
Q ss_pred HHHHhhhccCCC
Q 048749 523 KVIKLTSLGLKG 534 (536)
Q Consensus 523 ~~~~~~~~g~~p 534 (536)
.+.+|.+.|++.
T Consensus 550 v~~~m~~~g~~k 561 (697)
T PLN03081 550 VVETLKRKGLSM 561 (697)
T ss_pred HHHHHHHcCCcc
Confidence 999999999864
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-56 Score=468.40 Aligned_cols=396 Identities=17% Similarity=0.213 Sum_probs=350.7
Q ss_pred HHHHHHHHhhCCCCCh----hHHHHHHhhcCCCCCHHHHHHHHHhc--cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 048749 91 AINVQNILKTCSVSTK----GEIEKALNQCELTLTDDLIVNVINRY--RFDWEAAYTFFKWVSREGDYSPGSNVFNAILD 164 (536)
Q Consensus 91 ~~~~~~~l~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 164 (536)
...+..++..+...+. ..+...+...|..++..+...++..+ .|+++.|.++|+.|. .||..+||.+|.
T Consensus 123 ~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-----~~~~~t~n~li~ 197 (697)
T PLN03081 123 ASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP-----ERNLASWGTIIG 197 (697)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC-----CCCeeeHHHHHH
Confidence 4455556655443321 44455556678888877666665543 369999999999984 368899999999
Q ss_pred HHHccCCHHHHHHHHHhCC---C-----------------------------------CCCHHHHHHHHHHHHhcCCHHH
Q 048749 165 VLGRARRFVELIQVFDEMP---D-----------------------------------LVNEKTYGILLNRYAAAHMVEE 206 (536)
Q Consensus 165 ~~~~~g~~~~A~~~~~~~~---~-----------------------------------~~~~~~~~~li~~~~~~g~~~~ 206 (536)
+|++.|++++|.++|++|. . .+|..+|++||.+|++.|++++
T Consensus 198 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~ 277 (697)
T PLN03081 198 GLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIED 277 (697)
T ss_pred HHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHH
Confidence 9999999999999999985 1 2455677889999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh-cCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048749 207 AIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESE-KNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIK 285 (536)
Q Consensus 207 A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 285 (536)
|.++|++|. .+|..+|+.++.+|++.|+.++|.++|++| ..++.||..+|+.++.+|++.|++++|.+++..|.+
T Consensus 278 A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~ 353 (697)
T PLN03081 278 ARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR 353 (697)
T ss_pred HHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 999999996 479999999999999999999999999998 568999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 048749 286 SKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTY 365 (536)
Q Consensus 286 ~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 365 (536)
.|+.||..+|++||.+|++.|++++|.++|++|.+ ||..+||+||.+|++.|+.++|+++|++|.+.|+.||..||
T Consensus 354 ~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~ 429 (697)
T PLN03081 354 TGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTF 429 (697)
T ss_pred hCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHH
Confidence 99999999999999999999999999999999964 69999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 048749 366 NSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWD 445 (536)
Q Consensus 366 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 445 (536)
+++|.+|++.|.+++|.++|+.|.+..+ +.|+..+|+.++..+++.+...+.++.+.+.++.|+..+|++|+.+|...|
T Consensus 430 ~~ll~a~~~~g~~~~a~~~f~~m~~~~g-~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g 508 (697)
T PLN03081 430 LAVLSACRYSGLSEQGWEIFQSMSENHR-IKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHK 508 (697)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhcC-CCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999999987532 899999999999999998888887777788889999999999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHH
Q 048749 446 CEDKVRHTWEEMEKKGMGP-DQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPR 502 (536)
Q Consensus 446 ~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 502 (536)
+++.|..+++++.+. .| +..+|..|++.|++.|++++|.+++++|.++|+.+.+.
T Consensus 509 ~~~~a~~~~~~l~~~--~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g 564 (697)
T PLN03081 509 NLELGRLAAEKLYGM--GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPA 564 (697)
T ss_pred CcHHHHHHHHHHhCC--CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCC
Confidence 999999999999754 45 46799999999999999999999999999999875543
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.9e-24 Score=232.77 Aligned_cols=380 Identities=12% Similarity=0.060 Sum_probs=200.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048749 135 DWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFD 212 (536)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 212 (536)
+++.|.+.|+.+.+.. +.+..++..+...+.+.|++++|...|+++. .+.+...+..++..+...|++++|+++++
T Consensus 514 ~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 591 (899)
T TIGR02917 514 NPDDAIQRFEKVLTID--PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILN 591 (899)
T ss_pred CHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4444444444443321 2233444444444444444444444444433 23333344444444444444444444444
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 048749 213 RRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDS 292 (536)
Q Consensus 213 ~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 292 (536)
++.+.. +.+..+|..+..++.+.|++++|...|+.+....+.+...+..+...|.+.|++++|..+|+.+.+.. +.+.
T Consensus 592 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 669 (899)
T TIGR02917 592 EAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNT 669 (899)
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCH
Confidence 444322 33344444444444445555555554444332223344444444444445555555555554444332 2234
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048749 293 VTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHL 372 (536)
Q Consensus 293 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 372 (536)
.++..++..+...|++++|.++++.+.+.+ +.+...+..+...+.+.|++++|.+.|+.+...+ |+..++..+..++
T Consensus 670 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~ 746 (899)
T TIGR02917 670 EAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRAL 746 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHH
Confidence 444445555555555555555555554442 2234444555555555555555555555555442 2334444555555
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhc---CCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhH
Q 048749 373 CKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSL---KKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDK 449 (536)
Q Consensus 373 ~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 449 (536)
.+.|++++|.+.+.++.+.. +.+...+..+...+ ++.++|.+.++.+.+.. +.+..+++.+...+...|+ .+
T Consensus 747 ~~~g~~~~A~~~~~~~l~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~ 821 (899)
T TIGR02917 747 LASGNTAEAVKTLEAWLKTH---PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PR 821 (899)
T ss_pred HHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HH
Confidence 55566666666555555543 12333333333322 44455666666666543 3456666666666666666 66
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhhhhhhhhhHHHHHhh
Q 048749 450 VRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRTGILVNDMNIKLKERGEQGKKVIKLT 528 (536)
Q Consensus 450 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~~~~a~~~~~~~~ 528 (536)
|+..++++.+.. +-+..++..+...+...|++++|.++++++++.+.. ++.++..+...+.+.|+.++|.+.+.+|.
T Consensus 822 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 822 ALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 666666666542 224455666777777888888888888888876543 77777888888888888888888888774
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-23 Score=227.72 Aligned_cols=386 Identities=12% Similarity=0.054 Sum_probs=272.1
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048749 132 YRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIG 209 (536)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~ 209 (536)
..++++.|.+.|+.+.+.. +.+...+..+...+...|++++|.+.|+++. .+.+..++..+...+.+.|+.++|..
T Consensus 477 ~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 554 (899)
T TIGR02917 477 GKGDLAKAREAFEKALSIE--PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVA 554 (899)
T ss_pred hCCCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 3456666666666665542 3445556666666666666666666666665 44556666667777777777777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 048749 210 VFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCE 289 (536)
Q Consensus 210 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 289 (536)
+|+++.+.+ +.+...+..+...+.+.|++++|..+++.+....+.+...|..+..+|...|++++|...|+.+.+.. +
T Consensus 555 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 632 (899)
T TIGR02917 555 WLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-P 632 (899)
T ss_pred HHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 777766554 44555666677777777777777777777655556667777777777777777777777777776654 3
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048749 290 PDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLI 369 (536)
Q Consensus 290 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 369 (536)
.+...+..+..++.+.|++++|..+|+++.+.. +.+..++..++..+...|++++|.++++.+.+.+. .+...+..+.
T Consensus 633 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~ 710 (899)
T TIGR02917 633 DSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEG 710 (899)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHH
Confidence 455667777777777777777777777777642 33466777777777778888888888877776543 3566777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhc---CCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 048749 370 KHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSL---KKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDC 446 (536)
Q Consensus 370 ~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 446 (536)
..+.+.|++++|.+.|..+.... |+..++..+...+ ++.+++.+.++.+.+.. +.+...+..+...|...|+
T Consensus 711 ~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~ 785 (899)
T TIGR02917 711 DLYLRQKDYPAAIQAYRKALKRA----PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKD 785 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhC----CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 78888888888888888887765 3333444343333 55666777777776653 4577888888888888899
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhhhhhhhhhHHHHH
Q 048749 447 EDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRTGILVNDMNIKLKERGEQGKKVIK 526 (536)
Q Consensus 447 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~~~~a~~~~~~ 526 (536)
.++|.+.|+++.+.. +++...++.+...+...|+ ++|+.+++++.+.. .-++.++..+..++...|+.++|.+.+.+
T Consensus 786 ~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 862 (899)
T TIGR02917 786 YDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRK 862 (899)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999998888764 4567788888888888888 77888888888742 22345567788888888999999999988
Q ss_pred hhhcc
Q 048749 527 LTSLG 531 (536)
Q Consensus 527 ~~~~g 531 (536)
+.+.+
T Consensus 863 a~~~~ 867 (899)
T TIGR02917 863 AVNIA 867 (899)
T ss_pred HHhhC
Confidence 86654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-21 Score=192.71 Aligned_cols=301 Identities=15% Similarity=0.106 Sum_probs=227.1
Q ss_pred HHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcC
Q 048749 163 LDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDD---LSAFQNLLLWLCRYK 237 (536)
Q Consensus 163 i~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~ll~~~~~~~ 237 (536)
...+...|++++|...|+++. .+.+..++..+...+...|++++|+.+++.+.+.+..++ ..++..+...+.+.|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 334556677777777777776 445556777777777777788888877777776432221 245667777888888
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHhHHHH
Q 048749 238 HVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPD----SVTYATFVNALTKKGKLGTALR 313 (536)
Q Consensus 238 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~ 313 (536)
+++.|..+|+.+....+.+..+++.++..+.+.|++++|.+.++.+.+.+..++ ...+..+...+.+.|++++|.+
T Consensus 122 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 122 LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 888888888886554456777888888888888888888888888877653322 1235566777888899999999
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 048749 314 LFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNG 393 (536)
Q Consensus 314 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 393 (536)
.|+++.+.. +.+...+..+...+.+.|++++|.++|+++.+.+......+++.++.+|.+.|++++|...++++.+..
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~- 279 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY- 279 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 998888753 234567777888888999999999999988865433234667888889999999999999888887643
Q ss_pred CCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048749 394 SCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMI 473 (536)
Q Consensus 394 ~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 473 (536)
|+...+..++..+.+.|++++|..+++++.+. .|+..+++.++
T Consensus 280 -----------------------------------p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~ 322 (389)
T PRK11788 280 -----------------------------------PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLL 322 (389)
T ss_pred -----------------------------------CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHH
Confidence 23345577888899999999999999988876 68888998888
Q ss_pred HHHHh---cCCHHHHHHHHHHHHHCCCCCcHH
Q 048749 474 HGLYD---KGRLEDALSYFHEMRLKGMVPEPR 502 (536)
Q Consensus 474 ~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~ 502 (536)
..+.. .|+.++++.++++|.++++.|++.
T Consensus 323 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 323 DYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 87765 568899999999999988888876
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-20 Score=183.88 Aligned_cols=308 Identities=15% Similarity=0.081 Sum_probs=242.4
Q ss_pred hhcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCCCCCC------
Q 048749 114 NQCELTLTDDLIVNVINRYRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMPDLVN------ 187 (536)
Q Consensus 114 ~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------ 187 (536)
++....+....+..+.....++++.|+..|+.+.+.+ +.+..++..+...+.+.|++++|..+++.+...++
T Consensus 29 ~~~~~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 106 (389)
T PRK11788 29 QKESNRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQR 106 (389)
T ss_pred hhhhhhccHHHHHHHHHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHH
Confidence 3445566666777777666789999999999999864 45677899999999999999999999999872221
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCC-----HHHHHH
Q 048749 188 EKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYD-----IKTMNI 262 (536)
Q Consensus 188 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~ 262 (536)
...+..+...|.+.|++++|+++|+++.+.. +.+..++..++..+.+.|++++|.+.++.+....+.+ ...+..
T Consensus 107 ~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (389)
T PRK11788 107 LLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCE 185 (389)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 2568889999999999999999999999764 5677899999999999999999999999964432222 224567
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC
Q 048749 263 ILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKR 342 (536)
Q Consensus 263 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 342 (536)
+...+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......+++.++.+|.+.|+
T Consensus 186 la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 264 (389)
T PRK11788 186 LAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGD 264 (389)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCC
Confidence 7888899999999999999998764 345678888999999999999999999999886433234678899999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcC------CCChHH
Q 048749 343 IPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLK------KPEEVP 416 (536)
Q Consensus 343 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~------~~~~a~ 416 (536)
+++|...++++.+. .|+...+..++..+.+.|++++|..+++++.+.. |+..+++.++..+. +.+++.
T Consensus 265 ~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~----P~~~~~~~l~~~~~~~~~~g~~~~a~ 338 (389)
T PRK11788 265 EAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRRH----PSLRGFHRLLDYHLAEAEEGRAKESL 338 (389)
T ss_pred HHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhC----cCHHHHHHHHHHhhhccCCccchhHH
Confidence 99999999999876 4566677889999999999999999999988754 55555554443321 233444
Q ss_pred HHHHHHHHCCCCCCH
Q 048749 417 WVLERMERNGCKMST 431 (536)
Q Consensus 417 ~~~~~~~~~~~~~~~ 431 (536)
.+++.|.+.++.|++
T Consensus 339 ~~~~~~~~~~~~~~p 353 (389)
T PRK11788 339 LLLRDLVGEQLKRKP 353 (389)
T ss_pred HHHHHHHHHHHhCCC
Confidence 445555544444443
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.4e-17 Score=177.33 Aligned_cols=390 Identities=10% Similarity=0.020 Sum_probs=252.5
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC-CCC---CHHHHHH------------
Q 048749 130 NRYRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP-DLV---NEKTYGI------------ 193 (536)
Q Consensus 130 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~---~~~~~~~------------ 193 (536)
....++++.|+..|+.+.+.. +.+..++..+..+|.+.|++++|+..|++.. ..| ....|..
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence 334579999999999998864 5578899999999999999999999999876 222 2222322
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH
Q 048749 194 LLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNV 273 (536)
Q Consensus 194 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 273 (536)
....+.+.|++++|++.|++..+.. +.+...+..+...+...|++++|++.|++.....+.+...+..+...|. .++.
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~ 434 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSP 434 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCH
Confidence 2346778899999999999999875 4567778888999999999999999999965444555666655555553 2344
Q ss_pred HHHHHHHHHHHHCCC--------CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHH
Q 048749 274 YEAKRFWKDIIKSKC--------EPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPE 345 (536)
Q Consensus 274 ~~A~~~~~~m~~~g~--------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 345 (536)
++|..+++.+..... ......+..+...+...|++++|++.|++..+.. +-+...+..+...|.+.|++++
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 555555443321100 0001123333444445555555555555555431 1133344445555555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHH--------------------------------------------HHHHHHHhcCCHHHH
Q 048749 346 ALEVLREMKNRGCLPNVTTYN--------------------------------------------SLIKHLCKIKRMETV 381 (536)
Q Consensus 346 A~~~~~~m~~~g~~p~~~~~~--------------------------------------------~li~~~~~~~~~~~A 381 (536)
|...++++.+.... +...+. .+...+...|+.++|
T Consensus 514 A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 514 ADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 55555555432211 222222 233445556666666
Q ss_pred HHHHHHHHhcCCCCCCcHHH---HHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHH
Q 048749 382 YEYLDEMEQKNGSCLPNEIT---FNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEME 458 (536)
Q Consensus 382 ~~~~~~m~~~~~~~~p~~~~---~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 458 (536)
.++++. . ..+... ...+....++.++|.+.++...+.. +.+...+..++..|...|++++|++.++...
T Consensus 593 ~~~l~~----~---p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 593 EALLRQ----Q---PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HHHHHh----C---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 666551 1 112222 2222333467778888888888764 4468888899999999999999999999887
Q ss_pred HCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CC---cHHHHHHHHHHHHhhhhhhhhhHHHHH-hhhcc
Q 048749 459 KKGMGP-DQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGM--VP---EPRTGILVNDMNIKLKERGEQGKKVIK-LTSLG 531 (536)
Q Consensus 459 ~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p---~~~t~~~l~~~~~~~~~~~~a~~~~~~-~~~~g 531 (536)
+. .| +...+..+..++...|++++|.+++++++...- .| +...+..+..++...|+.++|.+.+++ |...|
T Consensus 665 ~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~ 742 (1157)
T PRK11447 665 AT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASG 742 (1157)
T ss_pred cc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Confidence 64 33 455677778888899999999999999887532 22 223456667888899999999999888 44456
Q ss_pred CCCC
Q 048749 532 LKGN 535 (536)
Q Consensus 532 ~~p~ 535 (536)
+.|.
T Consensus 743 ~~~~ 746 (1157)
T PRK11447 743 ITPT 746 (1157)
T ss_pred CCCC
Confidence 6553
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6e-17 Score=167.43 Aligned_cols=316 Identities=10% Similarity=0.017 Sum_probs=220.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048749 133 RFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGV 210 (536)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~ 210 (536)
.|+++.|+.+++.+.... +-+...+..++..+...|++++|...|+++. .+.+...|..+...+.+.|++++|++.
T Consensus 55 ~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~ 132 (656)
T PRK15174 55 KDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADL 132 (656)
T ss_pred cCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 368889998888887763 4456667777777778999999999999887 667777888888888999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 048749 211 FDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEP 290 (536)
Q Consensus 211 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 290 (536)
|++..+.. +.+...+..+...+...|++++|...++.+....+.+...+..++ .+...|++++|...++.+.+....+
T Consensus 133 l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~ 210 (656)
T PRK15174 133 AEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALE 210 (656)
T ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 99888753 455677888888888999999998888876443344444554443 4778899999999988887664334
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHH----HHHHHHHHHHCCCCCCHHHHH
Q 048749 291 DSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPE----ALEVLREMKNRGCLPNVTTYN 366 (536)
Q Consensus 291 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~~~~ 366 (536)
+...+..+..++...|++++|+..++++.+.. +.+...+..+...+...|++++ |...|++..+.... +...+.
T Consensus 211 ~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~ 288 (656)
T PRK15174 211 RQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVT 288 (656)
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHH
Confidence 44455556677888899999999999888763 3356677788888888898885 78888888775432 577888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHH-HHH---HHHHhcCCCChHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 048749 367 SLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEI-TFN---YLLKSLKKPEEVPWVLERMERNGCKMS-TDTYNVILKLY 441 (536)
Q Consensus 367 ~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~-~~~---~ll~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~ 441 (536)
.+...+.+.|++++|...+++..+.. |+.. .+. .++...++.++|...++.+.+.. |+ ...+..+..++
T Consensus 289 ~lg~~l~~~g~~~eA~~~l~~al~l~----P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al 362 (656)
T PRK15174 289 LYADALIRTGQNEKAIPLLQQSLATH----PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAAL 362 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHH
Confidence 88888889999999999998888755 3311 111 11112234444444444444321 12 12222334445
Q ss_pred HccCChhHHHHHHHHHHHC
Q 048749 442 VNWDCEDKVRHTWEEMEKK 460 (536)
Q Consensus 442 ~~~g~~~~A~~~~~~m~~~ 460 (536)
...|+.++|...|++..+.
T Consensus 363 ~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 363 LQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHCCCHHHHHHHHHHHHHh
Confidence 5555555555555555543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.3e-17 Score=167.27 Aligned_cols=327 Identities=11% Similarity=0.012 Sum_probs=263.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 048749 158 VFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCR 235 (536)
Q Consensus 158 ~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 235 (536)
-...++..+.+.|++++|..+++... .+.+...+..++.+....|++++|++.|+++.+.. +.+...+..+...+..
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLK 122 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 34556778889999999999999887 56667788888888999999999999999999875 5667788889999999
Q ss_pred cCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 048749 236 YKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLF 315 (536)
Q Consensus 236 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 315 (536)
.|++++|...+++.....+.+...+..+...+...|++++|...++.+..... .+...+..+ ..+...|++++|...+
T Consensus 123 ~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 123 SKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHHHHH
Confidence 99999999999997655567888999999999999999999999998876642 233344333 3478899999999999
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhc
Q 048749 316 QAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMET----VYEYLDEMEQK 391 (536)
Q Consensus 316 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~----A~~~~~~m~~~ 391 (536)
+.+.+....++...+..+..++.+.|++++|+..++++.+.... +...+..+...|...|++++ |...|++..+.
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 99887643344555566678889999999999999999876533 67788889999999999986 89999999886
Q ss_pred CCCCCCc-HHHHH---HHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHH
Q 048749 392 NGSCLPN-EITFN---YLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQR 467 (536)
Q Consensus 392 ~~~~~p~-~~~~~---~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 467 (536)
. |+ ...+. .++...++.++|...++...+.. +.+...+..+...|.+.|++++|...++++.+. .|+..
T Consensus 280 ~----P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~ 352 (656)
T PRK15174 280 N----SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTS 352 (656)
T ss_pred C----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Cccch
Confidence 5 43 33333 33444477788888888888764 445677888899999999999999999999876 45543
Q ss_pred H-HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048749 468 S-YTVMIHGLYDKGRLEDALSYFHEMRLK 495 (536)
Q Consensus 468 ~-~~~li~~~~~~g~~~~A~~~~~~m~~~ 495 (536)
. +..+..++...|+.++|...|++..+.
T Consensus 353 ~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 353 KWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3 334567788999999999999999875
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.6e-16 Score=162.19 Aligned_cols=81 Identities=10% Similarity=0.042 Sum_probs=71.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048749 133 RFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGV 210 (536)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~ 210 (536)
.++++.|+..|+.+++. .|+...|..+..+|.+.|++++|++.++... .+.+...|..+..+|...|++++|+.-
T Consensus 140 ~~~~~~Ai~~y~~al~~---~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~ 216 (615)
T TIGR00990 140 NKDFNKAIKLYSKAIEC---KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLD 216 (615)
T ss_pred cCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 47999999999999874 4678889999999999999999999999987 667788999999999999999999987
Q ss_pred HHHHHH
Q 048749 211 FDRRKE 216 (536)
Q Consensus 211 ~~~m~~ 216 (536)
|.....
T Consensus 217 ~~~~~~ 222 (615)
T TIGR00990 217 LTASCI 222 (615)
T ss_pred HHHHHH
Confidence 765543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-15 Score=169.12 Aligned_cols=359 Identities=11% Similarity=0.055 Sum_probs=233.2
Q ss_pred HHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHH------------HHH
Q 048749 165 VLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELD-DLSAF------------QNL 229 (536)
Q Consensus 165 ~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~------------~~l 229 (536)
.+...|++++|+..|++.. .+.+...+..+...+.+.|++++|+..|++..+..-.. ....+ ...
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 3455677777777776665 44566667777777777777777777777766543111 11111 112
Q ss_pred HHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHh
Q 048749 230 LLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLG 309 (536)
Q Consensus 230 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 309 (536)
...+.+.|++++|...|++.....+.+...+..+...+...|++++|++.|++..+.. +.+...+..+...+. .++.+
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~ 435 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPE 435 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHH
Confidence 3345566777777777776544445556666666777777777777777777766543 233445555555553 34566
Q ss_pred HHHHHHHHHHHcCCC--------CCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048749 310 TALRLFQAMWEKGRK--------PDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETV 381 (536)
Q Consensus 310 ~a~~~~~~m~~~g~~--------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A 381 (536)
+|+.+++.+...... .....+..+...+...|++++|++.|++..+.... +...+..+...|.+.|++++|
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 666666554322100 01123445566778899999999999999886433 567788899999999999999
Q ss_pred HHHHHHHHhcCCCCCCcHH-HHHHHHHhcCCCChHHHHHHHHH----------------------------HC-------
Q 048749 382 YEYLDEMEQKNGSCLPNEI-TFNYLLKSLKKPEEVPWVLERME----------------------------RN------- 425 (536)
Q Consensus 382 ~~~~~~m~~~~~~~~p~~~-~~~~ll~~~~~~~~a~~~~~~~~----------------------------~~------- 425 (536)
...++++.+..+ ..|+.. .+..++...++.++|...++.+. ..
T Consensus 515 ~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~ 593 (1157)
T PRK11447 515 DALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAE 593 (1157)
T ss_pred HHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHH
Confidence 999999987552 122211 11111111122222222221110 00
Q ss_pred ----CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc-
Q 048749 426 ----GCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPE- 500 (536)
Q Consensus 426 ----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~- 500 (536)
..+.+...+..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|++.++...+. .|+
T Consensus 594 ~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~ 670 (1157)
T PRK11447 594 ALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDS 670 (1157)
T ss_pred HHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCC
Confidence 124556677788899999999999999999999863 336788999999999999999999999987753 454
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHhhhc
Q 048749 501 PRTGILVNDMNIKLKERGEQGKKVIKLTSL 530 (536)
Q Consensus 501 ~~t~~~l~~~~~~~~~~~~a~~~~~~~~~~ 530 (536)
..+...+..++...|+.++|.+.+.++.+.
T Consensus 671 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 671 LNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 444667788888999999999999987543
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-17 Score=157.75 Aligned_cols=354 Identities=12% Similarity=0.047 Sum_probs=181.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC-CCCCH-HHHHHHHHHHHhcCCHHHHHHHH
Q 048749 134 FDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP-DLVNE-KTYGILLNRYAAAHMVEEAIGVF 211 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~-~~~~~li~~~~~~g~~~~A~~~~ 211 (536)
|+.+.|+..+..+++.. +.....|..+..+|...|+.+.|.+.|.+.. ..|+. ...+-+...+-..|++++|...|
T Consensus 130 g~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred chHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHH
Confidence 45555555555555542 2234555555555555555555555555443 12222 22222333333455555555555
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 048749 212 DRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPD 291 (536)
Q Consensus 212 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 291 (536)
.+.++.. +-=..+|..|...+-..|+...|.+.|++...--+--...|..|...|...+.+++|...+....... +-.
T Consensus 208 lkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~ 285 (966)
T KOG4626|consen 208 LKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNH 285 (966)
T ss_pred HHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccc
Confidence 5555432 11233455555555555666666655555433223334455555566656666666665555544332 223
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048749 292 SVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPD-VVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIK 370 (536)
Q Consensus 292 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 370 (536)
.+.+..|...|...|.+|.|+..|++..+. .|+ ...|+.|..++-..|++.+|++.+++....... .....+.|..
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgn 362 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGN 362 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHH
Confidence 445555555566666666666666665553 222 345666666666666666666666665544211 3445555666
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChhH
Q 048749 371 HLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMS-TDTYNVILKLYVNWDCEDK 449 (536)
Q Consensus 371 ~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~ 449 (536)
.|...|.+++|..+|....+-.+.+..-.....+++.--++.++|...+++... +.|+ ...|+.+...|-..|+++.
T Consensus 363 i~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~ 440 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSA 440 (966)
T ss_pred HHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHH
Confidence 666666666666666665553311111111122333333445555555554443 2333 3556666666666666666
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc
Q 048749 450 VRHTWEEMEKKGMGPD-QRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPE 500 (536)
Q Consensus 450 A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 500 (536)
|.+.+.+.... .|. ....+.|...|-..|++.+|+.-+++.++ ++||
T Consensus 441 A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPD 488 (966)
T KOG4626|consen 441 AIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPD 488 (966)
T ss_pred HHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCC
Confidence 66666555543 333 34455566666666666666666665554 4444
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.6e-17 Score=151.66 Aligned_cols=397 Identities=12% Similarity=0.071 Sum_probs=320.5
Q ss_pred CHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 048749 121 TDDLIVNVINRYRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRY 198 (536)
Q Consensus 121 ~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~ 198 (536)
..-.+++.+.....+.+...+.-...++.. +.-..+|..+.+++-..|++.+|+.+++.+. .+.....|..+..++
T Consensus 83 ~~llll~ai~~q~~r~d~s~a~~~~a~r~~--~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al 160 (966)
T KOG4626|consen 83 ERLLLLSAIFFQGSRLDKSSAGSLLAIRKN--PQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAAL 160 (966)
T ss_pred cceeeehhhhhcccchhhhhhhhhhhhhcc--chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHH
Confidence 334555555555557777766666666653 4567899999999999999999999999988 667788999999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048749 199 AAAHMVEEAIGVFDRRKEFGELDDLSAF-QNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAK 277 (536)
Q Consensus 199 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 277 (536)
...|+.+.|.+.|.+.++. .|+.... ..+...+...|++++|...+.+.....+--..+|+.|...+-..|++..|+
T Consensus 161 ~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~ai 238 (966)
T KOG4626|consen 161 VTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAI 238 (966)
T ss_pred HhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHH
Confidence 9999999999999998875 4665544 445566667899999999988854433455678999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048749 278 RFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRG 357 (536)
Q Consensus 278 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 357 (536)
+.|++..+.+ +--...|-.|...|...+.+++|...|.+.... -+.....+..+...|...|.++.|++.+++..+.
T Consensus 239 q~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l-rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~- 315 (966)
T KOG4626|consen 239 QHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNL-RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL- 315 (966)
T ss_pred HHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc-CCcchhhccceEEEEeccccHHHHHHHHHHHHhc-
Confidence 9999998764 223568999999999999999999999988774 2234667888888899999999999999999876
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHh---cCCCChHHHHHHHHHHCCCCCCHHH
Q 048749 358 CLPN-VTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKS---LKKPEEVPWVLERMERNGCKMSTDT 433 (536)
Q Consensus 358 ~~p~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~---~~~~~~a~~~~~~~~~~~~~~~~~~ 433 (536)
.|+ ...|+.|..++-..|++.+|.+.|.+...-.+ -.....+-|-.. .++.++|..++....+.. +-=...
T Consensus 316 -~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p---~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa 390 (966)
T KOG4626|consen 316 -QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCP---NHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAA 390 (966)
T ss_pred -CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCC---ccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhh
Confidence 455 67899999999999999999999999988652 122334444333 478899999888777642 222567
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHH-HHHHHHHHH
Q 048749 434 YNVILKLYVNWDCEDKVRHTWEEMEKKGMGPD-QRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPR-TGILVNDMN 511 (536)
Q Consensus 434 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~l~~~~ 511 (536)
++.|...|-.+|++++|+..+++..+- .|+ ...|+.+-..|-..|+.+.|...+.+.+. +.|.-. ....|..++
T Consensus 391 ~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~ 466 (966)
T KOG4626|consen 391 HNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIY 466 (966)
T ss_pred hhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHh
Confidence 889999999999999999999999874 676 46899999999999999999999999886 567644 488999999
Q ss_pred HhhhhhhhhhHHHHHhhhccCCCC
Q 048749 512 IKLKERGEQGKKVIKLTSLGLKGN 535 (536)
Q Consensus 512 ~~~~~~~~a~~~~~~~~~~g~~p~ 535 (536)
...|...+|...++.. +.++||
T Consensus 467 kDsGni~~AI~sY~~a--LklkPD 488 (966)
T KOG4626|consen 467 KDSGNIPEAIQSYRTA--LKLKPD 488 (966)
T ss_pred hccCCcHHHHHHHHHH--HccCCC
Confidence 9999999999999987 445665
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-15 Score=160.02 Aligned_cols=408 Identities=10% Similarity=0.011 Sum_probs=246.9
Q ss_pred HHHHHHHHHhhCCCCChhHHHHHHhhcC-CCCCHH---HHHHHHHhccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 048749 90 IAINVQNILKTCSVSTKGEIEKALNQCE-LTLTDD---LIVNVINRYRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDV 165 (536)
Q Consensus 90 ~~~~~~~~l~~~~~~~~~~~~~~l~~~~-~~~~~~---~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 165 (536)
.+.+|..+..-.... .++........ ..+.+. ..+..+....++++.|.++++.+.... +.+...+..+..+
T Consensus 17 ~~~d~~~ia~~~g~~--~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~ 92 (765)
T PRK10049 17 QIADWLQIALWAGQD--AEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGLILT 92 (765)
T ss_pred HHHHHHHHHHHcCCH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 455555555433322 33434443332 222222 333334444568888888888877753 4566677777788
Q ss_pred HHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048749 166 LGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAE 243 (536)
Q Consensus 166 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~ 243 (536)
+.+.|++++|+..+++.. .+.+.. +..+..++...|+.++|+..++++.+.. +.+...+..+..++...+..+.|.
T Consensus 93 l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al 170 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPAL 170 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHH
Confidence 888888888888888876 555666 7777778888888888888888888754 445556666777777778888888
Q ss_pred HHHHHhcCCCCCCH------HHHHHHHHHHH-----hcCCH---HHHHHHHHHHHHC-CCCCCHH-HH----HHHHHHHH
Q 048749 244 TFFESEKNEFGYDI------KTMNIILNGWC-----VLGNV---YEAKRFWKDIIKS-KCEPDSV-TY----ATFVNALT 303 (536)
Q Consensus 244 ~~~~~~~~~~~~~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~~~~~-~~----~~li~~~~ 303 (536)
..++.... .|+. .....++..+. ..+++ ++|++.++.+.+. ...|+.. .+ ...+.++.
T Consensus 171 ~~l~~~~~--~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll 248 (765)
T PRK10049 171 GAIDDANL--TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALL 248 (765)
T ss_pred HHHHhCCC--CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHH
Confidence 77776543 2221 11222222222 12233 6677777777653 1122221 11 11133455
Q ss_pred hcCCHhHHHHHHHHHHHcCCC-CCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHH
Q 048749 304 KKGKLGTALRLFQAMWEKGRK-PDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLP---NVTTYNSLIKHLCKIKRME 379 (536)
Q Consensus 304 ~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~li~~~~~~~~~~ 379 (536)
..|++++|+..|+.+.+.+-. |+. ....+..+|...|++++|+..|+++.+..... ....+..+..++...|+++
T Consensus 249 ~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 249 ARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred HhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence 668888888888888776432 222 22224667888888888888888876543211 1344556666778888888
Q ss_pred HHHHHHHHHHhcCC---------CCCCcHH------HHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 048749 380 TVYEYLDEMEQKNG---------SCLPNEI------TFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNW 444 (536)
Q Consensus 380 ~A~~~~~~m~~~~~---------~~~p~~~------~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 444 (536)
+|.++++.+....+ ...|+.. ....++..-++.++|.++++.+.... +-+...+..+...+...
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~ 406 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQAR 406 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 88888888776531 0112211 11222333366677777777766543 44566777777777777
Q ss_pred CChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHH
Q 048749 445 DCEDKVRHTWEEMEKKGMGPD-QRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRTGILVNDMN 511 (536)
Q Consensus 445 g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~ 511 (536)
|++++|++.+++..+. .|+ ...+..+...+...|++++|+.+++++++ ..|+......+....
T Consensus 407 g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 407 GWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDPGVQRLARAR 470 (765)
T ss_pred CCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 7777777777777765 344 45555566667777777777777777776 356655544444433
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.2e-15 Score=155.81 Aligned_cols=400 Identities=12% Similarity=0.032 Sum_probs=299.0
Q ss_pred CCCHHHHHHHHHh--ccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHH
Q 048749 119 TLTDDLIVNVINR--YRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGIL 194 (536)
Q Consensus 119 ~~~~~~~~~~l~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l 194 (536)
..++..+...+.- ..|+.+.|++++..+.... +.+...+..+...+.+.|++++|.++|++.. .+.+...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 4555555444332 3479999999999998632 4567789999999999999999999999976 56778889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 048749 195 LNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVY 274 (536)
Q Consensus 195 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 274 (536)
...+...|++++|+..+++..+.. +.+.. +..+..++...|+.++|...+++.....+.+...+..+...+...|..+
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChH
Confidence 999999999999999999998864 55566 8888899999999999999999976666778888888888999999999
Q ss_pred HHHHHHHHHHHCCCCCC------HHHHHHHHHHHH-----hcCCH---hHHHHHHHHHHHc-CCCCCHh-hHH----HHH
Q 048749 275 EAKRFWKDIIKSKCEPD------SVTYATFVNALT-----KKGKL---GTALRLFQAMWEK-GRKPDVV-TCN----CII 334 (536)
Q Consensus 275 ~A~~~~~~m~~~g~~~~------~~~~~~li~~~~-----~~g~~---~~a~~~~~~m~~~-g~~p~~~-~~~----~li 334 (536)
.|++.++.... .|+ ......++.... ..+++ ++|++.++.+.+. ...|+.. .+. ..+
T Consensus 168 ~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l 244 (765)
T PRK10049 168 PALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRL 244 (765)
T ss_pred HHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHH
Confidence 99999886653 221 112333333333 22334 7889999998864 2333321 111 113
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC-cHHHHHHHHHhc---
Q 048749 335 DALCFKKRIPEALEVLREMKNRGCL-PNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLP-NEITFNYLLKSL--- 409 (536)
Q Consensus 335 ~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p-~~~~~~~ll~~~--- 409 (536)
.++...|++++|+..|+.+.+.+.. |+.. -..+...|...|++++|...|+++.+..+...+ .......+..++
T Consensus 245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~ 323 (765)
T PRK10049 245 GALLARDRYKDVISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLES 323 (765)
T ss_pred HHHHHhhhHHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc
Confidence 3456779999999999999887632 3322 222567899999999999999998876531111 123344443333
Q ss_pred CCCChHHHHHHHHHHCC-----------CCCC---HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048749 410 KKPEEVPWVLERMERNG-----------CKMS---TDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHG 475 (536)
Q Consensus 410 ~~~~~a~~~~~~~~~~~-----------~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 475 (536)
++.++|...++.+.+.. -.|+ ...+..+...+...|+.++|+++++++.... +-+...+..+...
T Consensus 324 g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l 402 (765)
T PRK10049 324 ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASV 402 (765)
T ss_pred ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 67778888888887642 1123 2356677888999999999999999998763 4457788899999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCcH-HHHHHHHHHHHhhhhhhhhhHHHHHhhh
Q 048749 476 LYDKGRLEDALSYFHEMRLKGMVPEP-RTGILVNDMNIKLKERGEQGKKVIKLTS 529 (536)
Q Consensus 476 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~l~~~~~~~~~~~~a~~~~~~~~~ 529 (536)
+...|++++|++.+++.++. .||. .........+...++.++|.+.+.++.+
T Consensus 403 ~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 403 LQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999999999874 5774 4467777788889999999999998854
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.9e-14 Score=147.07 Aligned_cols=395 Identities=11% Similarity=0.089 Sum_probs=244.3
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHhCCCCCCHHHHHHH--HHHHHh
Q 048749 124 LIVNVINRYRFDWEAAYTFFKWVSREGDYSPGS-NVFNAILDVLGRARRFVELIQVFDEMPDLVNEKTYGIL--LNRYAA 200 (536)
Q Consensus 124 ~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l--i~~~~~ 200 (536)
....++....|+++.|+..|+.+.+.. +.+. .++ .++..++..|+.++|+..+++...+.+...+..+ ...+..
T Consensus 38 y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~ 114 (822)
T PRK14574 38 YDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRN 114 (822)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence 334444444566677777777766643 2221 233 6666666667777777777666522222233333 446666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048749 201 AHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFW 280 (536)
Q Consensus 201 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 280 (536)
.|++++|+++|+++.+.. +.+...+..++..+...++.++|++.++.+... .|+...+..++..+...++..+|++.+
T Consensus 115 ~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~-dp~~~~~l~layL~~~~~~~~~AL~~~ 192 (822)
T PRK14574 115 EKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER-DPTVQNYMTLSYLNRATDRNYDALQAS 192 (822)
T ss_pred cCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc-CcchHHHHHHHHHHHhcchHHHHHHHH
Confidence 677777777777766654 334555556666666667777777766665443 233333433333333345554566666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHhH------------------------------------------------HH
Q 048749 281 KDIIKSKCEPDSVTYATFVNALTKKGKLGT------------------------------------------------AL 312 (536)
Q Consensus 281 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~------------------------------------------------a~ 312 (536)
+++.+.. +-+...+..++.++.+.|-... |+
T Consensus 193 ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~al 271 (822)
T PRK14574 193 SEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKAL 271 (822)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHH
Confidence 6666654 3344444444455444443333 33
Q ss_pred HHHHHHHHc-CCCCCH-hh----HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048749 313 RLFQAMWEK-GRKPDV-VT----CNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLD 386 (536)
Q Consensus 313 ~~~~~m~~~-g~~p~~-~~----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~ 386 (536)
.-++.+... +..|.. .. ..-.+-++.+.|++.++++.|+.+...|.+....+-..+.++|...+++++|..+|.
T Consensus 272 a~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~ 351 (822)
T PRK14574 272 ADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILS 351 (822)
T ss_pred HHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 333333331 111221 11 123345677888999999999999888766555677788899999999999999999
Q ss_pred HHHhcCCC---CCCcHHHHHHHHHhc---CCCChHHHHHHHHHHCCC-----------CC--CH-HHHHHHHHHHHccCC
Q 048749 387 EMEQKNGS---CLPNEITFNYLLKSL---KKPEEVPWVLERMERNGC-----------KM--ST-DTYNVILKLYVNWDC 446 (536)
Q Consensus 387 ~m~~~~~~---~~p~~~~~~~ll~~~---~~~~~a~~~~~~~~~~~~-----------~~--~~-~~~~~li~~~~~~g~ 446 (536)
.+....+. ..++......|..++ .+.++|..+++.+.+... .| |- ..+..++..+...|+
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gd 431 (822)
T PRK14574 352 SLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALND 431 (822)
T ss_pred HHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCC
Confidence 88665421 122333345666666 556677788888876311 12 21 234456677888999
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcH-HHHHHHHHHHHhhhhhhhhhHHHH
Q 048749 447 EDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEP-RTGILVNDMNIKLKERGEQGKKVI 525 (536)
Q Consensus 447 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~l~~~~~~~~~~~~a~~~~~ 525 (536)
+.+|++.++++.... +-|...+..+.+.+...|.+.+|++.++.... +.|+. .+...........+++.+|.+.+.
T Consensus 432 l~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~al~l~e~~~A~~~~~ 508 (822)
T PRK14574 432 LPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAETAMALQEWHQMELLTD 508 (822)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 999999999987653 44778888888899999999999999976665 35654 447778888888899988888887
Q ss_pred Hh
Q 048749 526 KL 527 (536)
Q Consensus 526 ~~ 527 (536)
++
T Consensus 509 ~l 510 (822)
T PRK14574 509 DV 510 (822)
T ss_pred HH
Confidence 76
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.8e-14 Score=148.16 Aligned_cols=354 Identities=13% Similarity=0.029 Sum_probs=225.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048749 133 RFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGV 210 (536)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~ 210 (536)
.++++.|++.++.+.+.. +.+..+|..+..+|...|++++|+.-|.... ...+......++..+........+...
T Consensus 173 l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~ 250 (615)
T TIGR00990 173 LGDWEKVVEDTTAALELD--PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEI 250 (615)
T ss_pred hCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999864 5578899999999999999999998776554 112211111111111111001111111
Q ss_pred HHHHHH--------------c-------------CCCCCH-HHHHHHHHH---HHhcCCHHHHHHHHHHhcC-C--CCCC
Q 048749 211 FDRRKE--------------F-------------GELDDL-SAFQNLLLW---LCRYKHVEVAETFFESEKN-E--FGYD 256 (536)
Q Consensus 211 ~~~m~~--------------~-------------g~~~~~-~~~~~ll~~---~~~~~~~~~a~~~~~~~~~-~--~~~~ 256 (536)
++.-.. . ...+.. ..+..+... ....+++++|...|+.... + .+..
T Consensus 251 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~ 330 (615)
T TIGR00990 251 LETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKE 330 (615)
T ss_pred HhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhh
Confidence 110000 0 000000 000000000 0123567888888887432 1 2334
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 048749 257 IKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDA 336 (536)
Q Consensus 257 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 336 (536)
...|+.+...+...|++++|+..|++..+.. +-+...|..+...+...|++++|...|++..+.. +.+..+|..+...
T Consensus 331 a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~ 408 (615)
T TIGR00990 331 AIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQL 408 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 5567777777888888888888888877653 2335577777788888888888888888877752 3356677778888
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHH---HHHhcCCCC
Q 048749 337 LCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNY---LLKSLKKPE 413 (536)
Q Consensus 337 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~---ll~~~~~~~ 413 (536)
+...|++++|...|++..+.... +...+..+...+.+.|++++|+..|++.....+ .+...++. ++...++.+
T Consensus 409 ~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P---~~~~~~~~lg~~~~~~g~~~ 484 (615)
T TIGR00990 409 HFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP---EAPDVYNYYGELLLDQNKFD 484 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHccCHH
Confidence 88888888888888888765422 466677777788888888888888888876542 12233332 333346667
Q ss_pred hHHHHHHHHHHCCCCCCH------HHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048749 414 EVPWVLERMERNGCKMST------DTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALS 487 (536)
Q Consensus 414 ~a~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 487 (536)
+|.+.++...+.....+. ..++..+..+...|++++|.+++++..+.. +.+...+..+...+.+.|++++|++
T Consensus 485 ~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~ 563 (615)
T TIGR00990 485 EAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALK 563 (615)
T ss_pred HHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHH
Confidence 777777776654321111 112223333445799999999999988764 2244578889999999999999999
Q ss_pred HHHHHHHC
Q 048749 488 YFHEMRLK 495 (536)
Q Consensus 488 ~~~~m~~~ 495 (536)
+|++..+.
T Consensus 564 ~~e~A~~l 571 (615)
T TIGR00990 564 LFERAAEL 571 (615)
T ss_pred HHHHHHHH
Confidence 99998765
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.8e-14 Score=126.33 Aligned_cols=318 Identities=13% Similarity=0.222 Sum_probs=183.4
Q ss_pred HHHHHHhhCCCCChhHHHHHHhhcCCCCCHHHHHHHHHh---c-cCCHHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 048749 93 NVQNILKTCSVSTKGEIEKALNQCELTLTDDLIVNVINR---Y-RFDWEAA-YTFFKWVSREGDYSPGSNVFNAILDVLG 167 (536)
Q Consensus 93 ~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~---~-~~~~~~a-~~~~~~~~~~~~~~~~~~~~~~li~~~~ 167 (536)
.+..++.+....+..-+.+.+++.|+.+++..-+.+++- + ..++--| .+-|-.+.+.+ .-+..+|
T Consensus 121 nL~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~--E~S~~sW-------- 190 (625)
T KOG4422|consen 121 NLLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG--EDSTSSW-------- 190 (625)
T ss_pred HHHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc--ccccccc--------
Confidence 444555554444445667777778888887766665543 1 1122211 22222222221 1122222
Q ss_pred ccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048749 168 RARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFE 247 (536)
Q Consensus 168 ~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 247 (536)
+.|.+.+ -+|+.. +.+..+|.+||.++|+--..+.|.++|++......+.+..+||.+|.+-.-... .+++.
T Consensus 191 K~G~vAd--L~~E~~--PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~ 262 (625)
T KOG4422|consen 191 KSGAVAD--LLFETL--PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVA 262 (625)
T ss_pred ccccHHH--HHHhhc--CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHH
Confidence 3344433 334443 355567777888777777777777777777776667777777777765443322 44555
Q ss_pred Hh-cCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhH-HHHHHHHHHHc
Q 048749 248 SE-KNEFGYDIKTMNIILNGWCVLGNVYE----AKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGT-ALRLFQAMWEK 321 (536)
Q Consensus 248 ~~-~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~ 321 (536)
+| ...+.||..|+|+++.+.++.|+++. |.+++.+|.+.|+.|...+|..+|..+++.++..+ +..++.++...
T Consensus 263 EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ 342 (625)
T KOG4422|consen 263 EMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNS 342 (625)
T ss_pred HHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHh
Confidence 54 44567778888888877777777664 45566777777777877777777777777766543 33444444332
Q ss_pred --C--CC----CCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHH
Q 048749 322 --G--RK----PDVVTCNCIIDALCFKKRIPEALEVLREMKNRG----CLPN---VTTYNSLIKHLCKIKRMETVYEYLD 386 (536)
Q Consensus 322 --g--~~----p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~---~~~~~~li~~~~~~~~~~~A~~~~~ 386 (536)
| ++ .|...|...+..|.+..+.+-|.++..-+.... +.|+ ..-|..+....|+....+.-+..|+
T Consensus 343 ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~ 422 (625)
T KOG4422|consen 343 LTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYE 422 (625)
T ss_pred hccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 22 244556666777777777777776665553221 1222 2234555666666667777777777
Q ss_pred HHHhcCCCCCCcHHHHHHHHHhc---CCCChHHHHHHHHHHCCCCCC
Q 048749 387 EMEQKNGSCLPNEITFNYLLKSL---KKPEEVPWVLERMERNGCKMS 430 (536)
Q Consensus 387 ~m~~~~~~~~p~~~~~~~ll~~~---~~~~~a~~~~~~~~~~~~~~~ 430 (536)
.|.-.- ..|+..+...++++. ++.+-.-++|..++..|...+
T Consensus 423 ~lVP~~--y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r 467 (625)
T KOG4422|consen 423 DLVPSA--YFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFR 467 (625)
T ss_pred Hhccce--ecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhh
Confidence 776555 556666666666654 233344455555555543333
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.1e-12 Score=132.21 Aligned_cols=395 Identities=12% Similarity=0.094 Sum_probs=288.1
Q ss_pred hHHHHHHhhcC--CCCCHHHHH--HHHHhccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhC
Q 048749 107 GEIEKALNQCE--LTLTDDLIV--NVINRYRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEM 182 (536)
Q Consensus 107 ~~~~~~l~~~~--~~~~~~~~~--~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 182 (536)
.++...+++.- ...+...++ ..+....++++.|+++++.+.+.. +.++..+..++..+.+.++.++|++.++++
T Consensus 85 ~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l 162 (822)
T PRK14574 85 QEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATEL 162 (822)
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHh
Confidence 45555555542 344455555 346666689999999999999875 566788888899999999999999999999
Q ss_pred C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHH-
Q 048749 183 P-DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTM- 260 (536)
Q Consensus 183 ~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~- 260 (536)
. ..++...+-.++..+...++..+|++.++++.+.. +.+...+..+..++.+.|-...|.++..+-..-+.+....+
T Consensus 163 ~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l 241 (822)
T PRK14574 163 AERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL 241 (822)
T ss_pred cccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH
Confidence 8 44555555444444444566666999999999875 56677888999999999999999988877554443333222
Q ss_pred -----HHHHHHH-----HhcCC---HHHHHHHHHHHHHC-CCCCCH-H----HHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 048749 261 -----NIILNGW-----CVLGN---VYEAKRFWKDIIKS-KCEPDS-V----TYATFVNALTKKGKLGTALRLFQAMWEK 321 (536)
Q Consensus 261 -----~~li~~~-----~~~g~---~~~A~~~~~~m~~~-g~~~~~-~----~~~~li~~~~~~g~~~~a~~~~~~m~~~ 321 (536)
..+++.- ....+ .+.|+.-++.+... +-.|.. . ...-.+-++...|+..++++.|+.+...
T Consensus 242 ~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~ 321 (822)
T PRK14574 242 ERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAE 321 (822)
T ss_pred HHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhc
Confidence 1111110 01122 34455555555542 222322 2 2234566788999999999999999999
Q ss_pred CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---
Q 048749 322 GRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRG-----CLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNG--- 393 (536)
Q Consensus 322 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~--- 393 (536)
|.+...++-..+.++|...+++++|+.+|..+.... ..++......|.-+|...+++++|..+++++.+..+
T Consensus 322 ~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~ 401 (822)
T PRK14574 322 GYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQV 401 (822)
T ss_pred CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEE
Confidence 877667788999999999999999999999986542 223455567899999999999999999999988432
Q ss_pred --------CCCCcHHHHHHHHHh----cCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCC
Q 048749 394 --------SCLPNEITFNYLLKS----LKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKG 461 (536)
Q Consensus 394 --------~~~p~~~~~~~ll~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 461 (536)
...||...+-.+... .++..+|++.++.+.... +-|......+.+.+...|.+.+|.+.++.....
T Consensus 402 ~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l- 479 (822)
T PRK14574 402 GVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL- 479 (822)
T ss_pred eccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-
Confidence 133455555433332 378899999999997764 668999999999999999999999999877765
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHH
Q 048749 462 MGP-DQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRTGILVND 509 (536)
Q Consensus 462 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~ 509 (536)
.| +..+......++...|++++|..+.+...+ ..|+......+..
T Consensus 480 -~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~--~~Pe~~~~~~l~r 525 (822)
T PRK14574 480 -APRSLILERAQAETAMALQEWHQMELLTDDVIS--RSPEDIPSQELDR 525 (822)
T ss_pred -CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--hCCCchhHHHHHH
Confidence 44 456677788888899999999999999887 4676665444444
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-11 Score=131.49 Aligned_cols=381 Identities=11% Similarity=0.059 Sum_probs=260.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048749 133 RFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGR-ARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVF 211 (536)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 211 (536)
.++|+.|++.+..+.+.+ +.+..-...+..+|.+ .++ +++..+++.. ...+...+..+...|.+.|+.++|.+++
T Consensus 195 l~dw~~Ai~lL~~L~k~~--pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~-lk~d~~l~~ala~~yi~~G~~~~A~~~L 270 (987)
T PRK09782 195 LKQWSQADTLYNEARQQN--TLSAAERRQWFDVLLAGQLD-DRLLALQSQG-IFTDPQSRITYATALAYRGEKARLQHYL 270 (987)
T ss_pred HhCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhhCH-HHHHHHhchh-cccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 468888888888888875 4455556667777776 366 7777776542 2357778888888888888888888888
Q ss_pred HHHHHcCCC-CCHHHHHHH------------------------------HHHH---------------------------
Q 048749 212 DRRKEFGEL-DDLSAFQNL------------------------------LLWL--------------------------- 233 (536)
Q Consensus 212 ~~m~~~g~~-~~~~~~~~l------------------------------l~~~--------------------------- 233 (536)
+++...-.. |...++.-+ +..+
T Consensus 271 ~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 350 (987)
T PRK09782 271 IENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYA 350 (987)
T ss_pred HhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHh
Confidence 876543211 222222111 1112
Q ss_pred ------------------------------------HhcCCHHHHHHHHHHhcC---CCCCCHHHHHHHHHHHHhcCC--
Q 048749 234 ------------------------------------CRYKHVEVAETFFESEKN---EFGYDIKTMNIILNGWCVLGN-- 272 (536)
Q Consensus 234 ------------------------------------~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~-- 272 (536)
.+.|+.++|..+++..-. ....+....+.++..|.+.+.
T Consensus 351 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 430 (987)
T PRK09782 351 VSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLA 430 (987)
T ss_pred hccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCccc
Confidence 334455555555555321 111234445566666666555
Q ss_pred -HHHHHHH----------------------HHHHHHC-CC-CC--CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC
Q 048749 273 -VYEAKRF----------------------WKDIIKS-KC-EP--DSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKP 325 (536)
Q Consensus 273 -~~~A~~~----------------------~~~m~~~-g~-~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 325 (536)
..+|..+ .+..... +. ++ +...|..+..++.. ++.++|...+.+.... .|
T Consensus 431 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~P 507 (987)
T PRK09782 431 TPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QP 507 (987)
T ss_pred chHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CC
Confidence 2222222 1111110 11 23 55666777766665 7888899877777764 36
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHH
Q 048749 326 DVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYL 405 (536)
Q Consensus 326 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~l 405 (536)
+......+...+...|++++|...|+++... .|+...+..+..++.+.|+.++|...+++..+.. ..+...+..+
T Consensus 508 d~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~---P~~~~l~~~L 582 (987)
T PRK09782 508 DAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG---LGDNALYWWL 582 (987)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CccHHHHHHH
Confidence 6555444555567899999999999988654 3445556677788899999999999999998765 1223333344
Q ss_pred HHhc---CCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048749 406 LKSL---KKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRL 482 (536)
Q Consensus 406 l~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 482 (536)
.... ++.++|...++...+. .|+...+..+...+.+.|+.++|...+++..+.. +-+...++.+..++...|++
T Consensus 583 a~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~ 659 (987)
T PRK09782 583 HAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDI 659 (987)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCH
Confidence 4455 8888999888888875 3568889999999999999999999999999873 23566778888899999999
Q ss_pred HHHHHHHHHHHHCCCCCc-HHHHHHHHHHHHhhhhhhhhhHHHHHhhhc
Q 048749 483 EDALSYFHEMRLKGMVPE-PRTGILVNDMNIKLKERGEQGKKVIKLTSL 530 (536)
Q Consensus 483 ~~A~~~~~~m~~~g~~p~-~~t~~~l~~~~~~~~~~~~a~~~~~~~~~~ 530 (536)
++|+..+++.++. .|+ +..+..+..++...|+.++|...+.+..+.
T Consensus 660 eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 660 AQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9999999999874 564 555889999999999999999999887443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-12 Score=118.69 Aligned_cols=338 Identities=12% Similarity=0.116 Sum_probs=249.9
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 048749 153 SPGSNVFNAILDVLGRARRFVELIQVFDEMP---DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNL 229 (536)
Q Consensus 153 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 229 (536)
+-+..++..||..+++--..+.|.+++++.. ...+..+||.+|.+-.-..+ .++..+|....+.||..|||++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHH
Confidence 4577899999999999999999999999877 66888899999987554332 7889999999999999999999
Q ss_pred HHHHHhcCCHHHHHH----HHHHhc-CCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHC--C--C---CC-CHHHH
Q 048749 230 LLWLCRYKHVEVAET----FFESEK-NEFGYDIKTMNIILNGWCVLGNVYE-AKRFWKDIIKS--K--C---EP-DSVTY 295 (536)
Q Consensus 230 l~~~~~~~~~~~a~~----~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~--g--~---~~-~~~~~ 295 (536)
+.+..+.|+++.|.. ++.+|+ -|+.|...+|..+|..+++.++..+ |..++.++... | + .| |..-|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 999999998887654 445553 4789999999999999999888754 55555555431 2 2 22 34557
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcC----CCCC---HhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048749 296 ATFVNALTKKGKLGTALRLFQAMWEKG----RKPD---VVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSL 368 (536)
Q Consensus 296 ~~li~~~~~~g~~~~a~~~~~~m~~~g----~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 368 (536)
...+..|.+..+.+.|.++..-+.... +.|+ ..-|..+....|+....+.-...|+.|.-.-+-|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 778888999999999988876655431 2232 234667788888889999999999999877777888888889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCC---------h--------HHH-------HHHHHHH
Q 048749 369 IKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPE---------E--------VPW-------VLERMER 424 (536)
Q Consensus 369 i~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~---------~--------a~~-------~~~~~~~ 424 (536)
+++..-.|.++-.-+++.+++.-| ..-+...-..++.-+++.. + |.. .-.++.+
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~g--ht~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~ 517 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYG--HTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA 517 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence 999999999999999999988877 2222222222222222110 0 001 1122333
Q ss_pred CCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 048749 425 NGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGM----GPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMV 498 (536)
Q Consensus 425 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 498 (536)
........+.+...+.+.|..++|.+++..+.+.+- .|.......+++.-.+.++.-.|..+++-|...+..
T Consensus 518 --~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 518 --QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred --ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch
Confidence 345567788888899999999999999999976543 234444556777778889999999999999876653
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-11 Score=131.58 Aligned_cols=311 Identities=12% Similarity=0.036 Sum_probs=191.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCCC-C----CCHHHHHHHHHHHHhcCC---HHH
Q 048749 135 DWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMPD-L----VNEKTYGILLNRYAAAHM---VEE 206 (536)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~----~~~~~~~~li~~~~~~g~---~~~ 206 (536)
...++.+....+.+.. +-+....-.+.-...+.|+.++|.++|+.... . .+....+-++..|.+.+. ..+
T Consensus 357 ~~~~~~~~~~~~y~~~--~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 434 (987)
T PRK09782 357 NKAEALRLARLLYQQE--PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAK 434 (987)
T ss_pred chhHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHH
Confidence 4444544455555542 33566666666666777888888888877651 1 233344466666666655 333
Q ss_pred HHHH----------------------HHHHHH-cCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHH
Q 048749 207 AIGV----------------------FDRRKE-FGE-LD--DLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTM 260 (536)
Q Consensus 207 A~~~----------------------~~~m~~-~g~-~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 260 (536)
++.+ ++.... .+. ++ +...|..+..++.. ++.++|...+...... .|+....
T Consensus 435 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~-~Pd~~~~ 512 (987)
T PRK09782 435 VAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR-QPDAWQH 512 (987)
T ss_pred HHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh-CCchHHH
Confidence 3222 111111 111 34 67778888877776 7888898877774332 2454444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 048749 261 NIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFK 340 (536)
Q Consensus 261 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 340 (536)
..+...+...|++++|...|+++... +|+...+..+..++.+.|++++|...++...+.. +.+...+..+.....+.
T Consensus 513 L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~ 589 (987)
T PRK09782 513 RAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIP 589 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhC
Confidence 44455556899999999999987654 4555566777788889999999999999998864 22333333344444566
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHH----HHHHhcCCCChHH
Q 048749 341 KRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFN----YLLKSLKKPEEVP 416 (536)
Q Consensus 341 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~----~ll~~~~~~~~a~ 416 (536)
|++++|...+++..+. .|+...|..+...+.+.|++++|...|.+..... |+...+. .++...++.+++.
T Consensus 590 Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~----Pd~~~a~~nLG~aL~~~G~~eeAi 663 (987)
T PRK09782 590 GQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE----PNNSNYQAALGYALWDSGDIAQSR 663 (987)
T ss_pred CCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999876 4678888889999999999999999999998865 4321111 1111223333444
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 048749 417 WVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEK 459 (536)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 459 (536)
..++...+.. +-+...+..+..++...|++++|...+++..+
T Consensus 664 ~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 664 EMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4444443322 22344444445555555555555555554444
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.1e-12 Score=127.85 Aligned_cols=412 Identities=12% Similarity=0.116 Sum_probs=257.2
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHhcc---CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--
Q 048749 109 IEKALNQCELTLTDDLIVNVINRYR---FDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP-- 183 (536)
Q Consensus 109 ~~~~l~~~~~~~~~~~~~~~l~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-- 183 (536)
+.++|+-.+..++....++++.... ..+..++..+..+-..+ ..++.+.+.|.+.|.-.|++..++.+.+.+.
T Consensus 222 ~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n--~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~ 299 (1018)
T KOG2002|consen 222 FERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN--NENPVALNHLANHFYFKKDYERVWHLAEHAIKN 299 (1018)
T ss_pred HHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc--CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 3444444443333334444443322 24566777777776654 4567778888888888888888888777765
Q ss_pred ---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHH
Q 048749 184 ---DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTM 260 (536)
Q Consensus 184 ---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 260 (536)
...-..+|-.+.++|-..|++++|...|.+..+..-.-....+..+...+.+.|+++.+...|+.+....+.+..+.
T Consensus 300 t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm 379 (1018)
T KOG2002|consen 300 TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETM 379 (1018)
T ss_pred hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHH
Confidence 12333457777888888888888888887666543111134455677778888888888888888765556667777
Q ss_pred HHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH----HcCCCCCHhhHHH
Q 048749 261 NIILNGWCVLG----NVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMW----EKGRKPDVVTCNC 332 (536)
Q Consensus 261 ~~li~~~~~~g----~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~g~~p~~~~~~~ 332 (536)
..|...|+..+ ..+.|..++....+.- +.|...|-.+...+....-+. ++.+|.... ..+-.+.+...|.
T Consensus 380 ~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~~~~ip~E~LNN 457 (1018)
T KOG2002|consen 380 KILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWA-SLDAYGNALDILESKGKQIPPEVLNN 457 (1018)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHcCCCCCHHHHHh
Confidence 77777776654 3455555555554433 345556665555554433332 255544433 3344466667777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC---CCCCCH------H-HHH-------------------H-------HHHHHHhc-
Q 048749 333 IIDALCFKKRIPEALEVLREMKNR---GCLPNV------T-TYN-------------------S-------LIKHLCKI- 375 (536)
Q Consensus 333 li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~------~-~~~-------------------~-------li~~~~~~- 375 (536)
+...+...|++.+|...|...... -..+|. . -|| . .|.+|.+.
T Consensus 458 vaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~ 537 (1018)
T KOG2002|consen 458 VASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLG 537 (1018)
T ss_pred HHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhh
Confidence 777777777777777777666433 111111 1 111 1 13333333
Q ss_pred ------CCHHHHHHHHHHHHhcCCCCCCcHHHHHH------------------H--------------------HHhcCC
Q 048749 376 ------KRMETVYEYLDEMEQKNGSCLPNEITFNY------------------L--------------------LKSLKK 411 (536)
Q Consensus 376 ------~~~~~A~~~~~~m~~~~~~~~p~~~~~~~------------------l--------------------l~~~~~ 411 (536)
+...+|...++.....+. ..|+..++-. + +.++.+
T Consensus 538 ~ma~~k~~~~ea~~~lk~~l~~d~-~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~ 616 (1018)
T KOG2002|consen 538 CMARDKNNLYEASLLLKDALNIDS-SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHN 616 (1018)
T ss_pred HHHHhccCcHHHHHHHHHHHhccc-CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcc
Confidence 455566666666554432 3344443321 1 111111
Q ss_pred -----------CChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048749 412 -----------PEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKG 480 (536)
Q Consensus 412 -----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 480 (536)
.+.|.++|..+.+.. +-|...-|-+.-.++.+|++.+|..+|.+..+... -+..+|-.+.++|...|
T Consensus 617 ~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~ 694 (1018)
T KOG2002|consen 617 PSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQG 694 (1018)
T ss_pred cccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHH
Confidence 123445555555543 44677778888888999999999999999988643 24567888999999999
Q ss_pred CHHHHHHHHHHHHHCCC-CCcHHHHHHHHHHHHhhhhhhhhhHHHHHh
Q 048749 481 RLEDALSYFHEMRLKGM-VPEPRTGILVNDMNIKLKERGEQGKKVIKL 527 (536)
Q Consensus 481 ~~~~A~~~~~~m~~~g~-~p~~~t~~~l~~~~~~~~~~~~a~~~~~~~ 527 (536)
++..|+++|+...++-. .-++.....|.+++.+.|...++.+.+.+.
T Consensus 695 qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a 742 (1018)
T KOG2002|consen 695 QYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKA 742 (1018)
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999999998777644 345556899999999999999888887765
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.2e-12 Score=124.79 Aligned_cols=282 Identities=10% Similarity=0.035 Sum_probs=190.1
Q ss_pred cCCHHHHHHHHHhCCC-CCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCCHHHHHH
Q 048749 169 ARRFVELIQVFDEMPD-LVNEKTYGIL-LNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQ--NLLLWLCRYKHVEVAET 244 (536)
Q Consensus 169 ~g~~~~A~~~~~~~~~-~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~--~ll~~~~~~~~~~~a~~ 244 (536)
.|+++.|++.+..... ..+...+-.+ ..+..+.|+++.|.+.|.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 5888888887777652 2222233233 33446778888888888888764 34443222 33556777888888888
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHhHHHHHHHH
Q 048749 245 FFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDS-------VTYATFVNALTKKGKLGTALRLFQA 317 (536)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~ 317 (536)
.++.+....+.+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++.
T Consensus 175 ~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 175 GVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 888876665667778888888888888888888888888776643222 1233333333334444555555555
Q ss_pred HHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC
Q 048749 318 MWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLP 397 (536)
Q Consensus 318 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p 397 (536)
+.+. .+.++.....+...+...|+.++|.+++++..+. .++.... ++.+....++.+++.+..+...+..
T Consensus 255 lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~----- 324 (398)
T PRK10747 255 QSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH----- 324 (398)
T ss_pred CCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-----
Confidence 4332 3346666777777777778888887777777664 3343211 2333344577777777777776654
Q ss_pred cHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048749 398 NEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLY 477 (536)
Q Consensus 398 ~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 477 (536)
+-|...+..+...|.+.|++++|.+.|+...+. .|+..++..+...+.
T Consensus 325 ------------------------------P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~ 372 (398)
T PRK10747 325 ------------------------------GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALD 372 (398)
T ss_pred ------------------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHH
Confidence 336777888889999999999999999998876 688888888889999
Q ss_pred hcCCHHHHHHHHHHHHH
Q 048749 478 DKGRLEDALSYFHEMRL 494 (536)
Q Consensus 478 ~~g~~~~A~~~~~~m~~ 494 (536)
+.|+.++|.+++++-..
T Consensus 373 ~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 373 RLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HcCCHHHHHHHHHHHHh
Confidence 99999999998887654
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.6e-11 Score=118.82 Aligned_cols=393 Identities=12% Similarity=0.058 Sum_probs=281.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048749 133 RFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGV 210 (536)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~ 210 (536)
+|+.+.|.+++..++++. +.+...|..|..+|-+.|+.+++...+-... .+.|..-|-.+.....+.|++++|.-.
T Consensus 152 rg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred hCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 479999999999999885 6678889999999999999999887766555 677888899999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048749 211 FDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIK-----TMNIILNGWCVLGNVYEAKRFWKDIIK 285 (536)
Q Consensus 211 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~ 285 (536)
|.+.++.. +++...+-.-...|-+.|+...|..-|.++-.-.+|... .--.+++.+...++-+.|.+.++....
T Consensus 230 y~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 230 YSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99988876 555555556677788889998888888886544343222 223345556667777888888877765
Q ss_pred CC-CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-----------------------------------------
Q 048749 286 SK-CEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGR----------------------------------------- 323 (536)
Q Consensus 286 ~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~----------------------------------------- 323 (536)
.+ -..+...++.++..+.+...++.|......+.....
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~ 388 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLV 388 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhh
Confidence 21 233445666777777777777777766666655110
Q ss_pred ----------------------CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048749 324 ----------------------KPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETV 381 (536)
Q Consensus 324 ----------------------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A 381 (536)
.-+...|.-+..+|...|++.+|+.+|..+......-+...|-.+..+|...|.+++|
T Consensus 389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 0122345667788999999999999999998775555788999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHccCChhHHHHH
Q 048749 382 YEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERME--------RNGCKMSTDTYNVILKLYVNWDCEDKVRHT 453 (536)
Q Consensus 382 ~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 453 (536)
.+.|.......+...-..++..++....++.++|.+.++.+. ..+..|+........+.+.+.|+.++-..+
T Consensus 469 ~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t 548 (895)
T KOG2076|consen 469 IEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINT 548 (895)
T ss_pred HHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 999999998764333445778888888899999988888743 234556666656666677777776654433
Q ss_pred HHHHHHCC--------------------------------------------------CCC-----------CH----HH
Q 048749 454 WEEMEKKG--------------------------------------------------MGP-----------DQ----RS 468 (536)
Q Consensus 454 ~~~m~~~g--------------------------------------------------~~p-----------~~----~~ 468 (536)
-..|...+ ..+ +. ..
T Consensus 549 ~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel 628 (895)
T KOG2076|consen 549 ASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFEL 628 (895)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHH
Confidence 33222110 000 01 12
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCcHH----HHHHHHHHHHhhhhhhhhhHHHHHhh
Q 048749 469 YTVMIHGLYDKGRLEDALSYFHEMRLKGM-VPEPR----TGILVNDMNIKLKERGEQGKKVIKLT 528 (536)
Q Consensus 469 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~----t~~~l~~~~~~~~~~~~a~~~~~~~~ 528 (536)
+..++.++++.|++++|+.+...+..... .-++. .-.+.+.+++..+++..+...++.|.
T Consensus 629 ~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i 693 (895)
T KOG2076|consen 629 FRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVI 693 (895)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 34566778888999999999888887642 22332 14566777778888888888887763
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.9e-12 Score=123.19 Aligned_cols=62 Identities=6% Similarity=0.014 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048749 432 DTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMR 493 (536)
Q Consensus 432 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 493 (536)
....++...|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++-.
T Consensus 336 ~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 336 CINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55667777778888888888888753333336777777777778888888888888777653
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.3e-14 Score=132.60 Aligned_cols=252 Identities=16% Similarity=0.128 Sum_probs=92.9
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048749 132 YRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIG 209 (536)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~ 209 (536)
..++++.|++++........-+.|...|..+.......++++.|++.++++. ...+...+..++.. ...+++++|.+
T Consensus 20 ~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~ 98 (280)
T PF13429_consen 20 QRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALK 98 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc
Confidence 3467788888775433221013355556666666667777888888887777 33445556666666 67777888877
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhc--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048749 210 VFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEK--NEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSK 287 (536)
Q Consensus 210 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 287 (536)
++.+..+.. ++...+..++..+.+.++++.+..+++.+. ...+.+...|..+...+.+.|+.++|++.+++..+..
T Consensus 99 ~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~ 176 (280)
T PF13429_consen 99 LAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD 176 (280)
T ss_dssp ---------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-
T ss_pred ccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 776655432 455566667777777788888777777742 2335667777777777778888888888887777664
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 048749 288 CEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNS 367 (536)
Q Consensus 288 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 367 (536)
+-|......++..+...|+.+++.+++....+.. +.|...+..+..+|...|+.++|+..|++..+... .|......
T Consensus 177 -P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p-~d~~~~~~ 253 (280)
T PF13429_consen 177 -PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP-DDPLWLLA 253 (280)
T ss_dssp -TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST-T-HHHHHH
T ss_pred -CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccc-cccccccc
Confidence 3346667777777777787777777777766653 44556667777777788888888888887766422 26666677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 048749 368 LIKHLCKIKRMETVYEYLDEME 389 (536)
Q Consensus 368 li~~~~~~~~~~~A~~~~~~m~ 389 (536)
+..++...|+.++|.++..+..
T Consensus 254 ~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 254 YADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHT----------------
T ss_pred cccccccccccccccccccccc
Confidence 7777777888888877776653
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.8e-11 Score=118.92 Aligned_cols=290 Identities=11% Similarity=0.004 Sum_probs=191.1
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 048749 200 AAHMVEEAIGVFDRRKEFGELDD-LSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYD-IKTMNIILNGWCVLGNVYEAK 277 (536)
Q Consensus 200 ~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~ 277 (536)
..|+++.|.+.+.+..+.. |+ ...+-....+..+.|+.+.|.+.+....+..+.+ ....-.....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 4577777777776665543 33 2333344556667777777777777753332222 223333466677788888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHH---HhcCChHHHHHHHHHHH
Q 048749 278 RFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDAL---CFKKRIPEALEVLREMK 354 (536)
Q Consensus 278 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~---~~~g~~~~A~~~~~~m~ 354 (536)
..++.+.+.. +-+...+..+...+...|++++|.+++..+.+.+..++......-..++ ...+..+++.+.+..+.
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 8888887765 4456677777888888888888888888888776543222211111211 22233333344555554
Q ss_pred HCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCH
Q 048749 355 NRGC---LPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMST 431 (536)
Q Consensus 355 ~~g~---~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~ 431 (536)
+... +.+...+..+...+...|+.++|.+++++..+.. ||... .
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~----pd~~~-----------------------------~ 299 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL----GDDRA-----------------------------I 299 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC----CCccc-----------------------------c
Confidence 4321 1277888889999999999999999999998865 33210 0
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHH
Q 048749 432 DTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQ---RSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRTGILVN 508 (536)
Q Consensus 432 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~ 508 (536)
.............++.+.+.+.++...+. .|+. ....++...|.+.|++++|.++|+........||+.++..+.
T Consensus 300 ~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La 377 (409)
T TIGR00540 300 SLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAA 377 (409)
T ss_pred hhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHH
Confidence 00111111222345667788888877765 3443 456688899999999999999999655555689999999999
Q ss_pred HHHHhhhhhhhhhHHHHHh
Q 048749 509 DMNIKLKERGEQGKKVIKL 527 (536)
Q Consensus 509 ~~~~~~~~~~~a~~~~~~~ 527 (536)
..+.+.|+.++|.+.+++-
T Consensus 378 ~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 378 DAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999884
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.2e-11 Score=117.82 Aligned_cols=250 Identities=9% Similarity=0.016 Sum_probs=168.2
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCCCHHHH--HHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHH
Q 048749 131 RYRFDWEAAYTFFKWVSREGDYSPGSNVF--NAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEE 206 (536)
Q Consensus 131 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~ 206 (536)
...|+++.|.+.+..+.+. .|+.... ......+...|++++|...++++. .+.+...+..+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~---~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL---ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHH
Confidence 3456788888888877664 2443322 233567777888888888887776 55667777778888888888888
Q ss_pred HHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048749 207 AIGVFDRRKEFGELDDL-------SAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRF 279 (536)
Q Consensus 207 A~~~~~~m~~~g~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 279 (536)
|.+++..+.+.+..++. .+|..++.......+.+...++++.+....+.+......+...+...|+.++|.++
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~ 285 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQI 285 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 88888888776644322 12333343334445556666666666555566777777788888888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 048749 280 WKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCL 359 (536)
Q Consensus 280 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 359 (536)
+++..+. ++|... .++.+....++.+++++..+...+. .+-|...+..+...|.+.|++++|.+.|+.+.+. .
T Consensus 286 L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~-~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~ 358 (398)
T PRK10747 286 ILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ-HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--R 358 (398)
T ss_pred HHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--C
Confidence 8777663 344421 1233334557777888877777765 2335556777777788888888888888877765 5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048749 360 PNVTTYNSLIKHLCKIKRMETVYEYLDEMEQ 390 (536)
Q Consensus 360 p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 390 (536)
|+..+|..+...+.+.|+.++|.+++++...
T Consensus 359 P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 359 PDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7777777777888888888888887776543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.4e-14 Score=131.76 Aligned_cols=258 Identities=14% Similarity=0.112 Sum_probs=101.1
Q ss_pred HHHHHHHccCCHHHHHHHHHhC-C-C--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 048749 161 AILDVLGRARRFVELIQVFDEM-P-D--LVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRY 236 (536)
Q Consensus 161 ~li~~~~~~g~~~~A~~~~~~~-~-~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 236 (536)
.+..++.+.|++++|++++++. . . +.+...|..+.......++++.|++.|+++...+ +-+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 5678888899999999999553 3 2 3455666777777778888999999999988766 3356667677766 688
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 048749 237 KHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSK-CEPDSVTYATFVNALTKKGKLGTALRLF 315 (536)
Q Consensus 237 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~ 315 (536)
+++++|..+++..-+. .++...+..++..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.++|++.+
T Consensus 91 ~~~~~A~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER-DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccc-ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888887764222 2466667778888888888888888888876543 3456777888888888888888888888
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 048749 316 QAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSC 395 (536)
Q Consensus 316 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~ 395 (536)
++..+.. +.|......++..+...|+.+++.++++...+.. +.|...+..+..+|...|+.++|+.+|++..+..
T Consensus 170 ~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~--- 244 (280)
T PF13429_consen 170 RKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN--- 244 (280)
T ss_dssp HHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS---
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc---
Confidence 8888852 2246677788888888888888888887776543 3355567788888888888888888888887755
Q ss_pred CCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHH
Q 048749 396 LPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEME 458 (536)
Q Consensus 396 ~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 458 (536)
+.|......+.+++...|+.++|.++.++..
T Consensus 245 --------------------------------p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 245 --------------------------------PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp --------------------------------TT-HHHHHHHHHHHT----------------
T ss_pred --------------------------------ccccccccccccccccccccccccccccccc
Confidence 2356666677777777777777777766544
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.4e-11 Score=104.36 Aligned_cols=298 Identities=15% Similarity=0.117 Sum_probs=203.9
Q ss_pred HHHHHHHHHhhCCCCChhHHHHHHhhcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCC--HHHHHHHHHHHH
Q 048749 90 IAINVQNILKTCSVSTKGEIEKALNQCELTLTDDLIVNVINRYRFDWEAAYTFFKWVSREGDYSPG--SNVFNAILDVLG 167 (536)
Q Consensus 90 ~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~ 167 (536)
-+..++-++..........+.++++..+..+...+.++-|.+.+|..+.|+++++-+.+.+++.-+ ..+.-.|..-|.
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym 118 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYM 118 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Confidence 455666677666655556677777777777777888888888888999999999998877644333 234556667788
Q ss_pred ccCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHH
Q 048749 168 RARRFVELIQVFDEMPD--LVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDL----SAFQNLLLWLCRYKHVEV 241 (536)
Q Consensus 168 ~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~ll~~~~~~~~~~~ 241 (536)
..|-++.|+++|..+.+ ..-......|+..|-...+|++|+++-+++.+.|-.+.. ..|.-|...+....+++.
T Consensus 119 ~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~ 198 (389)
T COG2956 119 AAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDR 198 (389)
T ss_pred HhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHH
Confidence 88999999999988872 344567888889999999999999998888877644442 244555555566677888
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 048749 242 AETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEK 321 (536)
Q Consensus 242 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 321 (536)
|..++.+....-+..+.+-..+.+.+...|+++.|.+.++...+.+..--..+...|..+|.+.|+.++....+..+.+.
T Consensus 199 A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 199 ARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 88888775433344555566667777888888888888888877654444556677778888888888888888887775
Q ss_pred CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhc
Q 048749 322 GRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCK---IKRMETVYEYLDEMEQK 391 (536)
Q Consensus 322 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~---~~~~~~A~~~~~~m~~~ 391 (536)
...++ .-..+...-....-.+.|..++.+-..+ +|+...+..+|..-.. -|...+-+.+++.|...
T Consensus 279 ~~g~~--~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 279 NTGAD--AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred cCCcc--HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 33322 3333333333344455555555544443 5788888888875543 23455566666666544
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.3e-10 Score=113.96 Aligned_cols=362 Identities=14% Similarity=0.093 Sum_probs=234.7
Q ss_pred HHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 048749 161 AILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKH 238 (536)
Q Consensus 161 ~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 238 (536)
...+.+.-.|++++|.+++.++. .+.....|-+|...|-+.|+.++++..+-..-... +.|...|..+.....+.|.
T Consensus 144 ~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 144 GEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGN 222 (895)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhccc
Confidence 33344444599999999999987 77888899999999999999999988775544433 5667888889999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHhcCCHhHHHHH
Q 048749 239 VEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTY----ATFVNALTKKGKLGTALRL 314 (536)
Q Consensus 239 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~----~~li~~~~~~g~~~~a~~~ 314 (536)
++.|.-+|.+..+.-+++....---+..|-+.|+...|..-|.++.....+.|..-+ -.++..+...++-+.|++.
T Consensus 223 i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 223 INQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999999965555778777777788888999999999999999876533333222 2345566677777888888
Q ss_pred HHHHHHc-CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH--------------------------HH
Q 048749 315 FQAMWEK-GRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTY--------------------------NS 367 (536)
Q Consensus 315 ~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~--------------------------~~ 367 (536)
++..... +-..+...++.++..|.+...++.|......+......+|..-| --
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r 382 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR 382 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh
Confidence 8887763 22335556788888899999999998888877663222322221 01
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhc---CCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 048749 368 LIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSL---KKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNW 444 (536)
Q Consensus 368 li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 444 (536)
++-++...+..+....+.....+....+.-+...|.-+..++ ++..+|..++..+.....--+...|--+..+|...
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence 222333344444444444444444411122233344444555 34455556666666544444566777777777777
Q ss_pred CChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH--------HCCCCCcHHHHHHHHHHHHhhh
Q 048749 445 DCEDKVRHTWEEMEKKGMGPD-QRSYTVMIHGLYDKGRLEDALSYFHEMR--------LKGMVPEPRTGILVNDMNIKLK 515 (536)
Q Consensus 445 g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~g~~p~~~t~~~l~~~~~~~~ 515 (536)
|.++.|.+.++..... .|+ ...-..|-..+.+.|+.++|.+.+..|. ..+..|+..........+...|
T Consensus 463 ~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~g 540 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVG 540 (895)
T ss_pred hhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhh
Confidence 7777777777777664 333 2333445555667777777777776643 2234455555555555555666
Q ss_pred hhhhhhHHHH
Q 048749 516 ERGEQGKKVI 525 (536)
Q Consensus 516 ~~~~a~~~~~ 525 (536)
+.++-.....
T Consensus 541 k~E~fi~t~~ 550 (895)
T KOG2076|consen 541 KREEFINTAS 550 (895)
T ss_pred hHHHHHHHHH
Confidence 6554443333
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.6e-12 Score=128.42 Aligned_cols=274 Identities=15% Similarity=0.127 Sum_probs=203.7
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhc-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048749 209 GVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEK-NEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSK 287 (536)
Q Consensus 209 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 287 (536)
.++..+...|+.|+.+||..+|.-||..|+.+.|- +|..|+ +..+.+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 46677889999999999999999999999999998 888874 446778899999999999999988776
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH-HCCCCCCHHHHH
Q 048749 288 CEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMK-NRGCLPNVTTYN 366 (536)
Q Consensus 288 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~ 366 (536)
.|...||..|..+|...||+.. |+...+ -.-.++..+...|.-..-..++..+. ..+.-||...
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n-- 144 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN-- 144 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH--
Confidence 6788899999999999999876 322222 22334555666776666666665543 2233445433
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCC-ChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 048749 367 SLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKP-EEVPWVLERMERNGCKMSTDTYNVILKLYVNWD 445 (536)
Q Consensus 367 ~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 445 (536)
.+....-.|.++.+.+++..+..... ..|..+ +|.-+... ...+++........-.|+..+|..++..-.-.|
T Consensus 145 -~illlv~eglwaqllkll~~~Pvsa~-~~p~~v----fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag 218 (1088)
T KOG4318|consen 145 -AILLLVLEGLWAQLLKLLAKVPVSAW-NAPFQV----FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAG 218 (1088)
T ss_pred -HHHHHHHHHHHHHHHHHHhhCCcccc-cchHHH----HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcC
Confidence 34445556778888888877654432 122222 35555433 445555555444222689999999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhhhhh
Q 048749 446 CEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRTGILVNDMNIKLKER 517 (536)
Q Consensus 446 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~~ 517 (536)
+++.|..++.+|.+.|++.+...|..|+-+ .|+...+..+++-|.+.|+.|+..|+.-...-+.+.|..
T Consensus 219 ~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t 287 (1088)
T KOG4318|consen 219 DVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQT 287 (1088)
T ss_pred chhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhh
Confidence 999999999999999999998888888766 788888899999999999999999977777666665554
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.8e-10 Score=102.58 Aligned_cols=95 Identities=9% Similarity=0.143 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCc--HHH
Q 048749 430 STDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLK----GMVPE--PRT 503 (536)
Q Consensus 430 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~t 503 (536)
|...|.+|..+|.+.++.++|++.|......|- .+...+..|...|-+.++.++|..+|++.++. |..-+ ...
T Consensus 431 DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka 509 (559)
T KOG1155|consen 431 DSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKA 509 (559)
T ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHH
Confidence 566777777777777777777777776666542 24466666677777777777777666665542 22211 122
Q ss_pred HHHHHHHHHhhhhhhhhhHHHH
Q 048749 504 GILVNDMNIKLKERGEQGKKVI 525 (536)
Q Consensus 504 ~~~l~~~~~~~~~~~~a~~~~~ 525 (536)
..-|...+.+.+++++|.....
T Consensus 510 ~~fLA~~f~k~~~~~~As~Ya~ 531 (559)
T KOG1155|consen 510 RLFLAEYFKKMKDFDEASYYAT 531 (559)
T ss_pred HHHHHHHHHhhcchHHHHHHHH
Confidence 3345555566666665555443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-09 Score=99.41 Aligned_cols=288 Identities=11% Similarity=0.056 Sum_probs=158.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048749 202 HMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNE-FGYDIKTMNIILNGWCVLGNVYEAKRFW 280 (536)
Q Consensus 202 g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~ 280 (536)
|++.+|+++..+-.+.+ +.....|..-..+.-..|+.+.+-.++.+..+. -.++....-.........|+++.|..-+
T Consensus 98 G~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 98 GDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred CcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 44555555444444433 222223333344444445555555555443221 1233334444444444555555555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCH-------hhHHHHHHHHHhcCChHHHHHHHHHH
Q 048749 281 KDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDV-------VTCNCIIDALCFKKRIPEALEVLREM 353 (536)
Q Consensus 281 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m 353 (536)
+++.+.+ +.+.........+|.+.|++.....++..|.+.|.-.|. .+|..+++-....+..+.-..-++..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 5554444 233444455555555555555555555555555443332 24555555444444444434444443
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHH--CCCCCCH
Q 048749 354 KNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMER--NGCKMST 431 (536)
Q Consensus 354 ~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~--~~~~~~~ 431 (536)
... .+-++..-.+++.-+.++|+.++|.++..+..+++ ..|. ... +-.+-+.++.....+.+.+ ...+-++
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~--~D~~---L~~-~~~~l~~~d~~~l~k~~e~~l~~h~~~p 328 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQ--WDPR---LCR-LIPRLRPGDPEPLIKAAEKWLKQHPEDP 328 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhc--cChh---HHH-HHhhcCCCCchHHHHHHHHHHHhCCCCh
Confidence 221 12244455555666666666666666666666655 3333 111 1122223333322222222 1123345
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc
Q 048749 432 DTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPE 500 (536)
Q Consensus 432 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 500 (536)
..+.+|...|.+.+.+.+|.+.|+...+. .|+..+|+.+..++.+.|+.++|.++.++-...-..|+
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 78899999999999999999999977765 79999999999999999999999999998775444443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.5e-12 Score=119.86 Aligned_cols=273 Identities=13% Similarity=0.094 Sum_probs=157.5
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCC---CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048749 203 MVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNE---FGYDIKTMNIILNGWCVLGNVYEAKRF 279 (536)
Q Consensus 203 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~ 279 (536)
+..+|+..|.+..+ .+.....+...+..+|...+++++|+.+|+.++.. ...+...|.+.+--+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~-h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPS-HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 46677777877443 33444456666777888888888888888876432 123556666665433221 11111
Q ss_pred -HHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048749 280 -WKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKP-DVVTCNCIIDALCFKKRIPEALEVLREMKNRG 357 (536)
Q Consensus 280 -~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 357 (536)
-+++.+.. +-.+.+|.++.++|.-+++.+.|++.|++..+. .| ..++|+.+-.-+.....+|.|...|+.....
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~- 484 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV- 484 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC-
Confidence 12222222 345678888888888888888888888887774 34 5677777777777777888888888877653
Q ss_pred CCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHH----HHHHHHHhcCCCChHHHHHHHHHHCCCCCC
Q 048749 358 CLPNVTTYN---SLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEI----TFNYLLKSLKKPEEVPWVLERMERNGCKMS 430 (536)
Q Consensus 358 ~~p~~~~~~---~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~----~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~ 430 (536)
|...|| -|...|.+.++++.|.-.|+++.+.+ |... .+..+...+++.++|..++++......+ |
T Consensus 485 ---~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN----P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n 556 (638)
T KOG1126|consen 485 ---DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN----PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-N 556 (638)
T ss_pred ---CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC----ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-C
Confidence 444444 45567778888888888888887755 3211 1122223334444444444444433222 2
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048749 431 TDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPD-QRSYTVMIHGLYDKGRLEDALSYFHEMRL 494 (536)
Q Consensus 431 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 494 (536)
.-.--.-+..+...+++++|+..++++++. .|+ ...+..+...|.+.|+.+.|+.-|--|.+
T Consensus 557 ~l~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 557 PLCKYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred chhHHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 222222233344455556666666665554 333 23344444555555666655555555544
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.4e-10 Score=106.58 Aligned_cols=245 Identities=12% Similarity=0.119 Sum_probs=167.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH------------------------------------HHhcCCHh
Q 048749 266 GWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNA------------------------------------LTKKGKLG 309 (536)
Q Consensus 266 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~------------------------------------~~~~g~~~ 309 (536)
.|.+.|+++.|.++++-+.+..-+.-...-+.|... ...+|+++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~d 507 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLD 507 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHH
Confidence 466899999999999877654322111111111100 11246788
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048749 310 TALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEME 389 (536)
Q Consensus 310 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 389 (536)
+|.+.|++.....-.-....||.= -.+-..|++++|++.|-++... +.-++.+...+...|-...+...|++++.+..
T Consensus 508 ka~~~ykeal~ndasc~ealfnig-lt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 508 KAAEFYKEALNNDASCTEALFNIG-LTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHcCchHHHHHHHHhc-ccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 888888887775332222233322 2355778888888888776432 11266777777888888888888888887765
Q ss_pred hcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHH--CCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHH
Q 048749 390 QKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMER--NGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQR 467 (536)
Q Consensus 390 ~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 467 (536)
.. ++.|.....-+-..|-+.++-.+.|..--+ .-++-|..+...|..-|....-.++++..|++..- +.|+..
T Consensus 586 sl---ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~ 660 (840)
T KOG2003|consen 586 SL---IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQS 660 (840)
T ss_pred cc---CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHH
Confidence 53 334555566666666555544444443322 23466788888888888888889999999988765 489999
Q ss_pred HHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhhhhhh
Q 048749 468 SYTVMIHGLY-DKGRLEDALSYFHEMRLKGMVPEPRTGILVNDMNIKLKERG 518 (536)
Q Consensus 468 ~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~~~ 518 (536)
-|..||..|. +.|++++|+++++....+ +.-|......|.+++...|..+
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccchh
Confidence 9999997665 679999999999998765 6667777899999988887654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.4e-11 Score=117.17 Aligned_cols=283 Identities=12% Similarity=0.076 Sum_probs=190.3
Q ss_pred CHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048749 171 RFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFG--ELDDLSAFQNLLLWLCRYKHVEVAETFF 246 (536)
Q Consensus 171 ~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 246 (536)
+..+|...|++++ ..-+..+...+.++|...+++++|.++|+...+.. ..-+...|.+.+--+-+. .++..+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 4567777777755 33344556667777888888888888887776543 123456666665433221 122222
Q ss_pred HH-hcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC
Q 048749 247 ES-EKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKP 325 (536)
Q Consensus 247 ~~-~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 325 (536)
.+ +....+..+.+|-++..+|.-.++.+.|++.|+..+..+ +-...+|+.+..-+....++|.|...|+..+..
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~---- 484 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV---- 484 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC----
Confidence 22 222334567788888888888888888888888777654 235677777777777788888888888776553
Q ss_pred CHhhHH---HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHH
Q 048749 326 DVVTCN---CIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITF 402 (536)
Q Consensus 326 ~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~ 402 (536)
|+..|+ .+...|.|.++++.|+-.|+++.+-+.. +.+....+...+.+.|+.|+|+++++++...+++-....+--
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 444444 4455677888888888888877766543 556666667777778888888888888777653222223334
Q ss_pred HHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCC
Q 048749 403 NYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGP 464 (536)
Q Consensus 403 ~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 464 (536)
..++-...+.++|...++++++.- +-+...|..+...|-+.|+.+.|+.-|.-+.+.+.++
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 455666677778887777777742 4467788889999999999999999998888764433
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.2e-10 Score=100.05 Aligned_cols=219 Identities=16% Similarity=0.095 Sum_probs=145.3
Q ss_pred CCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHhcCCHHH
Q 048749 170 RRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDD------LSAFQNLLLWLCRYKHVEV 241 (536)
Q Consensus 170 g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~------~~~~~~ll~~~~~~~~~~~ 241 (536)
.+.++|.++|-+|. ++.+..+--+|.+.|-+.|..+.|+.+.+.+.+. || ..+.-.|..-|...|-+|.
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 45566666666665 3333344455666666666666666666666552 33 1233345555677777788
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHhHHHHHHHH
Q 048749 242 AETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDS----VTYATFVNALTKKGKLGTALRLFQA 317 (536)
Q Consensus 242 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~ 317 (536)
|+.+|..+...-.--......|+..|-...+|++|+++-+++.+.+-.+.. .-|.-+...+....+.+.|..++.+
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 888877765432334556677788888888888888888877776533332 2345555556667778888888888
Q ss_pred HHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048749 318 MWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 318 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 392 (536)
..+...+ .+..--.+.+.....|+++.|++.++...+.+..--..+...|..+|...|+.++....+..+.+..
T Consensus 206 Alqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 206 ALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 7775322 3333345566777888888888888888877544446677788888888888888888888887765
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.8e-09 Score=95.29 Aligned_cols=385 Identities=12% Similarity=0.055 Sum_probs=249.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 048749 133 RFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP-DLVN-EKTYGILLNRYAAAHMVEEAIGV 210 (536)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~li~~~~~~g~~~~A~~~ 210 (536)
.++...|..+|+.+..-. ..+...|-..+.+-.++.++..|..+|++.. ..|. ...|-.-+-.=-..|++..|.++
T Consensus 86 q~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 356777888888877654 3456677777777778888888888887766 2232 23455555555566777888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CC-
Q 048749 211 FDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKS-KC- 288 (536)
Q Consensus 211 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~- 288 (536)
|++-.+. .|+..+|.+.++.-.+.+..+.|..++++..- +.|++..|......-.++|++..|..+|+..++. |-
T Consensus 164 ferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~-~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d 240 (677)
T KOG1915|consen 164 FERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL-VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDD 240 (677)
T ss_pred HHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe-ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhH
Confidence 8776653 57777888877777777777888887777432 2477777777777667777777777777766542 10
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc------------------------C-------------------CCC
Q 048749 289 EPDSVTYATFVNALTKKGKLGTALRLFQAMWEK------------------------G-------------------RKP 325 (536)
Q Consensus 289 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------------------------g-------------------~~p 325 (536)
..+...+.+...-=.+...++.|.-+|+-.++. | -+-
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~ 320 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY 320 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC
Confidence 111222222222222333444444444433322 0 112
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHH-----HHH---HhcCCHHHHHHHHHHHHhcCCCC
Q 048749 326 DVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNV--TTYNSLI-----KHL---CKIKRMETVYEYLDEMEQKNGSC 395 (536)
Q Consensus 326 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li-----~~~---~~~~~~~~A~~~~~~m~~~~~~~ 395 (536)
|-.+|--.+..-...|+.+...++|+..... ++|-. ..|.--| -++ ....+.+.+.++|+...+. +
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l---I 396 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL---I 396 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh---c
Confidence 3334555555566678888888888887754 33321 1111111 111 2467788888888887773 4
Q ss_pred CCcHHHHHHHHHhc-------CCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHH
Q 048749 396 LPNEITFNYLLKSL-------KKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRS 468 (536)
Q Consensus 396 ~p~~~~~~~ll~~~-------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 468 (536)
+...+||.-+--.+ .+...|.+++... .|..|-..+|...|..-.+.+++|.+..++++..+.+ +-|..+
T Consensus 397 PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~A--IG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~ 473 (677)
T KOG1915|consen 397 PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNA--IGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYA 473 (677)
T ss_pred CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHH--hccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHH
Confidence 44556666543333 3344555555543 4668888999999999999999999999999999875 236678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCcHHHHHHHHHHHHhhhhhhhhhHHHHHhhh
Q 048749 469 YTVMIHGLYDKGRLEDALSYFHEMRLKGM-VPEPRTGILVNDMNIKLKERGEQGKKVIKLTS 529 (536)
Q Consensus 469 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~l~~~~~~~~~~~~a~~~~~~~~~ 529 (536)
|......--..|+.+.|..+|+-.+.+.. ......+...++.-...|+.+.+..++.+++.
T Consensus 474 W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 474 WSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH
Confidence 88877777788999999999999887643 22233467777777888899999888888754
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.4e-09 Score=106.60 Aligned_cols=380 Identities=11% Similarity=0.058 Sum_probs=256.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048749 135 DWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP-----DLVNEKTYGILLNRYAAAHMVEEAIG 209 (536)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~ 209 (536)
+++.|.+.|..+.++. ++|.-.+---..+....|++..|+.+|.... ..+|+ .-.+..++.+.|+.+.|+.
T Consensus 145 ~~~~A~a~F~~Vl~~s--p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~--rIgig~Cf~kl~~~~~a~~ 220 (1018)
T KOG2002|consen 145 SMDDADAQFHFVLKQS--PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADV--RIGIGHCFWKLGMSEKALL 220 (1018)
T ss_pred cHHHHHHHHHHHHhhC--CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCc--cchhhhHHHhccchhhHHH
Confidence 4689999999998875 4555444444444556889999999999855 22332 2223356678899999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048749 210 VFDRRKEFGELDDLSAFQNLLLWLCRY---KHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKS 286 (536)
Q Consensus 210 ~~~~m~~~g~~~~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 286 (536)
.|.+..+.. +.++.++..|...-... ..+..+...+...-..-+.++++.+.|...|.-.|+++.++.+...+...
T Consensus 221 a~~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~ 299 (1018)
T KOG2002|consen 221 AFERALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKN 299 (1018)
T ss_pred HHHHHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 999999865 23333443333222222 33556677776654444668889999999999999999999999988764
Q ss_pred CCC--CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCH--hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 048749 287 KCE--PDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDV--VTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNV 362 (536)
Q Consensus 287 g~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 362 (536)
... .-...|-.+.++|-..|++++|..+|.+..+. .+|. ..+-.+...|.+.|+++.+...|+...+... -+.
T Consensus 300 t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p-~~~ 376 (1018)
T KOG2002|consen 300 TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP-NNY 376 (1018)
T ss_pred hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCc-chH
Confidence 311 12345888999999999999999999887774 3443 3455678899999999999999999977632 256
Q ss_pred HHHHHHHHHHHhcC----CHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhc--CCCChHH----HHHHHHHHCCCCCCHH
Q 048749 363 TTYNSLIKHLCKIK----RMETVYEYLDEMEQKNGSCLPNEITFNYLLKSL--KKPEEVP----WVLERMERNGCKMSTD 432 (536)
Q Consensus 363 ~~~~~li~~~~~~~----~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~--~~~~~a~----~~~~~~~~~~~~~~~~ 432 (536)
.+...|...|...+ ..++|..++.+..+.. ..|...|-.+-..+ .+..... .+.+.+...+-.+...
T Consensus 377 etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~---~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E 453 (1018)
T KOG2002|consen 377 ETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT---PVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPE 453 (1018)
T ss_pred HHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc---cccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHH
Confidence 66666666676654 5677888887776653 34555665555554 2332333 3344555566667889
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHC---CCCCCHH-----HHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHH
Q 048749 433 TYNVILKLYVNWDCEDKVRHTWEEMEKK---GMGPDQR-----SYT-VMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRT 503 (536)
Q Consensus 433 ~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~-----~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 503 (536)
..|.+...+...|++.+|...|+..... ...+|.. |.. .+...+-..++++.|.+.|...++. .|.-++
T Consensus 454 ~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId 531 (1018)
T KOG2002|consen 454 VLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYID 531 (1018)
T ss_pred HHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHH
Confidence 9999999999999999999999987754 2233331 111 2333344456778888888887764 455555
Q ss_pred -HHHHHHHHHhhhhhhhhhHHHHHh
Q 048749 504 -GILVNDMNIKLKERGEQGKKVIKL 527 (536)
Q Consensus 504 -~~~l~~~~~~~~~~~~a~~~~~~~ 527 (536)
|..+..+....+...+|...+.+.
T Consensus 532 ~ylRl~~ma~~k~~~~ea~~~lk~~ 556 (1018)
T KOG2002|consen 532 AYLRLGCMARDKNNLYEASLLLKDA 556 (1018)
T ss_pred HHHHhhHHHHhccCcHHHHHHHHHH
Confidence 444444444445555666666653
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.8e-09 Score=99.66 Aligned_cols=102 Identities=14% Similarity=0.102 Sum_probs=81.5
Q ss_pred CCCHHH--HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHH
Q 048749 428 KMSTDT--YNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQR-SYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRTG 504 (536)
Q Consensus 428 ~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 504 (536)
+|.... +-.++..|-+.|+++.|...++..... .|+.+ .|-.=.+.+...|++++|..++++..+.. .||...-
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~IN 442 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAIN 442 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHH
Confidence 455444 445778889999999999999998876 56643 34444577888999999999999998763 4677776
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHhhhccC
Q 048749 505 ILVNDMNIKLKERGEQGKKVIKLTSLGL 532 (536)
Q Consensus 505 ~~l~~~~~~~~~~~~a~~~~~~~~~~g~ 532 (536)
.--.....+.++.++|.+.+.++++.|.
T Consensus 443 sKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 443 SKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 6788888999999999999999998875
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.4e-08 Score=93.99 Aligned_cols=381 Identities=12% Similarity=0.079 Sum_probs=208.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC-------CCCCHHHHHHHHHHHHhcCCHHHH
Q 048749 135 DWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP-------DLVNEKTYGILLNRYAAAHMVEEA 207 (536)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~A 207 (536)
.++.|..+++.+.+. ++.+...|-+-...--.+|+.+...+++++-. ...+...|-.=...|-..|.+-.+
T Consensus 421 tYenAkkvLNkaRe~--iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~Tc 498 (913)
T KOG0495|consen 421 TYENAKKVLNKAREI--IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITC 498 (913)
T ss_pred HHHHHHHHHHHHHhh--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhH
Confidence 556666666666554 45566666665555556666666655555432 223334444444444444444444
Q ss_pred HHHHHHHHHcCCC------------------------------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC
Q 048749 208 IGVFDRRKEFGEL------------------------------------DDLSAFQNLLLWLCRYKHVEVAETFFESEKN 251 (536)
Q Consensus 208 ~~~~~~m~~~g~~------------------------------------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 251 (536)
..+....+..|+. -+...|......--..|..+....+|++...
T Consensus 499 QAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~ 578 (913)
T KOG0495|consen 499 QAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVE 578 (913)
T ss_pred HHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 4444444444432 2333343443333444445555555555444
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHH
Q 048749 252 EFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCN 331 (536)
Q Consensus 252 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 331 (536)
.++.....|-....-+-..|++..|..++.+..+.. +-+...|-.-+.....+.+++.|..+|.+... ..|+..+|.
T Consensus 579 ~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~m 655 (913)
T KOG0495|consen 579 QCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWM 655 (913)
T ss_pred hCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhH
Confidence 444444455555555555555555555555555443 22444555555555555555555555555444 234444444
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhc-
Q 048749 332 CIIDALCFKKRIPEALEVLREMKNRGCLPN-VTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSL- 409 (536)
Q Consensus 332 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~- 409 (536)
--+..---.++.++|.+++++..+. -|+ ...|-.+.+.+-+.++.+.|.+.|..-.+. -|+..-.-.++.-+
T Consensus 656 Ks~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~----cP~~ipLWllLakle 729 (913)
T KOG0495|consen 656 KSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK----CPNSIPLWLLLAKLE 729 (913)
T ss_pred HHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc----CCCCchHHHHHHHHH
Confidence 4444444445555555555555443 233 233444444555555555555555544332 23333333333322
Q ss_pred ---CCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHC----C---------------------
Q 048749 410 ---KKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKK----G--------------------- 461 (536)
Q Consensus 410 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g--------------------- 461 (536)
+..-.|..+++.-.-.+ +-+...|...|++-.+.|+.+.|..+..+..+. |
T Consensus 730 Ek~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~D 808 (913)
T KOG0495|consen 730 EKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSID 808 (913)
T ss_pred HHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHH
Confidence 33445666676665544 457888999999999999999888877655432 1
Q ss_pred ----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc-HHHHHHHHHHHHhhhhhhhhhHHHHHhhh
Q 048749 462 ----MGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPE-PRTGILVNDMNIKLKERGEQGKKVIKLTS 529 (536)
Q Consensus 462 ----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l~~~~~~~~~~~~a~~~~~~~~~ 529 (536)
+.-|....-.+...+....++++|.+.|.+.++. .|| ..++..+......+|..++..+++.+..+
T Consensus 809 ALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~--d~d~GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 809 ALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK--DPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred HHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc--CCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 2234455555566666777888888888888764 344 44577788888888877777777766543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.3e-10 Score=116.78 Aligned_cols=265 Identities=9% Similarity=0.027 Sum_probs=144.8
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---------hcCCHHHHHHHHHHhc
Q 048749 185 LVNEKTYGILLNRYAA-----AHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLC---------RYKHVEVAETFFESEK 250 (536)
Q Consensus 185 ~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~ 250 (536)
..+...|...+++... .+..++|+++|++..+.. +.+...|..+..++. ..+++++|...+++..
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 3444555555554321 134677777777776643 223444544443332 1233667777777754
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC-Hhh
Q 048749 251 NEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPD-VVT 329 (536)
Q Consensus 251 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~ 329 (536)
..-+.+...+..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|...+++..+.. |+ ...
T Consensus 332 ~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~ 408 (553)
T PRK12370 332 ELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAA 408 (553)
T ss_pred hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhh
Confidence 4445566677777777777777777777777776664 3345566666777777777777777777776642 32 222
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHH-Hh
Q 048749 330 CNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLL-KS 408 (536)
Q Consensus 330 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll-~~ 408 (536)
+..++..+...|++++|...++++.+...+-+...+..+..++...|+.++|...+.++.... |+..+....+ ..
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~----~~~~~~~~~l~~~ 484 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE----ITGLIAVNLLYAE 484 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc----chhHHHHHHHHHH
Confidence 223333455567777777777776544222234445556666677777777777777665432 3433333322 22
Q ss_pred c-CCCChHHHHHHHHHH-CCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHC
Q 048749 409 L-KKPEEVPWVLERMER-NGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKK 460 (536)
Q Consensus 409 ~-~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 460 (536)
+ ...+.+...++.+.+ ....+....+ +-..|.-.|+-+.+... +++.+.
T Consensus 485 ~~~~g~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 485 YCQNSERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HhccHHHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 2 222344444444443 1112221222 23334445555555544 666654
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.4e-09 Score=96.90 Aligned_cols=353 Identities=13% Similarity=0.098 Sum_probs=228.5
Q ss_pred cCCHHHHHHHHHHHHhCC-CCCCC--HHHHHHHHHHHHccCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHH
Q 048749 133 RFDWEAAYTFFKWVSREG-DYSPG--SNVFNAILDVLGRARRFVELIQVFDEMP-DLVNEKTYGILLNRYAAAHMVEEAI 208 (536)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~-~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~ 208 (536)
.+++..|+++++.+..+- .+..+ ....+.+.-.+.+.|++++|+.-|+... ..|+-.+--.|+-++..-|+-++..
T Consensus 250 kr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmk 329 (840)
T KOG2003|consen 250 KREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMK 329 (840)
T ss_pred hhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHH
Confidence 367888888888777663 11111 2334444455667778888877777655 4455544333344444556777777
Q ss_pred HHHHHHHHcCC------------CCCHHHHHHHH----------------------------------------------
Q 048749 209 GVFDRRKEFGE------------LDDLSAFQNLL---------------------------------------------- 230 (536)
Q Consensus 209 ~~~~~m~~~g~------------~~~~~~~~~ll---------------------------------------------- 230 (536)
+.|.+|+..-. .|+....+..+
T Consensus 330 eaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~l 409 (840)
T KOG2003|consen 330 EAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESL 409 (840)
T ss_pred HHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHH
Confidence 77777653211 12222222111
Q ss_pred -----------------HHHHhcCCHHHHHHHHHHhcCCC-C------CCHHH-------------------------HH
Q 048749 231 -----------------LWLCRYKHVEVAETFFESEKNEF-G------YDIKT-------------------------MN 261 (536)
Q Consensus 231 -----------------~~~~~~~~~~~a~~~~~~~~~~~-~------~~~~~-------------------------~~ 261 (536)
.-+.+.|+++.|.+++.-..+.- + .+... ||
T Consensus 410 k~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn 489 (840)
T KOG2003|consen 410 KASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYN 489 (840)
T ss_pred HHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccC
Confidence 11368899999988877643210 1 01111 11
Q ss_pred HHH-----HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 048749 262 IIL-----NGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDA 336 (536)
Q Consensus 262 ~li-----~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 336 (536)
.-. ......|++++|.+.+++.....-.-....|+. .-.+-..|++++|++.|-.+..- +..+..+...+...
T Consensus 490 ~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~i-l~nn~evl~qiani 567 (840)
T KOG2003|consen 490 AAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANI 567 (840)
T ss_pred HHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHH
Confidence 100 011146889999999999886543222233332 33466789999999999877654 33477788888999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHH
Q 048749 337 LCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVP 416 (536)
Q Consensus 337 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~ 416 (536)
|-...+...|++++.+.... ++.|......|...|-+.|+-..|++.+-+--.- .+-+..|...+-.-|-...-.+
T Consensus 568 ye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry---fp~nie~iewl~ayyidtqf~e 643 (840)
T KOG2003|consen 568 YELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY---FPCNIETIEWLAAYYIDTQFSE 643 (840)
T ss_pred HHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc---cCcchHHHHHHHHHHHhhHHHH
Confidence 99999999999999877543 4457889999999999999999999987654443 3456666666665565544444
Q ss_pred HHHHHHHH-CCCCCCHHHHHHHHHHHH-ccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048749 417 WVLERMER-NGCKMSTDTYNVILKLYV-NWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMR 493 (536)
Q Consensus 417 ~~~~~~~~-~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 493 (536)
+....+.+ .-+.|+..-|..++..|. +.|++.+|.++++...+. ++-|......|++.+...|- .++.++-+++.
T Consensus 644 kai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl-~d~key~~kle 720 (840)
T KOG2003|consen 644 KAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL-KDAKEYADKLE 720 (840)
T ss_pred HHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc-hhHHHHHHHHH
Confidence 44444444 446899999998886665 689999999999999875 67788999999998888775 44555555443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.6e-08 Score=92.32 Aligned_cols=344 Identities=12% Similarity=0.019 Sum_probs=208.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048749 135 DWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFD 212 (536)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 212 (536)
+++.|+-++..+.+. ++.+...|. +|++..-++.|..++++.. .+.+...|.+-...--.+|+.+...++++
T Consensus 391 ~~~darilL~rAvec--cp~s~dLwl----AlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~ 464 (913)
T KOG0495|consen 391 EPEDARILLERAVEC--CPQSMDLWL----ALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIID 464 (913)
T ss_pred ChHHHHHHHHHHHHh--ccchHHHHH----HHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 667799999999886 355555554 5566778899999999988 67788899998888889999999999887
Q ss_pred H----HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh-cCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048749 213 R----RKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESE-KNEF--GYDIKTMNIILNGWCVLGNVYEAKRFWKDIIK 285 (536)
Q Consensus 213 ~----m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 285 (536)
+ +...|+..+...|..=...|-..|..-.+..+...+ .-++ ..-..+|+.-...|.+.+.++-|..+|....+
T Consensus 465 rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alq 544 (913)
T KOG0495|consen 465 RGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQ 544 (913)
T ss_pred HHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHh
Confidence 6 446688888877777777777777666666665552 2121 22345666666677777777777777766654
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 048749 286 SKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTY 365 (536)
Q Consensus 286 ~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 365 (536)
-- +-+...|......--..|..+....++++.... ++-....|.....-+-..|+...|..++....+.... +...|
T Consensus 545 vf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiw 621 (913)
T KOG0495|consen 545 VF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIW 621 (913)
T ss_pred hc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHH
Confidence 32 334455555555555566666666666666654 3333444544555555566666666666666555333 45566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHH---HHHHHhcCCCChHHHHHHHHHHC-----------------
Q 048749 366 NSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITF---NYLLKSLKKPEEVPWVLERMERN----------------- 425 (536)
Q Consensus 366 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~---~~ll~~~~~~~~a~~~~~~~~~~----------------- 425 (536)
-+-+..-....+++.|..+|.+....+ |+...| ..+...+...++|.+++++..+.
T Consensus 622 laavKle~en~e~eraR~llakar~~s----gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~ 697 (913)
T KOG0495|consen 622 LAAVKLEFENDELERARDLLAKARSIS----GTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQ 697 (913)
T ss_pred HHHHHHhhccccHHHHHHHHHHHhccC----CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHH
Confidence 666666666666666666666665544 233222 22233334444444444333321
Q ss_pred ----------------CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048749 426 ----------------GCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYF 489 (536)
Q Consensus 426 ----------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 489 (536)
.++-..-.|..|.+.--+.|.+-+|..+++...-.+ +-+...|-..|..-.+.|+.+.|..+.
T Consensus 698 ~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lm 776 (913)
T KOG0495|consen 698 MENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLM 776 (913)
T ss_pred HHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHH
Confidence 122233344444455555556666666666555443 224555666666666666666665554
Q ss_pred HHH
Q 048749 490 HEM 492 (536)
Q Consensus 490 ~~m 492 (536)
.+.
T Consensus 777 akA 779 (913)
T KOG0495|consen 777 AKA 779 (913)
T ss_pred HHH
Confidence 443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.6e-10 Score=100.31 Aligned_cols=198 Identities=14% Similarity=0.088 Sum_probs=105.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 048749 190 TYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCV 269 (536)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 269 (536)
.+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|+++.|.+.+++.....+.+...+..+...+..
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 111 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQ 111 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 44444455555555555555555544432 22344444455555555555555555555332223344455555555556
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHH
Q 048749 270 LGNVYEAKRFWKDIIKSKC-EPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALE 348 (536)
Q Consensus 270 ~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 348 (536)
.|++++|.+.+++..+... ......+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|..
T Consensus 112 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 190 (234)
T TIGR02521 112 QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARA 190 (234)
T ss_pred cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666665554321 1123344555556666666666666666665542 1234455556666666666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048749 349 VLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQ 390 (536)
Q Consensus 349 ~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 390 (536)
.+++..+. .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 191 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 191 YLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 66666554 223445555555666666666666666655543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=7e-09 Score=94.56 Aligned_cols=292 Identities=11% Similarity=0.017 Sum_probs=226.6
Q ss_pred hcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 048749 235 RYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRL 314 (536)
Q Consensus 235 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 314 (536)
-.|++..|++...+-.+.-+.....|..-.++.-+.|+.+.|-+++.+..+.--.++...+-+........|+++.|..-
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 36899999999988655445556667777788889999999999999998764466777788888889999999999999
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHH
Q 048749 315 FQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNV-------TTYNSLIKHLCKIKRMETVYEYLDE 387 (536)
Q Consensus 315 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~~~~~~A~~~~~~ 387 (536)
+.++.+.+-. ++........+|.+.|++.....++..+.+.|.--+. .+|+.+++-....+..+.-...++.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 9999887543 6678889999999999999999999999998876554 3577777777666667776677777
Q ss_pred HHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHH
Q 048749 388 MEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQR 467 (536)
Q Consensus 388 m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 467 (536)
...+-....+=..+|..-+--|+..++|.++.++..+.+..|+ -...-.+.+-++...-++..++-.+. .+-++.
T Consensus 255 ~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~ 329 (400)
T COG3071 255 QPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPL 329 (400)
T ss_pred ccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHh-CCCChh
Confidence 6554321122234555556677888999999998888776666 23334566778888777777766554 123457
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhhhhhhhhhHHHHHhhhccCCC
Q 048749 468 SYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRTGILVNDMNIKLKERGEQGKKVIKLTSLGLKG 534 (536)
Q Consensus 468 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p 534 (536)
.+.+|-..|.+++.|.+|.+.|+..++ ..|+..++..+...+.+.|+..+|.+...+-...-..|
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 788999999999999999999997766 68999999999999999999999998888754333333
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.7e-09 Score=97.81 Aligned_cols=284 Identities=13% Similarity=0.082 Sum_probs=137.2
Q ss_pred HHHHHHccCCHHHHHHHHHhCC--CCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhc
Q 048749 162 ILDVLGRARRFVELIQVFDEMP--DLVNEKTY-GILLNRYAAAHMVEEAIGVFDRRKEFGE--LDDLSAFQNLLLWLCRY 236 (536)
Q Consensus 162 li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~ll~~~~~~ 236 (536)
+..++....+.+++..=.+... .-++..-+ +....+.-...++++|+.+|+++.+... -.|..+|..++-.--.+
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 3344444445555555444443 11222222 2222333344566666666666665431 12445555554322221
Q ss_pred CCHH-HHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 048749 237 KHVE-VAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLF 315 (536)
Q Consensus 237 ~~~~-~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 315 (536)
..+. .|..+++ + . +--+.|+..+.+-|.-.++.++|...|+...+.+ +.....|+.|..-|....+...|.+-|
T Consensus 313 skLs~LA~~v~~-i-d--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 313 SKLSYLAQNVSN-I-D--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred HHHHHHHHHHHH-h-c--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHH
Confidence 1111 1111111 1 1 1223344555555556666666666666665554 334455666666666666666666666
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 048749 316 QAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSC 395 (536)
Q Consensus 316 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~ 395 (536)
+..++- .+.|-..|-.|..+|.-.+...-|+-+|++..+... -|...|.+|.++|.+.++.++|++.|+....-+.
T Consensus 388 RrAvdi-~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP-nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-- 463 (559)
T KOG1155|consen 388 RRAVDI-NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKP-NDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-- 463 (559)
T ss_pred HHHHhc-CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc--
Confidence 666554 233555566666666666666666666666555422 2556666666666666666666666666655541
Q ss_pred CCcHHHHHHHHHhc---CCCChHHHHHHHHH----HCCCCCC--HHHHHHHHHHHHccCChhHHHHHHH
Q 048749 396 LPNEITFNYLLKSL---KKPEEVPWVLERME----RNGCKMS--TDTYNVILKLYVNWDCEDKVRHTWE 455 (536)
Q Consensus 396 ~p~~~~~~~ll~~~---~~~~~a~~~~~~~~----~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~ 455 (536)
.+...+..+-..+ .+..+|...++... ..|...+ ...-.-|..-+.+.+++++|.....
T Consensus 464 -te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~ 531 (559)
T KOG1155|consen 464 -TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYAT 531 (559)
T ss_pred -cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 1333344443333 22333333333222 2232222 1222234556667777777665443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.6e-10 Score=100.74 Aligned_cols=198 Identities=11% Similarity=0.060 Sum_probs=157.8
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048749 155 GSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLW 232 (536)
Q Consensus 155 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 232 (536)
....+..+...+...|++++|.+.|++.. .+.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 45677888888888999999999888776 55567788888888889999999999998888765 4556677788888
Q ss_pred HHhcCCHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhH
Q 048749 233 LCRYKHVEVAETFFESEKNE--FGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGT 310 (536)
Q Consensus 233 ~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 310 (536)
+...|++++|...++..... .+.....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 88899999999998885332 23345567778888889999999999999888764 3356678888888999999999
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048749 311 ALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKN 355 (536)
Q Consensus 311 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 355 (536)
|...+++..+. .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999988876 344566677778888889999999988887754
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.9e-10 Score=114.40 Aligned_cols=248 Identities=12% Similarity=0.056 Sum_probs=128.6
Q ss_pred CHHHHHHHHHhCC--CCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 048749 171 RFVELIQVFDEMP--DLVNEKTYGILLNRYAA---------AHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHV 239 (536)
Q Consensus 171 ~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 239 (536)
.+++|..+|++.. ++.+...|..+..++.. .+++++|...+++..+.+ +.+..++..+...+...|++
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCH
Confidence 4566666666655 33444455444443331 233566666666666554 34555566666666666666
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 048749 240 EVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMW 319 (536)
Q Consensus 240 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 319 (536)
++|...|++.....+.+...+..+...+...|++++|...+++..+.... +...+..++..+...|++++|...+++..
T Consensus 355 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l 433 (553)
T PRK12370 355 IVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELR 433 (553)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 66666666644333445556666666666666666666666666655311 22222333334555666666666666665
Q ss_pred HcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCc
Q 048749 320 EKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPN-VTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPN 398 (536)
Q Consensus 320 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~ 398 (536)
+...+-+...+..+..++...|+.++|...+.++... .|+ ....+.+...|...| ++|...++.+.+... ..+.
T Consensus 434 ~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~-~~~~ 508 (553)
T PRK12370 434 SQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQ-RIDN 508 (553)
T ss_pred HhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhh-Hhhc
Confidence 5421213334555555666666777776666665443 122 333344444445444 355555555444322 2233
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHC
Q 048749 399 EITFNYLLKSLKKPEEVPWVLERMERN 425 (536)
Q Consensus 399 ~~~~~~ll~~~~~~~~a~~~~~~~~~~ 425 (536)
...+..++.++..-.+...+++.+.+.
T Consensus 509 ~~~~~~~~~~~~g~~~~~~~~~~~~~~ 535 (553)
T PRK12370 509 NPGLLPLVLVAHGEAIAEKMWNKFKNE 535 (553)
T ss_pred CchHHHHHHHHHhhhHHHHHHHHhhcc
Confidence 333344444443333333344555544
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.8e-08 Score=92.33 Aligned_cols=351 Identities=11% Similarity=0.086 Sum_probs=247.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048749 134 FDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP-DLVNEKTYGILLNRYAAAHMVEEAIGVFD 212 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 212 (536)
|+...|.++|+.=.. ..|+..+|++.|+.-.+-+.++.|..++++.. ..|++.+|-.-.+.=.++|+...|..+|.
T Consensus 155 gNi~gaRqiferW~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vye 231 (677)
T KOG1915|consen 155 GNIAGARQIFERWME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYE 231 (677)
T ss_pred cccHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 678888888876554 57888888888888888888888888888877 56888888888888888888888888888
Q ss_pred HHHHc-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCC--HHHHHHHHHHHHhcCCHHHHHHH--------H
Q 048749 213 RRKEF-GE-LDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYD--IKTMNIILNGWCVLGNVYEAKRF--------W 280 (536)
Q Consensus 213 ~m~~~-g~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~--------~ 280 (536)
...+. |- .-+...|++....-.++..++.|..+|.-....++.+ ...|......--+.|+....... +
T Consensus 232 rAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qY 311 (677)
T KOG1915|consen 232 RAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQY 311 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHH
Confidence 76653 21 1112233333333445667778888877755555544 45565555555556665544433 3
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCH-------hhHHHHHHHH---HhcCChHHHHHHH
Q 048749 281 KDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDV-------VTCNCIIDAL---CFKKRIPEALEVL 350 (536)
Q Consensus 281 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~~~~~li~~~---~~~g~~~~A~~~~ 350 (536)
+.+++.+ +-|-.+|--.++.-...|+.+...++|+..+.. ++|-. ++|.-+=.++ ....+.+.+.++|
T Consensus 312 E~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vy 389 (677)
T KOG1915|consen 312 EKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVY 389 (677)
T ss_pred HHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4444444 567778888888888889999999999999886 55521 1222222222 2568899999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHh---cCCCChHHHHHHHHH
Q 048749 351 REMKNRGCLPNVTTYNSLIKHL----CKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKS---LKKPEEVPWVLERME 423 (536)
Q Consensus 351 ~~m~~~g~~p~~~~~~~li~~~----~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~---~~~~~~a~~~~~~~~ 423 (536)
+...+. ++-...||..+=-.| .++.++..|.+++....-.- |-..+|...|.. +...+...++++...
T Consensus 390 q~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~c----PK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 390 QACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKC----PKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccC----CchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 988873 333455555544334 46788999999998887543 666666655543 466677888999988
Q ss_pred HCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048749 424 RNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKG-MGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLK 495 (536)
Q Consensus 424 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 495 (536)
+.+ +-|..+|.-....-...|+.|.|..+|+...... +......|.+.|+--...|.+++|..+++++++.
T Consensus 465 e~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 465 EFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred hcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 876 4577888888888888999999999999888752 2223456777777778899999999999999875
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.2e-09 Score=103.40 Aligned_cols=294 Identities=12% Similarity=0.115 Sum_probs=196.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHhCC-CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHH
Q 048749 158 VFNAILDVLGRARRFVELIQVFDEMP-DLVNE-KTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAF-QNLLLWLC 234 (536)
Q Consensus 158 ~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-~~ll~~~~ 234 (536)
..-....++...|++++|++.++.-. ..+|. .........+.+.|+.++|..+|..+++.+ |+...| ..+..+..
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHh
Confidence 34445567788999999999998866 44554 456777888999999999999999999876 555544 44444442
Q ss_pred hc-----CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048749 235 RY-----KHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNV-YEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKL 308 (536)
Q Consensus 235 ~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 308 (536)
-. ...+....+++.+....+- ......+.-.+..-..+ ..+..++..+...|+++ +|+.|-..|....+.
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~yp~-s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~ 159 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKYPR-SDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKA 159 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhCcc-ccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHH
Confidence 22 2467778888887655432 22222222222222223 24556667777788654 566666666666666
Q ss_pred hHHHHHHHHHHHc----C----------CCCCH--hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 048749 309 GTALRLFQAMWEK----G----------RKPDV--VTCNCIIDALCFKKRIPEALEVLREMKNRGCLPN-VTTYNSLIKH 371 (536)
Q Consensus 309 ~~a~~~~~~m~~~----g----------~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~ 371 (536)
+-..+++...... + -.|.. .++.-+...|...|++++|++++++.++. .|+ +..|..-...
T Consensus 160 ~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~Kari 237 (517)
T PF12569_consen 160 AIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARI 237 (517)
T ss_pred HHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence 6666666665443 1 12333 24455677788899999999999988886 455 6677777888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHH
Q 048749 372 LCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVR 451 (536)
Q Consensus 372 ~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 451 (536)
+-+.|++++|.+.++.....+ .-|...-+-.+..+.++|++++|.
T Consensus 238 lKh~G~~~~Aa~~~~~Ar~LD-----------------------------------~~DRyiNsK~aKy~LRa~~~e~A~ 282 (517)
T PF12569_consen 238 LKHAGDLKEAAEAMDEARELD-----------------------------------LADRYINSKCAKYLLRAGRIEEAE 282 (517)
T ss_pred HHHCCCHHHHHHHHHHHHhCC-----------------------------------hhhHHHHHHHHHHHHHCCCHHHHH
Confidence 889999999999999888765 225556666677778888888888
Q ss_pred HHHHHHHHCCCCCCHH------HH--HHHHHHHHhcCCHHHHHHHHHHHHH
Q 048749 452 HTWEEMEKKGMGPDQR------SY--TVMIHGLYDKGRLEDALSYFHEMRL 494 (536)
Q Consensus 452 ~~~~~m~~~g~~p~~~------~~--~~li~~~~~~g~~~~A~~~~~~m~~ 494 (536)
+++....+.+..|-.. .| .....+|.+.|++..|++.|....+
T Consensus 283 ~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 283 KTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 8888887765433221 22 3345678888888888877666554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.6e-10 Score=112.09 Aligned_cols=244 Identities=15% Similarity=0.085 Sum_probs=153.2
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048749 143 FKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP---DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGE 219 (536)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 219 (536)
+..+...+ ..|+..+|.++|.-|+..|+++.|- +|.-|. .+.+...++.++.+..+.++.+.+.
T Consensus 13 la~~e~~g-i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 13 LALHEISG-ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHhc-CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 33444444 8889999999999999999998888 888777 5677788899999888888877765
Q ss_pred CCCHHHHHHHHHHHHhcCCHHH---HHHHHHHhc-----CCCCCCHHHHH---------------HHHHHHHhcCCHHHH
Q 048749 220 LDDLSAFQNLLLWLCRYKHVEV---AETFFESEK-----NEFGYDIKTMN---------------IILNGWCVLGNVYEA 276 (536)
Q Consensus 220 ~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~-----~~~~~~~~~~~---------------~li~~~~~~g~~~~A 276 (536)
.|...||..|+.+|...|++.. +++.++.+. .|+. ....|. ..+.-..-.|-++.+
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvg-s~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVG-SPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccC-cHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 6888899999999999988654 333222221 1111 111111 111122223333444
Q ss_pred HHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048749 277 KRFWKDIIKSK-CEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKN 355 (536)
Q Consensus 277 ~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 355 (536)
++++..+.... ..|-. .+++-+... ..-..++........-.|++.+|.+++.+-...|+.+.|..++.+|.+
T Consensus 159 lkll~~~Pvsa~~~p~~----vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke 232 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWNAPFQ----VFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKE 232 (1088)
T ss_pred HHHHhhCCcccccchHH----HHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 44333332111 01111 113322222 222333333333321157888888888888888888888888888888
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCC
Q 048749 356 RGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKK 411 (536)
Q Consensus 356 ~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~ 411 (536)
.|.+.+.+-|..|+-+ .++...+..+++-|.+.| +.|+..|+..-+..+-+
T Consensus 233 ~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~g--v~p~seT~adyvip~l~ 283 (1088)
T KOG4318|consen 233 KGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKG--VQPGSETQADYVIPQLS 283 (1088)
T ss_pred cCCCcccccchhhhhc---CccchHHHHHHHHHHHhc--CCCCcchhHHHHHhhhc
Confidence 8888777777777765 677777888888888888 88888887766655544
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.3e-12 Score=83.19 Aligned_cols=49 Identities=29% Similarity=0.542 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048749 429 MSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLY 477 (536)
Q Consensus 429 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 477 (536)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.||++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4556666666666666666666666666666666666666666666654
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.3e-12 Score=82.76 Aligned_cols=49 Identities=35% Similarity=0.649 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048749 255 YDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALT 303 (536)
Q Consensus 255 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 303 (536)
||..+||++|.+|++.|++++|.++|++|.+.|++||..||+.||++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.4e-10 Score=97.80 Aligned_cols=230 Identities=12% Similarity=0.036 Sum_probs=174.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 048749 192 GILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLG 271 (536)
Q Consensus 192 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g 271 (536)
+.+.++|.+.|.+.+|.+.|+.-.+. .|-+.||..|-..|.+..+++.|+.++.+-...++.|+....-+.+.+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 66788888999999999888877764 5777788888888888888888888888876667777777777778888888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHH
Q 048749 272 NVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLR 351 (536)
Q Consensus 272 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 351 (536)
+.++|.++++...+.. +.++.....+...|.-.++++-|+.+|+++.+.|+. ++..|+.+.-+|.-.+++|-++.-|.
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 8888888888887664 445666666677777788888888888888888876 66777777777778888888888888
Q ss_pred HHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCC
Q 048749 352 EMKNRGCLPN--VTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKM 429 (536)
Q Consensus 352 ~m~~~g~~p~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~ 429 (536)
+....--.|+ ..+|..+-......|++..|.+.|+-....+ .-
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-----------------------------------~~ 427 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-----------------------------------AQ 427 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-----------------------------------cc
Confidence 7765433333 3456666666777788888888877776554 22
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHHC
Q 048749 430 STDTYNVILKLYVNWDCEDKVRHTWEEMEKK 460 (536)
Q Consensus 430 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 460 (536)
+...+|.|.-.-.+.|+++.|..+++.....
T Consensus 428 h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 428 HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 4567777777777888888888888776654
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.3e-08 Score=92.32 Aligned_cols=350 Identities=11% Similarity=0.048 Sum_probs=210.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHH-
Q 048749 134 FDWEAAYTFFKWVSREGDYSPG-SNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIG- 209 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~- 209 (536)
+.++.|++++.|++.. .|| +.-|......|...|+|++..+--.+.. .+.-+..+.--.+++-..|++++|+.
T Consensus 129 kkY~eAIkyY~~AI~l---~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D 205 (606)
T KOG0547|consen 129 KKYDEAIKYYTQAIEL---CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFD 205 (606)
T ss_pred ccHHHHHHHHHHHHhc---CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHh
Confidence 6899999999999985 567 7888899999999999999887666655 32223344444555666666666542
Q ss_pred ---------------------HHHH---------HHHcC--CCCCHHHHHHHHHHHHhc---------------------
Q 048749 210 ---------------------VFDR---------RKEFG--ELDDLSAFQNLLLWLCRY--------------------- 236 (536)
Q Consensus 210 ---------------------~~~~---------m~~~g--~~~~~~~~~~ll~~~~~~--------------------- 236 (536)
++.+ |.+.+ +.|+.....+....+...
T Consensus 206 ~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~ 285 (606)
T KOG0547|consen 206 VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALE 285 (606)
T ss_pred hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHH
Confidence 1111 11111 335555444444433110
Q ss_pred ----C---CHHHHHHHHHHhc--CCCCC-----CH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 048749 237 ----K---HVEVAETFFESEK--NEFGY-----DI------KTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYA 296 (536)
Q Consensus 237 ----~---~~~~a~~~~~~~~--~~~~~-----~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 296 (536)
+ .+..|...+.+-. ....+ |. .+...-...+.-.|+.-.|..-|+..+.....++ ..|-
T Consensus 286 ~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI 364 (606)
T KOG0547|consen 286 ALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN-SLYI 364 (606)
T ss_pred HHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc-hHHH
Confidence 0 1122222222200 00011 11 1111111223346778888888888887653322 2366
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048749 297 TFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIK 376 (536)
Q Consensus 297 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 376 (536)
-+..+|....+.++.++.|++..+.+-. ++.+|..-...+.-.+++++|..=|++.+..... ++..|-.+--+..+.+
T Consensus 365 ~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~ 442 (606)
T KOG0547|consen 365 KRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQH 442 (606)
T ss_pred HHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHH
Confidence 6777788888888888888888775332 5556666667777778888888888888765322 4555666666666778
Q ss_pred CHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhc---CCCChHHHHHHHHHHCC-----CCCCH--HHHHHHHHHHHccCC
Q 048749 377 RMETVYEYLDEMEQKNGSCLPNEITFNYLLKSL---KKPEEVPWVLERMERNG-----CKMST--DTYNVILKLYVNWDC 446 (536)
Q Consensus 377 ~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~---~~~~~a~~~~~~~~~~~-----~~~~~--~~~~~li~~~~~~g~ 446 (536)
++++++..|++.+++-+. -...|+..-..+ .+.+.|.+.++...+.. +-.+. .+.-.++..- -.++
T Consensus 443 k~~~~m~~Fee~kkkFP~---~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d 518 (606)
T KOG0547|consen 443 KIAESMKTFEEAKKKFPN---CPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKED 518 (606)
T ss_pred HHHHHHHHHHHHHHhCCC---CchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhh
Confidence 888888888888887532 223344333333 55667777777665532 11121 2222222222 2378
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048749 447 EDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRL 494 (536)
Q Consensus 447 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 494 (536)
++.|..++++..+.+. -....|..|...-.+.|+.++|+++|++-..
T Consensus 519 ~~~a~~Ll~KA~e~Dp-kce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 519 INQAENLLRKAIELDP-KCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHHHHHHHHHccCc-hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 8888888888877632 1345677888888888888888888887653
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.4e-08 Score=93.88 Aligned_cols=287 Identities=9% Similarity=0.028 Sum_probs=183.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 048749 191 YGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVL 270 (536)
Q Consensus 191 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 270 (536)
......-+-..+++.+..++++...+.. +++...+..-|.++...|+..+-..+=.++.+..|....+|-++.--|...
T Consensus 247 l~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i 325 (611)
T KOG1173|consen 247 LAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMI 325 (611)
T ss_pred HHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHh
Confidence 3334444556667777777777766654 455555555555666666655555554555555566667777777777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc--CCCCCHhhHHHHHHHHHhcCChHHHHH
Q 048749 271 GNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEK--GRKPDVVTCNCIIDALCFKKRIPEALE 348 (536)
Q Consensus 271 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~ 348 (536)
|+..+|.+.|.+....+ +.=...|-.....|+-.|..|+|+..|...-+. |.. -+..| +.--|.+.++.+.|.+
T Consensus 326 ~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LY--lgmey~~t~n~kLAe~ 401 (611)
T KOG1173|consen 326 GKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLY--LGMEYMRTNNLKLAEK 401 (611)
T ss_pred cCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHH--HHHHHHHhccHHHHHH
Confidence 77777777776654332 111345666667777777777777766665553 221 11222 2233666677777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCC
Q 048749 349 VLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCK 428 (536)
Q Consensus 349 ~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~ 428 (536)
.|.+..... +-|+...+-+.-.....+.+.+|..+|......- +...... .
T Consensus 402 Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~i---------------------------k~~~~e~-~ 452 (611)
T KOG1173|consen 402 FFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVI---------------------------KSVLNEK-I 452 (611)
T ss_pred HHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHh---------------------------hhccccc-c
Confidence 777665542 2255666666655666677777777776654211 0000111 1
Q ss_pred CCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHH
Q 048749 429 MSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRTGILVN 508 (536)
Q Consensus 429 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~ 508 (536)
....+++.|..+|.+.+.+++|+..+++..... +.|..++.++.-.|...|+++.|.+.|++.+. +.||..+...++
T Consensus 453 ~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL 529 (611)
T KOG1173|consen 453 FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELL 529 (611)
T ss_pred chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHH
Confidence 245578889999999999999999999988763 45888899998889999999999999998875 688887765555
Q ss_pred HHHHhh
Q 048749 509 DMNIKL 514 (536)
Q Consensus 509 ~~~~~~ 514 (536)
..++..
T Consensus 530 ~~aie~ 535 (611)
T KOG1173|consen 530 KLAIED 535 (611)
T ss_pred HHHHHh
Confidence 554443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.1e-08 Score=93.39 Aligned_cols=285 Identities=12% Similarity=0.038 Sum_probs=226.2
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 048749 152 YSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNL 229 (536)
Q Consensus 152 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 229 (536)
...++.....-.+-+...+++.+..++++... +++....+..-|..+...|+..+-..+=.+|.+.- +-.+.+|-++
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aV 318 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAV 318 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhH
Confidence 34567777888888889999999999999987 77888888888999999999888888888888754 6667899999
Q ss_pred HHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCC
Q 048749 230 LLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKS--KCEPDSVTYATFVNALTKKGK 307 (536)
Q Consensus 230 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~ 307 (536)
..-|.-.|..++|.+.|.+...--+.=...|-.....|+-.|..|+|+..+....+. |... -+--+.--|.+.+.
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hl---P~LYlgmey~~t~n 395 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHL---PSLYLGMEYMRTNN 395 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcc---hHHHHHHHHHHhcc
Confidence 988888899999999999843222334457888899999999999999998877653 3221 12223445788999
Q ss_pred HhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC----CCC--CCHHHHHHHHHHHHhcCCHHHH
Q 048749 308 LGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNR----GCL--PNVTTYNSLIKHLCKIKRMETV 381 (536)
Q Consensus 308 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~--p~~~~~~~li~~~~~~~~~~~A 381 (536)
++.|.++|.+.... .+.|+.+.+-+.-...+.+.+.+|..+|+..... +.. .-..+++.|..+|.+.+.+++|
T Consensus 396 ~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 396 LKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 99999999998876 4557888888877788889999999999987621 111 1345688889999999999999
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCC
Q 048749 382 YEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKG 461 (536)
Q Consensus 382 ~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 461 (536)
+..+++..... +-+..++.++.-.|...|+++.|.+.|.+....
T Consensus 475 I~~~q~aL~l~-----------------------------------~k~~~~~asig~iy~llgnld~Aid~fhKaL~l- 518 (611)
T KOG1173|consen 475 IDYYQKALLLS-----------------------------------PKDASTHASIGYIYHLLGNLDKAIDHFHKALAL- 518 (611)
T ss_pred HHHHHHHHHcC-----------------------------------CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc-
Confidence 99999988765 347888999999999999999999999987764
Q ss_pred CCCCHHHHHHHHHHHHh
Q 048749 462 MGPDQRSYTVMIHGLYD 478 (536)
Q Consensus 462 ~~p~~~~~~~li~~~~~ 478 (536)
.||..+-..++..+..
T Consensus 519 -~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 519 -KPDNIFISELLKLAIE 534 (611)
T ss_pred -CCccHHHHHHHHHHHH
Confidence 7888777777765443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.4e-09 Score=93.70 Aligned_cols=230 Identities=11% Similarity=0.025 Sum_probs=194.4
Q ss_pred HHHHHHHHccCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 048749 160 NAILDVLGRARRFVELIQVFDEMP-DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKH 238 (536)
Q Consensus 160 ~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 238 (536)
+.+.+.|.+.|.+.+|.+.|+... ..+-+.||-.|-++|.+..+++.|+.+|.+-.+. ++-|+.........+-..++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHHh
Confidence 678899999999999999999877 6677889999999999999999999999987764 24444444556677888999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 048749 239 VEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAM 318 (536)
Q Consensus 239 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 318 (536)
.++|.++++...+..+.++.....+..+|.-.++.+.|+++++.+...|+ -+...|+.+.-+|.-.+++|-++.-|++.
T Consensus 306 ~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~RA 384 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRA 384 (478)
T ss_pred HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHHHH
Confidence 99999999997666677888888888889999999999999999999995 47788999999999999999999999998
Q ss_pred HHcCCCCC--HhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048749 319 WEKGRKPD--VVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 319 ~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 392 (536)
...-..|+ ..+|-.+-......|++..|.+.|+-....+.. +...+|.|.-.-.+.|+.++|..++.......
T Consensus 385 lstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 385 LSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 87655454 345667777778899999999999988766433 67889988888889999999999999887744
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.8e-06 Score=81.45 Aligned_cols=389 Identities=10% Similarity=0.071 Sum_probs=219.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC---------CCCCHHHHHH
Q 048749 123 DLIVNVINRYRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP---------DLVNEKTYGI 193 (536)
Q Consensus 123 ~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~~ 193 (536)
..++..+... +-++-++++++.-.+ .++..-+-.|..+++.+++++|.+.+..+. .+.+...|..
T Consensus 142 ~lyl~Fv~~~-~lPets~rvyrRYLk-----~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~e 215 (835)
T KOG2047|consen 142 DLYLKFVESH-GLPETSIRVYRRYLK-----VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLE 215 (835)
T ss_pred HHHHHHHHhC-CChHHHHHHHHHHHh-----cCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHH
Confidence 3445555444 356677777777654 245557777788888888888888887776 2345566777
Q ss_pred HHHHHHhcCCHHHHH---HHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHH-hcCCCCCCHHHHHHHHHHH
Q 048749 194 LLNRYAAAHMVEEAI---GVFDRRKEFGELDDL--SAFQNLLLWLCRYKHVEVAETFFES-EKNEFGYDIKTMNIILNGW 267 (536)
Q Consensus 194 li~~~~~~g~~~~A~---~~~~~m~~~g~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~li~~~ 267 (536)
+-...+++.+.-..+ ++++.+... -+|. ..|.+|.+.|.+.|+++.|..+|++ +..- ..+.-|+.+-+.|
T Consensus 216 lcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Y 291 (835)
T KOG2047|consen 216 LCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAY 291 (835)
T ss_pred HHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHH
Confidence 777766665544333 333333321 2343 3677888888888888888888887 3322 2444455555555
Q ss_pred HhcCC----------------------HHHHHHHHHHHHHCC-----------CCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 048749 268 CVLGN----------------------VYEAKRFWKDIIKSK-----------CEPDSVTYATFVNALTKKGKLGTALRL 314 (536)
Q Consensus 268 ~~~g~----------------------~~~A~~~~~~m~~~g-----------~~~~~~~~~~li~~~~~~g~~~~a~~~ 314 (536)
+.... ++-.+.-|+.+...+ -+-++..|..-+. ...|+..+-...
T Consensus 292 a~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~t 369 (835)
T KOG2047|consen 292 AQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINT 369 (835)
T ss_pred HHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHH
Confidence 53211 111222233222211 0122333333222 234566677777
Q ss_pred HHHHHHcCCCCC------HhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHH
Q 048749 315 FQAMWEKGRKPD------VVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPN---VTTYNSLIKHLCKIKRMETVYEYL 385 (536)
Q Consensus 315 ~~~m~~~g~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~~~~~~A~~~~ 385 (536)
|.+..+. +.|- ...|..+...|-..|+++.|..+|++..+...+-- ..+|..-...=.+..+++.|+++.
T Consensus 370 yteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm 448 (835)
T KOG2047|consen 370 YTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLM 448 (835)
T ss_pred HHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 7777765 3332 23577888889999999999999999877543311 344555555556778899999988
Q ss_pred HHHHhcCC---------CCCCcHHHHH---------HHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 048749 386 DEMEQKNG---------SCLPNEITFN---------YLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCE 447 (536)
Q Consensus 386 ~~m~~~~~---------~~~p~~~~~~---------~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 447 (536)
+....... ...+....++ -+..+||-.+....+++.+.+..+.......|- ...+-...-+
T Consensus 449 ~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~Ny-AmfLEeh~yf 527 (835)
T KOG2047|consen 449 RRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINY-AMFLEEHKYF 527 (835)
T ss_pred HhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhhHHH
Confidence 87654320 0111112222 223345555666677777777654432222221 1122234446
Q ss_pred hHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCcHH-H-HHHHHHHHHhhhhhhhhh
Q 048749 448 DKVRHTWEEMEKKGMGPDQ-RSYTVMIHGLYDK---GRLEDALSYFHEMRLKGMVPEPR-T-GILVNDMNIKLKERGEQG 521 (536)
Q Consensus 448 ~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~-t-~~~l~~~~~~~~~~~~a~ 521 (536)
+++.+++++-...--.|+. ..|+..+.-+.+. -+.+.|..+|++.++ |..|... | |.+....=-+.|....+.
T Consensus 528 eesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~am 606 (835)
T KOG2047|consen 528 EESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAM 606 (835)
T ss_pred HHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 6777776654443223443 5677777666542 457889999999888 6666533 3 333333333344444555
Q ss_pred HHHHH
Q 048749 522 KKVIK 526 (536)
Q Consensus 522 ~~~~~ 526 (536)
+.+.+
T Consensus 607 siyer 611 (835)
T KOG2047|consen 607 SIYER 611 (835)
T ss_pred HHHHH
Confidence 55554
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.5e-07 Score=90.61 Aligned_cols=293 Identities=13% Similarity=0.121 Sum_probs=191.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc----
Q 048749 195 LNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVL---- 270 (536)
Q Consensus 195 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~---- 270 (536)
...+...|++++|++.+..-.. -+.............+.+.|+.++|..++..+....+.+..-|..+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~-~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEK-QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhh-hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccc
Confidence 3456777888888888866443 23334445566677788888888888888886555455555555555555222
Q ss_pred -CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-hHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHH
Q 048749 271 -GNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKL-GTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALE 348 (536)
Q Consensus 271 -g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 348 (536)
.+.+....+++++...- |...+...+.-.+.....+ ..+..++..+...|++ .+|+.|-..|....+.+-..+
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHH
Confidence 24666777777776542 3322222222112221122 3445556666667765 356666666665555555555
Q ss_pred HHHHHHHC----C----------CCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCC
Q 048749 349 VLREMKNR----G----------CLPNVT--TYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKP 412 (536)
Q Consensus 349 ~~~~m~~~----g----------~~p~~~--~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~ 412 (536)
++...... + -.|+.. ++..+.+.|-..|++++|++++++.++.. |
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht----P--------------- 225 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT----P--------------- 225 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC----C---------------
Confidence 55554322 1 123332 34555677778888888888888877754 2
Q ss_pred ChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048749 413 EEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEM 492 (536)
Q Consensus 413 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 492 (536)
..+..|..-.+.+-+.|++++|.+.++.....+.. |...-+..+..+.+.|++++|.+++..+
T Consensus 226 ----------------t~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~F 288 (517)
T PF12569_consen 226 ----------------TLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLF 288 (517)
T ss_pred ----------------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhh
Confidence 24678888899999999999999999999987543 7777777888899999999999999999
Q ss_pred HHCCCCCcHHH--------HHHHHHHHHhhhhhhhhhHHHHHhhh
Q 048749 493 RLKGMVPEPRT--------GILVNDMNIKLKERGEQGKKVIKLTS 529 (536)
Q Consensus 493 ~~~g~~p~~~t--------~~~l~~~~~~~~~~~~a~~~~~~~~~ 529 (536)
...+..|-... ..-...++.+.|+.+.|.+.+..+.+
T Consensus 289 tr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 289 TREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred cCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 88876443322 24556778888888888888776543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.5e-07 Score=83.09 Aligned_cols=266 Identities=12% Similarity=0.012 Sum_probs=149.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048749 219 ELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATF 298 (536)
Q Consensus 219 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 298 (536)
++.|......+...+...|+.+.|...|++...--+.+........-.+.+.|+.+....+...+.... .-+...|..-
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 345555666666666666666666666666433222222222222223345666666655555554321 1222333333
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048749 299 VNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRM 378 (536)
Q Consensus 299 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 378 (536)
...+....++..|+.+-++.++..- -+...|-.-...+...|+.++|.--|+...... +-+...|.-|+..|...|..
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchH
Confidence 3444556666777766666655421 122333333345566677777777776665432 12566777777777777777
Q ss_pred HHHHHHHHHHHhcCCCCCCcHHHHHHH-HHhcC----CCChHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChhHHHH
Q 048749 379 ETVYEYLDEMEQKNGSCLPNEITFNYL-LKSLK----KPEEVPWVLERMERNGCKMS-TDTYNVILKLYVNWDCEDKVRH 452 (536)
Q Consensus 379 ~~A~~~~~~m~~~~~~~~p~~~~~~~l-l~~~~----~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~ 452 (536)
.+|..+-+...+.- ..+..+...+ -..|. ..+.|.++++.-.+. .|+ ....+.+...|...|..+.++.
T Consensus 385 kEA~~~An~~~~~~---~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~ 459 (564)
T KOG1174|consen 385 KEANALANWTIRLF---QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIK 459 (564)
T ss_pred HHHHHHHHHHHHHh---hcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHH
Confidence 77766655554431 2233333322 11121 123444444443332 333 4556677777888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048749 453 TWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRL 494 (536)
Q Consensus 453 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 494 (536)
+++..... .||....+.|.+.+...+.+++|.+.|...+.
T Consensus 460 LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 460 LLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 88877764 67888888888888888888888888887765
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.3e-07 Score=92.41 Aligned_cols=244 Identities=18% Similarity=0.173 Sum_probs=169.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhc----C--C-CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-C
Q 048749 223 LSAFQNLLLWLCRYKHVEVAETFFESEK----N--E-FGYDIKT-MNIILNGWCVLGNVYEAKRFWKDIIKS-----K-C 288 (536)
Q Consensus 223 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~--~-~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~ 288 (536)
..++..+...|...|+++.|+.+++... + + ..|.+.+ .+.+...|...+++++|..+|+++... | .
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 4466668888888899998888887731 1 1 1233333 344667788899999999999888642 2 1
Q ss_pred CCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHc-----CCC-CCH-hhHHHHHHHHHhcCChHHHHHHHHHHHHC----
Q 048749 289 EPD-SVTYATFVNALTKKGKLGTALRLFQAMWEK-----GRK-PDV-VTCNCIIDALCFKKRIPEALEVLREMKNR---- 356 (536)
Q Consensus 289 ~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~-p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 356 (536)
.|. ..+++.|..+|.+.|++++|...++...+- |.. |.+ ..++.+...|+..+++++|..++....+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 222 356777778899999998888877766542 221 222 23566777788889999998888866431
Q ss_pred -CCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHH
Q 048749 357 -GCL--PNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDT 433 (536)
Q Consensus 357 -g~~--p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~ 433 (536)
|.. --..+++.|-..|.+.|++++|.++++++.... +........-....
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~---------------------------~~~~~~~~~~~~~~ 411 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL---------------------------RELLGKKDYGVGKP 411 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH---------------------------HhcccCcChhhhHH
Confidence 211 124578888999999999999999999876542 00001111123467
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHH----HCCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048749 434 YNVILKLYVNWDCEDKVRHTWEEME----KKGM-GPD-QRSYTVMIHGLYDKGRLEDALSYFHEMR 493 (536)
Q Consensus 434 ~~~li~~~~~~g~~~~A~~~~~~m~----~~g~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 493 (536)
++.|...|.+.+++.+|.++|.+.. ..|. .|+ ..+|..|...|.+.|+++.|.++.+...
T Consensus 412 l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 412 LNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 7888899999999999999988754 3332 233 4678999999999999999999988776
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.8e-08 Score=97.08 Aligned_cols=244 Identities=15% Similarity=0.112 Sum_probs=176.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHh----cCC---
Q 048749 187 NEKTYGILLNRYAAAHMVEEAIGVFDRRKEF-----G-ELDDLS-AFQNLLLWLCRYKHVEVAETFFESE----KNE--- 252 (536)
Q Consensus 187 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~----~~~--- 252 (536)
-..+...+...|...|+++.|+.+++...+. | ..|... ..+.+...|...+++++|..+|+.+ ...
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3456666889999999999999999887654 2 123333 3344677888999999999988884 111
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHHc---
Q 048749 253 -FGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKS-----K-CEPDS-VTYATFVNALTKKGKLGTALRLFQAMWEK--- 321 (536)
Q Consensus 253 -~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~--- 321 (536)
.+.-..+++.|...|.+.|++++|...++...+- | ..|.+ ..++.+...|+..+++++|..+++...+.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 1223456788888999999999998888776541 2 12233 23566777889999999999999876653
Q ss_pred CCCC----CHhhHHHHHHHHHhcCChHHHHHHHHHHHHC----CC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048749 322 GRKP----DVVTCNCIIDALCFKKRIPEALEVLREMKNR----GC--LP-NVTTYNSLIKHLCKIKRMETVYEYLDEMEQ 390 (536)
Q Consensus 322 g~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~--~p-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 390 (536)
-..+ -..+++.|...|.+.|++++|+++|+++... +- .+ ....++.|...|.+.++.++|.++|.+...
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 1222 2467999999999999999999999988543 11 12 245677888899999999999999987643
Q ss_pred cCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHH
Q 048749 391 KNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEME 458 (536)
Q Consensus 391 ~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 458 (536)
-...+.|+ .+-...+|..|...|.+.|+++.|.++.+...
T Consensus 438 i~~~~g~~----------------------------~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 438 IMKLCGPD----------------------------HPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHhCCC----------------------------CCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 21101121 13346789999999999999999999988776
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.4e-05 Score=77.90 Aligned_cols=390 Identities=11% Similarity=0.107 Sum_probs=195.2
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhc
Q 048749 124 LIVNVINRYRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAA 201 (536)
Q Consensus 124 ~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~ 201 (536)
.+.+++.+...++++|++.|..+.+.+ +.|...|.-+.-.-++.|+++.....-.... .+.....|..+..++.-.
T Consensus 79 Hv~gl~~R~dK~Y~eaiKcy~nAl~~~--~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~ 156 (700)
T KOG1156|consen 79 HVLGLLQRSDKKYDEAIKCYRNALKIE--KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLL 156 (700)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 344555554445666666666655543 3445555444444445555554444433333 233444566666666666
Q ss_pred CCHHHHHHHHHHHHHcC-CCCCHHHHHHHH------HHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 048749 202 HMVEEAIGVFDRRKEFG-ELDDLSAFQNLL------LWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVY 274 (536)
Q Consensus 202 g~~~~A~~~~~~m~~~g-~~~~~~~~~~ll------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 274 (536)
|+...|..+.+...+.- -.|+...+.... ....+.|.++.|.+.+......+......-..-...+.+.++++
T Consensus 157 g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lE 236 (700)
T KOG1156|consen 157 GEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLE 236 (700)
T ss_pred HHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHH
Confidence 66666666666665443 234444443322 22345566666666655544333333333344445556667777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCCHhHHH-HHHHHHHHc---CCCCCHhhHHHHHHHHHhcCChHHHHHH
Q 048749 275 EAKRFWKDIIKSKCEPDSVTYATFV-NALTKKGKLGTAL-RLFQAMWEK---GRKPDVVTCNCIIDALCFKKRIPEALEV 349 (536)
Q Consensus 275 ~A~~~~~~m~~~g~~~~~~~~~~li-~~~~~~g~~~~a~-~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~A~~~ 349 (536)
+|..++..++..+ ||...|...+ .++.+-.+.-+++ .+|....+. ...|-....+. .....-.+..-.+
T Consensus 237 eA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsv----l~~eel~~~vdky 310 (700)
T KOG1156|consen 237 EAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSV----LNGEELKEIVDKY 310 (700)
T ss_pred hHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHH----hCcchhHHHHHHH
Confidence 7777777666553 4544444433 3332222222222 444444332 01111111110 0011112223334
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhcCC--------CCCCcHHHHHHHHH--hc---CCC
Q 048749 350 LREMKNRGCLPNVTTYNSLIKHLCKIKRMET----VYEYLDEMEQKNG--------SCLPNEITFNYLLK--SL---KKP 412 (536)
Q Consensus 350 ~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~----A~~~~~~m~~~~~--------~~~p~~~~~~~ll~--~~---~~~ 412 (536)
+..+.+.|+++- +..+...|-.-...+- +..+...+...+. .-.|....|....- .+ +..
T Consensus 311 L~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~ 387 (700)
T KOG1156|consen 311 LRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDY 387 (700)
T ss_pred HHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccH
Confidence 445555565432 2222222221111111 1112222211110 01456555554433 22 445
Q ss_pred ChHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048749 413 EEVPWVLERMERNGCKMS-TDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHE 491 (536)
Q Consensus 413 ~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 491 (536)
+.|...++..... .|+ ...|..=.+.+...|++++|..++++..+.+ .||...-..-..-..+.++.++|.++...
T Consensus 388 ~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~sk 464 (700)
T KOG1156|consen 388 EVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSK 464 (700)
T ss_pred HHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHH
Confidence 5666666655553 444 4556666788999999999999999998865 34555444555666788999999999999
Q ss_pred HHHCCCC-CcHHH-----HH--HHHHHHHhhhhhhhhhHHHHHh
Q 048749 492 MRLKGMV-PEPRT-----GI--LVNDMNIKLKERGEQGKKVIKL 527 (536)
Q Consensus 492 m~~~g~~-p~~~t-----~~--~l~~~~~~~~~~~~a~~~~~~~ 527 (536)
+.+.|.. .+..+ |- --..++.+.+++++|.+.+..+
T Consensus 465 FTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 465 FTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred hhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 9888751 11111 11 1134555666666666655443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.9e-07 Score=87.34 Aligned_cols=216 Identities=12% Similarity=-0.043 Sum_probs=145.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048749 135 DWEAAYTFFKWVSREGDYSPG--SNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGV 210 (536)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~ 210 (536)
..+.++.-+..++......|+ ...|..+..+|.+.|++++|...|++.. .+.+...|+.+...+...|++++|++.
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 556677777777654323332 4568888888899999999999998877 667788999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 048749 211 FDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEP 290 (536)
Q Consensus 211 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 290 (536)
|++..+.. +.+..++..+..++...|++++|.+.|+......+.+.. .......+...++.++|...|++..... .+
T Consensus 121 ~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~-~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~ 197 (296)
T PRK11189 121 FDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY-RALWLYLAESKLDPKQAKENLKQRYEKL-DK 197 (296)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHccCCHHHHHHHHHHHHhhC-Cc
Confidence 99988754 445677888888888899999999998885433233331 1222222345678899999887655332 23
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC-CC-----CCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048749 291 DSVTYATFVNALTKKGKLGTALRLFQAMWEKG-RK-----PDVVTCNCIIDALCFKKRIPEALEVLREMKNRG 357 (536)
Q Consensus 291 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~-----p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 357 (536)
+...+ .......|+.+.+ +.+..+.+.. .. .....|..+...+.+.|++++|+..|++..+.+
T Consensus 198 ~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 198 EQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred cccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 32222 2223345665544 3444444321 11 123467778888888888888888888887764
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.8e-08 Score=91.21 Aligned_cols=222 Identities=14% Similarity=0.094 Sum_probs=173.9
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHH
Q 048749 129 INRYRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEE 206 (536)
Q Consensus 129 l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~ 206 (536)
++...|++..|.+-|+.++... +.+...|-.+..+|....+-++....|++.. ++.+..+|..-...+.-.+++++
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~--~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLD--PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcC--cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHH
Confidence 3445689999999999999875 2333347788889999999999999999987 67788899888888888999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048749 207 AIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKS 286 (536)
Q Consensus 207 A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 286 (536)
|..=|++.++.. +-+...|..+.-+..+.+.+++++..|++....+|.-+.+|+.....+...++++.|.+.|+..++.
T Consensus 413 A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 413 AIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 999999998765 4556778888888889999999999999998899999999999999999999999999999988764
Q ss_pred C-----CCCCHHHH--HHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048749 287 K-----CEPDSVTY--ATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKN 355 (536)
Q Consensus 287 g-----~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 355 (536)
. +..+...+ -.++-. --.+++..|.+++....+...+ ....|..|...-.+.|+.++|+++|++...
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2 11122211 111111 1247888888888888775322 345677888888888888888888887653
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.4e-07 Score=76.97 Aligned_cols=196 Identities=12% Similarity=0.024 Sum_probs=104.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 048749 192 GILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLG 271 (536)
Q Consensus 192 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g 271 (536)
..|.-.|.+.|+...|.+-+++.++.. +.+..++..+...|.+.|..+.|.+-|+...+.-+-+-.+.|.....+|..|
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCC
Confidence 334445555555555555555555543 3334455555555555555555555555533333444555555555555556
Q ss_pred CHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHH
Q 048749 272 NVYEAKRFWKDIIKSK-CEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVL 350 (536)
Q Consensus 272 ~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 350 (536)
.+++|...|++....- ..--..+|..+.-+..+.|+.+.|...|++..+..-. ...+...+.....+.|++-.|...+
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHH
Confidence 6666666665555432 1111235555555555666666666666665554211 2334455555556666666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048749 351 REMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQ 390 (536)
Q Consensus 351 ~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 390 (536)
+.....+. ++..+.-..|..--..|+.+.+-++=..+..
T Consensus 197 ~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 197 ERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 66555444 5555555555555556666665555555544
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.7e-06 Score=81.65 Aligned_cols=60 Identities=8% Similarity=0.058 Sum_probs=40.2
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHCCCCC--C----HHHHHHHH--HHHHhcCCHHHHHHHHHHHHHC
Q 048749 436 VILKLYVNWDCEDKVRHTWEEMEKKGMGP--D----QRSYTVMI--HGLYDKGRLEDALSYFHEMRLK 495 (536)
Q Consensus 436 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~----~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~ 495 (536)
....++...|+.+.|..+++.+....-.+ . ..+-..++ .++...|+.++|.+.+...+..
T Consensus 269 ~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 269 HAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 56777888999999999999887632110 1 11222223 3456889999999988877653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=8.2e-07 Score=83.15 Aligned_cols=95 Identities=16% Similarity=0.016 Sum_probs=47.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh
Q 048749 260 MNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCF 339 (536)
Q Consensus 260 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 339 (536)
|..+...|...|+.++|...|++..+.. +.+...|+.+...+...|++++|...|+...+.. +-+..++..+..++..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 4444444555555555555555554443 2334455555555555555555555555555431 1123344444455555
Q ss_pred cCChHHHHHHHHHHHHC
Q 048749 340 KKRIPEALEVLREMKNR 356 (536)
Q Consensus 340 ~g~~~~A~~~~~~m~~~ 356 (536)
.|++++|.+.|+...+.
T Consensus 145 ~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 145 GGRYELAQDDLLAFYQD 161 (296)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 55555555555555443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.2e-06 Score=80.55 Aligned_cols=332 Identities=11% Similarity=0.082 Sum_probs=173.7
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCC----------------------HHHHHHHHH
Q 048749 156 SNVFNAILDVLGRARRFVELIQVFDEMP-DLVNEKTYGILLNRYAAAHM----------------------VEEAIGVFD 212 (536)
Q Consensus 156 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~li~~~~~~g~----------------------~~~A~~~~~ 212 (536)
...|++|.+-|.+.|.++.|.++|++.. ...++.-|+.+.++|++-.. ++-.+.-|+
T Consensus 248 g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e 327 (835)
T KOG2047|consen 248 GFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFE 327 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHH
Confidence 3568888888889999999998888765 44555566666666654322 111222222
Q ss_pred HHHHcCC-----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCC------CHHHHHHHHHHHHhcCCHHH
Q 048749 213 RRKEFGE-----------LDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGY------DIKTMNIILNGWCVLGNVYE 275 (536)
Q Consensus 213 ~m~~~g~-----------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~ 275 (536)
.+...+. +.++..|..-+. +..|+..+....+.+....+.| -...|..+...|-..|+++.
T Consensus 328 ~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~ 405 (835)
T KOG2047|consen 328 SLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDD 405 (835)
T ss_pred HHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHH
Confidence 2222110 011111111111 1223344444445443222222 23467888888888899999
Q ss_pred HHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC-----------C------CHhhHHHHHH
Q 048749 276 AKRFWKDIIKSKCEPD---SVTYATFVNALTKKGKLGTALRLFQAMWEKGRK-----------P------DVVTCNCIID 335 (536)
Q Consensus 276 A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-----------p------~~~~~~~li~ 335 (536)
|..+|++..+-..+-- ..+|......=.+..+++.|+++.+.....-.. + +..+|...++
T Consensus 406 aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~D 485 (835)
T KOG2047|consen 406 ARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYAD 485 (835)
T ss_pred HHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHH
Confidence 9999888876542211 245555555556677788888877765543111 1 1224455555
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcH-HHHHHHHH----hcC
Q 048749 336 ALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNE-ITFNYLLK----SLK 410 (536)
Q Consensus 336 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~-~~~~~ll~----~~~ 410 (536)
.--..|-++....+++.+.+..+- ++...-....-+-.+.-+++++++|++-+..- ..|+. ..|+..|. .|+
T Consensus 486 leEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LF--k~p~v~diW~tYLtkfi~ryg 562 (835)
T KOG2047|consen 486 LEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLF--KWPNVYDIWNTYLTKFIKRYG 562 (835)
T ss_pred HHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccC--CCccHHHHHHHHHHHHHHHhc
Confidence 555667777777788887765443 22111111112334455777777777665544 33443 23443333 333
Q ss_pred --CCChHHHHHHHHHHCCCCCCHHH--HHHHHHHHHccCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHH
Q 048749 411 --KPEEVPWVLERMERNGCKMSTDT--YNVILKLYVNWDCEDKVRHTWEEMEKKGMGPD--QRSYTVMIHGLYDKGRLED 484 (536)
Q Consensus 411 --~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~ 484 (536)
+.+.+..+|++..+ |++|...- |......--+.|-...|+.++++.... +++. ...||..|.--...=-+..
T Consensus 563 g~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~ 640 (835)
T KOG2047|consen 563 GTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPR 640 (835)
T ss_pred CCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcc
Confidence 35677788888777 66654322 222222222456667777777765432 2222 1345555543332222233
Q ss_pred HHHHHHHHHH
Q 048749 485 ALSYFHEMRL 494 (536)
Q Consensus 485 A~~~~~~m~~ 494 (536)
...+|++.++
T Consensus 641 TR~iYekaIe 650 (835)
T KOG2047|consen 641 TREIYEKAIE 650 (835)
T ss_pred cHHHHHHHHH
Confidence 3444444444
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.6e-07 Score=76.34 Aligned_cols=203 Identities=11% Similarity=0.042 Sum_probs=160.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 048749 158 VFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCR 235 (536)
Q Consensus 158 ~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 235 (536)
+...+.-.|.+.|+...|..-+++.. ++.+..+|..+...|.+.|..+.|.+-|++..+.. +.+..+.|.....+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 45566677888999999999999887 66777889999999999999999999999888765 5567788888888999
Q ss_pred cCCHHHHHHHHHHhc--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 048749 236 YKHVEVAETFFESEK--NEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALR 313 (536)
Q Consensus 236 ~~~~~~a~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 313 (536)
.|.+++|...|++.. .....-..+|..+.-+..+.|+.+.|...|++..+.. +-...+.-.+.....+.|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHH
Confidence 999999999998842 2344456678888888889999999999999888765 2334567778888889999999999
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 048749 314 LFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTY 365 (536)
Q Consensus 314 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 365 (536)
+++.....+. ++....-..|..--..|+-+.+-++=..+... -|...-|
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~ 243 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEY 243 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHH
Confidence 9988888765 78888878888888889988887776666543 3444433
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.6e-06 Score=81.74 Aligned_cols=196 Identities=9% Similarity=-0.069 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHhCC----CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH---
Q 048749 157 NVFNAILDVLGRARRFVELIQVFDEMP----DLVNE-KTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQN--- 228 (536)
Q Consensus 157 ~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~--- 228 (536)
..|..+...+...|+.+.+...+.... ...+. .........+...|++++|.+++++..+.. +.|...+..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~ 85 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLG 85 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHH
Confidence 344444444545555555444444332 11121 122222334455666666666666665542 333333331
Q ss_pred HHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048749 229 LLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKL 308 (536)
Q Consensus 229 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 308 (536)
+.......+..+.+.+.+.......+........+...+...|++++|.+.+++..+.. +.+...+..+...+...|++
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~ 164 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRF 164 (355)
T ss_pred HHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCH
Confidence 11111123344444444443222223333444455556666777777777777766654 33455566666666677777
Q ss_pred hHHHHHHHHHHHcCC-CCCH--hhHHHHHHHHHhcCChHHHHHHHHHHH
Q 048749 309 GTALRLFQAMWEKGR-KPDV--VTCNCIIDALCFKKRIPEALEVLREMK 354 (536)
Q Consensus 309 ~~a~~~~~~m~~~g~-~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~ 354 (536)
++|..++++...... .++. ..|..+...+...|++++|..++++..
T Consensus 165 ~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 165 KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 777777666655321 1222 233455666667777777777777664
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.3e-05 Score=69.80 Aligned_cols=383 Identities=9% Similarity=0.059 Sum_probs=214.9
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 048749 124 LIVNVINRYRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHM 203 (536)
Q Consensus 124 ~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~ 203 (536)
..++-....-|++++|+..+..+.... .++...+-.+.-.+.-.|.+.+|..+-++.. .+.-.-..|+..-.+.++
T Consensus 61 lWia~C~fhLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~--k~pL~~RLlfhlahklnd 136 (557)
T KOG3785|consen 61 LWIAHCYFHLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQYIEAKSIAEKAP--KTPLCIRLLFHLAHKLND 136 (557)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHHHHHHHHHHhhCC--CChHHHHHHHHHHHHhCc
Confidence 334444444579999999999988764 5666777777766677888999998888875 333344455555556666
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHH
Q 048749 204 VEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNI-ILNGWCVLGNVYEAKRFWKD 282 (536)
Q Consensus 204 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~ 282 (536)
-++-..+...+.+.- ..-.+|.....-.-.+++|.+++.++... .|.....|. +.-+|.+..-++-+.++++-
T Consensus 137 Ek~~~~fh~~LqD~~-----EdqLSLAsvhYmR~HYQeAIdvYkrvL~d-n~ey~alNVy~ALCyyKlDYydvsqevl~v 210 (557)
T KOG3785|consen 137 EKRILTFHSSLQDTL-----EDQLSLASVHYMRMHYQEAIDVYKRVLQD-NPEYIALNVYMALCYYKLDYYDVSQEVLKV 210 (557)
T ss_pred HHHHHHHHHHHhhhH-----HHHHhHHHHHHHHHHHHHHHHHHHHHHhc-ChhhhhhHHHHHHHHHhcchhhhHHHHHHH
Confidence 666655555444311 11223333333344567777777775332 233333333 33345666667777766665
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhc--CCH---------------------------------hHHHHHHHHHHHcCCCCCH
Q 048749 283 IIKSKCEPDSVTYATFVNALTKK--GKL---------------------------------GTALRLFQAMWEKGRKPDV 327 (536)
Q Consensus 283 m~~~g~~~~~~~~~~li~~~~~~--g~~---------------------------------~~a~~~~~~m~~~g~~p~~ 327 (536)
..+.- +-+..+.|.......+. |+. +.|++++--+.+ +.|
T Consensus 211 YL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~--~IP-- 285 (557)
T KOG3785|consen 211 YLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMK--HIP-- 285 (557)
T ss_pred HHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHh--hCh--
Confidence 55431 22223333332222221 221 222222222221 111
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHhcCC--CCCCc
Q 048749 328 VTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIK-------RMETVYEYLDEMEQKNG--SCLPN 398 (536)
Q Consensus 328 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~-------~~~~A~~~~~~m~~~~~--~~~p~ 398 (536)
..-..|+--|.+.+++++|..+.+++.-. .|-....-.++ ++..| .+.-|.+.|.-.-+.+. ...|.
T Consensus 286 EARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv--~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpG 361 (557)
T KOG3785|consen 286 EARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVV--FAALGQETGSREHLKIAQQFFQLVGESALECDTIPG 361 (557)
T ss_pred HhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHH--HHHhhhhcCcHHHHHHHHHHHHHhcccccccccccc
Confidence 12233444577888888888777665321 12222222222 22222 24445555554433331 02344
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHH-HHHHH
Q 048749 399 EITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVM-IHGLY 477 (536)
Q Consensus 399 ~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-i~~~~ 477 (536)
..+..+.+--+-+.+++.-.+..+...=...|...| .+..+++..|++.+|.++|-.+....++ |..+|.++ .++|.
T Consensus 362 RQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi 439 (557)
T KOG3785|consen 362 RQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYI 439 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHH
Confidence 444444444445556666555555554333344444 4678888999999999999877655444 66677655 46788
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCcHHH-HHHHHHHHHhhhhhhhhhHHHHHhhhc
Q 048749 478 DKGRLEDALSYFHEMRLKGMVPEPRT-GILVNDMNIKLKERGEQGKKVIKLTSL 530 (536)
Q Consensus 478 ~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~l~~~~~~~~~~~~a~~~~~~~~~~ 530 (536)
++++++.|++++-++- -..+..+ ..++..-|.+.+++-=+.+.+..+...
T Consensus 440 ~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 440 RNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred hcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 9999999987755443 3334444 677888899999998788877776544
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.1e-06 Score=75.48 Aligned_cols=252 Identities=12% Similarity=0.055 Sum_probs=129.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048749 135 DWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFD 212 (536)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 212 (536)
+...|.+.|-.+....-++.|+.....+.+.+...|+.++|+..|+... ++-+......-.-.+.+.|+.++...+..
T Consensus 211 ~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~ 290 (564)
T KOG1174|consen 211 KHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMD 290 (564)
T ss_pred ccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHH
Confidence 3334444444443333356677777777777777777777777777665 32222222222223334455554444444
Q ss_pred HHH----------------------------------HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHH
Q 048749 213 RRK----------------------------------EFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIK 258 (536)
Q Consensus 213 ~m~----------------------------------~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 258 (536)
.+. +.. +.+...|..-..++...++.+.|.-.|+....--+.+..
T Consensus 291 ~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~ 369 (564)
T KOG1174|consen 291 YLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLE 369 (564)
T ss_pred HHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHH
Confidence 433 322 222223333334445555555555555554333344555
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hcCCHhHHHHHHHHHHHcCCCCCH-hhHHHHHH
Q 048749 259 TMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFV-NALT-KKGKLGTALRLFQAMWEKGRKPDV-VTCNCIID 335 (536)
Q Consensus 259 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li-~~~~-~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~ 335 (536)
+|.-|++.|...|.+.+|...-++..+.= +-+..+...+. ..|. ....-++|.++++.-.. +.|+. ...+.+..
T Consensus 370 ~Y~GL~hsYLA~~~~kEA~~~An~~~~~~-~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AE 446 (564)
T KOG1174|consen 370 IYRGLFHSYLAQKRFKEANALANWTIRLF-QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAE 446 (564)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHh-hcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHH
Confidence 56666666666666555554443332210 12222222221 1111 11123455555554443 23332 23445555
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048749 336 ALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 336 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 392 (536)
.+...|..++++.+++..... .||....+.|.+.+...+.+.+|++.|......+
T Consensus 447 L~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 447 LCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 666777777777777766543 4677777777777777777777777777766654
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.5e-05 Score=72.15 Aligned_cols=149 Identities=11% Similarity=0.103 Sum_probs=70.7
Q ss_pred ccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHH
Q 048749 168 RARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLS-AFQNLLLWLCRYKHVEVAETFF 246 (536)
Q Consensus 168 ~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~ll~~~~~~~~~~~a~~~~ 246 (536)
+.++.++|+..++.. +..+..+...-...+-+.|++++|+++|+.+.+.+.+.... .-..++.+-. ...+. +.
T Consensus 91 rlnk~Dealk~~~~~-~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~~-~~ 164 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGL-DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQVQ-LL 164 (652)
T ss_pred HcccHHHHHHHHhcc-cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhHH-HH
Confidence 566667776666633 23344455555556666677777777777766655322111 1111111111 11111 22
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCC--HH-----HHHHHHHHHHhcCCHhHHH
Q 048749 247 ESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKS-------KCEPD--SV-----TYATFVNALTKKGKLGTAL 312 (536)
Q Consensus 247 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~~~--~~-----~~~~li~~~~~~g~~~~a~ 312 (536)
+.....-..+-..+....-.+...|++.+|+++++...+. +-.-+ .. .-.-|.-++-..|+.++|.
T Consensus 165 q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~ 244 (652)
T KOG2376|consen 165 QSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS 244 (652)
T ss_pred HhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 2222111112223333344455677777777777766321 10111 11 1122333455667777777
Q ss_pred HHHHHHHHcC
Q 048749 313 RLFQAMWEKG 322 (536)
Q Consensus 313 ~~~~~m~~~g 322 (536)
++|...++..
T Consensus 245 ~iy~~~i~~~ 254 (652)
T KOG2376|consen 245 SIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHhc
Confidence 7777777763
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.8e-09 Score=61.25 Aligned_cols=33 Identities=36% Similarity=0.788 Sum_probs=25.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048749 461 GMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMR 493 (536)
Q Consensus 461 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 493 (536)
|+.||..||++||.+|++.|++++|.++|++|.
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677777777777777777777777777777773
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.3e-05 Score=85.02 Aligned_cols=367 Identities=11% Similarity=0.003 Sum_probs=189.4
Q ss_pred HHHHHccCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 048749 163 LDVLGRARRFVELIQVFDEMPDLVN-EKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEV 241 (536)
Q Consensus 163 i~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~ 241 (536)
...+...|++.+|............ ..............|+++.+..+++.+.......+..........+...|++++
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~ 427 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSE 427 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHH
Confidence 3445556666666655555541110 011111223344556777666666554221111222222333444556778888
Q ss_pred HHHHHHHhcCCC-------CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCH
Q 048749 242 AETFFESEKNEF-------GYDI--KTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDS----VTYATFVNALTKKGKL 308 (536)
Q Consensus 242 a~~~~~~~~~~~-------~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~ 308 (536)
+..++....... .+.. .....+...+...|++++|...+++..+.-...+. ...+.+...+...|++
T Consensus 428 a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~ 507 (903)
T PRK04841 428 VNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGEL 507 (903)
T ss_pred HHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCH
Confidence 877776642111 1111 12222334455688888888888776653111121 2344555566778888
Q ss_pred hHHHHHHHHHHHcCCC-----CCHhhHHHHHHHHHhcCChHHHHHHHHHHHH----CCCC--C-CHHHHHHHHHHHHhcC
Q 048749 309 GTALRLFQAMWEKGRK-----PDVVTCNCIIDALCFKKRIPEALEVLREMKN----RGCL--P-NVTTYNSLIKHLCKIK 376 (536)
Q Consensus 309 ~~a~~~~~~m~~~g~~-----p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~--p-~~~~~~~li~~~~~~~ 376 (536)
++|...+++.....-. ....++..+...+...|++++|...+++... .|.. + ....+..+...+...|
T Consensus 508 ~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G 587 (903)
T PRK04841 508 ARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWA 587 (903)
T ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc
Confidence 8888888777653111 1123444556667778888888888776543 2211 1 1233444555566678
Q ss_pred CHHHHHHHHHHHHhcCCCCCCcHHH--HHH---HHHhcCCCChHHHHHHHHHHC----CCCCCH--HHHHHHHHHHHccC
Q 048749 377 RMETVYEYLDEMEQKNGSCLPNEIT--FNY---LLKSLKKPEEVPWVLERMERN----GCKMST--DTYNVILKLYVNWD 445 (536)
Q Consensus 377 ~~~~A~~~~~~m~~~~~~~~p~~~~--~~~---ll~~~~~~~~a~~~~~~~~~~----~~~~~~--~~~~~li~~~~~~g 445 (536)
++++|...+.+.........+.... +.. +....++.+++.+.++..... +..... ......+..+...|
T Consensus 588 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 667 (903)
T PRK04841 588 RLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTG 667 (903)
T ss_pred CHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCC
Confidence 8888888877765432111122111 111 111235555666655554331 111000 00011223444577
Q ss_pred ChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCcH-HHHHHHHHHHHhhhhh
Q 048749 446 CEDKVRHTWEEMEKKGMGPD---QRSYTVMIHGLYDKGRLEDALSYFHEMRLK----GMVPEP-RTGILVNDMNIKLKER 517 (536)
Q Consensus 446 ~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~t~~~l~~~~~~~~~~ 517 (536)
+.+.|...+........... ...+..+..++...|++++|..++++.... |..++. .+...+..++.+.|+.
T Consensus 668 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~ 747 (903)
T PRK04841 668 DKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRK 747 (903)
T ss_pred CHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCH
Confidence 88888777666543211111 111344556677778888888888777653 333322 3466677777788888
Q ss_pred hhhhHHHHHhhh
Q 048749 518 GEQGKKVIKLTS 529 (536)
Q Consensus 518 ~~a~~~~~~~~~ 529 (536)
++|.+.+.+..+
T Consensus 748 ~~A~~~L~~Al~ 759 (903)
T PRK04841 748 SEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHHHHHH
Confidence 888777776543
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.7e-07 Score=84.20 Aligned_cols=66 Identities=15% Similarity=0.151 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 048749 428 KMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRL-EDALSYFHEMRL 494 (536)
Q Consensus 428 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~ 494 (536)
.++..+.+.+..++...|++++|.+++.+..+.+ +-|..+...+|.+....|+. +.+.+++.++..
T Consensus 198 ~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 198 GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp --SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 3455666666666666666666666666655442 22445555566655555655 445566666554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.80 E-value=9.7e-06 Score=71.41 Aligned_cols=301 Identities=13% Similarity=0.071 Sum_probs=143.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC-CCCCHHHHHH-HHHHHHhcCCHHHHHHHHH
Q 048749 135 DWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP-DLVNEKTYGI-LLNRYAAAHMVEEAIGVFD 212 (536)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~-li~~~~~~g~~~~A~~~~~ 212 (536)
++..|+++...-.+.. +.+......+...|....++..|-+.++.+. ..|...-|.. -...+-+.+.+..|+.+..
T Consensus 25 ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~ 102 (459)
T KOG4340|consen 25 RYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAF 102 (459)
T ss_pred hHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 5666666666554432 2255555666666666666666666666665 3333333322 1233445556666666655
Q ss_pred HHHHcCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 048749 213 RRKEFGELDDLSAFQNLLLWL--CRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEP 290 (536)
Q Consensus 213 ~m~~~g~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 290 (536)
.|... ++...-..-+.+. ...+++..+..+.++.... .+..+.+...-...+.|+++.|.+-|+...+-+---
T Consensus 103 ~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e--n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq 177 (459)
T KOG4340|consen 103 LLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE--NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ 177 (459)
T ss_pred HhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC--CccchhccchheeeccccHHHHHHHHHHHHhhcCCC
Confidence 55431 1111111111111 2234444555555554321 122222222223335566666666665555432222
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhh----HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 048749 291 DSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVT----CNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYN 366 (536)
Q Consensus 291 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 366 (536)
....|+..+ +..+.|+++.|+++..+++++|+...+.. -+-.+++ ...|+.. .|...+ -+..+|
T Consensus 178 pllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgNt~-------~lh~Sa---l~eAfN 245 (459)
T KOG4340|consen 178 PLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGNTL-------VLHQSA---LVEAFN 245 (459)
T ss_pred chhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccchH-------HHHHHH---HHHHhh
Confidence 234444333 33345556666666666665554321110 0000000 0000000 000000 012233
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHH--HHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 048749 367 SLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNY--LLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNW 444 (536)
Q Consensus 367 ~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~--ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 444 (536)
.-...+.+.|+++.|.+-+-.|.-... ...|.+|..- +..+-++..+..+-+..+.... +-...||..++-.||+.
T Consensus 246 LKaAIeyq~~n~eAA~eaLtDmPPRaE-~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKN 323 (459)
T KOG4340|consen 246 LKAAIEYQLRNYEAAQEALTDMPPRAE-EELDPVTLHNQALMNMDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKN 323 (459)
T ss_pred hhhhhhhhcccHHHHHHHhhcCCCccc-ccCCchhhhHHHHhcccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhh
Confidence 333445677888888888877754432 3445555543 3344455666655555555543 34467888888888888
Q ss_pred CChhHHHHHHHH
Q 048749 445 DCEDKVRHTWEE 456 (536)
Q Consensus 445 g~~~~A~~~~~~ 456 (536)
.-++.|-+++.+
T Consensus 324 eyf~lAADvLAE 335 (459)
T KOG4340|consen 324 EYFDLAADVLAE 335 (459)
T ss_pred HHHhHHHHHHhh
Confidence 878777777654
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.78 E-value=8.5e-05 Score=74.02 Aligned_cols=370 Identities=12% Similarity=0.071 Sum_probs=198.7
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHH
Q 048749 152 YSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELD-DLSAFQN 228 (536)
Q Consensus 152 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~ 228 (536)
+..|...|..+.-++..+|+++.+.+.|++.. .......|+.+...|...|.-..|+.+++.-....-.| |...+-.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 56678888888888888888888888888866 44556678888888888888888888887655433223 3333322
Q ss_pred HHHHHH-hcCCHHHHHHHHHHhcC---C--CCCCHHHHHHHHHHHH-----------hcCCHHHHHHHHHHHHHCC-CCC
Q 048749 229 LLLWLC-RYKHVEVAETFFESEKN---E--FGYDIKTMNIILNGWC-----------VLGNVYEAKRFWKDIIKSK-CEP 290 (536)
Q Consensus 229 ll~~~~-~~~~~~~a~~~~~~~~~---~--~~~~~~~~~~li~~~~-----------~~g~~~~A~~~~~~m~~~g-~~~ 290 (536)
.-..|. +.+.++++..+-.+... + -......|-.+.-+|. +.....++.+.+++..+.+ ..|
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp 478 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP 478 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 223332 23444444443333211 0 0112222333333332 1112345555666655543 222
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH-CCCC----------
Q 048749 291 DSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKN-RGCL---------- 359 (536)
Q Consensus 291 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~---------- 359 (536)
++.- .+.--|+..++++.|++..++..+.+-.-+...|..+.-.+...+++.+|+.+.+...+ .|..
T Consensus 479 ~~if--~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 479 LVIF--YLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHI 556 (799)
T ss_pred hHHH--HHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhh
Confidence 2222 22233455566666666666666654444566666666666666666666666654432 1110
Q ss_pred --------CCHHHHHHHHHHHHh-----------------------cCCHHHHHHHHHH-----------------HHhc
Q 048749 360 --------PNVTTYNSLIKHLCK-----------------------IKRMETVYEYLDE-----------------MEQK 391 (536)
Q Consensus 360 --------p~~~~~~~li~~~~~-----------------------~~~~~~A~~~~~~-----------------m~~~ 391 (536)
-...|...++..+-. ..+..+|.+.... +...
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s 636 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSS 636 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcc
Confidence 001111111111110 0011111111110 0111
Q ss_pred CCCCCCc------HHHHHHHHHh---cCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCC
Q 048749 392 NGSCLPN------EITFNYLLKS---LKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGM 462 (536)
Q Consensus 392 ~~~~~p~------~~~~~~ll~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 462 (536)
.....|+ ...|...-.. .+..+++...+.+..+.- +.....|......+...|...+|.+.|......
T Consensus 637 ~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l-- 713 (799)
T KOG4162|consen 637 TVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL-- 713 (799)
T ss_pred cccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--
Confidence 1001222 1122222222 244455554444444332 335666777777788888888888888877765
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHCCCCCcHHHHHHHHHHHHhhhhhhhhhHHHHHh
Q 048749 463 GP-DQRSYTVMIHGLYDKGRLEDALS--YFHEMRLKGMVPEPRTGILVNDMNIKLKERGEQGKKVIKL 527 (536)
Q Consensus 463 ~p-~~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~g~~p~~~t~~~l~~~~~~~~~~~~a~~~~~~~ 527 (536)
.| ++.+..++...+.+.|+..-|.. ++.++.+-+ .-++..|.-+...+.+.|+.++|.+-+..-
T Consensus 714 dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 714 DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 34 35677788888888887777777 788887643 224666888888888888888887776654
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.78 E-value=3e-05 Score=70.03 Aligned_cols=221 Identities=13% Similarity=0.114 Sum_probs=140.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-------CHhHHHHHHHHHHHcCCCCCHhh-HH
Q 048749 260 MNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKG-------KLGTALRLFQAMWEKGRKPDVVT-CN 331 (536)
Q Consensus 260 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-------~~~~a~~~~~~m~~~g~~p~~~~-~~ 331 (536)
--.|+-.|.+.+++.+|..+.+++. +.++.-|-.-.-..+..| .+.-|.+.|+..-..+..-|... -.
T Consensus 288 RlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQ 363 (557)
T KOG3785|consen 288 RLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQ 363 (557)
T ss_pred hhhheeeecccccHHHHHHHHhhcC----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchH
Confidence 3445556889999999999887764 222222211111122222 24566666665555555444332 34
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhc-C
Q 048749 332 CIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSL-K 410 (536)
Q Consensus 332 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~-~ 410 (536)
++..++.-..++++.+-+++.+...=...|...+| +.++++..|++.+|.++|-.+.... .-|..+|.+++..| .
T Consensus 364 smAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~---ikn~~~Y~s~LArCyi 439 (557)
T KOG3785|consen 364 SMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPE---IKNKILYKSMLARCYI 439 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChh---hhhhHHHHHHHHHHHH
Confidence 55556666778899998888887664444555555 7789999999999999998774432 25678888887766 4
Q ss_pred CCChHHHHHHHHHHCCCCCCHHHHHHH-HHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048749 411 KPEEVPWVLERMERNGCKMSTDTYNVI-LKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYF 489 (536)
Q Consensus 411 ~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 489 (536)
+.+...-.|+.|.+...+.+..+...+ ..-|-+++.+--|-+.|+++... .|++..|. |+-....-+|
T Consensus 440 ~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnWe---------GKRGACaG~f 508 (557)
T KOG3785|consen 440 RNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENWE---------GKRGACAGLF 508 (557)
T ss_pred hcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCccccC---------CccchHHHHH
Confidence 444555566777776655555555444 46788899999999999998876 57777664 3333344455
Q ss_pred HHHHHCCCCC
Q 048749 490 HEMRLKGMVP 499 (536)
Q Consensus 490 ~~m~~~g~~p 499 (536)
..+....-.|
T Consensus 509 ~~l~~~~~~~ 518 (557)
T KOG3785|consen 509 RQLANHKTDP 518 (557)
T ss_pred HHHHcCCCCC
Confidence 5555443333
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.8e-07 Score=83.46 Aligned_cols=246 Identities=12% Similarity=0.028 Sum_probs=116.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048749 134 FDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVFDR 213 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 213 (536)
|++..++.-.+ ..... -..+......+.+++...|+++.++.-...-. .|.......+...+...++-+.++.-+++
T Consensus 15 G~Y~~~i~e~~-~~~~~-~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~ 91 (290)
T PF04733_consen 15 GNYQQCINEAS-LKSFS-PENKLERDFYQYRSYIALGQYDSVLSEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKE 91 (290)
T ss_dssp T-HHHHCHHHH-CHTST-CHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHH
T ss_pred hhHHHHHHHhh-ccCCC-chhHHHHHHHHHHHHHHcCChhHHHHHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 56666665444 22211 11223444555566666666654433332222 34444444444333333344444444443
Q ss_pred HHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 048749 214 RKEFGELD-DLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDS 292 (536)
Q Consensus 214 m~~~g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 292 (536)
....+... +..........+...|++++|.++++.. .+.......+..|.+.++++.|.+.++.|.+.+ .|.
T Consensus 92 ~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~ 164 (290)
T PF04733_consen 92 LLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDS 164 (290)
T ss_dssp CCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCH
T ss_pred HHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcH
Confidence 33322222 2222222223344556666666655432 345555566666666666666666666666432 222
Q ss_pred HHHHHHHHHHHh----cCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048749 293 VTYATFVNALTK----KGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSL 368 (536)
Q Consensus 293 ~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 368 (536)
+...+..++.. ...+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+..+.... +..+...+
T Consensus 165 -~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNl 241 (290)
T PF04733_consen 165 -ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANL 241 (290)
T ss_dssp -HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHH
T ss_pred -HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHH
Confidence 22233333322 23466666666665543 4456666666666666666666666666666544322 34444455
Q ss_pred HHHHHhcCCH-HHHHHHHHHHHhcC
Q 048749 369 IKHLCKIKRM-ETVYEYLDEMEQKN 392 (536)
Q Consensus 369 i~~~~~~~~~-~~A~~~~~~m~~~~ 392 (536)
|.+....|+. +.+.+++.++....
T Consensus 242 iv~~~~~gk~~~~~~~~l~qL~~~~ 266 (290)
T PF04733_consen 242 IVCSLHLGKPTEAAERYLSQLKQSN 266 (290)
T ss_dssp HHHHHHTT-TCHHHHHHHHHCHHHT
T ss_pred HHHHHHhCCChhHHHHHHHHHHHhC
Confidence 5555555555 44555666655543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.74 E-value=9.4e-06 Score=71.49 Aligned_cols=98 Identities=9% Similarity=-0.051 Sum_probs=53.5
Q ss_pred CCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCcHHHHHH
Q 048749 428 KMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGM-VPEPRTGIL 506 (536)
Q Consensus 428 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ 506 (536)
..|++|...+.-.-. .+++.+..+-+.-+.+.. +-...|+..++-.||++.-++.|-.++-+=....+ -.++..|.+
T Consensus 274 elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~L 351 (459)
T KOG4340|consen 274 ELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDL 351 (459)
T ss_pred cCCchhhhHHHHhcc-cCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHH
Confidence 345566554433222 233444444444455442 23467898999999999988888887665332211 123444555
Q ss_pred HHHHHHhhhhhhhhhHHHHHh
Q 048749 507 VNDMNIKLKERGEQGKKVIKL 527 (536)
Q Consensus 507 l~~~~~~~~~~~~a~~~~~~~ 527 (536)
+-......-..+++.+.+.++
T Consensus 352 LdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 352 LDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred HHHHHhCCCCHHHHHHHHHHH
Confidence 544444444555666555544
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.8e-08 Score=59.17 Aligned_cols=32 Identities=50% Similarity=1.002 Sum_probs=17.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048749 357 GCLPNVTTYNSLIKHLCKIKRMETVYEYLDEM 388 (536)
Q Consensus 357 g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m 388 (536)
|+.||..+|++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555554
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=0.00014 Score=80.26 Aligned_cols=332 Identities=14% Similarity=0.058 Sum_probs=205.4
Q ss_pred HHHccCCHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC------CCCH--HHHHHHHHHH
Q 048749 165 VLGRARRFVELIQVFDEMP---DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGE------LDDL--SAFQNLLLWL 233 (536)
Q Consensus 165 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------~~~~--~~~~~ll~~~ 233 (536)
.+...|+++.+...++.+. ...+..........+...|++++|..++....+.-- .+.. .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3455688888888888775 112222334445566778999999999987754310 1111 1222233455
Q ss_pred HhcCCHHHHHHHHHHhcCCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHH
Q 048749 234 CRYKHVEVAETFFESEKNEFGY-D----IKTMNIILNGWCVLGNVYEAKRFWKDIIKS----KC-EPDSVTYATFVNALT 303 (536)
Q Consensus 234 ~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~~~~~~~~~li~~~~ 303 (536)
...|+++.|...++......+. + ....+.+...+...|++++|...+++.... |- .....++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6789999999999884322221 2 134566667778899999999999887642 21 111234556667788
Q ss_pred hcCCHhHHHHHHHHHHHc----CCC--C-CHhhHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCC--CHHHHHHHHHHH
Q 048749 304 KKGKLGTALRLFQAMWEK----GRK--P-DVVTCNCIIDALCFKKRIPEALEVLREMKNR--GCLP--NVTTYNSLIKHL 372 (536)
Q Consensus 304 ~~g~~~~a~~~~~~m~~~----g~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p--~~~~~~~li~~~ 372 (536)
..|++++|...+++.... +.. + ....+..+...+...|++++|...+.+.... ...+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 999999999998887653 221 1 2233445566677789999999999887542 1112 233444566677
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCCcHH--HH-H----HHHHhcCCCChHHHHHHHHHHCCCCCC---HHHHHHHHHHHH
Q 048749 373 CKIKRMETVYEYLDEMEQKNGSCLPNEI--TF-N----YLLKSLKKPEEVPWVLERMERNGCKMS---TDTYNVILKLYV 442 (536)
Q Consensus 373 ~~~~~~~~A~~~~~~m~~~~~~~~p~~~--~~-~----~ll~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~ 442 (536)
...|+.++|.+.+............... .. . ......+..+.+...+........... ...+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 8899999999999888653210111110 00 0 111112344455555444332111111 112456777888
Q ss_pred ccCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048749 443 NWDCEDKVRHTWEEMEKK----GMGPD-QRSYTVMIHGLYDKGRLEDALSYFHEMRLKG 496 (536)
Q Consensus 443 ~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 496 (536)
..|+.++|...+++.... |..++ ..++..+..++.+.|+.++|...+.+..+..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999987653 33322 2355666678889999999999999988753
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.68 E-value=8.6e-05 Score=71.03 Aligned_cols=373 Identities=15% Similarity=0.063 Sum_probs=218.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048749 133 RFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGV 210 (536)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~ 210 (536)
.++++.|+..|-.++.-. ++|...|..-..+|.+.|++++|++=-.+-. .+.=...|+-...++.-.|++++|+.-
T Consensus 15 ~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~a 92 (539)
T KOG0548|consen 15 SGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILA 92 (539)
T ss_pred cccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHH
Confidence 479999999999999875 6689999999999999999999987555544 333345799999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH------hcCC----CCCCHHHHHHHHHHHHh----------c
Q 048749 211 FDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFES------EKNE----FGYDIKTMNIILNGWCV----------L 270 (536)
Q Consensus 211 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~------~~~~----~~~~~~~~~~li~~~~~----------~ 270 (536)
|.+-++.. +.|...++.+..++.... .+.+.|.. +... .......|..++..+-+ -
T Consensus 93 y~~GL~~d-~~n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d 168 (539)
T KOG0548|consen 93 YSEGLEKD-PSNKQLKTGLAQAYLEDY---AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLND 168 (539)
T ss_pred HHHHhhcC-CchHHHHHhHHHhhhHHH---HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccccc
Confidence 99988765 556677788887772110 01111111 1000 00111123333322211 1
Q ss_pred CCHHHHHHHHHH-----HHHC-------CCCC------------C----------HHHHHHHHHHHHhcCCHhHHHHHHH
Q 048749 271 GNVYEAKRFWKD-----IIKS-------KCEP------------D----------SVTYATFVNALTKKGKLGTALRLFQ 316 (536)
Q Consensus 271 g~~~~A~~~~~~-----m~~~-------g~~~------------~----------~~~~~~li~~~~~~g~~~~a~~~~~ 316 (536)
..+..|.-.+.. +... +..| | ..-...+.++..+..+++.+++-+.
T Consensus 169 ~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~ 248 (539)
T KOG0548|consen 169 PRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYA 248 (539)
T ss_pred HHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 111112111110 0000 1111 0 1224567777788888999999888
Q ss_pred HHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHH
Q 048749 317 AMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSL-------IKHLCKIKRMETVYEYLDEME 389 (536)
Q Consensus 317 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-------i~~~~~~~~~~~A~~~~~~m~ 389 (536)
...+.. -+..-++....+|...|.+.+....-+...+.|-. ....|+.| -.+|.+.++++.|...|.+..
T Consensus 249 ~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaL 325 (539)
T KOG0548|consen 249 KALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKAL 325 (539)
T ss_pred HHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHh
Confidence 888764 46666777778888998888887777776665533 22333333 335666778999999999887
Q ss_pred hcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHH
Q 048749 390 QKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMST-DTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRS 468 (536)
Q Consensus 390 ~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 468 (536)
... ..|+..+ .+...+++.+..+...-. .|.. .-.-.-...+.+.|++..|...+.++++.. +-|...
T Consensus 326 te~--Rt~~~ls------~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~l 394 (539)
T KOG0548|consen 326 TEH--RTPDLLS------KLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARL 394 (539)
T ss_pred hhh--cCHHHHH------HHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHH
Confidence 766 4555322 111112222111111111 1211 111122455666777777777777777664 335566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHH-HHHHHHHHHhhhhhhhhhHHHHHh
Q 048749 469 YTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRT-GILVNDMNIKLKERGEQGKKVIKL 527 (536)
Q Consensus 469 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~l~~~~~~~~~~~~a~~~~~~~ 527 (536)
|..-.-+|.+.|.+.+|+.=.+..++. .|+... |..=..++.-..+++.+.+.+.+-
T Consensus 395 YsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 395 YSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666777777777777666665553 444433 333344444444555555555443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.4e-05 Score=84.25 Aligned_cols=237 Identities=13% Similarity=0.044 Sum_probs=166.9
Q ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--C-----CCCHHHHHHHHHHHHhcCCHHHHH
Q 048749 136 WEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--D-----LVNEKTYGILLNRYAAAHMVEEAI 208 (536)
Q Consensus 136 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~-----~~~~~~~~~li~~~~~~g~~~~A~ 208 (536)
++.|.++ +...+. -+.+...|-..+....+.+++++|++++++.. . ..-...|.++++.-..-|.-+...
T Consensus 1441 pesaeDf-erlvrs--sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~ 1517 (1710)
T KOG1070|consen 1441 PESAEDF-ERLVRS--SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLK 1517 (1710)
T ss_pred CcCHHHH-HHHHhc--CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHH
Confidence 3344444 444443 25677889999999999999999999999877 1 112347888888888888888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 048749 209 GVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKC 288 (536)
Q Consensus 209 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 288 (536)
++|++..+.- .....|..|...|.+.+..++|-++++.|.+.+......|...+..+.+.++-+.|..++.+..+.-.
T Consensus 1518 kVFeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lP 1595 (1710)
T KOG1070|consen 1518 KVFERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLP 1595 (1710)
T ss_pred HHHHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcc
Confidence 8998888742 33446778888888888888888888888777777778888888888888888888888887765421
Q ss_pred CC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHH
Q 048749 289 EP-DSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPN--VTTY 365 (536)
Q Consensus 289 ~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~ 365 (536)
+. .+....-.+..-.+.|+.+.+..+|+..... .+--...|+..|++-.+.|+.+.+..+|++....+..|- -..|
T Consensus 1596 k~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfff 1674 (1710)
T KOG1070|consen 1596 KQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFF 1674 (1710)
T ss_pred hhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHH
Confidence 11 1222333444456778888888888888776 333456788888888888888888888888887766653 2334
Q ss_pred HHHHHHHHhcCCH
Q 048749 366 NSLIKHLCKIKRM 378 (536)
Q Consensus 366 ~~li~~~~~~~~~ 378 (536)
...+..=-+.|+-
T Consensus 1675 KkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1675 KKWLEYEKSHGDE 1687 (1710)
T ss_pred HHHHHHHHhcCch
Confidence 4444333333443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.65 E-value=0.0004 Score=71.33 Aligned_cols=379 Identities=10% Similarity=0.047 Sum_probs=194.2
Q ss_pred CCCCCHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCC-HHHHHH---HHHhCC--------C
Q 048749 117 ELTLTDDLIVNVINRYRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARR-FVELIQ---VFDEMP--------D 184 (536)
Q Consensus 117 ~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~---~~~~~~--------~ 184 (536)
|..+...++..+=++ ++...-+.+++.....| ..|+.++|++..+|...++ .+.-++ .++... +
T Consensus 837 gq~~~deLv~EvEkR--NRLklLlp~LE~~i~eG--~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRD 912 (1666)
T KOG0985|consen 837 GQFPVDELVEEVEKR--NRLKLLLPWLESLIQEG--SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRD 912 (1666)
T ss_pred ccCChHHHHHHHHhh--hhHHHHHHHHHHHHhcc--CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccC
Confidence 333444444443333 46777778888888776 5689999999999876543 221110 011000 0
Q ss_pred C--------------------CCHHHHHHHHHHHHhcCC---HHHHH--------HHHHHHHHcCCC--CCHHHHHHHHH
Q 048749 185 L--------------------VNEKTYGILLNRYAAAHM---VEEAI--------GVFDRRKEFGEL--DDLSAFQNLLL 231 (536)
Q Consensus 185 ~--------------------~~~~~~~~li~~~~~~g~---~~~A~--------~~~~~m~~~g~~--~~~~~~~~ll~ 231 (536)
+ .....|....+.+....+ |.+++ ++++.....+++ .|+......+.
T Consensus 913 P~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVk 992 (1666)
T KOG0985|consen 913 PHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVK 992 (1666)
T ss_pred CceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHH
Confidence 0 011223344444444444 22332 344444444432 45666667788
Q ss_pred HHHhcCCHHHHHHHHHHh---cCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048749 232 WLCRYKHVEVAETFFESE---KNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKL 308 (536)
Q Consensus 232 ~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 308 (536)
++...+-..+-.++++++ .+.+..+...-|.||-...+... ....++.+++-.-+ .|++ ...+...+-+
T Consensus 993 AfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~-trVm~YI~rLdnyD-a~~i------a~iai~~~Ly 1064 (1666)
T KOG0985|consen 993 AFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADR-TRVMEYINRLDNYD-APDI------AEIAIENQLY 1064 (1666)
T ss_pred HHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcCh-HHHHHHHHHhccCC-chhH------HHHHhhhhHH
Confidence 888888888888888885 23344555555666555544332 23333333332221 1111 1112222223
Q ss_pred hHHHHHHHHHHHcC---------------------CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 048749 309 GTALRLFQAMWEKG---------------------RKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNS 367 (536)
Q Consensus 309 ~~a~~~~~~m~~~g---------------------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 367 (536)
++|..+|+.....+ ....+.+|+.+..+-.+.|...+|++-|-+. -|+..|.-
T Consensus 1065 EEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~e 1138 (1666)
T KOG0985|consen 1065 EEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLE 1138 (1666)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHH
Confidence 33333332211000 0123456777777777777777777666443 26677788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 048749 368 LIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCE 447 (536)
Q Consensus 368 li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 447 (536)
+|+...+.|.+++..+++....++. ..|... +.++-+|.+.+..-++ .+.-.-||......+.+-|...|.+
T Consensus 1139 Vi~~a~~~~~~edLv~yL~MaRkk~--~E~~id--~eLi~AyAkt~rl~el----E~fi~gpN~A~i~~vGdrcf~~~~y 1210 (1666)
T KOG0985|consen 1139 VIDVASRTGKYEDLVKYLLMARKKV--REPYID--SELIFAYAKTNRLTEL----EEFIAGPNVANIQQVGDRCFEEKMY 1210 (1666)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhh--cCccch--HHHHHHHHHhchHHHH----HHHhcCCCchhHHHHhHHHhhhhhh
Confidence 8888888888888888777666665 444433 2444455443332221 1111234444445555555555555
Q ss_pred hHHHHHHHHHHHC--------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHH
Q 048749 448 DKVRHTWEEMEKK--------------------GMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRTGILV 507 (536)
Q Consensus 448 ~~A~~~~~~m~~~--------------------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 507 (536)
+.|.-++...... .-..+..||..+-.+|...+.+.-| +|...++.....-..-+
T Consensus 1211 ~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeel 1285 (1666)
T KOG0985|consen 1211 EAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEEL 1285 (1666)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHH
Confidence 5554444322110 0012445555555555555444332 23333344444456667
Q ss_pred HHHHHhhhhhhhhhHHHHH
Q 048749 508 NDMNIKLKERGEQGKKVIK 526 (536)
Q Consensus 508 ~~~~~~~~~~~~a~~~~~~ 526 (536)
+..+...|-++|...++..
T Consensus 1286 i~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1286 IEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred HHHHHhcCcHHHHHHHHHh
Confidence 7777777777766665543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.8e-05 Score=71.29 Aligned_cols=200 Identities=10% Similarity=0.045 Sum_probs=92.7
Q ss_pred CHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH--HHHHHH
Q 048749 171 RFVELIQVFDEMP--DLVNEKTYGILLNRYAAAH-MVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHV--EVAETF 245 (536)
Q Consensus 171 ~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~--~~a~~~ 245 (536)
+.++|+.+.+++. .+.+..+|+.--.++...| +++++++.++++.+.. +.+..+|+.-...+.+.|.. +.+..+
T Consensus 52 ~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~el~~ 130 (320)
T PLN02789 52 RSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANKELEF 130 (320)
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHHHHHH
Confidence 3334444444333 2333334443333333333 3445555555444433 22333333333233333331 334444
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CC----HhHHHHHHHHH
Q 048749 246 FESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKK---GK----LGTALRLFQAM 318 (536)
Q Consensus 246 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~----~~~a~~~~~~m 318 (536)
++.+...-+-+..+|+...-.+.+.|+++++++.++++++.+ +.|..+|+.....+.+. |. .++.+++...+
T Consensus 131 ~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~a 209 (320)
T PLN02789 131 TRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDA 209 (320)
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHH
Confidence 444333334455556555555555666666666666666554 23444554444443332 11 23455555455
Q ss_pred HHcCCCCCHhhHHHHHHHHHhc----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048749 319 WEKGRKPDVVTCNCIIDALCFK----KRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCK 374 (536)
Q Consensus 319 ~~~g~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 374 (536)
+... +-|...|+.+...+... +...+|.+.+.+..+.++ .+......|++.|+.
T Consensus 210 I~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~ 267 (320)
T PLN02789 210 ILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCE 267 (320)
T ss_pred HHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHh
Confidence 5432 22455565555555542 334456666666554332 255566666666664
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.3e-06 Score=83.18 Aligned_cols=222 Identities=12% Similarity=0.029 Sum_probs=181.6
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048749 153 SPGSNVFNAILDVLGRARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLW 232 (536)
Q Consensus 153 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 232 (536)
+|--..-..+...+...|-...|..+|++.. .|.-+|.+|+..|+..+|..+...-.+ -+||+..|..+.+.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 3444455667888999999999999999986 899999999999999999999988877 37999999999998
Q ss_pred HHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 048749 233 LCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTAL 312 (536)
Q Consensus 233 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 312 (536)
.....-++.|.++.+....+ +-..+.....+.++++++.+.|+.-.+.. +.-..+|-..-.+..+.++++.|.
T Consensus 467 ~~d~s~yEkawElsn~~sar------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHH
Confidence 88888889999998875332 11222222235799999999999877655 456678888888889999999999
Q ss_pred HHHHHHHHcCCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 048749 313 RLFQAMWEKGRKP-DVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQK 391 (536)
Q Consensus 313 ~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 391 (536)
+.|..-... .| +...||.+-.+|.+.|+-.+|...+.+..+.+ .-+...|..-+....+.|.+++|++.+.++...
T Consensus 540 ~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 540 KAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 999988874 44 45679999999999999999999999999887 336667777788889999999999999988665
Q ss_pred C
Q 048749 392 N 392 (536)
Q Consensus 392 ~ 392 (536)
.
T Consensus 617 ~ 617 (777)
T KOG1128|consen 617 R 617 (777)
T ss_pred h
Confidence 4
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.2e-05 Score=71.09 Aligned_cols=181 Identities=11% Similarity=0.027 Sum_probs=102.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 048749 190 TYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYK-HVEVAETFFESEKNEFGYDIKTMNIILNGWC 268 (536)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 268 (536)
+++.+-..+...++.++|+.++.++++.. +-+..+|+.-..++...| .+++++..++.+....+.+..+|+.....+.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~ 117 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHH
Confidence 33444444556677788888888877654 333445555555555555 4677777777754444556666665554455
Q ss_pred hcCCH--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc---CCh
Q 048749 269 VLGNV--YEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFK---KRI 343 (536)
Q Consensus 269 ~~g~~--~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~ 343 (536)
+.|.. ++++.+++.+.+.. +.+..+|+....++.+.|+++++++.++++++.+.. +...|+.....+.+. |..
T Consensus 118 ~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccc
Confidence 55542 55666666666655 446667776666666777777777777777765443 444555544444333 111
Q ss_pred ----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048749 344 ----PEALEVLREMKNRGCLPNVTTYNSLIKHLCK 374 (536)
Q Consensus 344 ----~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 374 (536)
++++++..++...... |...|+-+...+..
T Consensus 196 ~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 196 EAMRDSELKYTIDAILANPR-NESPWRYLRGLFKD 229 (320)
T ss_pred cccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhc
Confidence 2344444444443221 44555555444443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.6e-05 Score=80.46 Aligned_cols=135 Identities=12% Similarity=0.055 Sum_probs=98.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCC---CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhh
Q 048749 254 GYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKS-KCE---PDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVT 329 (536)
Q Consensus 254 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 329 (536)
|-+...|-..|......++.++|.++.++.... ++. --...|.++++.-...|.-+...++|+++.+. .-...+
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 556667888888888888888888888877642 111 11246777777777777778888888888774 223456
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 048749 330 CNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQK 391 (536)
Q Consensus 330 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 391 (536)
|..|...|.+.+..++|-++++.|.+.= .-....|...+..+.+.++-+.|..++.+..+.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~ 1593 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKS 1593 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh
Confidence 7888888888888888888888886541 136678888888888888888888888888764
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.00031 Score=63.48 Aligned_cols=311 Identities=14% Similarity=0.091 Sum_probs=185.4
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHhCCCCCCHHHHHHHH---HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHH
Q 048749 155 GSNVFNAILDVLGRARRFVELIQVFDEMPDLVNEKTYGILL---NRYAAAHMVEEAIGVFDRRKEFGELDDLSAF-QNLL 230 (536)
Q Consensus 155 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-~~ll 230 (536)
++.-.--+.+.+...|++.+|+.-|..... .|+..|.++. ..|...|+-.-|+.=+.+.++. +||-..- ..-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve-~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVE-GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHc-CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 444555677778888888888888887762 3334454444 4677888888888878777764 5664322 1223
Q ss_pred HHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhH
Q 048749 231 LWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGT 310 (536)
Q Consensus 231 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 310 (536)
..+.+.|.++.|..=|+.+...-+ +. |...+|..-+.... ........+..+.-.|+...
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~-s~-------------~~~~eaqskl~~~~------e~~~l~~ql~s~~~~GD~~~ 173 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEP-SN-------------GLVLEAQSKLALIQ------EHWVLVQQLKSASGSGDCQN 173 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCC-Cc-------------chhHHHHHHHHhHH------HHHHHHHHHHHHhcCCchhh
Confidence 456678888888887777543312 11 11111111110000 00112223444556777888
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048749 311 ALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQ 390 (536)
Q Consensus 311 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 390 (536)
|+.....+.+. .+.|...|..-..+|...|++..|+.=++...+..-. ++.++..+-..+...|+.+.++...++..+
T Consensus 174 ai~~i~~llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 174 AIEMITHLLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred HHHHHHHHHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 88877777775 3447777777777888888888887766665544322 556666667777778888888887777776
Q ss_pred cCCCCCCcHHHHHHHHHh-------cCCC---------ChHHHHHHHHHHCCCCCCHH---HHHHHHHHHHccCChhHHH
Q 048749 391 KNGSCLPNEITFNYLLKS-------LKKP---------EEVPWVLERMERNGCKMSTD---TYNVILKLYVNWDCEDKVR 451 (536)
Q Consensus 391 ~~~~~~p~~~~~~~ll~~-------~~~~---------~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~ 451 (536)
.+ ||....-..... +... -++.+..+...+........ .+..+-.++...|++-+|+
T Consensus 252 ld----pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAi 327 (504)
T KOG0624|consen 252 LD----PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAI 327 (504)
T ss_pred cC----cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHH
Confidence 44 554322111111 1111 11112222222322111122 3334455666778888999
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048749 452 HTWEEMEKKGMGPD-QRSYTVMIHGLYDKGRLEDALSYFHEMRLKG 496 (536)
Q Consensus 452 ~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 496 (536)
+...+..+. .|| ..++.-=..+|.-...++.|+.=|+...+.+
T Consensus 328 qqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 328 QQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 988888875 454 6777777788888888999998888887743
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.00082 Score=65.25 Aligned_cols=208 Identities=12% Similarity=0.087 Sum_probs=131.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCCCCCCHHHHHH--HHHHHH--hcCCHHHHH
Q 048749 133 RFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMPDLVNEKTYGI--LLNRYA--AAHMVEEAI 208 (536)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--li~~~~--~~g~~~~A~ 208 (536)
.+++++|.+..+.+.... +.+..++..-+-++.+.+++++|+.+.+.-... .+++. +=.+|| +.+..++|+
T Consensus 25 ~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~---~~~~~~~fEKAYc~Yrlnk~Deal 99 (652)
T KOG2376|consen 25 NGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL---LVINSFFFEKAYCEYRLNKLDEAL 99 (652)
T ss_pred chHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh---hhcchhhHHHHHHHHHcccHHHHH
Confidence 468999999999998763 667778888888899999999999777765511 12222 234454 678899999
Q ss_pred HHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048749 209 GVFDRRKEFGELDD-LSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDI--KTMNIILNGWCVLGNVYEAKRFWKDIIK 285 (536)
Q Consensus 209 ~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~ 285 (536)
..++ |..++ ..+...-...+.+.|++++|..+|+.+.+.-.++. ..-..++.+-. +... +.+..
T Consensus 100 k~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a-------~l~~-~~~q~ 166 (652)
T KOG2376|consen 100 KTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA-------ALQV-QLLQS 166 (652)
T ss_pred HHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH-------hhhH-HHHHh
Confidence 8887 33333 33555566778899999999999999743323322 22222222211 1111 12222
Q ss_pred CCCCCCHHHHHHHH---HHHHhcCCHhHHHHHHHHHHHcC-------CCCCHh-------hHHHHHHHHHhcCChHHHHH
Q 048749 286 SKCEPDSVTYATFV---NALTKKGKLGTALRLFQAMWEKG-------RKPDVV-------TCNCIIDALCFKKRIPEALE 348 (536)
Q Consensus 286 ~g~~~~~~~~~~li---~~~~~~g~~~~a~~~~~~m~~~g-------~~p~~~-------~~~~li~~~~~~g~~~~A~~ 348 (536)
....| ..+|..+. ..+...|++.+|+++++...+.+ -.-+.. +-..+...+-..|+.++|..
T Consensus 167 v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~ 245 (652)
T KOG2376|consen 167 VPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASS 245 (652)
T ss_pred ccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 22233 33444443 34567899999999999884332 111111 22345556778899999999
Q ss_pred HHHHHHHCCCC
Q 048749 349 VLREMKNRGCL 359 (536)
Q Consensus 349 ~~~~m~~~g~~ 359 (536)
++.......+.
T Consensus 246 iy~~~i~~~~~ 256 (652)
T KOG2376|consen 246 IYVDIIKRNPA 256 (652)
T ss_pred HHHHHHHhcCC
Confidence 99998877543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=8.2e-05 Score=70.51 Aligned_cols=252 Identities=15% Similarity=0.101 Sum_probs=160.9
Q ss_pred HHHHHhccCCHHHHHHHHHHHHh---CCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC-----CCCCHHHHHHHHHH
Q 048749 126 VNVINRYRFDWEAAYTFFKWVSR---EGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP-----DLVNEKTYGILLNR 197 (536)
Q Consensus 126 ~~~l~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~li~~ 197 (536)
+..|.+.+-++..-.++|+.+.. .++ .|... ++.-=.-..++.+++..-+.++ +.++...+...+.+
T Consensus 209 i~~L~raGydp~gM~~ff~rl~~~~~~~~-~~p~y----l~THPlp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~ 283 (484)
T COG4783 209 ITTLVRAGYDPQGMPEFFERLADQLRYGG-QPPEY----LLTHPLPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRA 283 (484)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHHhcCC-CCChH----HhcCCCchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHH
Confidence 33444444466666667766653 221 22211 1111112346677777777777 45666667777765
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048749 198 YAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAK 277 (536)
Q Consensus 198 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 277 (536)
......-..+-.++.+-.+. .-...-|..-+ .+...|.++.|+..+..+....+.|...+....+.+.+.++.++|.
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~-~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~ 360 (484)
T COG4783 284 KYEALPNQQAADLLAKRSKR--GGLAAQYGRAL-QTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAI 360 (484)
T ss_pred HhccccccchHHHHHHHhCc--cchHHHHHHHH-HHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Confidence 55444333333333332221 11222333333 3457788888888888876666778888888888888899999999
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048749 278 RFWKDIIKSKCEPD-SVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNR 356 (536)
Q Consensus 278 ~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 356 (536)
+.++.+.... |+ ...+-.+..+|.+.|++.+|..+++..... .+-|+..|..|..+|...|+..++..-..+
T Consensus 361 e~~~kal~l~--P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE---- 433 (484)
T COG4783 361 ERLKKALALD--PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAE---- 433 (484)
T ss_pred HHHHHHHhcC--CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHH----
Confidence 8888888763 44 566667778888889888888888888776 445788888888889888888887655443
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Q 048749 357 GCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLL 406 (536)
Q Consensus 357 g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll 406 (536)
+|...|+++.|...+....+..+...|+..-+...+
T Consensus 434 --------------~~~~~G~~~~A~~~l~~A~~~~~~~~~~~aR~dari 469 (484)
T COG4783 434 --------------GYALAGRLEQAIIFLMRASQQVKLGFPDWARADARI 469 (484)
T ss_pred --------------HHHhCCCHHHHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence 355678888888888887776432334433333333
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.2e-05 Score=77.31 Aligned_cols=214 Identities=14% Similarity=0.091 Sum_probs=88.1
Q ss_pred HccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048749 167 GRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAET 244 (536)
Q Consensus 167 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~ 244 (536)
.+.|++.+|.-+|+... .+.+...|-.|......+++-..|+..+++..+.. +.|..+.-.|.-.|...|.-..|..
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHHH
Confidence 34455555555555443 44444455555555555555555555555544433 3334444444444444444444444
Q ss_pred HHHHh-cCCC-----C---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 048749 245 FFESE-KNEF-----G---YDIKTMNIILNGWCVLGNVYEAKRFWKDIIK-SKCEPDSVTYATFVNALTKKGKLGTALRL 314 (536)
Q Consensus 245 ~~~~~-~~~~-----~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 314 (536)
.++.. .... . ++...-+. ........+....++|-++.. .+..+|......|.-.|.-.|++++|.+-
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 44441 1000 0 00000000 111111122223333333322 22223444444444444445555555555
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 048749 315 FQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPN-VTTYNSLIKHLCKIKRMETVYEYLD 386 (536)
Q Consensus 315 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~A~~~~~ 386 (536)
|+..+.. -+-|..+||.|-..++...+.++|+..|.+..+. .|. +.+...|.-.|...|.+++|.+.|-
T Consensus 453 f~~AL~v-~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 453 FEAALQV-KPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHhc-CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 5554443 1223444555555555555555555555555443 232 1222223334445555555544443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.00042 Score=69.65 Aligned_cols=335 Identities=12% Similarity=0.100 Sum_probs=202.6
Q ss_pred CCCHHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCCCCC--------
Q 048749 119 TLTDDLIVNVINRY----RFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMPDLV-------- 186 (536)
Q Consensus 119 ~~~~~~~~~~l~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------- 186 (536)
..++.+-.++|... -|+.+.|.+-.+.+. +..+|..|..+|.+.++++-|.-.+-.|....
T Consensus 723 ~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a 795 (1416)
T KOG3617|consen 723 NCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRA 795 (1416)
T ss_pred ccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHH
Confidence 34555555565542 479999988777764 44699999999999999999888887776111
Q ss_pred ---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHH
Q 048749 187 ---NEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNII 263 (536)
Q Consensus 187 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 263 (536)
+..+=..+...-...|.+++|+.+|++-++.+ .|=..|-..|.+++|.++-+.-.. +. -..+|...
T Consensus 796 ~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DR-iH-Lr~Tyy~y 864 (1416)
T KOG3617|consen 796 QQNGEEDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDR-IH-LRNTYYNY 864 (1416)
T ss_pred HhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccc-ee-hhhhHHHH
Confidence 11222223333457799999999999988754 455667788999999998765321 11 12345555
Q ss_pred HHHHHhcCCHHHHHHHHHHH----------HHCC---------CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC
Q 048749 264 LNGWCVLGNVYEAKRFWKDI----------IKSK---------CEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRK 324 (536)
Q Consensus 264 i~~~~~~g~~~~A~~~~~~m----------~~~g---------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 324 (536)
..-+-..++.+.|++.|++. .... -..|...|.-...-+-..|+.+.|+.+|....+
T Consensus 865 A~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---- 940 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---- 940 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----
Confidence 55555677788888777542 2111 012334444445555567888888888876544
Q ss_pred CCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CCCc
Q 048749 325 PDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGS------CLPN 398 (536)
Q Consensus 325 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~------~~p~ 398 (536)
|-.++...|-.|+.++|-++-++-. |......|...|-..|++.+|..+|.+...-... ...+
T Consensus 941 -----~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~ 1009 (1416)
T KOG3617|consen 941 -----YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMK 1009 (1416)
T ss_pred -----hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 4566777788899999988776542 5566667889999999999999999876432100 0011
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHH--------HHHHC--CCCCCHHH
Q 048749 399 EITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWE--------EMEKK--GMGPDQRS 468 (536)
Q Consensus 399 ~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~--g~~p~~~~ 468 (536)
...+|..+. ....+...+-....+.|.. +...+..|-+.|.+.+|+++-= ++... .-..|+..
T Consensus 1010 d~L~nlal~--s~~~d~v~aArYyEe~g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~l 1082 (1416)
T KOG3617|consen 1010 DRLANLALM--SGGSDLVSAARYYEELGGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKL 1082 (1416)
T ss_pred HHHHHHHhh--cCchhHHHHHHHHHHcchh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHH
Confidence 111221111 1122222222233333311 2233445667777777665421 11112 22335566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 048749 469 YTVMIHGLYDKGRLEDALSYFHEMR 493 (536)
Q Consensus 469 ~~~li~~~~~~g~~~~A~~~~~~m~ 493 (536)
.+.-.+-++.+.++++|..++-...
T Consensus 1083 l~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1083 LRRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 6666666677777777777765544
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.00041 Score=66.54 Aligned_cols=86 Identities=6% Similarity=0.146 Sum_probs=63.3
Q ss_pred HHHHhhcCCCCCHHHHHHHHHhcc-CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC-CCCC
Q 048749 110 EKALNQCELTLTDDLIVNVINRYR-FDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP-DLVN 187 (536)
Q Consensus 110 ~~~l~~~~~~~~~~~~~~~l~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~ 187 (536)
++-++..+..++ ....++...+ ...+++++.++.+... ++.++..|..-|....+.++++..+.+|.+.. ...+
T Consensus 10 ~~rie~nP~di~--sw~~lire~qt~~~~~~R~~YEq~~~~--FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn 85 (656)
T KOG1914|consen 10 RERIEENPYDID--SWSQLIREAQTQPIDKVRETYEQLVNV--FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN 85 (656)
T ss_pred HHHHhcCCccHH--HHHHHHHHHccCCHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Confidence 444455544333 3333343322 3789999999999876 67789999999999999999999999999987 5567
Q ss_pred HHHHHHHHHHHH
Q 048749 188 EKTYGILLNRYA 199 (536)
Q Consensus 188 ~~~~~~li~~~~ 199 (536)
...|..-+..--
T Consensus 86 lDLW~lYl~YVR 97 (656)
T KOG1914|consen 86 LDLWKLYLSYVR 97 (656)
T ss_pred HhHHHHHHHHHH
Confidence 788888776444
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.00012 Score=76.64 Aligned_cols=241 Identities=10% Similarity=0.084 Sum_probs=168.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHH
Q 048749 184 DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNII 263 (536)
Q Consensus 184 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 263 (536)
.+.+...|..|+..+...+++++|.++.+...+.. +-....|-.+...+.+.++.+++..+ .+
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv----------------~~ 89 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL----------------NL 89 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh----------------hh
Confidence 45677788999999999999999999998766643 22233444444456666665554443 23
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCh
Q 048749 264 LNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRI 343 (536)
Q Consensus 264 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 343 (536)
+.......++.-+..+...|.+.+ -+..++..+..+|-+.|+.+++..+|+++.+.. +-|+.+.|.+...|... ++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence 333334444544444455555532 344578888999999999999999999999976 44788899999999988 99
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHH
Q 048749 344 PEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERME 423 (536)
Q Consensus 344 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~ 423 (536)
++|++++.+.... |...+++.++.+++.++.... |+.. +....+.+.+.
T Consensus 166 ~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~----~~d~------------d~f~~i~~ki~ 214 (906)
T PRK14720 166 EKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN----SDDF------------DFFLRIERKVL 214 (906)
T ss_pred HHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC----cccc------------hHHHHHHHHHH
Confidence 9999998887653 777789999999999998754 3322 12223333443
Q ss_pred H-CCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048749 424 R-NGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLY 477 (536)
Q Consensus 424 ~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 477 (536)
. .|..--..++-.+-..|-..++++++..+++.+.+..- -|.....-++.+|.
T Consensus 215 ~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~-~n~~a~~~l~~~y~ 268 (906)
T PRK14720 215 GHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDN-KNNKAREELIRFYK 268 (906)
T ss_pred hhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCC-cchhhHHHHHHHHH
Confidence 3 23344456777778888899999999999999998742 25566667777766
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.3e-05 Score=79.11 Aligned_cols=222 Identities=14% Similarity=0.130 Sum_probs=145.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048749 220 LDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFV 299 (536)
Q Consensus 220 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 299 (536)
+|--..-..+...+.+.|-...|..+|+++ ..|.-+|.+|+..|+..+|..+..+-.+. +||...|..+.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LG 464 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLG 464 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhh
Confidence 333334445566677777777777777753 34666777777777777777777776662 67777777777
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 048749 300 NALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRME 379 (536)
Q Consensus 300 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 379 (536)
+......-+++|+++.+....+ .-..+.....+.++++++.+.|+.-.+.+. .-..+|-.+-.+..+.++++
T Consensus 465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhhH
Confidence 7666666677777776654332 111111112236777777777776554421 24566766666777777777
Q ss_pred HHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 048749 380 TVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEK 459 (536)
Q Consensus 380 ~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 459 (536)
.|.+.|.....-. || +...||.+-.+|.+.|+..+|...+++..+
T Consensus 537 ~av~aF~rcvtL~----Pd-------------------------------~~eaWnNls~ayi~~~~k~ra~~~l~EAlK 581 (777)
T KOG1128|consen 537 AAVKAFHRCVTLE----PD-------------------------------NAEAWNNLSTAYIRLKKKKRAFRKLKEALK 581 (777)
T ss_pred HHHHHHHHHhhcC----CC-------------------------------chhhhhhhhHHHHHHhhhHHHHHHHHHHhh
Confidence 7777777766533 33 567778888888888888888888887777
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048749 460 KGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLK 495 (536)
Q Consensus 460 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 495 (536)
.+ .-+...|...+....+-|.+++|.+.+.+|...
T Consensus 582 cn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 582 CN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred cC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 65 335556666667777778888888877776653
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00076 Score=64.80 Aligned_cols=222 Identities=13% Similarity=0.075 Sum_probs=126.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHH--
Q 048749 134 FDWEAAYTFFKWVSREGDYSPG-SNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAI-- 208 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~-- 208 (536)
++++.|++--....+. .|+ +..|+....++.-.|++++|+..|.+-. ++.+...++-+..++.......+..
T Consensus 50 ~~~~~al~da~k~~~l---~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~ 126 (539)
T KOG0548|consen 50 GSYEKALKDATKTRRL---NPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTK 126 (539)
T ss_pred hhHHHHHHHHHHHHhc---CCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccC
Confidence 5788887766665553 444 7789999999999999999999999877 6677778888888772211000000
Q ss_pred -HHHHHHHHc---CCCCCHHHHHHHHHHHH----------hcCCHHHHHHHHHHh------c-------CCCCC------
Q 048749 209 -GVFDRRKEF---GELDDLSAFQNLLLWLC----------RYKHVEVAETFFESE------K-------NEFGY------ 255 (536)
Q Consensus 209 -~~~~~m~~~---g~~~~~~~~~~ll~~~~----------~~~~~~~a~~~~~~~------~-------~~~~~------ 255 (536)
.++...... .......+|..++..+- ...++..+...+... . ....|
T Consensus 127 p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 206 (539)
T KOG0548|consen 127 PYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHN 206 (539)
T ss_pred cHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCC
Confidence 011111000 00011112223322221 111111222111110 0 00011
Q ss_pred ------C----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 048749 256 ------D----------IKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMW 319 (536)
Q Consensus 256 ------~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 319 (536)
| ..-.-.+.++.-+..+++.|++-+....+.. -++.-++....+|...|.+.++...-....
T Consensus 207 ~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~ 284 (539)
T KOG0548|consen 207 GFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAV 284 (539)
T ss_pred CCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHH
Confidence 1 1124456677778888999999998887764 345555666678888888888887777776
Q ss_pred HcCCCCCHhhHH-------HHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 048749 320 EKGRKPDVVTCN-------CIIDALCFKKRIPEALEVLREMKNRGCLPN 361 (536)
Q Consensus 320 ~~g~~p~~~~~~-------~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 361 (536)
+.|.. ...-|+ .+..+|.+.++++.|+..|.+....-..|+
T Consensus 285 E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~ 332 (539)
T KOG0548|consen 285 EVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPD 332 (539)
T ss_pred HHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHH
Confidence 66543 222222 233466677888999999988765444443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.2e-05 Score=72.82 Aligned_cols=185 Identities=11% Similarity=-0.039 Sum_probs=105.6
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHH
Q 048749 154 PGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNE---KTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDL--SAF 226 (536)
Q Consensus 154 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~ 226 (536)
.....+..+...+.+.|++++|...|+++. .+.+. .++..+..++.+.|++++|+..|+++.+..-.... .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 345666777777777777777777777665 22222 35666777777777888888887777764311111 133
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048749 227 QNLLLWLCRY--------KHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATF 298 (536)
Q Consensus 227 ~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 298 (536)
..+..++.+. |+.+.|.+.++.+....+.+...+..+..... ... .. ......+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~----~~~------~~--------~~~~~~~ 172 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY----LRN------RL--------AGKELYV 172 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH----HHH------HH--------HHHHHHH
Confidence 3344444433 55666777766654333333333322211100 000 00 0011234
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCC--CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048749 299 VNALTKKGKLGTALRLFQAMWEKGR--KPDVVTCNCIIDALCFKKRIPEALEVLREMKNR 356 (536)
Q Consensus 299 i~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 356 (536)
...+.+.|++++|...++...+..- +.....+..+..++.+.|++++|..+++.+...
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5567777888888888877776521 123456777777888888888888877777654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00017 Score=73.94 Aligned_cols=215 Identities=13% Similarity=0.034 Sum_probs=148.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048749 134 FDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVF 211 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~ 211 (536)
.+...|+..|=...+.. ..=..+|..|...|....+...|.+.|++.- +..+...+......|++..+++.|..+.
T Consensus 472 K~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hhHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHH
Confidence 45666777676666643 2235679999999999889999999999987 6778889999999999999999999983
Q ss_pred HHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 048749 212 DRRKEFG-ELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEP 290 (536)
Q Consensus 212 ~~m~~~g-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 290 (536)
-..-+.. ...-...|....-.|.+.++...|..-|+...+--+.|...|..+..+|.+.|.+..|.++|.+.... .|
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP 627 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RP 627 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--Cc
Confidence 3222211 00111223334455678888999999998865555779999999999999999999999999888764 33
Q ss_pred CHHHHHH--HHHHHHhcCCHhHHHHHHHHHHHc------CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHH
Q 048749 291 DSVTYAT--FVNALTKKGKLGTALRLFQAMWEK------GRKPDVVTCNCIIDALCFKKRIPEALEVLREM 353 (536)
Q Consensus 291 ~~~~~~~--li~~~~~~g~~~~a~~~~~~m~~~------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 353 (536)
+. +|.. ..-..+..|++.+++..+...... +..--..++-.+...+.-.|-..+|.+++++-
T Consensus 628 ~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eks 697 (1238)
T KOG1127|consen 628 LS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKS 697 (1238)
T ss_pred Hh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 32 2332 233456789999999999887654 11112233333333444445444555555443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.6e-05 Score=70.70 Aligned_cols=188 Identities=8% Similarity=-0.109 Sum_probs=126.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHH---
Q 048749 185 LVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDL---SAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIK--- 258 (536)
Q Consensus 185 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--- 258 (536)
......+-.+...+...|++++|...|+++.... +.+. .++..+..++.+.|+++.|...++...+..+.+..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 4556678888888888999999999998887654 2222 45667778888889999999988886443332222
Q ss_pred HHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhH
Q 048749 259 TMNIILNGWCVL--------GNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTC 330 (536)
Q Consensus 259 ~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 330 (536)
++..+..++... |+.++|.+.|+.+.+.. +-+...+..+..... .... .. ...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~~~------~~--------~~~ 169 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LRNR------LA--------GKE 169 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HHHH------HH--------HHH
Confidence 455555555544 67788888888887653 122223322221111 0000 00 011
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048749 331 NCIIDALCFKKRIPEALEVLREMKNRGC-LP-NVTTYNSLIKHLCKIKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 331 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 392 (536)
..+...|.+.|++++|...++...+... .| ....+..+..++.+.|++++|..+++.+....
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 2456678899999999999999986532 12 35788899999999999999999999887654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.6e-05 Score=67.03 Aligned_cols=153 Identities=12% Similarity=0.038 Sum_probs=70.1
Q ss_pred HHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 048749 161 AILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKH 238 (536)
Q Consensus 161 ~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 238 (536)
.+-..+.-.|+-+....+..... .+.|....+..+....+.|++.+|+..|++..... ++|..+|+.+.-+|.+.|+
T Consensus 71 ~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 71 KLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccC
Confidence 33344444444444444444433 23333344444555555555555555555544433 4444455555555555555
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 048749 239 VEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLF 315 (536)
Q Consensus 239 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 315 (536)
++.|..-|.+..+-.+-+....|.|.-.|.-.|+.+.|..++......+ .-|...-..+.......|++++|.++.
T Consensus 150 ~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 150 FDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred hhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 5555544444333233344444444444444555555555554444333 223334444444444455555554443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.5e-05 Score=67.07 Aligned_cols=159 Identities=13% Similarity=0.067 Sum_probs=101.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 048749 192 GILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLG 271 (536)
Q Consensus 192 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g 271 (536)
..+-..+...|+-+....+....... .+.|....+.++....+.|++..|...+.+....-++|..+|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 44555566666666666655553332 23444455556677777777777777777766555677777777777777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHH
Q 048749 272 NVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLR 351 (536)
Q Consensus 272 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 351 (536)
++++|..-|.+..+.. .-+....+.|.-.+.-.|+.+.|..++......+.. |..+-..+.......|++++|.++..
T Consensus 149 r~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcc
Confidence 7777777777766653 223445566666666677777777777766665332 55556666666777777777776655
Q ss_pred HH
Q 048749 352 EM 353 (536)
Q Consensus 352 ~m 353 (536)
.-
T Consensus 227 ~e 228 (257)
T COG5010 227 QE 228 (257)
T ss_pred cc
Confidence 43
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.0026 Score=63.90 Aligned_cols=341 Identities=14% Similarity=0.084 Sum_probs=220.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCC--CCCCHHHHHHH
Q 048749 186 VNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNE--FGYDIKTMNII 263 (536)
Q Consensus 186 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~l 263 (536)
-+...|..+.-+....|+++.+.+.|++....- --....|..+-..+...|.-..|..+++..... -++|...+-..
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 466778888888888888888888888876532 345567777888888888888888888774222 23444444444
Q ss_pred HHHHH-hcCCHHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHhcC-----------CHhHHHHHHHHHHHcC-CCCC
Q 048749 264 LNGWC-VLGNVYEAKRFWKDIIKS--KC--EPDSVTYATFVNALTKKG-----------KLGTALRLFQAMWEKG-RKPD 326 (536)
Q Consensus 264 i~~~~-~~g~~~~A~~~~~~m~~~--g~--~~~~~~~~~li~~~~~~g-----------~~~~a~~~~~~m~~~g-~~p~ 326 (536)
-..|. +.+.+++++.+-.+.+.. +. ......|..+.-+|...- ...++++.+++..+.+ -.|+
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~ 479 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPL 479 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 44444 367777777777666651 11 122334444444444321 1356777888877753 3454
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------------
Q 048749 327 VVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGS------------ 394 (536)
Q Consensus 327 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~------------ 394 (536)
...|.++ -|+..++++.|.+...+..+.+..-+...|..+.-.+...+++.+|+.+.+...+.-+.
T Consensus 480 ~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~ 557 (799)
T KOG4162|consen 480 VIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIE 557 (799)
T ss_pred HHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhh
Confidence 4444443 47778899999999999998876778999999999999999999999999887665421
Q ss_pred -----CCCcHHHHHHHHHhcC--------------------------CCChHHH----HHHH----HHHCC---------
Q 048749 395 -----CLPNEITFNYLLKSLK--------------------------KPEEVPW----VLER----MERNG--------- 426 (536)
Q Consensus 395 -----~~p~~~~~~~ll~~~~--------------------------~~~~a~~----~~~~----~~~~~--------- 426 (536)
..--..|...++.-+. ...++.+ +... ....|
T Consensus 558 ~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~ 637 (799)
T KOG4162|consen 558 LTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSST 637 (799)
T ss_pred hhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccc
Confidence 0000111111111111 0111111 1111 11111
Q ss_pred CC--CC------HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 048749 427 CK--MS------TDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMV 498 (536)
Q Consensus 427 ~~--~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 498 (536)
.. |+ ...|....+.+.+.+..++|...+.+..... .-....|......+...|.+++|.+.|..... +.
T Consensus 638 ~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ld 714 (799)
T KOG4162|consen 638 VLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LD 714 (799)
T ss_pred ccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cC
Confidence 11 11 2345566778888999999998888777652 23455566666677888999999999998876 67
Q ss_pred CcHHH-HHHHHHHHHhhhhhhhhhH--HHHHhhhccC
Q 048749 499 PEPRT-GILVNDMNIKLKERGEQGK--KVIKLTSLGL 532 (536)
Q Consensus 499 p~~~t-~~~l~~~~~~~~~~~~a~~--~~~~~~~~g~ 532 (536)
|+.+- ...+..++.+.|+..-+.+ .++.+.+.++
T Consensus 715 P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp 751 (799)
T KOG4162|consen 715 PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP 751 (799)
T ss_pred CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC
Confidence 87655 8999999999998887777 7777766654
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.2e-05 Score=77.34 Aligned_cols=247 Identities=13% Similarity=0.056 Sum_probs=175.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048749 197 RYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEA 276 (536)
Q Consensus 197 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 276 (536)
-+.+.|++.+|.-.|+..++.. +-+...|..|.......++-..|+..+.+..+--+.+..+.-.|.-.|...|.-.+|
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHH
Confidence 4568899999999999988876 667889999999999999999999999997666677899999999999999999999
Q ss_pred HHHHHHHHHCCCC--------CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH-cCCCCCHhhHHHHHHHHHhcCChHHHH
Q 048749 277 KRFWKDIIKSKCE--------PDSVTYATFVNALTKKGKLGTALRLFQAMWE-KGRKPDVVTCNCIIDALCFKKRIPEAL 347 (536)
Q Consensus 277 ~~~~~~m~~~g~~--------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~A~ 347 (536)
++.++.-+....+ ++...-.. ..+.....+....++|-++.. .+..+|+.++..|--.|--.|++++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 9999887654311 00000000 122223345566666666654 455577788888888899999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcH--HHHHHHHHhc--CCCChHHHHHHHH-
Q 048749 348 EVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNE--ITFNYLLKSL--KKPEEVPWVLERM- 422 (536)
Q Consensus 348 ~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~--~~~~~ll~~~--~~~~~a~~~~~~~- 422 (536)
+.|+........ |..+||-|...++...+.++|+.-|.+..+. .|+. .-||.-|... +...+|.+.|-..
T Consensus 451 Dcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL----qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 451 DCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL----QPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc----CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 999999876433 7889999999999999999999999999984 4655 3466555543 3445555433322
Q ss_pred --HHCC------CCCCHHHHHHHHHHHHccCChhHHH
Q 048749 423 --ERNG------CKMSTDTYNVILKLYVNWDCEDKVR 451 (536)
Q Consensus 423 --~~~~------~~~~~~~~~~li~~~~~~g~~~~A~ 451 (536)
.+.+ ..++...|..|=.++.-.++.|.+.
T Consensus 526 ~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 526 SMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred HhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 2221 1123345555555555555555433
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.0012 Score=62.79 Aligned_cols=206 Identities=15% Similarity=0.091 Sum_probs=134.2
Q ss_pred CHHHHHHHHHHhc---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 048749 238 HVEVAETFFESEK---NEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRL 314 (536)
Q Consensus 238 ~~~~a~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 314 (536)
++.+++..-+.++ ..-.|+...+...+.+......-..+..++.+..+. .-...-|.. .-.+...|++++|+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~-A~~~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGR-ALQTYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHH-HHHHHHhcccchHHHH
Confidence 3444554444543 223466666666666544433333333333222221 112223333 3345577888888888
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 048749 315 FQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPN-VTTYNSLIKHLCKIKRMETVYEYLDEMEQKNG 393 (536)
Q Consensus 315 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 393 (536)
++.+... .+-|++......+.+.+.++.++|.+.++.+... .|+ ...+-.+.++|.+.|++.+|..+++......
T Consensus 329 l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~- 404 (484)
T COG4783 329 LQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND- 404 (484)
T ss_pred HHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-
Confidence 8887775 3445666667778888888888888888888775 344 5555667778888888888888888876655
Q ss_pred CCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048749 394 SCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMI 473 (536)
Q Consensus 394 ~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 473 (536)
+-|...|..|..+|...|+..++.....+
T Consensus 405 ----------------------------------p~dp~~w~~LAqay~~~g~~~~a~~A~AE----------------- 433 (484)
T COG4783 405 ----------------------------------PEDPNGWDLLAQAYAELGNRAEALLARAE----------------- 433 (484)
T ss_pred ----------------------------------CCCchHHHHHHHHHHHhCchHHHHHHHHH-----------------
Confidence 44778899999999999988887765443
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCcHHH
Q 048749 474 HGLYDKGRLEDALSYFHEMRLKGMVPEPRT 503 (536)
Q Consensus 474 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 503 (536)
+|...|+++.|...+....+. ++++..+
T Consensus 434 -~~~~~G~~~~A~~~l~~A~~~-~~~~~~~ 461 (484)
T COG4783 434 -GYALAGRLEQAIIFLMRASQQ-VKLGFPD 461 (484)
T ss_pred -HHHhCCCHHHHHHHHHHHHHh-ccCCcHH
Confidence 456789999999988888776 3334333
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=9.5e-05 Score=64.44 Aligned_cols=14 Identities=21% Similarity=0.408 Sum_probs=5.0
Q ss_pred hcCCHhHHHHHHHH
Q 048749 304 KKGKLGTALRLFQA 317 (536)
Q Consensus 304 ~~g~~~~a~~~~~~ 317 (536)
..|++++|...|+.
T Consensus 156 ~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 156 MQADYAQAIELWQK 169 (198)
T ss_pred HcCCHHHHHHHHHH
Confidence 33333333333333
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00015 Score=75.14 Aligned_cols=181 Identities=10% Similarity=0.022 Sum_probs=140.0
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 048749 152 YSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNL 229 (536)
Q Consensus 152 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 229 (536)
+..++..+-.|..+..+.|++++|+.+++... .+.+...+..+..++.+.+++++|+..+++..... +.+......+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~ 160 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE 160 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 67789999999999999999999999999988 66777888999999999999999999999998865 5567777788
Q ss_pred HHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHh
Q 048749 230 LLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLG 309 (536)
Q Consensus 230 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 309 (536)
..++.+.|++++|..+|+++....+.+..++..+...+.+.|+.++|...|+...+.- .+....|+..+ +++.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~~~~ 233 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------VDLN 233 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------HHHH
Confidence 8889999999999999999755545668899999999999999999999999987753 33445555443 3344
Q ss_pred HHHHHHHHHHHcC----CCCCHhhHHHHHHHHHhc
Q 048749 310 TALRLFQAMWEKG----RKPDVVTCNCIIDALCFK 340 (536)
Q Consensus 310 ~a~~~~~~m~~~g----~~p~~~~~~~li~~~~~~ 340 (536)
.-..+++++.-.+ ..........+|.-|.+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 234 ADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 4455566554432 333344455555555544
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.0048 Score=63.85 Aligned_cols=199 Identities=14% Similarity=0.092 Sum_probs=86.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048749 225 AFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTK 304 (536)
Q Consensus 225 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 304 (536)
.|..+..+-.+.|.+.+|.+-|-+. .|+..|.-+++...+.|.+++-.+++....+..-+|.+. +.||-+|++
T Consensus 1106 vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAk 1178 (1666)
T KOG0985|consen 1106 VWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAK 1178 (1666)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHH
Confidence 3444444444444444444333221 133444444444444444444444443333332222222 234444444
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048749 305 KGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEY 384 (536)
Q Consensus 305 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~ 384 (536)
.+++.+.++++ .-|+......+.+-|...|.++.|.-+|. ++.-|..|...+...|++..|.+.
T Consensus 1179 t~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~AVD~ 1242 (1666)
T KOG0985|consen 1179 TNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGAVDA 1242 (1666)
T ss_pred hchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHHH
Confidence 44444333322 12343444444444444444444443332 333455555666666666666655
Q ss_pred HHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHH
Q 048749 385 LDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEE 456 (536)
Q Consensus 385 ~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 456 (536)
-++. .+..||-.+--+|...++.. +..|-...+.....-..-++..|-..|-+++.+.+++.
T Consensus 1243 aRKA--------ns~ktWK~VcfaCvd~~EFr--lAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1243 ARKA--------NSTKTWKEVCFACVDKEEFR--LAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred hhhc--------cchhHHHHHHHHHhchhhhh--HHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 4433 24456666655554433221 11111122223334444555555555555555555443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.003 Score=60.85 Aligned_cols=367 Identities=10% Similarity=0.069 Sum_probs=191.1
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 048749 153 SPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLL 230 (536)
Q Consensus 153 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 230 (536)
+.|..+|+.||.-+... .++++++.++++. .+-....|..-|..-.+..+++...++|.+.+..- .+...|...+
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHH
Confidence 66999999999988776 9999999999998 56677899999999999999999999999988754 4455666666
Q ss_pred HHHHh-cCCHHH----HHHHHHHh--cCCCC-CCHHHHHHHHHH---------HHhcCCHHHHHHHHHHHHHCCCCC---
Q 048749 231 LWLCR-YKHVEV----AETFFESE--KNEFG-YDIKTMNIILNG---------WCVLGNVYEAKRFWKDIIKSKCEP--- 290 (536)
Q Consensus 231 ~~~~~-~~~~~~----a~~~~~~~--~~~~~-~~~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~~g~~~--- 290 (536)
.--.+ .|.... -.+.|+-. +.++. .+...|+..+.- |....+++...++++.+...-+.-
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 54333 233333 23334443 23332 233446665543 233445667777788777532110
Q ss_pred ---CHHHHHHHHHHHH-------hcCCHhHHHHHHHHHHHc--CCCCCHh---------------hHHHHHHH-------
Q 048749 291 ---DSVTYATFVNALT-------KKGKLGTALRLFQAMWEK--GRKPDVV---------------TCNCIIDA------- 336 (536)
Q Consensus 291 ---~~~~~~~li~~~~-------~~g~~~~a~~~~~~m~~~--g~~p~~~---------------~~~~li~~------- 336 (536)
|-.+|..=|+... +...+..|.++++++... |+..... .|..+|..
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~ 253 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLR 253 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcc
Confidence 1111211111111 223355666666665442 3211111 12112111
Q ss_pred ------------------------------------------HHhcCC-------hHHHHHHHHHHHHCCCCCCHHHHHH
Q 048749 337 ------------------------------------------LCFKKR-------IPEALEVLREMKNRGCLPNVTTYNS 367 (536)
Q Consensus 337 ------------------------------------------~~~~g~-------~~~A~~~~~~m~~~g~~p~~~~~~~ 367 (536)
+...|+ .+++..+++...+.-..-+..+|..
T Consensus 254 t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~ 333 (656)
T KOG1914|consen 254 TLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFA 333 (656)
T ss_pred cccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 2233333333222111111112211
Q ss_pred HHHHHHhc---CCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcC---CCChHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 048749 368 LIKHLCKI---KRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLK---KPEEVPWVLERMERNGCKM-STDTYNVILKL 440 (536)
Q Consensus 368 li~~~~~~---~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~---~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~ 440 (536)
+.+-=-.. +..+.....+++....-. ..|+ .+|...+.... -...|..+|.+..+.+..+ ++.++++++.-
T Consensus 334 ~a~~eE~~~~~n~~~~~~~~~~~ll~~~~-~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 334 LADYEESRYDDNKEKKVHEIYNKLLKIED-IDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY 411 (656)
T ss_pred HHhhHHHhcccchhhhhHHHHHHHHhhhc-cCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH
Confidence 11100000 013333333333333221 1122 22333333322 2345566777777766555 56666777776
Q ss_pred HHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHH--HHHHHHHHHhhhhhh
Q 048749 441 YVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRT--GILVNDMNIKLKERG 518 (536)
Q Consensus 441 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~l~~~~~~~~~~~ 518 (536)
||. ++..-|.++|+.-.+. +.-+..--...++-+..-|+-..|..+|++.+..++.||... |.-+++.=...|+..
T Consensus 412 ~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~ 489 (656)
T KOG1914|consen 412 YCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLN 489 (656)
T ss_pred Hhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHH
Confidence 664 5666777777764433 122233334555666666776777777777777766665433 666666666666666
Q ss_pred hhhHHHHH
Q 048749 519 EQGKKVIK 526 (536)
Q Consensus 519 ~a~~~~~~ 526 (536)
.+.++-.+
T Consensus 490 si~~lekR 497 (656)
T KOG1914|consen 490 SILKLEKR 497 (656)
T ss_pred HHHHHHHH
Confidence 55555444
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.0023 Score=64.56 Aligned_cols=31 Identities=6% Similarity=-0.057 Sum_probs=20.1
Q ss_pred CCHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 048749 429 MSTDTYNVILKLYVNWDCEDKVRHTWEEMEK 459 (536)
Q Consensus 429 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 459 (536)
.|+...+.-.+.++...++++|..++-..++
T Consensus 1078 sDp~ll~RcadFF~~~~qyekAV~lL~~ar~ 1108 (1416)
T KOG3617|consen 1078 SDPKLLRRCADFFENNQQYEKAVNLLCLARE 1108 (1416)
T ss_pred CCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4566666666667777777777776655544
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.2e-05 Score=68.47 Aligned_cols=124 Identities=8% Similarity=0.154 Sum_probs=98.8
Q ss_pred cCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCC--HHHHH
Q 048749 169 ARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWL-CRYKH--VEVAE 243 (536)
Q Consensus 169 ~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~-~~~~~--~~~a~ 243 (536)
.++.+++...++... .+.+...|..+...|...|++++|+..|++..+.. +.+...+..+..++ ...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 566677777777655 67888899999999999999999999999888866 55677777777764 66676 58999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 048749 244 TFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVT 294 (536)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 294 (536)
+++++.....+.+..++..+...+.+.|++++|...|+.+.+.. +|+..-
T Consensus 131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r 180 (198)
T PRK10370 131 EMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVNR 180 (198)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccH
Confidence 99999766657788889999999999999999999999988765 445433
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.0015 Score=57.27 Aligned_cols=244 Identities=11% Similarity=0.070 Sum_probs=118.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHH
Q 048749 134 FDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEA-IGVFD 212 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~ 212 (536)
|++..++..-...... +.+...--.+-.+|...|++.....-...-. .+.......+.......++.+.- -++.+
T Consensus 22 Gnyq~~ine~~~~~~~---~~~~e~d~y~~raylAlg~~~~~~~eI~~~~-~~~lqAvr~~a~~~~~e~~~~~~~~~l~E 97 (299)
T KOG3081|consen 22 GNYQQCINEAEKFSSS---KTDVELDVYMYRAYLALGQYQIVISEIKEGK-ATPLQAVRLLAEYLELESNKKSILASLYE 97 (299)
T ss_pred hHHHHHHHHHHhhccc---cchhHHHHHHHHHHHHccccccccccccccc-CChHHHHHHHHHHhhCcchhHHHHHHHHH
Confidence 4555554444433222 1233444444555555555433322222111 12222233232333333333322 23344
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 048749 213 RRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDS 292 (536)
Q Consensus 213 ~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 292 (536)
.+.......+......-...|+..|++++|++..+... +..+...=+..+.+..+++-|.+.+++|.+-. +.
T Consensus 98 ~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~-----~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed 169 (299)
T KOG3081|consen 98 LVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE-----NLEAAALNVQILLKMHRFDLAEKELKKMQQID---ED 169 (299)
T ss_pred HHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hH
Confidence 44444333443333344455666777777776665511 33333333344456666677777777776432 34
Q ss_pred HHHHHHHHHHHh----cCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048749 293 VTYATFVNALTK----KGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSL 368 (536)
Q Consensus 293 ~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 368 (536)
.|.+-|..++.+ .+++.+|.-+|++|-++ ..|+..+.+....++...|++++|..+++........ +..+...+
T Consensus 170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nl 247 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANL 247 (299)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHH
Confidence 455545554443 34466667777776654 5566666666666666777777777777766655333 34444444
Q ss_pred HHHHHhcCCH-HHHHHHHHHHHhc
Q 048749 369 IKHLCKIKRM-ETVYEYLDEMEQK 391 (536)
Q Consensus 369 i~~~~~~~~~-~~A~~~~~~m~~~ 391 (536)
|.+-...|.. +-..+.+.+....
T Consensus 248 iv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 248 IVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHhCCChHHHHHHHHHHHhc
Confidence 4433333433 3333444444443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=7.4e-05 Score=77.31 Aligned_cols=180 Identities=8% Similarity=0.028 Sum_probs=137.1
Q ss_pred CCCCCHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHH
Q 048749 117 ELTLTDDLIVNVINRYRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGIL 194 (536)
Q Consensus 117 ~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l 194 (536)
....+...++..+....|.+++|+.+++.+.... +-+......++.++.+.+++++|+..+++.. .+.+......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~--Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF--PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 3334444555656666789999999999999863 5567888999999999999999999999988 66777888999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 048749 195 LNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVY 274 (536)
Q Consensus 195 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 274 (536)
..++.+.|++++|.++|++....+ +.+..++..+..++.+.|+.++|...|+.......+....|+.++. ++.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~------~~~ 233 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV------DLN 233 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH------HHH
Confidence 999999999999999999999843 4558899999999999999999999999975555666666665543 344
Q ss_pred HHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhc
Q 048749 275 EAKRFWKDIIKSK----CEPDSVTYATFVNALTKK 305 (536)
Q Consensus 275 ~A~~~~~~m~~~g----~~~~~~~~~~li~~~~~~ 305 (536)
.-..+++.+.-++ ....+.+...+|.-+.+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 234 ADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 4455566654433 233344555555555544
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.0008 Score=58.40 Aligned_cols=187 Identities=14% Similarity=0.140 Sum_probs=125.2
Q ss_pred CCHHHHHHHHHHHHH---cC-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048749 202 HMVEEAIGVFDRRKE---FG-ELDDLS-AFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEA 276 (536)
Q Consensus 202 g~~~~A~~~~~~m~~---~g-~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 276 (536)
.+.++.++++..+.. .| ..++.. .|-.++-+....|+.+.|..+++.+...++-+..+-..-.--+-..|++++|
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhH
Confidence 456777777776653 23 445544 4555666777788888888888887766654444333222234457888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048749 277 KRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNR 356 (536)
Q Consensus 277 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 356 (536)
+++++.+.+.+ +-|.+++--=+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++++.-.
T Consensus 106 ~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 106 IEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 88888888776 556667766666666677777787777777776 6668888888888888888888888888888654
Q ss_pred CCCCC-HHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcC
Q 048749 357 GCLPN-VTTYNSLIKHLCKIK---RMETVYEYLDEMEQKN 392 (536)
Q Consensus 357 g~~p~-~~~~~~li~~~~~~~---~~~~A~~~~~~m~~~~ 392 (536)
.|. ...+..+...+.-.| +++-|.++|.+..+..
T Consensus 184 --~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 184 --QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred --CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 343 333344444443333 4666777777776654
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.2e-06 Score=52.26 Aligned_cols=33 Identities=42% Similarity=0.847 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc
Q 048749 468 SYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPE 500 (536)
Q Consensus 468 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 500 (536)
+|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888887
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00013 Score=63.59 Aligned_cols=173 Identities=13% Similarity=0.059 Sum_probs=112.4
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048749 140 YTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGE 219 (536)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 219 (536)
-.+.+|+.... ...+......-...|...|++++|++..... .+......=+..+.+..+++-|.+.+++|.+.
T Consensus 93 ~~l~E~~a~~~-~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~---~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i-- 166 (299)
T KOG3081|consen 93 ASLYELVADST-DGSNLIDLLLAAIIYMHDGDFDEALKALHLG---ENLEAAALNVQILLKMHRFDLAEKELKKMQQI-- 166 (299)
T ss_pred HHHHHHHHhhc-cchhHHHHHHhhHHhhcCCChHHHHHHHhcc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--
Confidence 44566665544 3444455555566788888888888888873 34445555556677778888888888888863
Q ss_pred CCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 048749 220 LDDLSAFQNLLLWLCR----YKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTY 295 (536)
Q Consensus 220 ~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 295 (536)
.+..|.+.|..++.+ .+.+.+|.-+|+++..+.+|+..+.|-...++...|++++|..+++...... ..+..+.
T Consensus 167 -ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL 244 (299)
T KOG3081|consen 167 -DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETL 244 (299)
T ss_pred -chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHH
Confidence 455566666666544 3457777778888777777788777777777777888888888887777665 3345555
Q ss_pred HHHHHHHHhcCCHh-HHHHHHHHHHH
Q 048749 296 ATFVNALTKKGKLG-TALRLFQAMWE 320 (536)
Q Consensus 296 ~~li~~~~~~g~~~-~a~~~~~~m~~ 320 (536)
..+|-.-...|... -..+.+.+++.
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 55554444445443 33444455544
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.30 E-value=9.9e-05 Score=72.96 Aligned_cols=110 Identities=15% Similarity=0.126 Sum_probs=63.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChH
Q 048749 265 NGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIP 344 (536)
Q Consensus 265 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 344 (536)
.+......+.+|+.+++.+.+.+. -..-|..+..-|+..|+++.|.++|-+. ..++-.|.+|.+.|+|+
T Consensus 740 eaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHH
Confidence 344455666666666666655432 2234556667777777777777776432 23455667777777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048749 345 EALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDE 387 (536)
Q Consensus 345 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~ 387 (536)
.|.++-.+.. |.......|-+-..-.-+.|++.+|.++|-.
T Consensus 809 da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyit 849 (1636)
T KOG3616|consen 809 DAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYIT 849 (1636)
T ss_pred HHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEE
Confidence 7776655543 2233444555544555556666666655543
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00091 Score=66.46 Aligned_cols=52 Identities=17% Similarity=0.197 Sum_probs=26.5
Q ss_pred HHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048749 438 LKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEM 492 (536)
Q Consensus 438 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 492 (536)
|.+|-+.|..|..+++.++-... .-..|-..+..-|-..|+.+.|.+-|-+.
T Consensus 857 iqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 857 IQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred HHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 44555555555555544432211 01234445555666677777777665443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=5.7e-05 Score=62.16 Aligned_cols=90 Identities=9% Similarity=-0.024 Sum_probs=50.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 048749 159 FNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRY 236 (536)
Q Consensus 159 ~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 236 (536)
+..+...+.+.|++++|...|+... .+.+...|..+..++.+.|++++|+..|++..+.. +.+..++..+..++.+.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHc
Confidence 3344555555666666666665554 44455555556666666666666666666655543 34455555555555555
Q ss_pred CCHHHHHHHHHHh
Q 048749 237 KHVEVAETFFESE 249 (536)
Q Consensus 237 ~~~~~a~~~~~~~ 249 (536)
|+.++|...|+..
T Consensus 106 g~~~eAi~~~~~A 118 (144)
T PRK15359 106 GEPGLAREAFQTA 118 (144)
T ss_pred CCHHHHHHHHHHH
Confidence 5555555555553
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0022 Score=66.11 Aligned_cols=395 Identities=12% Similarity=0.016 Sum_probs=223.8
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CC--CCHHHHHHHHHHHHh
Q 048749 125 IVNVINRYRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DL--VNEKTYGILLNRYAA 200 (536)
Q Consensus 125 ~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~--~~~~~~~~li~~~~~ 200 (536)
.++-+.+.-.+...|.+.|+.+.+-+ ..+...+....+.|++...++.|..+.-... .+ .-...|....-.|..
T Consensus 497 ~LG~iYrd~~Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLe 574 (1238)
T KOG1127|consen 497 FLGQIYRDSDDMKRAKKCFDKAFELD--ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLE 574 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccC
Confidence 34433333237788899999887764 5578889999999999999999998844333 11 122334445556778
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048749 201 AHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFW 280 (536)
Q Consensus 201 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 280 (536)
.++...|+.-|+...+.. +.|...|..+..+|.++|++..|.++|.+...--|.+...-.-....-+..|.+.+|...+
T Consensus 575 a~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l 653 (1238)
T KOG1127|consen 575 AHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDAL 653 (1238)
T ss_pred ccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 899999999999988766 6678899999999999999999999998854332444444444445566789999999988
Q ss_pred HHHHHC------CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH-------HcCCCCCHhhHHHHHHHHHhcCChH---
Q 048749 281 KDIIKS------KCEPDSVTYATFVNALTKKGKLGTALRLFQAMW-------EKGRKPDVVTCNCIIDALCFKKRIP--- 344 (536)
Q Consensus 281 ~~m~~~------g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-------~~g~~p~~~~~~~li~~~~~~g~~~--- 344 (536)
...+.. +..--..++..+...+.-.|-...+..+++.-+ ......+...|-.+-++|.-.-..+
T Consensus 654 ~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~ 733 (1238)
T KOG1127|consen 654 GLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSI 733 (1238)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccc
Confidence 777642 111112333333333443443333333333322 2211122222222222211000000
Q ss_pred ---HHHHHHH-HHHHCCCC--------------------CCHHHHHHHHHHHHh----c----CCHHHHHHHHHHHHhcC
Q 048749 345 ---EALEVLR-EMKNRGCL--------------------PNVTTYNSLIKHLCK----I----KRMETVYEYLDEMEQKN 392 (536)
Q Consensus 345 ---~A~~~~~-~m~~~g~~--------------------p~~~~~~~li~~~~~----~----~~~~~A~~~~~~m~~~~ 392 (536)
....+|. +....+.- .+..+|..|+..|.+ . .+...|...+++.++.
T Consensus 734 vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L- 812 (1238)
T KOG1127|consen 734 VNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSL- 812 (1238)
T ss_pred hHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH-
Confidence 0011111 11111111 123344444443333 1 1334677777777664
Q ss_pred CCCCCcHHHHHHHHHh--cCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHH
Q 048749 393 GSCLPNEITFNYLLKS--LKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYT 470 (536)
Q Consensus 393 ~~~~p~~~~~~~ll~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 470 (536)
...+..+|+.|=-. -+...-+.-.|-.-... .+....+|..+.-.+.+..+++-|...|....... +-|...|-
T Consensus 813 --~ann~~~WnaLGVlsg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~Wl 888 (1238)
T KOG1127|consen 813 --CANNEGLWNALGVLSGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWL 888 (1238)
T ss_pred --hhccHHHHHHHHHhhccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHH
Confidence 23455556544222 12222222222222221 24466778888888889999999999999887752 22455565
Q ss_pred HHHHHHHhcCCHHHHHHHHHH--HH--HCCCCCcHHHHHHHHHHHHhhhhhhhhhHHHHHh
Q 048749 471 VMIHGLYDKGRLEDALSYFHE--MR--LKGMVPEPRTGILVNDMNIKLKERGEQGKKVIKL 527 (536)
Q Consensus 471 ~li~~~~~~g~~~~A~~~~~~--m~--~~g~~p~~~t~~~l~~~~~~~~~~~~a~~~~~~~ 527 (536)
.........|+.-++..+|.. .. ..|-.|+..-+..........|+.++-.....++
T Consensus 889 G~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki 949 (1238)
T KOG1127|consen 889 GEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKI 949 (1238)
T ss_pred HHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhh
Confidence 544445566877778877765 22 2244555555556666666666655544444443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.001 Score=69.88 Aligned_cols=256 Identities=7% Similarity=-0.002 Sum_probs=161.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048749 222 DLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNA 301 (536)
Q Consensus 222 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 301 (536)
+...+..|+..+...+++++|.++.+......+-....|..+...+.+.++.+++..+ .++..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-----------------NLIDS 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-----------------hhhhh
Confidence 3556777777777788888888777764443343444444444455555554444333 23333
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048749 302 LTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETV 381 (536)
Q Consensus 302 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A 381 (536)
.....++..+..++..|...+ -+...+-.+..+|-+.|+.++|..+++++.+... -|+.+.|.+...|... ++++|
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADR-DNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred cccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHh-hHHHH
Confidence 334444544444555555532 2445778889999999999999999999998873 3788999999999999 99999
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHC-
Q 048749 382 YEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKK- 460 (536)
Q Consensus 382 ~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 460 (536)
.+++.+..... -...+...+.++|..+...... +++.-..+.+.+...
T Consensus 169 ~~m~~KAV~~~--------------i~~kq~~~~~e~W~k~~~~~~~-----------------d~d~f~~i~~ki~~~~ 217 (906)
T PRK14720 169 ITYLKKAIYRF--------------IKKKQYVGIEEIWSKLVHYNSD-----------------DFDFFLRIERKVLGHR 217 (906)
T ss_pred HHHHHHHHHHH--------------HhhhcchHHHHHHHHHHhcCcc-----------------cchHHHHHHHHHHhhh
Confidence 99999887642 1112445667777777765321 233333344444432
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhhhhhhhhhHHHHHhhhc
Q 048749 461 GMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRTGILVNDMNIKLKERGEQGKKVIKLTSL 530 (536)
Q Consensus 461 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~~~~a~~~~~~~~~~ 530 (536)
|..--..++-.+-..|-..++++++..+++..++..-. |.....-++..+...-....-.+.+.++..+
T Consensus 218 ~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~~kY~~~~~~ee~l~~s~l 286 (906)
T PRK14720 218 EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYKEKYKDHSLLEDYLKMSDI 286 (906)
T ss_pred ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHHHHccCcchHHHHHHHhcc
Confidence 33445566777777888899999999999999985222 3444555555555333333444444555443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.9e-06 Score=50.19 Aligned_cols=33 Identities=27% Similarity=0.580 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 048749 467 RSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVP 499 (536)
Q Consensus 467 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 499 (536)
.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777766
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=7.5e-05 Score=61.48 Aligned_cols=93 Identities=12% Similarity=-0.138 Sum_probs=45.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 048749 193 ILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGN 272 (536)
Q Consensus 193 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 272 (536)
.....+...|++++|...|+...... +.+...+..+..++.+.|++++|...|+......+.+...+..+..++.+.|+
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC
Confidence 34444445555555555555554433 33444444555555555555555555555333334444455555555555555
Q ss_pred HHHHHHHHHHHHHC
Q 048749 273 VYEAKRFWKDIIKS 286 (536)
Q Consensus 273 ~~~A~~~~~~m~~~ 286 (536)
.++|...|+...+.
T Consensus 108 ~~eAi~~~~~Al~~ 121 (144)
T PRK15359 108 PGLAREAFQTAIKM 121 (144)
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555554443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.18 E-value=9.5e-05 Score=60.38 Aligned_cols=91 Identities=16% Similarity=0.063 Sum_probs=38.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048749 229 LLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKL 308 (536)
Q Consensus 229 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 308 (536)
+...+...|++++|...++......+.+...|..+...+.+.|++++|..+++...+.+ +.+...+..+...+...|++
T Consensus 23 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~ 101 (135)
T TIGR02552 23 LAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGEP 101 (135)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCCH
Confidence 33344444444444444444322223344444444444444444444444444443332 22333333344444444444
Q ss_pred hHHHHHHHHHHH
Q 048749 309 GTALRLFQAMWE 320 (536)
Q Consensus 309 ~~a~~~~~~m~~ 320 (536)
++|.+.|+...+
T Consensus 102 ~~A~~~~~~al~ 113 (135)
T TIGR02552 102 ESALKALDLAIE 113 (135)
T ss_pred HHHHHHHHHHHH
Confidence 444444444444
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0063 Score=60.39 Aligned_cols=338 Identities=11% Similarity=0.061 Sum_probs=185.2
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHhCCCCCCHH------------HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048749 153 SPGSNVFNAILDVLGRARRFVELIQVFDEMPDLVNEK------------TYGILLNRYAAAHMVEEAIGVFDRRKEFGEL 220 (536)
Q Consensus 153 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~------------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 220 (536)
.|.+..|..+...-.+.-.++.|+..|-+..+-+... .-.+=+.+ --|.+++|.++|-+|.+.+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhh--
Confidence 4778899999988888888888888887776222221 11122222 2488999999998888765
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048749 221 DDLSAFQNLLLWLCRYKHVEVAETFFESEKNEF--GYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATF 298 (536)
Q Consensus 221 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 298 (536)
..+..+.+.|++-.+.++++.-..+. ..-..+|+.+.+.++....+++|.+.+..-.. -...
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~ 828 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQ 828 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhH
Confidence 45667778888877777766532221 22345788888888888888888887755321 1124
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048749 299 VNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRM 378 (536)
Q Consensus 299 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 378 (536)
+.++.+..++++-+.+...+ +-+....-.+.+++.+.|.-++|.+.|-+.-. |. +-+..|...++|
T Consensus 829 ~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----pk-----aAv~tCv~LnQW 894 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----PK-----AAVHTCVELNQW 894 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC----cH-----HHHHHHHHHHHH
Confidence 55555555555544443332 22444555566666666666666655533211 11 223455556666
Q ss_pred HHHHHHHHHHHhcCCCCCCcHHHHHHH-----H------Hh------cCCCChHHHHHHHHHH----CCCCCCH----HH
Q 048749 379 ETVYEYLDEMEQKNGSCLPNEITFNYL-----L------KS------LKKPEEVPWVLERMER----NGCKMST----DT 433 (536)
Q Consensus 379 ~~A~~~~~~m~~~~~~~~p~~~~~~~l-----l------~~------~~~~~~a~~~~~~~~~----~~~~~~~----~~ 433 (536)
.+|.++-+... .|...|.-+- | .+ -++.=+|-+++.+|.+ .+.++-. .+
T Consensus 895 ~~avelaq~~~------l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYV 968 (1189)
T KOG2041|consen 895 GEAVELAQRFQ------LPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYV 968 (1189)
T ss_pred HHHHHHHHhcc------chhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHH
Confidence 66665554331 1222221110 0 00 0222234444444433 2222211 11
Q ss_pred HHH-HHHHH----------HccCChhHHHHHHHHHHHC-------CCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHH
Q 048749 434 YNV-ILKLY----------VNWDCEDKVRHTWEEMEKK-------GMGPDQRSYT--VMIHGLYDKGRLEDALSYFHEMR 493 (536)
Q Consensus 434 ~~~-li~~~----------~~~g~~~~A~~~~~~m~~~-------g~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m~ 493 (536)
..+ |+.-+ -+.|..++|..+++...-. +.--....|. .|..--...|.++.|+..--.+.
T Consensus 969 L~AlLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~ 1048 (1189)
T KOG2041|consen 969 LGALLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILS 1048 (1189)
T ss_pred HHHHHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhc
Confidence 111 11111 1245556666554433211 0001223344 34444567788888887654444
Q ss_pred HC-CCCCcHHHHHHHHHHHHhhhhhhhhhHHHHHhhhc
Q 048749 494 LK-GMVPEPRTGILVNDMNIKLKERGEQGKKVIKLTSL 530 (536)
Q Consensus 494 ~~-g~~p~~~t~~~l~~~~~~~~~~~~a~~~~~~~~~~ 530 (536)
+- .+-|....|.++.-+.+....++.-.+.+.++.+.
T Consensus 1049 DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~~ 1086 (1189)
T KOG2041|consen 1049 DYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEAF 1086 (1189)
T ss_pred cHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhh
Confidence 32 46677778888888877777777666666666543
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.4e-06 Score=49.75 Aligned_cols=34 Identities=35% Similarity=0.449 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 048749 190 TYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDL 223 (536)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 223 (536)
+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 7999999999999999999999999999999973
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0013 Score=57.16 Aligned_cols=186 Identities=11% Similarity=0.009 Sum_probs=135.1
Q ss_pred CCHHHHHHHHHHHHhCC--C-CCCCHHH-HHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHH
Q 048749 134 FDWEAAYTFFKWVSREG--D-YSPGSNV-FNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEA 207 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~~--~-~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A 207 (536)
.++++.++++..+.... + ..++..+ |..++-+....|+.+.|..+++.+. .+.+..+-..-.-.+-..|++++|
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhH
Confidence 47788888887775432 1 4455444 6666677778999999999998876 323333322223335567899999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048749 208 IGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSK 287 (536)
Q Consensus 208 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 287 (536)
+++|+.+.+.+ +.|..++..=+...-..|.--+|.+-+....+.+..|...|.-+.+.|...|++++|.-.++++.-..
T Consensus 106 ~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~ 184 (289)
T KOG3060|consen 106 IEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ 184 (289)
T ss_pred HHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC
Confidence 99999999877 67777887777777778887788888888777788899999999999999999999999999998764
Q ss_pred CCCCHHHHHHHHHHHHhcC---CHhHHHHHHHHHHHc
Q 048749 288 CEPDSVTYATFVNALTKKG---KLGTALRLFQAMWEK 321 (536)
Q Consensus 288 ~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~ 321 (536)
|-+...+..+...+...| +...+.++|.+..+.
T Consensus 185 -P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 185 -PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred -CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 344555556666555544 355677777777764
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00018 Score=58.70 Aligned_cols=97 Identities=13% Similarity=-0.019 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 048749 189 KTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWC 268 (536)
Q Consensus 189 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 268 (536)
.....+...+...|++++|.+.|+.....+ +.+...+..+...+.+.|+++.|..+++......+.+...+..+...|.
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 334444555555566666666665555543 3345555555555666666666666666543333445555656666666
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 048749 269 VLGNVYEAKRFWKDIIKS 286 (536)
Q Consensus 269 ~~g~~~~A~~~~~~m~~~ 286 (536)
..|++++|...|+...+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 666666666666666554
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.06 E-value=7e-06 Score=48.49 Aligned_cols=33 Identities=36% Similarity=0.416 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 048749 189 KTYGILLNRYAAAHMVEEAIGVFDRRKEFGELD 221 (536)
Q Consensus 189 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 221 (536)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999887
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.011 Score=53.89 Aligned_cols=189 Identities=12% Similarity=-0.039 Sum_probs=120.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC-CCCCHH-HHHHHHHHHHhcCCHHHHHHHH
Q 048749 134 FDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP-DLVNEK-TYGILLNRYAAAHMVEEAIGVF 211 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~-~~~~li~~~~~~g~~~~A~~~~ 211 (536)
+.+..|+.-|..+++-+ +.+-.++..-...|...|+-..|+.=|++.. ..||-. ..-.-...+.+.|.+++|..=|
T Consensus 52 ~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF 129 (504)
T KOG0624|consen 52 GQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADF 129 (504)
T ss_pred hhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHH
Confidence 56777777777766532 3334445555667777787777777777665 334421 1222234567788888888888
Q ss_pred HHHHHcCCCC--CHHHH------------HHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048749 212 DRRKEFGELD--DLSAF------------QNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAK 277 (536)
Q Consensus 212 ~~m~~~g~~~--~~~~~------------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 277 (536)
+..++..... ....+ ...+..+...|+...|......+.+-.+.|...+..-..+|...|++..|+
T Consensus 130 ~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI 209 (504)
T KOG0624|consen 130 DQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAI 209 (504)
T ss_pred HHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHH
Confidence 8877654211 11111 122334456677777877777766666777778888888888888888887
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCH
Q 048749 278 RFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDV 327 (536)
Q Consensus 278 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 327 (536)
.-++...+.. .-+..++..+-..+...|+.+.++...++..+ +.||-
T Consensus 210 ~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdH 256 (504)
T KOG0624|consen 210 HDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDH 256 (504)
T ss_pred HHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcch
Confidence 7777665544 33455566666777778888887777777666 34554
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00032 Score=67.18 Aligned_cols=129 Identities=15% Similarity=0.135 Sum_probs=99.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 048749 256 DIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIID 335 (536)
Q Consensus 256 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 335 (536)
+......|+..+...++++.|..+|+++.+.. |+ ....++..+...++-.+|.+++.+..+. .+.+......-..
T Consensus 168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~ 242 (395)
T PF09295_consen 168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAE 242 (395)
T ss_pred chHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHH
Confidence 33445556666667888999999999988764 44 3445777777788888899998888865 3336666777777
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048749 336 ALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQ 390 (536)
Q Consensus 336 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 390 (536)
.+.+.++++.|+.+.+++.+.... +..+|..|..+|.+.|+++.|+..++.+..
T Consensus 243 fLl~k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 243 FLLSKKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHhcCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 888999999999999999876322 566899999999999999999999988754
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00032 Score=67.19 Aligned_cols=117 Identities=15% Similarity=0.114 Sum_probs=60.6
Q ss_pred HHHHccCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048749 164 DVLGRARRFVELIQVFDEMP-DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVA 242 (536)
Q Consensus 164 ~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a 242 (536)
..+...++++.|+.+|+++. ..|+ ....+++.+...++..+|++++++..+.. +.+...+..-...|.+.++.+.|
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~lA 253 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERDPE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYELA 253 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcCCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHH
Confidence 33344556666666666655 2222 33345555555555556666655555432 33444444444455555555555
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048749 243 ETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDI 283 (536)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 283 (536)
..+.++...-.|.+..+|..|..+|.+.|+++.|+..++.+
T Consensus 254 L~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 254 LEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 55555544433444455555555555555555555555444
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.95 E-value=9.3e-06 Score=46.75 Aligned_cols=30 Identities=40% Similarity=0.794 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 048749 468 SYTVMIHGLYDKGRLEDALSYFHEMRLKGM 497 (536)
Q Consensus 468 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 497 (536)
+|+.+|++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 577777777777777777777777776653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00087 Score=55.36 Aligned_cols=22 Identities=14% Similarity=0.170 Sum_probs=9.7
Q ss_pred HHHHhcCCHhHHHHHHHHHHHc
Q 048749 300 NALTKKGKLGTALRLFQAMWEK 321 (536)
Q Consensus 300 ~~~~~~g~~~~a~~~~~~m~~~ 321 (536)
..+...|++++|...|+.....
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~ 77 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALAN 77 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhh
Confidence 3344444444444444444443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00025 Score=53.33 Aligned_cols=79 Identities=20% Similarity=0.323 Sum_probs=55.0
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCC-CCCHhhHHHHHHHHHhcC--------ChHHHHHHHHHHHHCCCCCCHHHHH
Q 048749 296 ATFVNALTKKGKLGTALRLFQAMWEKGR-KPDVVTCNCIIDALCFKK--------RIPEALEVLREMKNRGCLPNVTTYN 366 (536)
Q Consensus 296 ~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~~~~ 366 (536)
...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|+.|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3445556666777777777777777777 777777777777766543 2345667777777777778888888
Q ss_pred HHHHHHHh
Q 048749 367 SLIKHLCK 374 (536)
Q Consensus 367 ~li~~~~~ 374 (536)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 77776654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0013 Score=54.41 Aligned_cols=128 Identities=14% Similarity=0.125 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHH
Q 048749 223 LSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYD---IKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDS--VTYAT 297 (536)
Q Consensus 223 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~ 297 (536)
...|..++..+ ..++...+...++.+....+.+ ....-.+...+...|++++|...|+........++. .....
T Consensus 12 ~~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 12 SALYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 34566677766 4888999988888876655555 334455667888999999999999999987633322 34455
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHH
Q 048749 298 FVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREM 353 (536)
Q Consensus 298 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 353 (536)
+...+...|++++|+..++...... .....+....+.|.+.|+.++|...|+..
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 6788889999999999997744332 34456677888899999999999998764
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00022 Score=68.57 Aligned_cols=125 Identities=18% Similarity=0.097 Sum_probs=90.0
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHh
Q 048749 251 NEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKS--KCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVV 328 (536)
Q Consensus 251 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 328 (536)
.+.+.+......+++.+....+++.+..++-..... ....-..|..++|+.|.+.|..+.++.+++.=...|+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 344556666777777777777777788877777654 222223455678888888888888888888777778888888
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048749 329 TCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKI 375 (536)
Q Consensus 329 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 375 (536)
+++.||+.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888888888877666666666666666666554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00031 Score=67.57 Aligned_cols=124 Identities=11% Similarity=0.028 Sum_probs=104.8
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 048749 217 FGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKN---EFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSV 293 (536)
Q Consensus 217 ~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 293 (536)
.+.+.+......+++.+....+++.++.++.+.+. ....-..+..++|+.|.+.|..+.++.+++.=...|+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 34567788888899999888899999998887533 222233455699999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 048749 294 TYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFK 340 (536)
Q Consensus 294 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 340 (536)
+++.||+.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999998887777888888778777776
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0004 Score=52.26 Aligned_cols=81 Identities=11% Similarity=0.202 Sum_probs=68.1
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCcHHHH
Q 048749 434 YNVILKLYVNWDCEDKVRHTWEEMEKKGM-GPDQRSYTVMIHGLYDKG--------RLEDALSYFHEMRLKGMVPEPRTG 504 (536)
Q Consensus 434 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~t~ 504 (536)
-...|.-+...+++.....+|+.+++.|+ -|+..+|+.++.+.++.. +.-+.+.+++.|+..+++|+..||
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456666677999999999999999999 899999999999877542 344578899999999999999999
Q ss_pred HHHHHHHHhh
Q 048749 505 ILVNDMNIKL 514 (536)
Q Consensus 505 ~~l~~~~~~~ 514 (536)
.+++..+.+.
T Consensus 108 nivl~~Llkg 117 (120)
T PF08579_consen 108 NIVLGSLLKG 117 (120)
T ss_pred HHHHHHHHHh
Confidence 9999887764
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.77 E-value=3.6e-05 Score=44.22 Aligned_cols=30 Identities=40% Similarity=0.588 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048749 190 TYGILLNRYAAAHMVEEAIGVFDRRKEFGE 219 (536)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 219 (536)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 788888888888888888888888888774
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00082 Score=50.35 Aligned_cols=92 Identities=20% Similarity=0.134 Sum_probs=40.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 048749 192 GILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLG 271 (536)
Q Consensus 192 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g 271 (536)
..+...+...|++++|++.+++..+.. +.+...+..+...+...++++.|...++......+.+..++..+...+...|
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 334444444555555555555544432 2222334444444444444444444444432222233334444444444444
Q ss_pred CHHHHHHHHHHHH
Q 048749 272 NVYEAKRFWKDII 284 (536)
Q Consensus 272 ~~~~A~~~~~~m~ 284 (536)
+++.|...+....
T Consensus 83 ~~~~a~~~~~~~~ 95 (100)
T cd00189 83 KYEEALEAYEKAL 95 (100)
T ss_pred hHHHHHHHHHHHH
Confidence 4444444444443
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00061 Score=58.10 Aligned_cols=75 Identities=19% Similarity=0.301 Sum_probs=38.1
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------------CCHHHHHHHHHHHHhcCCCCCCcHHHHHH
Q 048749 341 KRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKI----------------KRMETVYEYLDEMEQKNGSCLPNEITFNY 404 (536)
Q Consensus 341 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~----------------~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ 404 (536)
|..+=....+..|.+.|+.-|..+|+.|++.+=+. .+.+-|++++++|...| +.||..|+..
T Consensus 66 GHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~g--V~Pd~Et~~~ 143 (228)
T PF06239_consen 66 GHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNG--VMPDKETEQM 143 (228)
T ss_pred ChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcC--CCCcHHHHHH
Confidence 34444444444444555555555555544443221 13344556666666665 5666666666
Q ss_pred HHHhcCCCChHHH
Q 048749 405 LLKSLKKPEEVPW 417 (536)
Q Consensus 405 ll~~~~~~~~a~~ 417 (536)
++..+|+...+.+
T Consensus 144 ll~iFG~~s~p~~ 156 (228)
T PF06239_consen 144 LLNIFGRKSHPMK 156 (228)
T ss_pred HHHHhccccHHHH
Confidence 6666665554443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00086 Score=62.13 Aligned_cols=129 Identities=17% Similarity=0.163 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 048749 190 TYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLW-LCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWC 268 (536)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 268 (536)
+|..+++..-+.+..+.|.++|.+.++.+ ..+...|...... +...++.+.|..+|+...+.++.+...|...++.+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 45555565555555666666666665432 2222333333333 222344455666666644445555566666666666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 048749 269 VLGNVYEAKRFWKDIIKSKCEPD---SVTYATFVNALTKKGKLGTALRLFQAMWE 320 (536)
Q Consensus 269 ~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 320 (536)
+.|+.+.|..+|+..... +.++ ...|...+..=.+.|+++.+.++.+++.+
T Consensus 82 ~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 82 KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666665543 1111 13556666555566666666666665555
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0016 Score=55.54 Aligned_cols=105 Identities=18% Similarity=0.220 Sum_probs=71.9
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHH
Q 048749 185 LVNEKTYGILLNRYAA-----AHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKT 259 (536)
Q Consensus 185 ~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 259 (536)
..+..+|..++..|.+ .|.++=....+..|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+.+=..
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~h------- 114 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFMH------- 114 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhcc-------
Confidence 3455555555555553 36677777888999999999999999999988754 2221 11122221101
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048749 260 MNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGK 307 (536)
Q Consensus 260 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 307 (536)
.-.+-+-|++++++|...|+-||..++..+++.+++.+.
T Consensus 115 ---------yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 ---------YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ---------CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 123456788899999999999999999999998877665
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0018 Score=59.95 Aligned_cols=145 Identities=13% Similarity=0.075 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 048749 258 KTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNA-LTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDA 336 (536)
Q Consensus 258 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 336 (536)
.+|..++...-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|.++|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 457777777777777888888888777543 2233334333333 23356666688888887776 55566777777788
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhc
Q 048749 337 LCFKKRIPEALEVLREMKNRGCLP---NVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSL 409 (536)
Q Consensus 337 ~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~ 409 (536)
+.+.++.+.|..+|++.... +.+ ....|...+.-=.+.|+++.+.++.+.+.+.- |+...+..+++.|
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~----~~~~~~~~f~~ry 150 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF----PEDNSLELFSDRY 150 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT----TTS-HHHHHHCCT
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh----hhhhHHHHHHHHh
Confidence 88888888888888877654 222 22478888877777888888888888887743 4444444455443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.11 Score=53.59 Aligned_cols=218 Identities=15% Similarity=0.153 Sum_probs=106.2
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH--HHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048749 134 FDWEAAYTFFKWVSREGDYSPGSNVFNAILDV--LGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIG 209 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~ 209 (536)
+++..|++-...+.++. +.. .|..++.+ +.|.|+.++|..+++... ...|..|...+-.+|...|+.++|..
T Consensus 23 ~qfkkal~~~~kllkk~--Pn~--~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKH--PNA--LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HHHHHHHHHHHHHHHHC--CCc--HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 35666666666666553 111 12222222 345666666666666655 33466666666666667777777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc-C---------CHHHHHHH
Q 048749 210 VFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVL-G---------NVYEAKRF 279 (536)
Q Consensus 210 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~-g---------~~~~A~~~ 279 (536)
+|++.... -|+..-...+..+|.+.+.+..-.+.=-++-+.++-+...+=++++.+... . -..-|.+.
T Consensus 99 ~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 99 LYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence 77666643 355555556666666666554422222222122222333322233322211 0 01234445
Q ss_pred HHHHHHCC-CCCCHHHHHHHHHHHHhcCCHhHHHHHHH-HHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048749 280 WKDIIKSK-CEPDSVTYATFVNALTKKGKLGTALRLFQ-AMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRG 357 (536)
Q Consensus 280 ~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~-~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 357 (536)
++.+.+.+ ..-+..-...-...+...|++++|++++. ..-+.-..-+...-+.-++.+...+++++..++-.++...|
T Consensus 177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 55555443 11111112222233445566777776663 22222222233334455566666666666666666666554
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0011 Score=49.72 Aligned_cols=94 Identities=19% Similarity=0.182 Sum_probs=51.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh
Q 048749 260 MNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCF 339 (536)
Q Consensus 260 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 339 (536)
+..+...+...|++++|..++++..+.. +.+...+..+...+...+++++|.+.++...+.. +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 3344455555666666666666655443 2233455555556666666666666666655542 2233455555566666
Q ss_pred cCChHHHHHHHHHHHH
Q 048749 340 KKRIPEALEVLREMKN 355 (536)
Q Consensus 340 ~g~~~~A~~~~~~m~~ 355 (536)
.|++++|...+....+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 6666666666665543
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.029 Score=52.18 Aligned_cols=92 Identities=14% Similarity=0.108 Sum_probs=46.2
Q ss_pred HHHhc-CCHhHHHHHHHHHHHc----CCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-----CCHH-HHHHH
Q 048749 301 ALTKK-GKLGTALRLFQAMWEK----GRKP-DVVTCNCIIDALCFKKRIPEALEVLREMKNRGCL-----PNVT-TYNSL 368 (536)
Q Consensus 301 ~~~~~-g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----p~~~-~~~~l 368 (536)
.|... |++++|++.|++..+. |..- -..++..+...+.+.|++++|.++|++....-.. .++. .|-..
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a 202 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA 202 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 44444 6666666666665543 1000 0223455666677777777777777776543221 1121 22223
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcC
Q 048749 369 IKHLCKIKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 369 i~~~~~~~~~~~A~~~~~~m~~~~ 392 (536)
+-++...|+...|.+.|++.....
T Consensus 203 ~l~~L~~~D~v~A~~~~~~~~~~~ 226 (282)
T PF14938_consen 203 ILCHLAMGDYVAARKALERYCSQD 226 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHGTTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC
Confidence 334555677777777777766543
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.011 Score=54.90 Aligned_cols=145 Identities=8% Similarity=0.061 Sum_probs=86.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHH
Q 048749 229 LLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVL-GNVYEAKRFWKDIIK----SKCEPD--SVTYATFVNA 301 (536)
Q Consensus 229 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~----~g~~~~--~~~~~~li~~ 301 (536)
.+..|...|++..|-.++.. +...|-.. |++++|.+.|++..+ .| .+. ...+..+...
T Consensus 100 A~~~y~~~G~~~~aA~~~~~--------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKE--------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHH--------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHH--------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHH
Confidence 34456777777776665544 34455565 788888888887654 23 111 2455677788
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCC-----CHh-hHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCC--HHHHHHHHHH
Q 048749 302 LTKKGKLGTALRLFQAMWEKGRKP-----DVV-TCNCIIDALCFKKRIPEALEVLREMKNRG--CLPN--VTTYNSLIKH 371 (536)
Q Consensus 302 ~~~~g~~~~a~~~~~~m~~~g~~p-----~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~--~~~~~~li~~ 371 (536)
+.+.|++++|.++|+++...-... +.. .|...+-++...|++..|.+.|++..... ...+ ......||.+
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A 244 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEA 244 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHH
Confidence 899999999999999987753321 121 22333446667899999999999887542 2222 3455666766
Q ss_pred HHhc--CCHHHHHHHHHHH
Q 048749 372 LCKI--KRMETVYEYLDEM 388 (536)
Q Consensus 372 ~~~~--~~~~~A~~~~~~m 388 (536)
|-.. ..++.++.-|+.+
T Consensus 245 ~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 245 YEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHTT-CCCHHHHCHHHTTS
T ss_pred HHhCCHHHHHHHHHHHccc
Confidence 6542 2455565555554
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0035 Score=49.58 Aligned_cols=96 Identities=16% Similarity=-0.052 Sum_probs=40.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCC---CCHHHHHHHHH
Q 048749 191 YGILLNRYAAAHMVEEAIGVFDRRKEFGE--LDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFG---YDIKTMNIILN 265 (536)
Q Consensus 191 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~li~ 265 (536)
+-.+...+.+.|++++|.+.|..+.+..- ......+..+..++.+.|+++.|...|+.+....+ ....++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 33444445555555555555555544320 00122333344444444555555544444321111 11233444444
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 048749 266 GWCVLGNVYEAKRFWKDIIKS 286 (536)
Q Consensus 266 ~~~~~g~~~~A~~~~~~m~~~ 286 (536)
++.+.|+.++|...++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 444445555555554444443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0039 Score=49.31 Aligned_cols=97 Identities=15% Similarity=-0.021 Sum_probs=53.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC--CCHhhHHHHHH
Q 048749 260 MNIILNGWCVLGNVYEAKRFWKDIIKSKC--EPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRK--PDVVTCNCIID 335 (536)
Q Consensus 260 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p~~~~~~~li~ 335 (536)
+..+...+.+.|++++|...|+.+..... ......+..+..++.+.|++++|.+.|+.+....-. .....+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 44455555566666666666666654321 111234445566666666666666666666553211 11334555555
Q ss_pred HHHhcCChHHHHHHHHHHHHC
Q 048749 336 ALCFKKRIPEALEVLREMKNR 356 (536)
Q Consensus 336 ~~~~~g~~~~A~~~~~~m~~~ 356 (536)
++.+.|+.++|...++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 666666666666666666554
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0067 Score=51.75 Aligned_cols=82 Identities=12% Similarity=0.008 Sum_probs=33.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 048749 191 YGILLNRYAAAHMVEEAIGVFDRRKEFGELDD--LSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWC 268 (536)
Q Consensus 191 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 268 (536)
+..+...+...|++++|+..|++..+....+. ...+..+...+.+.|+++.|...+++.....+.+...+..+...|.
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 117 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYH 117 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 34444444444444444444444443221111 2334444444444444444444444432222223333444444444
Q ss_pred hcCC
Q 048749 269 VLGN 272 (536)
Q Consensus 269 ~~g~ 272 (536)
..|+
T Consensus 118 ~~g~ 121 (172)
T PRK02603 118 KRGE 121 (172)
T ss_pred HcCC
Confidence 4444
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.04 Score=49.76 Aligned_cols=58 Identities=10% Similarity=0.039 Sum_probs=39.2
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048749 436 VILKLYVNWDCEDKVRHTWEEMEKK--GMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMR 493 (536)
Q Consensus 436 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 493 (536)
.+.+.|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|..+...+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 4566677778887888877777764 222334556667777777888877777665543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.18 Score=50.61 Aligned_cols=306 Identities=14% Similarity=0.119 Sum_probs=170.8
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048749 134 FDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP----DLVNEKTYGILLNRYAAAHMVEEAIG 209 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~ 209 (536)
|++++|.+++-.+.+++ .-|..+.+.|+|-...+++..-. +..-...|+.+...++....|++|.+
T Consensus 748 g~feeaek~yld~drrD----------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRD----------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred cchhHhhhhhhccchhh----------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777777776665543 35677778888888888887654 22334678888888888888888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 048749 210 VFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCE 289 (536)
Q Consensus 210 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 289 (536)
.|..-... ...+.++.+..++++-+.+-..+ +.+....-.+.+++.+.|.-++|.+.|-... .
T Consensus 818 yY~~~~~~---------e~~~ecly~le~f~~LE~la~~L----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~ 880 (1189)
T KOG2041|consen 818 YYSYCGDT---------ENQIECLYRLELFGELEVLARTL----PEDSELLPVMADMFTSVGMCDQAVEAYLRRS----L 880 (1189)
T ss_pred HHHhccch---------HhHHHHHHHHHhhhhHHHHHHhc----CcccchHHHHHHHHHhhchHHHHHHHHHhcc----C
Confidence 88653321 14566666666666655554443 4466667778888888888888887764332 2
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhH--------------HHHHHHHHhcCChHHHHHHHHHHHH
Q 048749 290 PDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTC--------------NCIIDALCFKKRIPEALEVLREMKN 355 (536)
Q Consensus 290 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~--------------~~li~~~~~~g~~~~A~~~~~~m~~ 355 (536)
|. ..+..|...+++.+|.++-+...- |.+.+. .--|..+.+.|..-.|-+++.+|.+
T Consensus 881 pk-----aAv~tCv~LnQW~~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 881 PK-----AAVHTCVELNQWGEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred cH-----HHHHHHHHHHHHHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 22 235667777788877776654322 122111 1124455666666666666666643
Q ss_pred C----CCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHH--------HH
Q 048749 356 R----GCLPNVTTYNS-LIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLE--------RM 422 (536)
Q Consensus 356 ~----g~~p~~~~~~~-li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~--------~~ 422 (536)
+ +.++ ...-.. ++.++ -..+..++.+-.+.....| +.++|..+++ .+
T Consensus 952 ~e~~K~~p~-lr~KklYVL~Al-LvE~h~~~ik~~~~~~~~g------------------~~~dat~lles~~l~~~~ri 1011 (1189)
T KOG2041|consen 952 REQEKYVPY-LRLKKLYVLGAL-LVENHRQTIKELRKIDKHG------------------FLEDATDLLESGLLAEQSRI 1011 (1189)
T ss_pred HHhhccCCH-HHHHHHHHHHHH-HHHHHHHHHHHhhhhhhcC------------------cchhhhhhhhhhhhhhHHHH
Confidence 2 2221 111111 11111 1122333333333333333 2222222111 11
Q ss_pred HHCCC-CCCHHHHHHHHHHHHccCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048749 423 ERNGC-KMSTDTYNVILKLYVNWDCEDKVRHTWEEMEK-KGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLK 495 (536)
Q Consensus 423 ~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 495 (536)
.+.-. -....+|-.|..-....|.++.|.+.--.+.+ ..+-|....|..|.-+-+....+...-+.|-++...
T Consensus 1012 ~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~~ 1086 (1189)
T KOG2041|consen 1012 LENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEAF 1086 (1189)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhh
Confidence 11000 11244555566666778888888776544443 245677778887766666555555555555555443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0083 Score=47.08 Aligned_cols=91 Identities=20% Similarity=0.121 Sum_probs=57.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCC---CHHHHHHHHHHHH
Q 048749 194 LLNRYAAAHMVEEAIGVFDRRKEFGELDD--LSAFQNLLLWLCRYKHVEVAETFFESEKNEFGY---DIKTMNIILNGWC 268 (536)
Q Consensus 194 li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~li~~~~ 268 (536)
+..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..+++.....++. +......+.-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34566677888888888888888775544 335556667777778888888877775433332 2233333334555
Q ss_pred hcCCHHHHHHHHHHHH
Q 048749 269 VLGNVYEAKRFWKDII 284 (536)
Q Consensus 269 ~~g~~~~A~~~~~~m~ 284 (536)
..|+.++|+..+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 6777777777665544
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00038 Score=51.27 Aligned_cols=80 Identities=16% Similarity=0.227 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048749 134 FDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP-DLVNEKTYGILLNRYAAAHMVEEAIGVFD 212 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 212 (536)
++++.|+.+|+.+.......++...+..+..+|.+.|++++|..+++... .+.+....-.+..++.+.|++++|+++|+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 56777777777777654111134445556777777777777777777633 22333444455667777777777777765
Q ss_pred H
Q 048749 213 R 213 (536)
Q Consensus 213 ~ 213 (536)
+
T Consensus 83 ~ 83 (84)
T PF12895_consen 83 K 83 (84)
T ss_dssp H
T ss_pred c
Confidence 4
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.24 Score=51.37 Aligned_cols=213 Identities=10% Similarity=0.050 Sum_probs=115.5
Q ss_pred hHHHHHHhhcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC-CC
Q 048749 107 GEIEKALNQCELTLTDDLIVNVINRYRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP-DL 185 (536)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~ 185 (536)
.+..+.|++.|..+..-.+.++.....|..++|..+.+.....+ ..|..+...+-..|.+.++.++|..++++.. .-
T Consensus 30 ~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~ 107 (932)
T KOG2053|consen 30 AKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKY 107 (932)
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC
Confidence 34455555556555555554444444467888887777766544 3478888888888888888888888888877 44
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHh-cCC-C
Q 048749 186 VNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKH----------VEVAETFFESE-KNE-F 253 (536)
Q Consensus 186 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~-~~~-~ 253 (536)
|+..-...+..+|++.+.+.+-.++=-+|-+ .++-++..|=++++.....-. ...|...++.+ ..+ -
T Consensus 108 P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk 186 (932)
T KOG2053|consen 108 PSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGK 186 (932)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCc
Confidence 6677777777778877776543333222222 223344444444444432210 12244444443 111 0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 048749 254 GYDIKTMNIILNGWCVLGNVYEAKRFWK-DIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKG 322 (536)
Q Consensus 254 ~~~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 322 (536)
-.+..-...-....-..|.+++|.+++. ...+.-..-+...-+.-+..+...+++.+..++-.++...|
T Consensus 187 ~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 187 IESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 0111111112223335666777777763 33332223333333445555666666666666666666654
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.085 Score=49.58 Aligned_cols=110 Identities=12% Similarity=0.095 Sum_probs=85.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 048749 259 TMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALC 338 (536)
Q Consensus 259 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 338 (536)
+.+..|.-+...|+...|.++-.+.. -||..-|-..+.+++..++|++-.++-.. .-.+.-|-.++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 45555667778899999988877765 68889999999999999999987765432 224578999999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048749 339 FKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEM 388 (536)
Q Consensus 339 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m 388 (536)
+.|+..+|..+...+. +..-+..|.++|++.+|.+.-.+.
T Consensus 249 ~~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HCCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 9999999998887721 245677889999999988765443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.006 Score=58.71 Aligned_cols=90 Identities=7% Similarity=-0.117 Sum_probs=54.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048749 196 NRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYE 275 (536)
Q Consensus 196 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 275 (536)
..+...|++++|++.|++.++.. +.+...|..+..++.+.|++++|...++......+.+...|..+..+|...|++++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 34445566666666666666544 34455555666666666666666666666433334455566666666666666666
Q ss_pred HHHHHHHHHHC
Q 048749 276 AKRFWKDIIKS 286 (536)
Q Consensus 276 A~~~~~~m~~~ 286 (536)
|...|+...+.
T Consensus 89 A~~~~~~al~l 99 (356)
T PLN03088 89 AKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHh
Confidence 66666666654
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.014 Score=49.82 Aligned_cols=83 Identities=14% Similarity=0.053 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 048749 259 TMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPD--SVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDA 336 (536)
Q Consensus 259 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 336 (536)
.+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+.. +-+...+..+...
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 344455555555555555555555554321111 2345555555555666666666555555531 1123334444444
Q ss_pred HHhcCC
Q 048749 337 LCFKKR 342 (536)
Q Consensus 337 ~~~~g~ 342 (536)
+...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 444444
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00072 Score=49.75 Aligned_cols=79 Identities=15% Similarity=0.071 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048749 202 HMVEEAIGVFDRRKEFGEL-DDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFW 280 (536)
Q Consensus 202 g~~~~A~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 280 (536)
|+++.|+.+|+++.+.... ++...+..+..++.+.|+++.|..+++.. ..-+.+......+..++.+.|++++|+++|
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~-~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL-KLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH-THHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4555555555555543311 12223333444555555555555555441 110112222233344444555555555444
Q ss_pred H
Q 048749 281 K 281 (536)
Q Consensus 281 ~ 281 (536)
+
T Consensus 82 ~ 82 (84)
T PF12895_consen 82 E 82 (84)
T ss_dssp H
T ss_pred h
Confidence 3
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0075 Score=51.25 Aligned_cols=58 Identities=10% Similarity=-0.098 Sum_probs=23.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048749 191 YGILLNRYAAAHMVEEAIGVFDRRKEFGELD--DLSAFQNLLLWLCRYKHVEVAETFFES 248 (536)
Q Consensus 191 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~ 248 (536)
|..+...+...|++++|+..|++.......+ ...++..+...+...|++++|...++.
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 97 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQ 97 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3334444444444444444444443321111 112344444444444444444444444
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0072 Score=49.26 Aligned_cols=94 Identities=6% Similarity=-0.046 Sum_probs=56.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh
Q 048749 260 MNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCF 339 (536)
Q Consensus 260 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 339 (536)
...+..-+...|++++|..+|+.+.... +-+..-|..|.-++-..|++++|+..|........ -|+..+-.+..++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHH
Confidence 3344444556666666666666665544 33444555566666666666666666666666543 355556666666666
Q ss_pred cCChHHHHHHHHHHHH
Q 048749 340 KKRIPEALEVLREMKN 355 (536)
Q Consensus 340 ~g~~~~A~~~~~~m~~ 355 (536)
.|+.+.|.+-|+....
T Consensus 116 lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 116 CDNVCYAIKALKAVVR 131 (157)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666665543
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.066 Score=48.36 Aligned_cols=54 Identities=11% Similarity=0.036 Sum_probs=27.4
Q ss_pred HHhcCCHHHHHHHHHHhcCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048749 233 LCRYKHVEVAETFFESEKNEFGYDIKTM---NIILNGWCVLGNVYEAKRFWKDIIKS 286 (536)
Q Consensus 233 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~ 286 (536)
+.+.|+++.|.+.|+.+....+-+...- -.++.+|.+.+++++|...+++.++.
T Consensus 42 ~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 42 KLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3445555555555555433333232222 23444555666666666666666554
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0078 Score=57.93 Aligned_cols=90 Identities=13% Similarity=-0.072 Sum_probs=67.1
Q ss_pred HHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhH
Q 048749 231 LWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGT 310 (536)
Q Consensus 231 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 310 (536)
..+...|+++.|...|++.....+.+...|..+..+|.+.|++++|+..++..++.. +.+...|..+..+|...|++++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 445567788888888887654446677777777888888888888888888877764 3456677777778888888888
Q ss_pred HHHHHHHHHHc
Q 048749 311 ALRLFQAMWEK 321 (536)
Q Consensus 311 a~~~~~~m~~~ 321 (536)
|+..|++..+.
T Consensus 89 A~~~~~~al~l 99 (356)
T PLN03088 89 AKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHh
Confidence 88888887774
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0054 Score=49.99 Aligned_cols=92 Identities=16% Similarity=0.057 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 048749 156 SNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWL 233 (536)
Q Consensus 156 ~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 233 (536)
......+...+...|++++|..+|+... ++-+..-|-.|..++-..|++++|++.|....... +.|+..+-.+..++
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~ 113 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 3344455555666777777777777665 55666667777777777777777777777776665 45666666666777
Q ss_pred HhcCCHHHHHHHHHH
Q 048749 234 CRYKHVEVAETFFES 248 (536)
Q Consensus 234 ~~~~~~~~a~~~~~~ 248 (536)
...|+.+.|++.|+.
T Consensus 114 L~lG~~~~A~~aF~~ 128 (157)
T PRK15363 114 LACDNVCYAIKALKA 128 (157)
T ss_pred HHcCCHHHHHHHHHH
Confidence 777777777777665
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.034 Score=56.08 Aligned_cols=139 Identities=9% Similarity=-0.037 Sum_probs=95.5
Q ss_pred CCCCCCHHHHHHHHHHHHh--c---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--------CHhHHHHHHHH
Q 048749 251 NEFGYDIKTMNIILNGWCV--L---GNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKG--------KLGTALRLFQA 317 (536)
Q Consensus 251 ~~~~~~~~~~~~li~~~~~--~---g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~ 317 (536)
...+.+...|...+.+... . ++.+.|..+|++.++.. +-....|..+..++.... ++..+.+..+.
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 3446677888888877543 2 23678888998888764 223445554444333221 12333344443
Q ss_pred HHHc-CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048749 318 MWEK-GRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 318 m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 392 (536)
.... ....+...|.++.-.....|++++|...++++.+.+ |+...|..+...+...|+.++|.+.+.+....+
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3332 233455677777666777899999999999998875 688899999999999999999999999998866
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.011 Score=50.11 Aligned_cols=60 Identities=8% Similarity=-0.134 Sum_probs=25.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhcCCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048749 226 FQNLLLWLCRYKHVEVAETFFESEKNEFG--Y-DIKTMNIILNGWCVLGNVYEAKRFWKDIIK 285 (536)
Q Consensus 226 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 285 (536)
+..+...+...|++++|...|+......+ + ...++..+...|...|++++|+..++....
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444445555555555544311100 0 122444444445555555555555544443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.051 Score=42.67 Aligned_cols=105 Identities=22% Similarity=0.219 Sum_probs=59.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC----HhhHHHHHHH
Q 048749 263 ILNGWCVLGNVYEAKRFWKDIIKSKCEPD--SVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPD----VVTCNCIIDA 336 (536)
Q Consensus 263 li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~ 336 (536)
+..++-..|+.++|+.+|++....|...+ ...+-.+.+.+...|++++|+.++++..... |+ ......+..+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHH
Confidence 33445566777777777777777664433 2345556666777777777777777766541 22 1122223335
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048749 337 LCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLC 373 (536)
Q Consensus 337 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 373 (536)
+...|+.++|++.+-.... ++...|.--|..|.
T Consensus 85 L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 5666777777776655443 23334544444443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.037 Score=55.83 Aligned_cols=63 Identities=13% Similarity=0.011 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048749 292 SVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNR 356 (536)
Q Consensus 292 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 356 (536)
...|..+.-.....|++++|...+++..+.. |+...|..+...+...|+.++|.+.+++....
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3444444444444555666666665555532 45555555555555566666666665555443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0028 Score=44.31 Aligned_cols=53 Identities=19% Similarity=0.165 Sum_probs=31.2
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048749 339 FKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 339 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 392 (536)
+.|++++|+++|+.+...... +...+..+..+|.+.|++++|.+++..+....
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 456666666666666554322 45555566666666666666666666666543
|
... |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.038 Score=48.57 Aligned_cols=57 Identities=9% Similarity=0.082 Sum_probs=28.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048749 192 GILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFES 248 (536)
Q Consensus 192 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 248 (536)
+.+++.+.-.|.+.-.+.++.+.++...+.++.....|++.-.+.|+.+.|...|+.
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ 237 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQD 237 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 334444444455555555555555544444444444555555555555555555553
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.01 Score=48.97 Aligned_cols=77 Identities=18% Similarity=0.306 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCcHHHHHH
Q 048749 432 DTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRL-----KGMVPEPRTGIL 506 (536)
Q Consensus 432 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ 506 (536)
.+...++..+...|++++|..+.+.+.... +-|...|..+|.+|...|+..+|.+.|+++.. .|+.|++.|..+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l 141 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRAL 141 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHH
Confidence 456678888889999999999999999863 34778999999999999999999999988864 399999998666
Q ss_pred HHH
Q 048749 507 VND 509 (536)
Q Consensus 507 l~~ 509 (536)
.-.
T Consensus 142 ~~~ 144 (146)
T PF03704_consen 142 YRE 144 (146)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.014 Score=52.35 Aligned_cols=101 Identities=14% Similarity=0.059 Sum_probs=75.9
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048749 302 LTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETV 381 (536)
Q Consensus 302 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A 381 (536)
+.+.+++.+|+..|.+.++. .+-|.+-|..-..+|++.|.++.|++=.+........ ...+|..|-.+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l-~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIEL-DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHH
Confidence 45678888888888888885 3346777777888888888888888877777665211 356788888888888888888
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHh
Q 048749 382 YEYLDEMEQKNGSCLPNEITFNYLLKS 408 (536)
Q Consensus 382 ~~~~~~m~~~~~~~~p~~~~~~~ll~~ 408 (536)
.+.|++..+ +.|+..+|-.=|..
T Consensus 169 ~~aykKaLe----ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 169 IEAYKKALE----LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHhhhc----cCCCcHHHHHHHHH
Confidence 888888877 44777766655544
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.45 Score=44.98 Aligned_cols=166 Identities=13% Similarity=0.114 Sum_probs=90.6
Q ss_pred CCHHHHHHHH-HHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHH--HHhcCChHHHHHHHHHHHHCCCCCCHHHH-
Q 048749 290 PDSVTYATFV-NALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDA--LCFKKRIPEALEVLREMKNRGCLPNVTTY- 365 (536)
Q Consensus 290 ~~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~~~- 365 (536)
|...+|..+- .++...|+.++|.++--...+.. ....+...++. +--.++.+.|..-|++....+ |+-..-
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk 240 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSK 240 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHH
Confidence 3334444332 34455677777776666555542 11223333332 224566777777777666542 332211
Q ss_pred --HHHHHHH----------HhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHH
Q 048749 366 --NSLIKHL----------CKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDT 433 (536)
Q Consensus 366 --~~li~~~----------~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~ 433 (536)
..+...+ .+.|++.+|.+.|.+....+ |+ ++.++...
T Consensus 241 ~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~id----P~---------------------------n~~~nakl 289 (486)
T KOG0550|consen 241 SASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNID----PS---------------------------NKKTNAKL 289 (486)
T ss_pred hHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCC----cc---------------------------ccchhHHH
Confidence 1112221 23455666666666555433 22 34667777
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHH-HHHHHH--HHHhcCCHHHHHHHHHHHHHC
Q 048749 434 YNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRS-YTVMIH--GLYDKGRLEDALSYFHEMRLK 495 (536)
Q Consensus 434 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~li~--~~~~~g~~~~A~~~~~~m~~~ 495 (536)
|........+.|+.++|+.--++..+. |... +..+.. ++...++|++|.+-+++..+.
T Consensus 290 Y~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 290 YGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 777777777888888887777766654 4333 233333 344557788888888776654
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0038 Score=43.60 Aligned_cols=47 Identities=19% Similarity=0.154 Sum_probs=18.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048749 201 AHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFES 248 (536)
Q Consensus 201 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 248 (536)
.|++++|+++|+.+.+.. +.+......+..+|.+.|++++|..+++.
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~ 50 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLER 50 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444444444443332 22333333344444444444444444443
|
... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.063 Score=48.55 Aligned_cols=103 Identities=13% Similarity=0.123 Sum_probs=60.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhcCCCCCCHHHH
Q 048749 184 DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYK---HVEVAETFFESEKNEFGYDIKTM 260 (536)
Q Consensus 184 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~ 260 (536)
++.|...|-.|..+|...|+++.|..-|....+.. .+++..+..+..++.... ...++..+|++....-+.|+.+.
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 45666677777777777777777777776666543 344555555544443322 23455666666544445555566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048749 261 NIILNGWCVLGNVYEAKRFWKDIIKSK 287 (536)
Q Consensus 261 ~~li~~~~~~g~~~~A~~~~~~m~~~g 287 (536)
..|...+...|++.+|...|+.|.+..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 666666666666666666666666553
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0093 Score=41.17 Aligned_cols=53 Identities=17% Similarity=0.258 Sum_probs=22.5
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 048749 267 WCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWE 320 (536)
Q Consensus 267 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 320 (536)
+.+.|++++|...|+++++.. +-+...+..+..++...|++++|...|+++.+
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444444444444444433 22333444444444444444444444444433
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.53 Score=44.16 Aligned_cols=314 Identities=14% Similarity=0.094 Sum_probs=183.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--ccCCHHHHHHHHHhCC--CCCCHHHHHHHHHH--HHhcCCHHHHH
Q 048749 135 DWEAAYTFFKWVSREGDYSPGSNVFNAILDVLG--RARRFVELIQVFDEMP--DLVNEKTYGILLNR--YAAAHMVEEAI 208 (536)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~--~~~~g~~~~A~ 208 (536)
.+..+.+.|..-.+..| |.+|-..+. -.|+-..|.++-.+.. ...|....-.++.+ -.-.|+++.|.
T Consensus 68 sP~t~~Ryfr~rKRdrg-------yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar 140 (531)
T COG3898 68 SPYTARRYFRERKRDRG-------YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDAR 140 (531)
T ss_pred CcHHHHHHHHHHHhhhH-------HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHH
Confidence 56667777777666543 444444443 4677777777766654 22344444444443 33568999999
Q ss_pred HHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048749 209 GVFDRRKEFGELDDLS--AFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKS 286 (536)
Q Consensus 209 ~~~~~m~~~g~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 286 (536)
+-|+.|.. .|... -...|.-..-+.|..+.|..+-+.....-+.-...+.+.+...|..|+++.|+++.+.-...
T Consensus 141 ~kfeAMl~---dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~ 217 (531)
T COG3898 141 KKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAA 217 (531)
T ss_pred HHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 99998885 23222 22333334457788888888877765544556778889999999999999999999877654
Q ss_pred C-CCCCHHH--HHHHHHHHH---hcCCHhHHHHHHHHHHHcCCCCCHhhH-HHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 048749 287 K-CEPDSVT--YATFVNALT---KKGKLGTALRLFQAMWEKGRKPDVVTC-NCIIDALCFKKRIPEALEVLREMKNRGCL 359 (536)
Q Consensus 287 g-~~~~~~~--~~~li~~~~---~~g~~~~a~~~~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 359 (536)
. +.+++.- -..|+.+-. -..+...|...-.+..+ +.||..-- ..-..++.+.|+..++-.+++.+-+....
T Consensus 218 ~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH 295 (531)
T COG3898 218 KVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH 295 (531)
T ss_pred HhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC
Confidence 3 4455422 222332221 12344555554444443 44553322 22345678888888888888888877544
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048749 360 PNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILK 439 (536)
Q Consensus 360 p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 439 (536)
|+. + ..|....--|.+.+-++...+... .+|| +......+..
T Consensus 296 P~i--a----~lY~~ar~gdta~dRlkRa~~L~s-lk~n-------------------------------naes~~~va~ 337 (531)
T COG3898 296 PDI--A----LLYVRARSGDTALDRLKRAKKLES-LKPN-------------------------------NAESSLAVAE 337 (531)
T ss_pred hHH--H----HHHHHhcCCCcHHHHHHHHHHHHh-cCcc-------------------------------chHHHHHHHH
Confidence 443 2 234444444444444444433211 2222 3445555566
Q ss_pred HHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCc
Q 048749 440 LYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLY-DKGRLEDALSYFHEMRLKGMVPE 500 (536)
Q Consensus 440 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~ 500 (536)
+-...|++..|..--+..... .|....|-.|.+.-. ..||-.++...+-+.++.--.|+
T Consensus 338 aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPa 397 (531)
T COG3898 338 AALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPA 397 (531)
T ss_pred HHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCc
Confidence 666667776666655555443 566666666665443 34777777777776665433333
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.24 Score=43.47 Aligned_cols=82 Identities=12% Similarity=0.193 Sum_probs=38.1
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCcHHHHHHHHHH
Q 048749 433 TYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLK--GMVPEPRTGILVNDM 510 (536)
Q Consensus 433 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~l~~~ 510 (536)
.+..++.-|=...-..+|...+..+.+. =...--.+..-|.+.|.+..|..-++.++++ +..-.......+...
T Consensus 112 ~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~ 187 (203)
T PF13525_consen 112 EFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEA 187 (203)
T ss_dssp HHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHH
Confidence 3444444444444455555444444321 0001112344566667777777777776665 111112235666666
Q ss_pred HHhhhhhh
Q 048749 511 NIKLKERG 518 (536)
Q Consensus 511 ~~~~~~~~ 518 (536)
+.+.|..+
T Consensus 188 y~~l~~~~ 195 (203)
T PF13525_consen 188 YYKLGLKQ 195 (203)
T ss_dssp HHHTT-HH
T ss_pred HHHhCChH
Confidence 66666665
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0098 Score=41.05 Aligned_cols=58 Identities=16% Similarity=0.162 Sum_probs=36.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048749 334 IDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 334 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 392 (536)
...+.+.|++++|.+.|+.+.+.... +...+..+..++...|++++|...|+++.+..
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34566667777777777777665422 45566666666677777777777777666543
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.049 Score=47.81 Aligned_cols=54 Identities=19% Similarity=0.181 Sum_probs=24.3
Q ss_pred HHHHHccCCHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048749 163 LDVLGRARRFVELIQVFDEMP-----DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKE 216 (536)
Q Consensus 163 i~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 216 (536)
...+.+.|++.+|...|+.+. .+.-..+.-.++.++-+.|+++.|...+++.++
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444555555555555544 112223333444455555555555555555444
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.05 Score=43.19 Aligned_cols=88 Identities=11% Similarity=0.046 Sum_probs=67.0
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHH---------------HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048749 430 STDTYNVILKLYVNWDCEDKVRHTWEEME---------------KKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRL 494 (536)
Q Consensus 430 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~---------------~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 494 (536)
|..++..+|.++++.|+++....+++..- ...+.|+..+..+++.+|+..|++..|+++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 34566777777777777777777766442 123568899999999999999999999999999887
Q ss_pred C-CCCCcHHHHHHHHHHHHhhhhh
Q 048749 495 K-GMVPEPRTGILVNDMNIKLKER 517 (536)
Q Consensus 495 ~-g~~p~~~t~~~l~~~~~~~~~~ 517 (536)
. ++..+..++..|...+...-..
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~s~~ 104 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVLSSK 104 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHhcCC
Confidence 7 7777777888887777766553
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0066 Score=42.53 Aligned_cols=59 Identities=27% Similarity=0.238 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHH
Q 048749 189 KTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYK-HVEVAETFFES 248 (536)
Q Consensus 189 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~ 248 (536)
.+|..+...+...|++++|+..|.+.++.. +.+...|..+..++.+.| ++++|.+.++.
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 344444444444555555555554444433 223334444444444444 34444444443
|
... |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.027 Score=50.62 Aligned_cols=96 Identities=15% Similarity=0.090 Sum_probs=50.8
Q ss_pred HhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 048749 234 CRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALR 313 (536)
Q Consensus 234 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 313 (536)
.+.+++++|+..|.+...-.+.|.+-|..-..+|++.|.++.|++-.+..+..+ +--..+|..|-.+|...|++++|++
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHHHH
Confidence 344555555555555333334455555555555666666666655555544432 2223456666666666666666666
Q ss_pred HHHHHHHcCCCCCHhhHHH
Q 048749 314 LFQAMWEKGRKPDVVTCNC 332 (536)
Q Consensus 314 ~~~~m~~~g~~p~~~~~~~ 332 (536)
.|+..++ +.|+..+|-.
T Consensus 171 aykKaLe--ldP~Ne~~K~ 187 (304)
T KOG0553|consen 171 AYKKALE--LDPDNESYKS 187 (304)
T ss_pred HHHhhhc--cCCCcHHHHH
Confidence 6665555 4555544433
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.012 Score=41.09 Aligned_cols=62 Identities=16% Similarity=0.191 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHhHHHHHHHHHHH
Q 048749 258 KTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKG-KLGTALRLFQAMWE 320 (536)
Q Consensus 258 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~ 320 (536)
.+|..+...+...|++++|+..|++.++.. +-+...|..+..++...| ++++|++.++...+
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 344444555555555555555555554443 223444444445555555 35555555544433
|
... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.77 Score=45.96 Aligned_cols=60 Identities=13% Similarity=0.134 Sum_probs=37.0
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHCCCCCCHH-----------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 048749 436 VILKLYVNWDCEDKVRHTWEEMEKKGMGPDQR-----------SYTVMIHGLYDKGRLEDALSYFHEMRLKGM 497 (536)
Q Consensus 436 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-----------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 497 (536)
.+++.+...|++++|..+-+...+. .||+. -+..--.+|.+.|+-+||..+++++....+
T Consensus 778 siVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnnav 848 (1081)
T KOG1538|consen 778 SLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNAV 848 (1081)
T ss_pred HHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhhh
Confidence 3455566666666666665554432 23321 123334578889999999999998876533
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.099 Score=47.32 Aligned_cols=119 Identities=9% Similarity=-0.019 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC---CHHHHHHH
Q 048749 136 WEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAH---MVEEAIGV 210 (536)
Q Consensus 136 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g---~~~~A~~~ 210 (536)
++....-.+.-.+++ +.|..-|-.|..+|.+.|++..|...|.+.. .+.+...+..+..++.... .-.++.++
T Consensus 138 ~~~l~a~Le~~L~~n--P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 138 MEALIARLETHLQQN--PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 333333344444443 6789999999999999999999999999887 6788888888887766543 36789999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCH
Q 048749 211 FDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDI 257 (536)
Q Consensus 211 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 257 (536)
|+++.... +.|..+..-|...+...|++.+|...|+.|.+..+++.
T Consensus 216 l~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 216 LRQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 99999866 56677777778889999999999999999876655554
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.094 Score=46.20 Aligned_cols=134 Identities=16% Similarity=0.125 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHH---
Q 048749 258 KTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCII--- 334 (536)
Q Consensus 258 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li--- 334 (536)
.+.+.++....-.|.+.-....+.+.++...+.++.....|.+.-.+.|+.+.|...|++..+..-..|..+++.++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 34566667676778888888888888887666777888888888888899988888888776643333444444333
Q ss_pred --HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048749 335 --DALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 335 --~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 392 (536)
..|.-.+++..|...++++...... |....|.=.-+..-.|+...|++.+..|.+..
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3455567777888888777665322 34444433333334578888888888888755
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.019 Score=47.40 Aligned_cols=69 Identities=22% Similarity=0.355 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc-----CCCCCHhh
Q 048749 260 MNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEK-----GRKPDVVT 329 (536)
Q Consensus 260 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~p~~~~ 329 (536)
...++..+...|++++|..+.+.+.... +-|...|..+|.+|...|+..+|.+.|+.+.+. |+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3444445555566666666666555544 345555666666666666666666665554332 55555443
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.29 Score=38.32 Aligned_cols=141 Identities=13% Similarity=0.120 Sum_probs=81.1
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048749 198 YAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAK 277 (536)
Q Consensus 198 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 277 (536)
..-.|.+++..++..+.... .+..-+|-++--....-+-+-..+.++.+.+-+..+ .+|++....
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis------------~C~NlKrVi 76 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS------------KCGNLKRVI 76 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG------------G-S-THHHH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCch------------hhcchHHHH
Confidence 34567788888888777763 345556666655555556666666666665433221 344444444
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048749 278 RFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRG 357 (536)
Q Consensus 278 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 357 (536)
..+-.+ ..+..-....+..+...|+-|.-.+++.++.+. -.+++...-.+..+|.+.|+..++.+++.+.-+.|
T Consensus 77 ~C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 77 ECYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 444322 123334555667777888888888888887653 45677777788888888888888888888887777
Q ss_pred CC
Q 048749 358 CL 359 (536)
Q Consensus 358 ~~ 359 (536)
++
T Consensus 151 ~k 152 (161)
T PF09205_consen 151 LK 152 (161)
T ss_dssp -H
T ss_pred hH
Confidence 54
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.51 Score=39.51 Aligned_cols=123 Identities=16% Similarity=0.162 Sum_probs=61.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHH
Q 048749 220 LDDLSAFQNLLLWLCRYKHVEVAETFFESEKNE-FGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSK---CEPDSVTY 295 (536)
Q Consensus 220 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~ 295 (536)
.|+..--..|..++.+.|+..+|...|++...| +..|....-.+..+....+++..|...++.+.+.. -.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 344444445555555666666666666554333 33455555555555555666666666666555432 1222 23
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHH
Q 048749 296 ATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEA 346 (536)
Q Consensus 296 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 346 (536)
-.+.+.+...|++.+|..-|+..... -|+...-......+.+.|+.+++
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea 212 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREA 212 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHH
Confidence 33445556666666666666665553 33333222223334455544443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.029 Score=39.73 Aligned_cols=67 Identities=15% Similarity=0.183 Sum_probs=53.9
Q ss_pred HHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHH
Q 048749 438 LKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRTGILV 507 (536)
Q Consensus 438 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 507 (536)
-..|.+.+++++|.++++.+...+ +.+...|......+.+.|++++|.+.|+...+. .|+..+...+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~--~p~~~~~~~~ 68 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL--SPDDPDARAL 68 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH--CCCcHHHHHH
Confidence 356889999999999999999874 335677788888999999999999999999974 5666654433
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.089 Score=47.97 Aligned_cols=86 Identities=14% Similarity=0.014 Sum_probs=36.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC--CCCHhhHHHHHHHHHhcC
Q 048749 268 CVLGNVYEAKRFWKDIIKSKCEPD----SVTYATFVNALTKKGKLGTALRLFQAMWEKGR--KPDVVTCNCIIDALCFKK 341 (536)
Q Consensus 268 ~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g 341 (536)
.+.|++++|...|+.+++.- |+ ..++..+...|...|++++|...|+.+.+.-. ......+-.+...+...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 34455555555555554432 21 12344444455555555555555555544210 001122222333344445
Q ss_pred ChHHHHHHHHHHHH
Q 048749 342 RIPEALEVLREMKN 355 (536)
Q Consensus 342 ~~~~A~~~~~~m~~ 355 (536)
+.++|..+|+.+.+
T Consensus 232 ~~~~A~~~~~~vi~ 245 (263)
T PRK10803 232 DTAKAKAVYQQVIK 245 (263)
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555554443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.19 E-value=1.2 Score=42.28 Aligned_cols=248 Identities=12% Similarity=-0.016 Sum_probs=144.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048749 135 DWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFD 212 (536)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 212 (536)
++..|+..+..+++.. +-+..-|.--+..+...|++++|.--...-. .+.......-.-+++...++..+|.+.++
T Consensus 64 ~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~ 141 (486)
T KOG0550|consen 64 TYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLK 141 (486)
T ss_pred hHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhh
Confidence 6777777777777653 3344455555556666666666654443322 11111122222333333333333333322
Q ss_pred ---------------HHHHcCC-CCCHHHHHHHH-HHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHH--HHhcCCH
Q 048749 213 ---------------RRKEFGE-LDDLSAFQNLL-LWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNG--WCVLGNV 273 (536)
Q Consensus 213 ---------------~m~~~g~-~~~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~ 273 (536)
....... +|...++..+- .++.-.|+.+.|..+--.+.+.-. ...+..++++ +--.++.
T Consensus 142 ~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~--~n~~al~vrg~~~yy~~~~ 219 (486)
T KOG0550|consen 142 SKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA--TNAEALYVRGLCLYYNDNA 219 (486)
T ss_pred hhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc--chhHHHHhcccccccccch
Confidence 2222111 23334443332 345567888888776655433222 2233444444 3357888
Q ss_pred HHHHHHHHHHHHCCCCCCHHH-------------HHHHHHHHHhcCCHhHHHHHHHHHHHc---CCCCCHhhHHHHHHHH
Q 048749 274 YEAKRFWKDIIKSKCEPDSVT-------------YATFVNALTKKGKLGTALRLFQAMWEK---GRKPDVVTCNCIIDAL 337 (536)
Q Consensus 274 ~~A~~~~~~m~~~g~~~~~~~-------------~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~~~~~li~~~ 337 (536)
+.|...|++.+..+ |+... |..=.+-..+.|.+..|.+.|.+.+.. ...|+...|-......
T Consensus 220 ~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~ 297 (486)
T KOG0550|consen 220 DKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVN 297 (486)
T ss_pred HHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhh
Confidence 99999998887654 44322 222233456789999999999998874 3556667777777788
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHH-HHHHH--HHHHhcCCHHHHHHHHHHHHhcC
Q 048749 338 CFKKRIPEALEVLREMKNRGCLPNVTT-YNSLI--KHLCKIKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 338 ~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~li--~~~~~~~~~~~A~~~~~~m~~~~ 392 (536)
.+.|+..+|+.--+...+. |..- ...+. .++...++|++|.+-|++..+..
T Consensus 298 ~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 298 IRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred cccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8999999999988888764 4332 22222 34556788999999999887765
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.091 Score=41.70 Aligned_cols=48 Identities=13% Similarity=0.114 Sum_probs=26.1
Q ss_pred CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH-HCCCCCCHHHHHHHHH
Q 048749 323 RKPDVVTCNCIIDALCFKKRIPEALEVLREMK-NRGCLPNVTTYNSLIK 370 (536)
Q Consensus 323 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~li~ 370 (536)
..|+..+..+++.+|+..|++..|+++.+... ..+++.+..+|..|++
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 34555555555555555555555555555543 3344445555555554
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.12 Score=47.26 Aligned_cols=62 Identities=11% Similarity=0.089 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 048749 259 TMNIILNGWCVLGNVYEAKRFWKDIIKSK--CEPDSVTYATFVNALTKKGKLGTALRLFQAMWE 320 (536)
Q Consensus 259 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 320 (536)
++..+...|...|++++|...|+.+.+.- -+.....+..+...+...|+.++|.++|+.+.+
T Consensus 182 A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 182 ANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444444555555555555544321 011122333333444445555555555555444
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.14 E-value=1.4 Score=42.48 Aligned_cols=381 Identities=12% Similarity=0.094 Sum_probs=190.2
Q ss_pred CCHHHHHHHHHHHHhCCCCCCC------HHHHHHHHHHHHccCCHHHHHHHHHhCC-CCCCHHHHHHHHHH--HHhcCCH
Q 048749 134 FDWEAAYTFFKWVSREGDYSPG------SNVFNAILDVLGRARRFVELIQVFDEMP-DLVNEKTYGILLNR--YAAAHMV 204 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~li~~--~~~~g~~ 204 (536)
++..+|.++|..+.... ..+ ....+.++++|... +++.....+.... ..+ ...|-.+..+ +-+.+.+
T Consensus 20 ~~~~esEkifskI~~e~--~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~-~s~~l~LF~~L~~Y~~k~~ 95 (549)
T PF07079_consen 20 KKFQESEKIFSKIYDEK--ESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFG-KSAYLPLFKALVAYKQKEY 95 (549)
T ss_pred hhhhHHHHHHHHHHHHh--hcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhhhH
Confidence 58999999999987653 223 22345666776543 3444444444443 222 3345555444 3367889
Q ss_pred HHHHHHHHHHHHc--CCCCC---H---------HHHHHHHHHHHhcCCHHHHHHHHHHhc-----CCCCCCHHHHHHHHH
Q 048749 205 EEAIGVFDRRKEF--GELDD---L---------SAFQNLLLWLCRYKHVEVAETFFESEK-----NEFGYDIKTMNIILN 265 (536)
Q Consensus 205 ~~A~~~~~~m~~~--g~~~~---~---------~~~~~ll~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~~li~ 265 (536)
.+|++.+..-.+. +..+. . ..=+..+..+...|++.+++.+++++. +....+..+|+.++-
T Consensus 96 ~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vl 175 (549)
T PF07079_consen 96 RKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVL 175 (549)
T ss_pred HHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHH
Confidence 9999988776654 33332 1 111345677889999999999998853 334578888988776
Q ss_pred HHHhcCC---------------HHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHhc--CCHhHHHHHHHHHHHcC
Q 048749 266 GWCVLGN---------------VYEAKRFWKDIIKS------KCEPDSVTYATFVNALTKK--GKLGTALRLFQAMWEKG 322 (536)
Q Consensus 266 ~~~~~g~---------------~~~A~~~~~~m~~~------g~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~g 322 (536)
.+.+.-- ++.+.-+.++|... .+.|.......++....-. .+..--+++++.-...-
T Consensus 176 mlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~y 255 (549)
T PF07079_consen 176 MLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFY 255 (549)
T ss_pred HHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhc
Confidence 6654311 12222222333211 1222222222222222211 11122223333333333
Q ss_pred CCCCHh-hHHHHHHHHHhcCChHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC
Q 048749 323 RKPDVV-TCNCIIDALCFKKRIPEALEVLREMKNRGCL----PNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLP 397 (536)
Q Consensus 323 ~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p 397 (536)
+.|+.. +...++..+.+ +.+++..+-+.+....+. -=..++..++....+.++..+|-+.+.-+..-. |
T Consensus 256 v~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld----p 329 (549)
T PF07079_consen 256 VHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD----P 329 (549)
T ss_pred cCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC----C
Confidence 344422 22233333333 344444443333222111 023456666666666666666666665554422 2
Q ss_pred cHH----------HH-----------------------------------HHHHHhc------CC-CChHHHHHHHHHHC
Q 048749 398 NEI----------TF-----------------------------------NYLLKSL------KK-PEEVPWVLERMERN 425 (536)
Q Consensus 398 ~~~----------~~-----------------------------------~~ll~~~------~~-~~~a~~~~~~~~~~ 425 (536)
+.. +. ..++.+. +. .+.+.++++.+.+.
T Consensus 330 ~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f 409 (549)
T PF07079_consen 330 RISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF 409 (549)
T ss_pred cchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 111 00 0111110 11 22334444444432
Q ss_pred CCCCCHHHHHHHH----HHHHc---cCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHH--HHhcCCHHHHHHHHHHH
Q 048749 426 GCKMSTDTYNVIL----KLYVN---WDCEDKVRHTWEEMEKKGMGPDQ----RSYTVMIHG--LYDKGRLEDALSYFHEM 492 (536)
Q Consensus 426 ~~~~~~~~~~~li----~~~~~---~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~--~~~~g~~~~A~~~~~~m 492 (536)
. +-|..+-|.+. ..|.. ...+.+...+-+-+.+.|++|-. ..-|.|-+| +..+|++.++.-+-.-+
T Consensus 410 t-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL 488 (549)
T PF07079_consen 410 T-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWL 488 (549)
T ss_pred c-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 1 11222222221 22221 23334444444445566766533 344445443 45678888877655544
Q ss_pred HHCCCCCcHHHHHHHHHHHHhhhhhhhhhHHHHHh
Q 048749 493 RLKGMVPEPRTGILVNDMNIKLKERGEQGKKVIKL 527 (536)
Q Consensus 493 ~~~g~~p~~~t~~~l~~~~~~~~~~~~a~~~~~~~ 527 (536)
.+ +.|.+.++.++.-.....+...||-..+.++
T Consensus 489 ~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 489 TK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 43 7888888888888888888888888877765
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.24 Score=48.87 Aligned_cols=153 Identities=12% Similarity=0.113 Sum_probs=82.9
Q ss_pred ccCCHHHHHHHHH--hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048749 168 RARRFVELIQVFD--EMPDLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETF 245 (536)
Q Consensus 168 ~~g~~~~A~~~~~--~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~ 245 (536)
-.|+++++.++.. ++....+..-.+.+++.+-+.|..+.|+++-.+-. .-.....+.|+++.|.++
T Consensus 273 ~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~ 340 (443)
T PF04053_consen 273 LRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEI 340 (443)
T ss_dssp HTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHH
T ss_pred HcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHH
Confidence 3555666544443 22211224456777777777777777776643321 233445677777777766
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC
Q 048749 246 FESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKP 325 (536)
Q Consensus 246 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 325 (536)
-+.. .+...|..|.+...+.|+++-|.+.|.+.. -|..|+-.|.-.|+.+.-.++.+.....|-
T Consensus 341 a~~~-----~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~-- 404 (443)
T PF04053_consen 341 AKEL-----DDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAEERGD-- 404 (443)
T ss_dssp CCCC-----STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT---
T ss_pred HHhc-----CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHHHccC--
Confidence 4432 256677777777777777777777776643 245555566667777666666655555432
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHH
Q 048749 326 DVVTCNCIIDALCFKKRIPEALEVLRE 352 (536)
Q Consensus 326 ~~~~~~~li~~~~~~g~~~~A~~~~~~ 352 (536)
++....++.-.|+.++..+++.+
T Consensus 405 ----~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 405 ----INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp ----HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred ----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444455556666666666544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.14 Score=48.07 Aligned_cols=224 Identities=15% Similarity=0.118 Sum_probs=129.7
Q ss_pred HHHHccCCHHHHHHHHHhCC--CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHH--HHH--cCCC-CCHHHHHHHHHH
Q 048749 164 DVLGRARRFVELIQVFDEMP--DLVNE----KTYGILLNRYAAAHMVEEAIGVFDR--RKE--FGEL-DDLSAFQNLLLW 232 (536)
Q Consensus 164 ~~~~~~g~~~~A~~~~~~~~--~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~--m~~--~g~~-~~~~~~~~ll~~ 232 (536)
.-+++.|+....+.+|+... ...|. ..|..|..+|.-.+++++|++.... ... .|-+ -.......|.+.
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 45789999999999999877 22232 3466677778888889999887532 111 1111 112233445556
Q ss_pred HHhcCCHHHHHHHHHH-h------cCCCCCCHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHH-
Q 048749 233 LCRYKHVEVAETFFES-E------KNEFGYDIKTMNIILNGWCVLGN--------------------VYEAKRFWKDII- 284 (536)
Q Consensus 233 ~~~~~~~~~a~~~~~~-~------~~~~~~~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~- 284 (536)
+--.|.+++|..+-.+ + ...+ .....+..+...|...|. ++.|.++|.+=.
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv-~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRV-LESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHH-hhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 6667788888765433 2 1111 123344455555654332 223444443221
Q ss_pred ---HCCCC-CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc----CC-CCCHhhHHHHHHHHHhcCChHHHHHHHHHHH-
Q 048749 285 ---KSKCE-PDSVTYATFVNALTKKGKLGTALRLFQAMWEK----GR-KPDVVTCNCIIDALCFKKRIPEALEVLREMK- 354 (536)
Q Consensus 285 ---~~g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~- 354 (536)
+.|-. .--..|..|.+.|.-.|+++.|+...+.-... |- ......+..+.+++.-.|+++.|.+.|+...
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 11100 01234666666677778888888766543321 21 1223467778888888888988888887653
Q ss_pred ---HCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048749 355 ---NRGC-LPNVTTYNSLIKHLCKIKRMETVYEYLDEM 388 (536)
Q Consensus 355 ---~~g~-~p~~~~~~~li~~~~~~~~~~~A~~~~~~m 388 (536)
+.|- .....+..+|...|.-..++++|+.++.+-
T Consensus 264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rH 301 (639)
T KOG1130|consen 264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRH 301 (639)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 2221 223455666777888778888888877653
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.12 Score=45.99 Aligned_cols=129 Identities=15% Similarity=0.105 Sum_probs=85.8
Q ss_pred HHHHHHHhCC-CCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048749 174 ELIQVFDEMP-DLVNEKTYGILLNRYAAA-----HMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFE 247 (536)
Q Consensus 174 ~A~~~~~~~~-~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 247 (536)
..++.|+... ...|..+|-+.+..+... +.++-....++.|.+.|+..|..+|+.|++.+-+-.-
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf--------- 122 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF--------- 122 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc---------
Confidence 3455566665 556777777777776644 4466666778889999999999999999987644321
Q ss_pred HhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-hHHHHHHHHHHH
Q 048749 248 SEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKL-GTALRLFQAMWE 320 (536)
Q Consensus 248 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~ 320 (536)
.|.... ....-.|- .+-+-+++++++|...|+.||..+-..|++++.+.+-. .+..++.--|.+
T Consensus 123 ------iP~nvf-Q~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 123 ------IPQNVF-QKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred ------ccHHHH-HHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 222111 11111121 23346889999999999999999999999999887763 334444444443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.034 Score=39.35 Aligned_cols=54 Identities=15% Similarity=0.146 Sum_probs=29.8
Q ss_pred HHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048749 164 DVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEF 217 (536)
Q Consensus 164 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 217 (536)
.+|.+.+++++|.++++.+. .+.+...|.....++.+.|++++|.+.|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34555555555555555555 4445555555555555555555555555555543
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.03 E-value=1.5 Score=41.92 Aligned_cols=33 Identities=6% Similarity=-0.007 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048749 360 PNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 360 p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 392 (536)
.+-..+.+++.++.-.|+.++|.+..++|....
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 355566677888888888888888888887653
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.03 E-value=1.5 Score=41.91 Aligned_cols=31 Identities=13% Similarity=0.057 Sum_probs=21.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048749 465 DQRSYTVMIHGLYDKGRLEDALSYFHEMRLK 495 (536)
Q Consensus 465 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 495 (536)
|.-.+.+++.++.-.|+.++|.+..++|.+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 4444566677777777777777777777765
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.95 E-value=2.3 Score=43.55 Aligned_cols=308 Identities=13% Similarity=0.104 Sum_probs=158.5
Q ss_pred HHHHHHHccCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 048749 161 AILDVLGRARRFVELIQVFDEMPDL--VNEKTYGILLNRYAAAHM--VEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRY 236 (536)
Q Consensus 161 ~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 236 (536)
.+|+-+...+.+..|+++-..+..+ .....|......+.+..+ -+++++.+++=..... -....|..+..-....
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~~ 520 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQE 520 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHhc
Confidence 4567777788888888888877621 124556666666666532 3334444433333222 3444666677777788
Q ss_pred CCHHHHHHHHHHhcCC---CC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----------CCCCHHHHHHHHH
Q 048749 237 KHVEVAETFFESEKNE---FG--YDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSK-----------CEPDSVTYATFVN 300 (536)
Q Consensus 237 ~~~~~a~~~~~~~~~~---~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----------~~~~~~~~~~li~ 300 (536)
|+.+.|..+++.-... ++ .+..-+...+.-+.+.|+.+....++..+...- .+.....|.-+++
T Consensus 521 GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r 600 (829)
T KOG2280|consen 521 GRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMR 600 (829)
T ss_pred CcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHH
Confidence 8888888887763211 11 122234445555666777776666665554310 0111111111111
Q ss_pred --------HHHhcCCHhHHHHHH--HHHH----HcCCCCCHhhHHHHHHHHHhcCChH----------HHHHHHHHHH-H
Q 048749 301 --------ALTKKGKLGTALRLF--QAMW----EKGRKPDVVTCNCIIDALCFKKRIP----------EALEVLREMK-N 355 (536)
Q Consensus 301 --------~~~~~g~~~~a~~~~--~~m~----~~g~~p~~~~~~~li~~~~~~g~~~----------~A~~~~~~m~-~ 355 (536)
.+.+.++-.++..-| +... ..|..|+ ......+|.+..... +-+.+.+.+. +
T Consensus 601 ~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q 677 (829)
T KOG2280|consen 601 HQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQ 677 (829)
T ss_pred hhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 001111111111111 0000 0122222 222333444433311 1112222221 1
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHH
Q 048749 356 RGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYN 435 (536)
Q Consensus 356 ~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 435 (536)
.|.....-+.+--+.-+...|+-.+|.++-.+. -.||...|..-+.++...++.+++.+...... .+.-|.
T Consensus 678 ~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~F------kipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~ 748 (829)
T KOG2280|consen 678 FGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDF------KIPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYL 748 (829)
T ss_pred hccccccCcHHHHHHHHHHccchHHHHHHHHhc------CCcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCch
Confidence 222223334444555566677777777776665 45777777777777777777777666655543 134566
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048749 436 VILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFH 490 (536)
Q Consensus 436 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 490 (536)
-.+..|.+.|+.++|.+.+.+.... .-...+|.+.|++.+|.++.-
T Consensus 749 PFVe~c~~~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 749 PFVEACLKQGNKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred hHHHHHHhcccHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHHHH
Confidence 6777788888888887776654321 145566777777777766543
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=95.94 E-value=1.5 Score=41.30 Aligned_cols=81 Identities=9% Similarity=0.086 Sum_probs=39.9
Q ss_pred CcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048749 397 PNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGL 476 (536)
Q Consensus 397 p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 476 (536)
|+..-|...+.++...++..++.+-..... ++.-|...+..|.+.|+..+|..+...+. +..-+..|
T Consensus 206 ~dkrfw~lki~aLa~~~~w~eL~~fa~skK---sPIGyepFv~~~~~~~~~~eA~~yI~k~~----------~~~rv~~y 272 (319)
T PF04840_consen 206 PDKRFWWLKIKALAENKDWDELEKFAKSKK---SPIGYEPFVEACLKYGNKKEASKYIPKIP----------DEERVEMY 272 (319)
T ss_pred cHHHHHHHHHHHHHhcCCHHHHHHHHhCCC---CCCChHHHHHHHHHCCCHHHHHHHHHhCC----------hHHHHHHH
Confidence 444444444444444444333333222111 22455666666666666666666655411 23344556
Q ss_pred HhcCCHHHHHHHHH
Q 048749 477 YDKGRLEDALSYFH 490 (536)
Q Consensus 477 ~~~g~~~~A~~~~~ 490 (536)
.+.|++.+|.+..-
T Consensus 273 ~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 273 LKCGDYKEAAQEAF 286 (319)
T ss_pred HHCCCHHHHHHHHH
Confidence 66666666665443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.072 Score=49.94 Aligned_cols=257 Identities=15% Similarity=0.150 Sum_probs=154.4
Q ss_pred CCHHHHHHHHHHHHhCCC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHh-------CC-CCCCHHHHHHHHHHHHhcCC
Q 048749 134 FDWEAAYTFFKWVSREGD--YSPGSNVFNAILDVLGRARRFVELIQVFDE-------MP-DLVNEKTYGILLNRYAAAHM 203 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-------~~-~~~~~~~~~~li~~~~~~g~ 203 (536)
++......+|+.+++-+- +..=...|..|.++|.-.+++++|++.... |. ......+-..|...+--.|.
T Consensus 31 gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~ 110 (639)
T KOG1130|consen 31 GDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGA 110 (639)
T ss_pred cchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcc
Confidence 588899999999987651 111144567777777778888888775432 11 11112233334444555566
Q ss_pred HHHHHHHHHH----HHHcCCC-CCHHHHHHHHHHHHhcCC--------------------HHHHHHHHHH---hcCCC--
Q 048749 204 VEEAIGVFDR----RKEFGEL-DDLSAFQNLLLWLCRYKH--------------------VEVAETFFES---EKNEF-- 253 (536)
Q Consensus 204 ~~~A~~~~~~----m~~~g~~-~~~~~~~~ll~~~~~~~~--------------------~~~a~~~~~~---~~~~~-- 253 (536)
+++|+-.-.+ ..+.|-. ....++-.+...|...|+ ++.|.++|.. +....
T Consensus 111 fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgD 190 (639)
T KOG1130|consen 111 FDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGD 190 (639)
T ss_pred cchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 7776654322 2222211 122344455666644432 2345555544 11111
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc----CC
Q 048749 254 -GYDIKTMNIILNGWCVLGNVYEAKRFWKDIIK----SKC-EPDSVTYATFVNALTKKGKLGTALRLFQAMWEK----GR 323 (536)
Q Consensus 254 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~ 323 (536)
..--.+|..|...|.-.|+++.|+...+.-.+ -|- ......+..+.+++.-.|+++.|.+.|+.-... |-
T Consensus 191 r~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~ 270 (639)
T KOG1130|consen 191 RLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGN 270 (639)
T ss_pred HHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcc
Confidence 11223466666777778999999877654322 221 122456788889999999999999988875433 21
Q ss_pred -CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048749 324 -KPDVVTCNCIIDALCFKKRIPEALEVLREMKN----RG-CLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQ 390 (536)
Q Consensus 324 -~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g-~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 390 (536)
......+-+|.+.|.-..++++|+.++.+-.. .+ ..-....|.+|..+|...|..++|+.+...-.+
T Consensus 271 r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 271 RTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 22344566777888888889999998876432 11 112456788899999999999999888766544
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.024 Score=40.83 Aligned_cols=64 Identities=22% Similarity=0.400 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHHC--CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048749 431 TDTYNVILKLYVNWDCEDKVRHTWEEMEKK--GMG---PD-QRSYTVMIHGLYDKGRLEDALSYFHEMRL 494 (536)
Q Consensus 431 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~---p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 494 (536)
..+|+.+...|...|++++|+..|++..+. ... |+ ..++..+..++...|++++|++++++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 356778888888888888888888877642 111 22 44677777788888888888888877653
|
... |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.72 Score=36.24 Aligned_cols=139 Identities=15% Similarity=0.237 Sum_probs=82.4
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHH
Q 048749 339 FKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWV 418 (536)
Q Consensus 339 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~ 418 (536)
-.|..++..++..+.... .+..-||-+|--....-+-+-..++++.+-... | +..|+....+...
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiF-----D-------is~C~NlKrVi~C 78 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIF-----D-------ISKCGNLKRVIEC 78 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-------------GGG-S-THHHHHH
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhc-----C-------chhhcchHHHHHH
Confidence 457777777777777654 355666666665555555566666666554332 1 1223333322222
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 048749 419 LERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMV 498 (536)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 498 (536)
+ ...+ .+...+...++.....|+-|...++..++.+. -.+++...-.+..+|.+-|+..++-+++++.-++|++
T Consensus 79 ~---~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 79 Y---AKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp H---HHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred H---HHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 2 2221 24566777888888999999999998888753 3678888888889999999999999999998888863
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.76 E-value=1.7 Score=40.37 Aligned_cols=164 Identities=13% Similarity=0.069 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHhcCCHHH---HHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048749 224 SAFQNLLLWLCRYKHVEV---AETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVN 300 (536)
Q Consensus 224 ~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 300 (536)
.++..++.++...+..+. |..+++.+...++....++-.-++.+.+.++.+.+.+++..|+..-.. ....+..++.
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~~l~ 163 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHHHHH
Confidence 355667777777776544 555555565555555666666777777788899999999999876321 2334555554
Q ss_pred HH---HhcCCHhHHHHHHHHHHHcCCCCCHh--hHHHHHH---HHHhcCC------hHHHHHHHHHHHH-CCCCCCHHHH
Q 048749 301 AL---TKKGKLGTALRLFQAMWEKGRKPDVV--TCNCIID---ALCFKKR------IPEALEVLREMKN-RGCLPNVTTY 365 (536)
Q Consensus 301 ~~---~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~li~---~~~~~g~------~~~A~~~~~~m~~-~g~~p~~~~~ 365 (536)
.+ .... ...|...++.+....+.|... .=..++. ...+.++ .+...++++...+ .+.+.+..+-
T Consensus 164 ~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~ 242 (278)
T PF08631_consen 164 HIKQLAEKS-PELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA 242 (278)
T ss_pred HHHHHHhhC-cHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 44 3333 345666666666554555443 1111111 1122222 3344444553322 2333343332
Q ss_pred HHH-------HHHHHhcCCHHHHHHHHHHHH
Q 048749 366 NSL-------IKHLCKIKRMETVYEYLDEME 389 (536)
Q Consensus 366 ~~l-------i~~~~~~~~~~~A~~~~~~m~ 389 (536)
.++ ...+.+.++++.|.++|+-..
T Consensus 243 ~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 243 SAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 222 234567899999999988543
|
It is also involved in sporulation []. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.15 Score=49.29 Aligned_cols=66 Identities=6% Similarity=-0.077 Sum_probs=58.4
Q ss_pred CCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048749 428 KMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQ----RSYTVMIHGLYDKGRLEDALSYFHEMRLK 495 (536)
Q Consensus 428 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 495 (536)
+.+...++.+..+|.+.|++++|+..|++..+. .|+. .+|..+..+|...|+.++|+..+++.++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 446788999999999999999999999998886 5664 35899999999999999999999999885
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.79 Score=45.99 Aligned_cols=119 Identities=18% Similarity=0.182 Sum_probs=70.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCCHhHHHHHHHHHHHcC---CCCCHhhHHHHHHHHHhcCChHH
Q 048749 270 LGNVYEAKRFWKDIIKSKCEPDSVTYATFV-NALTKKGKLGTALRLFQAMWEKG---RKPDVVTCNCIIDALCFKKRIPE 345 (536)
Q Consensus 270 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~~~~~li~~~~~~g~~~~ 345 (536)
..+.+.|.++++.+... -|+...|...- +.+...|++++|++.|+...... .+.....+--+.-.+.-..++++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 45667777777777655 46655554433 44566777888877777654321 11122334445556777788888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHH-HHHhcCCH-------HHHHHHHHHHHhc
Q 048749 346 ALEVLREMKNRGCLPNVTTYNSLIK-HLCKIKRM-------ETVYEYLDEMEQK 391 (536)
Q Consensus 346 A~~~~~~m~~~g~~p~~~~~~~li~-~~~~~~~~-------~~A~~~~~~m~~~ 391 (536)
|.+.|..+.+.+-- +..+|.-+.. ++...|+. ++|.++|.+....
T Consensus 324 A~~~f~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 324 AAEYFLRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 88888888764322 3444443333 33445666 7788888776543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.55 E-value=1.2 Score=37.36 Aligned_cols=130 Identities=15% Similarity=0.129 Sum_probs=81.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc---CCCCCHhhH
Q 048749 254 GYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEK---GRKPDVVTC 330 (536)
Q Consensus 254 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~~~ 330 (536)
.|++.--..|..+..+.|+..+|...|++...--..-|....-.+.++....+++..|...++.+.+. +-.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 45666666677777777787788777777665445556666666777777777777777777777664 23333 33
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048749 331 NCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDE 387 (536)
Q Consensus 331 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~ 387 (536)
-.+...+...|.+.+|+.-|+.....-..|....|.. ..+.+.|+.+++..-+..
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~--e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYA--EMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHH--HHHHHhcchhHHHHHHHH
Confidence 4455667777777777777777766533333333332 334566655555443333
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.54 E-value=1.6 Score=43.32 Aligned_cols=160 Identities=14% Similarity=0.084 Sum_probs=108.7
Q ss_pred HHHHHhcCCHHHHHHHHHH-HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH
Q 048749 195 LNRYAAAHMVEEAIGVFDR-RKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNV 273 (536)
Q Consensus 195 i~~~~~~g~~~~A~~~~~~-m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 273 (536)
.....-.|+++++.++.+. -.-..+ +..-.+.++.-+-+.|..+.|+++-. |..+ -.+...+.|++
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~--------D~~~---rFeLAl~lg~L 334 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVT--------DPDH---RFELALQLGNL 334 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS---------HHH---HHHHHHHCT-H
T ss_pred HHHHHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcC--------ChHH---HhHHHHhcCCH
Confidence 3455667899998777752 111112 24557788899999999999998843 3332 23345588999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHH
Q 048749 274 YEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREM 353 (536)
Q Consensus 274 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 353 (536)
+.|.++.++ ..+...|..|.....+.|+++-|.+.|.+..+ |..|+-.|.-.|+.+.-.++.+..
T Consensus 335 ~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 335 DIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp HHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHH
Confidence 999886644 34778999999999999999999999877543 567777899999998888888887
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048749 354 KNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEM 388 (536)
Q Consensus 354 ~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m 388 (536)
...| -+|....++.-.|+.++..+++.+.
T Consensus 400 ~~~~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 400 EERG------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHcc------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 7764 2556666777789999998888764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.023 Score=40.94 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHH
Q 048749 225 AFQNLLLWLCRYKHVEVAETFFES 248 (536)
Q Consensus 225 ~~~~ll~~~~~~~~~~~a~~~~~~ 248 (536)
++..+...+...|++++|++.+++
T Consensus 48 ~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 48 TLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444445555555555555555544
|
... |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.6 Score=38.56 Aligned_cols=87 Identities=8% Similarity=-0.002 Sum_probs=48.2
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048749 302 LTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETV 381 (536)
Q Consensus 302 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A 381 (536)
+...|++++|..+|.-+...+.. +..-+..|..++-..+++++|+..|......+.. |...+--...+|...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHH
Confidence 44566666666666665554322 3334455555555666666666666655433321 333333345566666666666
Q ss_pred HHHHHHHHh
Q 048749 382 YEYLDEMEQ 390 (536)
Q Consensus 382 ~~~~~~m~~ 390 (536)
...|....+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 666666654
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.49 E-value=1.1 Score=36.48 Aligned_cols=129 Identities=12% Similarity=0.179 Sum_probs=79.6
Q ss_pred CCCHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048749 119 TLTDDLIVNVINRYRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMPDLVNEKTYGILLNRY 198 (536)
Q Consensus 119 ~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~ 198 (536)
..++..++..+... +.+.....+++++.+.+ ..+....|.++..|++.+. .+..+.++.- .+......+++.|
T Consensus 7 ~~~~~~vv~~~~~~-~~~~~l~~yLe~~~~~~--~~~~~~~~~li~ly~~~~~-~~ll~~l~~~---~~~yd~~~~~~~c 79 (140)
T smart00299 7 PIDVSEVVELFEKR-NLLEELIPYLESALKLN--SENPALQTKLIELYAKYDP-QKEIERLDNK---SNHYDIEKVGKLC 79 (140)
T ss_pred cCCHHHHHHHHHhC-CcHHHHHHHHHHHHccC--ccchhHHHHHHHHHHHHCH-HHHHHHHHhc---cccCCHHHHHHHH
Confidence 44555666666543 47888999999988775 3677889999999987643 4455555521 2222344577777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 048749 199 AAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRY-KHVEVAETFFESEKNEFGYDIKTMNIILNGWC 268 (536)
Q Consensus 199 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 268 (536)
.+.+.++++..++.++.. +...+..+... ++++.|.+++... .+...|..++..+.
T Consensus 80 ~~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~-----~~~~lw~~~~~~~l 136 (140)
T smart00299 80 EKAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ-----NNPELWAEVLKALL 136 (140)
T ss_pred HHcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC-----CCHHHHHHHHHHHH
Confidence 777777777777766532 12333333333 6677777766552 25556666665544
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.2 Score=44.74 Aligned_cols=33 Identities=18% Similarity=0.300 Sum_probs=19.5
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048749 341 KRIPEALEVLREMKNRGCLPNVTTYNSLIKHLC 373 (536)
Q Consensus 341 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 373 (536)
+.++-....++.|.+.|+.-|..+|+.||+.+-
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfP 118 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFP 118 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCc
Confidence 444545555566666666666666666665543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.31 E-value=2.6 Score=39.77 Aligned_cols=217 Identities=12% Similarity=0.070 Sum_probs=106.4
Q ss_pred hcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHH--HHHHHHHHHh---cCC
Q 048749 304 KKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRG-CLPNVTT--YNSLIKHLCK---IKR 377 (536)
Q Consensus 304 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~--~~~li~~~~~---~~~ 377 (536)
+.|+.+.|..+-+..-..- +--...+...+...|..|+++.|+++++.-.... +.+++.- -..|+.+-.. .-+
T Consensus 166 r~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldad 244 (531)
T COG3898 166 RLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDAD 244 (531)
T ss_pred hcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCC
Confidence 3455555555544443321 1123344555555555566666655555443221 1222111 1111111110 112
Q ss_pred HHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHH
Q 048749 378 METVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEM 457 (536)
Q Consensus 378 ~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 457 (536)
...|.+.-.+..+..+...|-.+.-...+-.-++...+-.+++.+=+.. |....+. +..+.+.|+ .+..-+++.
T Consensus 245 p~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~--lY~~ar~gd--ta~dRlkRa 318 (531)
T COG3898 245 PASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIAL--LYVRARSGD--TALDRLKRA 318 (531)
T ss_pred hHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHH--HHHHhcCCC--cHHHHHHHH
Confidence 3334443333333222223332222222222244444445555554442 3333332 222344554 444444433
Q ss_pred HHC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhh-hhhhhhhHHHHHhhh
Q 048749 458 EKK-GMGP-DQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRTGILVNDMNIKL-KERGEQGKKVIKLTS 529 (536)
Q Consensus 458 ~~~-g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~-~~~~~a~~~~~~~~~ 529 (536)
... .++| +..+--.+..+-...|++..|..--+.... ..|....|-++.++-... |+.+++...+.+-.+
T Consensus 319 ~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 319 KKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 321 2344 456666777888889999888776665554 578888898888887776 888888877776543
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=95.24 E-value=2.6 Score=39.26 Aligned_cols=131 Identities=19% Similarity=0.244 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHhcCCC-CCCcHHHHHHHHHhcCCC----
Q 048749 344 PEALEVLREMKNRGCLPNVTTYNSLIKHLCK--IK----RMETVYEYLDEMEQKNGS-CLPNEITFNYLLKSLKKP---- 412 (536)
Q Consensus 344 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~--~~----~~~~A~~~~~~m~~~~~~-~~p~~~~~~~ll~~~~~~---- 412 (536)
++...+++.|.+.|..-+..+|-+..-.... .. ...+|.++|+.|++..+- ..++...+..+|..-...
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~~~~~~e~l 158 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAMTSEDVEEL 158 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhcccccHHHH
Confidence 3455566667777766665555442222221 11 345677777777776532 234556666666553221
Q ss_pred -ChHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCC--hhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048749 413 -EEVPWVLERMERNGCKMST--DTYNVILKLYVNWDC--EDKVRHTWEEMEKKGMGPDQRSYTVMIH 474 (536)
Q Consensus 413 -~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~li~ 474 (536)
+.++.+++.+.+.|+..+- ...+.++..+..... +.++.++++.+.+.|+++....|..+.-
T Consensus 159 ~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 159 AERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 3445666667666665432 233333333322222 4477888888888888877777665543
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.22 Score=48.18 Aligned_cols=66 Identities=17% Similarity=0.177 Sum_probs=49.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCH----hhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048749 289 EPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDV----VTCNCIIDALCFKKRIPEALEVLREMKNR 356 (536)
Q Consensus 289 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 356 (536)
+.+...|+.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|.+.|+.++|++.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345677888888888888888888888887774 4443 35777888888888888888888888764
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.86 Score=37.66 Aligned_cols=89 Identities=11% Similarity=0.090 Sum_probs=63.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHH
Q 048749 266 GWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPE 345 (536)
Q Consensus 266 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 345 (536)
-+-..|++++|..+|+-+...+ .-+..-|..|..++-..+++++|+..|......+. -|+..+-....+|...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHH
Confidence 3446788888888888877655 33455566666777777888888888887766543 355555566778888888888
Q ss_pred HHHHHHHHHHC
Q 048749 346 ALEVLREMKNR 356 (536)
Q Consensus 346 A~~~~~~m~~~ 356 (536)
|...|....+.
T Consensus 124 A~~~f~~a~~~ 134 (165)
T PRK15331 124 ARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHhC
Confidence 88888877763
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.16 E-value=3.3 Score=39.95 Aligned_cols=146 Identities=15% Similarity=0.166 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhh-HHHHH
Q 048749 257 IKTMNIILNGWCVLGNVYEAKRFWKDIIKSK-CEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVT-CNCII 334 (536)
Q Consensus 257 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~-~~~li 334 (536)
..+|...|..-.+..-++.|..+|-+..+.| +.+++..++++|.-++ .|+...|.++|+--... + ||... -.-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f-~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-F-PDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-C-CCchHHHHHHH
Confidence 4567777787778888899999999999888 7788888899888665 57778888888765553 2 34333 34556
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcC
Q 048749 335 DALCFKKRIPEALEVLREMKNRGCLPN--VTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLK 410 (536)
Q Consensus 335 ~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~ 410 (536)
..+...++-+.|..+|+....+ +..+ ...|..+|.-=.+-|++..+..+=+.|.+. .|...+...+...++
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~----~pQen~~evF~Sry~ 546 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL----VPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH----cCcHhHHHHHHHHHh
Confidence 6677888889999999855432 1112 567888888888889998888888888774 466666666666654
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.95 E-value=2.6 Score=37.63 Aligned_cols=72 Identities=15% Similarity=0.052 Sum_probs=36.3
Q ss_pred HHHHHccCCHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 048749 163 LDVLGRARRFVELIQVFDEMP-----DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLC 234 (536)
Q Consensus 163 i~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 234 (536)
+..-.+.|++++|.+.|+.+. .+-...+.-.++-++-+.+++++|+..+++....--.-....|...|.+++
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 333445666666666666665 222333444445555566666666666666554432222223444444443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.87 E-value=1.6 Score=43.92 Aligned_cols=194 Identities=14% Similarity=0.092 Sum_probs=100.4
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC-CCCCHHHHHH-----HHHHHHhcCCHHHHHHHHHHHHH
Q 048749 143 FKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP-DLVNEKTYGI-----LLNRYAAAHMVEEAIGVFDRRKE 216 (536)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~-----li~~~~~~g~~~~A~~~~~~m~~ 216 (536)
++.+.+++ ..|+... +...++-.|++.+|-++|.+-. ...-...|+- ...-+...|..++-..+.++--+
T Consensus 623 L~~~k~rg-e~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~ 698 (1081)
T KOG1538|consen 623 LEERKKRG-ETPNDLL---LADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRAD 698 (1081)
T ss_pred HHHHHhcC-CCchHHH---HHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Confidence 34444443 4455432 3455666777777777777765 1111122221 12233344444444333332211
Q ss_pred c--CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHH---------h-cCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048749 217 F--GE-LDDLSAFQNLLLWLCRYKHVEVAETFFES---------E-KNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDI 283 (536)
Q Consensus 217 ~--g~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~---------~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 283 (536)
. ++ +|. +....+...|+.++|..+.-. + .+--..+..+...+...+.+...+..|-++|..|
T Consensus 699 WAr~~kePk-----aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~ 773 (1081)
T KOG1538|consen 699 WARNIKEPK-----AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKM 773 (1081)
T ss_pred HhhhcCCcH-----HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHh
Confidence 1 11 121 223334455555555444221 1 1111234445555555555667777777888776
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhh-----------HHHHHHHHHhcCChHHHHHHHHH
Q 048749 284 IKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVT-----------CNCIIDALCFKKRIPEALEVLRE 352 (536)
Q Consensus 284 ~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~-----------~~~li~~~~~~g~~~~A~~~~~~ 352 (536)
-+. ..++......+++++|..+-+...+ +.||++. |.-.-.+|.+.|+..+|.+++++
T Consensus 774 gD~---------ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQ 842 (1081)
T KOG1538|consen 774 GDL---------KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQ 842 (1081)
T ss_pred ccH---------HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHH
Confidence 432 2455666778888888887766554 3344331 23334577888888888888888
Q ss_pred HHHC
Q 048749 353 MKNR 356 (536)
Q Consensus 353 m~~~ 356 (536)
+...
T Consensus 843 Ltnn 846 (1081)
T KOG1538|consen 843 LTNN 846 (1081)
T ss_pred hhhh
Confidence 7653
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.83 E-value=1.6 Score=43.85 Aligned_cols=174 Identities=16% Similarity=0.103 Sum_probs=98.2
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCCCCCC---------HHHHHHHHHHHHh----cCCHH
Q 048749 139 AYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMPDLVN---------EKTYGILLNRYAA----AHMVE 205 (536)
Q Consensus 139 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---------~~~~~~li~~~~~----~g~~~ 205 (536)
+.-+|+-+..- +|| ....++...+=.|+-+.+++++.......+ .-.|+.++..++. ....+
T Consensus 176 G~G~f~L~lSl--LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~ 250 (468)
T PF10300_consen 176 GFGLFNLVLSL--LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLE 250 (468)
T ss_pred HHHHHHHHHHh--CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHH
Confidence 34455555443 233 344555555556666666665555431111 1234444444443 34577
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHhc---CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048749 206 EAIGVFDRRKEFGELDDLSAFQN-LLLWLCRYKHVEVAETFFESEK---NEF-GYDIKTMNIILNGWCVLGNVYEAKRFW 280 (536)
Q Consensus 206 ~A~~~~~~m~~~g~~~~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~---~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~ 280 (536)
.|.++++.+.+. -|+...|.. -...+...|+++.|.+.|+... ... +.....+--+.-.+.-.+++++|.+.|
T Consensus 251 ~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f 328 (468)
T PF10300_consen 251 EAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYF 328 (468)
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHH
Confidence 788888877764 355444433 3345566788888888887632 111 123344555666677788999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHH-HHhcCCH-------hHHHHHHHHHHH
Q 048749 281 KDIIKSKCEPDSVTYATFVNA-LTKKGKL-------GTALRLFQAMWE 320 (536)
Q Consensus 281 ~~m~~~g~~~~~~~~~~li~~-~~~~g~~-------~~a~~~~~~m~~ 320 (536)
..+.+.. .-+...|.-+..+ +...|+. ++|.++|.+...
T Consensus 329 ~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 329 LRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 8888754 2233444433333 3445666 788888887655
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.79 E-value=3.1 Score=37.87 Aligned_cols=50 Identities=22% Similarity=0.123 Sum_probs=24.2
Q ss_pred HHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048749 166 LGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRK 215 (536)
Q Consensus 166 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 215 (536)
....|++.+|..+|+... .+.+...--.+..+|...|+.+.|..++..+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 344555555555555444 23333444444555555555555555554443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.76 E-value=5.8 Score=40.85 Aligned_cols=319 Identities=14% Similarity=0.120 Sum_probs=178.1
Q ss_pred CCCCCHHHHHH-----HHHh--ccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCH--HHHHH-HHHhCCC-C
Q 048749 117 ELTLTDDLIVN-----VINR--YRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRF--VELIQ-VFDEMPD-L 185 (536)
Q Consensus 117 ~~~~~~~~~~~-----~l~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~A~~-~~~~~~~-~ 185 (536)
|+.++...+.. ++.+ .++.+..|+++-.|+.... .....+|.....-+.+..+. +++.+ +=+++.. .
T Consensus 427 gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~--~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 427 GIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPE--SQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred CccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcc--ccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 56666554432 2222 2468999999999985532 22267788888887776322 23333 3333432 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCC---------
Q 048749 186 VNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGE----LDDLSAFQNLLLWLCRYKHVEVAETFFESEKNE--------- 252 (536)
Q Consensus 186 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------- 252 (536)
....+|..+.+.--..|+.+-|..+++.=...+. -.+...+...+.-+.+.|+.+....++-.+...
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~ 584 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMT 584 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 4556788888888899999999988764322221 012223445566677788877776665554321
Q ss_pred ---CCCCHHHHHHHHH--------HHHhcCCHHHHHHHH--HHHHHC-CCCCCHHHHHHHHHHHHhcCCHh---------
Q 048749 253 ---FGYDIKTMNIILN--------GWCVLGNVYEAKRFW--KDIIKS-KCEPDSVTYATFVNALTKKGKLG--------- 309 (536)
Q Consensus 253 ---~~~~~~~~~~li~--------~~~~~g~~~~A~~~~--~~m~~~-g~~~~~~~~~~li~~~~~~g~~~--------- 309 (536)
.+.....|.-+++ .+-..++-.++...| +..... -+.+-........+++.+.....
T Consensus 585 l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~ 664 (829)
T KOG2280|consen 585 LRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQ 664 (829)
T ss_pred HHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 1222223333322 001111111222211 110000 01111122233444455443311
Q ss_pred -HHHHHHHHHHHc-CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048749 310 -TALRLFQAMWEK-GRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDE 387 (536)
Q Consensus 310 -~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~ 387 (536)
+-+++.+.+... |.....-+.+--+.-+...|+..+|.++-.+.+ -||-..|..=+.+++..+++++-+++-+.
T Consensus 665 ~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAks 740 (829)
T KOG2280|consen 665 MKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKS 740 (829)
T ss_pred HHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhc
Confidence 112222223222 333344455666677888999999999888775 37889999999999999999998887766
Q ss_pred HHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHH
Q 048749 388 MEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWE 455 (536)
Q Consensus 388 m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 455 (536)
+.. ..-|.-+..+|-+.+...++-+.+.+.+-. .-.+.+|.+.|++.+|.++--
T Consensus 741 kks--------PIGy~PFVe~c~~~~n~~EA~KYiprv~~l------~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 741 KKS--------PIGYLPFVEACLKQGNKDEAKKYIPRVGGL------QEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred cCC--------CCCchhHHHHHHhcccHHHHhhhhhccCCh------HHHHHHHHHhccHHHHHHHHH
Confidence 532 344556667775555554444444442211 157888999999999887643
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.72 E-value=4.3 Score=39.16 Aligned_cols=147 Identities=11% Similarity=0.090 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCC--hHHHHHHHHHHCCCCCCHHH-HHHHH
Q 048749 362 VTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPE--EVPWVLERMERNGCKMSTDT-YNVIL 438 (536)
Q Consensus 362 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~--~a~~~~~~~~~~~~~~~~~~-~~~li 438 (536)
..+|...|..-.+..-++.|..+|-++.+.+. +.++...+++++..++..+ -|.++|+.=... -||... -+-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~-~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGI-VGHHVYIYCAFIEYYATGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCC-CCcceeeeHHHHHHHhcCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 34577778888888889999999999998874 7789999999999886554 456777643322 223333 35566
Q ss_pred HHHHccCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhh
Q 048749 439 KLYVNWDCEDKVRHTWEEMEKKGMGPD--QRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRTGILVNDMNIKL 514 (536)
Q Consensus 439 ~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~ 514 (536)
.-+...++-..|..+|+...++ +.-+ ...|..+|.--..-|+...+..+-++|.+ +.|...+..+....+.-.
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ik 548 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYAIK 548 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHhhh
Confidence 7778889999999999955443 1123 56899999988999999999999888887 467666655555544433
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.59 E-value=2.1 Score=34.87 Aligned_cols=84 Identities=10% Similarity=0.087 Sum_probs=37.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 048749 193 ILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGN 272 (536)
Q Consensus 193 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 272 (536)
.++..+...+.+.....+++.+...+ ..+...++.++..|++.+. +.....+.. ..+......++..|.+.+.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~-----~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN-----KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh-----ccccCCHHHHHHHHHHcCc
Confidence 44444444555555555555555544 2444455555555554422 222233321 0112222334444555555
Q ss_pred HHHHHHHHHHH
Q 048749 273 VYEAKRFWKDI 283 (536)
Q Consensus 273 ~~~A~~~~~~m 283 (536)
++++..++..+
T Consensus 85 ~~~~~~l~~k~ 95 (140)
T smart00299 85 YEEAVELYKKD 95 (140)
T ss_pred HHHHHHHHHhh
Confidence 55555555443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.50 E-value=5 Score=43.62 Aligned_cols=155 Identities=17% Similarity=0.182 Sum_probs=101.1
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH----HHHHHHhcCCHHHHHH
Q 048749 169 ARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQN----LLLWLCRYKHVEVAET 244 (536)
Q Consensus 169 ~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~----ll~~~~~~~~~~~a~~ 244 (536)
.++++.|+.-+.++. ...|.-.++.--+.|.+.+|+.++ .|+...+.. ...-+.....+++|.-
T Consensus 893 L~ry~~AL~hLs~~~----~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal 960 (1265)
T KOG1920|consen 893 LKRYEDALSHLSECG----ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAAL 960 (1265)
T ss_pred HHHHHHHHHHHHHcC----ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 457777777777765 224555566666777788888776 455554444 4445566778888888
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 048749 245 FFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSV--TYATFVNALTKKGKLGTALRLFQAMWEKG 322 (536)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~g 322 (536)
.|+...+ ..--+.+|-.+|+|.+|+.+-.++... .|.. +-..|+.-+...++.-+|-++..+....
T Consensus 961 ~Ye~~Gk--------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd- 1028 (1265)
T KOG1920|consen 961 MYERCGK--------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD- 1028 (1265)
T ss_pred HHHHhcc--------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC-
Confidence 7776432 123467788889999999888877531 1222 2256777788888888888887776553
Q ss_pred CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 048749 323 RKPDVVTCNCIIDALCFKKRIPEALEVLREMK 354 (536)
Q Consensus 323 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 354 (536)
..-.+..||+...+++|+++-....
T Consensus 1029 -------~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1029 -------PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred -------HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 2334455777777888877765544
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.50 E-value=4 Score=37.83 Aligned_cols=161 Identities=17% Similarity=0.155 Sum_probs=73.3
Q ss_pred hHHHHHHHHHhcCChH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHH
Q 048749 329 TCNCIIDALCFKKRIP---EALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYL 405 (536)
Q Consensus 329 ~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~l 405 (536)
++..++.+|...+..+ +|.++++.+...... ...++-.-+..+.+.++.+.+.+.+..|...- .-....+..+
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~---~~~e~~~~~~ 161 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV---DHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc---ccccchHHHH
Confidence 4555666666655543 455555555433211 23333334455555667777777777776653 1122333333
Q ss_pred HHhc-----CCCChHHHHHHHHHHCCCCCCHH-HHHH-H---HHHHHccCC------hhHHHHHHHHHHH-CCCCCCHHH
Q 048749 406 LKSL-----KKPEEVPWVLERMERNGCKMSTD-TYNV-I---LKLYVNWDC------EDKVRHTWEEMEK-KGMGPDQRS 468 (536)
Q Consensus 406 l~~~-----~~~~~a~~~~~~~~~~~~~~~~~-~~~~-l---i~~~~~~g~------~~~A~~~~~~m~~-~g~~p~~~~ 468 (536)
+..+ .....+...+..+....+.|... .... + +....+.++ ++...++++...+ .+-+.+..+
T Consensus 162 l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 162 LHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 3332 11234445555554433344332 1111 1 111112111 3334444443332 122333333
Q ss_pred H---HHHH----HHHHhcCCHHHHHHHHHHHH
Q 048749 469 Y---TVMI----HGLYDKGRLEDALSYFHEMR 493 (536)
Q Consensus 469 ~---~~li----~~~~~~g~~~~A~~~~~~m~ 493 (536)
- .+|+ ..+.+.+++++|.++|+--.
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 2 2222 34567889999999887543
|
It is also involved in sporulation []. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.38 E-value=4.4 Score=37.79 Aligned_cols=126 Identities=13% Similarity=0.222 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHhcCCCC----CCHHHHHHHHHHHHhcCCH
Q 048749 204 VEEAIGVFDRRKEFGELDDLSAFQNLLLWLCR--YK----HVEVAETFFESEKNEFG----YDIKTMNIILNGWCVLGNV 273 (536)
Q Consensus 204 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~ 273 (536)
+++.+.+++.|.+.|+.-+..+|.+....... .. ....+..+|+.|++..+ ++..++..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45567788899999988888777664443333 11 23446666666654322 344444444433 22222
Q ss_pred ----HHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhc-CC--HhHHHHHHHHHHHcCCCCCHhhHH
Q 048749 274 ----YEAKRFWKDIIKSKCEPDSV-TYATFVNALTKK-GK--LGTALRLFQAMWEKGRKPDVVTCN 331 (536)
Q Consensus 274 ----~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~-g~--~~~a~~~~~~m~~~g~~p~~~~~~ 331 (536)
+.+..+|+.+.+.|...+-. -+.+-+-++... .. ...+.++++.+.+.|+++....|.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp 221 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYP 221 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcccccccc
Confidence 34445555555545333221 122212122111 11 234555555555555555444443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.21 E-value=1.1 Score=42.57 Aligned_cols=61 Identities=15% Similarity=0.031 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 048749 259 TMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWE 320 (536)
Q Consensus 259 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 320 (536)
+++.+.-+|.+.+++..|++.-......+ ++|+-..--=..+|...|+++.|+..|+.+++
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 44555555666666666666666655554 44555555555566666666666666666665
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.21 E-value=1.3 Score=40.74 Aligned_cols=151 Identities=12% Similarity=-0.042 Sum_probs=74.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCH----HHHHHHHHHHHhcCCHHH
Q 048749 200 AAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDI----KTMNIILNGWCVLGNVYE 275 (536)
Q Consensus 200 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~ 275 (536)
..|+..+|-..++++.+ ..+.|..++...=.+|.-.|+.+.-...++++.....+|. .+-..+.-++..+|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~-d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLD-DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHH-hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 34555555555555554 2355555555555566666665555555555433323333 222233333445666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC---HhhHHHHHHHHHhcCChHHHHHHHHH
Q 048749 276 AKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPD---VVTCNCIIDALCFKKRIPEALEVLRE 352 (536)
Q Consensus 276 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~ 352 (536)
|++.-++..+.+ +-|..+-.++...+--.|++.++.++..+-...--..+ .+.|=...-.+...+.++.|+++|+.
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 666665555444 34455555555666666666666665443222100000 01111112223445667777777763
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.64 Score=44.02 Aligned_cols=141 Identities=14% Similarity=0.109 Sum_probs=75.4
Q ss_pred HHHHHHccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 048749 162 ILDVLGRARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEV 241 (536)
Q Consensus 162 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~ 241 (536)
-.+.|.+.|++..|...|++..... -|.+.-+.++..... ..-..++..+..++.+.+++..
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l----------~~~~~~~~ee~~~~~--------~~k~~~~lNlA~c~lKl~~~~~ 275 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFL----------EYRRSFDEEEQKKAE--------ALKLACHLNLAACYLKLKEYKE 275 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHh----------hccccCCHHHHHHHH--------HHHHHHhhHHHHHHHhhhhHHH
Confidence 4456778888888888887754000 000000111111111 1122345556666667777777
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHh-HHHHHHHHHHH
Q 048749 242 AETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLG-TALRLFQAMWE 320 (536)
Q Consensus 242 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~m~~ 320 (536)
|.+.-+.....-+.|+.....-..+|...|+++.|+..|+.+.+.. +-|..+-+.++..--+..+.. ...++|..|..
T Consensus 276 Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 276 AIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7766666544445666666666777777777777777777776653 223333334444333333333 33566666655
Q ss_pred c
Q 048749 321 K 321 (536)
Q Consensus 321 ~ 321 (536)
.
T Consensus 355 k 355 (397)
T KOG0543|consen 355 K 355 (397)
T ss_pred c
Confidence 3
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.92 Score=46.94 Aligned_cols=182 Identities=12% Similarity=0.093 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 048749 189 KTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDL--SAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNG 266 (536)
Q Consensus 189 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 266 (536)
.....-+..+.+...++-|+.+- +..+..++. .......+-+.+.|++++|...|-+.-..+.|.. +|.-
T Consensus 335 k~le~kL~iL~kK~ly~~Ai~LA---k~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~-----Vi~k 406 (933)
T KOG2114|consen 335 KDLETKLDILFKKNLYKVAINLA---KSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSE-----VIKK 406 (933)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHH---HhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHH-----HHHH
Confidence 35566777788888888887764 333333332 2333444556678999999888877443334433 4455
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHH
Q 048749 267 WCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEA 346 (536)
Q Consensus 267 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 346 (536)
|.....+.+-..+++.+.+.|.. +...-..|+.+|.+.++.+.-.++.+.-. .|.. ..-....+..+.+.+-.++|
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEA 482 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHH
Confidence 66667777777888888888853 55556778899999999888776665443 2221 11245567777778878888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048749 347 LEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQ 390 (536)
Q Consensus 347 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 390 (536)
..+-..... +......+ +-..+++++|++.+..+.-
T Consensus 483 ~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp~ 518 (933)
T KOG2114|consen 483 ELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLPI 518 (933)
T ss_pred HHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCCH
Confidence 766655433 23333333 4456889999999987643
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.97 E-value=6.1 Score=40.75 Aligned_cols=180 Identities=16% Similarity=0.114 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHH-----HHccCCHHHHHHHHHhCCC-------CCCHHHHHHHHHHHHhcC-
Q 048749 136 WEAAYTFFKWVSREGDYSPGSNVFNAILDV-----LGRARRFVELIQVFDEMPD-------LVNEKTYGILLNRYAAAH- 202 (536)
Q Consensus 136 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~li~~~~~~g- 202 (536)
...|.++++.+.+.+ +...-..+..+ ++..++++.|...|+.+.. ........-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g----~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG----HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhc----chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCC
Confidence 456778888777766 33333333333 3345678888887776632 223334555666666543
Q ss_pred ----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHh-cCCCCCCHHHHHHHHHHHH--hcCCHH
Q 048749 203 ----MVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCR-YKHVEVAETFFESE-KNEFGYDIKTMNIILNGWC--VLGNVY 274 (536)
Q Consensus 203 ----~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~-~~~~~~~~~~~~~li~~~~--~~g~~~ 274 (536)
+.+.|+.+|.+.-+.| .|+...+...+..... ..+...|.++|... ..| ..+...+.+++.... ...+.+
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G-~~~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG-HILAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred CccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhCCCcCCCHH
Confidence 4566777777777766 4454443333322222 23456677777664 333 222222222222111 234566
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC
Q 048749 275 EAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGR 323 (536)
Q Consensus 275 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 323 (536)
.|..++++..+.| .|...--...+..+.. +..+.+.-.+..+.+.|.
T Consensus 382 ~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred HHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 7777777776666 2222222222233333 566666666666555543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.86 E-value=1.2 Score=35.91 Aligned_cols=80 Identities=16% Similarity=0.109 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048749 157 NVFNAILDVLGRARRFVELIQVFDEMP-----DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLL 231 (536)
Q Consensus 157 ~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 231 (536)
..+..-.....+.|++++|.+.|+.+. .+-...+.-.++.+|.+.+++++|+..+++.++..-.--...|...+.
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 334444455556777777777777776 233445556677777777778887777777777653222344555555
Q ss_pred HHHhc
Q 048749 232 WLCRY 236 (536)
Q Consensus 232 ~~~~~ 236 (536)
+++..
T Consensus 91 gL~~~ 95 (142)
T PF13512_consen 91 GLSYY 95 (142)
T ss_pred HHHHH
Confidence 55443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.6 Score=42.54 Aligned_cols=77 Identities=16% Similarity=0.129 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 048749 156 SNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKE-----FGELDDLSAFQN 228 (536)
Q Consensus 156 ~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~~~~ 228 (536)
..++..++..+..+|+++.+...++++. .+-+...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 4567778888899999999999999887 778899999999999999999999999988764 588888877766
Q ss_pred HHHH
Q 048749 229 LLLW 232 (536)
Q Consensus 229 ll~~ 232 (536)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 6555
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=93.71 E-value=7.2 Score=37.83 Aligned_cols=370 Identities=12% Similarity=0.097 Sum_probs=204.9
Q ss_pred hhcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHhC-CCCCC------------CHHHHHHHHHHHHccCCHHHHHHHHH
Q 048749 114 NQCELTLTDDLIVNVINRYRFDWEAAYTFFKWVSRE-GDYSP------------GSNVFNAILDVLGRARRFVELIQVFD 180 (536)
Q Consensus 114 ~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~-~~~~~------------~~~~~~~li~~~~~~g~~~~A~~~~~ 180 (536)
+..|..+....+..++....+++..|++.+..-..+ .+..+ |-..-+..+..+...|++.+++.+++
T Consensus 73 ~~~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn 152 (549)
T PF07079_consen 73 QQFGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILN 152 (549)
T ss_pred HhcCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 345666666677777777777899998877654332 22222 11222455677888999999999999
Q ss_pred hCC-------CCCCHHHHHHHHHHHHhcCC---------------HHHHHHHHHHHHHc------CCCCCHHHHHHHHHH
Q 048749 181 EMP-------DLVNEKTYGILLNRYAAAHM---------------VEEAIGVFDRRKEF------GELDDLSAFQNLLLW 232 (536)
Q Consensus 181 ~~~-------~~~~~~~~~~li~~~~~~g~---------------~~~A~~~~~~m~~~------g~~~~~~~~~~ll~~ 232 (536)
+|. ..-+..+||.++-.+.+.=- ++.++-...+|... .+.|-...+..++.-
T Consensus 153 ~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqh 232 (549)
T PF07079_consen 153 RIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQH 232 (549)
T ss_pred HHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHH
Confidence 887 23677888886655554311 11222222222211 122333333333322
Q ss_pred HHhcC--CHHHHHHHHHHh-cCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHh
Q 048749 233 LCRYK--HVEVAETFFESE-KNEFGYDIK-TMNIILNGWCVLGNVYEAKRFWKDIIKSKCE----PDSVTYATFVNALTK 304 (536)
Q Consensus 233 ~~~~~--~~~~a~~~~~~~-~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----~~~~~~~~li~~~~~ 304 (536)
..-.. +..--.++++.. ..-+.|+.. +...|+..+.. +.+++..+-+.+....+. .=+.+|..++....+
T Consensus 233 lfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk 310 (549)
T PF07079_consen 233 LFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVK 310 (549)
T ss_pred HHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 21111 111112222221 112334332 23334444433 566666665555443211 124678889999999
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCHhhH-------HHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHH---H
Q 048749 305 KGKLGTALRLFQAMWEKGRKPDVVTC-------NCIIDALCF----KKRIPEALEVLREMKNRGCLPNVTTYNSLI---K 370 (536)
Q Consensus 305 ~g~~~~a~~~~~~m~~~g~~p~~~~~-------~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li---~ 370 (536)
.++...|.+.+.-+.. +.|+...- ..+.+..|. .-+..+-+.+++......+. ......-|+ .
T Consensus 311 ~~~T~~a~q~l~lL~~--ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak 387 (549)
T PF07079_consen 311 QVQTEEAKQYLALLKI--LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAK 387 (549)
T ss_pred HHhHHHHHHHHHHHHh--cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHH
Confidence 9999999988877665 34443321 122233331 11233445555555554332 111222222 2
Q ss_pred HHHhcCC-HHHHHHHHHHHHhcCCCCCCcHHHHHHHHHh----cCC------CChHHHHHHHHHHCCCCCC----HHHHH
Q 048749 371 HLCKIKR-METVYEYLDEMEQKNGSCLPNEITFNYLLKS----LKK------PEEVPWVLERMERNGCKMS----TDTYN 435 (536)
Q Consensus 371 ~~~~~~~-~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~----~~~------~~~a~~~~~~~~~~~~~~~----~~~~~ 435 (536)
-+-+.|. -++|+.+++.+.+-. .-|...-|.+... |.. .....++-+-+.+.|++|- ...-|
T Consensus 388 ~lW~~g~~dekalnLLk~il~ft---~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian 464 (549)
T PF07079_consen 388 HLWEIGQCDEKALNLLKLILQFT---NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIAN 464 (549)
T ss_pred HHHhcCCccHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHH
Confidence 3444555 788999999988743 2344444444332 211 1223344455667888773 44555
Q ss_pred HHHHH--HHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048749 436 VILKL--YVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMR 493 (536)
Q Consensus 436 ~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 493 (536)
.|.++ +...|++.++.-.-..+.+ +.|++.+|..+.-++....++++|+.++.++-
T Consensus 465 ~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 465 FLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 56554 4468999988776555555 58999999999999999999999999998753
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.64 E-value=2.6 Score=33.98 Aligned_cols=52 Identities=13% Similarity=0.061 Sum_probs=22.4
Q ss_pred hcCCHhHHHHHHHHHHHcCCCC---CHhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048749 304 KKGKLGTALRLFQAMWEKGRKP---DVVTCNCIIDALCFKKRIPEALEVLREMKNR 356 (536)
Q Consensus 304 ~~g~~~~a~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 356 (536)
+.|++++|.+.|+.+..+ .+. ....--.++.+|.+.|++++|...+++.++.
T Consensus 22 ~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 444444444444444443 111 1122333444444555555555555544443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.91 Score=41.39 Aligned_cols=78 Identities=14% Similarity=0.210 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH-----cCCCCCHhhHHH
Q 048749 258 KTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWE-----KGRKPDVVTCNC 332 (536)
Q Consensus 258 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~~~ 332 (536)
.++..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345556666666666666666666666654 44566666666777777776666666666554 255665555444
Q ss_pred HHHH
Q 048749 333 IIDA 336 (536)
Q Consensus 333 li~~ 336 (536)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4433
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.56 E-value=2.6 Score=37.96 Aligned_cols=59 Identities=15% Similarity=0.079 Sum_probs=24.2
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcC-CCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048749 297 TFVNALTKKGKLGTALRLFQAMWEKG-RKP-DVVTCNCIIDALCFKKRIPEALEVLREMKN 355 (536)
Q Consensus 297 ~li~~~~~~g~~~~a~~~~~~m~~~g-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 355 (536)
.|..++...|++++|..+|..+.+.- -.| -+..+--|..+..+.|+.++|..+|+++.+
T Consensus 183 WLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 183 WLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34444444444444444444444421 001 112333333444444444444444444443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.52 E-value=3 Score=32.84 Aligned_cols=89 Identities=13% Similarity=0.035 Sum_probs=49.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc-CCCCCHh---hHHHHHHHHHhcCC
Q 048749 267 WCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEK-GRKPDVV---TCNCIIDALCFKKR 342 (536)
Q Consensus 267 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~---~~~~li~~~~~~g~ 342 (536)
.+..|+.+.|++.|.+.+..- +.....||.-..++.-.|+.++|++=+++..+. |-. +.. .|..-...|...|+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhCc
Confidence 445666666666666665442 334556666666666666666666666666553 211 111 12222334556667
Q ss_pred hHHHHHHHHHHHHCC
Q 048749 343 IPEALEVLREMKNRG 357 (536)
Q Consensus 343 ~~~A~~~~~~m~~~g 357 (536)
.+.|..=|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777766666665544
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.43 E-value=6 Score=36.10 Aligned_cols=144 Identities=13% Similarity=0.055 Sum_probs=88.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHhcCCHHH
Q 048749 197 RYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDI-KTMNIILNGWCVLGNVYE 275 (536)
Q Consensus 197 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~ 275 (536)
.....|++.+|..+|....... +-+...-..+..+|...|+.+.|..++..+......+. .....-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 4567788999999998887765 33345566788889999999999999988754332221 121222333444444333
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc--CCCCCHhhHHHHHHHHHhcCChH
Q 048749 276 AKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEK--GRKPDVVTCNCIIDALCFKKRIP 344 (536)
Q Consensus 276 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~ 344 (536)
...+-...... +-|...-..+...+...|+.++|++.+-.+.++ |.. |...-..++..+.-.|..+
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPAD 289 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCC
Confidence 33333333321 236666667777788888888888777666654 333 4455566666666555433
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.30 E-value=4.2 Score=33.86 Aligned_cols=54 Identities=11% Similarity=0.036 Sum_probs=29.9
Q ss_pred HHhcCCHHHHHHHHHHhc-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048749 233 LCRYKHVEVAETFFESEK-NEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKS 286 (536)
Q Consensus 233 ~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 286 (536)
+...|.++++....+.+. .+-+.-...-.+|.-+-.+.|++.+|..+|.++...
T Consensus 142 LvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 142 LVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 345566666666555542 222333344455555555677777777777666554
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.25 E-value=4.3 Score=33.91 Aligned_cols=135 Identities=14% Similarity=0.114 Sum_probs=75.6
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCC-CChHHHHHHHHHHC
Q 048749 347 LEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKK-PEEVPWVLERMERN 425 (536)
Q Consensus 347 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~-~~~a~~~~~~~~~~ 425 (536)
.++++.+.+.|+.|+...|..+|+.+.+.|++.....++ ..+ +.+|.......+-.++. ...+.++--.|.+.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll----q~~--Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL----QYH--VIPDSKPLACQLLSLGNQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----hhc--ccCCcHHHHHHHHHhHccChHHHHHHHHHHHH
Confidence 345555566677777777777777777777655543333 333 44555444444433332 23333333333331
Q ss_pred CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048749 426 GCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLK 495 (536)
Q Consensus 426 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 495 (536)
- ...+..++..+...|++-+|.++.+..... +......++.+-.+.+|...-..+++-..++
T Consensus 88 L----~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 88 L----GTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred h----hhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 0 124566777788888888888887665332 2223345667777777766655555555544
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.01 E-value=2.4 Score=39.16 Aligned_cols=153 Identities=13% Similarity=0.052 Sum_probs=108.6
Q ss_pred hcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHhHH
Q 048749 235 RYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKS---KCEPDSVTYATFVNALTKKGKLGTA 311 (536)
Q Consensus 235 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~~~~~~~~~li~~~~~~g~~~~a 311 (536)
-.|...+|...++++...+|.|...++..=.+|...|+.+.-...++++... +++-....-..+.-++...|-+++|
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 4577777778888888888999999999999999999999999999988754 2222222333344455678999999
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048749 312 LRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCL---PNVTTYNSLIKHLCKIKRMETVYEYLDEM 388 (536)
Q Consensus 312 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p~~~~~~~li~~~~~~~~~~~A~~~~~~m 388 (536)
++.-++..+.+ +.|...-.++...+--.|+..++.+...+-...=-. .-..-|-...-.+...+.++.|+++|+.-
T Consensus 195 Ek~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 195 EKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHH
Confidence 99888887753 346667777888888899999998877654321000 01222333334456678999999999754
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.87 E-value=0.45 Score=29.54 Aligned_cols=29 Identities=17% Similarity=0.183 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048749 190 TYGILLNRYAAAHMVEEAIGVFDRRKEFG 218 (536)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 218 (536)
+|..+...|.+.|++++|.++|++.++..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45556666666666666666666666543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.70 E-value=3.7 Score=42.80 Aligned_cols=176 Identities=16% Similarity=0.191 Sum_probs=111.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHH----HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048749 226 FQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIIL----NGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNA 301 (536)
Q Consensus 226 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 301 (536)
...-++.+++...++.|..+-+.-.. |......+. +-+-+.|++++|...|-+-+.. ++| ..+|.-
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~----d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~k 406 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHL----DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKK 406 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHH
Confidence 34566777788888888777655332 333333333 3344688888888877665421 223 235666
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048749 302 LTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETV 381 (536)
Q Consensus 302 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A 381 (536)
|....++.+-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.+..+... .|.. ..-....+..+.+.+-.++|
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEA 482 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHH
Confidence 66777777778888888888876 45556678888888888888776666554 2221 11234456667777777777
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHH
Q 048749 382 YEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERM 422 (536)
Q Consensus 382 ~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~ 422 (536)
..+-.+.. -+......++...++..+|.+.++.+
T Consensus 483 ~~LA~k~~-------~he~vl~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 483 ELLATKFK-------KHEWVLDILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHhc-------cCHHHHHHHHHHhcCHHHHHHHHhcC
Confidence 76655532 24556667777777777776665543
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.65 E-value=0.27 Score=30.54 Aligned_cols=39 Identities=13% Similarity=0.094 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHH
Q 048749 157 NVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILL 195 (536)
Q Consensus 157 ~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li 195 (536)
.++..+...|.+.|++++|+++|++.. .+.|...|..+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 356777788888888888888888877 566666666554
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=92.61 E-value=11 Score=36.94 Aligned_cols=114 Identities=12% Similarity=0.074 Sum_probs=58.5
Q ss_pred CHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 048749 171 RFVELIQVFDEMP-----DLVNEKTYGILLNRYAAA---------HMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRY 236 (536)
Q Consensus 171 ~~~~A~~~~~~~~-----~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 236 (536)
..+.|..+|.+.. ++.....|..+..++... ....+|.++-++..+.+ +.|..+...+..+..-.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 3456677777655 222244444444333321 22445555555555555 45555555555555555
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048749 237 KHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIK 285 (536)
Q Consensus 237 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 285 (536)
++++.|...|++...-.+-...+|....-...-.|+.++|.+.+++..+
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 5566666666664333233344444444444455666666666666443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.59 E-value=4.1 Score=32.09 Aligned_cols=90 Identities=13% Similarity=0.004 Sum_probs=44.6
Q ss_pred HHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHh
Q 048749 233 LCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSV---TYATFVNALTKKGKLG 309 (536)
Q Consensus 233 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~---~~~~li~~~~~~g~~~ 309 (536)
+...|+++.|.+.|.+...-.+.....||.-..++--.|+.++|++-+++..+..-..+.. .|.--...|...|+-+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd 132 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDD 132 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchH
Confidence 3455555555555555433334455556655555555666666655555554432122221 2222223344556666
Q ss_pred HHHHHHHHHHHcC
Q 048749 310 TALRLFQAMWEKG 322 (536)
Q Consensus 310 ~a~~~~~~m~~~g 322 (536)
.|..=|+..-+.|
T Consensus 133 ~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 133 AARADFEAAAQLG 145 (175)
T ss_pred HHHHhHHHHHHhC
Confidence 6665555555444
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.45 E-value=6.7 Score=34.02 Aligned_cols=83 Identities=17% Similarity=-0.029 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHH
Q 048749 134 FDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMPDLVNEKTYGILLNR--YAAAHMVEEAIGVF 211 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~ 211 (536)
|-+..|+--|....... +.-+.+||.+.--+...|+++.|.+.|+.........-|..+=++ +--.|++.-|.+-|
T Consensus 79 GL~~LAR~DftQaLai~--P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~ 156 (297)
T COG4785 79 GLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDL 156 (297)
T ss_pred hHHHHHhhhhhhhhhcC--CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHH
Confidence 44555555555555532 334778888888888999999999999887722222223332222 23457777777766
Q ss_pred HHHHHcC
Q 048749 212 DRRKEFG 218 (536)
Q Consensus 212 ~~m~~~g 218 (536)
...-+.+
T Consensus 157 ~~fYQ~D 163 (297)
T COG4785 157 LAFYQDD 163 (297)
T ss_pred HHHHhcC
Confidence 5555443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.41 E-value=1.5 Score=39.31 Aligned_cols=95 Identities=20% Similarity=0.094 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCC---CCHHHHHHH
Q 048749 190 TYGILLNRYAAAHMVEEAIGVFDRRKEFGELDD---LSAFQNLLLWLCRYKHVEVAETFFESEKNEFG---YDIKTMNII 263 (536)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l 263 (536)
.|+.-+..+ ..|++..|...|...++.. +.+ ...+--|..++...|++++|..+|..+.+..+ .-...+--|
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 355544433 3444666666666555532 111 22233355555555555555555555432222 122344444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC
Q 048749 264 LNGWCVLGNVYEAKRFWKDIIKS 286 (536)
Q Consensus 264 i~~~~~~g~~~~A~~~~~~m~~~ 286 (536)
.....+.|+.++|...|+++.+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 44455555555555555555543
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=92.08 E-value=0.94 Score=33.35 Aligned_cols=63 Identities=14% Similarity=0.061 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 048749 203 MVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILN 265 (536)
Q Consensus 203 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 265 (536)
+.-++.+-++.+....+.|++....+.+.+|.+.+++..|.++|+.++.+...+...|..++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHH
Confidence 344566677777777888888888888888888888888888888876544444445555443
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.06 E-value=8.6 Score=34.41 Aligned_cols=175 Identities=14% Similarity=0.121 Sum_probs=94.9
Q ss_pred HHhcCCHhHHHHHHHHHHHcC--CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----
Q 048749 302 LTKKGKLGTALRLFQAMWEKG--RKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKI---- 375 (536)
Q Consensus 302 ~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---- 375 (536)
-.+.|++++|.+.|+.+..+. -+-...+.-.++.++.+.+++++|+..+++....-..-....|-.-|.+++.-
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQID 123 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCC
Confidence 345677777777777776541 11123445556666777777777777777776543222223333334443321
Q ss_pred ---CCH---HHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhH
Q 048749 376 ---KRM---ETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDK 449 (536)
Q Consensus 376 ---~~~---~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 449 (536)
.+. ..|+.-|++.+..- || .+-+..+-..|....-. =...=..+.+-|.+.|.+..
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~ry----Pn-------------S~Ya~dA~~~i~~~~d~-LA~~Em~IaryY~kr~~~~A 185 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQRY----PN-------------SRYAPDAKARIVKLNDA-LAGHEMAIARYYLKRGAYVA 185 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHHC----CC-------------CcchhhHHHHHHHHHHH-HHHHHHHHHHHHHHhcChHH
Confidence 122 23333344444433 22 21111111222111000 01112346678889999999
Q ss_pred HHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048749 450 VRHTWEEMEKKGMGPD---QRSYTVMIHGLYDKGRLEDALSYFHEMRLK 495 (536)
Q Consensus 450 A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 495 (536)
|..-+++|.+. .+-+ ...+-.|..+|...|-.++|...-+-+..+
T Consensus 186 A~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 186 AINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 99999999886 2222 234566678888899988888876665543
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.87 E-value=15 Score=36.95 Aligned_cols=81 Identities=11% Similarity=0.158 Sum_probs=64.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHH
Q 048749 134 FDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGR-ARRFVELIQVFDEMP-----DLVNEKTYGILLNRYAAAHMVEEA 207 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A 207 (536)
|..+.+.++|+..... ++.+...|...+..+.. .|+.+...+.|+... .-.+...|...|.--...+++...
T Consensus 93 g~~~~s~~Vfergv~a--ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v 170 (577)
T KOG1258|consen 93 GNAENSVKVFERGVQA--IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRV 170 (577)
T ss_pred hhHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHH
Confidence 5788889999998874 67778888777766654 678888888888876 334556889999888888889999
Q ss_pred HHHHHHHHH
Q 048749 208 IGVFDRRKE 216 (536)
Q Consensus 208 ~~~~~~m~~ 216 (536)
..+|++.++
T Consensus 171 ~~iyeRile 179 (577)
T KOG1258|consen 171 ANIYERILE 179 (577)
T ss_pred HHHHHHHHh
Confidence 999999886
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.71 E-value=8.6 Score=33.68 Aligned_cols=204 Identities=17% Similarity=0.068 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHH-
Q 048749 188 EKTYGILLNRYAAAHMVEEAIGVFDRRKEF-GELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILN- 265 (536)
Q Consensus 188 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~- 265 (536)
...+......+...+.+..+...+...... ........+......+...+....+...+.........+.........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 345555566666666666666666555542 223344445555555555666666666666543221212222222222
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCh
Q 048749 266 GWCVLGNVYEAKRFWKDIIKSKC--EPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRI 343 (536)
Q Consensus 266 ~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 343 (536)
.+...|+++.|...+.+...... ......+......+...++.+.+...+..............+..+...+...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 56667777777777777644211 0122333333344556677777777777766642111345566666667777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048749 344 PEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 344 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 392 (536)
+.|...+......... ....+..+...+...+..+.+...+.......
T Consensus 219 ~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 219 EEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred HHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7777777776654211 13333444444445566777777777666644
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=91.63 E-value=12 Score=35.21 Aligned_cols=125 Identities=14% Similarity=0.081 Sum_probs=54.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc----CCCCCHh-hHH-
Q 048749 263 ILNGWCVLGNVYEAKRFWKDIIKSK-----CEPDSVTYATFVNALTKKGKLGTALRLFQAMWEK----GRKPDVV-TCN- 331 (536)
Q Consensus 263 li~~~~~~g~~~~A~~~~~~m~~~g-----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~~~-~~~- 331 (536)
+..++.-.+.++++++.|+...+-. .-....++..|-+.|.+..++++|.-+.....+. ++. |.. -|.
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~ 206 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRA 206 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHH
Confidence 3344444455555555555443311 0111234555555555555555555443333221 111 111 111
Q ss_pred ----HHHHHHHhcCChHHHHHHHHHHH----HCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048749 332 ----CIIDALCFKKRIPEALEVLREMK----NRGCLP-NVTTYNSLIKHLCKIKRMETVYEYLDEM 388 (536)
Q Consensus 332 ----~li~~~~~~g~~~~A~~~~~~m~----~~g~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~m 388 (536)
.|.-++...|.+..|.+.-++.. ..|-.+ -......+.+.|...|+.|.|+.-|++.
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 12234445555555555555442 222211 1223334455566666666666655543
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.45 E-value=9.2 Score=33.50 Aligned_cols=202 Identities=18% Similarity=0.143 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 048749 257 IKTMNIILNGWCVLGNVYEAKRFWKDIIKS-KCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIID 335 (536)
Q Consensus 257 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 335 (536)
...+......+...+++..+...+...... ........+......+...+++..+.+.+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 344555555555566666665555555431 113334444455555555555666666666555532222 111112222
Q ss_pred -HHHhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCC
Q 048749 336 -ALCFKKRIPEALEVLREMKNRGC--LPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKP 412 (536)
Q Consensus 336 -~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~ 412 (536)
.+...|+++.|...+.+...... ......+......+...++.+.+...+....... ++.
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~----~~~------------- 200 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN----PDD------------- 200 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC----ccc-------------
Confidence 56666666666666666644211 0122333333333555666666666666665543 110
Q ss_pred ChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048749 413 EEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPD-QRSYTVMIHGLYDKGRLEDALSYFHE 491 (536)
Q Consensus 413 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~ 491 (536)
....+..+...+...++++.|...+...... .|+ ...+..+...+...|..+++...+.+
T Consensus 201 -----------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (291)
T COG0457 201 -----------------DAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEK 261 (291)
T ss_pred -----------------chHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHH
Confidence 3445555566666666777777777766654 232 33444444444455667777777766
Q ss_pred HHHC
Q 048749 492 MRLK 495 (536)
Q Consensus 492 m~~~ 495 (536)
....
T Consensus 262 ~~~~ 265 (291)
T COG0457 262 ALEL 265 (291)
T ss_pred HHHh
Confidence 6653
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=91.26 E-value=5.6 Score=36.29 Aligned_cols=119 Identities=15% Similarity=0.145 Sum_probs=81.0
Q ss_pred CCCcHHHHHHHHHhcCC-----CChHHHHHHHHHH-CCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHC-CCCCCHH
Q 048749 395 CLPNEITFNYLLKSLKK-----PEEVPWVLERMER-NGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKK-GMGPDQR 467 (536)
Q Consensus 395 ~~p~~~~~~~ll~~~~~-----~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~ 467 (536)
+.-|..+...++..... .....++.+.+.. .+-.++..+...++..++..+++++..++|+..... +..-|..
T Consensus 160 Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~r 239 (292)
T PF13929_consen 160 IIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPR 239 (292)
T ss_pred eeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCc
Confidence 33445555555554422 1222344444443 445778888999999999999999999999988765 5667889
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH-----HHCCCCCcHHHHHHHHHHHHh
Q 048749 468 SYTVMIHGLYDKGRLEDALSYFHEM-----RLKGMVPEPRTGILVNDMNIK 513 (536)
Q Consensus 468 ~~~~li~~~~~~g~~~~A~~~~~~m-----~~~g~~p~~~t~~~l~~~~~~ 513 (536)
.|..+|......|+..-...+.++= .+.|+..++.....+.+.+.+
T Consensus 240 pW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~ 290 (292)
T PF13929_consen 240 PWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKK 290 (292)
T ss_pred hHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHh
Confidence 9999999999999976666555431 233566666666666665544
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.26 E-value=0.56 Score=27.59 Aligned_cols=26 Identities=15% Similarity=0.287 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048749 468 SYTVMIHGLYDKGRLEDALSYFHEMR 493 (536)
Q Consensus 468 ~~~~li~~~~~~g~~~~A~~~~~~m~ 493 (536)
+|..|...|.+.|++++|++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677788888888888888888754
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.17 E-value=8 Score=32.28 Aligned_cols=136 Identities=10% Similarity=0.069 Sum_probs=86.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHh-hHHHH
Q 048749 256 DIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPD-SVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVV-TCNCI 333 (536)
Q Consensus 256 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~l 333 (536)
+...|..-+. .++.+..++|+.-|.++.+.|...= +..-.-+.....+.|+...|...|+++-...-.|-.. -...|
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 3344544444 3467788888888888887763211 2222333445677888888999898887754444433 11222
Q ss_pred --HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048749 334 --IDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 334 --i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 392 (536)
...+...|.++......+-+-..+-+.-...-.+|--+-.+.|++.+|.+.|..+....
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 12345778888887777776554433344445566667778899999999998887755
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.13 E-value=3.4 Score=35.18 Aligned_cols=62 Identities=10% Similarity=0.155 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 048749 259 TMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPD--SVTYATFVNALTKKGKLGTALRLFQAMWE 320 (536)
Q Consensus 259 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 320 (536)
.+..+...|++.|+.+.|.+.|.++.+....+. ...+-.+|+.....+++..+...+.+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456666667777777777777777665433322 23455566666666666666666655544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.11 E-value=3.8 Score=41.01 Aligned_cols=150 Identities=13% Similarity=0.084 Sum_probs=96.1
Q ss_pred ccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048749 168 RARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFE 247 (536)
Q Consensus 168 ~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 247 (536)
-.|+++.|..++..++ ....+.++..+.+.|..++|+++- +|..- -.....+.|+++.|.++..
T Consensus 598 mrrd~~~a~~vLp~I~----k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIP----KEIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAFDLAV 661 (794)
T ss_pred hhccccccccccccCc----hhhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHHHHHH
Confidence 3566666666555553 335666777777777777776542 22221 1223456788888877766
Q ss_pred HhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCH
Q 048749 248 SEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDV 327 (536)
Q Consensus 248 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 327 (536)
+.. +..-|..|.++....|++..|.+.|.... -|..|+-.+...|+-+....+-....+.|..
T Consensus 662 e~~-----s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~---------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~--- 724 (794)
T KOG0276|consen 662 EAN-----SEVKWRQLGDAALSAGELPLASECFLRAR---------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKN--- 724 (794)
T ss_pred hhc-----chHHHHHHHHHHhhcccchhHHHHHHhhc---------chhhhhhhhhhcCChhHHHHHHHHHHhhccc---
Confidence 543 56668888888888888888888886654 2556666677777776666665565555543
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHH
Q 048749 328 VTCNCIIDALCFKKRIPEALEVLREM 353 (536)
Q Consensus 328 ~~~~~li~~~~~~g~~~~A~~~~~~m 353 (536)
|....+|...|+++++.+++..-
T Consensus 725 ---N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 725 ---NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ---chHHHHHHHcCCHHHHHHHHHhc
Confidence 23334566778888888777654
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=90.81 E-value=0.85 Score=33.97 Aligned_cols=60 Identities=15% Similarity=0.119 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 048749 206 EAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILN 265 (536)
Q Consensus 206 ~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 265 (536)
+..+-++.+....+.|++....+.+.+|.+.+++..|.++|+.++.+..+....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 556666777777788888888888888888888888888888875544433335555443
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=90.66 E-value=0.69 Score=27.20 Aligned_cols=26 Identities=19% Similarity=0.167 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048749 190 TYGILLNRYAAAHMVEEAIGVFDRRK 215 (536)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~ 215 (536)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35667777777777777777777643
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=90.40 E-value=8.9 Score=32.67 Aligned_cols=59 Identities=3% Similarity=-0.055 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHhCC-CC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048749 157 NVFNAILDVLGRARRFVELIQVFDEMP-DL----VNEKTYGILLNRYAAAHMVEEAIGVFDRRK 215 (536)
Q Consensus 157 ~~~~~li~~~~~~g~~~~A~~~~~~~~-~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 215 (536)
..+..+.+.|.+.|+.+.|.+.|.++. .. .-...+-.+|+.....+++..+...+.+..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 456677777777777777777777776 11 122345666777777777777777666554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=90.40 E-value=17 Score=34.86 Aligned_cols=65 Identities=14% Similarity=0.094 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048749 430 STDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGP---DQRSYTVMIHGLYDKGRLEDALSYFHEMRL 494 (536)
Q Consensus 430 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 494 (536)
...+|..+...+.+.|.++.|...+..+...+... ++...-.-...+...|+.++|+..+++.+.
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34566667777777777777777777766543111 222333334455566777777777766665
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=89.74 E-value=18 Score=34.09 Aligned_cols=126 Identities=12% Similarity=0.071 Sum_probs=63.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC-cH-HHHH--
Q 048749 333 IIDALCFKKRIPEALEVLREMKNRGC-----LPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLP-NE-ITFN-- 403 (536)
Q Consensus 333 li~~~~~~g~~~~A~~~~~~m~~~g~-----~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p-~~-~~~~-- 403 (536)
+-.++...+.++++++.|+...+.-. .....+|-.|-..|.+..++++|.-+..+..+.-..+.. |. .-|.
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 44455555566666666665543211 112334556666666666666666555444332110111 11 1111
Q ss_pred ------HHHHhcCCCChHHHHHHHHH----HCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHH
Q 048749 404 ------YLLKSLKKPEEVPWVLERME----RNGCKM-STDTYNVILKLYVNWDCEDKVRHTWEEME 458 (536)
Q Consensus 404 ------~ll~~~~~~~~a~~~~~~~~----~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 458 (536)
.-++..++.++|.+.-++.. ..|-.+ -......+.+.|-..|+.+.|+.-|+...
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 11223356666665444433 344222 23344567778888888888877776543
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.15 E-value=16 Score=32.53 Aligned_cols=206 Identities=10% Similarity=0.058 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 048749 156 SNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWL 233 (536)
Q Consensus 156 ~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 233 (536)
...|..-..+|....++++|...+.+.. ...+...|. - ..-++.|.-+.++|.+.. --...|......|
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfh-A------AKayEqaamLake~~kls--Evvdl~eKAs~lY 101 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFH-A------AKAYEQAAMLAKELSKLS--EVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHH-H------HHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHH
Confidence 3445555566667777777777666554 111111111 1 122344444444444321 1123455566677
Q ss_pred HhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CC--CCCCHHHHHHHHHHHHhcCCH
Q 048749 234 CRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIK---SK--CEPDSVTYATFVNALTKKGKL 308 (536)
Q Consensus 234 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g--~~~~~~~~~~li~~~~~~g~~ 308 (536)
..+|.++.|-..+++..+ ....-++++|++++++... .+ .+.-...+..+-+.+.+..++
T Consensus 102 ~E~GspdtAAmaleKAak---------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAK---------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred HHhCCcchHHHHHHHHHH---------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 777777777666665311 0122334445554444321 11 111122344445556666666
Q ss_pred hHHHHHHHHHHHc----CCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHH
Q 048749 309 GTALRLFQAMWEK----GRKPD-VVTCNCIIDALCFKKRIPEALEVLREMKNRG---CLPNVTTYNSLIKHLCKIKRMET 380 (536)
Q Consensus 309 ~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~li~~~~~~~~~~~ 380 (536)
++|-..+..-... .-.++ -..|...|-.|....++..|...++.--+.+ -.-+..+...|+.+|- .|+.++
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~ 245 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEE 245 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHH
Confidence 6655444332221 11112 1234455555666678888888887643321 1224566667777663 466666
Q ss_pred HHHHHH
Q 048749 381 VYEYLD 386 (536)
Q Consensus 381 A~~~~~ 386 (536)
+.+++.
T Consensus 246 ~~kvl~ 251 (308)
T KOG1585|consen 246 IKKVLS 251 (308)
T ss_pred HHHHHc
Confidence 655543
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=88.88 E-value=0.52 Score=27.34 Aligned_cols=24 Identities=13% Similarity=0.282 Sum_probs=17.2
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHH
Q 048749 153 SPGSNVFNAILDVLGRARRFVELI 176 (536)
Q Consensus 153 ~~~~~~~~~li~~~~~~g~~~~A~ 176 (536)
+.+..+|+.+..+|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 456777777777777777777765
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.55 E-value=17 Score=32.27 Aligned_cols=57 Identities=12% Similarity=0.217 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048749 432 DTYNVILKLYVNWDCEDKVRHTWEEMEKKG---MGPDQRSYTVMIHGLYDKGRLEDALSYF 489 (536)
Q Consensus 432 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~li~~~~~~g~~~~A~~~~ 489 (536)
..|...|-.|....++..|...++.--..+ -.-+..+...|+.+|- .||.+++..++
T Consensus 191 k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 191 KAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHHH
Confidence 346666777777788889999888754431 1235567778887774 47777766544
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=88.53 E-value=35 Score=35.84 Aligned_cols=73 Identities=19% Similarity=0.036 Sum_probs=46.2
Q ss_pred HccCChhHHHHHHHHHHHCC--CC----CCHHHHHHHHHHH--HhcCCHHHHHHHHH--------HHHHCCCCCcHHHHH
Q 048749 442 VNWDCEDKVRHTWEEMEKKG--MG----PDQRSYTVMIHGL--YDKGRLEDALSYFH--------EMRLKGMVPEPRTGI 505 (536)
Q Consensus 442 ~~~g~~~~A~~~~~~m~~~g--~~----p~~~~~~~li~~~--~~~g~~~~A~~~~~--------~m~~~g~~p~~~t~~ 505 (536)
+-.|++..|...++.|.+.. .+ .....+..++.|. ...|+.+.|+..|. .....+...+..++.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 45688989999999888641 11 1223444445443 35599999999997 555556666666665
Q ss_pred HHHHHHHhh
Q 048749 506 LVNDMNIKL 514 (536)
Q Consensus 506 ~l~~~~~~~ 514 (536)
.+-.+.+..
T Consensus 452 ~LNl~~I~~ 460 (608)
T PF10345_consen 452 ALNLAIILQ 460 (608)
T ss_pred HHHHHHHhH
Confidence 544444443
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=88.41 E-value=13 Score=30.73 Aligned_cols=16 Identities=25% Similarity=0.399 Sum_probs=7.7
Q ss_pred hcCCHHHHHHHHHHHH
Q 048749 269 VLGNVYEAKRFWKDII 284 (536)
Q Consensus 269 ~~g~~~~A~~~~~~m~ 284 (536)
+.|++.+|.++|+++.
T Consensus 56 ~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 56 VRGDWDDALRLLRELE 71 (160)
T ss_pred HhCCHHHHHHHHHHHh
Confidence 4444555555554443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=88.31 E-value=28 Score=34.33 Aligned_cols=111 Identities=9% Similarity=-0.017 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCChHHHHHHH
Q 048749 272 NVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPD-VVTCNCIIDALCFKKRIPEALEVL 350 (536)
Q Consensus 272 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~ 350 (536)
+..+|.++-+...+.+ +-|..+...+..+....++++.|..+|++.... .|| ..+|......+.-+|+.++|.+.+
T Consensus 319 ~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 319 AAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred HHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3445666666666655 456666666666666666677777777776663 333 223333333345567777777777
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048749 351 REMKNRGCLP-NVTTYNSLIKHLCKIKRMETVYEYLD 386 (536)
Q Consensus 351 ~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~A~~~~~ 386 (536)
++..+....- -.......|+.|+. ...+.|.++|-
T Consensus 396 ~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 431 (458)
T PRK11906 396 DKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNIKLYY 431 (458)
T ss_pred HHHhccCchhhHHHHHHHHHHHHcC-CchhhhHHHHh
Confidence 7755442111 12222223334443 33555555544
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.06 E-value=21 Score=32.65 Aligned_cols=58 Identities=14% Similarity=0.092 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHH
Q 048749 295 YATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREM 353 (536)
Q Consensus 295 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 353 (536)
++...+.|...|.+.+|.++.+..... -+.+...+-.++..++..|+--.|.+-++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltl-dpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTL-DPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhc-ChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 344555666667777777666666554 2335555666666677777655555555554
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.56 E-value=1.6 Score=25.03 Aligned_cols=27 Identities=22% Similarity=0.454 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048749 468 SYTVMIHGLYDKGRLEDALSYFHEMRL 494 (536)
Q Consensus 468 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 494 (536)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455566666666666666666666654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=87.05 E-value=25 Score=32.54 Aligned_cols=231 Identities=13% Similarity=0.037 Sum_probs=118.1
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH----HHHHHHHHHHHHcCCCCCHHHHHHHH
Q 048749 155 GSNVFNAILDVLGRARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMV----EEAIGVFDRRKEFGELDDLSAFQNLL 230 (536)
Q Consensus 155 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~~~~~~~~~ll 230 (536)
|..+....+..+...|.. ++...+..+....|...-...+.++.+.|+. .++...+..+... .++..+-...+
T Consensus 36 d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~ 112 (280)
T PRK09687 36 NSLKRISSIRVLQLRGGQ-DVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAI 112 (280)
T ss_pred CHHHHHHHHHHHHhcCcc-hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHH
Confidence 444555555555555542 2223333333234555555666666666652 4566666555332 35555555555
Q ss_pred HHHHhcCCH-----HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048749 231 LWLCRYKHV-----EVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKK 305 (536)
Q Consensus 231 ~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 305 (536)
.++...+.. ..+...+.... ..++..+-...+.++++.|+ +.|...+-.+.+ .+|...-...+.++.+.
T Consensus 113 ~aLG~~~~~~~~~~~~a~~~l~~~~--~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 113 NATGHRCKKNPLYSPKIVEQSQITA--FDKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSN 186 (280)
T ss_pred HHHhcccccccccchHHHHHHHHHh--hCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcC
Confidence 555444321 12222222211 12355666666777777666 445555555554 23444444455555554
Q ss_pred C-CHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048749 306 G-KLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEY 384 (536)
Q Consensus 306 g-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~ 384 (536)
+ ....+...+..+.. .++..+-...+.++.+.|+ ..|+..+-...+.+ + .....+.++...|.. +|...
T Consensus 187 ~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~ 256 (280)
T PRK09687 187 KYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPV 256 (280)
T ss_pred CCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHH
Confidence 3 13345555555443 3466666677777777777 44555555555432 2 233566677777774 57777
Q ss_pred HHHHHhcCCCCCCcHHHHHHHHHh
Q 048749 385 LDEMEQKNGSCLPNEITFNYLLKS 408 (536)
Q Consensus 385 ~~~m~~~~~~~~p~~~~~~~ll~~ 408 (536)
+..+.+.. ||...-...+.+
T Consensus 257 L~~l~~~~----~d~~v~~~a~~a 276 (280)
T PRK09687 257 LDTLLYKF----DDNEIITKAIDK 276 (280)
T ss_pred HHHHHhhC----CChhHHHHHHHH
Confidence 77776643 454444444433
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.42 E-value=25 Score=31.74 Aligned_cols=179 Identities=9% Similarity=0.127 Sum_probs=107.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHhcCC
Q 048749 134 FDWEAAYTFFKWVSREGDYSP--GSNVFNAILDVLGRARRFVELIQVFDEMP--------DLVNEKTYGILLNRYAAAHM 203 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~~li~~~~~~g~ 203 (536)
.++++|+.-|+.+.+..|-+. .-.+.-.+|.++.+.|++++....+.++. ..-+..+.|.++.......+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 489999999999887653332 24567788999999999999999888876 23456677888887776666
Q ss_pred HHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhcCCC-----C-------CCHHHHHHHHHH
Q 048749 204 VEEAIGVFDRRKEF--GELDD---LSAFQNLLLWLCRYKHVEVAETFFESEKNEF-----G-------YDIKTMNIILNG 266 (536)
Q Consensus 204 ~~~A~~~~~~m~~~--g~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~-------~~~~~~~~li~~ 266 (536)
.+-..++|+.-.+. .-+.+ -.|-..|...|...+.+.....++.++...+ . .-...|..=|..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 55555555432211 00011 1122345666666666666666666642111 1 123456666777
Q ss_pred HHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHH-----HhcCCHhHHHH
Q 048749 267 WCVLGNVYEAKRFWKDIIKSK-CEPDSVTYATFVNAL-----TKKGKLGTALR 313 (536)
Q Consensus 267 ~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~-----~~~g~~~~a~~ 313 (536)
|....+-..-..++++...-. .-|.+.... +|+-| .+.|++++|-.
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHh
Confidence 777777777777777665422 223333332 33333 34566666643
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=86.18 E-value=33 Score=32.93 Aligned_cols=66 Identities=18% Similarity=0.171 Sum_probs=44.4
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC---CHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048749 290 PDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKP---DVVTCNCIIDALCFKKRIPEALEVLREMKN 355 (536)
Q Consensus 290 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 355 (536)
....+|..++..+.+.|.++.|...+..+...+... ++.+...-+...-..|+..+|+..++...+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344567778888888888888888888777643211 233344445556677788888888877765
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.18 E-value=14 Score=34.01 Aligned_cols=50 Identities=16% Similarity=0.177 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 048749 272 NVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEK 321 (536)
Q Consensus 272 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 321 (536)
+.++++.++..=+.-|+-||-.+++.+|+.+.+.+++.+|.++.-.|...
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 44566666665566666666666666666666666666666655555443
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=85.65 E-value=2.2 Score=24.22 Aligned_cols=27 Identities=22% Similarity=0.471 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048749 468 SYTVMIHGLYDKGRLEDALSYFHEMRL 494 (536)
Q Consensus 468 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 494 (536)
.|..+-..+...|++++|++.|++.++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345555666666666666666666654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=85.57 E-value=14 Score=36.15 Aligned_cols=110 Identities=15% Similarity=0.103 Sum_probs=70.0
Q ss_pred hHHHHHHhhcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--C
Q 048749 107 GEIEKALNQCELTLTDDLIVNVINRYRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--D 184 (536)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~ 184 (536)
..+..+|+..+-.|+...+-+++...-|+++.+++....+.+. ......+...++...-+.|++++|..+-+.|. .
T Consensus 310 ~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~e 387 (831)
T PRK15180 310 QQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNE 387 (831)
T ss_pred HHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccc
Confidence 4455566666666666666666665556777777777666554 33455666777777777788888877777776 3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048749 185 LVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFG 218 (536)
Q Consensus 185 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 218 (536)
..++.........--+.|-++++.-.|++....+
T Consensus 388 ie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 388 IEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred cCChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 3444444444444445566777777777766544
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=85.53 E-value=18 Score=29.43 Aligned_cols=62 Identities=11% Similarity=0.016 Sum_probs=34.1
Q ss_pred HHHHHHHHHHH---ccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048749 157 NVFNAILDVLG---RARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFG 218 (536)
Q Consensus 157 ~~~~~li~~~~---~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 218 (536)
.+.+.||+... ..++++++..+++.|. .+.....-..-...+...|++++|+.+|++..+.+
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 34444444432 3667777777777666 22222222223334556777777777777766644
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=85.31 E-value=7.6 Score=33.41 Aligned_cols=42 Identities=12% Similarity=0.025 Sum_probs=18.5
Q ss_pred cCCHhHHHHHHHHHHHc---CCCCCHhhHHHHHHHHHhcCChHHH
Q 048749 305 KGKLGTALRLFQAMWEK---GRKPDVVTCNCIIDALCFKKRIPEA 346 (536)
Q Consensus 305 ~g~~~~a~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~A 346 (536)
..+.+++..++....+. +-.+|+..+.+|+..|.+.|+++.|
T Consensus 153 krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 153 KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34444444444444432 1133444444444444444444444
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=85.27 E-value=31 Score=31.94 Aligned_cols=201 Identities=9% Similarity=0.005 Sum_probs=123.9
Q ss_pred CCHHHHHHHHHHHHccCCH----HHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHcCCCCCH
Q 048749 154 PGSNVFNAILDVLGRARRF----VELIQVFDEM-PDLVNEKTYGILLNRYAAAHM-----VEEAIGVFDRRKEFGELDDL 223 (536)
Q Consensus 154 ~~~~~~~~li~~~~~~g~~----~~A~~~~~~~-~~~~~~~~~~~li~~~~~~g~-----~~~A~~~~~~m~~~g~~~~~ 223 (536)
+|..+-...+.++++.|+. .++..++..+ ...++..+....+.++...+. ...+.+.+..... .++.
T Consensus 66 ~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~ 142 (280)
T PRK09687 66 KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKST 142 (280)
T ss_pred CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCCH
Confidence 3666666777777777763 4677777766 355666677666666665542 1233444433333 3466
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048749 224 SAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLG-NVYEAKRFWKDIIKSKCEPDSVTYATFVNAL 302 (536)
Q Consensus 224 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 302 (536)
.+-...+.++.+.++.+....+...+. .+|..+-...+.++.+.+ +...+...+..+.. .++..+-...+.++
T Consensus 143 ~VR~~a~~aLg~~~~~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aL 216 (280)
T PRK09687 143 NVRFAVAFALSVINDEAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGL 216 (280)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHH
Confidence 666677788888877543333333344 345566666666666653 24466666666664 45777777888888
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048749 303 TKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHL 372 (536)
Q Consensus 303 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 372 (536)
.+.|+. .|...+-...+.+ + .....+.++...|.. +|+..+..+.+. .||..+-...+.++
T Consensus 217 g~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 217 ALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 888884 4555555555542 2 345677888888885 688888888764 24666655555554
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=85.17 E-value=2.6 Score=25.36 Aligned_cols=28 Identities=21% Similarity=0.320 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048749 467 RSYTVMIHGLYDKGRLEDALSYFHEMRL 494 (536)
Q Consensus 467 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 494 (536)
.+++.|...|...|++++|..++++.+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677788888888888888888887664
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=84.99 E-value=54 Score=34.43 Aligned_cols=58 Identities=17% Similarity=0.169 Sum_probs=31.8
Q ss_pred HHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHcC
Q 048749 161 AILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHM-------VEEAIGVFDRRKEFG 218 (536)
Q Consensus 161 ~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g 218 (536)
.+|--|.|+|++++|.++..+.. .......+-..+..|+...+ -++...-|+...+..
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~ 182 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNS 182 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCC
Confidence 35566678888888888884433 22333466666676665422 234445555555443
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.99 E-value=27 Score=30.90 Aligned_cols=21 Identities=0% Similarity=0.260 Sum_probs=15.3
Q ss_pred HHhcCCHHHHHHHHHHHHhcC
Q 048749 372 LCKIKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 372 ~~~~~~~~~A~~~~~~m~~~~ 392 (536)
-+..+++.+|+++|++.....
T Consensus 164 aa~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 345678888888888876654
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=84.79 E-value=44 Score=33.25 Aligned_cols=164 Identities=13% Similarity=0.066 Sum_probs=80.4
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048749 153 SPGSNVFNAILDVLGRARRFVELIQVFDEMP-DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLL 231 (536)
Q Consensus 153 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 231 (536)
..|....-++++.++.+..+.-...+-.+|. ...+...|-.++.+|..+ ..++-..+++++.+..+ .|++.-..|..
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~ 140 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD 140 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence 3455566666677766666666666666665 445556666666666666 44555666666665542 22222223333
Q ss_pred HHHhcCCHHHHHHHHHHhcCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHh
Q 048749 232 WLCRYKHVEVAETFFESEKNEFGY------DIKTMNIILNGWCVLGNVYEAKRFWKDIIK-SKCEPDSVTYATFVNALTK 304 (536)
Q Consensus 232 ~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~~~~~~~~~li~~~~~ 304 (536)
.|-+ ++.+.+..+|..+...+-| -..+|.-++..- -.+.+..+.+...+.. .|...-.+.+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 3333 5555555555553222111 112343333311 2334444444444432 2222233344444444555
Q ss_pred cCCHhHHHHHHHHHHHc
Q 048749 305 KGKLGTALRLFQAMWEK 321 (536)
Q Consensus 305 ~g~~~~a~~~~~~m~~~ 321 (536)
..++++|++++..+.+.
T Consensus 218 ~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 218 NENWTEAIRILKHILEH 234 (711)
T ss_pred ccCHHHHHHHHHHHhhh
Confidence 55555555555555544
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=84.43 E-value=23 Score=29.68 Aligned_cols=135 Identities=16% Similarity=0.131 Sum_probs=64.9
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048749 208 IGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSK 287 (536)
Q Consensus 208 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 287 (536)
++.++.+.+.|++|+...+..+++.+.+.|++.....++.. ++-+|.......+-.+. +....+.++=-+|.+.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~---~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY---HVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh---cccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-
Confidence 34455566677777777777777777777776665555433 21222222222221111 1222233333333221
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048749 288 CEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKN 355 (536)
Q Consensus 288 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 355 (536)
=...+..+++.+...|++-+|+++.+..... +......++.+-.+.++...-..+|+-..+
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0013445556666667766666666554221 112223445555555555554445544443
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.92 E-value=8.2 Score=35.48 Aligned_cols=103 Identities=16% Similarity=0.130 Sum_probs=63.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHh
Q 048749 252 EFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSK---CEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVV 328 (536)
Q Consensus 252 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 328 (536)
|.+....+...++..-....+++.+...+-.+.... ..|+.. -.++++.| -.-+.++++.++..=++-|+-||.+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 334455555555555555677777777776665421 112211 12223322 2345667777777777778888888
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048749 329 TCNCIIDALCFKKRIPEALEVLREMKNR 356 (536)
Q Consensus 329 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 356 (536)
+++.+|+.+.+.+++.+|.++...|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8888888888888888888877776543
|
|
| >KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=83.29 E-value=6.6 Score=30.66 Aligned_cols=59 Identities=12% Similarity=0.094 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 048749 206 EAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIIL 264 (536)
Q Consensus 206 ~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 264 (536)
+..+-++.+...++.|++......+.+|.+.+++..|.++|+.++.+.++....|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 34455666667778888888888888888888888888888887766555555554444
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=83.18 E-value=13 Score=32.10 Aligned_cols=80 Identities=18% Similarity=0.115 Sum_probs=59.4
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCH
Q 048749 302 LTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNR---GCLPNVTTYNSLIKHLCKIKRM 378 (536)
Q Consensus 302 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~li~~~~~~~~~ 378 (536)
..+.|+ +.|.+.|-.+...+.--++.....|...|. ..+.+++..++....+. +-.+|+..+.+|...|.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 344555 567777878877776666666666666665 66888999988877543 3367889999999999999999
Q ss_pred HHHHH
Q 048749 379 ETVYE 383 (536)
Q Consensus 379 ~~A~~ 383 (536)
+.|.-
T Consensus 195 e~AYi 199 (203)
T PF11207_consen 195 EQAYI 199 (203)
T ss_pred hhhhh
Confidence 88863
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=82.99 E-value=12 Score=27.74 Aligned_cols=42 Identities=14% Similarity=0.175 Sum_probs=20.3
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 048749 313 RLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMK 354 (536)
Q Consensus 313 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 354 (536)
+-++.+....+.|++.+..+.+.+|.+.+++.-|.++|+..+
T Consensus 28 r~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 28 RGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333333334445555555555555555555555555555443
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=82.80 E-value=2 Score=24.89 Aligned_cols=21 Identities=24% Similarity=0.237 Sum_probs=8.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHH
Q 048749 256 DIKTMNIILNGWCVLGNVYEA 276 (536)
Q Consensus 256 ~~~~~~~li~~~~~~g~~~~A 276 (536)
+..+|+.+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 333344444444444444333
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=82.79 E-value=3.7 Score=24.61 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048749 189 KTYGILLNRYAAAHMVEEAIGVFDRRK 215 (536)
Q Consensus 189 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 215 (536)
.+++.+...|...|++++|++++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 355566666666666666666665544
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=82.69 E-value=4.3 Score=23.11 Aligned_cols=28 Identities=18% Similarity=0.260 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 048749 364 TYNSLIKHLCKIKRMETVYEYLDEMEQK 391 (536)
Q Consensus 364 ~~~~li~~~~~~~~~~~A~~~~~~m~~~ 391 (536)
+|..+...|...|++++|++.|++..+.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 4556666666666666666666666653
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=82.34 E-value=75 Score=34.05 Aligned_cols=223 Identities=11% Similarity=0.043 Sum_probs=126.1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHH-HHHhcCCHhHHHHHHHHHHHc----CCCCCHhhHHHHHHH
Q 048749 269 VLGNVYEAKRFWKDIIKSKCEPDS-------VTYATFVN-ALTKKGKLGTALRLFQAMWEK----GRKPDVVTCNCIIDA 336 (536)
Q Consensus 269 ~~g~~~~A~~~~~~m~~~g~~~~~-------~~~~~li~-~~~~~g~~~~a~~~~~~m~~~----g~~p~~~~~~~li~~ 336 (536)
...++++|..++.++...-..|+. ..|+.+-. .....|++++|.++.+..... -..+....+..+..+
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a 506 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA 506 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH
Confidence 478899999998887654222221 23444432 234578899999988877664 233455667778888
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHH---HHHHHH--HHHhcCC--HHHHHHHHHHHHhcCCC----CCCcHHHHHHH
Q 048749 337 LCFKKRIPEALEVLREMKNRGCLPNVTT---YNSLIK--HLCKIKR--METVYEYLDEMEQKNGS----CLPNEITFNYL 405 (536)
Q Consensus 337 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~li~--~~~~~~~--~~~A~~~~~~m~~~~~~----~~p~~~~~~~l 405 (536)
..-.|++++|..+.....+..-.-++.. |..+.. .+...|+ +.+....|......... ..+-..+...+
T Consensus 507 ~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~l 586 (894)
T COG2909 507 AHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQL 586 (894)
T ss_pred HHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHH
Confidence 8889999999999887765422223333 333322 2344563 23333334433332110 11233455566
Q ss_pred HHhcCCCChHHHHHH----HHHHCCCCCCHHHH--HHHHHHHHccCChhHHHHHHHHHHHCCCCC----CHHHHHHHHHH
Q 048749 406 LKSLKKPEEVPWVLE----RMERNGCKMSTDTY--NVILKLYVNWDCEDKVRHTWEEMEKKGMGP----DQRSYTVMIHG 475 (536)
Q Consensus 406 l~~~~~~~~a~~~~~----~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----~~~~~~~li~~ 475 (536)
+.++.+.+.+..-.. .-......|-...+ ..|+..+...|+.++|...++++......+ +..+-...+..
T Consensus 587 l~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~ 666 (894)
T COG2909 587 LRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKL 666 (894)
T ss_pred HHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhH
Confidence 666655544432211 11112112222222 367788888999999999999988653333 33333333433
Q ss_pred H--HhcCCHHHHHHHHHH
Q 048749 476 L--YDKGRLEDALSYFHE 491 (536)
Q Consensus 476 ~--~~~g~~~~A~~~~~~ 491 (536)
. ...|+.++|.....+
T Consensus 667 ~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 667 ILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHhcccCCHHHHHHHHHh
Confidence 3 356888777776655
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=81.86 E-value=91 Score=34.66 Aligned_cols=109 Identities=13% Similarity=0.085 Sum_probs=50.2
Q ss_pred HHHHHHHHhCCC-----CCCCHHHHHHHHHHHHc-cCCHHHHHHHHHhCC-CCCCHHHHHHHH----HHHHhc----CCH
Q 048749 140 YTFFKWVSREGD-----YSPGSNVFNAILDVLGR-ARRFVELIQVFDEMP-DLVNEKTYGILL----NRYAAA----HMV 204 (536)
Q Consensus 140 ~~~~~~~~~~~~-----~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~-~~~~~~~~~~li----~~~~~~----g~~ 204 (536)
.+.|++|.+.+. +..++..+-.-+.++.+ .++.+-...++-.+. ...+...|.... ..|... .+.
T Consensus 694 ~~AF~~~RkhRidlnii~d~~~~~Fl~nv~afl~~in~~~~l~lfl~~lk~eDvtk~~y~~~~~s~k~~~~~r~~~d~kv 773 (1265)
T KOG1920|consen 694 KEAFEVMRKHRIDLNIIFDYDPKRFLKNVPAFLKQINRVNHLELFLTELKEEDVTKTMYSSTSGSGKQVYMSRDPYDNKV 773 (1265)
T ss_pred HHHHHHHHHhccCccchhhcCHHHHHhhHHHHhccCCcHHHHHHHHhhcccchhhhhhccccccccceeEEeccchhhHH
Confidence 455777766541 12234444444445554 345555555555554 122222222111 111111 123
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHhc
Q 048749 205 EEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYK--HVEVAETFFESEK 250 (536)
Q Consensus 205 ~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~ 250 (536)
....+..+...... .|+ .-...+|.+|.+.+ .++.|+.....++
T Consensus 774 ~~vc~~vr~~l~~~-~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 774 NSVCDAVRNALERR-APD-KFNLFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred HHHHHHHHHHHhhc-Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 33333333333332 455 44456777888777 5666666665544
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.37 E-value=36 Score=29.75 Aligned_cols=162 Identities=14% Similarity=0.074 Sum_probs=87.0
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Q 048749 327 VVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLL 406 (536)
Q Consensus 327 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll 406 (536)
+.+||-+.--+...|+++.|.+.|+...+....-+-...|-=|..| -.|+++-|.+=|-..-+.++ ..|-...|-.+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~~~fYQ~D~-~DPfR~LWLYl~ 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQDDLLAFYQDDP-NDPFRSLWLYLN 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHHHHHHHHhcCC-CChHHHHHHHHH
Confidence 4567777777777888888888888877764333333333333222 34777777766665555443 345445555555
Q ss_pred HhcCCCChHH-HHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHh
Q 048749 407 KSLKKPEEVP-WVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPD-------QRSYTVMIHGLYD 478 (536)
Q Consensus 407 ~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~~~~~~li~~~~~ 478 (536)
..--+..+|. .+.++.... |..-|...|-.|.- |++ ....+++.+... -.-+ ..||--|..-+..
T Consensus 177 E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yL-gki-S~e~l~~~~~a~-a~~n~~~Ae~LTEtyFYL~K~~l~ 249 (297)
T COG4785 177 EQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYL-GKI-SEETLMERLKAD-ATDNTSLAEHLTETYFYLGKYYLS 249 (297)
T ss_pred HhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHH-hhc-cHHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHhc
Confidence 5444444444 233333322 33333333322211 111 112233333321 1111 2456667777778
Q ss_pred cCCHHHHHHHHHHHHHCCC
Q 048749 479 KGRLEDALSYFHEMRLKGM 497 (536)
Q Consensus 479 ~g~~~~A~~~~~~m~~~g~ 497 (536)
.|+.++|..+|+-.+..++
T Consensus 250 ~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 250 LGDLDEATALFKLAVANNV 268 (297)
T ss_pred cccHHHHHHHHHHHHHHhH
Confidence 8999999999988887654
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=81.32 E-value=66 Score=32.71 Aligned_cols=369 Identities=9% Similarity=0.030 Sum_probs=192.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHH-hcCCHHHHHHHH
Q 048749 135 DWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYA-AAHMVEEAIGVF 211 (536)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~-~~g~~~~A~~~~ 211 (536)
+.+.+..+++.+... ++.--.-|-.....=.+.|..+.+.++|++-. .+.+...|......+. ..|+.+...+.|
T Consensus 60 ~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~f 137 (577)
T KOG1258|consen 60 DVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLF 137 (577)
T ss_pred HHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 456677777777754 34445557777777778888889999998876 5566667766665444 457777777888
Q ss_pred HHHHHc-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH---hc------CCHHHHHHHH
Q 048749 212 DRRKEF-GEL-DDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWC---VL------GNVYEAKRFW 280 (536)
Q Consensus 212 ~~m~~~-g~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~---~~------g~~~~A~~~~ 280 (536)
+..... |.. .+...|-..|..-..+++......+++++.+- ...-++..-.-|. .. ...+++.++-
T Consensus 138 e~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei---P~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~ 214 (577)
T KOG1258|consen 138 ERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI---PLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLR 214 (577)
T ss_pred HHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh---hhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHh
Confidence 777653 322 23345666666667777888888888886432 1222222222222 11 2233333332
Q ss_pred HHHHHC---C-CCCCHHHHHHHHHHHHhc-CCHhHHHHHHH-------HHHHc-------------C-------C----C
Q 048749 281 KDIIKS---K-CEPDSVTYATFVNALTKK-GKLGTALRLFQ-------AMWEK-------------G-------R----K 324 (536)
Q Consensus 281 ~~m~~~---g-~~~~~~~~~~li~~~~~~-g~~~~a~~~~~-------~m~~~-------------g-------~----~ 324 (536)
...... + ..+....+..-+.--... +..+++..+.. ++... + + .
T Consensus 215 ~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~ 294 (577)
T KOG1258|consen 215 SDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQ 294 (577)
T ss_pred hhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccH
Confidence 222210 0 111222222222211111 11122221111 11100 0 1 1
Q ss_pred CCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHH
Q 048749 325 PDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNY 404 (536)
Q Consensus 325 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ 404 (536)
++..+|..-+..-.+.|+.+.+.-+|+...-- +..-...|--.+.-....|+.+-|..++....+-..+..|....+.+
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a 373 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHH
Confidence 13345666666666777777777777766421 11123334444444444577777777666655544334566666666
Q ss_pred HHHhc-CCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHH---HHHHHHHHCCCCCCHHHHHHHHH-----H
Q 048749 405 LLKSL-KKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVR---HTWEEMEKKGMGPDQRSYTVMIH-----G 475 (536)
Q Consensus 405 ll~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~---~~~~~m~~~g~~p~~~~~~~li~-----~ 475 (536)
.+.-+ ++..+|..+++.+...- +-....-..-+....+.|+.+.+. +++....+.. -+..+...+.- .
T Consensus 374 ~f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~--~~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 374 RFEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK--ENNGILEKLYVKFARLR 450 (577)
T ss_pred HHHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc--cCcchhHHHHHHHHHHH
Confidence 66655 46677777887777653 222233333445556677777777 4443333321 12222222222 2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCcHHH-HHHHHHHHHhh
Q 048749 476 LYDKGRLEDALSYFHEMRLKGMVPEPRT-GILVNDMNIKL 514 (536)
Q Consensus 476 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~l~~~~~~~ 514 (536)
+.-.++.+.|..++.+|.+. .|+..+ +..++..+...
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~--~~~~k~~~~~~~~~~~~~ 488 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDI--LPDCKVLYLELIRFELIQ 488 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhc--CCccHHHHHHHHHHHHhC
Confidence 33457778888888888763 444443 55555555443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=81.26 E-value=61 Score=32.29 Aligned_cols=77 Identities=12% Similarity=0.103 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC-CHhhHHHHH
Q 048749 258 KTMNIILNGWCVLGNVYEAKRFWKDIIKSKCE-PDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKP-DVVTCNCII 334 (536)
Q Consensus 258 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li 334 (536)
.+-..+..++-+.|+.++|.+.|++|.+.... -.......|+.++...+.+.++..++.+..+...+. -...|+..+
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 33344555566778888888888888765322 123456677888888888888888887765432221 234455544
|
The molecular function of this protein is uncertain. |
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=81.01 E-value=14 Score=37.11 Aligned_cols=152 Identities=20% Similarity=0.117 Sum_probs=97.1
Q ss_pred CCCHHHHHHHHHHHHhc--CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 048749 220 LDDLSAFQNLLLWLCRY--KHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYAT 297 (536)
Q Consensus 220 ~~~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 297 (536)
.|+..+..+++.-.... ..-+.+..++..|+.-..|-....|...-.+.-.|+...|...+.........-..+....
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~ 647 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVN 647 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHH
Confidence 35555555554433222 2234566677777766666666665554445567888888888877655432223344555
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048749 298 FVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLC 373 (536)
Q Consensus 298 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 373 (536)
|.....+.|...+|-.++.+..... ...+-++-.+..+|.-..+++.|++-|++..+.... +.+.-+.|...-|
T Consensus 648 la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~-~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 648 LANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTK-CPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCC-ChhhHHHHHHHHH
Confidence 6666677778888888887777654 445667777888888888999999999888766332 4555555554433
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=80.97 E-value=0.61 Score=38.15 Aligned_cols=83 Identities=8% Similarity=0.121 Sum_probs=38.8
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048749 299 VNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRM 378 (536)
Q Consensus 299 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 378 (536)
+..+.+.+.++....+++.+...+...+....+.++..|++.+..++..++++... ..-...++..|.+.|.+
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~-------~yd~~~~~~~c~~~~l~ 86 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN-------NYDLDKALRLCEKHGLY 86 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS-------SS-CTHHHHHHHTTTSH
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc-------ccCHHHHHHHHHhcchH
Confidence 44444455555555555555554444445555555555555555555555554111 11122344444455555
Q ss_pred HHHHHHHHHH
Q 048749 379 ETVYEYLDEM 388 (536)
Q Consensus 379 ~~A~~~~~~m 388 (536)
++|.-++.++
T Consensus 87 ~~a~~Ly~~~ 96 (143)
T PF00637_consen 87 EEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHHc
Confidence 5555555443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=80.88 E-value=22 Score=26.82 Aligned_cols=45 Identities=9% Similarity=0.186 Sum_probs=19.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 048749 347 LEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQK 391 (536)
Q Consensus 347 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 391 (536)
.+-++.+....+.|++.+..+.+.+|.+.+++.-|.++|+.++.+
T Consensus 30 rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 30 RRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 333333444444444444555555555555555555555444443
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.23 E-value=13 Score=32.42 Aligned_cols=74 Identities=12% Similarity=0.078 Sum_probs=41.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh---cCCCCCCHHHHHHHHH
Q 048749 191 YGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESE---KNEFGYDIKTMNIILN 265 (536)
Q Consensus 191 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~~~li~ 265 (536)
.+..+..+.+.+.+.+++...+.-.+.. +.|..+-..++..+|-.|++++|...++-. .....+...+|..+|.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 3444555666666666666666655543 444555556666666666666666555442 2233344455555554
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=80.03 E-value=67 Score=32.01 Aligned_cols=79 Identities=13% Similarity=0.178 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC-CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 048749 292 SVTYATFVNALTKKGKLGTALRLFQAMWEKG-RKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLP-NVTTYNSLI 369 (536)
Q Consensus 292 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li 369 (536)
..+-..+..++-+.|+.++|.+.+++|.+.. ......+...|+.++...+.+.++..++.+..+...+. -...|+..+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 3444556667778999999999999998752 21234467789999999999999999999876543322 245666544
Q ss_pred H
Q 048749 370 K 370 (536)
Q Consensus 370 ~ 370 (536)
-
T Consensus 339 L 339 (539)
T PF04184_consen 339 L 339 (539)
T ss_pred H
Confidence 3
|
The molecular function of this protein is uncertain. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 79.9 bits (195), Expect = 8e-16
Identities = 25/219 (11%), Positives = 61/219 (27%), Gaps = 9/219 (4%)
Query: 290 PDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEV 349
P A + K L + ++P A +
Sbjct: 90 PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149
Query: 350 L---REMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLL 406
L + + L + YN+++ + + + L ++ P+ +++ L
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG--LTPDLLSYAAAL 207
Query: 407 KSL----KKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGM 462
+ + + + LE+M + G K+ V+L V
Sbjct: 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQ 267
Query: 463 GPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEP 501
P + + ++ +Y K ++ + E
Sbjct: 268 LPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEK 306
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 75.6 bits (184), Expect = 2e-14
Identities = 25/228 (10%), Positives = 63/228 (27%), Gaps = 5/228 (2%)
Query: 175 LIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLC 234
L + P+ E+ LL ++ + +
Sbjct: 79 LEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCL 138
Query: 235 RYKHVEVAE----TFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEP 290
+ +A + + N ++ GW G E + + P
Sbjct: 139 LTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP 198
Query: 291 DSVTYATFVNALTKKGK-LGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEV 349
D ++YA + + ++ + GT R + M ++G K + ++ + +V
Sbjct: 199 DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258
Query: 350 LREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLP 397
LP + L++ + + + ++
Sbjct: 259 KPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEK 306
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 70.2 bits (170), Expect = 8e-13
Identities = 20/189 (10%), Positives = 57/189 (30%), Gaps = 6/189 (3%)
Query: 285 KSKCEPDSVTYATFVNALTKKGKLGTA---LRLFQAMWEKGRKPDVVTCNCIIDALCFKK 341
+++ F +L A L + +K + + N ++ +
Sbjct: 120 QAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQG 179
Query: 342 RIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKI-KRMETVYEYLDEMEQKNGSCLPNEI 400
E + VL +K+ G P++ +Y + ++ + + + T+ L++M Q+
Sbjct: 180 AFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFT 239
Query: 401 TFNYLLKSLKKPEEVPWVL--ERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEME 458
+ + + +T ++ +Y +
Sbjct: 240 AVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKT 299
Query: 459 KKGMGPDQR 467
+ + Q
Sbjct: 300 LQCLFEKQL 308
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 47.1 bits (110), Expect = 1e-05
Identities = 11/113 (9%), Positives = 29/113 (25%), Gaps = 6/113 (5%)
Query: 397 PNEITFNYLLKSLKK---PEEVPWVLERMERNGCKMSTDTYNVILKLYV---NWDCEDKV 450
P E LL+ + + + K + +
Sbjct: 90 PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149
Query: 451 RHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRT 503
+K Y ++ G +G ++ + ++ G+ P+ +
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.6 bits (151), Expect = 2e-10
Identities = 65/508 (12%), Positives = 132/508 (25%), Gaps = 166/508 (32%)
Query: 78 EKSEFQRYPGDEIAINVQNILKTCSVSTKGEIEKALNQCELTLTD---DLIVNVINRYRF 134
E E Q D +++ + +++ L+ D I+ +
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCK---DVQDMPKS---ILSKEEIDHIIMSKDAV-- 61
Query: 135 DWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMPDLVNEKTYGIL 194
F W S + ++FVE V Y L
Sbjct: 62 --SGTLRLF-WTLL----SKQEEM----------VQKFVEE----------VLRINYKFL 94
Query: 195 LNRYAAAHMVEEAIGVFDRRKEFGE-----LDDLSAFQNLLLWLCRYKHVEVAETFFESE 249
++ E + + E +D F + R +
Sbjct: 95 MSPIK-----TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS--RLQPYLKLRQALLEL 147
Query: 250 KNEFGYDIKTMNIILNG------WCVLGNVYEAKR---------FWKDIIKSKCEPDSVT 294
+ N++++G V +V + + FW ++ K+ P++V
Sbjct: 148 RPA-------KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL-KNCNSPETVL 199
Query: 295 ------YATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALE 348
T + + ++L + + L K L
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKL-RIHSIQAELRR----------LLKSKPYENCLL 248
Query: 349 VLREMKNR--------GC--LPNVTTYNSLI---------KHLCKIKRMETVYEYLDEME 389
VL ++N C L +TT + H+ T+ DE++
Sbjct: 249 VLLNVQNAKAWNAFNLSCKIL--LTTRFKQVTDFLSAATTTHISLDHHSMTLTP--DEVK 304
Query: 390 Q-------KNGSCLPNEI--------------------TFNYLLK------------SLK 410
LP E+ T++ SL
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364
Query: 411 --KPEEVPWVLERME--RNGCKMSTDTYNVILKLYVNW--DCEDKVRHTWEEMEKKGM-G 463
+P E + +R+ + T L L W + V ++ K +
Sbjct: 365 VLEPAEYRKMFDRLSVFPPSAHIPTIL----LSLI--WFDVIKSDVMVVVNKLHKYSLVE 418
Query: 464 PDQRSYTVMIHGLYDKGRLE-DALSYFH 490
+ T+ I +Y + +++ + H
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALH 446
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.9 bits (144), Expect = 1e-09
Identities = 76/487 (15%), Positives = 137/487 (28%), Gaps = 150/487 (30%)
Query: 2 RSRFRQLKRIYREHFQQKFKFHSQLTTQFSKLQSCNSVTSH------KTLIPI------- 48
R R +++ ++ + + + +L +L+ +V KT + +
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175
Query: 49 -----------INLQARNSEFLFLGRIET--AQLVHSLANSDEKSEFQRYPGDEIAINVQ 95
+NL+ NS L ++ Q+ + + + S + I ++
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 96 NILKTCSVSTKGEIEKALNQCELTLTDDLIVNVINRYRFDWEAAYTFFKWVSREGDYSPG 155
+LK K C L L ++
Sbjct: 236 RLLK----------SKPYENCLLVL-LNV-----------QN------AKA--------- 258
Query: 156 SNVFN------------AILDVLGRARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHM 203
N FN + D L A I + L ++ +LL
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTH--ISLDHHSMTLTPDEVKSLLLK---YLDC 313
Query: 204 V-----EEAIGVFDRR-KEFGEL--DDLSAFQNLLLWLCRYKHVEVAETFFES-EKNE-- 252
E + RR E D L+ + N C K + E+ E E
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC-DKLTTIIESSLNVLEPAEYR 372
Query: 253 --------FGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTK 304
F I+L ++ W D+IKS VN L K
Sbjct: 373 KMFDRLSVFPPSAHIPTILL---SLI---------WFDVIKSDVM-------VVVNKLHK 413
Query: 305 KGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFK--------KRIPEALEVLREMKNR 356
+ EK K ++ I L K + I + + + +
Sbjct: 414 YSLV-----------EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462
Query: 357 GCLPNVTT---YNSLIKHLCKIKRMETVYE----YLDE--MEQK---NGSCLPNEITFNY 404
+P Y+ + HL I+ E + +LD +EQK + + +
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN 522
Query: 405 LLKSLKK 411
L+ LK
Sbjct: 523 TLQQLKF 529
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 536 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.98 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.91 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.88 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.86 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.86 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.86 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.85 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.83 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.83 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.81 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.8 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.8 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.8 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.79 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.78 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.78 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.77 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.77 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.76 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.76 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.75 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.75 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.73 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.72 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.71 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.71 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.66 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.65 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.63 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.62 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.62 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.62 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.62 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.61 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.6 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.6 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.6 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.59 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.58 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.58 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.57 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.56 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.56 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.56 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.54 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.54 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.53 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.5 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.49 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.49 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.48 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.46 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.45 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.45 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.45 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.44 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.41 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.41 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.4 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.4 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.38 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.38 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.36 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.35 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.34 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.33 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.33 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.31 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.29 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.28 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.27 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.25 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.25 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.21 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.16 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.14 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.14 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.13 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.12 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.06 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.04 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.03 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.99 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.98 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.96 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.96 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.94 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.93 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.91 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.89 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.89 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.87 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.86 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.84 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.83 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.83 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.82 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.82 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.81 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.81 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.81 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.8 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.8 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.8 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.79 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.79 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.68 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.68 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.64 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.63 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.62 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.62 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.61 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.61 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.58 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.58 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.58 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.57 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.56 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.55 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.53 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.53 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.53 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.52 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.52 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.52 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.51 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.49 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.48 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.47 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.46 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.44 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.44 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.43 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.42 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.41 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.38 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.37 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.36 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.34 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.33 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.33 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.32 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.32 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.27 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.26 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.25 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.24 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.23 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.23 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.21 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.2 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.19 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.18 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.16 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.15 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.15 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.14 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.13 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.13 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.11 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.11 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.1 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.1 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.0 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.99 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.98 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.97 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.94 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.93 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.92 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.9 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.88 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.88 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.88 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.85 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.8 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.76 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.75 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.73 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.72 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.72 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.69 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.63 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.63 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.62 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.55 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.54 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.53 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.51 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.48 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.47 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.43 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.36 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.32 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.31 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.26 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.15 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.05 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.99 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.96 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.92 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.78 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.76 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.68 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.64 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.32 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.14 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.04 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.04 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.99 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 95.96 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.84 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.8 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.78 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.52 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.49 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.41 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.24 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.87 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 94.53 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.25 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.92 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.0 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 92.95 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 92.7 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 92.47 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 92.43 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 92.27 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 92.13 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 91.03 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 90.52 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 90.48 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 89.71 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 89.4 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 89.07 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 88.27 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 88.01 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 87.99 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 87.53 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 87.44 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 87.26 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 83.92 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 83.2 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 80.71 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-37 Score=317.22 Aligned_cols=446 Identities=8% Similarity=-0.028 Sum_probs=353.5
Q ss_pred hhhcCC-CCccccccCCChHHHHHHHHHHhhCCCCC-hhHHHHHHhhc-CCCCCHHHHHHH--HHhccCCHHHHHHHHHH
Q 048749 71 HSLANS-DEKSEFQRYPGDEIAINVQNILKTCSVST-KGEIEKALNQC-ELTLTDDLIVNV--INRYRFDWEAAYTFFKW 145 (536)
Q Consensus 71 ~~~~~~-~~~~~f~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~l~~~-~~~~~~~~~~~~--l~~~~~~~~~a~~~~~~ 145 (536)
..++.. .++..|+.+|.+ .+..|..++..+...+ ..++...+++. +..++...+..+ .....|+++.|+.+|+.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 142 (597)
T 2xpi_A 64 STDGSFLKERNAQNTDSLS-REDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTK 142 (597)
T ss_dssp ------------------C-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccCccCCCCCccccchHH-HHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 334443 556677777755 4666777776544332 23333333322 223343333222 22234799999999999
Q ss_pred HHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC-C-----------------CCCHHHHHHHHHHHHhcCCHHHH
Q 048749 146 VSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP-D-----------------LVNEKTYGILLNRYAAAHMVEEA 207 (536)
Q Consensus 146 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~-----------------~~~~~~~~~li~~~~~~g~~~~A 207 (536)
+... +++..+++.++.+|.+.|++++|+++|+++. . +.+..+|+.++.+|.+.|++++|
T Consensus 143 ~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 219 (597)
T 2xpi_A 143 EDLY---NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRA 219 (597)
T ss_dssp TCGG---GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred Hhcc---ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHH
Confidence 8653 5789999999999999999999999999654 2 12588999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHH--------------------------------------HHHHHhcCCHHHHHHHHHHh
Q 048749 208 IGVFDRRKEFGELDDLSAFQNL--------------------------------------LLWLCRYKHVEVAETFFESE 249 (536)
Q Consensus 208 ~~~~~~m~~~g~~~~~~~~~~l--------------------------------------l~~~~~~~~~~~a~~~~~~~ 249 (536)
+++|++|.+.+ +.+...+..+ +..|.+.|++++|.++|+++
T Consensus 220 ~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 298 (597)
T 2xpi_A 220 KECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSI 298 (597)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHh
Confidence 99999999875 3344443333 44566788999999999997
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhh
Q 048749 250 KNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVT 329 (536)
Q Consensus 250 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 329 (536)
... +++..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|..++.+|.+.|++++|.++++++.+. .+.+..+
T Consensus 299 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~ 375 (597)
T 2xpi_A 299 NGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPEKAVT 375 (597)
T ss_dssp TTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHH
T ss_pred hcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CcccHHH
Confidence 654 6899999999999999999999999999999876 457889999999999999999999999999875 3457889
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhc
Q 048749 330 CNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSL 409 (536)
Q Consensus 330 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~ 409 (536)
++.++.+|.+.|++++|.++|+++.+... .+..+|+.++.+|.+.|++++|.++|+++.+.+ ..+..+|..+...|
T Consensus 376 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~ 451 (597)
T 2xpi_A 376 WLAVGIYYLCVNKISEARRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF---QGTHLPYLFLGMQH 451 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---ccchHHHHHHHHHH
Confidence 99999999999999999999999987532 368899999999999999999999999999875 24667777777766
Q ss_pred ---CCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcC
Q 048749 410 ---KKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKK----GMGPD--QRSYTVMIHGLYDKG 480 (536)
Q Consensus 410 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~~~~~li~~~~~~g 480 (536)
++.++|.++++.+.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..+..+|.+.|
T Consensus 452 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 530 (597)
T 2xpi_A 452 MQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK 530 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhc
Confidence 66778889999998764 457899999999999999999999999999876 77788 789999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhhhhhhhhhHHHHHhhhc
Q 048749 481 RLEDALSYFHEMRLKGMVPEPRTGILVNDMNIKLKERGEQGKKVIKLTSL 530 (536)
Q Consensus 481 ~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~~~~a~~~~~~~~~~ 530 (536)
++++|.++|+++.+.+ ..+..++..+..++.+.|+.++|.+.+.++.+.
T Consensus 531 ~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 531 MYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp CHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 9999999999999864 336788999999999999999999999998654
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-33 Score=287.13 Aligned_cols=387 Identities=9% Similarity=-0.049 Sum_probs=336.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048749 133 RFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP-DLVNEKTYGILLNRYAAAHMVEEAIGVF 211 (536)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~ 211 (536)
.++++.|+.+|+.+... .|+..++..++.+|.+.|++++|..+|+++. .+++..+|+.++.+|.+.|++++|+++|
T Consensus 97 ~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 173 (597)
T 2xpi_A 97 QQQYKCAAFVGEKVLDI---TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLL 173 (597)
T ss_dssp TTCHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccCchHHHHHHHHHHhh---CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHH
Confidence 47999999999999864 5688999999999999999999999999997 5688999999999999999999999999
Q ss_pred HHHH-Hc--------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHH-------------
Q 048749 212 DRRK-EF--------------GELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNII------------- 263 (536)
Q Consensus 212 ~~m~-~~--------------g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l------------- 263 (536)
+++. .. |.+++..+|+.++.+|.+.|++++|.++|+++....+.+...+..+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~ 253 (597)
T 2xpi_A 174 GETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWD 253 (597)
T ss_dssp CSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHH
T ss_pred hccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHH
Confidence 8532 21 3344688999999999999999999999999754334444444433
Q ss_pred -------------------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 048749 264 -------------------------LNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAM 318 (536)
Q Consensus 264 -------------------------i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 318 (536)
+..|.+.|++++|.++|+++.+. +++..+|+.++.+|.+.|++++|.++|+++
T Consensus 254 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 331 (597)
T 2xpi_A 254 LVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKI 331 (597)
T ss_dssp HHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 55677899999999999998865 589999999999999999999999999999
Q ss_pred HHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCc
Q 048749 319 WEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPN 398 (536)
Q Consensus 319 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~ 398 (536)
.+.+. .+..++..++.+|.+.|++++|.++++++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.. ..+
T Consensus 332 ~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~ 406 (597)
T 2xpi_A 332 LEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD---PQF 406 (597)
T ss_dssp HHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC
T ss_pred HHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCC
Confidence 98753 378899999999999999999999999998653 3478999999999999999999999999998864 235
Q ss_pred HHHHHHHHHhc---CCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048749 399 EITFNYLLKSL---KKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHG 475 (536)
Q Consensus 399 ~~~~~~ll~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 475 (536)
..+|+.+...+ ++.++|.++++.+.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+
T Consensus 407 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 484 (597)
T 2xpi_A 407 GPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVV 484 (597)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 67888877776 66778889999988865 4578999999999999999999999999999863 3478999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHC----CCCCc--HHHHHHHHHHHHhhhhhhhhhHHHHHhhhcc
Q 048749 476 LYDKGRLEDALSYFHEMRLK----GMVPE--PRTGILVNDMNIKLKERGEQGKKVIKLTSLG 531 (536)
Q Consensus 476 ~~~~g~~~~A~~~~~~m~~~----g~~p~--~~t~~~l~~~~~~~~~~~~a~~~~~~~~~~g 531 (536)
|.+.|++++|.++|++|.+. +..|+ ..++..+..++.+.|+.++|.+.+.++.+.+
T Consensus 485 ~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 485 AFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 99999999999999999887 77888 6789999999999999999999999986653
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=267.72 Aligned_cols=206 Identities=12% Similarity=0.155 Sum_probs=137.0
Q ss_pred HHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC---------hHH
Q 048749 276 AKRFWKDIIKSKCEPDS-VTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKR---------IPE 345 (536)
Q Consensus 276 A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---------~~~ 345 (536)
+..+.+++.+.+..... ..++.+|++|++.|++++|+++|++|.+.|+.||..||++||.+|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 33444445444433322 34555666666666666666666666666666666666666666665443 566
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHC
Q 048749 346 ALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERN 425 (536)
Q Consensus 346 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~ 425 (536)
|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g--------------------------------- 135 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFG--------------------------------- 135 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---------------------------------
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------------------------------
Confidence 77777777777777777777777777777777777777777776554
Q ss_pred CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHH
Q 048749 426 GCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRTGI 505 (536)
Q Consensus 426 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 505 (536)
+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.+++++|.+.|+.|+..|+.
T Consensus 136 -~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~ 214 (501)
T 4g26_A 136 -IQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFD 214 (501)
T ss_dssp -CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHH
T ss_pred -CCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHH
Confidence 4566777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHhhh
Q 048749 506 LVNDMNIKLK 515 (536)
Q Consensus 506 ~l~~~~~~~~ 515 (536)
.+...+...+
T Consensus 215 ~l~~~F~s~~ 224 (501)
T 4g26_A 215 MIEEWFKSEV 224 (501)
T ss_dssp HHHHHHHSHH
T ss_pred HHHHHHhcCc
Confidence 7777776543
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.98 E-value=5.8e-31 Score=262.70 Aligned_cols=195 Identities=17% Similarity=0.187 Sum_probs=133.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 048749 188 EKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGW 267 (536)
Q Consensus 188 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 267 (536)
...++.+|.+|++.|++++|+++|++|.+.|+.||..||++||.+|++.+..+.+
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------------------------- 80 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------------------------- 80 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------------------------
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------------------------
Confidence 3457777888888888888888888888888888888888888887766542110
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHH
Q 048749 268 CVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEAL 347 (536)
Q Consensus 268 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 347 (536)
.+.+.++.|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.
T Consensus 81 ~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~ 160 (501)
T 4g26_A 81 SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAY 160 (501)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHH
Confidence 12234566666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhc
Q 048749 348 EVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSL 409 (536)
Q Consensus 348 ~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~ 409 (536)
++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.+ ..|+..||+.++..+
T Consensus 161 ~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g--~~ps~~T~~~l~~~F 220 (501)
T 4g26_A 161 EVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLV--RQVSKSTFDMIEEWF 220 (501)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--SSBCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhC--CCcCHHHHHHHHHHH
Confidence 666666666666666666666666666666666666666666666 666666666666655
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-25 Score=220.28 Aligned_cols=368 Identities=13% Similarity=0.046 Sum_probs=302.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048749 133 RFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGV 210 (536)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~ 210 (536)
.|+++.|++.+..+.+.. +.+...+..+...+.+.|++++|...++... .+.+..+|..+...+.+.|++++|++.
T Consensus 12 ~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 89 (388)
T 1w3b_A 12 AGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEH 89 (388)
T ss_dssp HTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 479999999999988764 5567788888899999999999999998877 777889999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 048749 211 FDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEP 290 (536)
Q Consensus 211 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 290 (536)
|+++.+.. +.+..+|..+..++.+.|++++|...|+++....+.+...+..+...+...|++++|.+.|+++.+.. +-
T Consensus 90 ~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~ 167 (388)
T 1w3b_A 90 YRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PN 167 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CC
Confidence 99998865 45567899999999999999999999998654445567788888899999999999999999998765 44
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048749 291 DSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIK 370 (536)
Q Consensus 291 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 370 (536)
+..+|..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...|++..+... .+..++..+..
T Consensus 168 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 245 (388)
T 1w3b_A 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHGNLAC 245 (388)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CCHHHHHHHHH
Confidence 67889999999999999999999999998863 23567888899999999999999999999877542 25788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhc---CCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 048749 371 HLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSL---KKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCE 447 (536)
Q Consensus 371 ~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 447 (536)
.|.+.|++++|.+.|+++.+..+ .+..++..+...+ ++.++|.+.++.+.+.. +.+..++..+...+.+.|++
T Consensus 246 ~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 321 (388)
T 1w3b_A 246 VYYEQGLIDLAIDTYRRAIELQP---HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNI 321 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCS---SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHcCCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCH
Confidence 99999999999999999988652 2334455444443 67778888888887753 56788899999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcH-HHHHHHHHHHHh
Q 048749 448 DKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEP-RTGILVNDMNIK 513 (536)
Q Consensus 448 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~l~~~~~~ 513 (536)
++|...++++.+.. +.+..+|..+..++.+.|++++|...|+++++ +.|+. ..+..+...+..
T Consensus 322 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~~~ 385 (388)
T 1w3b_A 322 EEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKE 385 (388)
T ss_dssp HHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHHHHH
Confidence 99999999988752 34577889999999999999999999999886 45653 335555544443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-24 Score=213.28 Aligned_cols=361 Identities=9% Similarity=-0.041 Sum_probs=310.3
Q ss_pred HHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 048749 162 ILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHV 239 (536)
Q Consensus 162 li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 239 (536)
+...+.+.|++++|.+.++.+. .+.+...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 4567788999999999999887 67778889999999999999999999999988765 67889999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 048749 240 EVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMW 319 (536)
Q Consensus 240 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 319 (536)
++|...|+++....+.+..+|..+..++.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+++.
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999999999654446677889999999999999999999999998875 3355677888889999999999999999999
Q ss_pred HcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcH
Q 048749 320 EKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNE 399 (536)
Q Consensus 320 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~ 399 (536)
+.. +.+..+|..+...+.+.|++++|...|+++.+.+.. +...|..+...+...|++++|...|.+.....+ .+.
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p---~~~ 237 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSP---NHA 237 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT---TCH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc---CCH
Confidence 863 335788999999999999999999999999886433 678899999999999999999999999988652 235
Q ss_pred HHHHHHHHhc---CCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048749 400 ITFNYLLKSL---KKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGL 476 (536)
Q Consensus 400 ~~~~~ll~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 476 (536)
.++..+...+ ++.++|.+.++.+.+.. +.+..+|..+...+.+.|++++|.+.++++.+.. +.+..+|..+...+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 5555555554 66778888999888864 4467899999999999999999999999998863 55788999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCC-cHHHHHHHHHHHHhhhhhhhhhHHHHHhhhccCCCC
Q 048749 477 YDKGRLEDALSYFHEMRLKGMVP-EPRTGILVNDMNIKLKERGEQGKKVIKLTSLGLKGN 535 (536)
Q Consensus 477 ~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~ 535 (536)
.+.|++++|..+++++++. .| +..++..+...+.+.|+.++|.+.+.++.+ +.|+
T Consensus 316 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~ 371 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPT 371 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTT
T ss_pred HHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCC
Confidence 9999999999999999874 45 466799999999999999999999999854 3554
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=7.9e-22 Score=196.90 Aligned_cols=332 Identities=10% Similarity=0.006 Sum_probs=257.8
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048749 139 AYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKE 216 (536)
Q Consensus 139 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 216 (536)
+...+..+.... +.+...+..+...+.+.|++++|+.+|+++. .+.+..+|..+..++...|++++|++.|+++.+
T Consensus 11 ~~~~~~~~~~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 11 VDLGTENLYFQS--MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccc--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 333444444432 4567889999999999999999999999887 667888999999999999999999999999988
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCH---HHHHHHHH------------HHHhcCCHHHHHHHHH
Q 048749 217 FGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDI---KTMNIILN------------GWCVLGNVYEAKRFWK 281 (536)
Q Consensus 217 ~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~li~------------~~~~~g~~~~A~~~~~ 281 (536)
.+ +.+..++..+..++.+.|++++|...|+.+....+.+. ..+..++. .+.+.|++++|...|+
T Consensus 89 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 167 (450)
T 2y4t_A 89 LK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLD 167 (450)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 76 55688888999999999999999999999765545555 66666644 4888999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 048749 282 DIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPN 361 (536)
Q Consensus 282 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 361 (536)
++.+.. +.+..++..+..+|.+.|++++|.++|+++.+.. +.+..++..+...|...|++++|+..|+++.+.... +
T Consensus 168 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~ 244 (450)
T 2y4t_A 168 KILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-H 244 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C
T ss_pred HHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-h
Confidence 988765 4577888889999999999999999999988752 346788888999999999999999999988765322 4
Q ss_pred HHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCC
Q 048749 362 VTTYNSL------------IKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKM 429 (536)
Q Consensus 362 ~~~~~~l------------i~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~ 429 (536)
...+..+ ...|.+.|++++|.+.|.++.+.. |+...+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~----p~~~~~--------------------------- 293 (450)
T 2y4t_A 245 KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE----PSIAEY--------------------------- 293 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----CSSHHH---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CcchHH---------------------------
Confidence 4445444 778888899999999998887754 221000
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcH-HHHHHHH
Q 048749 430 STDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEP-RTGILVN 508 (536)
Q Consensus 430 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~l~ 508 (536)
...++..+...+.+.|++++|...++++.+.. +.+...|..+..+|...|++++|...++++++ +.|+. ..+..+.
T Consensus 294 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 294 TVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 03578888999999999999999999988752 34688999999999999999999999999987 45654 4455555
Q ss_pred HH
Q 048749 509 DM 510 (536)
Q Consensus 509 ~~ 510 (536)
.+
T Consensus 371 ~~ 372 (450)
T 2y4t_A 371 KA 372 (450)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-21 Score=193.88 Aligned_cols=317 Identities=10% Similarity=0.034 Sum_probs=262.6
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048749 132 YRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIG 209 (536)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~ 209 (536)
..|+++.|+.+|+.+.+.. +.+..+|..+..+|.+.|++++|...|+++. .+.+..+|..+...|...|++++|++
T Consensus 38 ~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 115 (450)
T 2y4t_A 38 AAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAED 115 (450)
T ss_dssp HTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 3579999999999998863 5679999999999999999999999999988 67788999999999999999999999
Q ss_pred HHHHHHHcCCCCCH---HHHHHH------------HHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 048749 210 VFDRRKEFGELDDL---SAFQNL------------LLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVY 274 (536)
Q Consensus 210 ~~~~m~~~g~~~~~---~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 274 (536)
.|+++.+.. +.+. ..+..+ ...+.+.|++++|...|+.+....+.+..++..+..+|.+.|+++
T Consensus 116 ~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 194 (450)
T 2y4t_A 116 DFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPR 194 (450)
T ss_dssp HHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHH
Confidence 999999864 3333 555555 344889999999999999975555678999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHH------------HHHHHhcCC
Q 048749 275 EAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCI------------IDALCFKKR 342 (536)
Q Consensus 275 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l------------i~~~~~~g~ 342 (536)
+|..+|+++.+.. +.+..+|..+...|...|++++|+..|+++.+.. +.+...+..+ ...|.+.|+
T Consensus 195 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 272 (450)
T 2y4t_A 195 KAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGR 272 (450)
T ss_dssp GGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999998765 5678999999999999999999999999998752 2234444444 788999999
Q ss_pred hHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHH
Q 048749 343 IPEALEVLREMKNRGCLPN-----VTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPW 417 (536)
Q Consensus 343 ~~~A~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~ 417 (536)
+++|...|+++.+.. |+ ...|..+...+.+.|++++|.+.++++.+..
T Consensus 273 ~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~------------------------- 325 (450)
T 2y4t_A 273 YTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME------------------------- 325 (450)
T ss_dssp HHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-------------------------
T ss_pred HHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------------------------
Confidence 999999999998753 44 4578889999999999999999999987754
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHH------------HHhcC----
Q 048749 418 VLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPD-QRSYTVMIHG------------LYDKG---- 480 (536)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~------------~~~~g---- 480 (536)
+.+...|..+..+|...|++++|...++++.+. .|+ ...+..+..+ |...|
T Consensus 326 ----------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~ 393 (450)
T 2y4t_A 326 ----------PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRN 393 (450)
T ss_dssp ----------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTT
T ss_pred ----------cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCcc
Confidence 335778888999999999999999999999875 444 5556555532 33334
Q ss_pred -CHHHHHHHHHHH
Q 048749 481 -RLEDALSYFHEM 492 (536)
Q Consensus 481 -~~~~A~~~~~~m 492 (536)
+.+++.+.++++
T Consensus 394 ~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 394 AKKQEIIKAYRKL 406 (450)
T ss_dssp CCTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 566778888763
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.2e-21 Score=195.88 Aligned_cols=351 Identities=8% Similarity=-0.035 Sum_probs=213.1
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048749 132 YRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIG 209 (536)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~ 209 (536)
..|+++.|+..|+.+.+.. |+..+|..+..+|.+.|++++|+..|+++. .+.+..+|..+..++...|++++|+.
T Consensus 18 ~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 94 (514)
T 2gw1_A 18 RNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMF 94 (514)
T ss_dssp HTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3479999999999999864 689999999999999999999999999987 77788999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHH---------------------------------------------------------------
Q 048749 210 VFDRRKEFGELDDLSAF--------------------------------------------------------------- 226 (536)
Q Consensus 210 ~~~~m~~~g~~~~~~~~--------------------------------------------------------------- 226 (536)
.|+++.+.+ +++....
T Consensus 95 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (514)
T 2gw1_A 95 DLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKP 173 (514)
T ss_dssp HHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCC
T ss_pred HHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCH
Confidence 999998765 2222222
Q ss_pred ----------------HHHHHHHHh---cCCHHHHHHHHHHhcC-----C--C-------CCCHHHHHHHHHHHHhcCCH
Q 048749 227 ----------------QNLLLWLCR---YKHVEVAETFFESEKN-----E--F-------GYDIKTMNIILNGWCVLGNV 273 (536)
Q Consensus 227 ----------------~~ll~~~~~---~~~~~~a~~~~~~~~~-----~--~-------~~~~~~~~~li~~~~~~g~~ 273 (536)
......+.. .|+++.|..+|+.+.. . . +.+..++..+...+...|++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (514)
T 2gw1_A 174 ELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDP 253 (514)
T ss_dssp CCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCH
Confidence 222222222 5556666666655322 0 0 22334555555666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHH
Q 048749 274 YEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREM 353 (536)
Q Consensus 274 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 353 (536)
++|...|+++.+... +..++..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|...|+++
T Consensus 254 ~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 330 (514)
T 2gw1_A 254 LGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKA 330 (514)
T ss_dssp HHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 666666666655432 25555556666666666666666666655542 224445555666666666666666666666
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHH---HHhcCCCChHHHHHHHHHHCCC-CC
Q 048749 354 KNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYL---LKSLKKPEEVPWVLERMERNGC-KM 429 (536)
Q Consensus 354 ~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~l---l~~~~~~~~a~~~~~~~~~~~~-~~ 429 (536)
.+.... +...+..+...|...|++++|...++++.+..+ .+...+..+ ....++.++|...++.+.+... .+
T Consensus 331 ~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 406 (514)
T 2gw1_A 331 KELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFP---EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLD 406 (514)
T ss_dssp HHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST---TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSS
T ss_pred HHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc---cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 554322 344555555666666666666666666655431 111222222 2222444555555555443210 11
Q ss_pred C----HHHHHHHHHHHHc---cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048749 430 S----TDTYNVILKLYVN---WDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRL 494 (536)
Q Consensus 430 ~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 494 (536)
+ ...+..+...|.. .|++++|...++++.+.. +.+..+|..+...|.+.|++++|...|++..+
T Consensus 407 ~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 407 GIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp SCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 1 2355555666666 666666666666655542 22445555556666666666666666666555
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=9.5e-19 Score=168.61 Aligned_cols=323 Identities=11% Similarity=0.007 Sum_probs=229.9
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048749 155 GSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLW 232 (536)
Q Consensus 155 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 232 (536)
|+..+..+...+.+.|++++|...|+++. .+.+..+|..+...+...|++++|++.|+++.+.. +.+...+..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 34556666777777777777777777665 55566677777777777777777777777776654 3455667777777
Q ss_pred HHhcCCHHHHHHHHHHhcCCCC---CCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 048749 233 LCRYKHVEVAETFFESEKNEFG---YDIKTMNII------------LNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYAT 297 (536)
Q Consensus 233 ~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 297 (536)
+...|++++|...++......+ .+...+..+ ...+...|++++|..+++++.+.. +.+...+..
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 159 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELREL 159 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHH
Confidence 7777777777777777544333 344444444 567778888888888888887765 456777888
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH-----------
Q 048749 298 FVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYN----------- 366 (536)
Q Consensus 298 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~----------- 366 (536)
+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...|++..+.... +...+.
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~ 237 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKL 237 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHH
Confidence 8888888888888888888887753 346677888888888888888888888888765322 333332
Q ss_pred -HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 048749 367 -SLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWD 445 (536)
Q Consensus 367 -~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 445 (536)
.+...+.+.|++++|.+.++++.+.. |+...+ ....+..+...+...|
T Consensus 238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~---------------------------~~~~~~~la~~~~~~~ 286 (359)
T 3ieg_A 238 IESAEELIRDGRYTDATSKYESVMKTE----PSVAEY---------------------------TVRSKERICHCFSKDE 286 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC----CSSHHH---------------------------HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC----CCchHH---------------------------HHHHHHHHHHHHHHcc
Confidence 22556778888888888888887754 221000 1134566788899999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcH-HHHHHHHHHHHhhh
Q 048749 446 CEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEP-RTGILVNDMNIKLK 515 (536)
Q Consensus 446 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~l~~~~~~~~ 515 (536)
++++|...+++..+.. +.+..+|..+...+...|++++|.+.|++.++. .|+. .....+..+....+
T Consensus 287 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 287 KPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHHH
Confidence 9999999999998862 337889999999999999999999999999974 5653 44555555544433
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.86 E-value=8.9e-19 Score=178.93 Aligned_cols=350 Identities=9% Similarity=0.021 Sum_probs=208.9
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHH
Q 048749 131 RYRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAI 208 (536)
Q Consensus 131 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~ 208 (536)
...|+++.|++.|+.+.+.. +.++.+|..+..+|.+.|++++|++.|+++. .+.+..+|..+..++...|++++|+
T Consensus 36 ~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 113 (537)
T 3fp2_A 36 FTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAM 113 (537)
T ss_dssp HHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHH
Confidence 34579999999999999874 5689999999999999999999999999987 7788899999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhc----------------------------------------------------
Q 048749 209 GVFDRRKEFGELDDLSAFQNLLLWLCRY---------------------------------------------------- 236 (536)
Q Consensus 209 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~---------------------------------------------------- 236 (536)
+.|+.+.. .|+... ..+..+...
T Consensus 114 ~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (537)
T 3fp2_A 114 FDLSVLSL---NGDFDG--ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSN 188 (537)
T ss_dssp HHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCS
T ss_pred HHHHHHhc---CCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccc
Confidence 99964322 232111 011111111
Q ss_pred ---------------------------CCHHHHHHHHHHhcCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHH
Q 048749 237 ---------------------------KHVEVAETFFESEKNEFGYDIK-------TMNIILNGWCVLGNVYEAKRFWKD 282 (536)
Q Consensus 237 ---------------------------~~~~~a~~~~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~~~~~ 282 (536)
|++++|..+++.+....+.+.. ++..+...+...|++++|...|+.
T Consensus 189 ~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 268 (537)
T 3fp2_A 189 YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQE 268 (537)
T ss_dssp SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 2455566666554433333322 344445555566666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 048749 283 IIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNV 362 (536)
Q Consensus 283 m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 362 (536)
..+.. |+..+|..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...|+++.+.... +.
T Consensus 269 ~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~ 344 (537)
T 3fp2_A 269 SINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NV 344 (537)
T ss_dssp HHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CS
T ss_pred HHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CH
Confidence 66543 345556666666666666666666666666542 224555666666666666666666666666554322 34
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHH---HhcCCCChHHHHHHHHHHCC-----CCCCHHHH
Q 048749 363 TTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLL---KSLKKPEEVPWVLERMERNG-----CKMSTDTY 434 (536)
Q Consensus 363 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll---~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~ 434 (536)
..|..+...|...|++++|.+.+.++.+..+ .+...+..+- ...++.++|.+.++.+.+.. .......+
T Consensus 345 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 421 (537)
T 3fp2_A 345 YPYIQLACLLYKQGKFTESEAFFNETKLKFP---TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPL 421 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHH
Confidence 5566666666666666666666666665542 1122222222 22244555555555544311 11122223
Q ss_pred HHHHHHHHcc----------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048749 435 NVILKLYVNW----------DCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLK 495 (536)
Q Consensus 435 ~~li~~~~~~----------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 495 (536)
..+...+... |++++|...+++..+.. +.+...|..+...|...|++++|.+.|++.++.
T Consensus 422 ~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 422 IGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3344455555 66666666666665542 224555666666666666666666666666653
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=3e-19 Score=181.24 Aligned_cols=362 Identities=9% Similarity=-0.046 Sum_probs=284.6
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 048749 156 SNVFNAILDVLGRARRFVELIQVFDEMP-DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLC 234 (536)
Q Consensus 156 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 234 (536)
...+......+.+.|++++|+..|+++. ..|+..+|..+..++...|++++|++.|+++.+.+ +.+..++..+..++.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 4567788899999999999999999998 34789999999999999999999999999999876 567789999999999
Q ss_pred hcCCHHHHHHHHHHhcCCCCCC----------------------------------------------------------
Q 048749 235 RYKHVEVAETFFESEKNEFGYD---------------------------------------------------------- 256 (536)
Q Consensus 235 ~~~~~~~a~~~~~~~~~~~~~~---------------------------------------------------------- 256 (536)
+.|++++|...|+.+....+++
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 9999999999998853221211
Q ss_pred ---------------------HHHHHHHHHHHHh---cCCHHHHHHHHHHHHH-----CCC--------CCCHHHHHHHH
Q 048749 257 ---------------------IKTMNIILNGWCV---LGNVYEAKRFWKDIIK-----SKC--------EPDSVTYATFV 299 (536)
Q Consensus 257 ---------------------~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~--------~~~~~~~~~li 299 (536)
...+......+.. .|++++|..+|+++.+ ... +.+..++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 3333333443443 8999999999999887 311 22356778888
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 048749 300 NALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRME 379 (536)
Q Consensus 300 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 379 (536)
..+...|++++|..+++++.+... +...+..+...+...|++++|...++++.+... .+...|..+...|...|+++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHH
Confidence 889999999999999999988643 377888889999999999999999999887643 26678888899999999999
Q ss_pred HHHHHHHHHHhcCCCCCCcHHHHHHHHHhc---CCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHH
Q 048749 380 TVYEYLDEMEQKNGSCLPNEITFNYLLKSL---KKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEE 456 (536)
Q Consensus 380 ~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 456 (536)
+|...|+++.+..+ .+...+..+...+ ++.++|...++.+.+.. +.+...+..+...|.+.|++++|...+++
T Consensus 322 ~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 322 QAGKDFDKAKELDP---ENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp HHHHHHHHHHHTCS---SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCh---hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999988652 2344555555555 44566777777777643 33567888899999999999999999998
Q ss_pred HHHCCC-CCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCcHHH----HHHHHHHHHhhhhhhhhhHHH
Q 048749 457 MEKKGM-GPD----QRSYTVMIHGLYD---KGRLEDALSYFHEMRLKGMVPEPRT----GILVNDMNIKLKERGEQGKKV 524 (536)
Q Consensus 457 m~~~g~-~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t----~~~l~~~~~~~~~~~~a~~~~ 524 (536)
+.+... .++ ...|..+...+.. .|++++|...++++++. ... +..+..++.+.|+.++|.+.+
T Consensus 398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~ 472 (514)
T 2gw1_A 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL-----DPRSEQAKIGLAQMKLQQEDIDEAITLF 472 (514)
T ss_dssp HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh-----CcccHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 876421 112 3478888889999 99999999999998763 242 567788888999999999999
Q ss_pred HHhhhc
Q 048749 525 IKLTSL 530 (536)
Q Consensus 525 ~~~~~~ 530 (536)
.+..+.
T Consensus 473 ~~a~~~ 478 (514)
T 2gw1_A 473 EESADL 478 (514)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 887554
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.3e-18 Score=175.79 Aligned_cols=161 Identities=11% Similarity=-0.016 Sum_probs=76.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048749 226 FQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKK 305 (536)
Q Consensus 226 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 305 (536)
+..+...+...|++++|...++..... .|+..++..+...|...|++++|...++++.+.. +.+..+|..+...+...
T Consensus 246 ~~~~g~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 323 (537)
T 3fp2_A 246 LCYTGIFHFLKNNLLDAQVLLQESINL-HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFIL 323 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhc
Confidence 333344444555555555555553221 2234445555555555555555555555554433 22344455555555555
Q ss_pred CCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048749 306 GKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYL 385 (536)
Q Consensus 306 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~ 385 (536)
|++++|.+.++++.+.. +.+...+..+...|...|++++|..+++++.+... .+...+..+...|...|++++|.+.|
T Consensus 324 ~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~ 401 (537)
T 3fp2_A 324 QDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP-TLPEVPTFFAEILTDRGDFDTAIKQY 401 (537)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 55555555555554432 11234444555555555555555555555544321 13344444555555555555555555
Q ss_pred HHHHh
Q 048749 386 DEMEQ 390 (536)
Q Consensus 386 ~~m~~ 390 (536)
+++.+
T Consensus 402 ~~a~~ 406 (537)
T 3fp2_A 402 DIAKR 406 (537)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=9.7e-18 Score=161.48 Aligned_cols=313 Identities=10% Similarity=-0.004 Sum_probs=255.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 048749 187 NEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNG 266 (536)
Q Consensus 187 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 266 (536)
+...|..+...+...|++++|++.|+++.+.. +.+..++..+...+...|++++|...++......+.+...+..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 45678889999999999999999999999865 56788999999999999999999999999654446688999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCC---CCHHHHHHH------------HHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHH
Q 048749 267 WCVLGNVYEAKRFWKDIIKSKCE---PDSVTYATF------------VNALTKKGKLGTALRLFQAMWEKGRKPDVVTCN 331 (536)
Q Consensus 267 ~~~~g~~~~A~~~~~~m~~~g~~---~~~~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 331 (536)
|...|++++|...|+++.+.. + .+...+..+ ...+...|++++|.+.++++.+.. +.+...+.
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 158 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRE 158 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHH
Confidence 999999999999999998764 2 244455544 578889999999999999998863 34678899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCC
Q 048749 332 CIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKK 411 (536)
Q Consensus 332 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~ 411 (536)
.+...+...|++++|...++++.+... .+...+..+...|...|++++|.+.|++..+.. |+....
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~--------- 224 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD----QDHKRC--------- 224 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHH---------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----ccchHH---------
Confidence 999999999999999999999987643 378899999999999999999999999998865 322111
Q ss_pred CChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC-H----HHHHHHHHHHHhcCCHHHHH
Q 048749 412 PEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPD-Q----RSYTVMIHGLYDKGRLEDAL 486 (536)
Q Consensus 412 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~----~~~~~li~~~~~~g~~~~A~ 486 (536)
...+..+. .......+...+.+.|++++|...++++.+.. |+ . ..|..+...+...|++++|.
T Consensus 225 ----~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 225 ----FAHYKQVK------KLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp ----HHHHHHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ----HHHHHHHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 11111111 12233445777889999999999999998863 33 3 23555778899999999999
Q ss_pred HHHHHHHHCCCCC-cHHHHHHHHHHHHhhhhhhhhhHHHHHhhhc
Q 048749 487 SYFHEMRLKGMVP-EPRTGILVNDMNIKLKERGEQGKKVIKLTSL 530 (536)
Q Consensus 487 ~~~~~m~~~g~~p-~~~t~~~l~~~~~~~~~~~~a~~~~~~~~~~ 530 (536)
..+++.++. .| ++.++..+..++...|+.++|.+.+.+..+.
T Consensus 293 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 293 RICSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 999999985 34 5777999999999999999999999998544
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.8e-18 Score=161.70 Aligned_cols=197 Identities=7% Similarity=-0.070 Sum_probs=95.6
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048749 154 PGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLL 231 (536)
Q Consensus 154 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 231 (536)
.+...+..+...+...|++++|.++|+++. .+.+...+..++..+...|++++|+.+++++.+.. +.+...+..+..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 344455555555555566666666555554 33444445555555555555666665555555533 233444445555
Q ss_pred HHHhcC-CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhH
Q 048749 232 WLCRYK-HVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGT 310 (536)
Q Consensus 232 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 310 (536)
.+...| ++++|...|+......+.+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHH
Confidence 555555 55555555555333333344445555555555555555555555544432 1223334444444444455555
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHH
Q 048749 311 ALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREM 353 (536)
Q Consensus 311 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 353 (536)
|.+.+++..+.. +.+..++..+...+...|++++|...++++
T Consensus 178 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 219 (330)
T 3hym_B 178 AERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDA 219 (330)
T ss_dssp HHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 554444444431 123334444444444444444444444444
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-17 Score=159.30 Aligned_cols=275 Identities=14% Similarity=0.038 Sum_probs=229.7
Q ss_pred HhhcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHH
Q 048749 113 LNQCELTLTDDLIVNVINRYRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKT 190 (536)
Q Consensus 113 l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~ 190 (536)
+...+..++............++++.|+++|+.+.+.. +.+...+..++..+.+.|++++|..+++++. .+.+...
T Consensus 15 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 92 (330)
T 3hym_B 15 VDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVS 92 (330)
T ss_dssp -----CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH
T ss_pred HhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHH
Confidence 33334444444444444444589999999999998874 5567778888899999999999999999987 6678889
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 048749 191 YGILLNRYAAAH-MVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCV 269 (536)
Q Consensus 191 ~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 269 (536)
|..+...+...| ++++|++.|++..+.. +.+...+..+...+...|++++|...++......+.+...+..+...|..
T Consensus 93 ~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 171 (330)
T 3hym_B 93 WFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGL 171 (330)
T ss_dssp HHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 999999999999 9999999999999865 45677899999999999999999999999654445567788889999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC--------CCCCHhhHHHHHHHHHhcC
Q 048749 270 LGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKG--------RKPDVVTCNCIIDALCFKK 341 (536)
Q Consensus 270 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--------~~p~~~~~~~li~~~~~~g 341 (536)
.|++++|...+++..+.. +.+..++..+...+...|++++|...+++..+.. .+....++..+...|.+.|
T Consensus 172 ~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 250 (330)
T 3hym_B 172 TNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250 (330)
T ss_dssp TTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence 999999999999998875 5578899999999999999999999999988742 1334578899999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048749 342 RIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 342 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 392 (536)
++++|...|++..+.... +...|..+...|.+.|++++|.+.|+++.+..
T Consensus 251 ~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 251 KYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp CHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred CHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 999999999999876433 67889999999999999999999999988754
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.3e-15 Score=150.57 Aligned_cols=337 Identities=12% Similarity=0.045 Sum_probs=279.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCH
Q 048749 133 RFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGR----ARRFVELIQVFDEMPDLVNEKTYGILLNRYAA----AHMV 204 (536)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~----~g~~ 204 (536)
.++++.|+..|+.+.+.+ ++..+..+...|.. .+++++|.+.|++.....+...+..|...|.. .+++
T Consensus 56 ~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~ 131 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDK 131 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCH
T ss_pred CcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCH
Confidence 579999999999998865 68889999999998 89999999999998755678889999999988 8899
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 048749 205 EEAIGVFDRRKEFGELDDLSAFQNLLLWLCR----YKHVEVAETFFESEKNEFGYDIKTMNIILNGWCV----LGNVYEA 276 (536)
Q Consensus 205 ~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A 276 (536)
++|++.|++..+.| +...+..+...|.. .++.++|...|++.... .+...+..+...|.. .++.++|
T Consensus 132 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A 206 (490)
T 2xm6_A 132 AESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAIS 206 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHH
Confidence 99999999998865 56778888888887 78999999999985322 378889999999988 8999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCChHHHHH
Q 048749 277 KRFWKDIIKSKCEPDSVTYATFVNALTK----KGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCF----KKRIPEALE 348 (536)
Q Consensus 277 ~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~ 348 (536)
.++|++..+.| +..++..+...|.. .+++++|.++|++..+.| +...+..+...|.. .++.++|++
T Consensus 207 ~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~ 280 (490)
T 2xm6_A 207 AQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALE 280 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHH
Confidence 99999998865 56778888888876 889999999999988864 45677777777887 899999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhc---C---CCChHHH
Q 048749 349 VLREMKNRGCLPNVTTYNSLIKHLCKI-----KRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSL---K---KPEEVPW 417 (536)
Q Consensus 349 ~~~~m~~~g~~p~~~~~~~li~~~~~~-----~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~---~---~~~~a~~ 417 (536)
.|++..+.| +...+..+...|... +++++|...|++..+.+ . + ..+..+-..+ + +.++|.+
T Consensus 281 ~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~--~-~--~a~~~lg~~y~~~g~~~~~~~A~~ 352 (490)
T 2xm6_A 281 WYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG--D-A--TAQANLGAIYFRLGSEEEHKKAVE 352 (490)
T ss_dssp HHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT--C-H--HHHHHHHHHHHHSCCHHHHHHHHH
T ss_pred HHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC--C-H--HHHHHHHHHHHhCCCcccHHHHHH
Confidence 999998764 567778888888887 89999999999998876 2 2 2222222222 2 3456777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHH
Q 048749 418 VLERMERNGCKMSTDTYNVILKLYVN----WDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYD----KGRLEDALSYF 489 (536)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~ 489 (536)
.++...+.+ +...+..+...|.. .+++++|...|++..+.| +...+..|...|.. .++.++|..+|
T Consensus 353 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 426 (490)
T 2xm6_A 353 WFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWF 426 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 888877764 67888899999988 899999999999999875 67788888888888 89999999999
Q ss_pred HHHHHCCCC
Q 048749 490 HEMRLKGMV 498 (536)
Q Consensus 490 ~~m~~~g~~ 498 (536)
++..+.+..
T Consensus 427 ~~A~~~~~~ 435 (490)
T 2xm6_A 427 DTASTNDMN 435 (490)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHCCCC
Confidence 999987654
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.80 E-value=8.4e-18 Score=162.84 Aligned_cols=285 Identities=9% Similarity=-0.035 Sum_probs=167.9
Q ss_pred ccCCHHHHHH-HHHhCC--CC--C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 048749 168 RARRFVELIQ-VFDEMP--DL--V--NEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVE 240 (536)
Q Consensus 168 ~~g~~~~A~~-~~~~~~--~~--~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 240 (536)
-.|++++|.+ .|++.. .+ + +...+..+...+...|++++|+..|+++.+.. +.+..++..+..++.+.|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3467788887 777655 11 1 24557778888888888888888888888765 556777778888888888888
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH---------------HHHHHHhc
Q 048749 241 VAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYAT---------------FVNALTKK 305 (536)
Q Consensus 241 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~---------------li~~~~~~ 305 (536)
+|...|+......+.+..++..+...|...|++++|...++++.+.. +.+...+.. .+..+...
T Consensus 116 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 116 LAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 88888887544345577788888888888888888888888877654 122222211 12222355
Q ss_pred CCHhHHHHHHHHHHHcCCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048749 306 GKLGTALRLFQAMWEKGRKP-DVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEY 384 (536)
Q Consensus 306 g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~ 384 (536)
|++++|...++++.+..... +..++..+...|.+.|++++|+..|+++.+... .+..+|..+...|...|++++|...
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~ 273 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666666665542111 345555566666666666666666666554321 2355556666666666666666666
Q ss_pred HHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCC
Q 048749 385 LDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGP 464 (536)
Q Consensus 385 ~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 464 (536)
|+++.+.. +.+...+..+...|.+.|++++|...++++.+.....
T Consensus 274 ~~~al~~~-----------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 274 YRRALELQ-----------------------------------PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp HHHHHHHC-----------------------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhC-----------------------------------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 66655433 1234455556666666666666666666555421100
Q ss_pred ----------CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048749 465 ----------DQRSYTVMIHGLYDKGRLEDALSYFH 490 (536)
Q Consensus 465 ----------~~~~~~~li~~~~~~g~~~~A~~~~~ 490 (536)
...+|..+..+|...|++++|..+++
T Consensus 319 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 319 RGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp ------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred CCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 14556666666666666666655544
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-17 Score=162.22 Aligned_cols=296 Identities=12% Similarity=0.008 Sum_probs=229.3
Q ss_pred CCHHHHHH-HHHHHHhCCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHH
Q 048749 134 FDWEAAYT-FFKWVSREGDYSP--GSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAI 208 (536)
Q Consensus 134 ~~~~~a~~-~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~ 208 (536)
++++.|+. .|+.+.+...-.| +...+..+...+.+.|++++|...|+++. .+.+..+|..+...+...|++++|+
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 118 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAI 118 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 57788887 7776655432222 35668889999999999999999999987 6678889999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHH---------------HHHHHHhcCCH
Q 048749 209 GVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNI---------------ILNGWCVLGNV 273 (536)
Q Consensus 209 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---------------li~~~~~~g~~ 273 (536)
+.|+++.+.. +.+..++..+...+...|++++|...++......+.+...+.. .+..+...|++
T Consensus 119 ~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (368)
T 1fch_A 119 SALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLF 197 (368)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHH
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccH
Confidence 9999998876 5678899999999999999999999999854333333333321 23344489999
Q ss_pred HHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHH
Q 048749 274 YEAKRFWKDIIKSKCE-PDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLRE 352 (536)
Q Consensus 274 ~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 352 (536)
++|...|+++.+.... ++..++..+...+...|++++|...|+++.+.. +.+..++..+...+.+.|++++|+..|++
T Consensus 198 ~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 276 (368)
T 1fch_A 198 LEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRR 276 (368)
T ss_dssp HHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999886522 158899999999999999999999999998863 33678899999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHH
Q 048749 353 MKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTD 432 (536)
Q Consensus 353 m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~ 432 (536)
+.+... .+...+..+...|.+.|++++|...|+++.+.. |+... . .....+....
T Consensus 277 al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----~~~~~-------------------~-~~~~~~~~~~ 331 (368)
T 1fch_A 277 ALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQ----RKSRG-------------------P-RGEGGAMSEN 331 (368)
T ss_dssp HHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH----HTC--------------------------CCCCCHH
T ss_pred HHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCCC-------------------c-cccccchhhH
Confidence 987642 368889999999999999999999999987754 21000 0 0000123478
Q ss_pred HHHHHHHHHHccCChhHHHHHHHH
Q 048749 433 TYNVILKLYVNWDCEDKVRHTWEE 456 (536)
Q Consensus 433 ~~~~li~~~~~~g~~~~A~~~~~~ 456 (536)
+|..+..+|...|+.++|..++++
T Consensus 332 ~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 332 IWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHHHHhCChHhHHHhHHH
Confidence 899999999999999999988764
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.80 E-value=6.5e-15 Score=148.36 Aligned_cols=240 Identities=11% Similarity=0.099 Sum_probs=114.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHH
Q 048749 134 FDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGR----ARRFVELIQVFDEMPDLVNEKTYGILLNRYAA----AHMVE 205 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~ 205 (536)
++++.|++.|+.+.+.+ ++..+..+..+|.. .+++++|...|++.....+...+..+...|.. .++++
T Consensus 93 ~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~ 168 (490)
T 2xm6_A 93 QDYAQAVIWYKKAALKG----LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYV 168 (490)
T ss_dssp CCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHH
Confidence 45555555555554432 44444455555544 44555555555554433344455555555544 44555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 048749 206 EAIGVFDRRKEFGELDDLSAFQNLLLWLCR----YKHVEVAETFFESEKNEFGYDIKTMNIILNGWCV----LGNVYEAK 277 (536)
Q Consensus 206 ~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~ 277 (536)
+|++.|++..+.| +...+..+...|.. .++.++|..+|++... ..+...+..+...|.. .+++++|.
T Consensus 169 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~y~~g~g~~~~~~~A~ 243 (490)
T 2xm6_A 169 MAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSAT--SGDELGQLHLADMYYFGIGVTQDYTQSR 243 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 5555555555432 34444444444444 4555555555555211 1134444444444443 45555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc-----CChHHHHH
Q 048749 278 RFWKDIIKSKCEPDSVTYATFVNALTK----KGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFK-----KRIPEALE 348 (536)
Q Consensus 278 ~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-----g~~~~A~~ 348 (536)
.+|++..+.| +...+..+...|.. .++.++|.++|+...+.| +...+..+...|... +++++|+.
T Consensus 244 ~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~ 317 (490)
T 2xm6_A 244 VLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAIS 317 (490)
T ss_dssp HHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHH
Confidence 5555554432 23344444444444 455555555555554432 233444444444444 45555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhc
Q 048749 349 VLREMKNRGCLPNVTTYNSLIKHLCKIK---RMETVYEYLDEMEQK 391 (536)
Q Consensus 349 ~~~~m~~~g~~p~~~~~~~li~~~~~~~---~~~~A~~~~~~m~~~ 391 (536)
.|++..+.| +...+..+...|...| +.++|.++|++..+.
T Consensus 318 ~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~ 360 (490)
T 2xm6_A 318 WYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK 360 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC
Confidence 555554442 3334444444444433 445555555555444
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=7.1e-18 Score=163.27 Aligned_cols=266 Identities=9% Similarity=-0.058 Sum_probs=179.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 048749 187 NEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNG 266 (536)
Q Consensus 187 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 266 (536)
+...|..+...+.+.|++++|+++|+++.+.. +.+..++..+...+.+.|++++|...|++.....+.+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34557788888888888888888888888765 55677888888888888888888888887544345567788888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC-----------HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC-CCHhhHHHHH
Q 048749 267 WCVLGNVYEAKRFWKDIIKSKCEPD-----------SVTYATFVNALTKKGKLGTALRLFQAMWEKGRK-PDVVTCNCII 334 (536)
Q Consensus 267 ~~~~g~~~~A~~~~~~m~~~g~~~~-----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~li 334 (536)
|...|++++|...|+++.+.. |+ ...+..+...+...|++++|.++|+++.+.... ++..++..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 888888888888888877643 21 122333466777777777777777777775221 1466777777
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCCh
Q 048749 335 DALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEE 414 (536)
Q Consensus 335 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~ 414 (536)
..|.+.|++++|++.|+++.+... .+..+|..+..+|.+.|++++|.+.|+++.+..
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---------------------- 277 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ---------------------- 277 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----------------------
Confidence 777777777777777777765532 256677777777777777777777777776643
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCC---C--------CCHHHHHHHHHHHHhcCCHH
Q 048749 415 VPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGM---G--------PDQRSYTVMIHGLYDKGRLE 483 (536)
Q Consensus 415 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~--------p~~~~~~~li~~~~~~g~~~ 483 (536)
+.+..++..+...|.+.|++++|...|+++.+... . .+...|..+..++...|+.+
T Consensus 278 -------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 344 (365)
T 4eqf_A 278 -------------PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPE 344 (365)
T ss_dssp -------------TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHH
T ss_pred -------------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHH
Confidence 22456677777777777777777777777665310 0 02456777777777777777
Q ss_pred HHHHHHHH
Q 048749 484 DALSYFHE 491 (536)
Q Consensus 484 ~A~~~~~~ 491 (536)
.+..+.++
T Consensus 345 ~a~~~~~~ 352 (365)
T 4eqf_A 345 LFQAANLG 352 (365)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 66665543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.5e-19 Score=182.67 Aligned_cols=121 Identities=8% Similarity=0.064 Sum_probs=95.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhH
Q 048749 254 GYDIKTMNIILNGWCVLGNVYEAKRFWKDIIK---SKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTC 330 (536)
Q Consensus 254 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 330 (536)
..-..+||+||++||+.|++++|.++|++|.+ .|+.||++|||+||++||+.|++++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 33456788888888888888888888877653 467888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048749 331 NCIIDALCFKKRI-PEALEVLREMKNRGCLPNVTTYNSLIKHLCK 374 (536)
Q Consensus 331 ~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 374 (536)
+++|.++|+.|+. ++|.++|++|.+.|+.||..+|++++.++.+
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 8888888888774 6777888888888888888888877765554
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.2e-19 Score=183.01 Aligned_cols=152 Identities=14% Similarity=0.191 Sum_probs=127.3
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH---cCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 048749 290 PDSVTYATFVNALTKKGKLGTALRLFQAMWE---KGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYN 366 (536)
Q Consensus 290 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 366 (536)
--..||++||++||+.|++++|.++|++|.+ .|+.||..|||+||.+||+.|++++|.++|++|.+.|+.||++|||
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3457999999999999999999999988764 5899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCC------HHHHHHHHH
Q 048749 367 SLIKHLCKIKR-METVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMS------TDTYNVILK 439 (536)
Q Consensus 367 ~li~~~~~~~~-~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~li~ 439 (536)
+||.++++.|+ .++|.++|++|.+.| +.||..+|++++.++.+. .+.+..+.+ ..++.|+ ..+...|.+
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG--~~PD~vtY~~ll~~~eR~-~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEG--LKLQALFTAVLLSEEDRA-TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHT--CCSHHHHHHSCCCHHHHH-HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcC--CCCChhhcccccChhhHH-HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 99999999998 578999999999999 999999999888654433 222333333 2344443 455566777
Q ss_pred HHHccC
Q 048749 440 LYVNWD 445 (536)
Q Consensus 440 ~~~~~g 445 (536)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 777765
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.77 E-value=5.8e-18 Score=161.27 Aligned_cols=279 Identities=14% Similarity=0.102 Sum_probs=129.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048749 134 FDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVFDR 213 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 213 (536)
++.+.|.++++.+. ++.+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|++.++.
T Consensus 17 ~~ld~A~~fae~~~-------~~~vWs~La~A~l~~g~~~eAIdsfika---~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 17 GNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIKA---DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHcC---CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 58999999999982 3359999999999999999999999875 5666999999999999999999997777
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 048749 214 RKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSV 293 (536)
Q Consensus 214 m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 293 (536)
.++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|..+|..+ .
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~ 149 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFIN------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------S 149 (449)
T ss_dssp ------------------------CHHHHTTTTT------CC----------------CTTTHHHHHHHT---------T
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------h
Confidence 6663 4567888999999999999999988874 367789999999999999999999999976 3
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048749 294 TYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLC 373 (536)
Q Consensus 294 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 373 (536)
.|..++.++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+ ..++.-...++..|.
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Ye 218 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQ 218 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHH
Confidence 7999999999999999999999988 27899999999999999999996555442 234445667999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHH--HHhcCCCChHHHHHHHHHH-CCCCC------CHHHHHHHHHHHHcc
Q 048749 374 KIKRMETVYEYLDEMEQKNGSCLPNEITFNYL--LKSLKKPEEVPWVLERMER-NGCKM------STDTYNVILKLYVNW 444 (536)
Q Consensus 374 ~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~l--l~~~~~~~~a~~~~~~~~~-~~~~~------~~~~~~~li~~~~~~ 444 (536)
+.|++++|..+++...... ......|+.+ +.+--+++...+.++.... .+++| +...|..++-.|...
T Consensus 219 k~G~~eEai~lLe~aL~le---~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~ 295 (449)
T 1b89_A 219 DRGYFEELITMLEAALGLE---RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKY 295 (449)
T ss_dssp HTTCHHHHHHHHHHHTTST---TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHhCCc---HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999987654 2334444444 4443444444444443322 22332 456788999999999
Q ss_pred CChhHHHHH
Q 048749 445 DCEDKVRHT 453 (536)
Q Consensus 445 g~~~~A~~~ 453 (536)
+++|.|...
T Consensus 296 ~e~d~A~~t 304 (449)
T 1b89_A 296 EEYDNAIIT 304 (449)
T ss_dssp TCHHHHHHH
T ss_pred chHHHHHHH
Confidence 999988764
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-16 Score=151.24 Aligned_cols=261 Identities=11% Similarity=-0.031 Sum_probs=144.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 048749 193 ILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGN 272 (536)
Q Consensus 193 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 272 (536)
.+...+...|++++|+.+|+++.+.. +.+..++..+...+...|++++|...+++.....+.+..++..+...|...|+
T Consensus 26 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~ 104 (327)
T 3cv0_A 26 EEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 104 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCC
Confidence 33334444444444444444444332 22333444444444444444444444444322223344444455555555555
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHH--------------HH-HHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 048749 273 VYEAKRFWKDIIKSKCEPDSVTYATF--------------VN-ALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDAL 337 (536)
Q Consensus 273 ~~~A~~~~~~m~~~g~~~~~~~~~~l--------------i~-~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 337 (536)
+++|.+.++++.+.. +.+...+..+ .. .+...|++++|.+.++++.+.. +.+..++..+...|
T Consensus 105 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 182 (327)
T 3cv0_A 105 ANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLY 182 (327)
T ss_dssp HHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 555555555554432 1111111111 11 2555666777777777766652 22556666777777
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHH
Q 048749 338 CFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPW 417 (536)
Q Consensus 338 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~ 417 (536)
.+.|++++|.+.++++.+... .+..+|..+...|...|++++|.+.|+++.+..
T Consensus 183 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------------------------- 236 (327)
T 3cv0_A 183 NLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDIN------------------------- 236 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------------
T ss_pred HHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------------------------
Confidence 777777777777777665432 246667777777777777777777777766543
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCCHHHHH
Q 048749 418 VLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGP-----------DQRSYTVMIHGLYDKGRLEDAL 486 (536)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----------~~~~~~~li~~~~~~g~~~~A~ 486 (536)
+.+...+..+...|...|++++|.+.++++.+..... +...|..+..++...|++++|.
T Consensus 237 ----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 306 (327)
T 3cv0_A 237 ----------PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVE 306 (327)
T ss_dssp ----------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ----------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHH
Confidence 2245566667777777777777777777776542111 3566777777777778887777
Q ss_pred HHHHHH
Q 048749 487 SYFHEM 492 (536)
Q Consensus 487 ~~~~~m 492 (536)
.++++.
T Consensus 307 ~~~~~~ 312 (327)
T 3cv0_A 307 LTYAQN 312 (327)
T ss_dssp HHTTCC
T ss_pred HHHHHH
Confidence 776543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.7e-17 Score=156.88 Aligned_cols=276 Identities=11% Similarity=-0.041 Sum_probs=211.3
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048749 155 GSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLW 232 (536)
Q Consensus 155 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 232 (536)
+...+..+...+.+.|++++|+..|+++. .+.+..+|..+...|...|++++|++.|+++.+.. +.+..++..+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 44568888888889999999999998887 66788889999999999999999999999888765 5567888888889
Q ss_pred HHhcCCHHHHHHHHHHhcCCCCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHH
Q 048749 233 LCRYKHVEVAETFFESEKNEFGYD----------IKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCE-PDSVTYATFVNA 301 (536)
Q Consensus 233 ~~~~~~~~~a~~~~~~~~~~~~~~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~ 301 (536)
+...|++++|...+++.....+.+ ...+..+...+...|++++|..+|+++.+.... .+..++..+...
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 999999999999888853221211 233445688899999999999999999887522 268899999999
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048749 302 LTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETV 381 (536)
Q Consensus 302 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A 381 (536)
+...|++++|++.|+++.+.. +.+..++..+..+|.+.|++++|+..|+++.+... .+..+|..+..+|.+.|++++|
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP-GFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCHHHH
Confidence 999999999999999999863 34688999999999999999999999999987632 2588999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHH
Q 048749 382 YEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEE 456 (536)
Q Consensus 382 ~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 456 (536)
...|+++.+.. |+...-. .......+...|..+..++...|+.+.+..+.++
T Consensus 301 ~~~~~~al~~~----~~~~~~~-------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 301 VSNFLTALSLQ----RKSRNQQ-------------------QVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHH----HCC-------------------------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHhC----cccCCCc-------------------ccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999987754 2110000 0000012457888999999999999988887654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.76 E-value=2e-16 Score=150.22 Aligned_cols=275 Identities=10% Similarity=-0.008 Sum_probs=196.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 048749 157 NVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLC 234 (536)
Q Consensus 157 ~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 234 (536)
..+..+...+.+.|++++|..+|+++. .+.+..+|..+...+...|++++|.+.|+++.+.. +.+..++..+...+.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 345556666666777777777776665 44566666666677777777777777777666653 445666666666777
Q ss_pred hcCCHHHHHHHHHHhcCCCCCCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048749 235 RYKHVEVAETFFESEKNEFGYDIKTMNII--------------LN-GWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFV 299 (536)
Q Consensus 235 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 299 (536)
..|++++|...++......+.+...+..+ .. .+...|++++|...++++.+.. +.+..++..+.
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 179 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLG 179 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 77777777777666432222222233222 22 3778899999999999998775 45788899999
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 048749 300 NALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRME 379 (536)
Q Consensus 300 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 379 (536)
..+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...|+++.+... .+...+..+...|.+.|+++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINP-GYVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhccHH
Confidence 99999999999999999998863 34678899999999999999999999999887642 36888999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHH
Q 048749 380 TVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEME 458 (536)
Q Consensus 380 ~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 458 (536)
+|.+.|+++.+..+.. .+.. + ......+...+..+..++.+.|+.++|..++++..
T Consensus 258 ~A~~~~~~a~~~~~~~-~~~~------------~----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 258 LAAKQLVRAIYMQVGG-TTPT------------G----------EASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHHHHTTS-CC---------------------------CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHhCCcc-cccc------------c----------cchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999999987754100 0000 0 00001146788889999999999999999887543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.75 E-value=4.2e-14 Score=143.94 Aligned_cols=386 Identities=9% Similarity=0.029 Sum_probs=255.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC-CCCCHHHHHHHHHHH-HhcCCHHHHHH-
Q 048749 133 RFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP-DLVNEKTYGILLNRY-AAAHMVEEAIG- 209 (536)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~li~~~-~~~g~~~~A~~- 209 (536)
.++++.|..+|+.+.+. ++.+...|..++..+.+.|++++|..+|++.. ..|+...|...+... ...|+.++|.+
T Consensus 25 ~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~~~ 102 (530)
T 2ooe_A 25 NQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEK 102 (530)
T ss_dssp SSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHHHH
T ss_pred hCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHHHH
Confidence 46889999999998886 46678889999999999999999999999887 446777887777533 34566665554
Q ss_pred ---HHHHHHH-cCCCC-CHHHHHHHHHHHHh---------cCCHHHHHHHHHHhcCCCCCC--HHHHHHHHHHH------
Q 048749 210 ---VFDRRKE-FGELD-DLSAFQNLLLWLCR---------YKHVEVAETFFESEKNEFGYD--IKTMNIILNGW------ 267 (536)
Q Consensus 210 ---~~~~m~~-~g~~~-~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~--~~~~~~li~~~------ 267 (536)
+|++... .|..| +...|...+....+ .|+++.|..+|++... .+.+ ...|.......
T Consensus 103 ~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~ 181 (530)
T 2ooe_A 103 MAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINIH 181 (530)
T ss_dssp HHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhchh
Confidence 6766654 35443 45677777766554 6788889999888544 2221 23343322211
Q ss_pred -------HhcCCHHHHHHHHHHHH------HCC---CCCC--------HHHHHHHHHHHHhc----CCH----hHHHHHH
Q 048749 268 -------CVLGNVYEAKRFWKDII------KSK---CEPD--------SVTYATFVNALTKK----GKL----GTALRLF 315 (536)
Q Consensus 268 -------~~~g~~~~A~~~~~~m~------~~g---~~~~--------~~~~~~li~~~~~~----g~~----~~a~~~~ 315 (536)
.+.++++.|..+++.+. +.. ++|+ ...|...+...... ++. +.+..+|
T Consensus 182 ~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y 261 (530)
T 2ooe_A 182 LAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAY 261 (530)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHH
Confidence 13455677777766532 111 2343 24566655443322 222 3677788
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHh-------cCChH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048749 316 QAMWEKGRKPDVVTCNCIIDALCF-------KKRIP-------EALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETV 381 (536)
Q Consensus 316 ~~m~~~g~~p~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A 381 (536)
++.... .+.+...|..+...+.+ .|+++ +|..+|++..+.-.+-+...|..++..+.+.|++++|
T Consensus 262 ~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A 340 (530)
T 2ooe_A 262 EQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKV 340 (530)
T ss_dssp HHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHH
Confidence 888775 33466777777777765 68876 8888888887522233578888888888888999999
Q ss_pred HHHHHHHHhcCCCCCCc--HHHHHHHHHh---cCCCChHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccCChhHHHHHHH
Q 048749 382 YEYLDEMEQKNGSCLPN--EITFNYLLKS---LKKPEEVPWVLERMERNGCKMSTDTYNVILKL-YVNWDCEDKVRHTWE 455 (536)
Q Consensus 382 ~~~~~~m~~~~~~~~p~--~~~~~~ll~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~ 455 (536)
.++|+++.+.. |+ ...|...... .++.++|.++++...+.. +.+...|...... +...|+.++|..+|+
T Consensus 341 ~~~~~~al~~~----p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e 415 (530)
T 2ooe_A 341 HSIYNRLLAIE----DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFE 415 (530)
T ss_dssp HHHHHHHHHSS----SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHhCcc----ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHH
Confidence 99999888754 33 2345544443 355667778888777642 2233333332222 335788999999998
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCc--HHHHHHHHHHHHhhhhhhhhhHHHHHhh
Q 048749 456 EMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKG-MVPE--PRTGILVNDMNIKLKERGEQGKKVIKLT 528 (536)
Q Consensus 456 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~--~~t~~~l~~~~~~~~~~~~a~~~~~~~~ 528 (536)
+..+.. +-+...|..++..+.+.|+.++|..+|++.+..+ ..|+ ...+...+......|+.+.+.+...++.
T Consensus 416 ~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~ 490 (530)
T 2ooe_A 416 LGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 490 (530)
T ss_dssp HHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 877652 2357888888888888899999999999888763 2333 2246666777777788877777766654
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.6e-15 Score=141.23 Aligned_cols=272 Identities=9% Similarity=0.007 Sum_probs=165.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048749 198 YAAAHMVEEAIGVFDRRKEFGELDDL--SAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYE 275 (536)
Q Consensus 198 ~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 275 (536)
....|++..|+..+++.... .|+. .....+..+|...|+++.|...++. .-+|+..++..+...+...|+.++
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHH
Confidence 34456666666665544332 2222 2334455666666666666654432 234556666666666667777777
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 048749 276 AKRFWKDIIKSKCEP-DSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMK 354 (536)
Q Consensus 276 A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 354 (536)
|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.|+++.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 777777766655333 344555555666777777777776665 3455666666677777777777777777766
Q ss_pred HCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCH
Q 048749 355 NRGCLPNVTTY---NSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMST 431 (536)
Q Consensus 355 ~~g~~p~~~~~---~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~ 431 (536)
+.. |+.... ...+..+...|++++|..+|+++.+.. +.+.
T Consensus 158 ~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-----------------------------------p~~~ 200 (291)
T 3mkr_A 158 DQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-----------------------------------SPTL 200 (291)
T ss_dssp HHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-----------------------------------CCCH
T ss_pred hhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-----------------------------------CCcH
Confidence 543 332111 112233333466777777777766543 3467
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCCCCCcHHHHHHHHHH
Q 048749 432 DTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLED-ALSYFHEMRLKGMVPEPRTGILVNDM 510 (536)
Q Consensus 432 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g~~p~~~t~~~l~~~ 510 (536)
..++.+..++.+.|++++|...+++..+.. +-+..++..++..+...|+.++ +.++++++++ +.|+... +...
T Consensus 201 ~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~~---~~d~ 274 (291)
T 3mkr_A 201 LLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHPF---IKEY 274 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHH---HHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCChH---HHHH
Confidence 778888888888888888888888877653 2356778888888888888765 5678887776 3455433 2334
Q ss_pred HHhhhhhhhhhHH
Q 048749 511 NIKLKERGEQGKK 523 (536)
Q Consensus 511 ~~~~~~~~~a~~~ 523 (536)
..+.+.++++...
T Consensus 275 ~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 275 RAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5556666655543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.73 E-value=2.8e-17 Score=156.62 Aligned_cols=306 Identities=11% Similarity=0.099 Sum_probs=130.2
Q ss_pred HccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048749 167 GRARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFF 246 (536)
Q Consensus 167 ~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 246 (536)
-+.|++++|.+.++++.. ..+|..++.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|..++
T Consensus 14 ~~~~~ld~A~~fae~~~~---~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNE---PAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCC---hHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 367889999999999953 34999999999999999999999965 367889999999999999999999988
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC
Q 048749 247 ESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPD 326 (536)
Q Consensus 247 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 326 (536)
+...+. .++..+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|++++|..+|..+
T Consensus 85 ~~ark~-~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------- 148 (449)
T 1b89_A 85 QMARKK-ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------- 148 (449)
T ss_dssp -------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT--------
T ss_pred HHHHHh-CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------
Confidence 776554 4567889999999999999999998884 477789999999999999999999999976
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Q 048749 327 VVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLL 406 (536)
Q Consensus 327 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll 406 (536)
..|..++.++.+.|++++|++.+.++ .++.+|..++.+|...|+++.|......+. ..|+. ...++
T Consensus 149 -~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~--l~~lv 214 (449)
T 1b89_A 149 -SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADE--LEELI 214 (449)
T ss_dssp -TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHH--HHHHH
T ss_pred -hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhh--HHHHH
Confidence 47999999999999999999999988 288999999999999999999966554422 22333 22344
Q ss_pred Hhc---CCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH-CCCCC------CHHHHHHHHHHH
Q 048749 407 KSL---KKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEK-KGMGP------DQRSYTVMIHGL 476 (536)
Q Consensus 407 ~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p------~~~~~~~li~~~ 476 (536)
..| ++.+++..+++...... +-....|+-|..+|++- ++++..+-++.... -+++| +...|..+.-.|
T Consensus 215 ~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly 292 (449)
T 1b89_A 215 NYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLY 292 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 444 44445555555544433 34566777777777654 23333333332222 22233 344577777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhhhhhh
Q 048749 477 YDKGRLEDALSYFHEMRLKGMVPEPRTGILVNDMNIKLKERG 518 (536)
Q Consensus 477 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~~~ 518 (536)
...++++.|.. .|+++ .|+......+.+...+....+
T Consensus 293 ~~~~e~d~A~~---tm~~h--~~~a~~~~~f~~~~~kv~n~e 329 (449)
T 1b89_A 293 DKYEEYDNAII---TMMNH--PTDAWKEGQFKDIITKVANVE 329 (449)
T ss_dssp HHTTCHHHHHH---HHHHS--TTTTCCHHHHHHHHHHCSSTH
T ss_pred HhhchHHHHHH---HHHhC--ChhhhhhHHHHHHHhchhHHH
Confidence 88888887765 45553 344444555556666665555
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.8e-15 Score=138.00 Aligned_cols=247 Identities=13% Similarity=0.099 Sum_probs=203.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048749 133 RFDWEAAYTFFKWVSREGDYSPG--SNVFNAILDVLGRARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGV 210 (536)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 210 (536)
.|++..|+..++..... .|+ ......+..+|...|++++|+..++.. .+++..++..+...+...|+.++|++.
T Consensus 12 ~g~y~~ai~~~~~~~~~---~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~-~~~~~~a~~~la~~~~~~~~~~~A~~~ 87 (291)
T 3mkr_A 12 IGSYQQCINEAQRVKPS---SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS-SAPELQAVRMFAEYLASHSRRDAIVAE 87 (291)
T ss_dssp TTCHHHHHHHHHHSCCC---SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT-SCHHHHHHHHHHHHHHCSTTHHHHHHH
T ss_pred HHHHHHHHHHHHhcccC---CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc-CChhHHHHHHHHHHHcCCCcHHHHHHH
Confidence 37999999988776443 233 345567789999999999999888764 556778899999999999999999999
Q ss_pred HHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 048749 211 FDRRKEFGELD-DLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCE 289 (536)
Q Consensus 211 ~~~m~~~g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 289 (536)
++++...+..| +...+..+...+...|++++|...+++ +.+..++..++..|.+.|++++|.+.|+.+.+..
T Consensus 88 l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-- 160 (291)
T 3mkr_A 88 LDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD-- 160 (291)
T ss_dssp HHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--
Confidence 99999877544 566777788999999999999999987 5688899999999999999999999999998874
Q ss_pred CCHHHH---HHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 048749 290 PDSVTY---ATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYN 366 (536)
Q Consensus 290 ~~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 366 (536)
|+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...|++..+.... +..++.
T Consensus 161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~-~~~~l~ 238 (291)
T 3mkr_A 161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG-HPETLI 238 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 443211 22334444568999999999999987 4568889999999999999999999999998876433 788899
Q ss_pred HHHHHHHhcCCHHH-HHHHHHHHHhcC
Q 048749 367 SLIKHLCKIKRMET-VYEYLDEMEQKN 392 (536)
Q Consensus 367 ~li~~~~~~~~~~~-A~~~~~~m~~~~ 392 (536)
.++..+...|+.++ +.++++++.+..
T Consensus 239 ~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 239 NLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 99999999999876 678999998865
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.71 E-value=1e-13 Score=141.13 Aligned_cols=375 Identities=9% Similarity=-0.010 Sum_probs=265.8
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048749 143 FKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGEL 220 (536)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 220 (536)
|+...+.. +.|...|..++. +.+.|++++|..+|+++. .+.+...|...+..+.+.|++++|.++|++..+..
T Consensus 2 le~al~~~--P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-- 76 (530)
T 2ooe_A 2 AEKKLEEN--PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-- 76 (530)
T ss_dssp HHHHHHHC--TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--
T ss_pred hhhHhhhC--CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Confidence 34444442 558889999998 478999999999999987 67788899999999999999999999999999864
Q ss_pred CCHHHHHHHHHHH-HhcCCHHHHHH----HHHHhc--CCC-CCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHH
Q 048749 221 DDLSAFQNLLLWL-CRYKHVEVAET----FFESEK--NEF-GYDIKTMNIILNGWCV---------LGNVYEAKRFWKDI 283 (536)
Q Consensus 221 ~~~~~~~~ll~~~-~~~~~~~~a~~----~~~~~~--~~~-~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m 283 (536)
|+...|..++... ...|+.+.|.+ +|+... .+. +++...|...+....+ .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 6887777777533 35577666554 666632 122 3467788888876654 78999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHH-------------HhcCCHhHHHHHHHHHH------HcC---CCCC--------HhhHHHH
Q 048749 284 IKSKCEPDSVTYATFVNAL-------------TKKGKLGTALRLFQAMW------EKG---RKPD--------VVTCNCI 333 (536)
Q Consensus 284 ~~~g~~~~~~~~~~li~~~-------------~~~g~~~~a~~~~~~m~------~~g---~~p~--------~~~~~~l 333 (536)
++.........|....... ...++++.|..++.++. +.. ++|+ ...|...
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred HhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 8731111123443332211 12355777777776632 211 2443 2466666
Q ss_pred HHHHHhc----CCh----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhc
Q 048749 334 IDALCFK----KRI----PEALEVLREMKNRGCLPNVTTYNSLIKHLCK-------IKRME-------TVYEYLDEMEQK 391 (536)
Q Consensus 334 i~~~~~~----g~~----~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-------~~~~~-------~A~~~~~~m~~~ 391 (536)
+...... ++. ++|..+|++..... +-+...|......+.+ .|+++ +|..+|++..+.
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~ 315 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 315 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH
Confidence 6544332 233 47888999987753 2368888888888776 68887 999999999873
Q ss_pred CCCCCCcHHHHHHHH---HhcCCCChHHHHHHHHHHCCCCC-C-HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCH
Q 048749 392 NGSCLPNEITFNYLL---KSLKKPEEVPWVLERMERNGCKM-S-TDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQ 466 (536)
Q Consensus 392 ~~~~~p~~~~~~~ll---~~~~~~~~a~~~~~~~~~~~~~~-~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 466 (536)
- .+-+...|..+. ...++.++|..+++...+. .| + ...|..++..+.+.|++++|.++|++..+.. +.+.
T Consensus 316 ~--~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~ 390 (530)
T 2ooe_A 316 L--LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRH 390 (530)
T ss_dssp T--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCT
T ss_pred h--CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCch
Confidence 1 122344444444 3457788899999999885 34 3 3589999999999999999999999998762 1223
Q ss_pred HHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCC-cHHHHHHHHHHHHhhhhhhhhhHHHHHhhhc
Q 048749 467 RSYTVMIHG-LYDKGRLEDALSYFHEMRLKGMVP-EPRTGILVNDMNIKLKERGEQGKKVIKLTSL 530 (536)
Q Consensus 467 ~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~~~~~~a~~~~~~~~~~ 530 (536)
..|...... +...|+.++|..+|++.++. .| ++..+..++....+.|+.++|...+.+..+.
T Consensus 391 ~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 391 HVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 333332222 34689999999999999875 35 4666888899999999999999999997654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.7e-14 Score=141.43 Aligned_cols=340 Identities=10% Similarity=-0.031 Sum_probs=200.5
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHhCC-----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---
Q 048749 153 SPGSNVFNAILDVLGRARRFVELIQVFDEMP-----------DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFG--- 218 (536)
Q Consensus 153 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--- 218 (536)
......||.+..++...|++++|++.|++.. .+....+|+.+..+|...|++++|+..+++..+..
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 3446779999999999999999998887653 33456788999999999999999999888765421
Q ss_pred ----CCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCC
Q 048749 219 ----ELDDLSAFQNLLLWLCRY--KHVEVAETFFESEKNEFGYDIKTMNIILNGW---CVLGNVYEAKRFWKDIIKSKCE 289 (536)
Q Consensus 219 ----~~~~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g~~ 289 (536)
......++.....++... +++++|...|++.....+.+...+..+..++ ...++.++|++.+++..+.. +
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 112345666665555554 4688899988885433344566665555543 34677778888888877664 4
Q ss_pred CCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 048749 290 PDSVTYATFVNALTK----KGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTY 365 (536)
Q Consensus 290 ~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 365 (536)
.+..++..+...+.. .|++++|.+++++..... +.+..++..+...|.+.|++++|...+++..+.... +..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHH
Confidence 455666666555544 456788888888887753 335677888888888999999999999888765322 45666
Q ss_pred HHHHHHHHhc-------------------CCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCC
Q 048749 366 NSLIKHLCKI-------------------KRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNG 426 (536)
Q Consensus 366 ~~li~~~~~~-------------------~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~ 426 (536)
..+...|... +..++|...+.+..+..+
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--------------------------------- 331 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND--------------------------------- 331 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT---------------------------------
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC---------------------------------
Confidence 6665555332 123344444444444332
Q ss_pred CCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHHCC-------
Q 048749 427 CKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQR--SYTVMIH-GLYDKGRLEDALSYFHEMRLKG------- 496 (536)
Q Consensus 427 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~-~~~~~g~~~~A~~~~~~m~~~g------- 496 (536)
.+...+..+...|...|++++|.+.|++..+....|... .+..+.. .....|++++|+..|++.++..
T Consensus 332 --~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~ 409 (472)
T 4g1t_A 332 --NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE 409 (472)
T ss_dssp --TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH
T ss_pred --chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH
Confidence 122334444555555555555555555554432211110 1111111 1223455555555554443321
Q ss_pred ----------------CCCcHHHHHHHHHHHHhhhhhhhhhHHHHHhhhc
Q 048749 497 ----------------MVPEPRTGILVNDMNIKLKERGEQGKKVIKLTSL 530 (536)
Q Consensus 497 ----------------~~p~~~t~~~l~~~~~~~~~~~~a~~~~~~~~~~ 530 (536)
-+.++.++..+..++...|+.++|.+.+.+..+.
T Consensus 410 ~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 410 KMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLES 459 (472)
T ss_dssp HHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 1234567899999999999999999999997654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.66 E-value=2e-12 Score=137.44 Aligned_cols=301 Identities=14% Similarity=0.109 Sum_probs=171.6
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 048749 156 SNVFNAILDVLGRARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCR 235 (536)
Q Consensus 156 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 235 (536)
+.+|..+..++.+.|++++|.+.|.+. .|...|.-++.++.+.|++++|++.|...++.. ++....+.++.+|++
T Consensus 1105 p~vWsqLAKAql~~G~~kEAIdsYiKA---dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAK 1179 (1630)
T 1xi4_A 1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAK 1179 (1630)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhc---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHh
Confidence 445555555555555555555555544 344455555555555555555555555544432 222222235555555
Q ss_pred cCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 048749 236 YKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLF 315 (536)
Q Consensus 236 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 315 (536)
.+++++...+.. .++...|..+...|...|++++|..+|... ..|..+...|.+.|++++|.+.+
T Consensus 1180 l~rleele~fI~------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaa 1244 (1630)
T 1xi4_A 1180 TNRLAELEEFIN------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGA 1244 (1630)
T ss_pred hcCHHHHHHHHh------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHH
Confidence 555554332221 234444445555555566666666665553 24555666666666666666655
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 048749 316 QAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSC 395 (536)
Q Consensus 316 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~ 395 (536)
++. .+..+|..+-.+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++......+ .
T Consensus 1245 rKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Ler-a 1312 (1630)
T 1xi4_A 1245 RKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLER-A 1312 (1630)
T ss_pred HHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCh-h
Confidence 544 23455555555666666655555544332 23566777889999999999999999988765431 1
Q ss_pred CCcHHHHHHHHHhcCCCChHHHHHHHHHHCC-CCC------CHHHHHHHHHHHHccCChhHHHHH--------HH-----
Q 048749 396 LPNEITFNYLLKSLKKPEEVPWVLERMERNG-CKM------STDTYNVILKLYVNWDCEDKVRHT--------WE----- 455 (536)
Q Consensus 396 ~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~-~~~------~~~~~~~li~~~~~~g~~~~A~~~--------~~----- 455 (536)
.....|.-..+.+-.+.+...+.++...+.+ +++ +...|.-++-.|.+.|+++.|... |+
T Consensus 1313 H~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk 1392 (1630)
T 1xi4_A 1313 HMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFK 1392 (1630)
T ss_pred HhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHH
Confidence 2222333344444455565555555444433 222 567899999999999999999832 22
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcC---------------CHHHHHHHHH
Q 048749 456 EMEKKGMGPDQRSYTVMIHGLYDKG---------------RLEDALSYFH 490 (536)
Q Consensus 456 ~m~~~g~~p~~~~~~~li~~~~~~g---------------~~~~A~~~~~ 490 (536)
+.... ..|...|...+.-|...+ +.+++.++|.
T Consensus 1393 ~~i~k--v~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1393 DIITK--VANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred HHhcc--cccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 22211 346666766666666655 6666666665
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.65 E-value=4e-12 Score=135.20 Aligned_cols=363 Identities=11% Similarity=0.070 Sum_probs=218.7
Q ss_pred CCCCCHHHHHHHHHh--ccCCHHHHHHHHHHHHhCCC-CCCCHHHHHHHHHH---------------------------H
Q 048749 117 ELTLTDDLIVNVINR--YRFDWEAAYTFFKWVSREGD-YSPGSNVFNAILDV---------------------------L 166 (536)
Q Consensus 117 ~~~~~~~~~~~~l~~--~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~---------------------------~ 166 (536)
+...+++.+....+. ..+.+..|+++++.+.-.+. +.-+....+.++.. +
T Consensus 980 ~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Ia 1059 (1630)
T 1xi4_A 980 SETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIA 1059 (1630)
T ss_pred ccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHH
Confidence 334455544333333 45799999999999885432 33345555555543 3
Q ss_pred HccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048749 167 GRARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFF 246 (536)
Q Consensus 167 ~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 246 (536)
...|.+++|..+|++.. ......+.++. ..+++++|.++.++. -+..+|..+..++.+.|++++|...|
T Consensus 1060 i~lglyEEAf~IYkKa~--~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsY 1128 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFD--VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSY 1128 (1630)
T ss_pred HhCCCHHHHHHHHHHcC--CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 44556666666666653 22222222222 455566666665543 33556667777777777777777777
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC
Q 048749 247 ESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPD 326 (536)
Q Consensus 247 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 326 (536)
.+. .|...|..++..|.+.|++++|.+++....+.. ++....+.++.+|++.+++++...+. + .++
T Consensus 1129 iKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n 1194 (1630)
T 1xi4_A 1129 IKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPN 1194 (1630)
T ss_pred Hhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCC
Confidence 553 366666777777777777777777776655543 22222334667777777766433332 1 234
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Q 048749 327 VVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLL 406 (536)
Q Consensus 327 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll 406 (536)
...|..+...|...|++++|..+|... ..|..+..+|++.|++++|.+.+++. .+..+|..+-
T Consensus 1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA--------~n~~aWkev~ 1257 (1630)
T 1xi4_A 1195 NAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--------NSTRTWKEVC 1257 (1630)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh--------CCHHHHHHHH
Confidence 455666777777777777777777764 36777777777888888888777765 2345666665
Q ss_pred HhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHH
Q 048749 407 KSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDK--GRLED 484 (536)
Q Consensus 407 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~--g~~~~ 484 (536)
.+|...++......-- .++..+...+..++..|.+.|.+++|+.+++...... +-....|+-|...|++. ++..+
T Consensus 1258 ~acve~~Ef~LA~~cg--l~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmE 1334 (1630)
T 1xi4_A 1258 FACVDGKEFRLAQMCG--LHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMRE 1334 (1630)
T ss_pred HHHhhhhHHHHHHHHH--HhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHH
Confidence 5554444422221111 1244567778888888999999999999987776543 22345666666666654 44455
Q ss_pred HHHHHHHHHHCCCCC------cHHHHHHHHHHHHhhhhhhhhhHHHHH
Q 048749 485 ALSYFHEMRLKGMVP------EPRTGILVNDMNIKLKERGEQGKKVIK 526 (536)
Q Consensus 485 A~~~~~~m~~~g~~p------~~~t~~~l~~~~~~~~~~~~a~~~~~~ 526 (536)
++++|..-. ++.| +...+.-+.-.+.+.|+++.|...+.+
T Consensus 1335 hlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~ 1380 (1630)
T 1xi4_A 1335 HLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN 1380 (1630)
T ss_pred HHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHh
Confidence 555554322 2333 344477777888888888887755443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-13 Score=125.50 Aligned_cols=223 Identities=13% Similarity=0.082 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCC---CCCC----HHHHH
Q 048749 189 KTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNE---FGYD----IKTMN 261 (536)
Q Consensus 189 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~ 261 (536)
..|..+...+...|++++|++.|++..+.. .+..++..+..++...|++++|...++..... ..++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345556666666666666666666666555 55555555666666666666666655553111 0111 34445
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 048749 262 IILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKK 341 (536)
Q Consensus 262 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 341 (536)
.+...|...|++++|...|++..+.. |+. ..+.+.|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~------------------------------------------~~~~~~~ 119 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA------------------------------------------DILTKLR 119 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH------------------------------------------HHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh------------------------------------------HHHHHHh
Confidence 55555555555555555555554432 221 2233344
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHH
Q 048749 342 RIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLER 421 (536)
Q Consensus 342 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~ 421 (536)
++++|...++.+..... .+...+..+...+...|++++|.+.|+++.+..
T Consensus 120 ~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~----------------------------- 169 (258)
T 3uq3_A 120 NAEKELKKAEAEAYVNP-EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA----------------------------- 169 (258)
T ss_dssp HHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------------
T ss_pred HHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----------------------------
Confidence 45555555555444311 123444455555555555555555555554433
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048749 422 MERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRL 494 (536)
Q Consensus 422 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 494 (536)
+.+...+..+...|...|++++|...+++..+.. +.+...|..+...+...|++++|...+++.++
T Consensus 170 ------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 170 ------PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp ------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1133445555555555555555555555555432 22345555555555555666666555555554
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.7e-13 Score=137.22 Aligned_cols=361 Identities=11% Similarity=-0.004 Sum_probs=235.2
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhC-------CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC----------CCC
Q 048749 124 LIVNVINRYRFDWEAAYTFFKWVSRE-------GDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP----------DLV 186 (536)
Q Consensus 124 ~~~~~l~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----------~~~ 186 (536)
-.++.+....|+++.|++.|+.+.+. ...+....+|+.+..+|...|++++|...+++.. ...
T Consensus 55 n~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~ 134 (472)
T 4g1t_A 55 NLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIE 134 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchh
Confidence 34566666678999999999987542 1122346789999999999999999998888754 223
Q ss_pred CHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHhcCCCCCCHHHHH
Q 048749 187 NEKTYGILLNRYAAA--HMVEEAIGVFDRRKEFGELDDLSAFQNLLLW---LCRYKHVEVAETFFESEKNEFGYDIKTMN 261 (536)
Q Consensus 187 ~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 261 (536)
...++..+..++... +++++|++.|++..+.. +.+...+..+..+ +...++.++|.+.+++.....+.+..++.
T Consensus 135 ~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~ 213 (472)
T 4g1t_A 135 SPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKV 213 (472)
T ss_dssp CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHH
T ss_pred hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHH
Confidence 456777776666654 46999999999998865 4456666555554 34567778888888874333355777777
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 048749 262 IILNGWCV----LGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDAL 337 (536)
Q Consensus 262 ~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 337 (536)
.+...+.. .|++++|.+++++..... +.+..++..+...|...|++++|...+++..+.. +-+..++..+...|
T Consensus 214 ~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y 291 (472)
T 4g1t_A 214 LLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCY 291 (472)
T ss_dssp HHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHH
Confidence 66665554 467789999999988765 5577889999999999999999999999998863 23456666665555
Q ss_pred Hhc-------------------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCc
Q 048749 338 CFK-------------------KRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPN 398 (536)
Q Consensus 338 ~~~-------------------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~ 398 (536)
... +..++|...+++..+.... +...+..+...|...|++++|.+.|++..+.. ..+.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~--~~~~ 368 (472)
T 4g1t_A 292 RAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSKE--LTPV 368 (472)
T ss_dssp HHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC--CCHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC--CCCh
Confidence 322 2356788888887665322 45667888899999999999999999998865 2222
Q ss_pred HH--H---HHHHH-HhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 048749 399 EI--T---FNYLL-KSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVM 472 (536)
Q Consensus 399 ~~--~---~~~ll-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 472 (536)
.. . +..+. ...++.++|...+++..+.. |+..... +..+.+..+++...+.. +.+..+|..+
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~---------~~~~~l~~~~~~~l~~~-p~~~~~~~~L 436 (472)
T 4g1t_A 369 AKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREKE---------KMKDKLQKIAKMRLSKN-GADSEALHVL 436 (472)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHHH---------HHHHHHHHHHHHHHHHC-C-CTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHH---------HHHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 21 1 11111 12244567777777777643 3322211 12234455555555542 4467889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC-CCCcHH
Q 048749 473 IHGLYDKGRLEDALSYFHEMRLKG-MVPEPR 502 (536)
Q Consensus 473 i~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~ 502 (536)
...|...|++++|++.|++.++.| ..|+..
T Consensus 437 G~~~~~~g~~~~A~~~y~kALe~~~~~p~a~ 467 (472)
T 4g1t_A 437 AFLQELNEKMQQADEDSERGLESGSLIPSAS 467 (472)
T ss_dssp HHHHHHHHHCC--------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcHh
Confidence 999999999999999999998864 344443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.2e-14 Score=126.38 Aligned_cols=207 Identities=10% Similarity=-0.066 Sum_probs=105.9
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048749 155 GSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLW 232 (536)
Q Consensus 155 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 232 (536)
+...+..+...+.+.|++++|...|++.. .+.+...|..+...+.+.|++++|+..|++..+.. +.+...+..+...
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEA 82 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 44445555555555555555555555443 34445555555555555555555555555555443 2334444444444
Q ss_pred HHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 048749 233 LCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTAL 312 (536)
Q Consensus 233 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 312 (536)
+.+.+. .. .. .+...|++++|+..|++..+.. +-+...|..+..++...|++++|+
T Consensus 83 ~~~~~~-----------~~---~~---------~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~ 138 (217)
T 2pl2_A 83 YVALYR-----------QA---ED---------RERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAE 138 (217)
T ss_dssp HHHHHH-----------TC---SS---------HHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhhh-----------hh---hh---------hcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHH
Confidence 443300 00 00 0001166677777776666553 334566666666677777777777
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048749 313 RLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEME 389 (536)
Q Consensus 313 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 389 (536)
..|++..+.. .+...+..+..+|...|++++|+..|++..+.... +...+..+...+.+.|++++|.+.|++..
T Consensus 139 ~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 139 ASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 7777766665 46666666777777777777777777766654322 45666666666777777777777666554
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.62 E-value=5.1e-14 Score=125.12 Aligned_cols=197 Identities=14% Similarity=0.001 Sum_probs=143.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048749 220 LDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFV 299 (536)
Q Consensus 220 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 299 (536)
+++...+..+...+.+.|++++|...|++.....+.+...+..+...+.+.|++++|+..|++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 34556666777777777777777777777555556677777777778888888888888888777665 44567777777
Q ss_pred HHHHhc-----------CCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048749 300 NALTKK-----------GKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSL 368 (536)
Q Consensus 300 ~~~~~~-----------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 368 (536)
..+... |++++|+..|++..+.. +-+...+..+..++...|++++|+..|++..+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 778877 99999999999999863 2357788899999999999999999999998877 688999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhc---CCCChHHHHHHHHH
Q 048749 369 IKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSL---KKPEEVPWVLERME 423 (536)
Q Consensus 369 i~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~---~~~~~a~~~~~~~~ 423 (536)
..+|...|++++|...|++..+..+ .+...+..+-..+ ++.++|...++...
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAP---KDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHST---TCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999998752 2344454444444 55666766665543
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-13 Score=125.48 Aligned_cols=224 Identities=14% Similarity=0.075 Sum_probs=171.5
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCC----HHHHH
Q 048749 156 SNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGE--LDD----LSAFQ 227 (536)
Q Consensus 156 ~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~----~~~~~ 227 (536)
...+..+...+.+.|++++|...|++.. . .+..+|..+...+...|++++|++.|++..+... .++ ..++.
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 4567777888888888888888888776 5 6777888888888888888888888888776431 112 46777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048749 228 NLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGK 307 (536)
Q Consensus 228 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 307 (536)
.+...+...|++++|...|+..... .|+. ..+.+.|++++|...++.+.... +.+...+..+...+...|+
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTE-HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc-Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcC
Confidence 7888888888888888888874321 2332 34566788888888888887754 3355677888888888999
Q ss_pred HhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048749 308 LGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDE 387 (536)
Q Consensus 308 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~ 387 (536)
+++|...+++..+.. +.+..++..+...|.+.|++++|...|++..+... .+...|..+...|.+.|++++|.+.|++
T Consensus 155 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999998888763 33677888888889999999999999998877542 2577888888889999999999999988
Q ss_pred HHhc
Q 048749 388 MEQK 391 (536)
Q Consensus 388 m~~~ 391 (536)
..+.
T Consensus 233 a~~~ 236 (258)
T 3uq3_A 233 ARTK 236 (258)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8764
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.61 E-value=4.4e-13 Score=122.03 Aligned_cols=198 Identities=9% Similarity=-0.029 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 048749 156 SNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWL 233 (536)
Q Consensus 156 ~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 233 (536)
...+..+...+...|++++|.+.|+++. .+.+..+|..+...+...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 4456666666777777777777777665 44556666777777777777777777777666553 33455566666666
Q ss_pred HhcCCHHHHHHHHHHhcC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 048749 234 CRYKHVEVAETFFESEKN--EFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTA 311 (536)
Q Consensus 234 ~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 311 (536)
...|++++|..++++... ..+.+...+..+...|...|++++|...+++..+.. +.+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 666666666666666433 223344555555555666666666666666555443 22345555555555555555555
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048749 312 LRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNR 356 (536)
Q Consensus 312 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 356 (536)
...++.+.+.. +.+...+..+...+.+.|+.++|.++++++.+.
T Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 55555554431 223444445555555555555555555555443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.8e-13 Score=118.67 Aligned_cols=203 Identities=10% Similarity=0.008 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 048749 188 EKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGW 267 (536)
Q Consensus 188 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 267 (536)
...|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|...++......+.+..++..+...|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3445555555555566666666665555543 334555555555566666666666666554332344555666666666
Q ss_pred Hhc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHH
Q 048749 268 CVL-GNVYEAKRFWKDIIKSKCEPD-SVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPE 345 (536)
Q Consensus 268 ~~~-g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 345 (536)
... |++++|...++++.+.+..|+ ...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHH
Confidence 666 666666666666665222222 4556666666666777777777776666642 2245566666667777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048749 346 ALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 346 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 392 (536)
|..+++++.+.....+...+..+...+...|+.++|..+++.+.+..
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 77777766554321355566666666667777777777777766543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.60 E-value=4.6e-13 Score=121.88 Aligned_cols=202 Identities=12% Similarity=0.016 Sum_probs=176.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 048749 188 EKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGW 267 (536)
Q Consensus 188 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 267 (536)
...|..+...+...|++++|++.|+++.+.. +.+..++..+...+...|++++|...+++.....+.+..++..+...|
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence 5678889999999999999999999998875 567889999999999999999999999996544466888999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHH
Q 048749 268 CVLGNVYEAKRFWKDIIKSKCEP-DSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEA 346 (536)
Q Consensus 268 ~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 346 (536)
...|++++|.++++++.+.+..| +...+..+...+...|++++|.+.++++.+.. +.+...+..+...|...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998733344 56778888999999999999999999998863 33678889999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048749 347 LEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 347 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 392 (536)
...++++.+... .+...+..+...+...|+.++|.+.++++.+..
T Consensus 195 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999987543 467888889999999999999999999998865
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.1e-13 Score=119.64 Aligned_cols=201 Identities=12% Similarity=0.054 Sum_probs=171.7
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048749 154 PGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLL 231 (536)
Q Consensus 154 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 231 (536)
.+..++..+...+...|++++|.+.|+++. .+.+...|..+...+...|++++|++.|+++.+.. +.+..++..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 457788889999999999999999999877 66778899999999999999999999999998865 557788889999
Q ss_pred HHHhc-CCHHHHHHHHHHhcC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048749 232 WLCRY-KHVEVAETFFESEKN--EFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKL 308 (536)
Q Consensus 232 ~~~~~-~~~~~a~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 308 (536)
.+... |++++|...++.... ..+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 99999 999999999999654 334457788999999999999999999999998765 44678889999999999999
Q ss_pred hHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048749 309 GTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNR 356 (536)
Q Consensus 309 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 356 (536)
++|...++++.+.....+...+..+...+...|+.++|..+++.+.+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 999999999888633246777888888889999999999999998754
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=4.1e-12 Score=117.17 Aligned_cols=225 Identities=10% Similarity=0.031 Sum_probs=187.0
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 048749 154 PGSNVFNAILDVLGRARRFVELIQVFDEMPDLVNEKTYGILLNRYAA----AHMVEEAIGVFDRRKEFGELDDLSAFQNL 229 (536)
Q Consensus 154 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 229 (536)
.++.++..+...|.+.|++++|...|++...+.+..++..+...|.. .+++++|++.|++..+.+ +...+..+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 36778888888888999999999999887755677788888888888 899999999999988865 67788888
Q ss_pred HHHHHh----cCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048749 230 LLWLCR----YKHVEVAETFFESEKNEFGYDIKTMNIILNGWCV----LGNVYEAKRFWKDIIKSKCEPDSVTYATFVNA 301 (536)
Q Consensus 230 l~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 301 (536)
...+.. .+++++|...|++.... .+...+..+...|.. .+++++|...|++..+.+ +...+..+...
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 888888 89999999999884321 277888888888888 899999999999988865 56677778888
Q ss_pred HHh----cCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048749 302 LTK----KGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCF----KKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLC 373 (536)
Q Consensus 302 ~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 373 (536)
|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+...|.
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~ 229 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQY 229 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHH
Confidence 887 899999999999988864 46677788888888 899999999999988764 3677778888888
Q ss_pred h----cCCHHHHHHHHHHHHhcC
Q 048749 374 K----IKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 374 ~----~~~~~~A~~~~~~m~~~~ 392 (536)
+ .+++++|.+.|++..+.+
T Consensus 230 ~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cCCCcccCHHHHHHHHHHHHHcC
Confidence 8 889999999999988876
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=6.1e-12 Score=116.01 Aligned_cols=125 Identities=14% Similarity=0.137 Sum_probs=56.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHh-cCCCCCCHHHHH
Q 048749 187 NEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCR----YKHVEVAETFFESE-KNEFGYDIKTMN 261 (536)
Q Consensus 187 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~-~~~~~~~~~~~~ 261 (536)
+..++..+...+...|++++|++.|++..+ +.+..++..+...+.. .+++++|...|++. ..+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 344455555555555555555555555554 2233344444444444 44444444444442 111 334444
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHH
Q 048749 262 IILNGWCV----LGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTK----KGKLGTALRLFQAMWE 320 (536)
Q Consensus 262 ~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~ 320 (536)
.+...|.. .+++++|...|++..+.+ +..++..+...|.. .+++++|++.|++..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~ 142 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD 142 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh
Confidence 44444444 444444444444444332 33334444444444 4444444444444443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.5e-13 Score=124.25 Aligned_cols=198 Identities=15% Similarity=0.105 Sum_probs=91.0
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048749 155 GSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLW 232 (536)
Q Consensus 155 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 232 (536)
....|..+...+.+.|++++|...|+++. .+.+...+..+...+...|++++|++.|+++.+.. +.+..++..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 34455555556666666666666666554 34455556666666666666666666666655543 3344455555555
Q ss_pred HHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 048749 233 LCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTAL 312 (536)
Q Consensus 233 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 312 (536)
+...|++++|...+++.....+.+...+..+...+.+.|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHH
Confidence 5555555555555555332223344455555555555555555555555554432 223444445555555555555555
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048749 313 RLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKN 355 (536)
Q Consensus 313 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 355 (536)
+.++++.+.. +.+..++..+..+|.+.|++++|.+.++++.+
T Consensus 180 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 180 SQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 5555544431 12344444445555555555555555555444
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.5e-13 Score=123.45 Aligned_cols=233 Identities=11% Similarity=-0.016 Sum_probs=130.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHH
Q 048749 158 VFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDD--LSAFQNLLLWL 233 (536)
Q Consensus 158 ~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~ll~~~ 233 (536)
.+......+.+.|++++|+..|++.. .+.+...|..+...+...|++++|++.|++..+.+..++ ..+|..+...+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 34445555566666666666666554 333444556666666666666666666666655221111 22355566666
Q ss_pred HhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 048749 234 CRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALR 313 (536)
Q Consensus 234 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 313 (536)
...|++++|...|+......+.+..++..+...|...|++++|...|++..+.. +.+...|..+...+...+++++|.+
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666433334455566666666666666666666666655542 3344555555523333446666666
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHhcCC---hHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcCCHHHHHH
Q 048749 314 LFQAMWEKGRKPDVVTCNCIIDALCFKKR---IPEALEVLREMKNRG-CLPN------VTTYNSLIKHLCKIKRMETVYE 383 (536)
Q Consensus 314 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~------~~~~~~li~~~~~~~~~~~A~~ 383 (536)
.|+++.+.. +.+...+..+...+...|+ +++|...++++.+.. -.|+ ..+|..+...|.+.|++++|.+
T Consensus 164 ~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 164 SFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 666666642 2234555555566666665 666666666654321 0122 2456666667777777777777
Q ss_pred HHHHHHhcC
Q 048749 384 YLDEMEQKN 392 (536)
Q Consensus 384 ~~~~m~~~~ 392 (536)
.|+++.+..
T Consensus 243 ~~~~al~~~ 251 (272)
T 3u4t_A 243 AWKNILALD 251 (272)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhcC
Confidence 777776654
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=6.9e-14 Score=129.10 Aligned_cols=244 Identities=10% Similarity=-0.074 Sum_probs=174.7
Q ss_pred CCHHHHHHHHHHHHhCCCCC--CCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048749 134 FDWEAAYTFFKWVSREGDYS--PGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIG 209 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~ 209 (536)
++++.|+..|+.+.+..... .+..++..+...+...|++++|...|+++. .+.+..+|..+...+...|++++|++
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~ 98 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE 98 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence 58899999999988763211 246778888999999999999999999887 66778899999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 048749 210 VFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCE 289 (536)
Q Consensus 210 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 289 (536)
.|++..+.. +.+..++..+...+.+.|++++|...++......+.+. .....+..+...|++++|...+++..... +
T Consensus 99 ~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~ 175 (275)
T 1xnf_A 99 AFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP-FRSLWLYLAEQKLDEKQAKEVLKQHFEKS-D 175 (275)
T ss_dssp HHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHHCHHHHHHHHHHHHHHS-C
T ss_pred HHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-C
Confidence 999988865 44677888888888889999999988888543323333 33344445566788888888887776653 3
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC---CHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 048749 290 PDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKP---DVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYN 366 (536)
Q Consensus 290 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 366 (536)
++...+. ++..+...++.++|.+.++......... +..++..+...|.+.|++++|...|+++.+.. |+. +.
T Consensus 176 ~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~--~~ 250 (275)
T 1xnf_A 176 KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN--FV 250 (275)
T ss_dssp CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--CH
T ss_pred cchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--HH
Confidence 3434443 6666777777888888887776542110 14667778888888888888888888887653 321 22
Q ss_pred HHHHHHHhcCCHHHHHHHH
Q 048749 367 SLIKHLCKIKRMETVYEYL 385 (536)
Q Consensus 367 ~li~~~~~~~~~~~A~~~~ 385 (536)
....++...|++++|++.+
T Consensus 251 ~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHhhHHHH
Confidence 2344666777777777665
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=3.9e-13 Score=121.52 Aligned_cols=203 Identities=16% Similarity=0.094 Sum_probs=160.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 048749 186 VNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILN 265 (536)
Q Consensus 186 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 265 (536)
.....|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|...++......+.+..++..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 445678888889999999999999999998854 5678889999999999999999999999965444668899999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHH
Q 048749 266 GWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPE 345 (536)
Q Consensus 266 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 345 (536)
.|...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+.+.|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999998875 4577889999999999999999999999998863 3467788999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048749 346 ALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 346 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 392 (536)
|...|+++.+... .+..++..+...|.+.|++++|.+.++++.+..
T Consensus 178 A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 178 ALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 9999999987643 368889999999999999999999999998865
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=5.9e-14 Score=129.58 Aligned_cols=150 Identities=13% Similarity=-0.033 Sum_probs=69.6
Q ss_pred CCHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048749 202 HMVEEAIGVFDRRKEFGEL---DDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKR 278 (536)
Q Consensus 202 g~~~~A~~~~~~m~~~g~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 278 (536)
|++++|++.|+++.+.... .+..++..+...+...|++++|...|++.....+.+..+|..+...|...|++++|..
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~ 98 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE 98 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence 4556666666665554211 1233444455555555555555555555322223344555555555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 048749 279 FWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMK 354 (536)
Q Consensus 279 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 354 (536)
.|++..+.. +.+..++..+...+...|++++|.+.++++.+. .|+.......+..+...|++++|...+++..
T Consensus 99 ~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 99 AFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 555554432 223444445555555555555555555555442 2222222222333334444555555554443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.8e-12 Score=119.39 Aligned_cols=235 Identities=9% Similarity=0.037 Sum_probs=190.5
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC-CC----CCHHHHHHHHHHHHhcCC
Q 048749 129 INRYRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP-DL----VNEKTYGILLNRYAAAHM 203 (536)
Q Consensus 129 l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~----~~~~~~~~li~~~~~~g~ 203 (536)
.....++++.|+..|+.+.+.. +.+..++..+..+|.+.|++++|+..|++.. .+ ....+|..+...+...|+
T Consensus 12 ~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~ 89 (272)
T 3u4t_A 12 FLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQ 89 (272)
T ss_dssp HHHTTTCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTC
T ss_pred HHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHccc
Confidence 3334579999999999999864 4567789999999999999999999999876 22 224558999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048749 204 VEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDI 283 (536)
Q Consensus 204 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 283 (536)
+++|++.|++..+.. +.+..++..+...+...|++++|...+++.....+.+..+|..+...+...+++++|...|++.
T Consensus 90 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 168 (272)
T 3u4t_A 90 DSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKV 168 (272)
T ss_dssp HHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999865 5567889999999999999999999999976666778888888883444556999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCC---HhHHHHHHHHHHHcC-CCCC------HhhHHHHHHHHHhcCChHHHHHHHHHH
Q 048749 284 IKSKCEPDSVTYATFVNALTKKGK---LGTALRLFQAMWEKG-RKPD------VVTCNCIIDALCFKKRIPEALEVLREM 353 (536)
Q Consensus 284 ~~~g~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g-~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m 353 (536)
.+.. +.+...+..+...+...|+ +++|...+++..+.. -.|+ ..+|..+...|.+.|++++|.+.|+++
T Consensus 169 ~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 247 (272)
T 3u4t_A 169 LELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNI 247 (272)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8875 4457788888888888888 888999999887752 2233 257788889999999999999999999
Q ss_pred HHCCCCCCHHHHHHH
Q 048749 354 KNRGCLPNVTTYNSL 368 (536)
Q Consensus 354 ~~~g~~p~~~~~~~l 368 (536)
.+.... +...+..+
T Consensus 248 l~~~p~-~~~a~~~l 261 (272)
T 3u4t_A 248 LALDPT-NKKAIDGL 261 (272)
T ss_dssp HHHCTT-CHHHHHHH
T ss_pred HhcCcc-HHHHHHHh
Confidence 876422 44444443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.54 E-value=1.4e-12 Score=125.64 Aligned_cols=232 Identities=9% Similarity=0.060 Sum_probs=184.6
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048749 156 SNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHM-VEEAIGVFDRRKEFGELDDLSAFQNLLLW 232 (536)
Q Consensus 156 ~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 232 (536)
..+|+.+..++.+.|++++|+..|++.. .+.+..+|+.+..++...|+ +++|++.|++.++.. +.+...|..+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 5567777788888888888888888877 66778888888888888886 888888888888765 5567788888888
Q ss_pred HHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHhHH
Q 048749 233 LCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTK-KGKLGTA 311 (536)
Q Consensus 233 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~a 311 (536)
+...|++++|...|++....-+.+..+|..+..++.+.|++++|+..|+++++.. +-+...|+.+..++.. .|..++|
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHH
Confidence 8888888888888888644446688889999999999999999999999998876 4577888888888888 6665777
Q ss_pred -----HHHHHHHHHcCCCCCHhhHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--------
Q 048749 312 -----LRLFQAMWEKGRKPDVVTCNCIIDALCFKK--RIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIK-------- 376 (536)
Q Consensus 312 -----~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~-------- 376 (536)
++.|++.+... +-+...|..+...+.+.| ++++|++.+.++ +. ...+...+..+...|.+.|
T Consensus 255 ~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchH
Confidence 47788887753 235678888888888887 688999999887 33 2346788888888888874
Q ss_pred -CHHHHHHHHHHH-HhcC
Q 048749 377 -RMETVYEYLDEM-EQKN 392 (536)
Q Consensus 377 -~~~~A~~~~~~m-~~~~ 392 (536)
..++|.++|+++ .+.+
T Consensus 332 ~~~~~A~~~~~~l~~~~D 349 (382)
T 2h6f_A 332 DILNKALELCEILAKEKD 349 (382)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 258899999998 6644
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.53 E-value=5.1e-12 Score=121.60 Aligned_cols=240 Identities=9% Similarity=0.027 Sum_probs=154.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 048749 187 NEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNG 266 (536)
Q Consensus 187 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 266 (536)
+...|..+...+...|++++|++.|++.++.. +.+..+|+.+...
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-----------------------------------P~~~~a~~~~g~~ 140 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-----------------------------------AANYTVWHFRRVL 140 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-----------------------------------TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-----------------------------------ccCHHHHHHHHHH
Confidence 34556666666666666666666666665543 3344445555555
Q ss_pred HHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHH
Q 048749 267 WCVLGN-VYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPE 345 (536)
Q Consensus 267 ~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 345 (536)
+...|+ +++|+..|++.++.. +-+...|..+..++...|++++|+..|+++++.. +-+...|..+..++.+.|++++
T Consensus 141 l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~e 218 (382)
T 2h6f_A 141 LKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDN 218 (382)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTT
T ss_pred HHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHH
Confidence 555554 666666666665554 3355666666666666777777777777776652 2255667777777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHH-----HHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHH
Q 048749 346 ALEVLREMKNRGCLPNVTTYNSLIKHLCK-IKRMETV-----YEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVL 419 (536)
Q Consensus 346 A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~~~~~~A-----~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~ 419 (536)
|+..|+++.+.... +...|+.+..++.+ .|..++| ++.|++..+.. |
T Consensus 219 Al~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~----P---------------------- 271 (382)
T 2h6f_A 219 ELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV----P---------------------- 271 (382)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS----T----------------------
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC----C----------------------
Confidence 77777777765433 56777777777777 4554666 46777776654 2
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---------CHHHHHHH
Q 048749 420 ERMERNGCKMSTDTYNVILKLYVNWD--CEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKG---------RLEDALSY 488 (536)
Q Consensus 420 ~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---------~~~~A~~~ 488 (536)
-+...|+.+...+...| ++++|.+.+.++ +. -+.+...+..+...|.+.| ..++|+++
T Consensus 272 ---------~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~ 340 (382)
T 2h6f_A 272 ---------HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALEL 340 (382)
T ss_dssp ---------TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred ---------CCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 25667777777777777 578888888877 32 2345677788888887764 25888888
Q ss_pred HHHH-HHCCCCCcHHH
Q 048749 489 FHEM-RLKGMVPEPRT 503 (536)
Q Consensus 489 ~~~m-~~~g~~p~~~t 503 (536)
++++ ++ +.|+..-
T Consensus 341 ~~~l~~~--~DP~r~~ 354 (382)
T 2h6f_A 341 CEILAKE--KDTIRKE 354 (382)
T ss_dssp HHHHHHT--TCGGGHH
T ss_pred HHHHHHH--hCchhHH
Confidence 8887 54 4566555
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.4e-12 Score=127.61 Aligned_cols=300 Identities=13% Similarity=0.063 Sum_probs=189.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhc-----CC-CCCCHH
Q 048749 189 KTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDD----LSAFQNLLLWLCRYKHVEVAETFFESEK-----NE-FGYDIK 258 (536)
Q Consensus 189 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~-----~~-~~~~~~ 258 (536)
..+......+...|++++|+..|++..+.+ +.+ ..++..+...+...|+++.|...+++.. .+ .+....
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 344444555555555555555555555542 122 2344455555555566655555555421 01 111234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCC--------------------HhHHHH
Q 048749 259 TMNIILNGWCVLGNVYEAKRFWKDIIKSKC-EPD----SVTYATFVNALTKKGK--------------------LGTALR 313 (536)
Q Consensus 259 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~--------------------~~~a~~ 313 (536)
++..+...|...|++++|...+++..+... .++ ..++..+...|...|+ +++|.+
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 566666677777777777777766654210 011 3466677777777787 788887
Q ss_pred HHHHHHHc----CCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHH
Q 048749 314 LFQAMWEK----GRKP-DVVTCNCIIDALCFKKRIPEALEVLREMKNRGC-LPN----VTTYNSLIKHLCKIKRMETVYE 383 (536)
Q Consensus 314 ~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~~~~~~A~~ 383 (536)
.+++..+. +..+ ...++..+...|...|++++|...+++..+... .++ ..++..+...|...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 77766542 1111 134677788888899999999999888754210 112 3477888889999999999999
Q ss_pred HHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCC
Q 048749 384 YLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCK-MSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGM 462 (536)
Q Consensus 384 ~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 462 (536)
.+++...... + .+.. ....++..+...|...|++++|...+++..+..-
T Consensus 249 ~~~~al~~~~----~--------------------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 298 (406)
T 3sf4_A 249 YYKKTLLLAR----Q--------------------------LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 298 (406)
T ss_dssp HHHHHHHHHH----H--------------------------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----h--------------------------CcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 9988765320 0 0000 0145777888999999999999999998765310
Q ss_pred -CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCc-HHHHHHHHHHHHhhhhhhh
Q 048749 463 -GPD----QRSYTVMIHGLYDKGRLEDALSYFHEMRLK----GMVPE-PRTGILVNDMNIKLKERGE 519 (536)
Q Consensus 463 -~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~l~~~~~~~~~~~~ 519 (536)
.++ ..++..+...|...|++++|.+++++..+. +-.+. ..++..+..++...|+...
T Consensus 299 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 299 ELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 112 457788888999999999999999987653 22222 3347778888888887743
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.49 E-value=3.3e-11 Score=113.19 Aligned_cols=218 Identities=8% Similarity=-0.002 Sum_probs=162.3
Q ss_pred HHHHHHHHhCC--CCCCHHHHHHHHHHHHh-------cCCH-------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 048749 173 VELIQVFDEMP--DLVNEKTYGILLNRYAA-------AHMV-------EEAIGVFDRRKEFGELDDLSAFQNLLLWLCRY 236 (536)
Q Consensus 173 ~~A~~~~~~~~--~~~~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 236 (536)
++|..+|++.. .+.+...|..++..+.. .|++ ++|..+|++..+.-.+.+...|..++..+.+.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 56667777766 56677777777776653 4664 88888888888731244566788888888888
Q ss_pred CCHHHHHHHHHHhcCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHhHHHHH
Q 048749 237 KHVEVAETFFESEKNEFGYDIK-TMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALT-KKGKLGTALRL 314 (536)
Q Consensus 237 ~~~~~a~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~-~~g~~~~a~~~ 314 (536)
|++++|..+|++.....+.+.. +|..++..+.+.|++++|..+|++..+.. +.+...|........ ..|++++|.++
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~ 191 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKI 191 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888888886543333443 78888888888899999999998888764 334445544433322 36899999999
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 048749 315 FQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRG-CLP--NVTTYNSLIKHLCKIKRMETVYEYLDEMEQK 391 (536)
Q Consensus 315 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 391 (536)
|+...+. .+-+...|..++..+.+.|++++|..+|++..... ..| ....|..++..+.+.|+.+.|..+++++.+.
T Consensus 192 ~~~al~~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 192 FELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHh-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9988875 23367788888888889999999999999988863 344 4678888888888899999999999998876
Q ss_pred C
Q 048749 392 N 392 (536)
Q Consensus 392 ~ 392 (536)
.
T Consensus 271 ~ 271 (308)
T 2ond_A 271 F 271 (308)
T ss_dssp T
T ss_pred c
Confidence 5
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.1e-11 Score=119.73 Aligned_cols=366 Identities=14% Similarity=0.090 Sum_probs=222.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCH---HHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----CH
Q 048749 133 RFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRF---VELIQVFDEMPDLVNEKTYGILLNRYAAAH-----MV 204 (536)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~ 204 (536)
.++++.|++.|+.+.+.+ +..++..+..+|...|+. ++|...|++.... +...+..+...+...+ ++
T Consensus 16 ~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-~~~A~~~Lg~~~~~~~~~~~~~~ 90 (452)
T 3e4b_A 16 RGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-SPRAQARLGRLLAAKPGATEAEH 90 (452)
T ss_dssp HHHHHHHHHHHHHHHHHT----CCTGGGTCC-----------------------------CHHHHHHHHHTC--CCHHHH
T ss_pred CCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-CHHHHHHHHHHHHhCCCCCCcCH
Confidence 469999999999998765 455666777888888888 8999999988854 7777888877666655 78
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048749 205 EEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEV---AETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWK 281 (536)
Q Consensus 205 ~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 281 (536)
++|++.|++..+.|. ++ .+..|...|...+..+. +.+.+..... ..+...+..|...|...+.++++.....
T Consensus 91 ~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~y~~~~~~~~~~~~a~ 165 (452)
T 3e4b_A 91 HEAESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQA--AGYPEAGLAQVLLYRTQGTYDQHLDDVE 165 (452)
T ss_dssp HHHHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHH--HTCTTHHHHHHHHHHHHTCGGGGHHHHH
T ss_pred HHHHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcccCHHHHH
Confidence 999999999998773 33 56667777776655433 3334433221 1244566777777877775544444332
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcC---CHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc----CChHHHHHHHHHHH
Q 048749 282 DIIKSKCEPDSVTYATFVNALTKKG---KLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFK----KRIPEALEVLREMK 354 (536)
Q Consensus 282 ~m~~~g~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~m~ 354 (536)
.+.+.-...+...+..|...|...| +.++|++.|+...+.|.. +...+..+...|... +++++|++.|++..
T Consensus 166 ~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa 244 (452)
T 3e4b_A 166 RICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA 244 (452)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc
Confidence 2222111223337888888888899 899999999999888643 555556666677554 68999999999987
Q ss_pred HCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcC-----CCChHHHHHHHHHHCC
Q 048749 355 NRGCLPNVTTYNSLIKH-L--CKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLK-----KPEEVPWVLERMERNG 426 (536)
Q Consensus 355 ~~g~~p~~~~~~~li~~-~--~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~-----~~~~a~~~~~~~~~~~ 426 (536)
.| +...+..|... | ...+++++|+++|++..+.+ . |.....-..+...+ +.++|.+.++...
T Consensus 245 -~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--~-~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa--- 314 (452)
T 3e4b_A 245 -PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--Q-PRAELLLGKLYYEGKWVPADAKAAEAHFEKAV--- 314 (452)
T ss_dssp -GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT---
T ss_pred -CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--C-HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh---
Confidence 33 55666666666 3 45789999999999998876 2 22222222222223 3334444444443
Q ss_pred CCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC
Q 048749 427 CKMSTDTYNVILKLYVN----WDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYD----KGRLEDALSYFHEMRLKGMV 498 (536)
Q Consensus 427 ~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~ 498 (536)
+-+...+..|...|.. ..+.++|...|++..+.|. ......|...|.. ..+.++|..+|+...+.|..
T Consensus 315 -~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 315 -GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp -TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred -CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 4577888888888876 4489999999999988763 3344555555553 46899999999999988742
Q ss_pred CcHHHHHHHHHHH--HhhhhhhhhhHHHHH
Q 048749 499 PEPRTGILVNDMN--IKLKERGEQGKKVIK 526 (536)
Q Consensus 499 p~~~t~~~l~~~~--~~~~~~~~a~~~~~~ 526 (536)
.....+..+. ....+..++.+...+
T Consensus 391 ---~a~~~l~~l~~~~~~~~~~~a~~~~~~ 417 (452)
T 3e4b_A 391 ---EANDLATQLEAPLTPAQRAEGQRLVQQ 417 (452)
T ss_dssp ---HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 2222222222 223344455555554
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.9e-12 Score=125.77 Aligned_cols=209 Identities=14% Similarity=0.071 Sum_probs=140.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHhcCC-----------------HhHHHHH
Q 048749 257 IKTMNIILNGWCVLGNVYEAKRFWKDIIKS----K-CEPDSVTYATFVNALTKKGK-----------------LGTALRL 314 (536)
Q Consensus 257 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g-~~~~~~~~~~li~~~~~~g~-----------------~~~a~~~ 314 (536)
..++..+...|...|++++|...+++..+. + .+....++..+...|...|+ +++|++.
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 344555566666666666666666655432 1 01123456666667777777 7777777
Q ss_pred HHHHHHc----CCC-CCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHH
Q 048749 315 FQAMWEK----GRK-PDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCL-PN----VTTYNSLIKHLCKIKRMETVYEY 384 (536)
Q Consensus 315 ~~~m~~~----g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~~~~~~A~~~ 384 (536)
+++..+. +.. ....++..+...|...|++++|++.+++..+.... .+ ..++..+...|...|++++|.+.
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 7665442 111 12346777788888889999988888877543110 12 33778888899999999999999
Q ss_pred HHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCChhHHHHHHHHHHHC---
Q 048749 385 LDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGC-KMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKK--- 460 (536)
Q Consensus 385 ~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 460 (536)
+++...... +.+. .....++..+...|...|++++|...+++..+.
T Consensus 286 ~~~al~~~~------------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 286 YKRTLALAV------------------------------ELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp HHHHHHHHH------------------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH------------------------------HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 988765431 0000 012467778889999999999999999987753
Q ss_pred -CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048749 461 -GMG-PDQRSYTVMIHGLYDKGRLEDALSYFHEMRLK 495 (536)
Q Consensus 461 -g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 495 (536)
+.. ....++..+...|...|++++|.+++++..+.
T Consensus 336 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 336 LGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 111 11347778888999999999999999998864
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.46 E-value=7e-12 Score=118.90 Aligned_cols=275 Identities=13% Similarity=0.064 Sum_probs=178.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhcC-----C-CCCCHHH
Q 048749 190 TYGILLNRYAAAHMVEEAIGVFDRRKEFGELDD----LSAFQNLLLWLCRYKHVEVAETFFESEKN-----E-FGYDIKT 259 (536)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~-~~~~~~~ 259 (536)
.+......+...|++++|+..|+++.+.. +.+ ...+..+...+...|++++|...+++... + .+....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 34445556666777777777777766653 222 24556666667777777777776665211 1 1123456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCC--------------------HhHHHHH
Q 048749 260 MNIILNGWCVLGNVYEAKRFWKDIIKSKC-EPD----SVTYATFVNALTKKGK--------------------LGTALRL 314 (536)
Q Consensus 260 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~--------------------~~~a~~~ 314 (536)
+..+...|...|++++|...+++..+... .++ ..++..+...+...|+ +++|.+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 67777777888888888888777654210 112 3366777777788888 7888877
Q ss_pred HHHHHHc----CCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHH
Q 048749 315 FQAMWEK----GRKP-DVVTCNCIIDALCFKKRIPEALEVLREMKNRGC-LPN----VTTYNSLIKHLCKIKRMETVYEY 384 (536)
Q Consensus 315 ~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~~~~~~A~~~ 384 (536)
+++.... +..+ ...++..+...+...|++++|.+.+++..+... .++ ..++..+...+...|++++|.+.
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7766542 1111 234677777888888888888888887753210 011 33677788888888999999988
Q ss_pred HHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCChhHHHHHHHHHHHC---
Q 048749 385 LDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGC-KMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKK--- 460 (536)
Q Consensus 385 ~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 460 (536)
+++...... ..+. .....++..+...|...|++++|...+++..+.
T Consensus 246 ~~~al~~~~------------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 246 YKKTLLLAR------------------------------QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HHHHHHHHH------------------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH------------------------------hhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 888765320 0000 001456777888888999999999988887643
Q ss_pred -CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048749 461 -GMG-PDQRSYTVMIHGLYDKGRLEDALSYFHEMRLK 495 (536)
Q Consensus 461 -g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 495 (536)
+-. ....++..+...|...|++++|..++++.++.
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 111 11346777888888899999999999888764
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.9e-12 Score=126.58 Aligned_cols=300 Identities=12% Similarity=0.023 Sum_probs=209.1
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-
Q 048749 153 SPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVN----EKTYGILLNRYAAAHMVEEAIGVFDRRKEF----GELD- 221 (536)
Q Consensus 153 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~- 221 (536)
......+......+.+.|++++|...|++.. .+.+ ..+|..+...+...|++++|+..|++..+. +-.|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 3455667777777888888888888887766 3334 346777778888888888888888776432 2112
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhcCC---C---CCCHHHHHHHHHHHHhcCC--------------------HHH
Q 048749 222 DLSAFQNLLLWLCRYKHVEVAETFFESEKNE---F---GYDIKTMNIILNGWCVLGN--------------------VYE 275 (536)
Q Consensus 222 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~---~~~~~~~~~li~~~~~~g~--------------------~~~ 275 (536)
...++..+...+...|++++|...+++.... . .....++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 2446677777888888888888887763211 0 1124477888888888898 888
Q ss_pred HHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-CCC----HhhHHHHHHHHHhcCChHH
Q 048749 276 AKRFWKDIIKS----KCEP-DSVTYATFVNALTKKGKLGTALRLFQAMWEKGR-KPD----VVTCNCIIDALCFKKRIPE 345 (536)
Q Consensus 276 A~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~ 345 (536)
|...+++..+. +..+ ...++..+...+...|++++|...+++..+... .++ ..++..+...|...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 98888876542 1111 235678888899999999999999998876411 112 2378888889999999999
Q ss_pred HHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHH
Q 048749 346 ALEVLREMKNR----GCLP-NVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLE 420 (536)
Q Consensus 346 A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~ 420 (536)
|...+++..+. +..+ ...++..+...|...|++++|.+.+.+..+...
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~--------------------------- 298 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ--------------------------- 298 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------------------------
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH---------------------------
Confidence 99999987642 1111 156788888999999999999999998865420
Q ss_pred HHHHCCC-CCCHHHHHHHHHHHHccCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCH
Q 048749 421 RMERNGC-KMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKK----GMGP-DQRSYTVMIHGLYDKGRL 482 (536)
Q Consensus 421 ~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~ 482 (536)
+.+. .....++..+...|...|++++|...+++..+. +..+ ...++..+...+...|+.
T Consensus 299 ---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 299 ---ELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp ---HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred ---hcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 0000 012457778889999999999999999987643 2111 234566677777777765
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.9e-12 Score=125.76 Aligned_cols=271 Identities=13% Similarity=0.036 Sum_probs=168.0
Q ss_pred HHHHHHHccCCHHHHHHHHHhCC--CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHHHHHH
Q 048749 161 AILDVLGRARRFVELIQVFDEMP--DLVNE----KTYGILLNRYAAAHMVEEAIGVFDRRKEF----GE-LDDLSAFQNL 229 (536)
Q Consensus 161 ~li~~~~~~g~~~~A~~~~~~~~--~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~~~~~~~~~l 229 (536)
.+...+...|++++|+..|++.. .+.+. ..|..+...|...|++++|++.|++..+. +- +....++..+
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 33444445555555555555444 22222 24445555555555555555555544332 10 1123345555
Q ss_pred HHHHHhcCCHHHHHHHHHHhcCC------CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHHHHC
Q 048749 230 LLWLCRYKHVEVAETFFESEKNE------FGYDIKTMNIILNGWCVLGN-----------------VYEAKRFWKDIIKS 286 (536)
Q Consensus 230 l~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~m~~~ 286 (536)
...+...|++++|...+++.... .+....++..+...|...|+ +++|.+.+++..+.
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 55556666666666655552110 11234456677777777777 77777777765432
Q ss_pred ----CC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC-CC----HhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048749 287 ----KC-EPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRK-PD----VVTCNCIIDALCFKKRIPEALEVLREMKNR 356 (536)
Q Consensus 287 ----g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 356 (536)
+. .....++..+...|...|++++|++.+++..+.... ++ ..++..+...|...|++++|...+++..+.
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 11 112346777888888899999999988887764110 11 236788888999999999999999887543
Q ss_pred CCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCH
Q 048749 357 GCL-----PNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMST 431 (536)
Q Consensus 357 g~~-----p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~ 431 (536)
... ....++..+...|...|++++|.+.+++..+.. ++ . .......
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----~~-----------------------~--~~~~~~~ 343 (411)
T 4a1s_A 293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIA----QE-----------------------L--GDRIGEA 343 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----HH-----------------------H--TCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----HH-----------------------C--CChHHHH
Confidence 110 125678888899999999999999999886542 00 0 0001124
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHC
Q 048749 432 DTYNVILKLYVNWDCEDKVRHTWEEMEKK 460 (536)
Q Consensus 432 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 460 (536)
.++..+...|...|++++|.+.+++..+.
T Consensus 344 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 344 RACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 57788899999999999999999988764
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.45 E-value=2.9e-11 Score=113.59 Aligned_cols=215 Identities=8% Similarity=0.022 Sum_probs=177.4
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHc-------cCCH-------HHHHHHHHhCC---CCCCHHHHHHHHHHHH
Q 048749 137 EAAYTFFKWVSREGDYSPGSNVFNAILDVLGR-------ARRF-------VELIQVFDEMP---DLVNEKTYGILLNRYA 199 (536)
Q Consensus 137 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~~~---~~~~~~~~~~li~~~~ 199 (536)
+.|+.+|+.+.... +.++..|..++..+.. .|++ ++|..+|++.. .+.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 67888999988863 6688899998888763 5886 89999999876 3456778999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH-hcCCHHHH
Q 048749 200 AAHMVEEAIGVFDRRKEFGELDD-LS-AFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWC-VLGNVYEA 276 (536)
Q Consensus 200 ~~g~~~~A~~~~~~m~~~g~~~~-~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A 276 (536)
+.|++++|.++|++..+. .|+ .. +|..++..+.+.|++++|..+|++.....+.+...|........ ..|++++|
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999985 343 43 89999999999999999999999965544556666655444432 36999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC-CCC--CHhhHHHHHHHHHhcCChHHHHHHHHHH
Q 048749 277 KRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKG-RKP--DVVTCNCIIDALCFKKRIPEALEVLREM 353 (536)
Q Consensus 277 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m 353 (536)
..+|+...+.. +-+...|..++..+.+.|++++|..+|++..... +.| ....|..++....+.|+.+.|..+++++
T Consensus 189 ~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999998764 4467889999999999999999999999999963 455 3568888999999999999999999999
Q ss_pred HHC
Q 048749 354 KNR 356 (536)
Q Consensus 354 ~~~ 356 (536)
.+.
T Consensus 268 ~~~ 270 (308)
T 2ond_A 268 FTA 270 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 775
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.6e-11 Score=105.72 Aligned_cols=163 Identities=15% Similarity=0.069 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 048749 156 SNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWL 233 (536)
Q Consensus 156 ~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 233 (536)
+.+|..+...|.+.|++++|++.|++.. .+.+..+|..+..+|.+.|++++|++.+....... +.+...+..+...+
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSAN 83 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHH
Confidence 4445555555555555555555555444 34444445555555555555555555554444432 22333444444444
Q ss_pred HhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 048749 234 CRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALR 313 (536)
Q Consensus 234 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 313 (536)
...++++.|...+.......+.+...+..+...|.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++|++
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 162 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVK 162 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHH
Confidence 444444444444444322223344444444444444444444444444444332 2233444444444444444444444
Q ss_pred HHHHHHH
Q 048749 314 LFQAMWE 320 (536)
Q Consensus 314 ~~~~m~~ 320 (536)
.|++..+
T Consensus 163 ~~~~al~ 169 (184)
T 3vtx_A 163 YFKKALE 169 (184)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 4444443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.41 E-value=6.8e-12 Score=124.46 Aligned_cols=346 Identities=11% Similarity=0.028 Sum_probs=220.1
Q ss_pred HHHHHHHccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 048749 161 AILDVLGRARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMV---EEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYK 237 (536)
Q Consensus 161 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~ 237 (536)
.+...+.+.|++++|.+.|++.....+...+..+...|...|+. ++|++.|++..+. +...+..+...+...+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC-
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCC
Confidence 36677888999999999999887333445677777778788888 9999999988864 5566667777555555
Q ss_pred -----CHHHHHHHHHHh-cCCCCCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048749 238 -----HVEVAETFFESE-KNEFGYDIKTMNIILNGWCVLGNVY---EAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKL 308 (536)
Q Consensus 238 -----~~~~a~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 308 (536)
+.++|...|++. ..+ +...+..|...|...+..+ ++.+.+....+.| +...+..+...|...+.+
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCG
T ss_pred CCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCc
Confidence 788999999984 433 2237777888777655543 4555565555555 344666777888888866
Q ss_pred hHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHH
Q 048749 309 GTALRLFQAMWEKGRKPDVVTCNCIIDALCFKK---RIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKI----KRMETV 381 (536)
Q Consensus 309 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~----~~~~~A 381 (536)
+++......+.+.-...++..+..+...|.+.| +.++|++.|++..+.|.. +...+..|...|... +++++|
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A 236 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTA 236 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 555554433333322234448888888999999 999999999999988744 666556677777655 799999
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHH-H--HhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-----ChhHHHHH
Q 048749 382 YEYLDEMEQKNGSCLPNEITFNYL-L--KSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWD-----CEDKVRHT 453 (536)
Q Consensus 382 ~~~~~~m~~~~~~~~p~~~~~~~l-l--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~ 453 (536)
+++|++.. .+ ...-...+..+ . ...++.+++.+.++...+.| +...+..|...|. .| ++++|...
T Consensus 237 ~~~~~~aa-~g--~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~ 309 (452)
T 3e4b_A 237 QALLEKIA-PG--YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAH 309 (452)
T ss_dssp HHHHHHHG-GG--STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHH
T ss_pred HHHHHHHc-CC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHH
Confidence 99999998 44 32323333333 2 23355677888888888877 6778888888887 55 99999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHh----hhhhhhhhHHHH
Q 048749 454 WEEMEKKGMGPDQRSYTVMIHGLYD----KGRLEDALSYFHEMRLKGMVPEPRTGILVNDMNIK----LKERGEQGKKVI 525 (536)
Q Consensus 454 ~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~----~~~~~~a~~~~~ 525 (536)
|++.. .| +...+..|-..|.. ..++++|..+|++..+.|. +.....|..++.. ..+..+|...+.
T Consensus 310 ~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~ 382 (452)
T 3e4b_A 310 FEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQ 382 (452)
T ss_dssp HHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHH
T ss_pred HHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 99887 43 67777777766665 3499999999999988764 3334445555543 234456666665
Q ss_pred Hhhhcc
Q 048749 526 KLTSLG 531 (536)
Q Consensus 526 ~~~~~g 531 (536)
+-.+.|
T Consensus 383 ~A~~~g 388 (452)
T 3e4b_A 383 LAKAQD 388 (452)
T ss_dssp HHHTTC
T ss_pred HHHHCC
Confidence 544443
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.41 E-value=4.5e-11 Score=102.85 Aligned_cols=166 Identities=10% Similarity=-0.035 Sum_probs=100.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 048749 187 NEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNG 266 (536)
Q Consensus 187 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 266 (536)
+...|..+...|.+.|++++|++.|++..+.. +-+..++..+..++.+.|++++|...+.......+.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 45567777777777777777777777766654 44556666666666666666666666666433334455556666666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHH
Q 048749 267 WCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEA 346 (536)
Q Consensus 267 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 346 (536)
+...++++.|...+.+..+.. +.+...+..+...+.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 666666666666666655543 3345555556666666666666666666655542 22445555555666666666666
Q ss_pred HHHHHHHHH
Q 048749 347 LEVLREMKN 355 (536)
Q Consensus 347 ~~~~~~m~~ 355 (536)
++.|++..+
T Consensus 161 ~~~~~~al~ 169 (184)
T 3vtx_A 161 VKYFKKALE 169 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666665554
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.40 E-value=6.8e-12 Score=119.01 Aligned_cols=260 Identities=15% Similarity=0.136 Sum_probs=197.3
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHhCC--------CCCCHHHHHHHHHHH
Q 048749 131 RYRFDWEAAYTFFKWVSREGDYSPG----SNVFNAILDVLGRARRFVELIQVFDEMP--------DLVNEKTYGILLNRY 198 (536)
Q Consensus 131 ~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~~li~~~ 198 (536)
...|+++.|+..|+.+.+.. +.+ ..++..+...+...|++++|.+.+++.. .+....++..+...+
T Consensus 16 ~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 93 (338)
T 3ro2_A 16 CKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTL 93 (338)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHH
Confidence 34579999999999998864 334 4678899999999999999999998765 112245788889999
Q ss_pred HhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCC--------------------HHHHHHHHHHhcC--
Q 048749 199 AAAHMVEEAIGVFDRRKEFGE-LDD----LSAFQNLLLWLCRYKH--------------------VEVAETFFESEKN-- 251 (536)
Q Consensus 199 ~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~ll~~~~~~~~--------------------~~~a~~~~~~~~~-- 251 (536)
...|++++|++.+++..+... .++ ..++..+...+...|+ ++.|...+++...
T Consensus 94 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~ 173 (338)
T 3ro2_A 94 KVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLV 173 (338)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988765321 122 3477788888999999 9999988877311
Q ss_pred ----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----C-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 048749 252 ----EFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSK----C-EPDSVTYATFVNALTKKGKLGTALRLFQAMWEKG 322 (536)
Q Consensus 252 ----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 322 (536)
..+....++..+...|...|++++|...+++..+.. . .....++..+...+...|++++|...+++..+..
T Consensus 174 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 253 (338)
T 3ro2_A 174 TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA 253 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 112234578888899999999999999999876531 1 1113478888899999999999999999887641
Q ss_pred C-CCC----HhhHHHHHHHHHhcCChHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048749 323 R-KPD----VVTCNCIIDALCFKKRIPEALEVLREMKNR----GCL-PNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 323 ~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 392 (536)
. ..+ ..++..+...|...|++++|...+++..+. +.. ....++..+...|.+.|++++|.+.+++..+..
T Consensus 254 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 254 RQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred HhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 1 111 456778888999999999999999987543 111 114577788899999999999999999987754
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.40 E-value=1e-11 Score=123.94 Aligned_cols=210 Identities=14% Similarity=0.024 Sum_probs=141.4
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCH-HHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048749 135 DWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRF-VELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVF 211 (536)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~ 211 (536)
..+.+++.++...... +.+...+..+...|...|++ ++|++.|++.. .+.+...|..+...|...|++++|++.|
T Consensus 83 ~~~~al~~l~~~~~~~--~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA--QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC--CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC--chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4666777777666543 45777888888888888888 88888888776 6667778888888888888888888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc--------CCHH
Q 048749 212 DRRKEFGELDDLSAFQNLLLWLCRY---------KHVEVAETFFESEKNEFGYDIKTMNIILNGWCVL--------GNVY 274 (536)
Q Consensus 212 ~~m~~~g~~~~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~ 274 (536)
++..+.. |+...+..+...+... |++++|...+++.....+.+...|..+..+|... |+++
T Consensus 161 ~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 161 SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 8887654 6667777777777777 7777777777664333345566666666666666 6666
Q ss_pred HHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHH
Q 048749 275 EAKRFWKDIIKSKCE---PDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVL 350 (536)
Q Consensus 275 ~A~~~~~~m~~~g~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 350 (536)
+|...|++..+.. + -+...|..+..+|...|++++|++.|++..+.. +.+...+..+..++...|++++|++.+
T Consensus 239 ~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 239 QALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666666543 2 355666666666666666666666666665542 223445555555566666666655544
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.4e-11 Score=116.97 Aligned_cols=233 Identities=10% Similarity=0.065 Sum_probs=162.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHhcCC---CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C----CCCHHHHH
Q 048749 229 LLLWLCRYKHVEVAETFFESEKNE---FGY---DIKTMNIILNGWCVLGNVYEAKRFWKDIIKSK--C----EPDSVTYA 296 (536)
Q Consensus 229 ll~~~~~~~~~~~a~~~~~~~~~~---~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~----~~~~~~~~ 296 (536)
....+...|++++|...+++.... .+. ...++..+...|...|++++|...+++..+.- . .....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445566777888888777774221 111 33567778888888888888888888776531 1 11235677
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCC-CCC----HhhHHHHHHHHHhcCChHHHHHHHHHHHHC----CC-CCCHHHHH
Q 048749 297 TFVNALTKKGKLGTALRLFQAMWEKGR-KPD----VVTCNCIIDALCFKKRIPEALEVLREMKNR----GC-LPNVTTYN 366 (536)
Q Consensus 297 ~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~~~ 366 (536)
.+...|...|++++|++.+++..+... .++ ..++..+...|...|++++|++.|++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 888889999999999999888775411 111 246788889999999999999999988662 22 33467788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 048749 367 SLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDC 446 (536)
Q Consensus 367 ~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 446 (536)
.+...|.+.|++++|.+.+++..+... +.+-+.....+..+...|...|+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~------------------------------~~~~~~~~~~~~~l~~~~~~~~~ 318 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQ------------------------------KAGDVIYLSEFEFLKSLYLSGPD 318 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH------------------------------HHTCHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHH------------------------------HcCCHHHHHHHHHHHHHHhCCCc
Confidence 899999999999999999998765320 00101112335667778888888
Q ss_pred ---hhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048749 447 ---EDKVRHTWEEMEKKGMGPD-QRSYTVMIHGLYDKGRLEDALSYFHEMRL 494 (536)
Q Consensus 447 ---~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 494 (536)
+++|..++++. +..|+ ...+..+...|...|++++|.+++++..+
T Consensus 319 ~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 319 EEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66666666655 22333 34667788889999999999999998765
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.3e-11 Score=121.48 Aligned_cols=217 Identities=11% Similarity=0.007 Sum_probs=167.6
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 048749 239 VEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNV-YEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQA 317 (536)
Q Consensus 239 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 317 (536)
++.+...++......+.+...+..+...|...|++ ++|++.|++..+.. +-+..+|..+...|...|++++|.+.|++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34455555554444455777777777788888888 88888888877664 34577788888888888888888888888
Q ss_pred HHHcCCCCCHhhHHHHHHHHHhc---------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CCHHH
Q 048749 318 MWEKGRKPDVVTCNCIIDALCFK---------KRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKI--------KRMET 380 (536)
Q Consensus 318 m~~~g~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~--------~~~~~ 380 (536)
..+. .|+...+..+...|... |++++|++.|++..+.... +...|..+..+|... |++++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 8774 46667777788888888 8999999999988776432 678888888888888 88999
Q ss_pred HHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHC
Q 048749 381 VYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKK 460 (536)
Q Consensus 381 A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 460 (536)
|.+.|++..+.. |. ..-+...|..+..+|...|++++|.+.|++..+.
T Consensus 240 A~~~~~~al~~~----p~----------------------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 240 ALSAYAQAEKVD----RK----------------------------ASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHC----GG----------------------------GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC----CC----------------------------cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999988754 21 0136788999999999999999999999999876
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048749 461 GMGPDQRSYTVMIHGLYDKGRLEDALSYFHEM 492 (536)
Q Consensus 461 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 492 (536)
. +-+...+..+...+...|++++|++.+.++
T Consensus 288 ~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 288 D-PAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp C-TTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred C-CCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3 235677888889999999999998866543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.36 E-value=7.7e-09 Score=106.29 Aligned_cols=416 Identities=8% Similarity=-0.006 Sum_probs=270.2
Q ss_pred hHHHHHHhhcCCCCCHHHHHHHHHh--ccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCC---HHHHHHHHHh
Q 048749 107 GEIEKALNQCELTLTDDLIVNVINR--YRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARR---FVELIQVFDE 181 (536)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~~~~l~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~ 181 (536)
..+++.+...+. +...-...+.. ..++.+.+..+|+.+... ++.+...|...+..-.+.|. ++.+..+|++
T Consensus 53 ~~lE~~l~~np~--d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeR 128 (679)
T 4e6h_A 53 GKLNDMIEEQPT--DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLAR 128 (679)
T ss_dssp HHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHCcC--CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHH
Confidence 567777777654 55555555443 236899999999999987 67889999999999999999 9999999999
Q ss_pred CC-CC---CCHHHHHHHHHHHHhcCCH--------HHHHHHHHHHHH-cCC-CC-CHHHHHHHHHHHHh---------cC
Q 048749 182 MP-DL---VNEKTYGILLNRYAAAHMV--------EEAIGVFDRRKE-FGE-LD-DLSAFQNLLLWLCR---------YK 237 (536)
Q Consensus 182 ~~-~~---~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~~-~~~~~~~ll~~~~~---------~~ 237 (536)
.. .. +++..|..-+....+.++. +...++|+.... .|. .+ +...|...+..... .+
T Consensus 129 al~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~ 208 (679)
T 4e6h_A 129 CLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQ 208 (679)
T ss_dssp HTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHh
Confidence 88 44 8999999988877665543 344578877554 466 55 45677777765442 34
Q ss_pred CHHHHHHHHHHhcCCCCC--CHHHHHHHHHHHHhcC-------------CHHHHHHHHHHHHH--CCCC-----------
Q 048749 238 HVEVAETFFESEKNEFGY--DIKTMNIILNGWCVLG-------------NVYEAKRFWKDIIK--SKCE----------- 289 (536)
Q Consensus 238 ~~~~a~~~~~~~~~~~~~--~~~~~~~li~~~~~~g-------------~~~~A~~~~~~m~~--~g~~----------- 289 (536)
+++.+..+|+.... +|. -..+|......--..+ +++.|...+.++.. .++.
T Consensus 209 ~~~~~R~iy~raL~-iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~ 287 (679)
T 4e6h_A 209 RVQYIRKLYKTLLC-QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQAT 287 (679)
T ss_dssp HHHHHHHHHHHHTT-SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCC
T ss_pred HHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccch
Confidence 57788999998653 232 2234443332221111 12334445544322 1211
Q ss_pred ----C-----C---HHHHHHHHHHHHhcC-------CHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHH-HH
Q 048749 290 ----P-----D---SVTYATFVNALTKKG-------KLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEAL-EV 349 (536)
Q Consensus 290 ----~-----~---~~~~~~li~~~~~~g-------~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~-~~ 349 (536)
| + ...|...+.---..+ ..+.+..+|++.+.. ++-....|-..+..+.+.|+.++|. ++
T Consensus 288 ~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~i 366 (679)
T 4e6h_A 288 ESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKY 366 (679)
T ss_dssp TTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHH
T ss_pred hccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 1 0 134555554333322 123456678887775 4446777888888888889988896 99
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-------CCCCc------------HHHHHHHHHh--
Q 048749 350 LREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNG-------SCLPN------------EITFNYLLKS-- 408 (536)
Q Consensus 350 ~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-------~~~p~------------~~~~~~ll~~-- 408 (536)
|++.... ++.+...|-..+....+.|++++|.++|+++..... ...|+ ...|...+..
T Consensus 367 l~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~er 445 (679)
T 4e6h_A 367 LKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMK 445 (679)
T ss_dssp HHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHH
Confidence 9988764 344666777788888889999999999998876410 00131 1233333332
Q ss_pred -cCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048749 409 -LKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNW-DCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDAL 486 (536)
Q Consensus 409 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 486 (536)
.+..+.|..+|+...+.........|...+..-.+. ++.+.|..+|+...+. ++-+...|...+.-....|+.+.|.
T Consensus 446 R~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR 524 (679)
T 4e6h_A 446 RIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVK 524 (679)
T ss_dssp HHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHH
Confidence 355667888888887751112233443333333344 4589999999988875 3446677778888888889999999
Q ss_pred HHHHHHHHCCCCC-cH-HHHHHHHHHHHhhhhhhhhhHHHHHhhhc
Q 048749 487 SYFHEMRLKGMVP-EP-RTGILVNDMNIKLKERGEQGKKVIKLTSL 530 (536)
Q Consensus 487 ~~~~~m~~~g~~p-~~-~t~~~l~~~~~~~~~~~~a~~~~~~~~~~ 530 (536)
.+|++.+.....+ +. ..+...+..-.+.|+.+.+.++..++.+.
T Consensus 525 ~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 525 SLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999988764322 23 33777777777888888888888887654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.8e-10 Score=98.81 Aligned_cols=163 Identities=13% Similarity=0.081 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 048749 156 SNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWL 233 (536)
Q Consensus 156 ~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 233 (536)
...+..+...+...|++++|...|+++. .+.+..++..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 3456677777788888888888888776 45567777778888888888888888888777654 44566666666677
Q ss_pred HhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 048749 234 CRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALR 313 (536)
Q Consensus 234 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 313 (536)
...|++++|...++......+.+...+..+...+...|++++|...+++..+.. +.+..++..+...+...|++++|.+
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 777777777777766443334556666666666666677777776666666553 3345566666666666666666666
Q ss_pred HHHHHHH
Q 048749 314 LFQAMWE 320 (536)
Q Consensus 314 ~~~~m~~ 320 (536)
.++...+
T Consensus 166 ~~~~~~~ 172 (186)
T 3as5_A 166 HFKKANE 172 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.34 E-value=1.8e-08 Score=103.54 Aligned_cols=412 Identities=10% Similarity=0.019 Sum_probs=271.3
Q ss_pred HHHHHHHHHhhCCCC-ChhHHHH----HHhhcCCCCCHHHHHHHHHh--ccCC---HHHHHHHHHHHHhCCCCCCCHHHH
Q 048749 90 IAINVQNILKTCSVS-TKGEIEK----ALNQCELTLTDDLIVNVINR--YRFD---WEAAYTFFKWVSREGDYSPGSNVF 159 (536)
Q Consensus 90 ~~~~~~~~l~~~~~~-~~~~~~~----~l~~~~~~~~~~~~~~~l~~--~~~~---~~~a~~~~~~~~~~~~~~~~~~~~ 159 (536)
+...|...+...... ....++. ++...+ .+...-...+.. ..++ .+.+..+|+.+.......|++..|
T Consensus 65 d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP--~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 65 DIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFP--LMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 355666666543222 2233333 333333 334444333322 2346 999999999999863224899999
Q ss_pred HHHHHHHHccCCH--------HHHHHHHHhCC------CCCCHHHHHHHHHHHH---------hcCCHHHHHHHHHHHHH
Q 048749 160 NAILDVLGRARRF--------VELIQVFDEMP------DLVNEKTYGILLNRYA---------AAHMVEEAIGVFDRRKE 216 (536)
Q Consensus 160 ~~li~~~~~~g~~--------~~A~~~~~~~~------~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~ 216 (536)
...+....+.++. +...++|+... ...+...|...+.... ..++++.+.++|++.+.
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 9998877765554 34557888643 2345678988887654 34467889999999986
Q ss_pred cCCCCCHHHHHHHHHHHHh-------------cCCHHHHHHHHHHh---cCC----CCC-------------------CH
Q 048749 217 FGELDDLSAFQNLLLWLCR-------------YKHVEVAETFFESE---KNE----FGY-------------------DI 257 (536)
Q Consensus 217 ~g~~~~~~~~~~ll~~~~~-------------~~~~~~a~~~~~~~---~~~----~~~-------------------~~ 257 (536)
.....-..+|......-.. ...++.|...+..+ ..+ ++. ..
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql 302 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQL 302 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHH
Confidence 3222223344322221111 11233444444432 111 111 12
Q ss_pred HHHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHH-HHHHHHHHcCCCCCHhh
Q 048749 258 KTMNIILNGWCVLG-------NVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTAL-RLFQAMWEKGRKPDVVT 329 (536)
Q Consensus 258 ~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~~g~~p~~~~ 329 (536)
..|...+.---..+ ..+.+..+|++....- +-+...|...+.-+...|+.++|. ++|++.... ++.+...
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~L 380 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHH
Confidence 45666665433322 1334567788887653 457788888888888999999997 999999874 5556667
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCC---------CCCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048749 330 CNCIIDALCFKKRIPEALEVLREMKNRG---------CLPN------------VTTYNSLIKHLCKIKRMETVYEYLDEM 388 (536)
Q Consensus 330 ~~~li~~~~~~g~~~~A~~~~~~m~~~g---------~~p~------------~~~~~~li~~~~~~~~~~~A~~~~~~m 388 (536)
|...+...-+.|++++|.++|+.+.+.. -.|+ ..+|...+....+.|..+.|..+|..+
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7888888999999999999999987631 0132 346888888888899999999999999
Q ss_pred Hhc-CCCCCCcHHHHHHHHHhc-CC-CChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCC-
Q 048749 389 EQK-NGSCLPNEITFNYLLKSL-KK-PEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGP- 464 (536)
Q Consensus 389 ~~~-~~~~~p~~~~~~~ll~~~-~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p- 464 (536)
.+. .. ..+......+.+... ++ .+.|.++|+...+. ++-+...+...++.....|+.+.|..+|+........+
T Consensus 461 ~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~ 538 (679)
T 4e6h_A 461 RRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSH 538 (679)
T ss_dssp HHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTT
T ss_pred HHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHH
Confidence 876 31 334444444555433 33 67899999988875 45567778889998889999999999999998864322
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHH
Q 048749 465 -DQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRTGILVND 509 (536)
Q Consensus 465 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~ 509 (536)
....|...+.--.+.|+.+.+..+.++|.+. .|+.....++..
T Consensus 539 ~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ 582 (679)
T 4e6h_A 539 LLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTN 582 (679)
T ss_dssp HHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHH
Confidence 3467888888888999999999999999985 455444444443
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=4.1e-11 Score=112.42 Aligned_cols=237 Identities=11% Similarity=0.071 Sum_probs=168.7
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHhCCC----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------
Q 048749 154 PGSNVFNAILDVLGRARRFVELIQVFDEMPD----------LVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEF------ 217 (536)
Q Consensus 154 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------ 217 (536)
.+..++..+...+...|++++|...|+++.. +....++..+...|...|++++|++.|++..+.
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 3467889999999999999999999988761 123456888999999999999999999998764
Q ss_pred CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--
Q 048749 218 GE-LDDLSAFQNLLLWLCRYKHVEVAETFFESEKN--------EFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKS-- 286 (536)
Q Consensus 218 g~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-- 286 (536)
+- +....++..+...+...|++++|...+++... ..+....++..+...|...|++++|.++++++.+.
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 22 23356788888999999999999999988422 12335567888999999999999999999998764
Q ss_pred ----CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc-------CCCCCHh-------hHHHHHHHHHhcCChHHHH
Q 048749 287 ----KCEP-DSVTYATFVNALTKKGKLGTALRLFQAMWEK-------GRKPDVV-------TCNCIIDALCFKKRIPEAL 347 (536)
Q Consensus 287 ----g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~~p~~~-------~~~~li~~~~~~g~~~~A~ 347 (536)
+..| ...++..+...|...|++++|.+.++++.+. ...+... .+..+...+...+.+.+|.
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 264 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYG 264 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 2122 3457888889999999999999999998863 1122211 2222333444556666777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 048749 348 EVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQK 391 (536)
Q Consensus 348 ~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 391 (536)
..+....... ..+..++..+...|.+.|++++|.+.|++..+.
T Consensus 265 ~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 265 GWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp ---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 7777665432 224677888999999999999999999988764
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=4.8e-11 Score=111.94 Aligned_cols=247 Identities=10% Similarity=0.024 Sum_probs=153.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc-----
Q 048749 254 GYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKS-------KCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEK----- 321 (536)
Q Consensus 254 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----- 321 (536)
+.+..++..+...|...|++++|..+++++.+. ..+....++..+...|...|++++|...+++..+.
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 345667888888888888888888888887762 22334566778888888899999999888887764
Q ss_pred -CC-CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048749 322 -GR-KPDVVTCNCIIDALCFKKRIPEALEVLREMKNR------GCLP-NVTTYNSLIKHLCKIKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 322 -g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 392 (536)
+- .....++..+...|...|++++|...|+++.+. +..| ....+..+...|...|++++|.++++++.+..
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 22 223557788888899999999999999988653 2222 35667888889999999999999999886641
Q ss_pred CCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHC-------CCCCC
Q 048749 393 GSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKK-------GMGPD 465 (536)
Q Consensus 393 ~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~ 465 (536)
. .......+....++..+...|...|++++|.+.++++.+. ...+.
T Consensus 184 ~---------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 236 (311)
T 3nf1_A 184 Q---------------------------TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE 236 (311)
T ss_dssp H---------------------------HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred H---------------------------HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 0 0000000112345667777777888888888888777642 11111
Q ss_pred H-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-cHHHHHHHHHHHHhhhhhhhhhHHHHHhhh
Q 048749 466 Q-------RSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVP-EPRTGILVNDMNIKLKERGEQGKKVIKLTS 529 (536)
Q Consensus 466 ~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~~~~~~a~~~~~~~~~ 529 (536)
. ..+..+...+...+.+.+|...++..... .| +..++..+..++.+.|+.++|.+.+.+..+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 237 NKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD--SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -CCHHHHHHHHHHC-------CCSCCCC-----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 11222223333445555555555555432 23 234466777777777777777777776543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.31 E-value=5.7e-10 Score=95.59 Aligned_cols=166 Identities=10% Similarity=0.022 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048749 224 SAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALT 303 (536)
Q Consensus 224 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 303 (536)
..+..+...+...|++++|...++......+.+..++..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 3455566667777777777777777655555567777777777777888888888887776654 345667777777788
Q ss_pred hcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048749 304 KKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYE 383 (536)
Q Consensus 304 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~ 383 (536)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+... .+...+..+...+...|++++|.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888888777652 33566777777788888888888888888766532 356777778888888888888888
Q ss_pred HHHHHHhcC
Q 048749 384 YLDEMEQKN 392 (536)
Q Consensus 384 ~~~~m~~~~ 392 (536)
.++++.+..
T Consensus 166 ~~~~~~~~~ 174 (186)
T 3as5_A 166 HFKKANELD 174 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHcC
Confidence 888776543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.29 E-value=4e-10 Score=109.16 Aligned_cols=232 Identities=9% Similarity=0.053 Sum_probs=159.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHhcCC---CC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCC-CHHHHH
Q 048749 229 LLLWLCRYKHVEVAETFFESEKNE---FG---YDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSK-----CEP-DSVTYA 296 (536)
Q Consensus 229 ll~~~~~~~~~~~a~~~~~~~~~~---~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~~-~~~~~~ 296 (536)
....+...|++++|...|++.... .+ ....++..+...|...|+++.|...+++..+.. ..+ ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 344566788888888888874321 11 124567788888888999999988888876521 111 245677
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHc----CCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCHHHHH
Q 048749 297 TFVNALTKKGKLGTALRLFQAMWEK----GRKP-DVVTCNCIIDALCFKKRIPEALEVLREMKN-----RGCLPNVTTYN 366 (536)
Q Consensus 297 ~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~ 366 (536)
.+...|...|++++|.+.|++..+. +..+ ...++..+...|...|++++|++.|++..+ .... ...++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHH
Confidence 8888889999999999988887763 1111 234677788889999999999999998876 3222 367788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 048749 367 SLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDC 446 (536)
Q Consensus 367 ~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 446 (536)
.+...|.+.|++++|...+++..+.... .+.+.....+..+...|...|+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~------------------------------~~~~~~~~~~~~l~~ly~~~~~ 315 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITA------------------------------RSHKFYKELFLFLQAVYKETVD 315 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCT------------------------------TCCSCHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH------------------------------cCCHHHHHHHHHHHHHHhCCCc
Confidence 8888999999999999999988765410 0111122344555566666777
Q ss_pred ---hhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048749 447 ---EDKVRHTWEEMEKKGMGPD-QRSYTVMIHGLYDKGRLEDALSYFHEMRL 494 (536)
Q Consensus 447 ---~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 494 (536)
+++|...+++ .+..|+ ...+..+...|...|++++|..+|++..+
T Consensus 316 ~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 316 ERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5566666554 222222 34556777888889999999999888764
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.4e-10 Score=111.01 Aligned_cols=234 Identities=9% Similarity=-0.019 Sum_probs=173.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-CC-----CHhhHH
Q 048749 263 ILNGWCVLGNVYEAKRFWKDIIKS----KCEP-DSVTYATFVNALTKKGKLGTALRLFQAMWEKGR-KP-----DVVTCN 331 (536)
Q Consensus 263 li~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p-----~~~~~~ 331 (536)
....+...|++++|...|++..+. +-.+ ...++..+...|...|++++|...+++..+.-. .+ ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 556677899999999999998764 1111 246788889999999999999999998876411 11 135678
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Q 048749 332 CIIDALCFKKRIPEALEVLREMKNRGCL-PN----VTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLL 406 (536)
Q Consensus 332 ~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll 406 (536)
.+...|...|++++|.+.|++..+.... ++ ..++..+...|...|++++|.+.|.+..+..
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~-------------- 254 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVF-------------- 254 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--------------
Confidence 8889999999999999999987643110 12 3478888999999999999999999876521
Q ss_pred HhcCCCChHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCChhHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCC
Q 048749 407 KSLKKPEEVPWVLERMERNGC-KMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKK----GMGPDQRSYTVMIHGLYDKGR 481 (536)
Q Consensus 407 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~~~li~~~~~~g~ 481 (536)
.+.+. +....++..+...|.+.|++++|...+++..+. +-+.....+..+...+...|+
T Consensus 255 ----------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~ 318 (383)
T 3ulq_A 255 ----------------EESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPD 318 (383)
T ss_dssp ----------------HHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCC
T ss_pred ----------------HhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence 11121 223567888999999999999999999987653 111112335667777888898
Q ss_pred ---HHHHHHHHHHHHHCCCCCcH-HHHHHHHHHHHhhhhhhhhhHHHHHhhh
Q 048749 482 ---LEDALSYFHEMRLKGMVPEP-RTGILVNDMNIKLKERGEQGKKVIKLTS 529 (536)
Q Consensus 482 ---~~~A~~~~~~m~~~g~~p~~-~t~~~l~~~~~~~~~~~~a~~~~~~~~~ 529 (536)
+++|+.++++. +..|+. ..+..+...+...|+.++|.+.+.+..+
T Consensus 319 ~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 319 EEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777777765 344443 3478899999999999999999988643
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.8e-09 Score=104.26 Aligned_cols=271 Identities=11% Similarity=0.001 Sum_probs=173.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHhcC---CCC-C--CHHHHHH
Q 048749 193 ILLNRYAAAHMVEEAIGVFDRRKEFGELDDLS----AFQNLLLWLCRYKHVEVAETFFESEKN---EFG-Y--DIKTMNI 262 (536)
Q Consensus 193 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~-~--~~~~~~~ 262 (536)
.....+...|++++|...+++.....-..+.. ++..+...+...|+++.|...+++... ... + ...++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 33445556777777777777766543222222 345555666777788777777776311 111 1 1233566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC--C--CHhhHH
Q 048749 263 ILNGWCVLGNVYEAKRFWKDIIKS----KCE--P-DSVTYATFVNALTKKGKLGTALRLFQAMWEKGRK--P--DVVTCN 331 (536)
Q Consensus 263 li~~~~~~g~~~~A~~~~~~m~~~----g~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p--~~~~~~ 331 (536)
+...+...|++++|...+++..+. +.. | ...++..+...+...|++++|...+++....... + ...++.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 777788888998888888877642 221 2 2345666777888899999999999888764221 1 234567
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHH-----HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHH
Q 048749 332 CIIDALCFKKRIPEALEVLREMKNRGCLPN-VTTYN-----SLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYL 405 (536)
Q Consensus 332 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~-----~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~l 405 (536)
.+...+...|++++|...+++.......++ ...+. ..+..+...|++++|...+.+...... .+.
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~--~~~------- 249 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEF--ANN------- 249 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCC--TTC-------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCC--Ccc-------
Confidence 778888899999999999988764311111 11222 233447788999999999888754331 000
Q ss_pred HHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcC
Q 048749 406 LKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKK----GMGPDQ-RSYTVMIHGLYDKG 480 (536)
Q Consensus 406 l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~~~~~li~~~~~~g 480 (536)
......+..+...+...|++++|...+++.... |..++. ..+..+..++...|
T Consensus 250 ----------------------~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g 307 (373)
T 1hz4_A 250 ----------------------HFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAG 307 (373)
T ss_dssp ----------------------GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ----------------------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhC
Confidence 011234556777888889999998888877542 222222 25566667788889
Q ss_pred CHHHHHHHHHHHHH
Q 048749 481 RLEDALSYFHEMRL 494 (536)
Q Consensus 481 ~~~~A~~~~~~m~~ 494 (536)
+.++|...+++...
T Consensus 308 ~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 308 RKSDAQRVLLDALK 321 (373)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999988888764
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.25 E-value=4.8e-09 Score=101.25 Aligned_cols=265 Identities=9% Similarity=-0.022 Sum_probs=188.3
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHhCC----CCCCH----HHHHH
Q 048749 126 VNVINRYRFDWEAAYTFFKWVSREGDYSPGS----NVFNAILDVLGRARRFVELIQVFDEMP----DLVNE----KTYGI 193 (536)
Q Consensus 126 ~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~----~~~~~ 193 (536)
...+....++++.|+..++.+..... ..+. .+++.+...+...|++++|...+++.. ...+. .++..
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 33444456899999999999887541 2222 256777788889999999999998876 22222 33667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHhc---CCCC--CCHHHHH
Q 048749 194 LLNRYAAAHMVEEAIGVFDRRKEF----GEL--D-DLSAFQNLLLWLCRYKHVEVAETFFESEK---NEFG--YDIKTMN 261 (536)
Q Consensus 194 li~~~~~~g~~~~A~~~~~~m~~~----g~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~--~~~~~~~ 261 (536)
+...+...|++++|.+.+++..+. +.. | ....+..+...+...|++++|...+++.. .... ....++.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 788899999999999999887643 222 2 23456678888999999999999998831 2111 1345678
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHH-----HHHHHHHhcCCHhHHHHHHHHHHHcCCCCC---HhhHHH
Q 048749 262 IILNGWCVLGNVYEAKRFWKDIIKSKCEPD-SVTYA-----TFVNALTKKGKLGTALRLFQAMWEKGRKPD---VVTCNC 332 (536)
Q Consensus 262 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~-----~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~ 332 (536)
.+...+...|++++|...+++.......++ ...+. ..+..+...|++++|...+++.......+. ...+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 888899999999999999998875321111 11222 233447789999999999988776432211 224567
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 048749 333 IIDALCFKKRIPEALEVLREMKNR----GCLPNV-TTYNSLIKHLCKIKRMETVYEYLDEMEQK 391 (536)
Q Consensus 333 li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 391 (536)
+...+...|++++|...++..... |..++. ..+..+..++...|+.++|...+.+....
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 788899999999999999987532 222222 35666777888999999999999987654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=2.3e-10 Score=118.98 Aligned_cols=166 Identities=11% Similarity=0.026 Sum_probs=144.0
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 048749 153 SPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLL 230 (536)
Q Consensus 153 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 230 (536)
+.+..+|+.+..+|.+.|++++|++.|++.. .+.+..+|..+..+|.+.|++++|++.|++.++.. +.+..+|..+.
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg 84 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG 84 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 3457789999999999999999999999887 67788899999999999999999999999998875 55688999999
Q ss_pred HHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhH
Q 048749 231 LWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGT 310 (536)
Q Consensus 231 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 310 (536)
.++.+.|++++|.+.|++..+--+.+..+|+.+...|.+.|++++|++.|++..+.. +-+...|..+..++...|++++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence 999999999999999998544345678899999999999999999999999998875 4467889999999999999999
Q ss_pred HHHHHHHHHH
Q 048749 311 ALRLFQAMWE 320 (536)
Q Consensus 311 a~~~~~~m~~ 320 (536)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9888887765
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=6.9e-10 Score=115.40 Aligned_cols=167 Identities=11% Similarity=0.041 Sum_probs=146.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 048749 186 VNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILN 265 (536)
Q Consensus 186 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 265 (536)
.+..+|+.+...|.+.|++++|++.|++.++.. +-+..++..+..+|.+.|++++|...|++..+..+.+..+|+.+..
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 356789999999999999999999999999875 5568899999999999999999999999954444667899999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHH
Q 048749 266 GWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPE 345 (536)
Q Consensus 266 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 345 (536)
+|.+.|++++|++.|++..+.. +-+..+|..+..+|...|++++|++.|++..+.. +-+...+..+..+|...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence 9999999999999999998875 4567899999999999999999999999999863 2257789999999999999999
Q ss_pred HHHHHHHHHH
Q 048749 346 ALEVLREMKN 355 (536)
Q Consensus 346 A~~~~~~m~~ 355 (536)
|.+.++++.+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999888754
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.16 E-value=5.6e-09 Score=93.06 Aligned_cols=195 Identities=12% Similarity=0.018 Sum_probs=99.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 048749 187 NEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNG 266 (536)
Q Consensus 187 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 266 (536)
|...|......+...|++++|++.|++..+...+++...+..+..++...|++++|...+++.....+.+..+|..+...
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 34455555555555555555555555555544224555555555555555666666655555433323345555556666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC---HhhHHHHHHH
Q 048749 267 WCVLGNVYEAKRFWKDIIKSKCEPDS-------VTYATFVNALTKKGKLGTALRLFQAMWEKGRKPD---VVTCNCIIDA 336 (536)
Q Consensus 267 ~~~~g~~~~A~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~ 336 (536)
|...|++++|...+++..+.. +.+. ..|..+...+...|++++|++.|++..+. .|+ ...+..+..+
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHH
Confidence 666666666666666655543 2223 33555555556666666666666666553 333 3344444444
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048749 337 LCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 337 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 392 (536)
|...| ..+++++...+. .+...|.... ....+.+++|...|++..+..
T Consensus 163 ~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 163 FYNNG-----ADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHH-----HHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHH-----HHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 44332 233344433321 1233333322 223345666777777666644
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.14 E-value=6.1e-09 Score=100.79 Aligned_cols=227 Identities=10% Similarity=-0.008 Sum_probs=132.0
Q ss_pred HHHHHHHccCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--C---CC-CHHHH
Q 048749 161 AILDVLGRARRFVELIQVFDEMP----DLVN----EKTYGILLNRYAAAHMVEEAIGVFDRRKEFG--E---LD-DLSAF 226 (536)
Q Consensus 161 ~li~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~---~~-~~~~~ 226 (536)
.....+...|++++|...|++.. ..++ ..++..+...|...|++++|+..+.+..+.. . .+ ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 33444555566666665555543 1111 2345555666666666666666665554321 0 01 13355
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhcC---CCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 048749 227 QNLLLWLCRYKHVEVAETFFESEKN---EFG---YDIKTMNIILNGWCVLGNVYEAKRFWKDIIK-----SKCEPDSVTY 295 (536)
Q Consensus 227 ~~ll~~~~~~~~~~~a~~~~~~~~~---~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~~ 295 (536)
+.+...|...|++++|...|++... ... ....+++.+...|...|++++|...+++..+ .. +....++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHH
Confidence 5666666666666666666665211 111 1234566677777777777777777777665 32 2235667
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCC----CCCHhhHHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCCC-HHHHHH
Q 048749 296 ATFVNALTKKGKLGTALRLFQAMWEKGR----KPDVVTCNCIIDALCFKKR---IPEALEVLREMKNRGCLPN-VTTYNS 367 (536)
Q Consensus 296 ~~li~~~~~~g~~~~a~~~~~~m~~~g~----~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~-~~~~~~ 367 (536)
..+...+.+.|++++|...+++..+... +.....+..+...|...|+ +++|+.++++. +..++ ...+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~ 341 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHH
Confidence 7777778888888888888877766421 1122344555555666666 66666666652 22222 345566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc
Q 048749 368 LIKHLCKIKRMETVYEYLDEMEQK 391 (536)
Q Consensus 368 li~~~~~~~~~~~A~~~~~~m~~~ 391 (536)
+...|.+.|++++|.+.|++..+.
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH
Confidence 777888888888888888877654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.14 E-value=4.7e-09 Score=93.58 Aligned_cols=194 Identities=9% Similarity=-0.045 Sum_probs=134.3
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 048749 154 PGSNVFNAILDVLGRARRFVELIQVFDEMP--DL-VNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLL 230 (536)
Q Consensus 154 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 230 (536)
.|+..+......+.+.|++++|...|++.. .+ ++...+..+..++...|++++|++.|++..+.. +.+..++..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 456777778888888888888888888776 44 677777778888888888888888888887754 34566777788
Q ss_pred HHHHhcCCHHHHHHHHHHhcCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHH
Q 048749 231 LWLCRYKHVEVAETFFESEKNEFGYDI-------KTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEP--DSVTYATFVNA 301 (536)
Q Consensus 231 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~li~~ 301 (536)
..+...|++++|...+++.....+.+. .+|..+...+...|++++|...|++..+.. +- +...|..+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHHH
Confidence 888888888888888887544334455 457777778888888888888888887653 22 34566666666
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048749 302 LTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRG 357 (536)
Q Consensus 302 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 357 (536)
|...| ..+++.+...+. .+...|.... ....+.+++|+..|++..+..
T Consensus 163 ~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 163 FYNNG-----ADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHH-----HHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHH-----HHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 65443 334455544422 2334443333 334566788888888887753
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.13 E-value=9.9e-10 Score=101.17 Aligned_cols=223 Identities=13% Similarity=0.059 Sum_probs=154.3
Q ss_pred ccCCHHHHHHHHHhCC-------C---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CC-CCCHHHHHHHH
Q 048749 168 RARRFVELIQVFDEMP-------D---LVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEF------GE-LDDLSAFQNLL 230 (536)
Q Consensus 168 ~~g~~~~A~~~~~~~~-------~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~-~~~~~~~~~ll 230 (536)
..|++++|+..|++.. . +....++..+...|...|++++|++.|++..+. +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 4566666665555544 1 234567889999999999999999999998764 22 23356788899
Q ss_pred HHHHhcCCHHHHHHHHHHhcCC--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHH
Q 048749 231 LWLCRYKHVEVAETFFESEKNE--------FGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKS------KCEP-DSVTY 295 (536)
Q Consensus 231 ~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~~-~~~~~ 295 (536)
..+...|++++|...+++.... .+....++..+...|...|++++|...+++..+. +..| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999984221 2345677889999999999999999999998765 1122 35678
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHc-------CCCCCH-hhHHHHHHHHHhcCChHHHHHHHHHHH----HCC--CCCC
Q 048749 296 ATFVNALTKKGKLGTALRLFQAMWEK-------GRKPDV-VTCNCIIDALCFKKRIPEALEVLREMK----NRG--CLPN 361 (536)
Q Consensus 296 ~~li~~~~~~g~~~~a~~~~~~m~~~-------g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g--~~p~ 361 (536)
..+...|...|++++|..++++..+. ...+.. ..+..+...+...+....+.. +..+. ..+ ....
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHhcCCCCHHH
Confidence 88899999999999999999998864 122222 233333333333333333322 22221 111 1123
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 048749 362 VTTYNSLIKHLCKIKRMETVYEYLDEMEQK 391 (536)
Q Consensus 362 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 391 (536)
..++..+...|...|++++|..+|++..+.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 567888899999999999999999988653
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.12 E-value=6.4e-10 Score=102.48 Aligned_cols=232 Identities=11% Similarity=-0.011 Sum_probs=131.1
Q ss_pred cCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc------CCCC-CHhhHHHHHH
Q 048749 270 LGNVYEAKRFWKDIIK-------SKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEK------GRKP-DVVTCNCIID 335 (536)
Q Consensus 270 ~g~~~~A~~~~~~m~~-------~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~~~~~li~ 335 (536)
.|++++|...+++..+ ...+....++..+...|...|++++|+..+++..+. +-.| ...++..+..
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 4455555554444433 121223556777777888888888888888777654 1122 3456777888
Q ss_pred HHHhcCChHHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHh
Q 048749 336 ALCFKKRIPEALEVLREMKNR------GC-LPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKS 408 (536)
Q Consensus 336 ~~~~~g~~~~A~~~~~~m~~~------g~-~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~ 408 (536)
.|...|++++|.+.|++..+. .. +....++..+...|...|++++|.+.++++.+..
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------------- 157 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIY---------------- 157 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH----------------
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----------------
Confidence 888888888888888877643 11 1236678888889999999999999999886641
Q ss_pred cCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHC-------CCCCC-HHHHHHHHHHHHhcC
Q 048749 409 LKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKK-------GMGPD-QRSYTVMIHGLYDKG 480 (536)
Q Consensus 409 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~-~~~~~~li~~~~~~g 480 (536)
+.......+....++..+...|...|++++|...+++..+. ...+. ...|..+...+...+
T Consensus 158 -----------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (283)
T 3edt_B 158 -----------ATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKD 226 (283)
T ss_dssp -----------HHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTC
T ss_pred -----------HHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCC
Confidence 00000000112456667777777788888888877776642 11111 122333322333222
Q ss_pred CHHHHHHHHHHH--HHC-C-CCCc-HHHHHHHHHHHHhhhhhhhhhHHHHHhh
Q 048749 481 RLEDALSYFHEM--RLK-G-MVPE-PRTGILVNDMNIKLKERGEQGKKVIKLT 528 (536)
Q Consensus 481 ~~~~A~~~~~~m--~~~-g-~~p~-~~t~~~l~~~~~~~~~~~~a~~~~~~~~ 528 (536)
....+..+.... .+. + ..|+ ..++..+..++...|+.++|.+.+.+..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 279 (283)
T 3edt_B 227 KRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCAS 279 (283)
T ss_dssp CCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 222222111110 001 1 1122 2336667777777777777777776653
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.06 E-value=1.2e-08 Score=82.00 Aligned_cols=129 Identities=17% Similarity=0.189 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 048749 190 TYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCV 269 (536)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 269 (536)
.|..+...+...|++++|+++|+++.+.+ +.+...+..+...+...|++++|..++++.....+.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 34555555666666666666666655543 23444455555555555555555555555322223344455555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 048749 270 LGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWE 320 (536)
Q Consensus 270 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 320 (536)
.|++++|.++++++.+.. +.+..++..+...+...|++++|.+.++++.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 555555555555554433 22344455555555555555555555555444
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.04 E-value=1.1e-07 Score=86.96 Aligned_cols=206 Identities=9% Similarity=0.043 Sum_probs=136.4
Q ss_pred ccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048749 168 RARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFE 247 (536)
Q Consensus 168 ~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 247 (536)
-.|.+..++.-..++.........-.+.++|...|++... ..-.|....+..+... ...+ |...|+
T Consensus 25 y~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~-~~~~----a~~~l~ 90 (310)
T 3mv2_B 25 YTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQF-LDTK----NIEELE 90 (310)
T ss_dssp TTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHH-HTTT----CCHHHH
T ss_pred HhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHH-hccc----HHHHHH
Confidence 3566666665444444222223334455666666665531 1123343343333332 2322 667777
Q ss_pred HhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC-
Q 048749 248 SEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKC-EPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKP- 325 (536)
Q Consensus 248 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p- 325 (536)
+....-+++..++..+..++...|++++|++++.+.+..|. .-+...+..++..+.+.|+.+.|.+.++.|.+. .|
T Consensus 91 ~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d 168 (310)
T 3mv2_B 91 NLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IED 168 (310)
T ss_dssp HTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCH
T ss_pred HHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--Ccc
Confidence 75433355666667888889999999999999999877653 235677888889999999999999999999874 55
Q ss_pred ----CHhhHHHHHHHHH--hcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 048749 326 ----DVVTCNCIIDALC--FKK--RIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQK 391 (536)
Q Consensus 326 ----~~~~~~~li~~~~--~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 391 (536)
+..+...++.++. ..| ++++|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+.
T Consensus 169 ~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 169 TVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred ccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3556666666633 334 899999999999765 355344445555899999999999999977653
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.03 E-value=9.7e-09 Score=82.50 Aligned_cols=129 Identities=14% Similarity=0.150 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 048749 157 NVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLC 234 (536)
Q Consensus 157 ~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 234 (536)
..|..+...+...|++++|..+|+++. .+.+...|..+...+...|++++|.+.|+++.+.+ +.+...+..+...+.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 357778888889999999999998876 56678888889999999999999999999988765 556778888888999
Q ss_pred hcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048749 235 RYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKS 286 (536)
Q Consensus 235 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 286 (536)
..|++++|...++.+....+.+..++..+...+.+.|++++|...++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 9999999999998865444567888889999999999999999999988764
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.99 E-value=2.2e-07 Score=84.89 Aligned_cols=185 Identities=12% Similarity=0.056 Sum_probs=105.5
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-CCCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 048749 276 AKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGR-KPDVVTCNCIIDALCFKKRIPEALEVLREMK 354 (536)
Q Consensus 276 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 354 (536)
|...|++..+.+ .++..++..+..++...|++++|++++.+.+..|- .-+...+..++..+.+.|+.+.|.++++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555554443 34444444555666666666666666665544432 1234455555666666666666666666665
Q ss_pred HCCCCC-----CHHHHHHHHHHHHh--cC--CHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHC
Q 048749 355 NRGCLP-----NVTTYNSLIKHLCK--IK--RMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERN 425 (536)
Q Consensus 355 ~~g~~p-----~~~~~~~li~~~~~--~~--~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~ 425 (536)
+. .| +..+...|..++.. .| +..+|+.+|+++.+..
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--------------------------------- 208 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--------------------------------- 208 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS---------------------------------
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC---------------------------------
Confidence 43 23 13333444444222 22 5666666666654432
Q ss_pred CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHC-----C----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048749 426 GCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKK-----G----MGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKG 496 (536)
Q Consensus 426 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 496 (536)
|+..+...++.++.+.|++++|.+.++.+.+. . -+-|..++..+|......|+ +|.++++++.+.
T Consensus 209 ---p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~- 282 (310)
T 3mv2_B 209 ---PTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL- 282 (310)
T ss_dssp ---CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT-
T ss_pred ---CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh-
Confidence 33233334444788899999999999876542 0 02356677666666666776 888999998874
Q ss_pred CCCcHHH
Q 048749 497 MVPEPRT 503 (536)
Q Consensus 497 ~~p~~~t 503 (536)
.|+...
T Consensus 283 -~P~hp~ 288 (310)
T 3mv2_B 283 -DHEHAF 288 (310)
T ss_dssp -TCCCHH
T ss_pred -CCCChH
Confidence 465443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=2.2e-08 Score=93.00 Aligned_cols=206 Identities=10% Similarity=-0.005 Sum_probs=135.0
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 048749 171 RFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEF----GELDD-LSAFQNLLLWLCRYKHVEVAETF 245 (536)
Q Consensus 171 ~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~~-~~~~~~ll~~~~~~~~~~~a~~~ 245 (536)
++++|...|++. ...|...|++++|++.|.+..+. |-+++ ..+|+.+..+|.+.|++++|...
T Consensus 32 ~~~~A~~~~~~a------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~ 99 (292)
T 1qqe_A 32 KFEEAADLCVQA------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDS 99 (292)
T ss_dssp HHHHHHHHHHHH------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 477777776665 44567778888888888776543 31222 45777788888888888888887
Q ss_pred HHHhcC-----CCC-CCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHhHHHH
Q 048749 246 FESEKN-----EFG-YDIKTMNIILNGWCVL-GNVYEAKRFWKDIIKSKCE-PD----SVTYATFVNALTKKGKLGTALR 313 (536)
Q Consensus 246 ~~~~~~-----~~~-~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~~~~a~~ 313 (536)
+++... +-. .-..+++.+...|... |++++|+..|++..+.... .+ ..++..+...+.+.|++++|+.
T Consensus 100 ~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 179 (292)
T 1qqe_A 100 LENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASD 179 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 776311 100 1134677888888885 8888888888887653200 01 3467778888888888888888
Q ss_pred HHHHHHHcCCCCCH------hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHH--hcCCHH
Q 048749 314 LFQAMWEKGRKPDV------VTCNCIIDALCFKKRIPEALEVLREMKNRGCLPN------VTTYNSLIKHLC--KIKRME 379 (536)
Q Consensus 314 ~~~~m~~~g~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~~~~~li~~~~--~~~~~~ 379 (536)
.|++..+....... ..|..+..++...|++++|...|++..+. .|+ ...+..++.+|. ..++++
T Consensus 180 ~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~ 257 (292)
T 1qqe_A 180 IYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLS 257 (292)
T ss_dssp HHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHH
T ss_pred HHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHH
Confidence 88888875332221 14666777788888888888888887653 222 112344555554 345677
Q ss_pred HHHHHHHHHHh
Q 048749 380 TVYEYLDEMEQ 390 (536)
Q Consensus 380 ~A~~~~~~m~~ 390 (536)
+|+..|+++..
T Consensus 258 ~A~~~~~~~~~ 268 (292)
T 1qqe_A 258 EHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHTTSSC
T ss_pred HHHHHhccCCc
Confidence 77777766544
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.3e-08 Score=91.09 Aligned_cols=95 Identities=9% Similarity=-0.057 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-C-CCHHHHH
Q 048749 155 GSNVFNAILDVLGRARRFVELIQVFDEMP--DLVN---EKTYGILLNRYAAAHMVEEAIGVFDRRKEFGE-L-DDLSAFQ 227 (536)
Q Consensus 155 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~-~~~~~~~ 227 (536)
+...+..+...+.+.|++++|...|+++. .+.+ ...+..+..+|.+.|++++|+..|++..+... . ....++.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 45556666666666666666666666665 2233 45666666666666666666666666665421 1 1133445
Q ss_pred HHHHHHHh--------cCCHHHHHHHHHHh
Q 048749 228 NLLLWLCR--------YKHVEVAETFFESE 249 (536)
Q Consensus 228 ~ll~~~~~--------~~~~~~a~~~~~~~ 249 (536)
.+..++.. .|++++|...|++.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~ 123 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLF 123 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHH
Confidence 55555555 66666666666654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.96 E-value=3.2e-08 Score=91.91 Aligned_cols=203 Identities=13% Similarity=0.032 Sum_probs=147.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCCHHH
Q 048749 135 DWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP----DLVN----EKTYGILLNRYAAAHMVEE 206 (536)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~li~~~~~~g~~~~ 206 (536)
+++.|...|+.+ ...|...|++++|...|++.. ...+ ..+|+.+..+|...|++++
T Consensus 32 ~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~ 95 (292)
T 1qqe_A 32 KFEEAADLCVQA----------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVN 95 (292)
T ss_dssp HHHHHHHHHHHH----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHH----------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 377777777665 456778899999998888765 1111 4678999999999999999
Q ss_pred HHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhc-CCHHHHHHHHHHhcCCCCC--C----HHHHHHHHHHHHhcCCHH
Q 048749 207 AIGVFDRRKEFGEL-DD----LSAFQNLLLWLCRY-KHVEVAETFFESEKNEFGY--D----IKTMNIILNGWCVLGNVY 274 (536)
Q Consensus 207 A~~~~~~m~~~g~~-~~----~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~--~----~~~~~~li~~~~~~g~~~ 274 (536)
|+..|++..+.... .+ ..++..+...|... |++++|...|++...-.+. + ..+++.+...|.+.|+++
T Consensus 96 A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 175 (292)
T 1qqe_A 96 AVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYI 175 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHH
Confidence 99999887653211 11 45788888999996 9999999999884221111 1 456888999999999999
Q ss_pred HHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCH------hhHHHHHHHHH--hc
Q 048749 275 EAKRFWKDIIKSKCEPDS------VTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDV------VTCNCIIDALC--FK 340 (536)
Q Consensus 275 ~A~~~~~~m~~~g~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~------~~~~~li~~~~--~~ 340 (536)
+|+..|++..+....... ..|..+..++...|++++|...|++..+. .|+. ..+..++.+|. ..
T Consensus 176 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~ 253 (292)
T 1qqe_A 176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDS 253 (292)
T ss_dssp HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCH
Confidence 999999999886432221 15677888899999999999999998763 3321 23445566664 45
Q ss_pred CChHHHHHHHHHHHH
Q 048749 341 KRIPEALEVLREMKN 355 (536)
Q Consensus 341 g~~~~A~~~~~~m~~ 355 (536)
+++++|+..|+.+..
T Consensus 254 ~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 254 EQLSEHCKEFDNFMR 268 (292)
T ss_dssp TTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHhccCCc
Confidence 678888888876654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.94 E-value=4.9e-08 Score=85.55 Aligned_cols=110 Identities=12% Similarity=0.114 Sum_probs=49.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH----------------HHHHHHhcCCHHHHHHHHHHhcCCCC
Q 048749 191 YGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQN----------------LLLWLCRYKHVEVAETFFESEKNEFG 254 (536)
Q Consensus 191 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~----------------ll~~~~~~~~~~~a~~~~~~~~~~~~ 254 (536)
+-.....+...|++++|+..|++..+.. +.+...+.. +..++.+.|++++|...|++.....+
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 85 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP 85 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence 3334445566677777777776666543 112223322 34444444444444444444322223
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048749 255 YDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNAL 302 (536)
Q Consensus 255 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 302 (536)
.+...+..+...|...|++++|...|++..+.. +-+..+|..+...|
T Consensus 86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYY 132 (208)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 344444444444444444444444444444432 22333444444443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.3e-07 Score=86.10 Aligned_cols=187 Identities=9% Similarity=-0.069 Sum_probs=105.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhcCCC---CCCHHH
Q 048749 186 VNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDD---LSAFQNLLLWLCRYKHVEVAETFFESEKNEF---GYDIKT 259 (536)
Q Consensus 186 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~ 259 (536)
.+...+-.+...+.+.|++++|++.|+++.+.. +.+ ...+..+..++.+.|++++|...|+...... +....+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 445555666666666666666666666666543 222 4455556666666666666666666632211 122344
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHH
Q 048749 260 MNIILNGWCV--------LGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCN 331 (536)
Q Consensus 260 ~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 331 (536)
+..+..++.. .|++++|...|+++.+.. +-+...+..+.. +..+... -...+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~--------------~~~~~~~----~~~~~~ 152 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQK--------------IRELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHH--------------HHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHH--------------HHHHHHH----HHHHHH
Confidence 5555555555 666666666666665542 111111111100 0000000 001134
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcC
Q 048749 332 CIIDALCFKKRIPEALEVLREMKNRGCLP--NVTTYNSLIKHLCKI----------KRMETVYEYLDEMEQKN 392 (536)
Q Consensus 332 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~----------~~~~~A~~~~~~m~~~~ 392 (536)
.+...|.+.|++++|+..|+++.+..... ....+..+..+|... |++++|...|+++.+..
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 56677888889999998888887653221 245666777777765 88888999998888765
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.91 E-value=4e-08 Score=86.12 Aligned_cols=124 Identities=7% Similarity=-0.067 Sum_probs=57.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC-
Q 048749 194 LLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGN- 272 (536)
Q Consensus 194 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~- 272 (536)
+..+|.+.|++++|+..|++..+.. +.+...+..+...+...|++++|...|++....-+.+..+|..+...|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~ 138 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQ 138 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHH
Confidence 5555555555555555555555543 33455555555555555555555555555433234455555555555543332
Q ss_pred -HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 048749 273 -VYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWE 320 (536)
Q Consensus 273 -~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 320 (536)
.+.+...++.... ..|....+.....++...|++++|...|++..+
T Consensus 139 ~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 139 EKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 2233333333321 111112222233334445555555555555554
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.4e-06 Score=80.40 Aligned_cols=218 Identities=10% Similarity=0.003 Sum_probs=122.1
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccC--CHHHHHHHHHhCC--CCCCHHHHHHHHHHH----Hhc---CC
Q 048749 135 DWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRAR--RFVELIQVFDEMP--DLVNEKTYGILLNRY----AAA---HM 203 (536)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~--~~~~~~~~~~li~~~----~~~---g~ 203 (536)
..+.|++.++.++..+ +-+..+|+.--.++...| +++++++.++.+. .+.+..+|+.--..+ ... ++
T Consensus 48 ~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 48 YSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCC
Confidence 4456777777776653 445566777766666666 6666666666665 555555665544444 333 45
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHH
Q 048749 204 VEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVY--EAKRFWK 281 (536)
Q Consensus 204 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~ 281 (536)
+++++++++++.+.. +- +..+|+.-.-.+.+.|.++ ++++.++
T Consensus 126 ~~~EL~~~~~~l~~~-pk----------------------------------ny~aW~~R~~vl~~l~~~~~~~EL~~~~ 170 (306)
T 3dra_A 126 PYREFDILEAMLSSD-PK----------------------------------NHHVWSYRKWLVDTFDLHNDAKELSFVD 170 (306)
T ss_dssp THHHHHHHHHHHHHC-TT----------------------------------CHHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CC----------------------------------CHHHHHHHHHHHHHhcccChHHHHHHHH
Confidence 555555555555443 33 4444444444444444444 5555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCC------HhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHH-HHHHHHHHH
Q 048749 282 DIIKSKCEPDSVTYATFVNALTKKGK------LGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPE-ALEVLREMK 354 (536)
Q Consensus 282 ~m~~~g~~~~~~~~~~li~~~~~~g~------~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~ 354 (536)
.+++.. +-|...|+.-...+.+.+. ++++++.++.+..... -|...|+.+-..+.+.|+... +.++..++.
T Consensus 171 ~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~ 248 (306)
T 3dra_A 171 KVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFV 248 (306)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTE
T ss_pred HHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 555544 3355555554444444444 5666666666666532 255666666666666665333 334444443
Q ss_pred HCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 048749 355 NRG--CLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQK 391 (536)
Q Consensus 355 ~~g--~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 391 (536)
+.+ -..+...+..+...|.+.|+.++|.++++.+.++
T Consensus 249 ~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~ 287 (306)
T 3dra_A 249 DLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSK 287 (306)
T ss_dssp EGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 322 1235666677777777777777777777777653
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.89 E-value=2.9e-08 Score=84.42 Aligned_cols=159 Identities=12% Similarity=0.004 Sum_probs=86.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HH
Q 048749 158 VFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLW-LC 234 (536)
Q Consensus 158 ~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~-~~ 234 (536)
.+..+...+.+.|++++|...|++.. .+.+...|..+...+...|++++|+..|++..+.. |+...+..+... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 34556666777777777777777776 55666777777777777777777777777765543 243332221111 11
Q ss_pred hcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHH
Q 048749 235 RYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEP-DSVTYATFVNALTKKGKLGTALR 313 (536)
Q Consensus 235 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~ 313 (536)
..+....|...+++.....+.+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|..
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 11111223444444322223345555555555555555555555555555443211 23345555555555555555555
Q ss_pred HHHHH
Q 048749 314 LFQAM 318 (536)
Q Consensus 314 ~~~~m 318 (536)
.|++.
T Consensus 166 ~y~~a 170 (176)
T 2r5s_A 166 KYRRQ 170 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.7e-08 Score=105.30 Aligned_cols=170 Identities=10% Similarity=-0.038 Sum_probs=93.4
Q ss_pred HccCCHHHHHHHHHhCC----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 048749 167 GRARRFVELIQVFDEMP----------DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRY 236 (536)
Q Consensus 167 ~~~g~~~~A~~~~~~~~----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 236 (536)
...|++++|++.|++.. .+.+...|..+...+.+.|++++|++.|++..+.. +.+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 45555555555555432 23444555555666666666666666666655543 34455555555666666
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 048749 237 KHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQ 316 (536)
Q Consensus 237 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 316 (536)
|++++|...|++.....+.+...|..+..+|.+.|++++ ++.|++..+.+ +-+...|..+..++.+.|++++|++.|+
T Consensus 481 g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 666666666665432224455556666666666666666 66666665544 3345566666666666666666666666
Q ss_pred HHHHcCCCCC-HhhHHHHHHHHHhcC
Q 048749 317 AMWEKGRKPD-VVTCNCIIDALCFKK 341 (536)
Q Consensus 317 ~m~~~g~~p~-~~~~~~li~~~~~~g 341 (536)
+..+. .|+ ...+..+..++...+
T Consensus 559 ~al~l--~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 559 EVPPT--SRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp TSCTT--STTHHHHHHHHHHHTC---
T ss_pred hhccc--CcccHHHHHHHHHHHHccC
Confidence 55543 232 344444555544433
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.86 E-value=3.6e-08 Score=102.89 Aligned_cols=173 Identities=9% Similarity=0.048 Sum_probs=134.4
Q ss_pred HhcCCHHHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 048749 199 AAAHMVEEAIGVFDRRK--------EFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVL 270 (536)
Q Consensus 199 ~~~g~~~~A~~~~~~m~--------~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 270 (536)
...|++++|++.|++.. +.. +.+...+..+..++.+.|++++|...|++.....+.+...|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67899999999999887 332 456677888888899999999999999886544466788888898999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHH
Q 048749 271 GNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVL 350 (536)
Q Consensus 271 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 350 (536)
|++++|...|++..+.. +-+...|..+..++.+.|++++ ++.|++..+.. +.+...|..+..++.+.|++++|++.|
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999988765 3456778888888999999999 99998888753 235677888888899999999999999
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 048749 351 REMKNRGCLPN-VTTYNSLIKHLCKIKR 377 (536)
Q Consensus 351 ~~m~~~g~~p~-~~~~~~li~~~~~~~~ 377 (536)
++..+. .|+ ...|..+..++...++
T Consensus 558 ~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTT--STTHHHHHHHHHHHTC----
T ss_pred Hhhccc--CcccHHHHHHHHHHHHccCC
Confidence 888765 344 5566666667655444
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.84 E-value=4.4e-06 Score=83.18 Aligned_cols=338 Identities=9% Similarity=0.014 Sum_probs=214.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCC-HHHHHHHHHhCC-----CCCCHHHHHHHHHHHH----hcCC
Q 048749 134 FDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARR-FVELIQVFDEMP-----DLVNEKTYGILLNRYA----AAHM 203 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~-----~~~~~~~~~~li~~~~----~~g~ 203 (536)
++++.+..+|+.+... .|+...|...++...+.+. .+....+|+... +..+...|...+..+. .+++
T Consensus 28 ~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~ 104 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR 104 (493)
T ss_dssp TCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred CCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH
Confidence 6899999999999874 4689999998888877663 345566666644 3467788888887654 3467
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------------cCCHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHh
Q 048749 204 VEEAIGVFDRRKEFGELDDLSAFQNLLLWLCR-------------YKHVEVAETFFESEKNEFG-YDIKTMNIILNGWCV 269 (536)
Q Consensus 204 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~-------------~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~ 269 (536)
.+.+.++|++.+......-...|......-.. .+.+..|..+++......+ .+...|...+.--..
T Consensus 105 ~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~ 184 (493)
T 2uy1_A 105 IEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEME 184 (493)
T ss_dssp HHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhc
Confidence 88899999998874221112223222221111 1123334444444321111 144466665554322
Q ss_pred c--CC-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC
Q 048749 270 L--GN-----VYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKR 342 (536)
Q Consensus 270 ~--g~-----~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 342 (536)
. |- .+.+..+|+++.... +.+...|...+.-+.+.|+.+.|..+|++.... +.+...+. .|....+
T Consensus 185 ~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e 257 (493)
T 2uy1_A 185 NGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMD 257 (493)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTT
T ss_pred CCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcc
Confidence 1 11 345677898888754 556788888888889999999999999999987 33332222 2333222
Q ss_pred hHHHHHHHHHHHHC---------CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHH--HHHH-
Q 048749 343 IPEALEVLREMKNR---------GCLP---NVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFN--YLLK- 407 (536)
Q Consensus 343 ~~~A~~~~~~m~~~---------g~~p---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~--~ll~- 407 (536)
.++. ++.+.+. +..+ ....|...+....+.++.+.|..+|... ... ..+...|. +.+.
T Consensus 258 ~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~---~~~~~v~i~~A~lE~ 330 (493)
T 2uy1_A 258 EEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE---GVGPHVFIYCAFIEY 330 (493)
T ss_dssp CTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS---CCCHHHHHHHHHHHH
T ss_pred hhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC---CCChHHHHHHHHHHH
Confidence 2222 2322211 0001 1345666677777788899999999999 322 12333333 3232
Q ss_pred hcC-CCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048749 408 SLK-KPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDAL 486 (536)
Q Consensus 408 ~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 486 (536)
.++ ..+.|..+++...+.- +-+...+...++...+.|+.+.|..+|+.+. .....|...+.--...|+.+.+.
T Consensus 331 ~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r 404 (493)
T 2uy1_A 331 YATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFR 404 (493)
T ss_dssp HHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHH
Confidence 234 4778899999887742 2345567778888888999999999999973 25778888888778889999999
Q ss_pred HHHHHHHH
Q 048749 487 SYFHEMRL 494 (536)
Q Consensus 487 ~~~~~m~~ 494 (536)
.+++++..
T Consensus 405 ~v~~~~~~ 412 (493)
T 2uy1_A 405 ELVDQKMD 412 (493)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98988874
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.83 E-value=9.9e-08 Score=81.07 Aligned_cols=158 Identities=11% Similarity=-0.007 Sum_probs=67.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHH-HHhc
Q 048749 192 GILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNG-WCVL 270 (536)
Q Consensus 192 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~-~~~~ 270 (536)
..+...+.+.|++++|+..|++..+.. +.+...+..+...+.+.|++++|...++......+ +...+..+... +...
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhh
Confidence 334445555555555555555544432 33444555555555555555555555555322212 33222211111 1111
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC-CHhhHHHHHHHHHhcCChHHHHHH
Q 048749 271 GNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKP-DVVTCNCIIDALCFKKRIPEALEV 349 (536)
Q Consensus 271 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~ 349 (536)
+...+|...+++..+.. +-+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|...
T Consensus 88 ~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 88 AAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred cccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 11122344444444332 2234444444444444455555554444444432111 123444444444444444444444
Q ss_pred HHH
Q 048749 350 LRE 352 (536)
Q Consensus 350 ~~~ 352 (536)
|++
T Consensus 167 y~~ 169 (176)
T 2r5s_A 167 YRR 169 (176)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=6e-08 Score=89.72 Aligned_cols=161 Identities=12% Similarity=0.024 Sum_probs=70.6
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHH
Q 048749 155 GSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQN-LLL 231 (536)
Q Consensus 155 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~-ll~ 231 (536)
+...+..+...+.+.|++++|...|++.. .+.+...+..+...+.+.|++++|++.+++..... |+...... ...
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~~ 193 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHHH
Confidence 34444455555555555555555555544 44445555555555555555555555555544332 23221111 111
Q ss_pred HHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHhH
Q 048749 232 WLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCE-PDSVTYATFVNALTKKGKLGT 310 (536)
Q Consensus 232 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~ 310 (536)
.+.+.++.+.|...+++.....+.+...+..+...|...|++++|...|+++.+.... .+...+..++..+...|+.++
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 2333334444444444432222334444444444444444444444444444443211 012334444444444444444
Q ss_pred HHHHHHH
Q 048749 311 ALRLFQA 317 (536)
Q Consensus 311 a~~~~~~ 317 (536)
|...|++
T Consensus 274 a~~~~r~ 280 (287)
T 3qou_A 274 LASXYRR 280 (287)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.82 E-value=3.1e-07 Score=80.63 Aligned_cols=175 Identities=10% Similarity=0.004 Sum_probs=101.7
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHH
Q 048749 138 AAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAH----MVEEAIGVFDR 213 (536)
Q Consensus 138 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~ 213 (536)
+|++.|+.+.+.+ ++.++..+..+|...+++++|.+.|++.....+...+..+...|.. + ++++|++.|++
T Consensus 4 eA~~~~~~aa~~g----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 4 EPGSQYQQQAEAG----DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp CTTHHHHHHHHTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHCC----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 3555666666554 6667777777777777777777777776644556666666666666 5 67777777777
Q ss_pred HHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhcCCCC--CCHHHHHHHHHHHHh----cCCHHHHHHHHHHH
Q 048749 214 RKEFGELDDLSAFQNLLLWLCR----YKHVEVAETFFESEKNEFG--YDIKTMNIILNGWCV----LGNVYEAKRFWKDI 283 (536)
Q Consensus 214 m~~~g~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~--~~~~~~~~li~~~~~----~g~~~~A~~~~~~m 283 (536)
..+.| +..++..|...|.. .+++++|..+|++....-+ .+...+..|...|.. .+++++|..+|++.
T Consensus 79 A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 79 AVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 66543 45555555555554 5566666666666432211 014555566666655 55666666666666
Q ss_pred HHCCCCCCHHHHHHHHHHHHhc-C-----CHhHHHHHHHHHHHcC
Q 048749 284 IKSKCEPDSVTYATFVNALTKK-G-----KLGTALRLFQAMWEKG 322 (536)
Q Consensus 284 ~~~g~~~~~~~~~~li~~~~~~-g-----~~~~a~~~~~~m~~~g 322 (536)
.+.+ .+...+..|...|... | ++++|..+|+...+.|
T Consensus 156 ~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 156 SSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 5541 2223444444444432 2 5566666665555544
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=2.2e-07 Score=85.83 Aligned_cols=177 Identities=11% Similarity=0.002 Sum_probs=126.7
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCC
Q 048749 174 ELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEF 253 (536)
Q Consensus 174 ~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 253 (536)
...+.++... +.+...+..+...+.+.|++++|++.|++..+.. +.+...+..+...+.+.|++++|...++.+...
T Consensus 104 ~l~~~l~~~l-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~- 180 (287)
T 3qou_A 104 AIRALLDXVL-PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ- 180 (287)
T ss_dssp HHHHHHHHHS-CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-
T ss_pred HHHHHHHHHc-CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-
Confidence 3344444433 3455677778888888999999999999888765 556778888888888999999999888886443
Q ss_pred CCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC-CCHhhHH
Q 048749 254 GYDIKTM-NIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRK-PDVVTCN 331 (536)
Q Consensus 254 ~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~ 331 (536)
.|+.... ......+...++.+.|...+++..+.. +.+...+..+...+...|++++|+..|.++.+.... .+...+.
T Consensus 181 ~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~ 259 (287)
T 3qou_A 181 DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRX 259 (287)
T ss_dssp GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHH
T ss_pred hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHH
Confidence 2344332 223333566777777888888877765 456777888888888888888888888888875322 1255677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH
Q 048749 332 CIIDALCFKKRIPEALEVLREMK 354 (536)
Q Consensus 332 ~li~~~~~~g~~~~A~~~~~~m~ 354 (536)
.++..+...|+.++|...|++..
T Consensus 260 ~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 260 TFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcHHHHHHHHH
Confidence 88888888888888887777654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.7e-06 Score=79.80 Aligned_cols=207 Identities=11% Similarity=0.105 Sum_probs=126.4
Q ss_pred HHHHhhcCCCCCHHHHHH-HHHhcc-CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH----Hcc---CCHHHHHHHHH
Q 048749 110 EKALNQCELTLTDDLIVN-VINRYR-FDWEAAYTFFKWVSREGDYSPGSNVFNAILDVL----GRA---RRFVELIQVFD 180 (536)
Q Consensus 110 ~~~l~~~~~~~~~~~~~~-~l~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~----~~~---g~~~~A~~~~~ 180 (536)
.++|...+...+.-..-+ +|...+ .+++.++++++.+.... +-+..+|+.-..++ .+. +++++++.+++
T Consensus 57 ~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n--Pk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~ 134 (306)
T 3dra_A 57 ELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN--EKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILE 134 (306)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC--TTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHH
T ss_pred HHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC--cccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHH
Confidence 344444444443333333 444444 49999999999999874 66778888877777 555 78999999999
Q ss_pred hCC--CCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHhc
Q 048749 181 EMP--DLVNEKTYGILLNRYAAAHMVE--EAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKH------VEVAETFFESEK 250 (536)
Q Consensus 181 ~~~--~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~------~~~a~~~~~~~~ 250 (536)
++. .+.+-.+|+.-.-.+.+.|.++ ++++.++++.+.. +-|..+|+.-...+.+.+. ++++.+.++...
T Consensus 135 ~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI 213 (306)
T 3dra_A 135 AMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKI 213 (306)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHH
Confidence 998 8899999999998899999888 9999999999876 5667777766555555554 444444444432
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 048749 251 NEFGYDIKTMNIILNGWCVLGNVYE-AKRFWKDIIKSK--CEPDSVTYATFVNALTKKGKLGTALRLFQAMW 319 (536)
Q Consensus 251 ~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 319 (536)
...+-|..+|+-+-..+.+.|+... +..+..++.+.+ -..+...+..+...|.+.|+.++|.++++.+.
T Consensus 214 ~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 214 VKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 2223444555544444444444222 222333322211 11233444444444444444444444444443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.2e-07 Score=97.13 Aligned_cols=161 Identities=9% Similarity=-0.103 Sum_probs=120.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048749 134 FDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVF 211 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~ 211 (536)
++++.|++.|+.+.+.. +.+...|..+...|.+.|++++|.+.|++.. .+.+...|..+...|...|++++|++.|
T Consensus 3 g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 58899999999988763 5578889999999999999999999999876 6677889999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCC
Q 048749 212 DRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVL---GNVYEAKRFWKDIIKSKC 288 (536)
Q Consensus 212 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~ 288 (536)
++..+.. +.+...+..+..++.+.|++++|.+.+++.....+.+...+..+...+... |+.++|.+.+++..+.+
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~- 158 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG- 158 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT-
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC-
Confidence 9998875 556788899999999999999999999986444466788899999999999 99999999999998875
Q ss_pred CCCHHHHHHH
Q 048749 289 EPDSVTYATF 298 (536)
Q Consensus 289 ~~~~~~~~~l 298 (536)
+.+...|..+
T Consensus 159 p~~~~~~~~l 168 (568)
T 2vsy_A 159 VGAVEPFAFL 168 (568)
T ss_dssp CCCSCHHHHT
T ss_pred CcccChHHHh
Confidence 2333444433
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.5e-08 Score=83.55 Aligned_cols=135 Identities=10% Similarity=-0.001 Sum_probs=66.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048749 133 RFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGV 210 (536)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~ 210 (536)
+++++.|+..++.+.... +.+...+..+..+|.+.|++++|++.|++.. .+.+..+|..+..+|...|++++|+..
T Consensus 10 ~~~~e~ai~~~~~a~~~~--p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~ 87 (150)
T 4ga2_A 10 KADVERYIASVQGSTPSP--RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVEC 87 (150)
T ss_dssp HHHHHHHHHHHHHHSCSH--HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cChHHHHHHHHHHhcccC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHH
Confidence 345555555555554431 2223344455555556666666666555554 445555555555555555666666555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHhcCCCCCCHHHHHHHHHHHHhc
Q 048749 211 FDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETF-FESEKNEFGYDIKTMNIILNGWCVL 270 (536)
Q Consensus 211 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~li~~~~~~ 270 (536)
|++..+.. +-+..++..+...+.+.|+.++|.+. +++..+-.|.+..+|......+...
T Consensus 88 ~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~ 147 (150)
T 4ga2_A 88 YRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCE 147 (150)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 55555543 33344555555555555554443332 2332222233444444444443333
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=7.4e-08 Score=98.61 Aligned_cols=149 Identities=7% Similarity=-0.100 Sum_probs=62.4
Q ss_pred CCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048749 170 RRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFE 247 (536)
Q Consensus 170 g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 247 (536)
|++++|.+.|++.. .+.+...|..+...+...|++++|++.|++..+.. +.+...+..+..++...|++++|...++
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 34444444444443 33344445555555555555555555555544432 2334444444455555555555555554
Q ss_pred HhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHhHHHHHHHHHHH
Q 048749 248 SEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKK---GKLGTALRLFQAMWE 320 (536)
Q Consensus 248 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~ 320 (536)
+.....+.+...+..+...|.+.|++++|.+.|++..+.. +.+...+..+...+... |+.++|.+.+++..+
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 4322223344444555555555555555555555444432 22344444444444444 455555555554444
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.80 E-value=3.4e-07 Score=81.24 Aligned_cols=182 Identities=11% Similarity=-0.005 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCH-HHHHH
Q 048749 156 SNVFNAILDVLGRARRFVELIQVFDEMP--DLVN---EKTYGILLNRYAAAHMVEEAIGVFDRRKEFGEL-DDL-SAFQN 228 (536)
Q Consensus 156 ~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~-~~~~~ 228 (536)
...+..+...+.+.|++++|+..|+++. .+.+ ...+..+..+|.+.|++++|++.|++..+..-. +.. .++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 3444555555666666666666666654 1111 245555666666666666666666666554311 111 12222
Q ss_pred HHHHHHh------------------cCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 048749 229 LLLWLCR------------------YKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEP 290 (536)
Q Consensus 229 ll~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 290 (536)
+..++.+ .|+.++|...|+.+....+.+..++.+..... .+...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~----------~~~~~~~------ 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLV----------FLKDRLA------ 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHH----------HHHHHHH------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHH----------HHHHHHH------
Confidence 3333322 34555555555554433333332222111100 0000000
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC----HhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048749 291 DSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPD----VVTCNCIIDALCFKKRIPEALEVLREMKNRG 357 (536)
Q Consensus 291 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 357 (536)
.....+...|.+.|++++|+..|+.+.+.. |+ ...+..+..+|.+.|+.++|.+.++.+...+
T Consensus 148 --~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 --KYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred --HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 011245567778888888888888887752 22 2456777788888888888888888877654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=1.7e-08 Score=83.23 Aligned_cols=110 Identities=10% Similarity=-0.100 Sum_probs=51.3
Q ss_pred HHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048749 165 VLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVA 242 (536)
Q Consensus 165 ~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a 242 (536)
++...|++++|+..++... .+.+...+-.+...|.+.|++++|++.|++.++.. +.+..+|..+..++.+.|++++|
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHH
Confidence 3344455555555555544 11122233445555555555555555555555443 33444455555555555555555
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048749 243 ETFFESEKNEFGYDIKTMNIILNGWCVLGNVYE 275 (536)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 275 (536)
...|+......+.+..+|..+...|.+.|++++
T Consensus 85 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 117 (150)
T 4ga2_A 85 VECYRRSVELNPTQKDLVLKIAELLCKNDVTDG 117 (150)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSS
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Confidence 555544322223344444444444544444443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.79 E-value=9.2e-07 Score=77.58 Aligned_cols=178 Identities=11% Similarity=0.089 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC----ChHHHHHHH
Q 048749 275 EAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKK----RIPEALEVL 350 (536)
Q Consensus 275 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----~~~~A~~~~ 350 (536)
+|.+.|++..+.| +..++..+...|...+++++|++.|++..+.| +...+..+...|.. + ++++|++.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4666777777654 56677777777777888888888888887764 45666666666766 5 788888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCC
Q 048749 351 REMKNRGCLPNVTTYNSLIKHLCK----IKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNG 426 (536)
Q Consensus 351 ~~m~~~g~~p~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~ 426 (536)
++..+.| +...+..|-..|.. .+++++|+++|++..+.+ |..
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~----~~~--------------------------- 122 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS----ESD--------------------------- 122 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST----TSH---------------------------
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC----CCc---------------------------
Confidence 8887764 56677777777766 778888888888887665 100
Q ss_pred CCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCC
Q 048749 427 CKMSTDTYNVILKLYVN----WDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDK-G-----RLEDALSYFHEMRLKG 496 (536)
Q Consensus 427 ~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~g 496 (536)
.+...+..|...|.. .++.++|...|++..+. ..+...+..|-..|... | +.++|..+|++..+.|
T Consensus 123 --~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 123 --AAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp --HHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred --chHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 014566666777766 77888999999888876 23455666676777653 3 8899999999888776
Q ss_pred C
Q 048749 497 M 497 (536)
Q Consensus 497 ~ 497 (536)
.
T Consensus 199 ~ 199 (212)
T 3rjv_A 199 F 199 (212)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.79 E-value=6.2e-07 Score=79.54 Aligned_cols=187 Identities=5% Similarity=-0.119 Sum_probs=122.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCH---HHHH
Q 048749 187 NEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGEL-D-DLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDI---KTMN 261 (536)
Q Consensus 187 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~ 261 (536)
+...+-.+...+.+.|++++|+..|+++.+.... | ....+..+..++.+.|++++|...|++.....+.+. .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 4456666777888999999999999998875421 1 135677788889999999999999988533323222 2444
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC
Q 048749 262 IILNGWCV------------------LGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGR 323 (536)
Q Consensus 262 ~li~~~~~------------------~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 323 (536)
.+..++.. .|++++|...|+++++.. +-+..++...... + .+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l----~------~~~~~~~---- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRL----V------FLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHH----H------HHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHH----H------HHHHHHH----
Confidence 44444443 456666777776666542 1111222111110 0 0000000
Q ss_pred CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048749 324 KPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPN--VTTYNSLIKHLCKIKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 324 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 392 (536)
.....+...|.+.|++++|+..|+++.+...... ...+..+..+|.+.|+.++|.+.++.+...+
T Consensus 148 ----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 ----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 0113456788999999999999999987632211 2568889999999999999999999998876
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.68 E-value=3.4e-07 Score=85.58 Aligned_cols=225 Identities=10% Similarity=0.020 Sum_probs=144.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048749 134 FDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVFDR 213 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 213 (536)
++++.|.++++.+.+.. +.+ .+...+++++|...|++. ...|...|++++|.+.|.+
T Consensus 5 ~~~~eA~~~~~~a~k~~--~~~---------~~~~~~~~~~A~~~~~~a------------~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 5 QKISEAHEHIAKAEKYL--KTS---------FMKWKPDYDSAASEYAKA------------AVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp HHHHHHHHHHHHHHHHH--CCC---------SSSCSCCHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHc--ccc---------ccCCCCCHHHHHHHHHHH------------HHHHHHcCCHHHHHHHHHH
Confidence 46778888888776542 111 011146677777666553 4556677777777777776
Q ss_pred HHHcC----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhc----CCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048749 214 RKEFG----ELD-DLSAFQNLLLWLCRYKHVEVAETFFESEK----NEFGY--DIKTMNIILNGWCVLGNVYEAKRFWKD 282 (536)
Q Consensus 214 m~~~g----~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~ 282 (536)
..+.. -.. -..+|+.+...|.+.|++++|...|++.. ..-.+ -..+++.+...|.. |++++|+..|++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 65431 111 13467777778888888888888777621 11111 23567788888888 999999998888
Q ss_pred HHHCCC---CC--CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc----CCCCC-HhhHHHHHHHHHhcCChHHHHHHHHH
Q 048749 283 IIKSKC---EP--DSVTYATFVNALTKKGKLGTALRLFQAMWEK----GRKPD-VVTCNCIIDALCFKKRIPEALEVLRE 352 (536)
Q Consensus 283 m~~~g~---~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~ 352 (536)
..+... .+ ...++..+...|.+.|++++|+..|++..+. +..+. ...+..+..++...|++++|...|++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 765310 11 1457788888899999999999999888763 21111 23566777778888999999999998
Q ss_pred HHHCCCCC-C---HHHHHHHHHHHHhcCCHHHHHHH
Q 048749 353 MKNRGCLP-N---VTTYNSLIKHLCKIKRMETVYEY 384 (536)
Q Consensus 353 m~~~g~~p-~---~~~~~~li~~~~~~~~~~~A~~~ 384 (536)
.. ..... + ......++.++ ..|+.+.+.++
T Consensus 221 al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 221 SY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred Hh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 87 42110 1 22344555555 56777766663
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.68 E-value=2e-06 Score=75.33 Aligned_cols=128 Identities=9% Similarity=-0.046 Sum_probs=99.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 048749 158 VFNAILDVLGRARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYK 237 (536)
Q Consensus 158 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~ 237 (536)
.+..+...+.+.|++++|...|++.. .++...|..+...|...|++++|++.|++..+.. +.+...+..+..++...|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ-DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcc
Confidence 45566777888888899988888886 4577888888888888888888888888888765 556778888888888888
Q ss_pred CHHHHHHHHHHhcCCCCC----------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048749 238 HVEVAETFFESEKNEFGY----------------DIKTMNIILNGWCVLGNVYEAKRFWKDIIKSK 287 (536)
Q Consensus 238 ~~~~a~~~~~~~~~~~~~----------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 287 (536)
++++|...|+......+. ....+..+..+|.+.|++++|...|+...+..
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 888888888875332222 23677888888888888888888888887654
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=2.5e-05 Score=72.81 Aligned_cols=227 Identities=9% Similarity=0.033 Sum_probs=122.8
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhc-C-CHHHHH
Q 048749 134 FDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRAR-RFVELIQVFDEMP--DLVNEKTYGILLNRYAAA-H-MVEEAI 208 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~-g-~~~~A~ 208 (536)
...+.|+++++.++..+ +-+..+|+.--.++...| .++++++.++.+. .+.+..+|+.-...+... + ++++++
T Consensus 68 e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 68 EKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 34566777777777754 445666777777777776 4777777777766 566667777766666655 5 666777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 048749 209 GVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKC 288 (536)
Q Consensus 209 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 288 (536)
++++++.+.. +.|..+|+.-.-.+.+.|..+. .+ ...++++++.++++++..
T Consensus 146 ~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~-------------~~-------------~~~~~eELe~~~k~I~~d- 197 (349)
T 3q7a_A 146 EYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGR-------------IS-------------EAQWGSELDWCNEMLRVD- 197 (349)
T ss_dssp HHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTC-------------CC-------------HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhccccc-------------cc-------------hhhHHHHHHHHHHHHHhC-
Confidence 7777766544 4455555444333333332220 00 000124555555555443
Q ss_pred CCCHHHHHHHHHHHHhcCC-------HhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCh------------------
Q 048749 289 EPDSVTYATFVNALTKKGK-------LGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRI------------------ 343 (536)
Q Consensus 289 ~~~~~~~~~li~~~~~~g~-------~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~------------------ 343 (536)
+-|..+|+.....+.+.+. ++++++.++++.... +-|...|+.+-..+.+.|..
T Consensus 198 p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~ 276 (349)
T 3q7a_A 198 GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNP 276 (349)
T ss_dssp TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC-----
T ss_pred CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccc
Confidence 2344455554444444443 455555555555432 22444454444444444432
Q ss_pred --HHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 048749 344 --PEALEVLREMKNRG-----CLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQK 391 (536)
Q Consensus 344 --~~A~~~~~~m~~~g-----~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 391 (536)
....+...++...+ -.++...+..+...|...|+.++|.++++.+.++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 277 DIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp ---------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 11111111221111 1346777778888888888888888888887654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.63 E-value=2.4e-06 Score=74.73 Aligned_cols=127 Identities=11% Similarity=-0.149 Sum_probs=83.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 048749 191 YGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVL 270 (536)
Q Consensus 191 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 270 (536)
+..+...+...|++++|++.|++.. .|+..++..+...+.+.|++++|...++......+.+...+..+..+|...
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 4455566667777777777776653 456667777777777777777777777764333345666777777777777
Q ss_pred CCHHHHHHHHHHHHHCCCC--------------C-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 048749 271 GNVYEAKRFWKDIIKSKCE--------------P-DSVTYATFVNALTKKGKLGTALRLFQAMWEK 321 (536)
Q Consensus 271 g~~~~A~~~~~~m~~~g~~--------------~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 321 (536)
|++++|...|+...+.... | ....+..+..++...|++++|.+.|+...+.
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 7777777777777664311 0 1255666666677777777777777766664
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.62 E-value=0.0002 Score=71.22 Aligned_cols=357 Identities=8% Similarity=-0.055 Sum_probs=212.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCC-HHHHHHHHH
Q 048749 135 DWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP-DLVNEKTYGILLNRYAAAHM-VEEAIGVFD 212 (536)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~li~~~~~~g~-~~~A~~~~~ 212 (536)
+.+.|+.+|+.+...- |. |+++.+..+|++.. ..|+...|..-+....+.+. .+....+|+
T Consensus 10 ~i~~aR~vyer~l~~~---P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe 72 (493)
T 2uy1_A 10 ELSSPSAIMEHARRLY---MS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYE 72 (493)
T ss_dssp --CCHHHHHHHHHHHH---HT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHH
T ss_pred chHHHHHHHHHHHHHC---CC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 3666777777766531 22 88999999999988 66899999999988887774 456777888
Q ss_pred HHHHc-CC-CCCHHHHHHHHHHHH----hcCCHHHHHHHHHHhcCCCCCC--HHHHHHHHHHHH-------------hcC
Q 048749 213 RRKEF-GE-LDDLSAFQNLLLWLC----RYKHVEVAETFFESEKNEFGYD--IKTMNIILNGWC-------------VLG 271 (536)
Q Consensus 213 ~m~~~-g~-~~~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~--~~~~~~li~~~~-------------~~g 271 (536)
..... |. ..+...|...+..+. ..++.+.+..+|++... .++. ...|......-. ..+
T Consensus 73 ~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~-~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~ 151 (493)
T 2uy1_A 73 FTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ-TPMGSLSELWKDFENFELELNKITGKKIVGDTLP 151 (493)
T ss_dssp HHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh-ChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhH
Confidence 77653 53 346777877777654 34678889999999543 2221 122322222110 112
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--C-----HhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChH
Q 048749 272 NVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKG--K-----LGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIP 344 (536)
Q Consensus 272 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~-----~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 344 (536)
.+..|..+++.+...--..+...|...+.--...+ - .+.+..+|+++... .+.+...|...+..+.+.|+.+
T Consensus 152 ~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~ 230 (493)
T 2uy1_A 152 IFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKE 230 (493)
T ss_dssp HHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHH
Confidence 33344555544432100113345665555432221 1 34567889998886 4456778888888888999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-------CCCC---cHHHHHHHHHh---cCC
Q 048749 345 EALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNG-------SCLP---NEITFNYLLKS---LKK 411 (536)
Q Consensus 345 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-------~~~p---~~~~~~~ll~~---~~~ 411 (536)
+|..+|++.... +.+...|. .|+...+.++. ++.+.+... ...+ ....|...+.. .+.
T Consensus 231 ~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~ 301 (493)
T 2uy1_A 231 KAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRG 301 (493)
T ss_dssp HHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCC
Confidence 999999999887 33433332 23333222222 222222110 0001 11223333332 244
Q ss_pred CChHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048749 412 PEEVPWVLERMERNGCKMSTDTYNVILKLYVNW-DCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFH 490 (536)
Q Consensus 412 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 490 (536)
.+.|..+++.. +.. ..+...|......-... ++.+.|..+|+...+.. +-+...|...++-....|+.+.|..+|+
T Consensus 302 ~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~e 378 (493)
T 2uy1_A 302 LELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFK 378 (493)
T ss_dssp HHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 56777888887 321 23445554333333333 36999999999988752 2245567777887788899999999999
Q ss_pred HHHHCCCCCcHHHHHHHHHHHHhhhhhhhhhHHHHHh
Q 048749 491 EMRLKGMVPEPRTGILVNDMNIKLKERGEQGKKVIKL 527 (536)
Q Consensus 491 ~m~~~g~~p~~~t~~~l~~~~~~~~~~~~a~~~~~~~ 527 (536)
+.. .....+...+..-...|+.+.+.+.+.+.
T Consensus 379 r~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~ 410 (493)
T 2uy1_A 379 RLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQK 410 (493)
T ss_dssp HSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 873 13444666666666778777777766664
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.62 E-value=7.9e-06 Score=75.62 Aligned_cols=170 Identities=10% Similarity=0.019 Sum_probs=122.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCH----HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC-CC----Hhh
Q 048749 260 MNIILNGWCVLGNVYEAKRFWKDIIKSK-CEPDS----VTYATFVNALTKKGKLGTALRLFQAMWEKGRK-PD----VVT 329 (536)
Q Consensus 260 ~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~----~~~ 329 (536)
+...+..+...|++++|..++++..+.. ..|+. ..+..+...+...|++++|+..+++..+.... ++ ..+
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 3344677888999999999999987643 12221 12334666677778999999999999884322 22 236
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH----C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHH
Q 048749 330 CNCIIDALCFKKRIPEALEVLREMKN----R-GCLPN-VTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFN 403 (536)
Q Consensus 330 ~~~li~~~~~~g~~~~A~~~~~~m~~----~-g~~p~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~ 403 (536)
++.+...|...|++++|+..|+++.+ . +..+. ..+|..+...|.+.|++++|.+.+++..+..
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~----------- 226 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS----------- 226 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----------
Confidence 88899999999999999999998873 1 11222 3478888999999999999999999876532
Q ss_pred HHHHhcCCCChHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCC-hhHHHHHHHHHHH
Q 048749 404 YLLKSLKKPEEVPWVLERMERNGCKMS-TDTYNVILKLYVNWDC-EDKVRHTWEEMEK 459 (536)
Q Consensus 404 ~ll~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~-~~~A~~~~~~m~~ 459 (536)
.+.+..+. ..+|..+...|.+.|+ +++|.+.+++...
T Consensus 227 -------------------~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 227 -------------------CRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp -------------------HHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred -------------------HHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 11111222 5788888899999995 5899888887664
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.61 E-value=6.7e-06 Score=76.12 Aligned_cols=126 Identities=11% Similarity=0.008 Sum_probs=67.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHhcC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---C-CCCC--CHHHHH
Q 048749 229 LLLWLCRYKHVEVAETFFESEKN----EFGYD--IKTMNIILNGWCVLGNVYEAKRFWKDIIK---S-KCEP--DSVTYA 296 (536)
Q Consensus 229 ll~~~~~~~~~~~a~~~~~~~~~----~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~-g~~~--~~~~~~ 296 (536)
+...+...|++++|...++.... ...+. ..+++.+...|...|++++|...|++..+ . +..+ ...++.
T Consensus 121 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~ 200 (293)
T 2qfc_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHH
Confidence 33444555556666555555211 11111 33566666666666666666666666542 1 1011 114566
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcC----CCC-CHhhHHHHHHHHHhcCChHHH-HHHHHHHH
Q 048749 297 TFVNALTKKGKLGTALRLFQAMWEKG----RKP-DVVTCNCIIDALCFKKRIPEA-LEVLREMK 354 (536)
Q Consensus 297 ~li~~~~~~g~~~~a~~~~~~m~~~g----~~p-~~~~~~~li~~~~~~g~~~~A-~~~~~~m~ 354 (536)
.+...|...|++++|+..+++..+.. ... -..+|..+...|.+.|++++| ...+++..
T Consensus 201 nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 66666777777777777766655421 111 144566666677777777777 55565543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.61 E-value=1.7e-06 Score=72.18 Aligned_cols=126 Identities=18% Similarity=0.055 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 048749 190 TYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCV 269 (536)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 269 (536)
.|..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|...++......+.+...+..+...+..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34445555555555555555555555433 23344444555555555555555555554322223344455555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHhcCCHhHHHHHHHH
Q 048749 270 LGNVYEAKRFWKDIIKSKCEPDSVTYAT--FVNALTKKGKLGTALRLFQA 317 (536)
Q Consensus 270 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~--li~~~~~~g~~~~a~~~~~~ 317 (536)
.|++++|...|++..+.. +.+...+.. ++..+...|++++|++.+..
T Consensus 94 ~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEH 142 (166)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 555555555555554432 122223322 22224444555555555444
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=3.8e-05 Score=71.62 Aligned_cols=183 Identities=10% Similarity=0.095 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 048749 157 NVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAH-MVEEAIGVFDRRKEFGELDDLSAFQNLLLWL 233 (536)
Q Consensus 157 ~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 233 (536)
.+++.+-..+.+.+..++|+++++.+. .+.+..+|+.--..+...| .+++++++++.+.... +-+..+|+.-...+
T Consensus 55 ~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL 133 (349)
T 3q7a_A 55 DAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 344444445555556667777777776 6666667777666666666 3777777777666544 34444554444444
Q ss_pred Hhc-C-CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH---
Q 048749 234 CRY-K-HVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKL--- 308 (536)
Q Consensus 234 ~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~--- 308 (536)
.+. + +++ +++++++.+.+.. +.|..+|+.-.-.+.+.|.+
T Consensus 134 ~~l~~~~~~----------------------------------~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~ 178 (349)
T 3q7a_A 134 DRISPQDPV----------------------------------SEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRI 178 (349)
T ss_dssp HHHCCSCCH----------------------------------HHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCC
T ss_pred HHhcCCChH----------------------------------HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccccc
Confidence 333 3 344 4444444444333 23444444333333333333
Q ss_pred -----hHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC-------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048749 309 -----GTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKR-------IPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIK 376 (536)
Q Consensus 309 -----~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 376 (536)
.++++.++++.+.... |...|+.....+.+.+. ++++++.++++...... |...|+-+-..+.+.|
T Consensus 179 ~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 179 SEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFS 256 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred chhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcC
Confidence 3778888888776433 66777777777777665 56777777777665433 6677766655555554
Q ss_pred C
Q 048749 377 R 377 (536)
Q Consensus 377 ~ 377 (536)
+
T Consensus 257 ~ 257 (349)
T 3q7a_A 257 L 257 (349)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.58 E-value=2.5e-06 Score=67.03 Aligned_cols=96 Identities=16% Similarity=0.177 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 048749 189 KTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWC 268 (536)
Q Consensus 189 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 268 (536)
..|..+...+...|++++|++.|+++.+.. +.+..++..+...+.+.|++++|..+++.+....+.+..++..+...|.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 344444445555555555555555544432 2233444444444444444444444444432222333444444444444
Q ss_pred hcCCHHHHHHHHHHHHH
Q 048749 269 VLGNVYEAKRFWKDIIK 285 (536)
Q Consensus 269 ~~g~~~~A~~~~~~m~~ 285 (536)
..|++++|...|+++.+
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 45555555555544443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.58 E-value=5.5e-06 Score=76.68 Aligned_cols=129 Identities=12% Similarity=0.051 Sum_probs=80.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHHc-----CCCCC-HhhH
Q 048749 262 IILNGWCVLGNVYEAKRFWKDIIKSKC-EPD----SVTYATFVNALTKKGKLGTALRLFQAMWEK-----GRKPD-VVTC 330 (536)
Q Consensus 262 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~p~-~~~~ 330 (536)
.+...+...|++++|+..|++..+... .++ ..+++.+...|...|++++|+..|+++.+. +..+. ..++
T Consensus 120 ~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 199 (293)
T 3u3w_A 120 YVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVR 199 (293)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHH
Confidence 344455556667777777766665321 122 235666777777777777777777776631 11111 2356
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCC-HHHHHHHHHHHHh
Q 048749 331 NCIIDALCFKKRIPEALEVLREMKN----RGCLPN-VTTYNSLIKHLCKIKR-METVYEYLDEMEQ 390 (536)
Q Consensus 331 ~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~~~li~~~~~~~~-~~~A~~~~~~m~~ 390 (536)
..+...|.+.|++++|+..+++..+ .+..+. ..+|..+..+|.+.|+ +++|.+.+++...
T Consensus 200 ~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 200 YNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 7777778888888888888777643 222222 5677778888888884 5888888877654
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.57 E-value=1.7e-06 Score=72.21 Aligned_cols=128 Identities=12% Similarity=-0.022 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 048749 156 SNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWL 233 (536)
Q Consensus 156 ~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 233 (536)
...+..+...+...|++++|...|++.. .+.+..+|..+...+...|++++|++.|++..+.. +.+..++..+..++
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 4457777788888888888888888876 56678888888888888899999998888888765 45677888888888
Q ss_pred HhcCCHHHHHHHHHHhcCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHH
Q 048749 234 CRYKHVEVAETFFESEKNEFGYDIKTMNI--ILNGWCVLGNVYEAKRFWKDII 284 (536)
Q Consensus 234 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~m~ 284 (536)
...|++++|...+++.....+.+...+.. ++..+.+.|++++|...+....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 88899999998888854333445555533 3344777888899888887654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.2e-06 Score=81.87 Aligned_cols=197 Identities=13% Similarity=0.027 Sum_probs=134.6
Q ss_pred cCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048749 169 ARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFF 246 (536)
Q Consensus 169 ~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 246 (536)
.|++++|.+++++.. .... + +...+++++|...|.+. ...|...|++++|...|
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~ 59 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAY 59 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcccc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHH
Confidence 456667777766554 1110 0 11146677777776654 45677889999999888
Q ss_pred HHhc-----CCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHhHHHHH
Q 048749 247 ESEK-----NEFG-YDIKTMNIILNGWCVLGNVYEAKRFWKDIIKS----KCEPD--SVTYATFVNALTKKGKLGTALRL 314 (536)
Q Consensus 247 ~~~~-----~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~~--~~~~~~li~~~~~~g~~~~a~~~ 314 (536)
.+.. .+.. .-..+|+.+...|.+.|++++|+..|++..+. | .+. ..++..+...|.. |++++|+..
T Consensus 60 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 60 LQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 8731 1111 12457888888899999999999999887643 2 121 3567778888888 999999999
Q ss_pred HHHHHHcCCCC-----CHhhHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 048749 315 FQAMWEKGRKP-----DVVTCNCIIDALCFKKRIPEALEVLREMKNR----GCLPN-VTTYNSLIKHLCKIKRMETVYEY 384 (536)
Q Consensus 315 ~~~m~~~g~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~~~~~~A~~~ 384 (536)
|++..+..... ...++..+...|.+.|++++|+..|++..+. +..+. ...+..+..++...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 98877641110 1456788888899999999999999988652 21111 23566667777788999999999
Q ss_pred HHHHHhcC
Q 048749 385 LDEMEQKN 392 (536)
Q Consensus 385 ~~~m~~~~ 392 (536)
|++.. ..
T Consensus 218 ~~~al-~~ 224 (307)
T 2ifu_A 218 VRESY-SI 224 (307)
T ss_dssp HHHHT-TS
T ss_pred HHHHh-CC
Confidence 99987 54
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.55 E-value=7.5e-07 Score=81.99 Aligned_cols=196 Identities=12% Similarity=0.021 Sum_probs=130.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 048749 186 VNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILN 265 (536)
Q Consensus 186 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 265 (536)
.+...+..+...+...|++++|++.|++..+.. +.+...|..+..++.+.|++++|...++......+.+...+..+..
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 355677888888889999999999999888764 4477888888889999999999999999876655778888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHH
Q 048749 266 GWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPE 345 (536)
Q Consensus 266 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 345 (536)
+|...|++++|...|++..+.+. -+...+...+....+. .++.. +..........+......+.. + ..|+.++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAK-EQRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYLTR-L-IAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHH-HTTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHHHH-H-HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHHHH-H-HHHHHHH
Confidence 99999999999999988876421 0100111111111111 11111 222333334445444444432 2 3688899
Q ss_pred HHHHHHHHHHCCCCCCH-HHHHHHHHHHHhc-CCHHHHHHHHHHHHhc
Q 048749 346 ALEVLREMKNRGCLPNV-TTYNSLIKHLCKI-KRMETVYEYLDEMEQK 391 (536)
Q Consensus 346 A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~-~~~~~A~~~~~~m~~~ 391 (536)
|++.++...+. .|+. .....+-..+.+. +.+++|.++|.++.+.
T Consensus 154 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99988887765 4443 3333444444444 6688899999888664
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.53 E-value=2.3e-06 Score=67.22 Aligned_cols=113 Identities=14% Similarity=0.120 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 048749 156 SNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWL 233 (536)
Q Consensus 156 ~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 233 (536)
..++..+...+.+.|++++|.+.|+++. .+.+..++..+...+...|++++|+.+|+++.+.. +.+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 5678888888888999999998888876 55677888888888889999999999998888765 45677888888888
Q ss_pred HhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 048749 234 CRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCV 269 (536)
Q Consensus 234 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 269 (536)
...|++++|...++......+.+...+..+...+..
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 899999999988888544335566666666555543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.1e-05 Score=74.53 Aligned_cols=129 Identities=13% Similarity=0.051 Sum_probs=87.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHHc-CCCCC-----HhhH
Q 048749 262 IILNGWCVLGNVYEAKRFWKDIIKSKC---EPD--SVTYATFVNALTKKGKLGTALRLFQAMWEK-GRKPD-----VVTC 330 (536)
Q Consensus 262 ~li~~~~~~g~~~~A~~~~~~m~~~g~---~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~-----~~~~ 330 (536)
.+...+...|++++|+..+++..+... .+. ..+|+.+...|...|++++|+..|++..+. ...|+ ..++
T Consensus 120 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~ 199 (293)
T 2qfc_A 120 YVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVR 199 (293)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHH
Confidence 345556677888888888887765321 111 447778888888888888888888877632 01111 2477
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 048749 331 NCIIDALCFKKRIPEALEVLREMKNR----GCLP-NVTTYNSLIKHLCKIKRMETV-YEYLDEMEQ 390 (536)
Q Consensus 331 ~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~~~~~~A-~~~~~~m~~ 390 (536)
..+...|.+.|++++|+..+++..+. +... -..+|..+...|.+.|++++| ...+++...
T Consensus 200 ~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 200 YNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 77888888888888888888876532 1111 156777788888888888888 666766543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.53 E-value=1e-06 Score=76.37 Aligned_cols=155 Identities=8% Similarity=-0.036 Sum_probs=80.9
Q ss_pred cCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHhH
Q 048749 236 YKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKS----KCE-PDSVTYATFVNALTKKGKLGT 310 (536)
Q Consensus 236 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~ 310 (536)
.|++++|.++++.+.........++..+...|...|++++|...+++..+. +.. ....++..+...+...|++++
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 84 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDA 84 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 445555555333222211123445555555555566666666655555431 111 123445556666666666666
Q ss_pred HHHHHHHHHHc----CCCC--CHhhHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHH
Q 048749 311 ALRLFQAMWEK----GRKP--DVVTCNCIIDALCFKKRIPEALEVLREMKNR----GCLP-NVTTYNSLIKHLCKIKRME 379 (536)
Q Consensus 311 a~~~~~~m~~~----g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~~~~~ 379 (536)
|.+.+++..+. +-.+ ....+..+...+...|++++|...+++..+. +... -..++..+...+...|+++
T Consensus 85 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 164 (203)
T 3gw4_A 85 ARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLL 164 (203)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHH
Confidence 66666665543 1111 1234556666667777777777777665421 1110 1233456666777777777
Q ss_pred HHHHHHHHHHh
Q 048749 380 TVYEYLDEMEQ 390 (536)
Q Consensus 380 ~A~~~~~~m~~ 390 (536)
+|.+.+++..+
T Consensus 165 ~A~~~~~~al~ 175 (203)
T 3gw4_A 165 EAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777776654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=2.8e-06 Score=67.37 Aligned_cols=115 Identities=13% Similarity=-0.017 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 048749 190 TYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCV 269 (536)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 269 (536)
.|..+...+...|++++|++.|++..+.. +.+...+..+...+...|++++|...++......+.+...+..+...|..
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHH
Confidence 34444444445555555555555444432 22334444444444444444444444444222222334444444444444
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048749 270 LGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKG 306 (536)
Q Consensus 270 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 306 (536)
.|++++|...|++..+.. +.+...+..+..++...|
T Consensus 93 ~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLR 128 (131)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHh
Confidence 444444444444444332 223333444444443333
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.52 E-value=3.2e-06 Score=67.02 Aligned_cols=94 Identities=12% Similarity=-0.012 Sum_probs=40.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 048749 191 YGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVL 270 (536)
Q Consensus 191 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 270 (536)
+......|.+.|++++|++.|++.++.. +.+..+|..+..++.+.|++++|...+++....-+.+...|..+..+|...
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAM 94 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence 3444444444444444444444444432 233444444444444444444444444442221233344444444444444
Q ss_pred CCHHHHHHHHHHHHH
Q 048749 271 GNVYEAKRFWKDIIK 285 (536)
Q Consensus 271 g~~~~A~~~~~~m~~ 285 (536)
|++++|.+.|++..+
T Consensus 95 ~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 95 REWSKAQRAYEDALQ 109 (126)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 444444444444443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.52 E-value=2.6e-06 Score=76.76 Aligned_cols=124 Identities=8% Similarity=-0.133 Sum_probs=49.3
Q ss_pred HHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCC
Q 048749 230 LLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPD--SVTYATFVNALTKKGK 307 (536)
Q Consensus 230 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~ 307 (536)
...+...|++++|.++|+.+...-+-+. ....+...+.+.+++++|+..|+...... .|. ...+..+..++...|+
T Consensus 109 A~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~ 186 (282)
T 4f3v_A 109 AACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLAL 186 (282)
T ss_dssp HHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCCC
Confidence 3444445555555555544333212122 33333334444555555555444222110 000 1233344444444444
Q ss_pred HhHHHHHHHHHHHcCCCCC--HhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048749 308 LGTALRLFQAMWEKGRKPD--VVTCNCIIDALCFKKRIPEALEVLREMKN 355 (536)
Q Consensus 308 ~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 355 (536)
+++|++.|++.......|. .........++.+.|+.++|..+|+++..
T Consensus 187 ~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 187 FTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp HHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4444444444442211122 11223333334444444444444444443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.51 E-value=5.7e-06 Score=74.57 Aligned_cols=193 Identities=10% Similarity=-0.084 Sum_probs=143.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCHHHHHHH-------HHHHHccCCHHHHHHHHHhCCC-C-------CC----------
Q 048749 133 RFDWEAAYTFFKWVSREGDYSPGSNVFNAI-------LDVLGRARRFVELIQVFDEMPD-L-------VN---------- 187 (536)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~~~~-~-------~~---------- 187 (536)
.+++..|++.|..+.+.. +-....|+-+ ..++.+.++..++...+..-.. . .+
T Consensus 19 ~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred CCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 579999999999999974 5568889888 5777777777777666655441 0 11
Q ss_pred -----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCC--HHHH
Q 048749 188 -----EKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYD--IKTM 260 (536)
Q Consensus 188 -----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~ 260 (536)
...+-.....+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+.......|. ...+
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~ 174 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAG 174 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHH
Confidence 2344556788889999999999999888754 544355666678899999999999998643321221 3478
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHH
Q 048749 261 NIILNGWCVLGNVYEAKRFWKDIIKSKCEPD--SVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCN 331 (536)
Q Consensus 261 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 331 (536)
..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++... .|+...+.
T Consensus 175 ~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~~ 245 (282)
T 4f3v_A 175 VAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVAA 245 (282)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHH
Confidence 8889999999999999999999885433253 346667778899999999999999999985 34433333
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.49 E-value=2.3e-06 Score=67.87 Aligned_cols=108 Identities=8% Similarity=-0.013 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 048749 156 SNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWL 233 (536)
Q Consensus 156 ~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 233 (536)
...+......|.+.|++++|++.|++.. .+.+...|..+..+|.+.|++++|++.|++.++.. +.+...|..+..++
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 3456667777888888888888888766 66777788888888888888888888888877765 45677777788888
Q ss_pred HhcCCHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 048749 234 CRYKHVEVAETFFESEKNEFGYDIKTMNIIL 264 (536)
Q Consensus 234 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 264 (536)
...|++++|...|++..+-.|.+...+..|.
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~ 122 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVR 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHH
Confidence 8888888888888775433344555554443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.6e-06 Score=75.19 Aligned_cols=155 Identities=14% Similarity=0.029 Sum_probs=84.4
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC------CCCCCHHHHHHHHHHHHhcCCH
Q 048749 200 AAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKN------EFGYDIKTMNIILNGWCVLGNV 273 (536)
Q Consensus 200 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~li~~~~~~g~~ 273 (536)
..|++++|.+.++.+.. .......++..+...+...|++++|...+++... ..+....++..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 34555555553333222 1112334445555555555555555555554211 1112334566666677777777
Q ss_pred HHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-CCC----HhhHHHHHHHHHhcCC
Q 048749 274 YEAKRFWKDIIKS----KCEP--DSVTYATFVNALTKKGKLGTALRLFQAMWEKGR-KPD----VVTCNCIIDALCFKKR 342 (536)
Q Consensus 274 ~~A~~~~~~m~~~----g~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~ 342 (536)
++|...+++..+. +-.+ ....+..+...+...|++++|...+++..+... ..+ ..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 7777777665542 1111 134566667777777888888877777664210 111 2235667777888888
Q ss_pred hHHHHHHHHHHHH
Q 048749 343 IPEALEVLREMKN 355 (536)
Q Consensus 343 ~~~A~~~~~~m~~ 355 (536)
+++|.+.+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888876643
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.47 E-value=2.4e-06 Score=68.12 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=9.2
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHH
Q 048749 295 YATFVNALTKKGKLGTALRLFQAM 318 (536)
Q Consensus 295 ~~~li~~~~~~g~~~~a~~~~~~m 318 (536)
+..+..++...|++++|.+.|++.
T Consensus 87 ~~~la~~~~~~~~~~~A~~~~~~~ 110 (133)
T 2lni_A 87 YTRKAAALEAMKDYTKAMDVYQKA 110 (133)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 333333333333333333333333
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.46 E-value=2.5e-06 Score=67.62 Aligned_cols=118 Identities=8% Similarity=-0.015 Sum_probs=88.7
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048749 155 GSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLW 232 (536)
Q Consensus 155 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 232 (536)
+...+..+...+...|++++|...|++.. .+.+...|..+...+...|++++|++.+++..+.. +.+...+..+...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 45667777788888888888888888766 55677788888888888888888888888877754 4457777778888
Q ss_pred HHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH
Q 048749 233 LCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNV 273 (536)
Q Consensus 233 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 273 (536)
+...|++++|...++......+.+...+..+...+.+.|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 88888888888888875433355677777777777766653
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.44 E-value=6.3e-06 Score=65.57 Aligned_cols=119 Identities=13% Similarity=0.034 Sum_probs=68.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHH
Q 048749 255 YDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCII 334 (536)
Q Consensus 255 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 334 (536)
.+...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|++.+++..+.. +.+...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 345556666666666666666666666665543 2345556666666666666666666666666542 22455566666
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048749 335 DALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIK 376 (536)
Q Consensus 335 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 376 (536)
.++.+.|++++|.+.|++..+.... +...+..+...+.+.|
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence 6666666666666666666544211 2344445555554443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.9e-06 Score=72.93 Aligned_cols=117 Identities=5% Similarity=0.045 Sum_probs=52.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHH-HHhcCCH--HHHHH
Q 048749 202 HMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNG-WCVLGNV--YEAKR 278 (536)
Q Consensus 202 g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~--~~A~~ 278 (536)
|++++|++.+++..+.. +.+...+..+...+...|++++|...|+......+.+...+..+... |...|++ ++|..
T Consensus 24 ~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~ 102 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRA 102 (177)
T ss_dssp ---CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 44444444444444332 23344444444444444444444444444322222344444444444 4444554 55555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 048749 279 FWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWE 320 (536)
Q Consensus 279 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 320 (536)
.+++..+.. +.+...+..+...+...|++++|...|++..+
T Consensus 103 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 103 MIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 555554433 22344444455555555555555555555544
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.43 E-value=6.3e-07 Score=73.57 Aligned_cols=100 Identities=11% Similarity=-0.040 Sum_probs=61.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 048749 186 VNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILN 265 (536)
Q Consensus 186 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 265 (536)
.+...|..+...+.+.|++++|++.|++..+.. +.+...|..+..++...|++++|...|++...-.+.+...|..+..
T Consensus 34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~ 112 (151)
T 3gyz_A 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 344556666666667777777777777666654 4455666666666666666666666666643333445556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 048749 266 GWCVLGNVYEAKRFWKDIIKS 286 (536)
Q Consensus 266 ~~~~~g~~~~A~~~~~~m~~~ 286 (536)
+|.+.|++++|...|+...+.
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 666666666666666666554
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.42 E-value=6.7e-07 Score=82.30 Aligned_cols=192 Identities=13% Similarity=0.026 Sum_probs=118.0
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048749 155 GSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLW 232 (536)
Q Consensus 155 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 232 (536)
+...+..+...+.+.|++++|+..|++.. .+.+...|..+..+|.+.|++++|++.+++..+.. +.+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 55677778888888888888888888776 55677888888888888888888888888887754 4567778888888
Q ss_pred HHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 048749 233 LCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTAL 312 (536)
Q Consensus 233 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 312 (536)
+...|++++|...|+......+.+...+...+....+ ..++.. +........+.+......+ ..+ ..|+.++|+
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~ 155 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYL-TRL-IAAEREREL 155 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHH-HHH-HHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHH-HHH-HHHHHHHHH
Confidence 8888888888888877421101010011111111111 111111 2222333334444443333 222 268888888
Q ss_pred HHHHHHHHcCCCCCHh-hHHHHHHHHHhc-CChHHHHHHHHHHHH
Q 048749 313 RLFQAMWEKGRKPDVV-TCNCIIDALCFK-KRIPEALEVLREMKN 355 (536)
Q Consensus 313 ~~~~~m~~~g~~p~~~-~~~~li~~~~~~-g~~~~A~~~~~~m~~ 355 (536)
+.++...+. .|+.. ....+-..+.+. +.+++|.++|..+.+
T Consensus 156 ~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 156 EECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp TTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 888776654 44433 333343344444 667889999987764
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.41 E-value=9.1e-07 Score=75.00 Aligned_cols=119 Identities=8% Similarity=0.137 Sum_probs=67.4
Q ss_pred ccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCH--HHH
Q 048749 168 RARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLW-LCRYKHV--EVA 242 (536)
Q Consensus 168 ~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~-~~~~~~~--~~a 242 (536)
..|++++|...|++.. .+.+...|..+...|...|++++|++.|++..+.. +.+...+..+..+ +...|++ ++|
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 3455555555555544 44455566666666666666666666666655543 3345555555555 5566665 666
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048749 243 ETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSK 287 (536)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 287 (536)
...++......+.+...+..+...|...|++++|...|++..+..
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 666666433334455666666666777777777777777666553
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.38 E-value=6.2e-07 Score=77.70 Aligned_cols=164 Identities=9% Similarity=-0.074 Sum_probs=73.2
Q ss_pred HHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 048749 163 LDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVE 240 (536)
Q Consensus 163 i~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 240 (536)
+......|+++++.+.++.-. .......+..+...+...|++++|++.|++..+..- .+. .+... ..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~-~~~~~--------~~~ 80 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFI-HTE-EWDDQ--------ILL 80 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT-TCT-TCCCH--------HHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh-ccc-ccchh--------hHH
Confidence 334444556666655555332 122344566777777788888888888887776431 111 00000 000
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 048749 241 VAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWE 320 (536)
Q Consensus 241 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 320 (536)
.-. . .....+|..+..+|.+.|++++|+..++...+.. +.+...+..+..+|...|++++|.+.|++..+
T Consensus 81 ~~~---~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 81 DKK---K------NIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp HHH---H------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHH---H------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 000 0 0012344445555555555555555555555443 23444555555555555555555555555554
Q ss_pred cCCCCCHhhHHHHHHHHHhcCChHHHH
Q 048749 321 KGRKPDVVTCNCIIDALCFKKRIPEAL 347 (536)
Q Consensus 321 ~g~~p~~~~~~~li~~~~~~g~~~~A~ 347 (536)
.. +.+...+..+..++...++.+++.
T Consensus 151 ~~-p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 151 LN-PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HS-TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 31 123444444555555544444444
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.37 E-value=9.3e-06 Score=76.72 Aligned_cols=141 Identities=8% Similarity=0.030 Sum_probs=69.7
Q ss_pred CCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHH
Q 048749 170 RRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDD--------------LSAFQNLLLWL 233 (536)
Q Consensus 170 g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--------------~~~~~~ll~~~ 233 (536)
+++++|...|+... .+.+...|..+...+.+.|++++|++.|++..+..-... ..+|..+..++
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 206 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 206 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555554433 223455777778888888888888888888776542111 23444444444
Q ss_pred HhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 048749 234 CRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTA 311 (536)
Q Consensus 234 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 311 (536)
.+.|++++|...+++.....+.+..+|..+..+|...|++++|...|++..+.. +-+...+..+..++.+.|+.+++
T Consensus 207 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 207 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444322223344444444444444444444444444444332 22333444444444444444443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.36 E-value=5e-06 Score=68.11 Aligned_cols=99 Identities=13% Similarity=0.053 Sum_probs=64.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 048749 256 DIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIID 335 (536)
Q Consensus 256 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 335 (536)
+...+..+...+.+.|++++|...|++..... +-+...|..+..+|...|++++|+..|++..+.. +.+...|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 44556666666667777777777777766654 3456666666677777777777777777766642 224556666666
Q ss_pred HHHhcCChHHHHHHHHHHHHC
Q 048749 336 ALCFKKRIPEALEVLREMKNR 356 (536)
Q Consensus 336 ~~~~~g~~~~A~~~~~~m~~~ 356 (536)
+|.+.|++++|...|++..+.
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 677777777777777766654
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=3.9e-06 Score=68.69 Aligned_cols=98 Identities=10% Similarity=-0.000 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 048749 256 DIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIID 335 (536)
Q Consensus 256 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 335 (536)
+...+..+...+.+.|++++|...|+...... +.+...|..+..+|...|++++|+..|++..... +.+...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 33444445555555555555555555554443 3344555555555555555555555555555432 113344444555
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 048749 336 ALCFKKRIPEALEVLREMKN 355 (536)
Q Consensus 336 ~~~~~g~~~~A~~~~~~m~~ 355 (536)
+|...|++++|...|+...+
T Consensus 98 ~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.33 E-value=8.1e-06 Score=77.15 Aligned_cols=129 Identities=8% Similarity=0.004 Sum_probs=110.8
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048749 155 GSNVFNAILDVLGRARRFVELIQVFDEMP--DLVN---------------EKTYGILLNRYAAAHMVEEAIGVFDRRKEF 217 (536)
Q Consensus 155 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 217 (536)
+...+..+...|.+.|++++|+..|++.. .+.+ ..+|..+..+|.+.|++++|++.|++.++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46678889999999999999999999877 4344 589999999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 048749 218 GELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEA-KRFWKDII 284 (536)
Q Consensus 218 g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~m~ 284 (536)
. +.+..++..+..++...|++++|...|++.....+.+..++..+...+.+.|+.++| ...|+.|.
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 567889999999999999999999999996544466888999999999999999988 44666664
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=1.9e-05 Score=61.05 Aligned_cols=97 Identities=11% Similarity=-0.032 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 048749 189 KTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWC 268 (536)
Q Consensus 189 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 268 (536)
..|..+...+...|++++|++.|++..+.. +.+...+..+...+...|++++|...+++.....+.+...+..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 344455555555555555555555555433 2344455555555555555555555555532222334555555566666
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 048749 269 VLGNVYEAKRFWKDIIKS 286 (536)
Q Consensus 269 ~~g~~~~A~~~~~~m~~~ 286 (536)
..|++++|...+++..+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 666666666666665544
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=1.9e-06 Score=70.64 Aligned_cols=62 Identities=10% Similarity=-0.124 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 048749 257 IKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMW 319 (536)
Q Consensus 257 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 319 (536)
...|..+..+|...|++++|...|++..... +.+...|..+..+|...|++++|.+.|+...
T Consensus 55 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 55 SRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLLQXGELAEAESGLFLAQ 116 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333333333333344444444443333322 1222333333334444444444444444333
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.32 E-value=2.3e-05 Score=60.63 Aligned_cols=94 Identities=10% Similarity=-0.054 Sum_probs=42.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048749 226 FQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKK 305 (536)
Q Consensus 226 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 305 (536)
+..+...+...|++++|...++......+.+...+..+...+...|++++|...+++..+.. +.+...+..+..++...
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHH
Confidence 33444444444555555554444322223344444444444444555555555554444432 22344444444444455
Q ss_pred CCHhHHHHHHHHHHH
Q 048749 306 GKLGTALRLFQAMWE 320 (536)
Q Consensus 306 g~~~~a~~~~~~m~~ 320 (536)
|++++|.+.++...+
T Consensus 86 ~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 86 NRFEEAKRTYEEGLK 100 (118)
T ss_dssp TCHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHH
Confidence 555555555544444
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.27 E-value=2.1e-06 Score=74.24 Aligned_cols=155 Identities=13% Similarity=0.007 Sum_probs=93.0
Q ss_pred HhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC--------------HHHHHHH
Q 048749 234 CRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCE-PD--------------SVTYATF 298 (536)
Q Consensus 234 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~--------------~~~~~~l 298 (536)
...|+++.+.+.++............+..+...+.+.|++++|...|++..+.... ++ ...|..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 94 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNL 94 (198)
T ss_dssp -------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Confidence 34445555544443311111123445666777777888888888888887764311 10 2677778
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048749 299 VNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRM 378 (536)
Q Consensus 299 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 378 (536)
..+|...|++++|+..++...+.. +.+...+..+..+|...|++++|...|++..+.... +...+..+..++...++.
T Consensus 95 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~ 172 (198)
T 2fbn_A 95 ATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEA 172 (198)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHH
Confidence 888888888888888888887752 335677777888888888888888888887765322 566677777777766666
Q ss_pred HHHH-HHHHHHHh
Q 048749 379 ETVY-EYLDEMEQ 390 (536)
Q Consensus 379 ~~A~-~~~~~m~~ 390 (536)
+++. ..+..|..
T Consensus 173 ~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 173 RKKDKLTFGGMFD 185 (198)
T ss_dssp HC-----------
T ss_pred HHHHHHHHHHHhc
Confidence 6655 44554443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.26 E-value=1.1e-05 Score=63.79 Aligned_cols=95 Identities=7% Similarity=-0.070 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 048749 190 TYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCV 269 (536)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 269 (536)
.|..+...+.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|...++......+.+...|..+..++..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 44445555555555555555555555443 33445555555555555555555555555322223445555555555556
Q ss_pred cCCHHHHHHHHHHHHH
Q 048749 270 LGNVYEAKRFWKDIIK 285 (536)
Q Consensus 270 ~g~~~~A~~~~~~m~~ 285 (536)
.|++++|...|++..+
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 6666666666555544
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.25 E-value=6.5e-06 Score=66.81 Aligned_cols=95 Identities=13% Similarity=-0.119 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 048749 190 TYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCV 269 (536)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 269 (536)
.+..+...+.+.|++++|+..|++..... +.+...|..+..++.+.|++++|...|+......+.+...+..+..+|..
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 34444445555555555555555554433 33444444555555555555555555554322223344445555555555
Q ss_pred cCCHHHHHHHHHHHHH
Q 048749 270 LGNVYEAKRFWKDIIK 285 (536)
Q Consensus 270 ~g~~~~A~~~~~~m~~ 285 (536)
.|++++|...|+...+
T Consensus 99 ~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 99 LGDLDGAESGFYSARA 114 (142)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=0.0012 Score=61.30 Aligned_cols=230 Identities=11% Similarity=0.041 Sum_probs=136.5
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--H
Q 048749 241 VAETFFESEKNEFGYDIKTMNIILNGWCVLGN----------VYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGK--L 308 (536)
Q Consensus 241 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--~ 308 (536)
+|..+++.+....+.+..+|+.--......+. +++++.+++.+.... +.+..+|+.-...+.+.++ +
T Consensus 48 eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~ 126 (331)
T 3dss_A 48 SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNW 126 (331)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCH
T ss_pred HHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccH
Confidence 45555555443334444455443333332222 567778888777665 5577777777767777773 7
Q ss_pred hHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc------------
Q 048749 309 GTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKR-IPEALEVLREMKNRGCLPNVTTYNSLIKHLCKI------------ 375 (536)
Q Consensus 309 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~------------ 375 (536)
++++.+++.+.+.... |...|+.-...+.+.|. ++++++.++.+.+..+. |...|+.....+.+.
T Consensus 127 ~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~ 204 (331)
T 3dss_A 127 ARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRL 204 (331)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CC
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhcccccccccc
Confidence 8888888888886433 66777776666777777 47888888888776544 777777766666554
Q ss_pred --CCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCChhHHHH
Q 048749 376 --KRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCK-MSTDTYNVILKLYVNWDCEDKVRH 452 (536)
Q Consensus 376 --~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~ 452 (536)
+.++++++.+.+.....+ -|...|+.+-..+.+. .|.. .+ -.+.+.++++++
T Consensus 205 ~~~~~~eEle~~~~ai~~~P---~d~SaW~Y~r~ll~~~------------~~~~~~~----------~~~~~~l~~el~ 259 (331)
T 3dss_A 205 PENVLLKELELVQNAFFTDP---NDQSAWFYHRWLLGAG------------SGRCELS----------VEKSTVLQSELE 259 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHST---TCHHHHHHHHHHHHSS------------SCGGGCC----------HHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHhc------------cCccccc----------hHHHHHHHHHHH
Confidence 346778888887777541 2333333221111111 0000 00 001244678888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHHCCCCCcHHH
Q 048749 453 TWEEMEKKGMGPDQRSYTVMIHG-----LYDKGRLEDALSYFHEMRLKGMVPEPRT 503 (536)
Q Consensus 453 ~~~~m~~~g~~p~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~~g~~p~~~t 503 (536)
.++++.+. .||. .|..+-.+ ....|..+++..++.++++ +.|...-
T Consensus 260 ~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~r~~ 310 (331)
T 3dss_A 260 SCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAA 310 (331)
T ss_dssp HHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH--HCGGGHH
T ss_pred HHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHH--hCcchhh
Confidence 88888876 4554 34432222 2245777888888888886 4555443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=0.00031 Score=65.17 Aligned_cols=165 Identities=7% Similarity=-0.069 Sum_probs=111.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCC----------HHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC
Q 048749 135 DWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARR----------FVELIQVFDEMP--DLVNEKTYGILLNRYAAAH 202 (536)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g 202 (536)
--+.|+++++.+...+ +-+..+|+.--.++...+. +++++.+++.+. .+.+..+|+.-...+...|
T Consensus 45 ~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~ 122 (331)
T 3dss_A 45 LDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP 122 (331)
T ss_dssp CSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccC
Confidence 3457899999998864 4567778877666655444 577888888777 7778888888777777777
Q ss_pred --CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc---------
Q 048749 203 --MVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKH-VEVAETFFESEKNEFGYDIKTMNIILNGWCVL--------- 270 (536)
Q Consensus 203 --~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~--------- 270 (536)
.+++++++++++.+.. +-|..+|+.-.-.+...|. .+++.+.++.+....+.|..+|+.....+.+.
T Consensus 123 ~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~ 201 (331)
T 3dss_A 123 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 201 (331)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC-----
T ss_pred cccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccc
Confidence 4788888888888766 5667777766666667776 47777777775444456777777666655544
Q ss_pred -----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048749 271 -----GNVYEAKRFWKDIIKSKCEPDSVTYATFVNALT 303 (536)
Q Consensus 271 -----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 303 (536)
+.++++++.++..+... +-|..+|+-+-..+.
T Consensus 202 ~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~ 238 (331)
T 3dss_A 202 GRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLG 238 (331)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 33566666666666544 345555554433333
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.23 E-value=2.8e-05 Score=61.39 Aligned_cols=95 Identities=12% Similarity=-0.089 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048749 225 AFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTK 304 (536)
Q Consensus 225 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 304 (536)
.+..+...+.+.|++++|...|++.....+.+...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..++..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 344444455555555555555555322223445555555555555555555555555555443 2334455555555555
Q ss_pred cCCHhHHHHHHHHHHH
Q 048749 305 KGKLGTALRLFQAMWE 320 (536)
Q Consensus 305 ~g~~~~a~~~~~~m~~ 320 (536)
.|++++|...|++..+
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 5555555555555544
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.21 E-value=1.2e-05 Score=61.56 Aligned_cols=93 Identities=13% Similarity=0.003 Sum_probs=37.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCC--CHHHHHHHHHHHH
Q 048749 191 YGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGY--DIKTMNIILNGWC 268 (536)
Q Consensus 191 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~li~~~~ 268 (536)
|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...+++.....+. +...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~ 87 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALR 87 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHH
Confidence 3334444444444444444444444332 223333333344444444444444444432221122 3334444444444
Q ss_pred hc-CCHHHHHHHHHHHH
Q 048749 269 VL-GNVYEAKRFWKDII 284 (536)
Q Consensus 269 ~~-g~~~~A~~~~~~m~ 284 (536)
+. |++++|.+.++...
T Consensus 88 ~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 88 YIEGKEVEAEIAEARAK 104 (112)
T ss_dssp TCSSCSHHHHHHHHHHG
T ss_pred HHhCCHHHHHHHHHHHh
Confidence 44 44444444444443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.20 E-value=2e-05 Score=63.84 Aligned_cols=97 Identities=7% Similarity=-0.044 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 048749 257 IKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDA 336 (536)
Q Consensus 257 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 336 (536)
...+..+...+.+.|++++|...|+...... +.+...|..+..++...|++++|+..|+...... +.+...+..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence 3344445555555666666666666555543 3345555555555666666666666666655542 2234445555555
Q ss_pred HHhcCChHHHHHHHHHHHH
Q 048749 337 LCFKKRIPEALEVLREMKN 355 (536)
Q Consensus 337 ~~~~g~~~~A~~~~~~m~~ 355 (536)
|...|++++|...|+...+
T Consensus 96 ~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5666666666666655543
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.19 E-value=1.9e-05 Score=62.44 Aligned_cols=97 Identities=14% Similarity=0.079 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCC---CC----HHHHH
Q 048749 189 KTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFG---YD----IKTMN 261 (536)
Q Consensus 189 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~----~~~~~ 261 (536)
..|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++......+ ++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345555556666666666666666655543 33445555555555555555555555555321111 11 44555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 048749 262 IILNGWCVLGNVYEAKRFWKDIIKS 286 (536)
Q Consensus 262 ~li~~~~~~g~~~~A~~~~~~m~~~ 286 (536)
.+...|...|++++|.+.|+...+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 5555555666666666666555543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.18 E-value=2.4e-05 Score=59.84 Aligned_cols=93 Identities=15% Similarity=0.021 Sum_probs=39.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC--CHhhHHHHHHHH
Q 048749 260 MNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKP--DVVTCNCIIDAL 337 (536)
Q Consensus 260 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~ 337 (536)
+..+...+...|++++|...|++..+.. +.+...|..+...+...|++++|.+.+++..+.. +. +...+..+..++
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHH
Confidence 3344444444444444444444444332 2233344444444444444444444444444421 11 233344444444
Q ss_pred Hhc-CChHHHHHHHHHHH
Q 048749 338 CFK-KRIPEALEVLREMK 354 (536)
Q Consensus 338 ~~~-g~~~~A~~~~~~m~ 354 (536)
.+. |++++|.+.++...
T Consensus 87 ~~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAK 104 (112)
T ss_dssp TTCSSCSHHHHHHHHHHG
T ss_pred HHHhCCHHHHHHHHHHHh
Confidence 444 44444444444443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.16 E-value=4.5e-05 Score=61.01 Aligned_cols=97 Identities=13% Similarity=-0.030 Sum_probs=41.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 048749 187 NEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNG 266 (536)
Q Consensus 187 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 266 (536)
+...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|+++.|...++......+.+...+..+..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 33444444444444444444444444444432 22333444444444444444444444444222222234444444444
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 048749 267 WCVLGNVYEAKRFWKDII 284 (536)
Q Consensus 267 ~~~~g~~~~A~~~~~~m~ 284 (536)
|...|++++|...|++..
T Consensus 87 ~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 444444444444444443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.15 E-value=7.6e-05 Score=60.45 Aligned_cols=98 Identities=12% Similarity=0.007 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHH
Q 048749 187 NEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDD----LSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNI 262 (536)
Q Consensus 187 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 262 (536)
+...+..+...+...|++++|++.|++..+.. |+ ...+..+...+...|++++|...++......+.+...+..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 44445555555555555555555555554432 33 3344444444455555555555554432222334444555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 048749 263 ILNGWCVLGNVYEAKRFWKDIIKS 286 (536)
Q Consensus 263 li~~~~~~g~~~~A~~~~~~m~~~ 286 (536)
+..+|...|++++|...|++..+.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Confidence 555555555555555555555443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.15 E-value=3.6e-05 Score=64.08 Aligned_cols=97 Identities=12% Similarity=-0.069 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 048749 189 KTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWC 268 (536)
Q Consensus 189 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 268 (536)
..|..+...+.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|...|++.....+.+...|..+..+|.
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 345555555555555555555555555543 3345555555555555555555555555532222344555556666666
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 048749 269 VLGNVYEAKRFWKDIIKS 286 (536)
Q Consensus 269 ~~g~~~~A~~~~~~m~~~ 286 (536)
..|++++|...|++..+.
T Consensus 91 ~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHh
Confidence 666666666666655543
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.14 E-value=5.8e-05 Score=59.73 Aligned_cols=96 Identities=10% Similarity=0.087 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC--CCCC----HhhHHH
Q 048749 259 TMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKG--RKPD----VVTCNC 332 (536)
Q Consensus 259 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~----~~~~~~ 332 (536)
++..+...+.+.|++++|+..|++.++.. +-+...|..+..+|.+.|++++|++.+++.++.. ..++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34445555555555555555555555443 2344555555555555555555555555554421 0111 123444
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH
Q 048749 333 IIDALCFKKRIPEALEVLREMKN 355 (536)
Q Consensus 333 li~~~~~~g~~~~A~~~~~~m~~ 355 (536)
+..++...|++++|++.|++...
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 44455555555555555555443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.13 E-value=4.2e-05 Score=63.67 Aligned_cols=97 Identities=8% Similarity=-0.111 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048749 223 LSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNAL 302 (536)
Q Consensus 223 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 302 (536)
...+..+...+.+.|++++|...|++.....+.+...|..+..+|.+.|++++|+..|++.++.. +-+...|..+..+|
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 33444555555556666666665555332223455555555555555666666666555555543 23445555555555
Q ss_pred HhcCCHhHHHHHHHHHHH
Q 048749 303 TKKGKLGTALRLFQAMWE 320 (536)
Q Consensus 303 ~~~g~~~~a~~~~~~m~~ 320 (536)
...|++++|.+.|++..+
T Consensus 90 ~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHH
Confidence 555555555555555554
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.13 E-value=2.3e-05 Score=61.92 Aligned_cols=109 Identities=10% Similarity=0.066 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC--CCC----HhhHHH
Q 048749 259 TMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGR--KPD----VVTCNC 332 (536)
Q Consensus 259 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~----~~~~~~ 332 (536)
.+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++...+... .++ ..++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 44455555555666666666665555443 33445555555556666666666666655554311 111 445555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048749 333 IIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIK 370 (536)
Q Consensus 333 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 370 (536)
+..++.+.|++++|.+.|+...+.. |+...+..+..
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~ 120 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHH
Confidence 5666666666666666666665532 34444443333
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.11 E-value=6e-05 Score=59.62 Aligned_cols=100 Identities=10% Similarity=0.084 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCC----HHHH
Q 048749 292 SVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGC--LPN----VTTY 365 (536)
Q Consensus 292 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~~~ 365 (536)
..++..+...+.+.|++++|++.|++.++.. +.+...|..+..+|.+.|++++|++.+++..+... .++ ..+|
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 3467788899999999999999999999863 33677899999999999999999999998875421 111 3467
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048749 366 NSLIKHLCKIKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 366 ~~li~~~~~~~~~~~A~~~~~~m~~~~ 392 (536)
..+..++...|++++|++.|++.....
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 778888999999999999999988754
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.11 E-value=6.8e-05 Score=60.75 Aligned_cols=109 Identities=6% Similarity=-0.139 Sum_probs=68.3
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 048749 154 PGSNVFNAILDVLGRARRFVELIQVFDEMP-DLVN----EKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQN 228 (536)
Q Consensus 154 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 228 (536)
.+...+..+...+.+.|++++|...|++.. ..++ ...|..+...|...|++++|++.+++..+.. +.+...+..
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 104 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYR 104 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHH
Confidence 355666666777777777777777777655 2233 4566666777777777777777777766653 335666666
Q ss_pred HHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHH
Q 048749 229 LLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNII 263 (536)
Q Consensus 229 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 263 (536)
+..++...|++++|...|++.....+.+...+..+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 139 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEAL 139 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 67777777777777777776433223344444333
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.10 E-value=5.9e-05 Score=60.31 Aligned_cols=98 Identities=15% Similarity=0.004 Sum_probs=58.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 048749 256 DIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIID 335 (536)
Q Consensus 256 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 335 (536)
+...+..+...+...|++++|...|+...+.. +.+...|..+..++...|++++|...++...+.. +.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 45555566666666666666666666655543 3345556666666666666666666666665542 224555666666
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 048749 336 ALCFKKRIPEALEVLREMKN 355 (536)
Q Consensus 336 ~~~~~g~~~~A~~~~~~m~~ 355 (536)
+|...|++++|...|++..+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 66666666666666666543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00017 Score=70.60 Aligned_cols=195 Identities=12% Similarity=0.019 Sum_probs=118.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHhc---CCCCCC
Q 048749 196 NRYAAAHMVEEAIGVFDRRKEFGELDD----------------LSAFQNLLLWLCRYKHVEVAETFFESEK---NEFGYD 256 (536)
Q Consensus 196 ~~~~~~g~~~~A~~~~~~m~~~g~~~~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~ 256 (536)
+.+.+.|++++|++.|..+.+..-... ...+..+...|.+.|++++|.+.+.... ..+...
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 344556666666666666654321110 1235566677777777777777766632 111111
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHc--CCC--
Q 048749 257 ---IKTMNIILNGWCVLGNVYEAKRFWKDIIK----SKCEPD-SVTYATFVNALTKKGKLGTALRLFQAMWEK--GRK-- 324 (536)
Q Consensus 257 ---~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~-- 324 (536)
..+.+.+-..+...|+.+.|..+++.... .+..+. ..++..+...|...|++++|..+++++... +..
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 11233333344456788888888777653 222222 356677888888888888888888877653 111
Q ss_pred C-CHhhHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048749 325 P-DVVTCNCIIDALCFKKRIPEALEVLREMKNR----GCLPN--VTTYNSLIKHLCKIKRMETVYEYLDEMEQ 390 (536)
Q Consensus 325 p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 390 (536)
+ ...++..++..|...|++++|..++++.... +..+. ...+..+...+...+++++|...|.+..+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1 2346777888888889999998888876432 11111 34556666677778888888888777654
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.00 E-value=5.2e-05 Score=62.38 Aligned_cols=133 Identities=14% Similarity=0.103 Sum_probs=84.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-CCC----Hh
Q 048749 259 TMNIILNGWCVLGNVYEAKRFWKDIIKSKC-EPD----SVTYATFVNALTKKGKLGTALRLFQAMWEKGR-KPD----VV 328 (536)
Q Consensus 259 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~ 328 (536)
++..+...|...|++++|...+++..+... .++ ..++..+...+...|++++|.+.+++..+... ..+ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 455566666667777777776666554210 011 13566667777777777777777777655310 011 34
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 048749 329 TCNCIIDALCFKKRIPEALEVLREMKNR----GCLP-NVTTYNSLIKHLCKIKRMETVYEYLDEMEQK 391 (536)
Q Consensus 329 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 391 (536)
++..+...+...|++++|.+.+++..+. +..+ ....+..+...|...|++++|.+.+++..+.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5666777778888888888888776532 1111 1345677777888889999998888877653
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.99 E-value=5.5e-05 Score=59.25 Aligned_cols=51 Identities=14% Similarity=0.085 Sum_probs=19.7
Q ss_pred HHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048749 165 VLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRK 215 (536)
Q Consensus 165 ~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 215 (536)
.+.+.|++++|+..|++.. .+.+...|..+..++...|++++|+..|++..
T Consensus 26 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 78 (121)
T 1hxi_A 26 SMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHAR 78 (121)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333344444444443333 23333333333333333344444443333333
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.98 E-value=5.5e-05 Score=59.28 Aligned_cols=90 Identities=12% Similarity=-0.067 Sum_probs=43.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH
Q 048749 194 LLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNV 273 (536)
Q Consensus 194 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 273 (536)
+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...|++....-+.+...+..+..+|...|++
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~ 101 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 101 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 3344445555555555555554433 234444444555555555555555555543222233444455555555555555
Q ss_pred HHHHHHHHHHH
Q 048749 274 YEAKRFWKDII 284 (536)
Q Consensus 274 ~~A~~~~~~m~ 284 (536)
++|...|++..
T Consensus 102 ~~A~~~~~~al 112 (121)
T 1hxi_A 102 NAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555444
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.97 E-value=4.7e-05 Score=62.62 Aligned_cols=26 Identities=19% Similarity=0.172 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048749 190 TYGILLNRYAAAHMVEEAIGVFDRRK 215 (536)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~ 215 (536)
++..+...+...|++++|++.+++..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al 36 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRL 36 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34445555555555555555555544
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00022 Score=69.77 Aligned_cols=187 Identities=9% Similarity=-0.023 Sum_probs=125.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCH---------------HHHHHHHHHHHccCCHHHHHHHHHhCC----CCCCH----HH
Q 048749 134 FDWEAAYTFFKWVSREGDYSPGS---------------NVFNAILDVLGRARRFVELIQVFDEMP----DLVNE----KT 190 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~---------------~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~----~~ 190 (536)
|++++|++.|..+.+...-..+. .++..+...|.+.|++++|.+.+..+. ...+. .+
T Consensus 18 ~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 97 (434)
T 4b4t_Q 18 KQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVL 97 (434)
T ss_dssp TCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence 69999999999998764222221 247788899999999999999998876 22222 12
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhc---CC---CCCCHHH
Q 048749 191 YGILLNRYAAAHMVEEAIGVFDRRKE----FGELDD-LSAFQNLLLWLCRYKHVEVAETFFESEK---NE---FGYDIKT 259 (536)
Q Consensus 191 ~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~---~~~~~~~ 259 (536)
.+.+-..+...|+.++|.+++..... .+..+. ..++..+...+...|++++|..+++... .+ -+....+
T Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~ 177 (434)
T 4b4t_Q 98 KTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDV 177 (434)
T ss_dssp HHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHH
Confidence 33333444456888999888877653 232333 4567778888888888888888887741 11 1223456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 048749 260 MNIILNGWCVLGNVYEAKRFWKDIIKS----KCEPD--SVTYATFVNALTKKGKLGTALRLFQAMWE 320 (536)
Q Consensus 260 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 320 (536)
+..++..|...|++++|..++++.... +.++. ...+..+...+...|++++|...|.+..+
T Consensus 178 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 178 HLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 788888888888888888888776542 11111 23455556666777888888877776654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00032 Score=55.22 Aligned_cols=92 Identities=12% Similarity=0.007 Sum_probs=43.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCC---HHHHHHHHHHH
Q 048749 194 LLNRYAAAHMVEEAIGVFDRRKEFGELDDL---SAFQNLLLWLCRYKHVEVAETFFESEKNEFGYD---IKTMNIILNGW 267 (536)
Q Consensus 194 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~li~~~ 267 (536)
+...+...|++++|++.|++..+.. +.+. ..+..+..++.+.|++++|...|+......+.+ ..++..+..++
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3444555555555555555555432 1111 244444445555555555555555432222222 34444455555
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 048749 268 CVLGNVYEAKRFWKDIIKS 286 (536)
Q Consensus 268 ~~~g~~~~A~~~~~~m~~~ 286 (536)
...|++++|...|+.+.+.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 5555555555555555443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00015 Score=57.18 Aligned_cols=87 Identities=11% Similarity=-0.067 Sum_probs=42.5
Q ss_pred HHHHHHccCCHHHHHHHHHhCC--CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHH
Q 048749 162 ILDVLGRARRFVELIQVFDEMP--DLVNE---KTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDD---LSAFQNLLLWL 233 (536)
Q Consensus 162 li~~~~~~g~~~~A~~~~~~~~--~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~ll~~~ 233 (536)
+...+.+.|++++|...|+.+. .+.+. ..+..+..++...|++++|+..|++..+.. +.+ ..++..+..++
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHH
Confidence 3444445555555555555443 22222 344445555555555555555555555433 112 34444455555
Q ss_pred HhcCCHHHHHHHHHHh
Q 048749 234 CRYKHVEVAETFFESE 249 (536)
Q Consensus 234 ~~~~~~~~a~~~~~~~ 249 (536)
.+.|++++|...|+.+
T Consensus 87 ~~~g~~~~A~~~~~~~ 102 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQV 102 (129)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHH
Confidence 5555555555555553
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00012 Score=72.34 Aligned_cols=155 Identities=10% Similarity=-0.026 Sum_probs=78.0
Q ss_pred CHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048749 171 RFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFES 248 (536)
Q Consensus 171 ~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 248 (536)
++++|.+.|+... .+.....|..+...+.+.|++++|+..|++.++..-.... + ..+...+. .
T Consensus 249 ~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~--~-----------~~~~~~~~-~- 313 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYG--L-----------SEKESKAS-E- 313 (457)
T ss_dssp EEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS--C-----------CHHHHHHH-H-
T ss_pred hcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc--C-----------ChHHHHHH-H-
Confidence 4445555454333 2234456777888888888888888888887764311110 0 00000000 0
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHh
Q 048749 249 EKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVV 328 (536)
Q Consensus 249 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 328 (536)
+....+|..+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|+..|++..+.. +.+..
T Consensus 314 -----~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~ 386 (457)
T 1kt0_A 314 -----SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKA 386 (457)
T ss_dssp -----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----C
T ss_pred -----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHH
Confidence 0012344555555555555555555555555443 2345555555555555555555555555555531 11334
Q ss_pred hHHHHHHHHHhcCChHHHH
Q 048749 329 TCNCIIDALCFKKRIPEAL 347 (536)
Q Consensus 329 ~~~~li~~~~~~g~~~~A~ 347 (536)
.+..+..++.+.++.+++.
T Consensus 387 a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 387 ARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00017 Score=68.97 Aligned_cols=137 Identities=8% Similarity=-0.077 Sum_probs=74.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 048749 190 TYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCV 269 (536)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 269 (536)
.|..+...+.+.|++++|++.|++.++.- + ........+ ......+.+..+|..+..+|.+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~----------~~~~~~~~~-------~~~~~~~~~~~~~~nla~~~~~ 285 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV--E----------GSRAAAEDA-------DGAKLQPVALSCVLNIGACKLK 285 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--H----------HHHHHSCHH-------HHGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHh--h----------cCccccChH-------HHHHHHHHHHHHHHHHHHHHHh
Confidence 46667777778888888888887766520 0 000000000 0000112234556666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHH
Q 048749 270 LGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEAL 347 (536)
Q Consensus 270 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 347 (536)
.|++++|+..+++..+.. +.+...|..+..+|...|++++|++.|++..+.. +.+...+..+...+.+.++.+++.
T Consensus 286 ~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 286 MSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp TTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666543 2345566666666666666666666666666542 124445555555555555555544
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.88 E-value=2.9e-05 Score=60.43 Aligned_cols=85 Identities=14% Similarity=-0.013 Sum_probs=40.9
Q ss_pred CCHhHHHHHHHHHHHcC--CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048749 306 GKLGTALRLFQAMWEKG--RKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYE 383 (536)
Q Consensus 306 g~~~~a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~ 383 (536)
|++++|+..|++..+.+ -+.+...+..+..+|.+.|++++|+..|++..+.... +...+..+..++.+.|++++|..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHHH
Confidence 44555555555554432 1112334445555555555555555555555544322 34455555555555555555555
Q ss_pred HHHHHHhc
Q 048749 384 YLDEMEQK 391 (536)
Q Consensus 384 ~~~~m~~~ 391 (536)
.|.+....
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.88 E-value=3.6e-05 Score=76.39 Aligned_cols=119 Identities=18% Similarity=0.089 Sum_probs=80.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048749 196 NRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYE 275 (536)
Q Consensus 196 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 275 (536)
..+.+.|++++|++.|++..+.. +.+..++..+..++.+.|++++|...+++.....+.+..+|..+..+|...|++++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 34556677888888887777654 44567777777777888888888887777544445567778888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHhHHHHHHH
Q 048749 276 AKRFWKDIIKSKCEPDSVTYATFVNA--LTKKGKLGTALRLFQ 316 (536)
Q Consensus 276 A~~~~~~m~~~g~~~~~~~~~~li~~--~~~~g~~~~a~~~~~ 316 (536)
|.+.|++..+.. +-+...+..+..+ +.+.|++++|++.++
T Consensus 93 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 888888877654 2233344444444 777788888888877
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00015 Score=71.60 Aligned_cols=122 Identities=9% Similarity=-0.049 Sum_probs=81.5
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048749 155 GSNVFNAILDVLGRARRFVELIQVFDEMP--DLVN---------------EKTYGILLNRYAAAHMVEEAIGVFDRRKEF 217 (536)
Q Consensus 155 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 217 (536)
....|..+...|.+.|++++|...|++.. .+.+ ...|..+..+|.+.|++++|+..|++.++.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 35678888999999999999999999876 3233 466777777777777777777777777665
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048749 218 GELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAK 277 (536)
Q Consensus 218 g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 277 (536)
. +.+...|..+..+|...|++++|...|++.....+.+..++..+..++.+.++.++|.
T Consensus 347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4 3456666666666666666666666666654433445555666666666666655554
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.80 E-value=3.2e-05 Score=76.81 Aligned_cols=116 Identities=12% Similarity=-0.026 Sum_probs=56.6
Q ss_pred HHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048749 165 VLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVA 242 (536)
Q Consensus 165 ~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a 242 (536)
.+.+.|++++|.+.|++.. .+.+..+|..+..+|.+.|++++|++.+++..+.. +.+..++..+..++.+.|++++|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 3344555555555555544 34445555555555555555555555555555543 33445555555555555555555
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 048749 243 ETFFESEKNEFGYDIKTMNIILNG--WCVLGNVYEAKRFWK 281 (536)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~ 281 (536)
...|++.....+.+...+..+..+ +.+.|++++|++.++
T Consensus 94 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 555555322112233333333333 555566666666655
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.76 E-value=2.7e-05 Score=60.61 Aligned_cols=85 Identities=13% Similarity=0.073 Sum_probs=40.9
Q ss_pred cCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048749 201 AHMVEEAIGVFDRRKEFG--ELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKR 278 (536)
Q Consensus 201 ~g~~~~A~~~~~~m~~~g--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 278 (536)
.|++++|+..|++..+.+ -+.+..++..+..++...|++++|...|++.....+.+..++..+..++.+.|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 355555555555555532 122233444555555555555555555555332233345555555555555555555555
Q ss_pred HHHHHHH
Q 048749 279 FWKDIIK 285 (536)
Q Consensus 279 ~~~~m~~ 285 (536)
.|++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0011 Score=67.01 Aligned_cols=171 Identities=7% Similarity=-0.073 Sum_probs=135.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCC----------HHHHHHHHHhCC--CCCCHHHHHHHHHHHHhc
Q 048749 134 FDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARR----------FVELIQVFDEMP--DLVNEKTYGILLNRYAAA 201 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~ 201 (536)
..-++|++.++.+.... +-+..+|+.--.++.+.|+ ++++++.++.+. .+.+..+|+.-...+.+.
T Consensus 43 ~~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 35578899999998864 5567889988888888777 899999999988 788999999998888899
Q ss_pred C--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc--------
Q 048749 202 H--MVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYK-HVEVAETFFESEKNEFGYDIKTMNIILNGWCVL-------- 270 (536)
Q Consensus 202 g--~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~-------- 270 (536)
| +++++++.++++.+.. +-|..+|+.-...+.+.| ..+++.+.++++-...+.|..+|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred ccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 9 7799999999999977 667888888888888888 888899988886655677888888877776653
Q ss_pred ------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048749 271 ------GNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKL 308 (536)
Q Consensus 271 ------g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 308 (536)
+.++++++.+++.+... +-|...|...-..+.+.++.
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCC
T ss_pred cccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCc
Confidence 45677777777777654 44566777666666665553
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00039 Score=57.46 Aligned_cols=115 Identities=14% Similarity=0.034 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 048749 189 KTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWC 268 (536)
Q Consensus 189 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 268 (536)
..+......+.+.|++++|++.|.+.++.- ............. ...+ .+.+..+|..+..+|.
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~------------~~~~~~~~~~~~~--~~~~---~~~~~~~~~nla~~~~ 74 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRL------------DTLILREKPGEPE--WVEL---DRKNIPLYANMSQCYL 74 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------------HHHHHTSCTTSHH--HHHH---HHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH------------HHhcccCCCCHHH--HHHH---HHHHHHHHHHHHHHHH
Confidence 356666667777777777777777665430 0000000000000 0000 0123345555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 048749 269 VLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEK 321 (536)
Q Consensus 269 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 321 (536)
+.|++++|+..++..++.. +.+...|..+..+|...|++++|...|+...+.
T Consensus 75 ~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 75 NIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 6666666666666555543 334555555566666666666666666655553
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00042 Score=57.29 Aligned_cols=66 Identities=15% Similarity=0.070 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048749 291 DSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRG 357 (536)
Q Consensus 291 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 357 (536)
+...|..+..+|.+.|++++|+..++...+.. +.+...|..+..+|...|++++|...|++..+..
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 45788899999999999999999999999863 3467889999999999999999999999998763
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00034 Score=66.76 Aligned_cols=138 Identities=11% Similarity=-0.039 Sum_probs=96.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048749 226 FQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKK 305 (536)
Q Consensus 226 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 305 (536)
+..+...+.+.|++++|...|++.....+ .. ......+++.. .. +.+..+|..+..+|.+.
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~-~~----------~~~~~~~~~~~-------~~-~~~~~~~~nla~~~~~~ 286 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVE-GS----------RAAAEDADGAK-------LQ-PVALSCVLNIGACKLKM 286 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HH----------HHHSCHHHHGG-------GH-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhh-cC----------ccccChHHHHH-------HH-HHHHHHHHHHHHHHHhc
Confidence 44566677777888888777766321100 00 00011111111 11 23457888999999999
Q ss_pred CCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048749 306 GKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEY 384 (536)
Q Consensus 306 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~ 384 (536)
|++++|++.+++..+.. +.+...+..+..+|...|++++|++.|++..+.... +...+..+...+...++.+++.+.
T Consensus 287 g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 287 SDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999863 336778889999999999999999999999876432 677788888888888888877653
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0012 Score=66.69 Aligned_cols=173 Identities=9% Similarity=-0.056 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC--
Q 048749 204 VEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKH----------VEVAETFFESEKNEFGYDIKTMNIILNGWCVLG-- 271 (536)
Q Consensus 204 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g-- 271 (536)
.++|++.++++.+.. +-+..+|+.--.++...|+ ++++...++.+....+-+..+|+.-.-.+.+.|
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccc
Confidence 455666666666544 3334445444444444444 566666666644344556666666666666666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc----------
Q 048749 272 NVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKG-KLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFK---------- 340 (536)
Q Consensus 272 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~---------- 340 (536)
+++++++.++++.+.. +.+..+|+.-...+.+.| .++++++.++++.+.... |...|+.....+.+.
T Consensus 124 ~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccccc
Confidence 5577777777777665 446667766666666666 677777777777665332 555666555555542
Q ss_pred ----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048749 341 ----KRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMET 380 (536)
Q Consensus 341 ----g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 380 (536)
+.++++++.+++....... |...|+-.-..+.+.++.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 4467777787777665332 56777776666666665333
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00074 Score=54.11 Aligned_cols=112 Identities=9% Similarity=0.011 Sum_probs=83.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCChHH
Q 048749 270 LGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCF----KKRIPE 345 (536)
Q Consensus 270 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~ 345 (536)
.+++++|.++|++..+.| .++.. |...|...+.+++|.++|++..+.| +...+..|-..|.. .+++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 356778888888888777 34433 5566666677778888888887764 56667777777777 778888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcC
Q 048749 346 ALEVLREMKNRGCLPNVTTYNSLIKHLCK----IKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 346 A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~ 392 (536)
|++.|++..+.| +...+..|-..|.. .++.++|.++|++..+.+
T Consensus 80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 888888887764 56777777777777 788888888888887776
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00015 Score=68.48 Aligned_cols=146 Identities=10% Similarity=0.039 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 048749 157 NVFNAILDVLGRARRFVELIQVFDEMP-DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCR 235 (536)
Q Consensus 157 ~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 235 (536)
..+..+...+.+.|++++|...|++.. ..++... +...|+.+++...+. ...|..+..++.+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~~ 242 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLIK 242 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHHH
Confidence 345566667777777777777777654 2222210 111122222221110 0244555555566
Q ss_pred cCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHhHHHHH
Q 048749 236 YKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNA-LTKKGKLGTALRL 314 (536)
Q Consensus 236 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~~~~a~~~ 314 (536)
.|++++|...++......+.+..+|..+..+|...|++++|...|++..+.. +-+...+..+... ....+..+.+.++
T Consensus 243 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 243 LKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666655332223455566666666666666666666666554432 1122333333333 2233445555556
Q ss_pred HHHHHH
Q 048749 315 FQAMWE 320 (536)
Q Consensus 315 ~~~m~~ 320 (536)
|..|..
T Consensus 322 ~~~~l~ 327 (338)
T 2if4_A 322 YKGIFK 327 (338)
T ss_dssp ------
T ss_pred HHHhhC
Confidence 655544
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.62 E-value=6.3e-05 Score=57.53 Aligned_cols=62 Identities=11% Similarity=0.065 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048749 156 SNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEF 217 (536)
Q Consensus 156 ~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 217 (536)
...+..+...+.+.|++++|+..|++.. .+.+...|..+..++...|++++|++.|++..+.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 4455555566666666666666666554 4445555666666666666666666666665543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00027 Score=66.68 Aligned_cols=96 Identities=8% Similarity=-0.061 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H
Q 048749 294 TYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKH-L 372 (536)
Q Consensus 294 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~ 372 (536)
.|..+..+|.+.|++++|+..++...+.. +.+...|..+..+|...|++++|+..|++..+.... +...+..+... .
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~ 309 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAE 309 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 56666666777777777777777766642 224566666677777777777777777766543211 23333333333 2
Q ss_pred HhcCCHHHHHHHHHHHHhc
Q 048749 373 CKIKRMETVYEYLDEMEQK 391 (536)
Q Consensus 373 ~~~~~~~~A~~~~~~m~~~ 391 (536)
...+..+++..+|..|...
T Consensus 310 ~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 310 QEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHhhCC
Confidence 2334555566666666543
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0025 Score=50.91 Aligned_cols=64 Identities=16% Similarity=0.113 Sum_probs=39.6
Q ss_pred CHHHHHHHHHHHHc----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 048749 430 STDTYNVILKLYVN----WDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYD----KGRLEDALSYFHEMRLKG 496 (536)
Q Consensus 430 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 496 (536)
+...+..|...|.. .+++++|.+.|++..+.| +...+..|-..|.. .++.++|.++|++..+.|
T Consensus 56 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 56 SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 34455555555555 566666666666666654 45556666666666 667777777777766655
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0012 Score=53.51 Aligned_cols=28 Identities=21% Similarity=-0.021 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048749 190 TYGILLNRYAAAHMVEEAIGVFDRRKEF 217 (536)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 217 (536)
.+......+...|++++|++.|++.++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l 40 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI 40 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 3444555666667777777777766654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00044 Score=52.61 Aligned_cols=95 Identities=7% Similarity=-0.019 Sum_probs=76.8
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc-------HH
Q 048749 430 STDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPE-------PR 502 (536)
Q Consensus 430 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~~ 502 (536)
+...+..+...+...|++++|.+.|++..+.. +.+...|..+..++...|++++|++.+++.++. .|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence 45678888999999999999999999998763 336788999999999999999999999999874 455 44
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHh
Q 048749 503 TGILVNDMNIKLKERGEQGKKVIKL 527 (536)
Q Consensus 503 t~~~l~~~~~~~~~~~~a~~~~~~~ 527 (536)
.+..+..++...|..+++.+.+.++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 5667777777777777776665554
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00052 Score=67.74 Aligned_cols=125 Identities=7% Similarity=-0.054 Sum_probs=90.3
Q ss_pred HHhcCCHHHHHHHHHHHHHC-----C-CCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHc-----CC-CCC-HhhHHH
Q 048749 267 WCVLGNVYEAKRFWKDIIKS-----K-CEPD-SVTYATFVNALTKKGKLGTALRLFQAMWEK-----GR-KPD-VVTCNC 332 (536)
Q Consensus 267 ~~~~g~~~~A~~~~~~m~~~-----g-~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~-~p~-~~~~~~ 332 (536)
+...|++++|+.++++..+. | -.|+ ..+++.|..+|...|++++|+.++++..+. |- .|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 45688899998888877652 2 1222 357888888999999999999988887653 21 222 456888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH-----CCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 048749 333 IIDALCFKKRIPEALEVLREMKN-----RGCL-PN-VTTYNSLIKHLCKIKRMETVYEYLDEMEQK 391 (536)
Q Consensus 333 li~~~~~~g~~~~A~~~~~~m~~-----~g~~-p~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 391 (536)
|...|...|++++|+.++++..+ .|.. |+ ..+.+.+-.++...+.+++|..+|..+.+.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999998887753 2322 22 344566667788888899999999888764
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00038 Score=68.73 Aligned_cols=50 Identities=14% Similarity=0.007 Sum_probs=26.7
Q ss_pred HHccCCHHHHHHHHHhCC-------CC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048749 166 LGRARRFVELIQVFDEMP-------DL---VNEKTYGILLNRYAAAHMVEEAIGVFDRRK 215 (536)
Q Consensus 166 ~~~~g~~~~A~~~~~~~~-------~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 215 (536)
+...|++++|+.++++.. .+ ....+++.|...|...|++++|+.++++.+
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL 378 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMV 378 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 345566666666555443 11 122345666666666666666666655543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0016 Score=52.90 Aligned_cols=61 Identities=18% Similarity=0.005 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHc-----CCCCC-HhhH----HHHHHHHHhcCChHHHHHHHHHHH
Q 048749 294 TYATFVNALTKKGKLGTALRLFQAMWEK-----GRKPD-VVTC----NCIIDALCFKKRIPEALEVLREMK 354 (536)
Q Consensus 294 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~p~-~~~~----~~li~~~~~~g~~~~A~~~~~~m~ 354 (536)
.|..+..++.+.|++++|+..+++.++. .+.|+ ...| .....++...|++++|+..|++..
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 4444444455555555555544444442 11232 2334 455555555555555555555553
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0016 Score=47.20 Aligned_cols=61 Identities=18% Similarity=0.231 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048749 157 NVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEF 217 (536)
Q Consensus 157 ~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 217 (536)
..+..+...+.+.|++++|...|++.. .+.+...|..+...+...|++++|++.|++..+.
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 445555555555555555555555544 3344555555555555555555555555555543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0018 Score=49.75 Aligned_cols=77 Identities=8% Similarity=-0.016 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048749 138 AAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRK 215 (536)
Q Consensus 138 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 215 (536)
.|+..|+.+.+.. +.+...+..+..+|.+.|++++|+..|++.. .+.+...|..+..+|...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3566666666653 4567777777777778888888887777766 55666777777777777777777777777766
Q ss_pred H
Q 048749 216 E 216 (536)
Q Consensus 216 ~ 216 (536)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0022 Score=46.52 Aligned_cols=58 Identities=19% Similarity=0.209 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048749 190 TYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFES 248 (536)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 248 (536)
.|..+...+...|++++|++.|++..+.. +.+...+..+...+.+.|++++|...+++
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 68 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 44444555555555555555555554432 22333444444444444444444444444
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.003 Score=48.44 Aligned_cols=60 Identities=10% Similarity=0.057 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 048749 257 IKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQA 317 (536)
Q Consensus 257 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 317 (536)
...+..+...|...|++++|...|++..+.. +.+...|..+..++...|++++|...|++
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3333333334444444444444444333322 12233333333333334444444433333
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0022 Score=47.88 Aligned_cols=65 Identities=12% Similarity=0.093 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 048749 255 YDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWE 320 (536)
Q Consensus 255 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 320 (536)
.+...+..+...|.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|.+.|++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345556666666666666666666666665544 22344566666666666666666666665544
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0036 Score=46.68 Aligned_cols=87 Identities=11% Similarity=0.029 Sum_probs=65.7
Q ss_pred CCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCcHHHHHH
Q 048749 428 KMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKG-MVPEPRTGIL 506 (536)
Q Consensus 428 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ 506 (536)
+-+...+..+...|...|++++|+..|++..+.. +.+...|..+..+|...|++++|.+.|++.++.. -.++.....-
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~ 82 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE 82 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHH
Confidence 3467888999999999999999999999998864 2256789999999999999999999999987641 1234444444
Q ss_pred HHHHHHhhh
Q 048749 507 VNDMNIKLK 515 (536)
Q Consensus 507 l~~~~~~~~ 515 (536)
+...+...+
T Consensus 83 l~~~l~~~~ 91 (100)
T 3ma5_A 83 LQDAKLKAE 91 (100)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHcc
Confidence 444444433
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0023 Score=51.75 Aligned_cols=93 Identities=16% Similarity=0.101 Sum_probs=67.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCH----------HHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC
Q 048749 135 DWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRF----------VELIQVFDEMP--DLVNEKTYGILLNRYAAAH 202 (536)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----------~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g 202 (536)
.++.|++.++.+.+.. +.+...|+.+..++.+.+++ ++|+..|++.. .+.+..+|..+..+|...|
T Consensus 17 ~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 6788888888888764 56788888888888887765 47777777766 6667777888888877664
Q ss_pred -----------CHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048749 203 -----------MVEEAIGVFDRRKEFGELDDLSAFQNLLL 231 (536)
Q Consensus 203 -----------~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 231 (536)
++++|++.|++.++. .|+...|...+.
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 677777777777764 355555544443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0013 Score=53.17 Aligned_cols=103 Identities=13% Similarity=0.029 Sum_probs=52.3
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048749 200 AAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRF 279 (536)
Q Consensus 200 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 279 (536)
+.+.+++|++.+++..+.. +.+...|..+..++...++++.+.... +.+++|+..
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al------------------------~~~~eAi~~ 68 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAK------------------------QMIQEAITK 68 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHH------------------------HHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhH------------------------hHHHHHHHH
Confidence 3445566666666655544 445555555555555554433221111 014466666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcC-----------CHhHHHHHHHHHHHcCCCCCHhhH
Q 048749 280 WKDIIKSKCEPDSVTYATFVNALTKKG-----------KLGTALRLFQAMWEKGRKPDVVTC 330 (536)
Q Consensus 280 ~~~m~~~g~~~~~~~~~~li~~~~~~g-----------~~~~a~~~~~~m~~~g~~p~~~~~ 330 (536)
|++.++.. +-+..+|..+..+|...| ++++|++.|++..+ +.|+...|
T Consensus 69 le~AL~ld-P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y 127 (158)
T 1zu2_A 69 FEEALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHY 127 (158)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHH
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHH
Confidence 66665544 234455566666665543 56666666666655 24444333
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.92 E-value=0.09 Score=40.46 Aligned_cols=148 Identities=11% Similarity=0.021 Sum_probs=103.9
Q ss_pred HHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 048749 191 YGILLNR--YAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWC 268 (536)
Q Consensus 191 ~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 268 (536)
...|+.+ +.-.|.+++..++..+... ..+..-||-++.-....-+-+-..+.++.+.+-+.. .
T Consensus 8 ~kkLmeAK~~ildG~v~qGveii~k~~~---ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi------------s 72 (172)
T 1wy6_A 8 IRKLMDAKKFLLDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL------------D 72 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG------------G
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHcC---CCCccccceeeeecchhhchhHHHHHHHHHhhhcCc------------H
Confidence 3444443 4556888888888888776 345666777776666777777777777776554432 2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHH
Q 048749 269 VLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALE 348 (536)
Q Consensus 269 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 348 (536)
.+|++......+-.+- .+..-+...++.+...|+-|+-.+++..+... .+|++...-.+..+|.+.|+..+|.+
T Consensus 73 ~C~NlKrVi~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~e 146 (172)
T 1wy6_A 73 KCQNLKSVVECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATT 146 (172)
T ss_dssp GCSCTHHHHHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhhcHHHHHHHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHH
Confidence 5666666666654432 24445666778888888888888888886543 56778888888889999999999999
Q ss_pred HHHHHHHCCCC
Q 048749 349 VLREMKNRGCL 359 (536)
Q Consensus 349 ~~~~m~~~g~~ 359 (536)
++.+.-+.|++
T Consensus 147 Ll~~AC~kG~k 157 (172)
T 1wy6_A 147 LLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTTCH
T ss_pred HHHHHHHhhhH
Confidence 99888888764
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.084 Score=56.00 Aligned_cols=154 Identities=12% Similarity=0.071 Sum_probs=100.2
Q ss_pred HHHccCCHHHHHH-HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048749 165 VLGRARRFVELIQ-VFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAE 243 (536)
Q Consensus 165 ~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~ 243 (536)
.....+++++|.+ ++..+ ++......+++.+.+.|.+++|+++.+.-. .-.......|+++.|.
T Consensus 608 ~~~~~~~~~~a~~~~l~~i---~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~ 672 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNV---EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLAR 672 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGC---CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHH
T ss_pred HHHHhCCHHHHHHHHHhcC---CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHH
Confidence 3345788888877 55443 213344777888888888888887663211 1133456788899888
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC
Q 048749 244 TFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGR 323 (536)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 323 (536)
++.+.+. +...|..+...+.+.|+++.|.+.|..+.+ |..+...+...|+.+...++-+.....|.
T Consensus 673 ~~~~~~~-----~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~ 738 (814)
T 3mkq_A 673 DLLTDES-----AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK 738 (814)
T ss_dssp HHHTTCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhhC-----cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc
Confidence 8865543 678899999999999999999999887642 34455555557777666655555554432
Q ss_pred CCCHhhHHHHHHHHHhcCChHHHHHHHHHH
Q 048749 324 KPDVVTCNCIIDALCFKKRIPEALEVLREM 353 (536)
Q Consensus 324 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 353 (536)
++....+|.+.|++++|++++.++
T Consensus 739 ------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 739 ------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp ------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred ------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 233444455666666666666554
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.13 Score=47.89 Aligned_cols=65 Identities=14% Similarity=0.024 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 048749 254 GYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWE 320 (536)
Q Consensus 254 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 320 (536)
+.+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|++...
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3344455444444444455555555555555443 4444444444455555555555555555444
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.68 E-value=0.12 Score=39.85 Aligned_cols=140 Identities=19% Similarity=0.171 Sum_probs=100.4
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHH
Q 048749 338 CFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPW 417 (536)
Q Consensus 338 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~ 417 (536)
.-.|..++..++..+.... .+..-||-+|--....-+-+-..++++.+-... | +..|++...+..
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiF-----D-------is~C~NlKrVi~ 82 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYF-----D-------LDKCQNLKSVVE 82 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGS-----C-------GGGCSCTHHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhc-----C-------cHhhhcHHHHHH
Confidence 3467888888888887764 366677777777777777777777777664432 1 223444433333
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 048749 418 VLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGM 497 (536)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 497 (536)
.+ ...+ .+...++..++.....|+-|...++...+.. +-+|++...-.+..+|.+-|+..+|.+++.+.-++|+
T Consensus 83 C~---~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 83 CG---VINN--TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HH---HHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HH---HHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 32 2222 2456778889999999999999999998654 3467889999999999999999999999999999887
Q ss_pred C
Q 048749 498 V 498 (536)
Q Consensus 498 ~ 498 (536)
+
T Consensus 157 k 157 (172)
T 1wy6_A 157 K 157 (172)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.64 E-value=0.059 Score=50.19 Aligned_cols=74 Identities=9% Similarity=-0.084 Sum_probs=60.6
Q ss_pred CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHH
Q 048749 324 KPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFN 403 (536)
Q Consensus 324 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~ 403 (536)
+.+..+|..+...+...|++++|...++++...+ |+...|..+-..+.-.|++++|.+.|.+....+ |...||.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~----P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR----PGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----CSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----CCcChHH
Confidence 5577788887777777899999999999998875 788788778888889999999999999998865 6655544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.32 E-value=0.28 Score=51.98 Aligned_cols=98 Identities=10% Similarity=0.049 Sum_probs=60.1
Q ss_pred HhcCCHHHHHH-HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHH
Q 048749 268 CVLGNVYEAKR-FWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEA 346 (536)
Q Consensus 268 ~~~g~~~~A~~-~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 346 (536)
...+++++|.+ ++..+ ++......++..+.+.|..++|+++.+.-. .-.......|++++|
T Consensus 610 ~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A 671 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLA 671 (814)
T ss_dssp HHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHH
Confidence 34667777765 44111 112223566666777777777776553111 112334567888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048749 347 LEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEME 389 (536)
Q Consensus 347 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 389 (536)
.++.+.+ .+...|..+...+.+.++++.|.+.|.++.
T Consensus 672 ~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 672 RDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 7775443 266778888888888888888888887763
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.042 Score=53.25 Aligned_cols=99 Identities=11% Similarity=0.020 Sum_probs=73.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChh
Q 048749 369 IKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCED 448 (536)
Q Consensus 369 i~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 448 (536)
+..+.+.|++++|.+++++..+....+.... .+....+++.|..+|...|+++
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~---------------------------h~~~~~~~~~L~~~y~~~g~~~ 346 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDI---------------------------NIYQLKVLDCAMDACINLGLLE 346 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTT---------------------------SHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCcc---------------------------chHHHHHHHHHHHHHHhhccHH
Confidence 4456678899999999988876532111110 0113578899999999999999
Q ss_pred HHHHHHHHHHHC-----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048749 449 KVRHTWEEMEKK-----GM-GPD-QRSYTVMIHGLYDKGRLEDALSYFHEMRL 494 (536)
Q Consensus 449 ~A~~~~~~m~~~-----g~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 494 (536)
+|+.++++..+- |- .|+ ..+++.|...|...|++++|+.++++.++
T Consensus 347 eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 347 EALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999999987642 21 233 35688999999999999999999998764
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.015 Score=56.39 Aligned_cols=87 Identities=9% Similarity=-0.018 Sum_probs=66.7
Q ss_pred hcCCHhHHHHHHHHHHHc---CCCCC----HhhHHHHHHHHHhcCChHHHHHHHHHHHH-----CCC-CCC-HHHHHHHH
Q 048749 304 KKGKLGTALRLFQAMWEK---GRKPD----VVTCNCIIDALCFKKRIPEALEVLREMKN-----RGC-LPN-VTTYNSLI 369 (536)
Q Consensus 304 ~~g~~~~a~~~~~~m~~~---g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~-~p~-~~~~~~li 369 (536)
..|++++|+.++++..+. -+.|+ ..+++.|..+|...|++++|+.++++..+ .|. .|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457889999999887663 12222 35788899999999999999999998753 232 233 56788899
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 048749 370 KHLCKIKRMETVYEYLDEMEQ 390 (536)
Q Consensus 370 ~~~~~~~~~~~A~~~~~~m~~ 390 (536)
..|...|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999988754
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.02 Score=55.46 Aligned_cols=81 Identities=4% Similarity=-0.040 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHHHHhC--CCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHhCC-------C--CC-CHHHHHHHHHH
Q 048749 134 FDWEAAYTFFKWVSRE--GDYSPG----SNVFNAILDVLGRARRFVELIQVFDEMP-------D--LV-NEKTYGILLNR 197 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~--~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~--~~-~~~~~~~li~~ 197 (536)
|++++|+.+++.+... .-+.++ ..+++.+..+|...|++++|+.++++.. . .| ...+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4556666666554331 111111 2445555556666666666555555443 1 11 12234555555
Q ss_pred HHhcCCHHHHHHHHHHH
Q 048749 198 YAAAHMVEEAIGVFDRR 214 (536)
Q Consensus 198 ~~~~g~~~~A~~~~~~m 214 (536)
|...|++++|+.+|++.
T Consensus 392 ~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 392 YMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHH
Confidence 55555555555555443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.023 Score=41.78 Aligned_cols=54 Identities=20% Similarity=0.242 Sum_probs=26.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 048749 266 GWCVLGNVYEAKRFWKDIIKSKCEPDSV-TYATFVNALTKKGKLGTALRLFQAMWE 320 (536)
Q Consensus 266 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~ 320 (536)
.+.+.|++++|...|++..+.. +.+.. .|..+..++...|++++|.+.|++..+
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444455555555555554432 22333 444445555555555555555555544
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.031 Score=54.14 Aligned_cols=92 Identities=15% Similarity=0.011 Sum_probs=71.0
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcC---CCCC----HhhHHHHHHHHHhcCChHHHHHHHHHHHH-----CCC-CCC-HHH
Q 048749 299 VNALTKKGKLGTALRLFQAMWEKG---RKPD----VVTCNCIIDALCFKKRIPEALEVLREMKN-----RGC-LPN-VTT 364 (536)
Q Consensus 299 i~~~~~~g~~~~a~~~~~~m~~~g---~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~-~p~-~~~ 364 (536)
+..+.+.|++++|+.++++..+.. +.|+ ..+++.+...|...|++++|+.++++..+ .|. .|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 455667899999999999887641 2222 35788899999999999999999998753 221 222 567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048749 365 YNSLIKHLCKIKRMETVYEYLDEMEQ 390 (536)
Q Consensus 365 ~~~li~~~~~~~~~~~A~~~~~~m~~ 390 (536)
++.|...|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88899999999999999999988754
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.49 Score=38.81 Aligned_cols=43 Identities=16% Similarity=0.154 Sum_probs=19.0
Q ss_pred hcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048749 235 RYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKD 282 (536)
Q Consensus 235 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 282 (536)
..|+++.|.++.+.+. +...|..|.......|+++-|.+.|..
T Consensus 17 ~lg~l~~A~e~a~~l~-----~~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 17 EYGNLDAALDEAKKLN-----DSITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HTTCHHHHHHHHHHHC-----CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHhC-----CHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 3444444444443331 334444444444444444444444443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.2 Score=36.43 Aligned_cols=49 Identities=10% Similarity=-0.005 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048749 343 IPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 343 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 392 (536)
.++|..+|++..+.... ++.....+...+.+.|++++|+..|..+.+..
T Consensus 25 ~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 45555555555443222 34444444555555555555555555555544
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.78 E-value=0.12 Score=41.30 Aligned_cols=88 Identities=18% Similarity=0.104 Sum_probs=65.7
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccC---ChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048749 417 WVLERMERNGCKMSTDTYNVILKLYVNWD---CEDKVRHTWEEMEKKGMGP--DQRSYTVMIHGLYDKGRLEDALSYFHE 491 (536)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~ 491 (536)
+.+....+.+ .++..+.-.+..++++.+ ++++++.++++..+.+ .| +...+-.|.-+|.+.|++++|.++++.
T Consensus 19 ~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~ 96 (152)
T 1pc2_A 19 KKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRG 96 (152)
T ss_dssp HHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 3444444444 368888888899999988 6779999999998864 24 355666677789999999999999999
Q ss_pred HHHCCCCCcHHHHHHHH
Q 048749 492 MRLKGMVPEPRTGILVN 508 (536)
Q Consensus 492 m~~~g~~p~~~t~~~l~ 508 (536)
+++ +.|+..--..+.
T Consensus 97 lL~--ieP~n~QA~~Lk 111 (152)
T 1pc2_A 97 LLQ--TEPQNNQAKELE 111 (152)
T ss_dssp HHH--HCTTCHHHHHHH
T ss_pred HHh--cCCCCHHHHHHH
Confidence 998 578655433333
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.89 Score=40.61 Aligned_cols=93 Identities=15% Similarity=0.080 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc-----CCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc-CCh
Q 048749 273 VYEAKRFWKDIIKSKCEPD---SVTYATFVNALTKK-----GKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFK-KRI 343 (536)
Q Consensus 273 ~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~ 343 (536)
...|...+++.++. .|+ -..|..+...|.+. |+.++|.+.|++..+..-.-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 34666666666655 344 45677777777774 88888888888888843222356666677777774 888
Q ss_pred HHHHHHHHHHHHCCCC--CCHHHHHH
Q 048749 344 PEALEVLREMKNRGCL--PNVTTYNS 367 (536)
Q Consensus 344 ~~A~~~~~~m~~~g~~--p~~~~~~~ 367 (536)
++|.+.+++....... |+....+.
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 8888888888877655 55444443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.087 Score=38.36 Aligned_cols=66 Identities=14% Similarity=0.089 Sum_probs=46.9
Q ss_pred CCCHHHHHHHHHHHHccCC---HHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048749 153 SPGSNVFNAILDVLGRARR---FVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFG 218 (536)
Q Consensus 153 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 218 (536)
+.|+..+..+..++...++ .++|..+|++.. ++.++.++..+...+.+.|++++|+..|+++.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4566677777777654333 577777777766 66777777777777777788888888887777654
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.096 Score=38.24 Aligned_cols=55 Identities=16% Similarity=0.067 Sum_probs=28.4
Q ss_pred HHHhcCCHHHHHHHHHHhcCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048749 232 WLCRYKHVEVAETFFESEKNEFGYDIK-TMNIILNGWCVLGNVYEAKRFWKDIIKS 286 (536)
Q Consensus 232 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 286 (536)
.+.+.|++++|...++......+.+.. .+..+..+|...|++++|...|++..+.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344455555555555553222233444 5555555555566666666666555544
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.58 Score=38.34 Aligned_cols=98 Identities=9% Similarity=0.129 Sum_probs=47.3
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048749 198 YAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAK 277 (536)
Q Consensus 198 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 277 (536)
..+.|+++.|.++.+.+ .+...|..|.....+.|+++.|++.|..... +..+.-.|.-.|+.+.-.
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHH
Confidence 34456666665555443 3455566666666666666666666555432 233333444455554444
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 048749 278 RFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLF 315 (536)
Q Consensus 278 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 315 (536)
++-+.....| -++.....+...|+++++.++|
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL 112 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIF 112 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHH
Confidence 4333333322 1233333344455555555554
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.87 E-value=0.33 Score=36.04 Aligned_cols=73 Identities=12% Similarity=0.068 Sum_probs=58.8
Q ss_pred CCHHHHHHHHHHHHccCChhHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHH
Q 048749 429 MSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKG------MGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPR 502 (536)
Q Consensus 429 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 502 (536)
.+..-+-.|...+.+.|+++.|...++...+.- -.+....+..|..++.+.|++++|+.++++..+ +.|+..
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~~ 80 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEHQ 80 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCH
Confidence 345566688899999999999999999877531 123567889999999999999999999999987 567654
Q ss_pred H
Q 048749 503 T 503 (536)
Q Consensus 503 t 503 (536)
.
T Consensus 81 ~ 81 (104)
T 2v5f_A 81 R 81 (104)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.53 E-value=0.22 Score=39.73 Aligned_cols=79 Identities=19% Similarity=0.124 Sum_probs=37.1
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHH
Q 048749 311 ALRLFQAMWEKGRKPDVVTCNCIIDALCFKK---RIPEALEVLREMKNRGCLP--NVTTYNSLIKHLCKIKRMETVYEYL 385 (536)
Q Consensus 311 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~~~~~~A~~~~ 385 (536)
+.+-|.+..+.|. ++..+...+..++++.+ +.++++.+|++..+.. .| ....+..+--+|.+.|++++|.+.+
T Consensus 17 ~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 17 FEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 3344444433332 34444444444555554 3445555555554432 12 1233333444555556666666666
Q ss_pred HHHHhc
Q 048749 386 DEMEQK 391 (536)
Q Consensus 386 ~~m~~~ 391 (536)
+.+.+.
T Consensus 95 ~~lL~i 100 (152)
T 1pc2_A 95 RGLLQT 100 (152)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 655553
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.25 E-value=0.54 Score=34.78 Aligned_cols=28 Identities=11% Similarity=0.139 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048749 328 VTCNCIIDALCFKKRIPEALEVLREMKN 355 (536)
Q Consensus 328 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 355 (536)
.++..+..+|.+.|++++|...++++.+
T Consensus 47 ~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 47 SVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3444444445555555555555554443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.92 E-value=1.8 Score=34.20 Aligned_cols=100 Identities=10% Similarity=0.033 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHHhcCCH------hHHHHHHHHHHHcCCCCCHhh----HHHHHH---HHHhcCChHHHHHHHHHHHHCC
Q 048749 291 DSVTYATFVNALTKKGKL------GTALRLFQAMWEKGRKPDVVT----CNCIID---ALCFKKRIPEALEVLREMKNRG 357 (536)
Q Consensus 291 ~~~~~~~li~~~~~~g~~------~~a~~~~~~m~~~g~~p~~~~----~~~li~---~~~~~g~~~~A~~~~~~m~~~g 357 (536)
|..+|-..+...-+.|+. ++..++|++.... ++|+... |-.+-- .+...++.++|.++|+.+.+.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 444555555555555555 5666666666654 4444211 111100 1123478888888888886543
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048749 358 CLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 358 ~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 392 (536)
-.- ...|-...+--.+.|++++|.+++......+
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 333 5566655566667888888888888887766
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.00 E-value=1 Score=35.50 Aligned_cols=55 Identities=15% Similarity=0.146 Sum_probs=42.0
Q ss_pred CCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 048749 306 GKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPN 361 (536)
Q Consensus 306 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 361 (536)
++.++|.++|+.+++.+-.. ..+|......-.+.|+++.|.+++......+.+|.
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 78888888888887753333 66666666667788999999999998888776643
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.95 E-value=7 Score=37.76 Aligned_cols=95 Identities=18% Similarity=0.195 Sum_probs=58.0
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHc--CCCCC---HhhHHHHHHHHHhcCChHHHHHHHHHHH----HCCCCCC--HHH
Q 048749 296 ATFVNALTKKGKLGTALRLFQAMWEK--GRKPD---VVTCNCIIDALCFKKRIPEALEVLREMK----NRGCLPN--VTT 364 (536)
Q Consensus 296 ~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~p~--~~~ 364 (536)
..|...+...|++.+|.+++..+... |.... ...+..-+..|...+++.+|..+++++. .....|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 44556666777777777777776543 22111 2345566677777788888877777653 2222222 234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048749 365 YNSLIKHLCKIKRMETVYEYLDEMEQ 390 (536)
Q Consensus 365 ~~~li~~~~~~~~~~~A~~~~~~m~~ 390 (536)
|...+..+...+++.+|...|.++..
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 56666667777888887777776644
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=92.70 E-value=0.73 Score=43.83 Aligned_cols=80 Identities=16% Similarity=0.180 Sum_probs=66.8
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCcHHHHHHH
Q 048749 433 TYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRL-----KGMVPEPRTGILV 507 (536)
Q Consensus 433 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~l 507 (536)
+...++..+...|+.++|...++.+.... +-+...|..+|.++.+.|+..+|++.|+++.+ .|+.|.+.+..+.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 45567788889999999999998887652 44778999999999999999999999988765 3999999997777
Q ss_pred HHHHHh
Q 048749 508 NDMNIK 513 (536)
Q Consensus 508 ~~~~~~ 513 (536)
..++..
T Consensus 252 ~~il~~ 257 (388)
T 2ff4_A 252 ERILRQ 257 (388)
T ss_dssp HHHHTT
T ss_pred HHHHcC
Confidence 776544
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=92.47 E-value=6.3 Score=36.04 Aligned_cols=166 Identities=10% Similarity=0.045 Sum_probs=91.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH----HHHHHHcCCCCCHHHHHHHHHHH
Q 048749 158 VFNAILDVLGRARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGV----FDRRKEFGELDDLSAFQNLLLWL 233 (536)
Q Consensus 158 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~~~~~~~~~ll~~~ 233 (536)
.|.++..-|.+.+++++|++++-.- ...+.+.|+...|-++ ++-..+.++++|......++..+
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4556666788889999988876543 2345556665555544 35556778888888777777777
Q ss_pred HhcCCHHHH-HHHHHH-------hcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048749 234 CRYKHVEVA-ETFFES-------EKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKK 305 (536)
Q Consensus 234 ~~~~~~~~a-~~~~~~-------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 305 (536)
.....-+-. ..+.+. ....-.-|......+...|.+.+++.+|...|- .|..+....+..++.-+...
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~ 180 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQ 180 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHT
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHh
Confidence 665532111 111111 111122466666777777777777777776662 23233335555555444443
Q ss_pred CCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 048749 306 GKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMK 354 (536)
Q Consensus 306 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 354 (536)
+...++ |.+.-.++ --|.-.++...|..+|+...
T Consensus 181 ~~~~e~--------------dlfiaRaV-L~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 181 DESHTA--------------PLYCARAV-LPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp SCGGGH--------------HHHHHHHH-HHHHHTTCHHHHHHHHHHHH
T ss_pred cCCccH--------------HHHHHHHH-HHHHHhCCHHHHHHHHHHHH
Confidence 331111 22222222 23555667777766665554
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=92.43 E-value=1 Score=40.26 Aligned_cols=96 Identities=11% Similarity=0.109 Sum_probs=72.0
Q ss_pred HhHHHHHHHHHHHcCCCCC---HhhHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCH
Q 048749 308 LGTALRLFQAMWEKGRKPD---VVTCNCIIDALCFK-----KRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKI-KRM 378 (536)
Q Consensus 308 ~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-~~~ 378 (536)
...|...+++..+ +.|+ ...|..+...|.+. |+.++|.+.|++..+.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 4567777777777 3555 56788899999994 99999999999998875433467777778888884 999
Q ss_pred HHHHHHHHHHHhcCCCCCCcHHHHHHH
Q 048749 379 ETVYEYLDEMEQKNGSCLPNEITFNYL 405 (536)
Q Consensus 379 ~~A~~~~~~m~~~~~~~~p~~~~~~~l 405 (536)
+++.+.+++.....+...|+....+.+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 999999999998773222665444433
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=92.27 E-value=2 Score=32.83 Aligned_cols=85 Identities=12% Similarity=0.028 Sum_probs=50.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHhcCCCCC--CHHHHHHHHHHHHhcCCHHH
Q 048749 201 AHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEV---AETFFESEKNEFGY--DIKTMNIILNGWCVLGNVYE 275 (536)
Q Consensus 201 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~ 275 (536)
......+.+-|.+....| .++..+--.+.-++++...... +..+++.+...-.| .......|.-++.+.|++++
T Consensus 14 ~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 334445555565555545 3666666566667777766555 66666665433222 33344555566677777777
Q ss_pred HHHHHHHHHHC
Q 048749 276 AKRFWKDIIKS 286 (536)
Q Consensus 276 A~~~~~~m~~~ 286 (536)
|.+.++.+.+.
T Consensus 93 A~~~~~~lL~~ 103 (126)
T 1nzn_A 93 ALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 77777777664
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=92.13 E-value=0.47 Score=34.32 Aligned_cols=63 Identities=11% Similarity=0.034 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 048749 203 MVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILN 265 (536)
Q Consensus 203 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 265 (536)
+.-+..+-++.+....+.|++....+.+.+|.+.+++..|.++|+.++.+......+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 455666777777777888888888888888888888888888888876554444445555544
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=91.03 E-value=1.1 Score=42.57 Aligned_cols=69 Identities=9% Similarity=0.037 Sum_probs=49.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH-----cCCCCCHhh
Q 048749 260 MNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWE-----KGRKPDVVT 329 (536)
Q Consensus 260 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~ 329 (536)
...++..+...|++++|...+..+.... +-+...|..+|.++.+.|+..+|++.|+...+ .|+.|+..+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 4455666777788888887777776554 55677788888888888888888888777654 277776554
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=90.52 E-value=2.3 Score=32.57 Aligned_cols=82 Identities=16% Similarity=0.077 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHH
Q 048749 309 GTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPE---ALEVLREMKNRGCLP--NVTTYNSLIKHLCKIKRMETVYE 383 (536)
Q Consensus 309 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~~~~~~A~~ 383 (536)
..+.+-|......|. ++..+--.+..++.+..+... ++.+++.+.+.+ .| .......|.-++.+.|++++|.+
T Consensus 18 ~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 334444444434333 344444444555555554443 566666555442 11 12223334456666666666666
Q ss_pred HHHHHHhcC
Q 048749 384 YLDEMEQKN 392 (536)
Q Consensus 384 ~~~~m~~~~ 392 (536)
.++.+.+..
T Consensus 96 ~~~~lL~~e 104 (126)
T 1nzn_A 96 YVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 666666643
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.48 E-value=3.6 Score=42.52 Aligned_cols=55 Identities=16% Similarity=0.130 Sum_probs=41.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048749 334 IDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEME 389 (536)
Q Consensus 334 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 389 (536)
.+.+...|+++-|+++-++..... +-+..+|..|..+|...|+++.|+-.++.+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 344556788888888888877652 2257888888888888888888888887764
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.71 E-value=15 Score=35.41 Aligned_cols=187 Identities=11% Similarity=0.104 Sum_probs=87.5
Q ss_pred CCHHHHHHHHHHHHh----CCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHH----hcCC
Q 048749 134 FDWEAAYTFFKWVSR----EGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYA----AAHM 203 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~----~~g~ 203 (536)
++++.|++.+-.+.+ ..+......+...++..|.+.|+++...+.+..+. ..........+++.+. ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 356666655544443 22345567778888888888888887755554433 1122223333333222 2222
Q ss_pred HHHH--HHHHHHHH--HcC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHhcC---CCCC---CHHHHHHHHHHHHh
Q 048749 204 VEEA--IGVFDRRK--EFG-ELD---DLSAFQNLLLWLCRYKHVEVAETFFESEKN---EFGY---DIKTMNIILNGWCV 269 (536)
Q Consensus 204 ~~~A--~~~~~~m~--~~g-~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~---~~~~~~~li~~~~~ 269 (536)
.+.. +.+.+... ..| +-. .......|...+-..|++.+|..++..+.. +... -...+...+..|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 1111 11111110 001 001 111223455556666666666666665421 1111 12345555566666
Q ss_pred cCCHHHHHHHHHHHHH----CCCCCCH--HHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 048749 270 LGNVYEAKRFWKDIIK----SKCEPDS--VTYATFVNALTKKGKLGTALRLFQAMWE 320 (536)
Q Consensus 270 ~g~~~~A~~~~~~m~~----~g~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~ 320 (536)
.+++..|..++..+.. ....|+. .-+..++..+...+++.+|-+.|.+...
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 6666666666665431 1112221 2334445555556666666655555543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.40 E-value=5.4 Score=41.19 Aligned_cols=55 Identities=13% Similarity=0.010 Sum_probs=46.8
Q ss_pred HHHHHHccCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048749 437 ILKLYVNWDCEDKVRHTWEEMEKKGMGP-DQRSYTVMIHGLYDKGRLEDALSYFHEMR 493 (536)
Q Consensus 437 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 493 (536)
=.+.+...|+++.|+++-++.... .| +-.+|..|..+|...|+++.|+-.++.+-
T Consensus 343 Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 343 QTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 345567789999999999998876 34 57899999999999999999999998873
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=89.07 E-value=1.1 Score=34.32 Aligned_cols=62 Identities=11% Similarity=0.050 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 048749 204 VEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILN 265 (536)
Q Consensus 204 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 265 (536)
.-+..+-++.+...++.|++......+.+|.+.+++..|.++|+.++.+..+...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 34455666677777788888888888888888888888888888876555555445655544
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=88.27 E-value=23 Score=35.71 Aligned_cols=316 Identities=10% Similarity=0.019 Sum_probs=161.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHh
Q 048749 159 FNAILDVLGRARRFVELIQVFDEMPDLVN--EKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDL-SAFQNLLLWLCR 235 (536)
Q Consensus 159 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~ll~~~~~ 235 (536)
|....++ .+.|++..+..+...+...|- -..|..+.... ......+...++.+-. | .|-. ..-..-+..+.+
T Consensus 10 ~~~a~~a-~~~~~~~~~~~l~~~l~~~pL~~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~--~-~p~~~~Lr~~~l~~l~~ 84 (618)
T 1qsa_A 10 YAQIKQA-WDNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDL-MNQPAVTVTNFVRANP--T-LPPARTLQSRFVNELAR 84 (618)
T ss_dssp HHHHHHH-HHTTCHHHHHHHSGGGTTSTTHHHHHHHHHHHTG-GGCCHHHHHHHHHHCT--T-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHCCCHHHHHHHHHhhcCCCcHHHHHHHHHHhCc-ccCCHHHHHHHHHHCC--C-ChhHHHHHHHHHHHHHh
Confidence 4444443 456888888888887762221 12333333222 2224555555554322 1 2222 233445566777
Q ss_pred cCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhH--HHH
Q 048749 236 YKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGT--ALR 313 (536)
Q Consensus 236 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~--a~~ 313 (536)
.+++.....++.. .+.+...-.....+....|+..+|....+.+-..| .........++..+.+.|.+.. ...
T Consensus 85 ~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~~~~~ 159 (618)
T 1qsa_A 85 REDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLAYLE 159 (618)
T ss_dssp TTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHHHHH
T ss_pred CCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHHHHHH
Confidence 7787776664432 24566666667777778888877877777766555 3334467778888887776543 333
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC---------CCCCCHHH---HHHHHHHHHhcCCHHHH
Q 048749 314 LFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNR---------GCLPNVTT---YNSLIKHLCKIKRMETV 381 (536)
Q Consensus 314 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------g~~p~~~~---~~~li~~~~~~~~~~~A 381 (536)
=++.+...| +...-..++... . .......+.+..+.+. ...++... +..-+.-+.+ .+.+.|
T Consensus 160 R~~~al~~~---~~~~a~~l~~~l-~-~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rlar-~d~~~A 233 (618)
T 1qsa_A 160 RIRLAMKAG---NTGLVTVLAGQM-P-ADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVAR-QDAENA 233 (618)
T ss_dssp HHHHHHHTT---CHHHHHHHHHTC-C-GGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHH-HCHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHhC-C-HHHHHHHHHHHHHHhChHhHHHHHhccCCChhhHHHHHHHHHHHHh-cCHHHH
Confidence 334444443 222222222211 0 1111111112222221 01222221 1122222333 477888
Q ss_pred HHHHHHHHhcCCCCCCcHH--HHHHHHHhcCCCC---hHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHH
Q 048749 382 YEYLDEMEQKNGSCLPNEI--TFNYLLKSLKKPE---EVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEE 456 (536)
Q Consensus 382 ~~~~~~m~~~~~~~~p~~~--~~~~ll~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 456 (536)
...+........ ..+... ....+.......+ ++...+....... .+.....-.+....+.|+++.|...|+.
T Consensus 234 ~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~ 310 (618)
T 1qsa_A 234 RLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLAR 310 (618)
T ss_dssp HHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 888888865542 222221 1222222333222 4444555444332 3444444555556677999999999888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048749 457 MEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRL 494 (536)
Q Consensus 457 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 494 (536)
|...... ...-.--+..++...|+.++|..+|+.+..
T Consensus 311 l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 311 LPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp SCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 8653211 222222344567778999999999988874
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=88.01 E-value=4.1e-05 Score=72.61 Aligned_cols=203 Identities=11% Similarity=0.067 Sum_probs=106.9
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 048749 155 GSNVFNAILDVLGRARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLC 234 (536)
Q Consensus 155 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 234 (536)
.+.+|..|..+..+.+++.+|++.|-+.. |...|..+|.+..+.|.+++-++.+.-.++..-.|... +.|+-+|+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA~---Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~ID--teLi~ayA 127 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKAD---DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVE--TELIFALA 127 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCCS---CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTT--HHHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhCC---ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccH--HHHHHHHH
Confidence 45577777777777777777776665554 33367777777777777777777776555543334333 36777777
Q ss_pred hcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------------------CCCCHHH
Q 048749 235 RYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSK--------------------CEPDSVT 294 (536)
Q Consensus 235 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--------------------~~~~~~~ 294 (536)
+.+++.+-++++. .|+..-...+.+-|...|.++.|.-+|..+..-. -.-++.|
T Consensus 128 k~~rL~elEefl~------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 128 KTNRLAELEEFIN------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp TSCSSSTTTSTTS------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hhCcHHHHHHHHc------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 7776654333321 2444444455555556666665555553322100 0123445
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048749 295 YATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCK 374 (536)
Q Consensus 295 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 374 (536)
|-.+-.+|...+++..|.-.--.++-. +| -...++..|-..|.+++-+.+++.-... -.....+|+-|.-.|++
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsK 275 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSK 275 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHh
Confidence 555555555555554443222222111 11 1122344455556666655555554321 11345555555555544
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=87.99 E-value=7.2 Score=30.04 Aligned_cols=82 Identities=10% Similarity=-0.003 Sum_probs=58.5
Q ss_pred CCCCCHHHHHHHHHHHHccCC---hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHH
Q 048749 426 GCKMSTDTYNVILKLYVNWDC---EDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPR 502 (536)
Q Consensus 426 ~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 502 (536)
+-.|+..+--.+..++.+..+ ..+++.+++++.+.+..-....+-.|.-|+.+.|++++|.++.+.+++ +.|+..
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~ 112 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 112 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCH
Confidence 445666666667777777665 457888998888764212355666777899999999999999999997 577765
Q ss_pred HHHHHHH
Q 048749 503 TGILVND 509 (536)
Q Consensus 503 t~~~l~~ 509 (536)
-...|..
T Consensus 113 QA~~Lk~ 119 (134)
T 3o48_A 113 QVGALKS 119 (134)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5444433
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=87.53 E-value=6 Score=28.69 Aligned_cols=47 Identities=9% Similarity=0.210 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 048749 345 EALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQK 391 (536)
Q Consensus 345 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 391 (536)
+..+-++.+....+.|++....+.+.+|.+.+++.-|.++|+-++.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44444444444455555555555555555555555555555555444
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=87.44 E-value=8.8 Score=42.27 Aligned_cols=190 Identities=12% Similarity=-0.029 Sum_probs=104.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCC-----------------
Q 048749 193 ILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGY----------------- 255 (536)
Q Consensus 193 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----------------- 255 (536)
.++..+...+..+-+.++.... +.+...--.+..++...|++++|.++|.+...++..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 3445555566665555443221 223333234455566667777777777664322211
Q ss_pred ------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC
Q 048749 256 ------DIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDS----VTYATFVNALTKKGKLGTALRLFQAMWEKGRKP 325 (536)
Q Consensus 256 ------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 325 (536)
-..=|.-++..+-+.|.++.+.++-+..++...+-+. ..|..+.+++...|++++|...+-.+.....+
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r- 970 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK- 970 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC-
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH-
Confidence 1123566777788888888888777666553212121 25777888888888888888888777665443
Q ss_pred CHhhHHHHHHHHHhcC------------ChHHHHHHHHHHHH-C-CCCCCHHHHHHHHHHHHhcCCHHHHHH-HHHHHH
Q 048749 326 DVVTCNCIIDALCFKK------------RIPEALEVLREMKN-R-GCLPNVTTYNSLIKHLCKIKRMETVYE-YLDEME 389 (536)
Q Consensus 326 ~~~~~~~li~~~~~~g------------~~~~A~~~~~~m~~-~-g~~p~~~~~~~li~~~~~~~~~~~A~~-~~~~m~ 389 (536)
......+|...|..| ..++..+++..--+ . .+...+.-|..|-.-+...|++.+|-. +|+.+.
T Consensus 971 -~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 971 -KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp -HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 345556666555544 44555666654321 1 111112234444455566777776544 455543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=87.26 E-value=16 Score=40.31 Aligned_cols=142 Identities=13% Similarity=0.058 Sum_probs=70.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----------------
Q 048749 229 LLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPD----------------- 291 (536)
Q Consensus 229 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----------------- 291 (536)
++..+.+.+..+.+.++..... .+......+..+|...|++++|.+.|++... |+..+
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~~----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWLN----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHSC----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhhcc----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccccc
Confidence 4445556666666655544332 2444445566677778888888888865421 11110
Q ss_pred ------HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCH----hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 048749 292 ------SVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDV----VTCNCIIDALCFKKRIPEALEVLREMKNRGCLPN 361 (536)
Q Consensus 292 ------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 361 (536)
..-|..++..+.+.+.++.+.++-....+..-.-+. ..|..+...+...|++++|...+-.+..... -
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r 970 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--K 970 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--C
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--H
Confidence 112344445555555555555554444432111111 1345555555555555555555555544322 2
Q ss_pred HHHHHHHHHHHHhcCC
Q 048749 362 VTTYNSLIKHLCKIKR 377 (536)
Q Consensus 362 ~~~~~~li~~~~~~~~ 377 (536)
......||...|..|.
T Consensus 971 ~~cLr~LV~~lce~~~ 986 (1139)
T 4fhn_B 971 KSCLLDFVNQLTKQGK 986 (1139)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhCCC
Confidence 3344444444444443
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=83.92 E-value=14 Score=28.91 Aligned_cols=80 Identities=10% Similarity=-0.008 Sum_probs=57.2
Q ss_pred CCCCCHHHHHHHHHHHHccCC---hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHH
Q 048749 426 GCKMSTDTYNVILKLYVNWDC---EDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPR 502 (536)
Q Consensus 426 ~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 502 (536)
+-.|+..+--.+..++.+..+ ..+++.+++++.+.+..-.....-.|.-++.+.|++++|.++.+.+++ +.|+..
T Consensus 34 ~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n~ 111 (144)
T 1y8m_A 34 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 111 (144)
T ss_dssp STTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCCH
T ss_pred cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcH
Confidence 445677776677777777665 457888888888753222344555666799999999999999999998 578665
Q ss_pred HHHHH
Q 048749 503 TGILV 507 (536)
Q Consensus 503 t~~~l 507 (536)
-...|
T Consensus 112 QA~~L 116 (144)
T 1y8m_A 112 QVGAL 116 (144)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 43333
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=83.20 E-value=10 Score=29.12 Aligned_cols=47 Identities=9% Similarity=0.210 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 048749 345 EALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQK 391 (536)
Q Consensus 345 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 391 (536)
+..+-++.+....+.|++....+.+.+|.+.+++.-|..+|+-.+.+
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 44445555555556666666666666666666666666666666554
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=80.71 E-value=33 Score=31.06 Aligned_cols=166 Identities=12% Similarity=0.011 Sum_probs=95.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH----HHHHHHcCCCCCHHHHHHHHHHH
Q 048749 158 VFNAILDVLGRARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGV----FDRRKEFGELDDLSAFQNLLLWL 233 (536)
Q Consensus 158 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~~~~~~~~~ll~~~ 233 (536)
.|.++..-|.+.+++++|++++..-. ..+.+.|+...|-++ .+-..+.+++++......++..+
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGA------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 45566677778888888888765432 344556776655554 45556668888888887777776
Q ss_pred HhcCCH--------HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048749 234 CRYKHV--------EVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKK 305 (536)
Q Consensus 234 ~~~~~~--------~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 305 (536)
.....- ..|..+-......-.-+......+...|.+.|++.+|...|- .|..-|...+..++--+...
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i----~~~~~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM----LGTHDSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH----TSCHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH----hCCCccHHHHHHHHHHHHHh
Confidence 554321 112222111111122477788888888888888888887663 12111345555555544444
Q ss_pred ---CCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 048749 306 ---GKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMK 354 (536)
Q Consensus 306 ---g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 354 (536)
|...++ |...-.+ +-.|.-.|+...|..+|+...
T Consensus 179 ~~~~~~~e~--------------dlf~~Ra-VL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 179 VDDIEDSTV--------------AEFFSRL-VFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp TTCCCHHHH--------------HHHHHHH-HHHHHHTTBHHHHHHHHHHHH
T ss_pred cCCCCcchH--------------HHHHHHH-HHHHHHhcCHHHHHHHHHHHH
Confidence 433332 1111122 223556778888888877664
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 536 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.89 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.87 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.56 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.55 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.18 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.17 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.13 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.13 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.1 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.06 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.0 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.98 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.93 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.91 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.56 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.51 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.44 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.42 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.41 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.32 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.31 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.28 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.22 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.19 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.19 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.13 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.09 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.04 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.02 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.97 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.97 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.86 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.75 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.75 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.68 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.66 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.6 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.59 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.58 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.57 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.52 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.51 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.5 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.47 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.4 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.26 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.25 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.16 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.16 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.09 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.77 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.68 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.63 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.39 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.24 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.07 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.5 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.99 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 91.97 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 91.61 | |
| d1bpoa1 | 157 | Clathrin heavy-chain linker domain {Rat (Rattus no | 88.29 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 87.37 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 83.86 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=2.5e-19 Score=172.07 Aligned_cols=370 Identities=13% Similarity=0.048 Sum_probs=283.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048749 133 RFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGV 210 (536)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~ 210 (536)
.|+++.|++.++.+.+.. +.++.++..+..+|.+.|++++|+..|++.. .+.+..+|..+...|.+.|++++|++.
T Consensus 12 ~G~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~ 89 (388)
T d1w3ba_ 12 AGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEH 89 (388)
T ss_dssp HTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccccccc
Confidence 479999999999998864 5578899999999999999999999999987 777889999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 048749 211 FDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEP 290 (536)
Q Consensus 211 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 290 (536)
+....+.. +.+..............+....+............................+....+...+....... +-
T Consensus 90 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 167 (388)
T d1w3ba_ 90 YRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PN 167 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TT
T ss_pred cccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccC-cc
Confidence 99998876 44555555555555555555555555544332234455556666666777888888888887776654 44
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048749 291 DSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIK 370 (536)
Q Consensus 291 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 370 (536)
+...+..+...+...|++++|...++...+.. +-+...+..+...+...|++++|...++.....+. .+...+..+..
T Consensus 168 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~ 245 (388)
T d1w3ba_ 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHGNLAC 245 (388)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhh-hHHHHHHHHHH
Confidence 56777788888888999999999988887753 22566788888888899999999999988876543 36677778888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHh---cCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 048749 371 HLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKS---LKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCE 447 (536)
Q Consensus 371 ~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 447 (536)
.+.+.|++++|.+.|++..+..+ -+...+..+-.. .++..+|.+.++...... +.+...+..+...+.+.|++
T Consensus 246 ~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 321 (388)
T d1w3ba_ 246 VYYEQGLIDLAIDTYRRAIELQP---HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNI 321 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCS---SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCH
Confidence 88889999999999998887652 223344433333 366677777777766643 55778888999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc-HHHHHHHHHHHHhhh
Q 048749 448 DKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPE-PRTGILVNDMNIKLK 515 (536)
Q Consensus 448 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l~~~~~~~~ 515 (536)
++|++.+++..+.. +-+..+|..+...|.+.|++++|...|++.++ +.|+ +..+..+..++.+.|
T Consensus 322 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 322 EEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcC
Confidence 99999999988752 23567788899999999999999999999886 4675 445777777776655
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=1.8e-18 Score=165.94 Aligned_cols=361 Identities=9% Similarity=-0.031 Sum_probs=293.1
Q ss_pred HHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 048749 162 ILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHV 239 (536)
Q Consensus 162 li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 239 (536)
+...+.+.|++++|++.|+++. .+.+..++..+...|.+.|++++|++.|++..+.. +.+..++..+..++.+.|++
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccc
Confidence 4567788999999999999987 66788999999999999999999999999998875 55678999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 048749 240 EVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMW 319 (536)
Q Consensus 240 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 319 (536)
++|...+.......+.+...+..........+....+........... .................+....+...+....
T Consensus 84 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhh
Confidence 999999999655556667777777777777777777777666665554 3344555566677778888888888888877
Q ss_pred HcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcH
Q 048749 320 EKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNE 399 (536)
Q Consensus 320 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~ 399 (536)
... +.+...+..+...+...|++++|...+++..+.... +...|..+...+...|++++|...+.+...... .+.
T Consensus 163 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~ 237 (388)
T d1w3ba_ 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSP---NHA 237 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT---TCH
T ss_pred ccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHHhHHHhh---hHH
Confidence 753 335677888889999999999999999998875432 677889999999999999999999999988752 233
Q ss_pred HHHHHHHH---hcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048749 400 ITFNYLLK---SLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGL 476 (536)
Q Consensus 400 ~~~~~ll~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 476 (536)
..+..+-. ..++.++|...++...+.. +-+..++..+...+...|++++|.+.++...... +.+...+..+...+
T Consensus 238 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 315 (388)
T d1w3ba_ 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHH
Confidence 33433333 3467788888998888764 4467889999999999999999999999988753 45778899999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCc-HHHHHHHHHHHHhhhhhhhhhHHHHHhhhccCCCC
Q 048749 477 YDKGRLEDALSYFHEMRLKGMVPE-PRTGILVNDMNIKLKERGEQGKKVIKLTSLGLKGN 535 (536)
Q Consensus 477 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~ 535 (536)
...|++++|++.|++.++ +.|+ ..++..+..++.+.|+.++|.+.+.+..+ +.|+
T Consensus 316 ~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~ 371 (388)
T d1w3ba_ 316 REQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPT 371 (388)
T ss_dssp HTTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTT
T ss_pred HHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCC
Confidence 999999999999999887 4565 55588899999999999999999998744 3554
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=2.6e-12 Score=119.45 Aligned_cols=242 Identities=11% Similarity=-0.033 Sum_probs=133.5
Q ss_pred HHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 048749 161 AILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKH 238 (536)
Q Consensus 161 ~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 238 (536)
.....+.+.|++++|+..|+++. .+.+..+|..+..++...|++++|+..|.+..+.. +-+...+..+...+...|+
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccc
Confidence 34555666677777777776655 45556666666666666677777776666666543 3345556666666666666
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 048749 239 VEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAM 318 (536)
Q Consensus 239 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 318 (536)
+++|.+.++......+.....+....... ...+.......+..+...+...++.+.|...
T Consensus 103 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 162 (323)
T d1fcha_ 103 QRQACEILRDWLRYTPAYAHLVTPAEEGA--------------------GGAGLGPSKRILGSLLSDSLFLEVKELFLAA 162 (323)
T ss_dssp HHHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhHHHhccchHHHHHhhhhhh--------------------hhcccccchhhHHHHHHhhHHHHHHHHHHHH
Confidence 66666666653211111100000000000 0000001111122233344555666666665
Q ss_pred HHcC-CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC
Q 048749 319 WEKG-RKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLP 397 (536)
Q Consensus 319 ~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p 397 (536)
.+.. -..+..++..+...+...|++++|+..|++....... +...|..+...|.+.|++++|.+.|++..+.. |
T Consensus 163 l~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p 237 (323)
T d1fcha_ 163 VRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ----P 237 (323)
T ss_dssp HHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----T
T ss_pred HHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHh----h
Confidence 5432 2234555666666677777777777777776554322 46666667777777777777777777766543 2
Q ss_pred cHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 048749 398 NEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEK 459 (536)
Q Consensus 398 ~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 459 (536)
-+...+..+..+|.+.|++++|++.|++..+
T Consensus 238 -------------------------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 238 -------------------------------GYIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp -------------------------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -------------------------------ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1455666677777777777777777776654
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=4.1e-12 Score=118.02 Aligned_cols=223 Identities=10% Similarity=0.022 Sum_probs=148.7
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCH
Q 048749 127 NVINRYRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMV 204 (536)
Q Consensus 127 ~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~ 204 (536)
+......|+++.|+..|+.+.+.. +.+..+|..+..+|...|++++|...|++.. .+.+...|..+...|...|++
T Consensus 26 g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 103 (323)
T d1fcha_ 26 GLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQ 103 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccc
Confidence 333344589999999999999874 5678999999999999999999999999877 677889999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHH----------------HHHHHHHHHhcCCHHHHHHHHHHhc--CCCCCCHHHHHHHHHH
Q 048749 205 EEAIGVFDRRKEFGELDDLSA----------------FQNLLLWLCRYKHVEVAETFFESEK--NEFGYDIKTMNIILNG 266 (536)
Q Consensus 205 ~~A~~~~~~m~~~g~~~~~~~----------------~~~ll~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~li~~ 266 (536)
++|.+.+++..... |+... ....+..+...+...+|...+.... .....+..++..+...
T Consensus 104 ~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~ 181 (323)
T d1fcha_ 104 RQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL 181 (323)
T ss_dssp HHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH
T ss_pred cccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 99999999988653 22110 0011122233344455555555421 1112345556666666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHH
Q 048749 267 WCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEA 346 (536)
Q Consensus 267 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 346 (536)
+...|++++|...|++..... +-+..+|..+...|...|++++|.+.|++..+.. +-+...+..+..+|.+.|++++|
T Consensus 182 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A 259 (323)
T d1fcha_ 182 FNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREA 259 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHh-hccHHHHHHHHHHHHHCCCHHHH
Confidence 666666666666666665543 2345566666666666666666666666665532 12344566666666666666666
Q ss_pred HHHHHHHHH
Q 048749 347 LEVLREMKN 355 (536)
Q Consensus 347 ~~~~~~m~~ 355 (536)
++.|++..+
T Consensus 260 ~~~~~~al~ 268 (323)
T d1fcha_ 260 VEHFLEALN 268 (323)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.18 E-value=5.9e-09 Score=95.43 Aligned_cols=188 Identities=9% Similarity=0.073 Sum_probs=120.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHH
Q 048749 272 NVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLR 351 (536)
Q Consensus 272 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 351 (536)
..++|..+|+...+...+.+...|...+..+.+.|+++.|..+|+.+.+........+|...+..+.+.|+.+.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 34556666666655443445555666666666666666666666666654222223355666666666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCC
Q 048749 352 EMKNRGCLPNVTTYNSLIKH-LCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMS 430 (536)
Q Consensus 352 ~m~~~g~~p~~~~~~~li~~-~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~ 430 (536)
.+.+.+.. +...|...... +...|+.+.|..+|+.+.... +.+
T Consensus 159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-----------------------------------p~~ 202 (308)
T d2onda1 159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-----------------------------------GDI 202 (308)
T ss_dssp HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-----------------------------------TTC
T ss_pred HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-----------------------------------hhh
Confidence 66554332 22223222221 223456666666666655433 346
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048749 431 TDTYNVILKLYVNWDCEDKVRHTWEEMEKKG-MGPD--QRSYTVMIHGLYDKGRLEDALSYFHEMRLK 495 (536)
Q Consensus 431 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 495 (536)
...|...++.+.+.|+++.|+.+|++..... ..|+ ...|...+.--...|+.+.+..+++++.+.
T Consensus 203 ~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 203 PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7888889999999999999999999987753 3443 457888888878889999999999988764
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=2.9e-09 Score=97.69 Aligned_cols=112 Identities=8% Similarity=-0.004 Sum_probs=53.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048749 134 FDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRAR-RFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGV 210 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~ 210 (536)
+.++.|++.++.+++.. +.+..+|+....++...| ++++|+..+++.. .+.+..+|+.+...+.+.|++++|++.
T Consensus 57 e~~~~Al~~~~~ai~ln--P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~ 134 (315)
T d2h6fa1 57 ERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEF 134 (315)
T ss_dssp CCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHH
T ss_pred CchHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHH
Confidence 34555555555555542 334445555555554443 2455555555443 444445555555555555555555555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048749 211 FDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFES 248 (536)
Q Consensus 211 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 248 (536)
++++.+.. +.+..+|..+...+.+.|++++|...++.
T Consensus 135 ~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~ 171 (315)
T d2h6fa1 135 IADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQ 171 (315)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHH
T ss_pred Hhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 55554433 33344444444444444444444444444
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.13 E-value=1.7e-08 Score=92.20 Aligned_cols=188 Identities=9% Similarity=0.025 Sum_probs=134.3
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 048749 203 MVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYD-IKTMNIILNGWCVLGNVYEAKRFWK 281 (536)
Q Consensus 203 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~ 281 (536)
..++|..+|++..+...+.+...+...+....+.|+.+.|..+|+.+....+.+ ..+|...+..+.+.|+.+.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 456777777777765545566667777777778888888888888754433333 4467888888888888888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHH-HHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCC-CC
Q 048749 282 DIIKSKCEPDSVTYATFVNA-LTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRG-CL 359 (536)
Q Consensus 282 ~m~~~g~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~ 359 (536)
.+.+.+ +.+...|...... +...|+.+.|..+|+.+.+. .+.+...|...+....+.|+.+.|..+|++..+.. ..
T Consensus 159 ~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 159 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 887665 2333444433332 34467888888888888876 34467778888888888888888888888876653 23
Q ss_pred C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048749 360 P--NVTTYNSLIKHLCKIKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 360 p--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 392 (536)
| ....|...+.--...|+.+.+.++++++.+..
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~ 271 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3 25578877777777889999888888887754
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=1.1e-08 Score=93.70 Aligned_cols=130 Identities=8% Similarity=0.021 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048749 156 SNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAH-MVEEAIGVFDRRKEFGELDDLSAFQNLLLW 232 (536)
Q Consensus 156 ~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 232 (536)
..+++.+..++.+.+.+++|+++++++. .+.+..+|+....++...| ++++|++.+++..+.. +-+..+|..+...
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence 3344455555555555555555555554 4455555555555555443 2555555555554433 3334444444444
Q ss_pred HHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048749 233 LCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKS 286 (536)
Q Consensus 233 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 286 (536)
+.+.|++++|...++.....-+.+..+|..+...+.+.|++++|+..++.+++.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~ 175 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE 175 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred HHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 444455444444444432222334444444444444444444444444444443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.10 E-value=5.6e-08 Score=90.32 Aligned_cols=269 Identities=10% Similarity=-0.018 Sum_probs=165.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhcC---CC---CCCHHHHHHHH
Q 048749 195 LNRYAAAHMVEEAIGVFDRRKEFGELDD----LSAFQNLLLWLCRYKHVEVAETFFESEKN---EF---GYDIKTMNIIL 264 (536)
Q Consensus 195 i~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~---~~~~~~~~~li 264 (536)
...+...|++++|++++++..+..-..+ ..++..+...+...|++++|...++.... .. ......+..+.
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 3445566777777777766655431111 23455555666667777777766665311 11 11223455566
Q ss_pred HHHHhcCCHHHHHHHHHHHHH----CCCCC--C-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC----CCCHhhHHHH
Q 048749 265 NGWCVLGNVYEAKRFWKDIIK----SKCEP--D-SVTYATFVNALTKKGKLGTALRLFQAMWEKGR----KPDVVTCNCI 333 (536)
Q Consensus 265 ~~~~~~g~~~~A~~~~~~m~~----~g~~~--~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~----~p~~~~~~~l 333 (536)
..+...|++..|...+..... .+... . ...+..+...+...|+++.+...+........ ......+...
T Consensus 99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (366)
T d1hz4a_ 99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 178 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 667777888887777766543 11111 1 23445566777788888888888877766422 2223445555
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Q 048749 334 IDALCFKKRIPEALEVLREMKNR----GCLP--NVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLK 407 (536)
Q Consensus 334 i~~~~~~g~~~~A~~~~~~m~~~----g~~p--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~ 407 (536)
...+...++...+...+.+.... +..+ ....+..+...+...|++++|...+........ ..
T Consensus 179 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~---------- 246 (366)
T d1hz4a_ 179 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEF--AN---------- 246 (366)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCC--TT----------
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc--cc----------
Confidence 66677788888888777765431 1111 123455566677788888888888877654431 00
Q ss_pred hcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCCH
Q 048749 408 SLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEK----KGMGPD-QRSYTVMIHGLYDKGRL 482 (536)
Q Consensus 408 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~~~li~~~~~~g~~ 482 (536)
.......+..+...+...|++++|...+++... .+..|+ ...+..+...|.+.|++
T Consensus 247 -------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 307 (366)
T d1hz4a_ 247 -------------------NHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRK 307 (366)
T ss_dssp -------------------CGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred -------------------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCH
Confidence 012344566677888889999999999887753 243343 34677777888999999
Q ss_pred HHHHHHHHHHHH
Q 048749 483 EDALSYFHEMRL 494 (536)
Q Consensus 483 ~~A~~~~~~m~~ 494 (536)
++|.+.+++.++
T Consensus 308 ~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 308 SDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.06 E-value=4.2e-08 Score=91.16 Aligned_cols=262 Identities=11% Similarity=-0.019 Sum_probs=190.2
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHhCC----CCCC----HHHHHH
Q 048749 127 NVINRYRFDWEAAYTFFKWVSREGDYSPG-----SNVFNAILDVLGRARRFVELIQVFDEMP----DLVN----EKTYGI 193 (536)
Q Consensus 127 ~~l~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~ 193 (536)
..+....|+++.|+++++.+.... +.+ ..+++.+..+|...|++++|+..|++.. ...+ ..++..
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~--~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 96 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEEL--PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 96 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTC--CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC--cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 334445689999999999998753 222 3467788899999999999999999875 1122 245666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc----CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhc-----CCCCCCHHHHH
Q 048749 194 LLNRYAAAHMVEEAIGVFDRRKEF----GELDD---LSAFQNLLLWLCRYKHVEVAETFFESEK-----NEFGYDIKTMN 261 (536)
Q Consensus 194 li~~~~~~g~~~~A~~~~~~m~~~----g~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~ 261 (536)
+...+...|++..+...+...... +.... ...+..+...+...|+++.+...+.... .+.......+.
T Consensus 97 ~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 176 (366)
T d1hz4a_ 97 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 176 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 778889999999999998876532 22221 2355567778889999999999988742 12233456677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC---CHhhHHH
Q 048749 262 IILNGWCVLGNVYEAKRFWKDIIKS----KCEP--DSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKP---DVVTCNC 332 (536)
Q Consensus 262 ~li~~~~~~g~~~~A~~~~~~m~~~----g~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~~~~~ 332 (536)
.+...+...++...+...+.+.... +..+ ....+..+...+...|++++|...++......... ....+..
T Consensus 177 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 256 (366)
T d1hz4a_ 177 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 256 (366)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 7778888899999999988776542 1111 12345666677888999999999998876643222 2345566
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048749 333 IIDALCFKKRIPEALEVLREMKN----RGCLPN-VTTYNSLIKHLCKIKRMETVYEYLDEMEQ 390 (536)
Q Consensus 333 li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 390 (536)
+...+...|++++|...++.... .+..|+ ...+..+...|.+.|++++|.+.+++..+
T Consensus 257 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 257 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 78889999999999999998753 343333 45677788899999999999999998755
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.00 E-value=1.1e-08 Score=91.01 Aligned_cols=150 Identities=10% Similarity=-0.100 Sum_probs=102.3
Q ss_pred CHHHHHHHHHHHHhCCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048749 135 DWEAAYTFFKWVSREGDYSP--GSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGV 210 (536)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~ 210 (536)
..+.++.-++.+.......+ ...+|..+..+|.+.|++++|+..|++.. .+.+..+|+.+..+|.+.|++++|++.
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 34455556666655432221 23467777788888888888888888877 677888888888888888888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048749 211 FDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIK 285 (536)
Q Consensus 211 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 285 (536)
|++..+.. +.+..++..+..++...|+++.|...|+......+.+......+..++.+.+..+.+..+......
T Consensus 94 ~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (259)
T d1xnfa_ 94 FDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 167 (259)
T ss_dssp HHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred hhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 88888765 445667777778888888888888888775333344555544444555555555555555555444
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.98 E-value=3e-09 Score=98.79 Aligned_cols=232 Identities=11% Similarity=0.014 Sum_probs=138.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HhHHHHHHHHHHHcCCCCCHhhHH-HHHHHHHhcCChHHH
Q 048749 270 LGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGK--LGTALRLFQAMWEKGRKPDVVTCN-CIIDALCFKKRIPEA 346 (536)
Q Consensus 270 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~~~~-~li~~~~~~g~~~~A 346 (536)
.|.+++|+.+++...+.. +.+...|..+..++...++ +++|...++.+.+.. +++...+. .....+...|..++|
T Consensus 86 ~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~A 163 (334)
T d1dcea1 86 AALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEE 163 (334)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHH
Confidence 344566666666666554 3455566666555555443 566777776666642 22333333 333455566777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCC
Q 048749 347 LEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNG 426 (536)
Q Consensus 347 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~ 426 (536)
+..++.+.+.... +...|+.+...+.+.|++++|...+....... |+...+..........+++...+.......
T Consensus 164 l~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~ 238 (334)
T d1dcea1 164 LAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVL----LKELELVQNAFFTDPNDQSAWFYHRWLLGR 238 (334)
T ss_dssp HHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHH----HHHHHHHHHHHHHCSSCSHHHHHHHHHHSC
T ss_pred HHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhH----HHHHHHHHHHHHhcchhHHHHHHHHHHHhC
Confidence 7777766655433 56666666677777777666655554433321 222222222223344555555555555433
Q ss_pred CCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHH-HH
Q 048749 427 CKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRT-GI 505 (536)
Q Consensus 427 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~ 505 (536)
+++...+..+...+...|+.++|...+.+..+.. +.+..+|..+...+...|++++|.+++++.++ +.|+... +.
T Consensus 239 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~--ldP~~~~y~~ 314 (334)
T d1dcea1 239 -AEPLFRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAAYLD 314 (334)
T ss_dssp -CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH--HCGGGHHHHH
T ss_pred -cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCcccHHHHH
Confidence 3344455666777777888999999888877652 12456677788889999999999999999987 5676544 34
Q ss_pred HHHHHHH
Q 048749 506 LVNDMNI 512 (536)
Q Consensus 506 ~l~~~~~ 512 (536)
.+...+.
T Consensus 315 ~L~~~~~ 321 (334)
T d1dcea1 315 DLRSKFL 321 (334)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 4443333
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.93 E-value=5.9e-09 Score=96.72 Aligned_cols=248 Identities=8% Similarity=-0.040 Sum_probs=186.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH----------ccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC
Q 048749 135 DWEAAYTFFKWVSREGDYSPGSNVFNAILDVLG----------RARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAH 202 (536)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~----------~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g 202 (536)
..+.|+++++.+.+.. +-+..+|+..-..+. ..|++++|+..++... .+.+...|..+..++...+
T Consensus 44 ~~~~al~~~~~~l~~~--P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~ 121 (334)
T d1dcea1 44 LDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP 121 (334)
T ss_dssp CSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCS
T ss_pred ccHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhc
Confidence 4589999999998764 445666765444433 2345788999999877 7788889998888888776
Q ss_pred C--HHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048749 203 M--VEEAIGVFDRRKEFGELDDLSAFQ-NLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRF 279 (536)
Q Consensus 203 ~--~~~A~~~~~~m~~~g~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 279 (536)
+ +++|+..+.++.+.. +++...+. .....+...+..+.|...++.....-+.+..+|+.+...+.+.|++++|...
T Consensus 122 ~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~ 200 (334)
T d1dcea1 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (334)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred cccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHH
Confidence 4 899999999998875 44555554 4456777889999999999997666677899999999999999999888666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 048749 280 WKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCL 359 (536)
Q Consensus 280 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 359 (536)
++...+. .|+ ...+...+...+..+++...+....... +++...+..+...+...|+.++|...+.+..+....
T Consensus 201 ~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 274 (334)
T d1dcea1 201 GRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPENKW 274 (334)
T ss_dssp CSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCch
Confidence 5544332 111 1223444566777888888888877753 345556677778888889999999999988765322
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048749 360 PNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 360 p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 392 (536)
+...|..+...|...|+.++|.+.|++..+.+
T Consensus 275 -~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld 306 (334)
T d1dcea1 275 -CLLTIILLMRALDPLLYEKETLQYFSTLKAVD 306 (334)
T ss_dssp -HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 46777888889999999999999999998865
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.91 E-value=1.5e-08 Score=89.94 Aligned_cols=198 Identities=12% Similarity=-0.075 Sum_probs=140.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 048749 188 EKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGW 267 (536)
Q Consensus 188 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 267 (536)
..+|..+...|.+.|++++|++.|++.++.. +.+..+|..+..++.+.|++++|...|++.....+.+..++..+..+|
T Consensus 37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 115 (259)
T d1xnfa_ 37 AQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 115 (259)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHH
Confidence 3577788899999999999999999999875 567889999999999999999999999996544456778899999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC----h
Q 048749 268 CVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKR----I 343 (536)
Q Consensus 268 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~----~ 343 (536)
...|++++|...|+...+.. +.+......+..++.+.+..+.+..+......... +...++ ++..+..... .
T Consensus 116 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~ 191 (259)
T d1xnfa_ 116 YYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK--EQWGWN-IVEFYLGNISEQTLM 191 (259)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC--CSTHHH-HHHHHTTSSCHHHHH
T ss_pred HHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccch--hhhhhh-HHHHHHHHHHHHHHH
Confidence 99999999999999998765 34555555555556666666666666665555322 222222 2222222211 2
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048749 344 PEALEVLREMKNRGCLP-NVTTYNSLIKHLCKIKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 344 ~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 392 (536)
+.+...+...... .| ...+|..+...|...|++++|.+.|++.....
T Consensus 192 ~~~~~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 192 ERLKADATDNTSL--AEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp HHHHHHCCSHHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhhc--CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 2222222111111 11 23467778889999999999999999998765
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=4.1e-06 Score=69.83 Aligned_cols=123 Identities=9% Similarity=-0.022 Sum_probs=84.4
Q ss_pred HHHHHccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048749 163 LDVLGRARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVA 242 (536)
Q Consensus 163 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a 242 (536)
...+...|++++|++.|+++. +++..+|..+..+|...|++++|++.|++.++.. +.+...|..+..++.+.|++++|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~-~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ-DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHH
Confidence 455567778888888887764 4566777777778888888888888888877765 55666777777777788888887
Q ss_pred HHHHHHhcCCCC---------------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048749 243 ETFFESEKNEFG---------------Y-DIKTMNIILNGWCVLGNVYEAKRFWKDIIKSK 287 (536)
Q Consensus 243 ~~~~~~~~~~~~---------------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 287 (536)
...|++.....+ . ...++..+..++.+.|++++|.+.++...+..
T Consensus 90 ~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 90 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 777776311000 1 12445566667777777777777777766554
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=6.9e-06 Score=68.44 Aligned_cols=121 Identities=16% Similarity=0.023 Sum_probs=68.9
Q ss_pred HHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 048749 233 LCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTAL 312 (536)
Q Consensus 233 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 312 (536)
+...|+++.|.+.|+.+. +++..+|..+..+|...|++++|++.|++.++.+ +-+...|..+..++.+.|++++|+
T Consensus 15 ~~~~~d~~~Al~~~~~i~---~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 15 AADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHTTCHHHHHHHHHTSS---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHCCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHH
Confidence 445566666666655432 3455556666666666666666666666666554 334556666666666666666666
Q ss_pred HHHHHHHHcCC------------C--C-CHhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048749 313 RLFQAMWEKGR------------K--P-DVVTCNCIIDALCFKKRIPEALEVLREMKNRG 357 (536)
Q Consensus 313 ~~~~~m~~~g~------------~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 357 (536)
+.|++...... . . ...++..+..++.+.|++++|.+.|....+..
T Consensus 91 ~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 91 KDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 66666544210 0 0 01234455556667777777777777666543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.44 E-value=2.8e-06 Score=76.26 Aligned_cols=54 Identities=9% Similarity=0.030 Sum_probs=31.8
Q ss_pred HHHHHHccCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048749 162 ILDVLGRARRFVELIQVFDEMP----DLVN----EKTYGILLNRYAAAHMVEEAIGVFDRRK 215 (536)
Q Consensus 162 li~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~ 215 (536)
...+|...|++++|.+.|++.. ...+ ..+|..+..+|.+.|++++|++.+++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~ 104 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAI 104 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhh
Confidence 3456666777777777766654 1111 2356666666666666666666665543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.42 E-value=6.6e-06 Score=73.79 Aligned_cols=206 Identities=10% Similarity=0.014 Sum_probs=131.9
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 048749 171 RFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEF----GELDD-LSAFQNLLLWLCRYKHVEVAETF 245 (536)
Q Consensus 171 ~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~~-~~~~~~ll~~~~~~~~~~~a~~~ 245 (536)
++++|.++|.+ ....|...|++++|.+.|.+..+. +-+++ ..+|..+..+|.+.|++++|...
T Consensus 32 ~~~~Aa~~y~~------------aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~ 99 (290)
T d1qqea_ 32 KFEEAADLCVQ------------AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDS 99 (290)
T ss_dssp HHHHHHHHHHH------------HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHH------------HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 56777666554 456788899999999999887653 21222 35788888889999999999988
Q ss_pred HHHhc-----CC-CCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHhHHHH
Q 048749 246 FESEK-----NE-FGYDIKTMNIILNGWCV-LGNVYEAKRFWKDIIKS----KCEP-DSVTYATFVNALTKKGKLGTALR 313 (536)
Q Consensus 246 ~~~~~-----~~-~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~a~~ 313 (536)
++... .+ ......++..+...|-. .|++++|.+.+++..+. +.++ -..++..+...+...|++++|++
T Consensus 100 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~ 179 (290)
T d1qqea_ 100 LENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASD 179 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHH
Confidence 88731 11 11224456666666644 68899999888876542 2111 13456777888888899999999
Q ss_pred HHHHHHHcCCCCCH------hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC---HHHHHHHHHHHHh--cCCHHHH
Q 048749 314 LFQAMWEKGRKPDV------VTCNCIIDALCFKKRIPEALEVLREMKNRGCL-PN---VTTYNSLIKHLCK--IKRMETV 381 (536)
Q Consensus 314 ~~~~m~~~g~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~---~~~~~~li~~~~~--~~~~~~A 381 (536)
+|+++......... ..+...+..+...|+++.|...+++..+.... ++ ......++.++-. .+.+++|
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~ea 259 (290)
T d1qqea_ 180 IYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEH 259 (290)
T ss_dssp HHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHH
T ss_pred HHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 88887775322111 12334445566788888888888887654321 11 2234556666554 2346777
Q ss_pred HHHHHHH
Q 048749 382 YEYLDEM 388 (536)
Q Consensus 382 ~~~~~~m 388 (536)
+..|+++
T Consensus 260 i~~y~~~ 266 (290)
T d1qqea_ 260 CKEFDNF 266 (290)
T ss_dssp HHHHTTS
T ss_pred HHHHHHH
Confidence 7776554
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=5.6e-06 Score=62.68 Aligned_cols=84 Identities=15% Similarity=0.041 Sum_probs=36.5
Q ss_pred HHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 048749 164 DVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEV 241 (536)
Q Consensus 164 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~ 241 (536)
..+.+.|++++|+..|++.. .+.+...|..+..+|...|++++|++.+.+..+.+ +.+...|..+..++...|++++
T Consensus 11 ~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~~~ 89 (117)
T d1elwa_ 11 NKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFEE 89 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCHHH
Confidence 33444444444444444433 33444444444444444444444444444444433 3333444444444444444444
Q ss_pred HHHHHHH
Q 048749 242 AETFFES 248 (536)
Q Consensus 242 a~~~~~~ 248 (536)
|...|+.
T Consensus 90 A~~~~~~ 96 (117)
T d1elwa_ 90 AKRTYEE 96 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=7.2e-06 Score=66.03 Aligned_cols=84 Identities=14% Similarity=0.112 Sum_probs=37.5
Q ss_pred HHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 048749 164 DVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEV 241 (536)
Q Consensus 164 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~ 241 (536)
..|.+.|++++|+..|++.. .+.+...|..+..+|...|++++|++.|++.++.. +.+..+|..+..++...|++++
T Consensus 18 n~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~~e 96 (159)
T d1a17a_ 18 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 96 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCHHH
Confidence 33444444444444444443 33444444444444444444444444444444433 2333444444444444444444
Q ss_pred HHHHHHH
Q 048749 242 AETFFES 248 (536)
Q Consensus 242 a~~~~~~ 248 (536)
|...+++
T Consensus 97 A~~~~~~ 103 (159)
T d1a17a_ 97 ALRDYET 103 (159)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=1.5e-05 Score=60.21 Aligned_cols=91 Identities=12% Similarity=-0.015 Sum_probs=46.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 048749 195 LNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVY 274 (536)
Q Consensus 195 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 274 (536)
...+...|++++|+..|++.++.. +.+...|..+..++.+.|++++|...++......+.+...|..+..++...|+++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 344555555555555555555543 3444455555555555555555555555532222444555555555555555555
Q ss_pred HHHHHHHHHHHC
Q 048749 275 EAKRFWKDIIKS 286 (536)
Q Consensus 275 ~A~~~~~~m~~~ 286 (536)
+|+..|+...+.
T Consensus 89 ~A~~~~~~a~~~ 100 (117)
T d1elwa_ 89 EAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 555555555443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=1.6e-05 Score=63.97 Aligned_cols=92 Identities=20% Similarity=0.065 Sum_probs=51.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH
Q 048749 194 LLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNV 273 (536)
Q Consensus 194 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 273 (536)
....|.+.|++++|+..|.+.++.. +.+...|..+..++...|++++|...|+......+.+..+|..+..+|...|++
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence 3445556666666666666666554 344555555555555556666665555553322244555555555555555555
Q ss_pred HHHHHHHHHHHHC
Q 048749 274 YEAKRFWKDIIKS 286 (536)
Q Consensus 274 ~~A~~~~~~m~~~ 286 (536)
++|...+++....
T Consensus 95 ~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 95 RAALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 5555555555544
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.22 E-value=1.6e-05 Score=66.62 Aligned_cols=98 Identities=13% Similarity=-0.036 Sum_probs=54.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 048749 186 VNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILN 265 (536)
Q Consensus 186 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 265 (536)
|+...+......+.+.|++++|+..|.+.++.. +.+...|..+..+|.+.|+++.|...|+....-.+-+..+|..+..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~ 80 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHH
Confidence 344444455555556666666666665555543 3445555555555555555555555555543333444555555555
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 048749 266 GWCVLGNVYEAKRFWKDII 284 (536)
Q Consensus 266 ~~~~~g~~~~A~~~~~~m~ 284 (536)
+|.+.|++++|+..|++..
T Consensus 81 ~~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 81 CQLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHH
Confidence 5666666666665555544
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.19 E-value=0.0016 Score=56.64 Aligned_cols=111 Identities=13% Similarity=0.046 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCChH
Q 048749 273 VYEAKRFWKDIIKSKCEPDSVTYATFVNALTK----KGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCF----KKRIP 344 (536)
Q Consensus 273 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~ 344 (536)
...|...+...... .+...+..+...+.. ..+...+..+++...+.| +......+...|.. ..+.+
T Consensus 126 ~~~a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~ 199 (265)
T d1ouva_ 126 FKKAVEYFTKACDL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFK 199 (265)
T ss_dssp HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHH
T ss_pred hHHHHHHhhhhhcc---cccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchh
Confidence 34444444444332 233444444444443 233444555555544433 33333333333333 34566
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcC
Q 048749 345 EALEVLREMKNRGCLPNVTTYNSLIKHLCK----IKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 345 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~ 392 (536)
+|+..|....+.| ++..+..|...|.+ ..+.++|.++|++..+.|
T Consensus 200 ~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 200 EALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred hhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 6666666666554 34455555555543 235666666666666555
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.19 E-value=0.002 Score=57.70 Aligned_cols=279 Identities=9% Similarity=0.048 Sum_probs=149.9
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 048749 154 PGSNVFNAILDVLGRARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWL 233 (536)
Q Consensus 154 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 233 (536)
||..--..+.+.|.+.|.++.|..+|..+. -|..++..+.+.+++..|.+++.+. .+..+|..+..+|
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~------d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l 79 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFAC 79 (336)
T ss_dssp C----------------CTTTHHHHHHHTT------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC------CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHH
Confidence 455556667778888888888888888876 5777778888888888888777543 3566777888888
Q ss_pred HhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 048749 234 CRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALR 313 (536)
Q Consensus 234 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 313 (536)
.+......+..+ ......+......++..|-..|.+++...+++...... ..+...++.++..|++.+. ++..+
T Consensus 80 ~~~~e~~la~i~----~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~~-~kl~e 153 (336)
T d1b89a_ 80 VDGKEFRLAQMC----GLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKP-QKMRE 153 (336)
T ss_dssp HHTTCHHHHHHT----TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCH-HHHHH
T ss_pred HhCcHHHHHHHH----HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhCh-HHHHH
Confidence 877766554222 11222355555678888888888888888888765432 4566777888888877643 33333
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH----------HCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048749 314 LFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMK----------NRGCLPNVTTYNSLIKHLCKIKRMETVYE 383 (536)
Q Consensus 314 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~----------~~g~~p~~~~~~~li~~~~~~~~~~~A~~ 383 (536)
.+...+. ..-...++..|-+.+-++++.-++..+. +. .+++.-....+..+.+..+.+...+
T Consensus 154 ---~l~~~s~---~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~--~~~~~~~~~f~e~~~k~~N~e~~~~ 225 (336)
T d1b89a_ 154 ---HLELFWS---RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH--PTDAWKEGQFKDIITKVANVELYYR 225 (336)
T ss_dssp ---HHHHHST---TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS--TTTTCCHHHHHHHHHHCSSTHHHHH
T ss_pred ---HHHhccc---cCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHc--chhhhhHHHHHHHHHccCChHHHHH
Confidence 3333111 1112233344444444444444443332 11 1222223334455566666655555
Q ss_pred HHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 048749 384 YLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMG 463 (536)
Q Consensus 384 ~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 463 (536)
+.....+.. |+ ..+.+|...+..-+. ..++..+-+.+++......++.....|
T Consensus 226 ~i~~yL~~~----p~--~i~~lL~~v~~~~d~-------------------~r~V~~~~k~~~l~li~p~Le~v~~~n-- 278 (336)
T d1b89a_ 226 AIQFYLEFK----PL--LLNDLLMVLSPRLDH-------------------TRAVNYFSKVKQLPLVKPYLRSVQNHN-- 278 (336)
T ss_dssp HHHHHHHHC----GG--GHHHHHHHHGGGCCH-------------------HHHHHHHHHTTCTTTTHHHHHHHHTTC--
T ss_pred HHHHHHHcC----HH--HHHHHHHHhccCCCH-------------------HHHHHHHHhcCCcHHHHHHHHHHHHcC--
Confidence 555444322 32 122222222222222 234444555666666777776665544
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHH
Q 048749 464 PDQRSYTVMIHGLYDKGRLEDAL 486 (536)
Q Consensus 464 p~~~~~~~li~~~~~~g~~~~A~ 486 (536)
+....++|...|...++++.-.
T Consensus 279 -~~~vn~al~~lyie~~d~~~l~ 300 (336)
T d1b89a_ 279 -NKSVNESLNNLFITEEDYQALR 300 (336)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHH
T ss_pred -hHHHHHHHHHHHhCcchhHHHH
Confidence 4567888888888888865533
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.13 E-value=1.6e-05 Score=66.71 Aligned_cols=98 Identities=5% Similarity=-0.112 Sum_probs=45.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048749 221 DDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVN 300 (536)
Q Consensus 221 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 300 (536)
|+...+......+.+.|++++|...|+......|.+...|+.+..+|.+.|++++|+..|+..++.. +-+..+|..+..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg~ 80 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHHH
Confidence 3344444444455555555555555544322223444445555555555555555555555544332 123444444555
Q ss_pred HHHhcCCHhHHHHHHHHHH
Q 048749 301 ALTKKGKLGTALRLFQAMW 319 (536)
Q Consensus 301 ~~~~~g~~~~a~~~~~~m~ 319 (536)
+|...|++++|+..|+...
T Consensus 81 ~~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 81 CQLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHH
Confidence 5555555555555554443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.09 E-value=0.0025 Score=55.26 Aligned_cols=192 Identities=12% Similarity=0.073 Sum_probs=91.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhcCCCCCCHHHHHH
Q 048749 187 NEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCR----YKHVEVAETFFESEKNEFGYDIKTMNI 262 (536)
Q Consensus 187 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 262 (536)
|+..+..|...+.+.+++++|++.|++..+.| +...+..|...|.. ..+...|...+....... +......
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~~~ 75 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHL 75 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccchhhc
Confidence 34456666666667777777777777776655 44445455555544 345666666665532111 3333333
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHcCCCCCHhhHHHHH
Q 048749 263 ILNGWCV----LGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTK----KGKLGTALRLFQAMWEKGRKPDVVTCNCII 334 (536)
Q Consensus 263 li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 334 (536)
+...+.. ..+.+.|...++...+.|.. .....+...+.. ......+...+...... .+...+..+.
T Consensus 76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~ 149 (265)
T d1ouva_ 76 LGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILG 149 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhh
Confidence 3333322 45566666666666655421 122222222221 23344444544444443 2334444454
Q ss_pred HHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcC
Q 048749 335 DALCF----KKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCK----IKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 335 ~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~ 392 (536)
..|.. ..+...+...++...+.| +......+-..|.. ..++++|..+|.+..+.|
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g 212 (265)
T d1ouva_ 150 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE 212 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT
T ss_pred hhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc
Confidence 44443 233444555555544432 33333333333332 234555555555544433
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.04 E-value=1.8e-05 Score=59.23 Aligned_cols=25 Identities=12% Similarity=-0.068 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHH
Q 048749 257 IKTMNIILNGWCVLGNVYEAKRFWK 281 (536)
Q Consensus 257 ~~~~~~li~~~~~~g~~~~A~~~~~ 281 (536)
..+|..+...|...|++++|++.++
T Consensus 84 ~~a~~~la~~y~~~g~~~~A~~~l~ 108 (112)
T d1hxia_ 84 IAVHAALAVSHTNEHNANAALASLR 108 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHCCCHHHHHHHHH
Confidence 3333333333334444444433333
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.02 E-value=0.0043 Score=55.40 Aligned_cols=268 Identities=10% Similarity=0.051 Sum_probs=168.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048749 134 FDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVFDR 213 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 213 (536)
|.++.|..++..+. -|..++..+.+.+++..|.+++.+. .+..+|..+...+.+.....-| .
T Consensus 28 ~lye~A~~lY~~~~----------d~~rl~~~~v~l~~~~~avd~~~k~---~~~~~~k~~~~~l~~~~e~~la-----~ 89 (336)
T d1b89a_ 28 KMYDAAKLLYNNVS----------NFGRLASTLVHLGEYQAAVDGARKA---NSTRTWKEVCFACVDGKEFRLA-----Q 89 (336)
T ss_dssp -CTTTHHHHHHHTT----------CHHHHHHHHHTTTCHHHHHHHHHHH---TCHHHHHHHHHHHHHTTCHHHH-----H
T ss_pred CCHHHHHHHHHhCC----------CHHHHHHHHHhhccHHHHHHHHHHc---CCHHHHHHHHHHHHhCcHHHHH-----H
Confidence 57888888887653 3667888889999999999988877 4666999999999888776554 2
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 048749 214 RKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSV 293 (536)
Q Consensus 214 m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 293 (536)
+.......++.....++..|-..|.++....+++.....-..+...++-++..|++.+. ++-.+ .+......-|
T Consensus 90 i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~~-~kl~e---~l~~~s~~y~-- 163 (336)
T d1b89a_ 90 MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP-QKMRE---HLELFWSRVN-- 163 (336)
T ss_dssp HTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCH-HHHHH---HHHHHSTTSC--
T ss_pred HHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhCh-HHHHH---HHHhccccCC--
Confidence 33344456777777899999999999999999998543346688889999999988653 33333 3333111222
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHc--------CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 048749 294 TYATFVNALTKKGKLGTALRLFQAMWEK--------GRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTY 365 (536)
Q Consensus 294 ~~~~li~~~~~~g~~~~a~~~~~~m~~~--------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 365 (536)
...++..|-+.+-+.++.-++..+... .-.++..-....+..+.+..+.+...++.....+. .| ...
T Consensus 164 -~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~--~p--~~i 238 (336)
T d1b89a_ 164 -IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KP--LLL 238 (336)
T ss_dssp -HHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CG--GGH
T ss_pred -HHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHcchhhhhHHHHHHHHHccCChHHHHHHHHHHHHc--CH--HHH
Confidence 223344455555554444444432211 01233333445566666666666666665555442 22 233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 048749 366 NSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWD 445 (536)
Q Consensus 366 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 445 (536)
+.++......-+..+..+.+++ .++.......++.....+ +..+.+++...|...+
T Consensus 239 ~~lL~~v~~~~d~~r~V~~~~k---------------------~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~ 294 (336)
T d1b89a_ 239 NDLLMVLSPRLDHTRAVNYFSK---------------------VKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEE 294 (336)
T ss_dssp HHHHHHHGGGCCHHHHHHHHHH---------------------TTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTT
T ss_pred HHHHHHhccCCCHHHHHHHHHh---------------------cCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcc
Confidence 4555555555555555554433 233444555666655555 4578899999999999
Q ss_pred ChhHHHHHH
Q 048749 446 CEDKVRHTW 454 (536)
Q Consensus 446 ~~~~A~~~~ 454 (536)
+++.-.+..
T Consensus 295 d~~~l~~~i 303 (336)
T d1b89a_ 295 DYQALRTSI 303 (336)
T ss_dssp CHHHHHHHH
T ss_pred hhHHHHHHH
Confidence 876654444
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.97 E-value=3.6e-05 Score=58.31 Aligned_cols=103 Identities=16% Similarity=0.129 Sum_probs=79.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 048749 366 NSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWD 445 (536)
Q Consensus 366 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 445 (536)
..++..+...+++++|.+.|++....+ +.+..++..+..++.+.+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-----------------------------------p~~~~~~~n~a~~L~~s~ 47 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-----------------------------------SVSKSTQFEYAWCLVRTR 47 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-----------------------------------CCCHHHHHHHHHHHTTSS
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-----------------------------------CCCHHHHHHHHHHHHHhc
Confidence 456777888889999999999888866 446778888888887655
Q ss_pred C---hhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHH
Q 048749 446 C---EDKVRHTWEEMEKKGMGPD-QRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRTGI 505 (536)
Q Consensus 446 ~---~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 505 (536)
+ +++|+.+++++...+..|+ ..+|..+..+|.+.|++++|+++|++.++ +.|+..-..
T Consensus 48 ~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~--~~P~~~~A~ 109 (122)
T d1nzna_ 48 YNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ--TEPQNNQAK 109 (122)
T ss_dssp SHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHH
T ss_pred chHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--hCcCCHHHH
Confidence 4 4569999999887643333 23677888899999999999999999998 567765533
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.97 E-value=3.1e-05 Score=57.80 Aligned_cols=88 Identities=14% Similarity=0.085 Sum_probs=48.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCh
Q 048749 264 LNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRI 343 (536)
Q Consensus 264 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 343 (536)
...+.+.|++++|...|++.++.. +-+..+|..+..++.+.|++++|+..|+...+.. +.+...+..+...|...|++
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCH
Confidence 334445566666666665555543 2245555555555666666666666665555542 22345555555556666666
Q ss_pred HHHHHHHHHH
Q 048749 344 PEALEVLREM 353 (536)
Q Consensus 344 ~~A~~~~~~m 353 (536)
++|++.|++.
T Consensus 101 ~~A~~~l~~~ 110 (112)
T d1hxia_ 101 NAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666655543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.86 E-value=0.00011 Score=55.55 Aligned_cols=93 Identities=13% Similarity=0.063 Sum_probs=57.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHhcCCCC-CC-HHHHHHHHHHH
Q 048749 193 ILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHV---EVAETFFESEKNEFG-YD-IKTMNIILNGW 267 (536)
Q Consensus 193 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~-~~-~~~~~~li~~~ 267 (536)
.+++.+...+++++|.+.|++....+ +.+..++..+..++.+.++. ++|..+++.+...-+ |+ ..+|..+..+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 45566666777777777777777655 55666666666666654443 346666666432211 22 23566666667
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 048749 268 CVLGNVYEAKRFWKDIIKS 286 (536)
Q Consensus 268 ~~~g~~~~A~~~~~~m~~~ 286 (536)
.+.|++++|++.|+++.+.
T Consensus 83 ~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHh
Confidence 7777777777777776664
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.75 E-value=0.00054 Score=55.21 Aligned_cols=62 Identities=10% Similarity=-0.072 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 048749 259 TMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEK 321 (536)
Q Consensus 259 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 321 (536)
+|+.+..+|.+.|++++|+..++..++.. +-++.+|..+..+|...|++++|+..|+...+.
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 46667777777888888888877777665 446777777777788888888888888877774
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.75 E-value=0.00083 Score=54.42 Aligned_cols=129 Identities=16% Similarity=0.123 Sum_probs=92.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChh
Q 048749 369 IKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCED 448 (536)
Q Consensus 369 i~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 448 (536)
.......|++++|.+.|.+......+.. +..+.....+...-..+... ....+..+...+.+.|+++
T Consensus 18 g~~~~~~g~~e~A~~~~~~AL~l~rG~~---------l~~~~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~~g~~~ 84 (179)
T d2ff4a2 18 GVHAAAAGRFEQASRHLSAALREWRGPV---------LDDLRDFQFVEPFATALVED----KVLAHTAKAEAEIACGRAS 84 (179)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCSST---------TGGGTTSTTHHHHHHHHHHH----HHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccc---------cccCcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCCch
Confidence 3466778999999999998877532111 11122222222222222221 2456778899999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCcHHHHHHHHHHH
Q 048749 449 KVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRL-----KGMVPEPRTGILVNDMN 511 (536)
Q Consensus 449 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~l~~~~ 511 (536)
+|+..++.+.+.. +-+...|..++.+|.+.|+.++|++.|+++.. .|+.|.+.|..+...+.
T Consensus 85 ~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l~~~il 151 (179)
T d2ff4a2 85 AVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERIL 151 (179)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHH
Confidence 9999999998863 34788999999999999999999999999854 59999998866666554
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.68 E-value=0.00036 Score=53.16 Aligned_cols=94 Identities=11% Similarity=0.084 Sum_probs=55.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC-CC-----HhhHHHHH
Q 048749 261 NIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRK-PD-----VVTCNCII 334 (536)
Q Consensus 261 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~-----~~~~~~li 334 (536)
..+...|.+.|++++|+..|++.++.+ +.+..+|..+..+|.+.|++++|+..++++++.... +. ..+|..+.
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 344555666667777777776666654 345666666666677777777777766666553100 01 12455555
Q ss_pred HHHHhcCChHHHHHHHHHHHH
Q 048749 335 DALCFKKRIPEALEVLREMKN 355 (536)
Q Consensus 335 ~~~~~~g~~~~A~~~~~~m~~ 355 (536)
..+...+++++|++.|+....
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 566666677777777666544
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.66 E-value=0.00058 Score=55.00 Aligned_cols=63 Identities=8% Similarity=-0.072 Sum_probs=49.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048749 329 TCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 329 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 392 (536)
+|+.+..+|.+.|++++|+..++...+.... ++..|..+..+|...|++++|...|++..+.+
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 126 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY 126 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 5666777788888888888888888776432 67778888888888888888888888887755
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.60 E-value=0.00063 Score=54.72 Aligned_cols=82 Identities=7% Similarity=-0.078 Sum_probs=53.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 048749 256 DIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIID 335 (536)
Q Consensus 256 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 335 (536)
....|..+..+|.+.|++++|+..++..++.. +.+..+|..+..++...|++++|++.|+...+.. +.+..+...+..
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~ 153 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK 153 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44556666777777777777777777777655 4466677777777777777777777777777742 224444544444
Q ss_pred HHHh
Q 048749 336 ALCF 339 (536)
Q Consensus 336 ~~~~ 339 (536)
+..+
T Consensus 154 ~~~~ 157 (169)
T d1ihga1 154 VKQK 157 (169)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.59 E-value=0.0012 Score=51.87 Aligned_cols=64 Identities=16% Similarity=0.031 Sum_probs=52.3
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048749 328 VTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 328 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 392 (536)
.+|+.+..+|.+.|++++|++.++...+... .++.+|..+..+|...|++++|...|.+..+..
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p-~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~ 131 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLN 131 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccc-hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3667788888888999999999888877643 367888888888999999999999998888755
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.58 E-value=0.0017 Score=51.09 Aligned_cols=63 Identities=10% Similarity=-0.113 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 048749 258 KTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEK 321 (536)
Q Consensus 258 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 321 (536)
.+|+.+..+|.+.|++++|++.++..++.. +.+..+|..+..++...|++++|+..|+...+.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 356667777777777777777777776665 456677777777777777777777777777764
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.57 E-value=0.0009 Score=54.20 Aligned_cols=71 Identities=8% Similarity=0.029 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH-----cCCCCCHhh
Q 048749 258 KTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWE-----KGRKPDVVT 329 (536)
Q Consensus 258 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~ 329 (536)
..+..+...+.+.|++++|+..++.+.+.. +-+...|..++.+|.+.|+.++|++.|+++.+ .|+.|...+
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 445566666666777777777776666654 44666667777777777777777766666533 366665543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.52 E-value=0.00066 Score=51.65 Aligned_cols=92 Identities=16% Similarity=0.131 Sum_probs=44.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC---CCCCC----HHHHHHHHH
Q 048749 193 ILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKN---EFGYD----IKTMNIILN 265 (536)
Q Consensus 193 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~----~~~~~~li~ 265 (536)
.+...+.+.|++++|++.|++.++.+ +.+...+..+..+|.+.|+++.|...++.... ..... ..+|..+..
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~ 87 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555543 33455555555555555555555555554210 00000 123444445
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 048749 266 GWCVLGNVYEAKRFWKDIIK 285 (536)
Q Consensus 266 ~~~~~g~~~~A~~~~~~m~~ 285 (536)
.+...+++++|+..|+....
T Consensus 88 ~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 88 SYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHh
Confidence 55555555555555555443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.51 E-value=2.8e-05 Score=75.37 Aligned_cols=115 Identities=7% Similarity=-0.159 Sum_probs=53.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHH
Q 048749 255 YDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCII 334 (536)
Q Consensus 255 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 334 (536)
++...+..+...+.+.|+.+.|...++...... ...++..+...+...|++++|...|++..+. .+-+...|+.+.
T Consensus 118 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l-~P~~~~~~~~Lg 193 (497)
T d1ya0a1 118 PCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQL-VPSNGQPYNQLA 193 (497)
T ss_dssp -------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTBSHHHHHHH
T ss_pred hhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-CCCchHHHHHHH
Confidence 344555666666666666666666655544321 1234555666666677777777777776664 222445677777
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048749 335 DALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCK 374 (536)
Q Consensus 335 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 374 (536)
..+...|+..+|+..|.+..... .|-..++..|...+.+
T Consensus 194 ~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 194 ILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHH
Confidence 77777777777777776666543 2355556666555544
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.50 E-value=0.00085 Score=53.85 Aligned_cols=62 Identities=10% Similarity=-0.023 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 048749 259 TMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEK 321 (536)
Q Consensus 259 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 321 (536)
+|+.+..+|.+.|++++|+..++...+.. +.+..+|..+..++...|++++|...|+.+.+.
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45556666667777777777777766654 456666777777777777777777777777664
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.47 E-value=0.00044 Score=55.70 Aligned_cols=76 Identities=13% Similarity=-0.007 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048749 225 AFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNA 301 (536)
Q Consensus 225 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 301 (536)
.+..+..++.+.|++++|...++.....-+.+..+|..+..+|.+.|++++|+..|+...+.. +.+......+..+
T Consensus 79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~~ 154 (169)
T d1ihga1 79 CVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKV 154 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 444555555666666666666665433334555566666666666666666666666665543 2244444444433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.40 E-value=0.0012 Score=53.01 Aligned_cols=76 Identities=11% Similarity=0.063 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048749 225 AFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNA 301 (536)
Q Consensus 225 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 301 (536)
.|..+..+|.+.|++++|...++......+.+..+|..+..+|...|++++|...|+...+.. +.+......+-..
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~ 141 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMC 141 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 344455556666666666666666433335566666666666666666666666666666543 2344444443333
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.26 E-value=0.00039 Score=60.37 Aligned_cols=119 Identities=7% Similarity=-0.097 Sum_probs=63.0
Q ss_pred HccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048749 167 GRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAET 244 (536)
Q Consensus 167 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~ 244 (536)
.+.|++++|+..+++.. .+.+...+..+...++..|++++|++.|+...+.. +-+...+..+...+...+..+++..
T Consensus 7 L~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~a~~ 85 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKDFAQ 85 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHHHHH
Confidence 45567777777777665 56666777777777777777777777777766643 2223333333333332222222211
Q ss_pred HHHH-hcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048749 245 FFES-EKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKS 286 (536)
Q Consensus 245 ~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 286 (536)
-... ....-+++...+......+...|+.++|.+.++++.+.
T Consensus 86 ~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 86 GAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp SCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 1111 01111223333444445566667777777777666553
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.25 E-value=0.00022 Score=62.07 Aligned_cols=122 Identities=9% Similarity=-0.072 Sum_probs=64.6
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048749 199 AAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKR 278 (536)
Q Consensus 199 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 278 (536)
.+.|++++|++.+++.++.. +.|...+..+...++..|++++|...++......+.+...+..+...+...+..+++..
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~ 85 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQ 85 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHH
Confidence 45677777777777777655 55667777777777777777777777777433323344444444443332222222211
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 048749 279 FWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEK 321 (536)
Q Consensus 279 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 321 (536)
-.......+-+++...+......+...|+.++|.++++++.+.
T Consensus 86 ~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 86 GAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp SCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 1100000111122233333445556667777777777666554
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.16 E-value=0.00074 Score=65.00 Aligned_cols=134 Identities=12% Similarity=0.007 Sum_probs=72.9
Q ss_pred ccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048749 168 RARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETF 245 (536)
Q Consensus 168 ~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~ 245 (536)
..+.++.|+..+.... .+.+...+..+...+.+.|+.++|...+....... ...++..+...+...|++++|...
T Consensus 98 a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~ 174 (497)
T d1ya0a1 98 ASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESY 174 (497)
T ss_dssp HHHHHHHHHHHHTC-------------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHH
Confidence 3455666666665544 34555667777777777788888777776655421 124566677778888888888888
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048749 246 FESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKK 305 (536)
Q Consensus 246 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 305 (536)
|++.....|.+...|+.|...|...|+..+|...|.+..... +|-..++..|...+.+.
T Consensus 175 y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 175 YRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHh
Confidence 887544446677788888888888888888888888877665 56677777777766544
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.16 E-value=0.00099 Score=51.89 Aligned_cols=83 Identities=10% Similarity=-0.036 Sum_probs=42.8
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048749 198 YAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAK 277 (536)
Q Consensus 198 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 277 (536)
|-+.+.+++|++.|+...+.. +.+..++..+..++...++...+.+ ..+.+++|+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e------------------------~~~~~~~Ai 61 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISD------------------------AKQMIQEAI 61 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHH------------------------HHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhH------------------------HHHHHHHHH
Confidence 344555666666666666654 4555566666555554333222211 112345566
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048749 278 RFWKDIIKSKCEPDSVTYATFVNALTKKG 306 (536)
Q Consensus 278 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g 306 (536)
..|++.++.. +.+..+|..+..+|...|
T Consensus 62 ~~~~kAl~l~-P~~~~a~~~lG~~y~~~g 89 (145)
T d1zu2a1 62 TKFEEALLID-PKKDEAVWCIGNAYTSFA 89 (145)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-chhhHHHhhHHHHHHHcc
Confidence 6666665544 344555655555555443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.09 E-value=0.0013 Score=51.21 Aligned_cols=71 Identities=13% Similarity=0.045 Sum_probs=52.2
Q ss_pred HHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC----------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 048749 166 LGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAH----------MVEEAIGVFDRRKEFGELDDLSAFQNLLLWL 233 (536)
Q Consensus 166 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g----------~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 233 (536)
|-+.+.+++|+..|+... .|.+..++..+..++...+ .+++|++.|++.++.. +.+..+|..+..+|
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y 85 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 85 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHHH
Confidence 456677999999999987 8889999999998887543 4567777777777654 45566666666666
Q ss_pred HhcC
Q 048749 234 CRYK 237 (536)
Q Consensus 234 ~~~~ 237 (536)
...|
T Consensus 86 ~~~g 89 (145)
T d1zu2a1 86 TSFA 89 (145)
T ss_dssp HHHH
T ss_pred HHcc
Confidence 5443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.77 E-value=0.015 Score=45.46 Aligned_cols=53 Identities=19% Similarity=0.122 Sum_probs=26.3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC-CCC----------HHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 048749 267 WCVLGNVYEAKRFWKDIIKSKC-EPD----------SVTYATFVNALTKKGKLGTALRLFQAMW 319 (536)
Q Consensus 267 ~~~~g~~~~A~~~~~~m~~~g~-~~~----------~~~~~~li~~~~~~g~~~~a~~~~~~m~ 319 (536)
+...|++++|+..|++.++... .|+ ...|+.+..+|.+.|++++|...+++..
T Consensus 19 ~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al 82 (156)
T d2hr2a1 19 QLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL 82 (156)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhh
Confidence 3445666666666666554210 011 2344555555555555555555555444
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.68 E-value=0.018 Score=44.99 Aligned_cols=99 Identities=13% Similarity=0.070 Sum_probs=74.1
Q ss_pred HHHHHH--HHHHHhcCCHhHHHHHHHHHHHcC-CCCC----------HhhHHHHHHHHHhcCChHHHHHHHHHHHHC---
Q 048749 293 VTYATF--VNALTKKGKLGTALRLFQAMWEKG-RKPD----------VVTCNCIIDALCFKKRIPEALEVLREMKNR--- 356 (536)
Q Consensus 293 ~~~~~l--i~~~~~~g~~~~a~~~~~~m~~~g-~~p~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 356 (536)
.+|..+ ...+.+.|++++|+..|++.++.. -.|+ ...|+.+..+|.+.|++++|...+++..+.
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~ 87 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 87 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence 355555 455667899999999999998741 1121 357888999999999999999999987642
Q ss_pred --CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 048749 357 --GCLPN-----VTTYNSLIKHLCKIKRMETVYEYLDEMEQK 391 (536)
Q Consensus 357 --g~~p~-----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 391 (536)
...++ ...++.+..+|...|++++|++.|++..+.
T Consensus 88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 88 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12222 235667788999999999999999987653
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.63 E-value=0.066 Score=38.70 Aligned_cols=141 Identities=18% Similarity=0.177 Sum_probs=99.5
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHH
Q 048749 337 LCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVP 416 (536)
Q Consensus 337 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~ 416 (536)
+.-.|..++..+++.+.... .+..-||-+|--....-+-+-.+++++.+-.... +..|+......
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FD------------ls~C~Nlk~vv 76 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFD------------LDKCQNLKSVV 76 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSC------------GGGCSCTHHHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcC------------chhhhcHHHHH
Confidence 34567888888888887764 3667777777777777777777777776644321 12233333332
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048749 417 WVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKG 496 (536)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 496 (536)
..+ ...+ .+...++..++....+|+-|...++++.+.+.+ +|++...-.+..+|.+-|...++-+++.+.-++|
T Consensus 77 ~C~---~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 77 ECG---VINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHH---HHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHH---HHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 222 2221 245677888899999999999999999877743 7888888889999999999999999999999888
Q ss_pred CC
Q 048749 497 MV 498 (536)
Q Consensus 497 ~~ 498 (536)
++
T Consensus 151 ~K 152 (161)
T d1wy6a1 151 EK 152 (161)
T ss_dssp CH
T ss_pred HH
Confidence 64
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.39 E-value=0.011 Score=41.78 Aligned_cols=63 Identities=6% Similarity=-0.054 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHhCC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048749 156 SNVFNAILDVLGRARRFVELIQVFDEMP---------DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFG 218 (536)
Q Consensus 156 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 218 (536)
...+-.+...+.+.|++++|+..|++.. ......+++.+..++.+.|++++|++.|++.++..
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~ 76 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence 3444456666666666666666665543 01113456666666666666666666666666643
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.24 E-value=0.12 Score=37.33 Aligned_cols=141 Identities=11% Similarity=0.029 Sum_probs=99.3
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048749 198 YAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAK 277 (536)
Q Consensus 198 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 277 (536)
+.-.|.+++..+++.+... ..+..-||-++.-....-+-+...+.++.+.+-+..+ .++++....
T Consensus 12 ~ildG~ve~Gveii~k~~~---ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls------------~C~Nlk~vv 76 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD------------KCQNLKSVV 76 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG------------GCSCTHHHH
T ss_pred HHHhhhHHhHHHHHHHHcc---cCCccccceeeeecccccchHHHHHHHHHHhhhcCch------------hhhcHHHHH
Confidence 4567888888888888776 3456667777776677777777777777765544322 455555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048749 278 RFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRG 357 (536)
Q Consensus 278 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 357 (536)
..+-.+- .+..-+...++.+.+.|+-+.-.++++.+.+. -++++...-.+..+|.+.|...++-+++.+.-+.|
T Consensus 77 ~C~~~~n-----~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 77 ECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 5553331 23344566678888888888888888887774 46677788888889999999999999988888877
Q ss_pred CC
Q 048749 358 CL 359 (536)
Q Consensus 358 ~~ 359 (536)
++
T Consensus 151 ~K 152 (161)
T d1wy6a1 151 EK 152 (161)
T ss_dssp CH
T ss_pred HH
Confidence 64
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.07 E-value=0.031 Score=39.17 Aligned_cols=27 Identities=11% Similarity=0.156 Sum_probs=13.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048749 329 TCNCIIDALCFKKRIPEALEVLREMKN 355 (536)
Q Consensus 329 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 355 (536)
++..+..+|.+.|++++|+..++++.+
T Consensus 48 ~l~~Lg~~~~~~g~~~~A~~~y~~aL~ 74 (95)
T d1tjca_ 48 VLDYLSYAVYQQGDLDKALLLTKKLLE 74 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence 344444445555555555555554444
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.50 E-value=0.25 Score=36.81 Aligned_cols=110 Identities=9% Similarity=0.018 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCChHHHH
Q 048749 272 NVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCF----KKRIPEAL 347 (536)
Q Consensus 272 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~ 347 (536)
|+++|.++|++..+.|. +. ....|. .....+.++|++++++..+.| ++..+..|-..|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g~-~~--a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNE-MF--GCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTTC-TT--HHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCC-hh--hhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 56677777777776662 22 222222 223456777777777777765 34444445555543 34677888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcC
Q 048749 348 EVLREMKNRGCLPNVTTYNSLIKHLCK----IKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 348 ~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~ 392 (536)
++|++..+.| ++.....|-..|.. ..+.++|.++|++..+.|
T Consensus 80 ~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 80 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 8888887765 44555555555554 357788888888877766
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.99 E-value=0.42 Score=35.44 Aligned_cols=50 Identities=14% Similarity=0.074 Sum_probs=27.5
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCC
Q 048749 445 DCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYD----KGRLEDALSYFHEMRLKGM 497 (536)
Q Consensus 445 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~ 497 (536)
.+.++|.+.|++..+.| ++.....|-..|.. ..+.++|.++|++..+.|.
T Consensus 73 ~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 73 KDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred hhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 34566666666666654 33334444444443 3456667777666666553
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.97 E-value=0.78 Score=33.18 Aligned_cols=80 Identities=10% Similarity=0.018 Sum_probs=56.2
Q ss_pred CCCHHHHHHHHHHHHcc---CChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHH
Q 048749 428 KMSTDTYNVILKLYVNW---DCEDKVRHTWEEMEKKGMGPD-QRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRT 503 (536)
Q Consensus 428 ~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 503 (536)
.++..+-=....++.+. .++++++.+++++.+.+ +.+ ...+-.|.-+|.+.|++++|.++++.+++ +.|+..-
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~n~q 108 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQ 108 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCCcHH
Confidence 34555555556666654 45678999999988753 223 35677788899999999999999999998 5677665
Q ss_pred HHHHHHH
Q 048749 504 GILVNDM 510 (536)
Q Consensus 504 ~~~l~~~ 510 (536)
...+...
T Consensus 109 A~~L~~~ 115 (124)
T d2pqrb1 109 VGALKSM 115 (124)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.61 E-value=0.28 Score=33.46 Aligned_cols=62 Identities=11% Similarity=0.030 Sum_probs=44.5
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 048749 203 MVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIIL 264 (536)
Q Consensus 203 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 264 (536)
+.-++.+-++.+....+.|++....+.+.+|.+.+++..|.++|+.++....++...|..++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yil 82 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 82 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 45566667777777778888888888888888888888888888887654444444554444
|
| >d1bpoa1 a.118.1.4 (A:331-487) Clathrin heavy-chain linker domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy-chain linker domain domain: Clathrin heavy-chain linker domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.29 E-value=3.8 Score=30.47 Aligned_cols=110 Identities=13% Similarity=0.076 Sum_probs=83.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048749 134 FDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVF 211 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~ 211 (536)
++++.|+++ +.+.+ ++--...|..-.+.+...|++.+|-.+--..+ ...+..|.+.+-.+-...|+..-.+..|
T Consensus 13 ~n~~la~~l---A~r~~-LpGAd~l~~~~F~~lf~~g~y~eAA~~aA~sP~giLRt~~Ti~rFk~~~~~pGq~spLL~YF 88 (157)
T d1bpoa1 13 QNPDLALRM---AVRNN-LAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYF 88 (157)
T ss_dssp CCHHHHHHH---HHHTT-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHH
T ss_pred CCHHHHHHH---HHhcC-CCChHHHHHHHHHHHHHcCCHHHHHHHHHhCCcccccCHHHHHHHHcCCCCCCCCCHHHHHH
Confidence 477777544 44433 66677778888899999999999999988887 4677888877776656677777788888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048749 212 DRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFES 248 (536)
Q Consensus 212 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 248 (536)
..+.+.| ..|..--.-++......|+.+..+.++.+
T Consensus 89 ~~Ll~~~-~LN~~ESlEl~r~vL~q~r~~lve~Wl~e 124 (157)
T d1bpoa1 89 GILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKE 124 (157)
T ss_dssp HHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhcC-CCchHHhHHHHHHHHhcCcHHHHHHHHHc
Confidence 8888887 56666555677777888888888877766
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.37 E-value=3 Score=28.27 Aligned_cols=47 Identities=9% Similarity=0.210 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 048749 345 EALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQK 391 (536)
Q Consensus 345 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 391 (536)
++.+-++.+....+.|++....+-+++|.+.+++.-|..+|+..+.+
T Consensus 24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K 70 (105)
T d1v54e_ 24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 70 (105)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44444444444455555555555555555555555555555555444
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.86 E-value=5.8 Score=28.38 Aligned_cols=51 Identities=10% Similarity=0.095 Sum_probs=29.1
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048749 342 RIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 342 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 392 (536)
+.++++.+|+++.+.+..-....+..|.-+|.+.|++++|.+.++.+.+..
T Consensus 53 d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ie 103 (124)
T d2pqrb1 53 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 103 (124)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 345666666666543211112344455556667777777777777776644
|